Query 000941
Match_columns 1215
No_of_seqs 335 out of 1733
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 11:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1824 TATA-binding protein-i 100.0 1E-208 3E-213 1734.6 108.5 1205 1-1215 1-1219(1233)
2 KOG2171 Karyopherin (importin) 100.0 2.3E-47 5.1E-52 448.7 72.9 907 14-1152 47-1028(1075)
3 KOG1824 TATA-binding protein-i 100.0 1.9E-45 4.1E-50 416.4 76.7 983 6-1091 49-1187(1233)
4 PF08623 TIP120: TATA-binding 100.0 2.1E-47 4.5E-52 366.1 14.8 167 1035-1202 1-169 (169)
5 KOG2023 Nuclear transport rece 100.0 6.4E-37 1.4E-41 336.0 46.4 668 21-771 65-787 (885)
6 KOG1241 Karyopherin (importin) 100.0 1.4E-32 3E-37 307.9 56.3 677 18-762 51-814 (859)
7 KOG2171 Karyopherin (importin) 100.0 5.7E-29 1.2E-33 294.1 76.8 845 43-1052 115-1022(1075)
8 KOG2023 Nuclear transport rece 100.0 2.2E-25 4.7E-30 245.8 46.6 603 5-675 129-821 (885)
9 KOG1241 Karyopherin (importin) 99.9 4.9E-24 1.1E-28 239.7 44.7 596 1-676 169-816 (859)
10 COG5215 KAP95 Karyopherin (imp 99.9 5.3E-22 1.1E-26 215.3 57.9 607 16-687 53-726 (858)
11 KOG0213 Splicing factor 3b, su 99.9 5E-19 1.1E-23 197.4 59.4 743 35-880 353-1144(1172)
12 COG5215 KAP95 Karyopherin (imp 99.9 1.4E-18 3.1E-23 188.9 46.2 610 2-687 174-830 (858)
13 PLN03200 cellulose synthase-in 99.9 1.1E-14 2.3E-19 188.0 75.7 627 5-720 190-864 (2102)
14 PLN03200 cellulose synthase-in 99.8 6.6E-14 1.4E-18 180.8 78.8 779 4-879 13-861 (2102)
15 KOG0213 Splicing factor 3b, su 99.8 1.1E-15 2.3E-20 171.1 53.1 524 142-714 525-1066(1172)
16 COG5181 HSH155 U2 snRNP splice 99.8 1.2E-15 2.6E-20 167.6 47.3 737 41-878 164-947 (975)
17 KOG1242 Protein containing ada 99.8 2.5E-17 5.3E-22 185.3 34.0 465 38-583 88-557 (569)
18 COG5181 HSH155 U2 snRNP splice 99.8 1.3E-14 2.9E-19 159.5 40.7 646 5-715 169-872 (975)
19 KOG1242 Protein containing ada 99.7 2.6E-13 5.6E-18 153.3 38.5 520 56-664 27-557 (569)
20 KOG0915 Uncharacterized conser 99.6 5.2E-12 1.1E-16 153.5 46.3 602 5-670 819-1468(1702)
21 KOG0915 Uncharacterized conser 99.6 5.3E-12 1.1E-16 153.4 45.7 573 42-713 814-1427(1702)
22 PF01602 Adaptin_N: Adaptin N 99.5 3.7E-11 8E-16 147.5 42.3 474 8-588 46-522 (526)
23 KOG0212 Uncharacterized conser 99.5 1.7E-10 3.6E-15 127.4 38.5 395 50-502 4-410 (675)
24 PF01602 Adaptin_N: Adaptin N 99.5 1.2E-09 2.6E-14 134.1 45.7 473 128-711 43-522 (526)
25 KOG1248 Uncharacterized conser 99.4 3.2E-07 7E-12 111.1 61.0 704 6-762 140-901 (1176)
26 KOG1991 Nuclear transport rece 99.4 1.1E-06 2.5E-11 104.4 61.8 610 1-670 1-710 (1010)
27 PTZ00429 beta-adaptin; Provisi 99.4 1.3E-08 2.8E-13 123.9 47.5 466 7-586 71-542 (746)
28 KOG0212 Uncharacterized conser 99.4 2.9E-09 6.4E-14 117.8 35.9 389 178-631 8-408 (675)
29 KOG1248 Uncharacterized conser 99.4 5.8E-07 1.3E-11 109.0 57.5 602 10-675 230-902 (1176)
30 PTZ00429 beta-adaptin; Provisi 99.3 2.1E-07 4.5E-12 113.7 51.7 283 370-712 256-545 (746)
31 KOG0211 Protein phosphatase 2A 99.3 1.3E-08 2.9E-13 122.2 39.1 560 65-713 101-664 (759)
32 KOG1943 Beta-tubulin folding c 99.3 3.7E-07 8.1E-12 109.2 48.6 628 15-713 136-881 (1133)
33 KOG1992 Nuclear export recepto 99.3 1.4E-06 3E-11 101.3 50.9 636 16-740 51-775 (960)
34 KOG1991 Nuclear transport rece 99.2 3.5E-05 7.7E-10 92.2 59.6 548 6-613 38-780 (1010)
35 PRK13800 putative oxidoreducta 99.2 1.4E-09 3.1E-14 139.1 25.8 275 47-452 622-896 (897)
36 PRK13800 putative oxidoreducta 99.1 2.3E-09 5.1E-14 137.2 23.0 275 4-395 621-895 (897)
37 KOG1020 Sister chromatid cohes 99.1 4.5E-05 9.7E-10 94.7 55.5 666 3-740 580-1388(1692)
38 KOG1943 Beta-tubulin folding c 99.1 1.3E-05 2.8E-10 96.5 48.9 506 42-672 337-882 (1133)
39 KOG0211 Protein phosphatase 2A 99.1 3.1E-07 6.6E-12 110.7 35.6 542 43-673 118-666 (759)
40 PRK09687 putative lyase; Provi 99.0 2.2E-08 4.8E-13 109.2 20.0 239 4-305 23-262 (280)
41 PF10508 Proteasom_PSMB: Prote 99.0 2.3E-06 5.1E-11 102.2 38.1 434 5-500 4-464 (503)
42 KOG2274 Predicted importin 9 [ 99.0 0.00031 6.7E-09 83.3 59.1 615 50-764 8-651 (1005)
43 KOG0166 Karyopherin (importin) 98.9 1.5E-07 3.4E-12 106.7 24.7 359 87-542 69-438 (514)
44 PF12460 MMS19_C: RNAPII trans 98.9 2.9E-06 6.4E-11 99.3 36.1 380 7-474 2-413 (415)
45 PRK09687 putative lyase; Provi 98.9 3.1E-08 6.7E-13 108.0 18.2 221 7-279 57-278 (280)
46 KOG0166 Karyopherin (importin) 98.9 2.2E-07 4.8E-12 105.4 24.4 352 6-399 68-436 (514)
47 KOG1060 Vesicle coat complex A 98.9 2E-05 4.2E-10 91.5 38.9 485 51-671 40-533 (968)
48 KOG1993 Nuclear transport rece 98.9 0.00036 7.7E-09 81.5 48.7 278 442-736 503-789 (978)
49 PF10508 Proteasom_PSMB: Prote 98.8 1.4E-05 3.1E-10 95.5 37.2 351 89-498 43-420 (503)
50 KOG2274 Predicted importin 9 [ 98.8 0.0012 2.7E-08 78.5 56.7 236 422-672 445-690 (1005)
51 KOG1020 Sister chromatid cohes 98.8 0.0021 4.5E-08 80.7 65.8 650 420-1156 810-1529(1692)
52 COG5240 SEC21 Vesicle coat com 98.8 0.00065 1.4E-08 76.3 43.4 466 170-711 65-553 (898)
53 KOG1060 Vesicle coat complex A 98.7 9E-05 2E-09 86.2 37.0 360 344-774 123-511 (968)
54 KOG1992 Nuclear export recepto 98.7 0.0019 4.1E-08 76.1 57.4 234 508-748 495-743 (960)
55 KOG1062 Vesicle coat complex A 98.7 0.0002 4.4E-09 83.9 39.4 426 42-594 103-548 (866)
56 KOG2021 Nuclear mRNA export fa 98.7 0.0023 5E-08 74.5 46.9 621 16-675 51-768 (980)
57 PF12348 CLASP_N: CLASP N term 98.6 1.7E-06 3.8E-11 92.9 18.2 182 340-543 18-209 (228)
58 PF12460 MMS19_C: RNAPII trans 98.6 2.2E-05 4.8E-10 92.0 28.4 254 38-303 127-414 (415)
59 PF12348 CLASP_N: CLASP N term 98.6 2.2E-06 4.8E-11 92.2 17.8 190 95-293 18-216 (228)
60 KOG1967 DNA repair/transcripti 98.5 0.0063 1.4E-07 72.9 63.6 193 828-1025 791-1018(1030)
61 KOG4535 HEAT and armadillo rep 98.5 0.00025 5.3E-09 77.9 29.8 498 135-668 55-600 (728)
62 KOG0168 Putative ubiquitin fus 98.5 9.5E-05 2.1E-09 86.6 28.4 425 4-466 167-640 (1051)
63 KOG4224 Armadillo repeat prote 98.5 2.6E-05 5.6E-10 82.5 21.6 387 6-459 87-497 (550)
64 KOG1059 Vesicle coat complex A 98.4 0.00089 1.9E-08 77.5 34.9 289 44-400 107-402 (877)
65 KOG0414 Chromosome condensatio 98.4 0.015 3.2E-07 71.9 69.0 157 849-1051 919-1083(1251)
66 KOG1061 Vesicle coat complex A 98.4 0.00022 4.7E-09 83.9 28.8 202 4-219 86-291 (734)
67 KOG1059 Vesicle coat complex A 98.3 0.014 3.1E-07 68.0 40.2 99 190-300 129-227 (877)
68 PF12755 Vac14_Fab1_bd: Vacuol 98.3 6.6E-06 1.4E-10 73.2 10.9 93 271-398 3-95 (97)
69 KOG1062 Vesicle coat complex A 98.3 0.0087 1.9E-07 70.8 38.5 447 171-707 108-575 (866)
70 KOG4224 Armadillo repeat prote 98.2 0.00031 6.8E-09 74.5 22.0 391 209-674 86-496 (550)
71 KOG1240 Protein kinase contain 98.1 0.00017 3.6E-09 87.8 21.0 255 19-285 438-727 (1431)
72 KOG2062 26S proteasome regulat 98.1 0.037 8.1E-07 64.8 38.4 193 928-1156 485-680 (929)
73 COG5656 SXM1 Importin, protein 98.1 0.046 9.9E-07 64.2 46.1 150 144-302 431-587 (970)
74 KOG4535 HEAT and armadillo rep 98.1 0.036 7.8E-07 61.6 38.0 225 371-653 391-624 (728)
75 PF12755 Vac14_Fab1_bd: Vacuol 98.1 3E-05 6.5E-10 69.0 10.0 77 226-305 2-78 (97)
76 COG5096 Vesicle coat complex, 98.0 0.0094 2E-07 72.0 33.3 187 4-204 92-279 (757)
77 COG5064 SRP1 Karyopherin (impo 98.0 0.00068 1.5E-08 71.4 20.1 215 61-284 53-273 (526)
78 KOG1240 Protein kinase contain 98.0 0.0013 2.9E-08 80.4 24.5 262 440-714 437-726 (1431)
79 KOG2032 Uncharacterized conser 98.0 0.012 2.6E-07 66.0 30.0 154 555-714 254-413 (533)
80 KOG4653 Uncharacterized conser 98.0 0.00056 1.2E-08 80.8 20.7 218 142-397 740-962 (982)
81 KOG2259 Uncharacterized conser 98.0 0.0007 1.5E-08 77.6 20.5 287 167-501 195-514 (823)
82 KOG1820 Microtubule-associated 98.0 0.00078 1.7E-08 82.6 22.6 182 340-544 264-447 (815)
83 KOG0891 DNA-dependent protein 97.9 0.064 1.4E-06 73.2 40.5 536 6-628 136-762 (2341)
84 KOG0168 Putative ubiquitin fus 97.9 0.029 6.2E-07 66.8 32.3 254 171-476 168-435 (1051)
85 PF05004 IFRD: Interferon-rela 97.9 0.0014 3.1E-08 72.7 21.4 186 483-674 57-260 (309)
86 PF08623 TIP120: TATA-binding 97.9 8.6E-06 1.9E-10 79.5 3.3 125 960-1091 8-148 (169)
87 COG5064 SRP1 Karyopherin (impo 97.9 0.0018 3.8E-08 68.4 20.0 262 602-910 114-397 (526)
88 KOG1967 DNA repair/transcripti 97.8 0.0002 4.3E-09 85.1 14.5 158 366-537 863-1021(1030)
89 KOG2956 CLIP-associating prote 97.8 0.0018 3.8E-08 71.9 20.3 210 83-304 285-499 (516)
90 KOG1061 Vesicle coat complex A 97.8 0.089 1.9E-06 62.7 34.6 487 106-713 32-528 (734)
91 KOG2956 CLIP-associating prote 97.7 0.0019 4.2E-08 71.6 19.0 190 4-204 286-482 (516)
92 PF03378 CAS_CSE1: CAS/CSE pro 97.7 0.044 9.5E-07 63.8 31.0 217 80-305 22-252 (435)
93 KOG4653 Uncharacterized conser 97.7 0.005 1.1E-07 73.1 22.9 219 45-278 726-959 (982)
94 PF03378 CAS_CSE1: CAS/CSE pro 97.7 0.0081 1.8E-07 69.8 24.8 251 286-593 17-275 (435)
95 PF13513 HEAT_EZ: HEAT-like re 97.7 6.5E-05 1.4E-09 59.7 5.2 55 343-397 1-55 (55)
96 PF12717 Cnd1: non-SMC mitotic 97.7 0.00018 3.9E-09 73.4 9.7 107 941-1050 2-112 (178)
97 KOG1820 Microtubule-associated 97.7 0.001 2.2E-08 81.6 17.1 149 343-514 309-459 (815)
98 KOG0392 SNF2 family DNA-depend 97.6 0.4 8.6E-06 60.1 39.5 169 6-178 79-257 (1549)
99 KOG1822 Uncharacterized conser 97.6 0.41 8.9E-06 62.6 39.1 449 28-521 855-1408(2067)
100 KOG0413 Uncharacterized conser 97.6 0.35 7.5E-06 58.6 40.7 136 862-1043 944-1086(1529)
101 KOG1058 Vesicle coat complex C 97.6 0.19 4.1E-06 59.3 32.8 166 380-586 30-197 (948)
102 COG5240 SEC21 Vesicle coat com 97.6 0.27 5.8E-06 56.2 41.0 480 42-628 61-554 (898)
103 KOG2022 Nuclear transport rece 97.5 0.45 9.8E-06 57.5 55.8 355 339-714 477-868 (982)
104 PF11865 DUF3385: Domain of un 97.5 0.00079 1.7E-08 66.7 10.7 114 167-284 7-158 (160)
105 KOG2022 Nuclear transport rece 97.5 0.48 1E-05 57.3 62.1 174 425-611 461-641 (982)
106 PF12717 Cnd1: non-SMC mitotic 97.4 0.0042 9E-08 63.4 15.8 111 343-475 2-113 (178)
107 PF05804 KAP: Kinesin-associat 97.4 0.097 2.1E-06 64.1 29.7 367 443-880 266-651 (708)
108 KOG1993 Nuclear transport rece 97.4 0.42 9.1E-06 57.0 33.0 294 143-496 501-810 (978)
109 KOG2032 Uncharacterized conser 97.4 0.037 8.1E-07 62.2 23.7 121 424-545 256-376 (533)
110 KOG2259 Uncharacterized conser 97.4 0.0067 1.5E-07 69.9 18.3 102 373-496 201-308 (823)
111 PF05004 IFRD: Interferon-rela 97.4 0.018 3.9E-07 64.0 21.7 196 377-593 50-260 (309)
112 KOG1525 Sister chromatid cohes 97.4 0.94 2E-05 58.9 46.2 341 39-455 41-405 (1266)
113 PF14500 MMS19_N: Dos2-interac 97.4 0.025 5.4E-07 61.1 21.4 232 343-608 13-256 (262)
114 COG1413 FOG: HEAT repeat [Ener 97.4 0.039 8.4E-07 63.2 24.7 187 5-237 44-240 (335)
115 KOG4524 Uncharacterized conser 97.4 0.084 1.8E-06 64.2 27.1 346 148-508 567-983 (1014)
116 KOG1078 Vesicle coat complex C 97.3 0.35 7.5E-06 57.7 30.9 121 888-1036 416-537 (865)
117 PF14500 MMS19_N: Dos2-interac 97.3 0.15 3.4E-06 55.0 26.7 240 142-433 12-257 (262)
118 PF05918 API5: Apoptosis inhib 97.3 0.073 1.6E-06 62.7 25.6 298 18-366 36-353 (556)
119 PF12719 Cnd3: Nuclear condens 97.3 0.11 2.3E-06 58.2 26.1 190 148-376 2-203 (298)
120 PF08506 Cse1: Cse1; InterPro 97.3 0.19 4.1E-06 57.4 27.7 239 241-534 72-369 (370)
121 KOG0946 ER-Golgi vesicle-tethe 97.2 0.82 1.8E-05 54.6 40.6 399 170-654 22-456 (970)
122 TIGR02270 conserved hypothetic 97.2 0.015 3.2E-07 67.0 18.6 152 5-199 55-207 (410)
123 PLN03076 ARF guanine nucleotid 97.2 0.094 2E-06 70.5 28.1 266 426-695 1182-1513(1780)
124 PF08506 Cse1: Cse1; InterPro 97.2 0.23 5E-06 56.7 27.6 209 185-443 111-363 (370)
125 PF05918 API5: Apoptosis inhib 97.2 0.17 3.7E-06 59.7 26.8 294 342-674 35-344 (556)
126 KOG0946 ER-Golgi vesicle-tethe 97.2 0.56 1.2E-05 56.0 29.9 199 80-286 18-244 (970)
127 PF05804 KAP: Kinesin-associat 97.1 1.2 2.6E-05 54.9 37.9 363 189-630 268-650 (708)
128 PF13251 DUF4042: Domain of un 97.1 0.0067 1.5E-07 60.9 12.7 152 270-457 2-176 (182)
129 COG5656 SXM1 Importin, protein 97.1 1.1 2.4E-05 53.3 55.6 279 345-652 476-780 (970)
130 PF04826 Arm_2: Armadillo-like 97.1 0.02 4.3E-07 61.4 16.5 192 3-204 11-210 (254)
131 KOG1058 Vesicle coat complex C 97.1 1.1 2.5E-05 53.2 35.9 338 166-593 95-466 (948)
132 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00074 1.6E-08 53.6 4.0 55 143-197 1-55 (55)
133 PF02985 HEAT: HEAT repeat; I 97.0 0.00073 1.6E-08 46.1 3.3 30 47-76 1-30 (31)
134 PF12231 Rif1_N: Rap1-interact 97.0 0.26 5.7E-06 56.8 25.7 262 13-283 2-303 (372)
135 KOG1078 Vesicle coat complex C 97.0 1.5 3.2E-05 52.7 35.5 281 373-713 248-532 (865)
136 PLN03076 ARF guanine nucleotid 96.9 1 2.2E-05 61.2 33.4 372 75-478 1080-1513(1780)
137 PF13646 HEAT_2: HEAT repeats; 96.9 0.0052 1.1E-07 54.5 8.9 88 129-235 1-88 (88)
138 PF13646 HEAT_2: HEAT repeats; 96.9 0.0035 7.5E-08 55.6 7.6 86 6-109 1-88 (88)
139 COG5096 Vesicle coat complex, 96.8 2.1 4.5E-05 52.6 40.5 168 380-591 29-196 (757)
140 PF13251 DUF4042: Domain of un 96.8 0.014 3E-07 58.6 11.7 142 385-541 1-175 (182)
141 KOG0891 DNA-dependent protein 96.8 4.8 0.0001 56.1 47.9 114 553-669 642-761 (2341)
142 cd00020 ARM Armadillo/beta-cat 96.8 0.0057 1.2E-07 57.8 8.7 107 171-282 8-119 (120)
143 cd00256 VATPase_H VATPase_H, r 96.7 1.2 2.6E-05 51.4 28.1 102 142-244 67-178 (429)
144 PF10274 ParcG: Parkin co-regu 96.7 0.023 5.1E-07 56.4 12.2 93 368-474 36-131 (183)
145 KOG2062 26S proteasome regulat 96.7 2.2 4.8E-05 50.8 40.9 108 936-1050 564-672 (929)
146 TIGR02270 conserved hypothetic 96.7 0.18 3.9E-06 58.3 21.0 208 372-670 88-295 (410)
147 COG1413 FOG: HEAT repeat [Ener 96.6 0.039 8.6E-07 63.2 15.9 183 813-1030 45-241 (335)
148 PF08167 RIX1: rRNA processing 96.6 0.065 1.4E-06 53.7 15.3 132 167-304 22-164 (165)
149 cd00020 ARM Armadillo/beta-cat 96.6 0.0092 2E-07 56.4 8.9 110 427-539 8-119 (120)
150 KOG4413 26S proteasome regulat 96.5 1.6 3.4E-05 46.7 29.3 89 190-283 63-157 (524)
151 PF01603 B56: Protein phosphat 96.5 0.88 1.9E-05 53.1 25.6 304 19-366 41-378 (409)
152 PF05536 Neurochondrin: Neuroc 96.4 3.5 7.6E-05 49.9 40.3 234 4-243 5-265 (543)
153 KOG0413 Uncharacterized conser 96.4 3.9 8.5E-05 50.1 38.2 126 575-714 945-1074(1529)
154 KOG0392 SNF2 family DNA-depend 96.3 0.065 1.4E-06 66.6 15.0 235 45-286 647-928 (1549)
155 KOG2025 Chromosome condensatio 96.3 0.045 9.7E-07 64.0 12.9 164 925-1125 83-255 (892)
156 PF08167 RIX1: rRNA processing 96.3 0.11 2.3E-06 52.1 14.3 138 421-568 20-164 (165)
157 PF08064 UME: UME (NUC010) dom 96.3 0.054 1.2E-06 49.6 11.0 91 209-304 12-105 (107)
158 PF12231 Rif1_N: Rap1-interact 96.3 3.2 7E-05 47.9 32.9 281 386-714 9-304 (372)
159 smart00802 UME Domain in UVSB 96.2 0.06 1.3E-06 48.9 11.0 91 209-304 12-105 (107)
160 cd00256 VATPase_H VATPase_H, r 96.2 2.3 4.9E-05 49.2 26.1 294 573-880 113-427 (429)
161 PF04826 Arm_2: Armadillo-like 96.2 0.054 1.2E-06 58.1 12.2 144 131-283 16-163 (254)
162 PF10274 ParcG: Parkin co-regu 96.2 0.045 9.8E-07 54.4 10.6 95 465-565 36-130 (183)
163 PF04118 Dopey_N: Dopey, N-ter 96.1 0.67 1.5E-05 51.1 20.7 190 464-668 51-251 (307)
164 PF12719 Cnd3: Nuclear condens 96.1 0.28 6E-06 54.9 18.4 129 531-672 3-144 (298)
165 KOG0567 HEAT repeat-containing 96.1 0.4 8.6E-06 50.0 17.3 248 5-283 4-280 (289)
166 PF10363 DUF2435: Protein of u 96.0 0.066 1.4E-06 47.3 9.9 87 4-96 3-89 (92)
167 PF08767 CRM1_C: CRM1 C termin 96.0 0.33 7.2E-06 54.5 18.0 192 385-589 42-243 (319)
168 PF08064 UME: UME (NUC010) dom 95.9 0.068 1.5E-06 49.0 10.1 98 162-260 3-105 (107)
169 KOG2021 Nuclear mRNA export fa 95.9 5.7 0.00012 47.6 54.0 489 42-610 185-746 (980)
170 KOG0414 Chromosome condensatio 95.9 8.1 0.00018 49.0 63.7 102 342-459 325-432 (1251)
171 KOG2025 Chromosome condensatio 95.8 0.23 5E-06 58.4 15.6 104 3-108 84-188 (892)
172 KOG2137 Protein kinase [Signal 95.7 2 4.4E-05 51.4 23.2 274 5-304 240-517 (700)
173 KOG1077 Vesicle coat complex A 95.6 7.1 0.00015 46.5 38.9 115 42-165 107-223 (938)
174 PF11864 DUF3384: Domain of un 95.3 8.8 0.00019 45.8 40.4 429 143-668 4-463 (464)
175 smart00802 UME Domain in UVSB 95.3 0.07 1.5E-06 48.5 7.5 97 554-650 6-104 (107)
176 PF11864 DUF3384: Domain of un 95.2 8.4 0.00018 46.0 27.1 266 422-712 24-329 (464)
177 KOG2973 Uncharacterized conser 95.2 4.4 9.6E-05 43.5 21.2 270 5-286 4-318 (353)
178 KOG2549 Transcription initiati 95.1 0.99 2.1E-05 52.1 17.1 59 341-399 310-370 (576)
179 PF02985 HEAT: HEAT repeat; I 95.0 0.039 8.4E-07 37.6 3.9 30 171-200 1-30 (31)
180 KOG1243 Protein kinase [Genera 95.0 0.23 5E-06 58.8 12.6 224 43-286 290-518 (690)
181 PF10521 DUF2454: Protein of u 95.0 0.57 1.2E-05 51.7 15.2 152 458-614 110-277 (282)
182 KOG1077 Vesicle coat complex A 94.9 11 0.00025 44.9 40.9 302 169-541 110-434 (938)
183 PF10521 DUF2454: Protein of u 94.8 0.77 1.7E-05 50.7 15.6 157 103-262 95-276 (282)
184 PF12054 DUF3535: Domain of un 94.8 5.1 0.00011 47.1 23.0 77 61-138 102-179 (441)
185 KOG2933 Uncharacterized conser 94.7 0.37 7.9E-06 51.4 11.8 150 426-593 88-237 (334)
186 PF11865 DUF3385: Domain of un 94.7 0.33 7.1E-06 48.3 11.1 77 462-540 80-157 (160)
187 KOG2081 Nuclear transport regu 94.6 12 0.00026 43.8 35.2 357 21-400 35-458 (559)
188 COG5116 RPN2 26S proteasome re 94.4 1.1 2.5E-05 51.3 15.3 108 936-1051 561-670 (926)
189 KOG2160 Armadillo/beta-catenin 94.4 2.5 5.3E-05 46.6 17.5 181 98-285 97-284 (342)
190 KOG2137 Protein kinase [Signal 94.3 2.6 5.6E-05 50.6 18.8 241 485-755 289-535 (700)
191 KOG2933 Uncharacterized conser 94.3 1.3 2.9E-05 47.4 14.7 163 343-528 102-265 (334)
192 KOG1243 Protein kinase [Genera 94.2 0.48 1E-05 56.2 12.5 247 435-713 263-515 (690)
193 KOG4413 26S proteasome regulat 94.1 10 0.00022 40.9 28.2 203 53-260 50-264 (524)
194 KOG2160 Armadillo/beta-catenin 94.1 3.7 7.9E-05 45.3 18.2 184 14-200 93-283 (342)
195 KOG1949 Uncharacterized conser 94.1 0.37 8E-06 56.5 11.1 150 514-670 177-330 (1005)
196 PF13001 Ecm29: Proteasome sta 94.0 1.4 3E-05 53.1 16.5 116 167-286 316-446 (501)
197 KOG2213 Apoptosis inhibitor 5/ 93.8 2.2 4.8E-05 47.0 15.6 53 38-93 53-105 (460)
198 COG5657 CSE1 CAS/CSE protein i 93.8 23 0.0005 43.9 40.0 99 16-116 50-155 (947)
199 KOG0567 HEAT repeat-containing 93.7 4.1 8.8E-05 42.8 16.6 194 371-627 68-278 (289)
200 KOG1517 Guanine nucleotide bin 93.6 3.9 8.5E-05 50.8 18.8 163 421-597 471-678 (1387)
201 smart00638 LPD_N Lipoprotein N 93.6 18 0.00038 44.9 25.9 112 169-290 392-516 (574)
202 KOG1949 Uncharacterized conser 93.5 2.7 5.9E-05 49.7 16.5 184 945-1146 148-350 (1005)
203 KOG4524 Uncharacterized conser 93.5 27 0.00059 43.7 42.8 94 509-608 801-895 (1014)
204 KOG1293 Proteins containing ar 93.4 22 0.00048 42.4 34.4 142 383-541 390-534 (678)
205 KOG2149 Uncharacterized conser 93.2 1.2 2.5E-05 49.8 12.6 121 342-476 71-191 (393)
206 KOG2149 Uncharacterized conser 92.9 1.3 2.8E-05 49.4 12.5 114 429-544 61-174 (393)
207 PF01347 Vitellogenin_N: Lipop 92.7 13 0.00029 46.5 23.3 111 169-289 430-559 (618)
208 COG5095 TAF6 Transcription ini 92.7 2.7 5.8E-05 44.4 13.6 77 552-628 270-358 (450)
209 COG5095 TAF6 Transcription ini 92.5 2.8 6E-05 44.3 13.4 137 225-399 213-359 (450)
210 PF10363 DUF2435: Protein of u 92.1 1.2 2.6E-05 39.4 9.1 71 142-213 16-86 (92)
211 COG5116 RPN2 26S proteasome re 92.1 1.4 3.1E-05 50.5 11.7 151 50-220 520-674 (926)
212 cd08050 TAF6 TATA Binding Prot 91.9 4.4 9.5E-05 46.0 15.7 152 419-587 175-337 (343)
213 PF04118 Dopey_N: Dopey, N-ter 91.9 8.9 0.00019 42.5 17.5 143 426-587 54-198 (307)
214 KOG2549 Transcription initiati 91.5 7.9 0.00017 45.1 16.7 150 425-587 206-367 (576)
215 COG5218 YCG1 Chromosome conden 91.3 35 0.00077 40.0 36.8 170 862-1036 467-646 (885)
216 PF01603 B56: Protein phosphat 91.3 10 0.00022 44.3 18.4 91 489-590 275-370 (409)
217 KOG1293 Proteins containing ar 91.1 41 0.00089 40.3 23.3 267 13-286 241-536 (678)
218 KOG1789 Endocytosis protein RM 90.9 53 0.0012 41.4 25.1 180 997-1198 1998-2190(2235)
219 cd08050 TAF6 TATA Binding Prot 90.9 1.8 4E-05 49.1 11.4 147 80-237 174-338 (343)
220 PF13001 Ecm29: Proteasome sta 90.7 46 0.001 40.2 29.7 361 4-402 23-446 (501)
221 KOG1517 Guanine nucleotide bin 90.6 2.2 4.7E-05 52.8 11.9 159 15-201 568-734 (1387)
222 KOG2140 Uncharacterized conser 90.4 40 0.00086 39.1 20.8 107 107-221 219-329 (739)
223 PF11698 V-ATPase_H_C: V-ATPas 90.3 0.32 6.9E-06 44.8 3.8 62 14-75 54-115 (119)
224 KOG1837 Uncharacterized conser 90.3 12 0.00025 49.2 18.3 86 185-276 1519-1604(1621)
225 KOG1848 Uncharacterized conser 90.3 40 0.00087 43.9 22.4 225 54-283 850-1132(1610)
226 KOG0803 Predicted E3 ubiquitin 90.2 19 0.0004 47.6 20.5 105 172-280 43-150 (1312)
227 PF12530 DUF3730: Protein of u 90.0 30 0.00065 37.0 20.2 144 373-541 3-152 (234)
228 PF07571 DUF1546: Protein of u 89.9 1.1 2.4E-05 39.7 6.8 57 341-397 18-76 (92)
229 KOG1525 Sister chromatid cohes 89.8 84 0.0018 41.8 52.3 253 427-701 182-441 (1266)
230 PF01347 Vitellogenin_N: Lipop 89.7 28 0.0006 43.7 21.8 123 224-392 449-582 (618)
231 PF05327 RRN3: RNA polymerase 89.6 43 0.00094 41.1 22.5 150 148-303 51-213 (563)
232 KOG0889 Histone acetyltransfer 88.4 1.5E+02 0.0033 43.1 63.5 163 419-591 626-797 (3550)
233 KOG2081 Nuclear transport regu 88.1 62 0.0013 38.2 38.7 112 504-628 333-456 (559)
234 PF08389 Xpo1: Exportin 1-like 88.1 4.2 9.2E-05 39.8 10.5 140 61-234 3-148 (148)
235 KOG3961 Uncharacterized conser 88.1 1.1 2.4E-05 45.0 5.8 94 1093-1200 107-201 (262)
236 PF12074 DUF3554: Domain of un 87.8 47 0.001 37.9 20.2 186 380-594 33-239 (339)
237 PF08767 CRM1_C: CRM1 C termin 87.8 19 0.00042 40.5 16.5 168 344-525 42-228 (319)
238 KOG2122 Beta-catenin-binding p 87.6 1.1E+02 0.0024 40.5 25.6 101 343-457 365-469 (2195)
239 PF10350 DUF2428: Putative dea 87.5 26 0.00056 38.0 16.8 171 342-523 60-252 (255)
240 KOG3723 PH domain protein Melt 87.2 7.6 0.00017 44.8 12.4 97 1023-1147 183-284 (851)
241 PF12074 DUF3554: Domain of un 87.0 25 0.00055 40.1 17.3 176 40-219 55-255 (339)
242 PF03224 V-ATPase_H_N: V-ATPas 86.9 17 0.00038 40.8 15.7 221 6-232 60-306 (312)
243 PF05536 Neurochondrin: Neuroc 86.7 85 0.0018 38.3 38.1 193 86-286 7-216 (543)
244 PF12333 Ipi1_N: Rix1 complex 86.7 1.8 3.9E-05 39.3 6.1 61 243-306 3-64 (102)
245 KOG2122 Beta-catenin-binding p 86.6 1.2E+02 0.0026 40.2 23.0 71 601-673 529-603 (2195)
246 PF04931 DNA_pol_phi: DNA poly 86.3 85 0.0018 40.4 23.1 48 248-305 586-633 (784)
247 KOG2759 Vacuolar H+-ATPase V1 86.2 66 0.0014 36.5 21.1 290 574-880 127-440 (442)
248 smart00638 LPD_N Lipoprotein N 85.6 74 0.0016 39.4 21.8 18 862-879 459-476 (574)
249 PF08569 Mo25: Mo25-like; Int 83.6 84 0.0018 35.5 21.9 178 343-541 90-284 (335)
250 KOG1851 Uncharacterized conser 83.2 1.8E+02 0.0039 39.0 31.3 140 340-501 1538-1681(1710)
251 PF12830 Nipped-B_C: Sister ch 83.2 4.9 0.00011 41.3 8.2 70 4-78 8-77 (187)
252 PF04931 DNA_pol_phi: DNA poly 83.0 5.3 0.00012 51.2 10.3 34 206-241 587-620 (784)
253 PF03224 V-ATPase_H_N: V-ATPas 82.5 91 0.002 35.1 21.0 117 142-260 70-200 (312)
254 PF14664 RICTOR_N: Rapamycin-i 82.0 61 0.0013 37.3 17.2 209 857-1091 33-270 (371)
255 PF12333 Ipi1_N: Rix1 complex 81.9 2.9 6.4E-05 37.9 5.3 62 458-521 2-63 (102)
256 PF12530 DUF3730: Protein of u 81.4 80 0.0017 33.7 22.2 149 211-400 3-152 (234)
257 PF14664 RICTOR_N: Rapamycin-i 81.0 1.1E+02 0.0024 35.2 21.3 108 425-539 24-136 (371)
258 PF04388 Hamartin: Hamartin pr 80.0 18 0.00039 45.1 13.0 81 225-307 83-164 (668)
259 PF11698 V-ATPase_H_C: V-ATPas 79.3 8.3 0.00018 35.7 7.3 68 131-199 47-115 (119)
260 KOG0803 Predicted E3 ubiquitin 78.8 2.3E+02 0.005 38.1 22.4 201 375-595 46-268 (1312)
261 PF00514 Arm: Armadillo/beta-c 78.0 3 6.5E-05 30.4 3.4 29 46-74 12-40 (41)
262 KOG3961 Uncharacterized conser 77.9 12 0.00026 37.9 8.3 93 206-303 112-207 (262)
263 KOG2011 Sister chromatid cohes 77.9 2.3E+02 0.0049 36.8 23.6 212 144-393 170-393 (1048)
264 KOG1048 Neural adherens juncti 77.4 1.6E+02 0.0034 36.5 18.9 129 607-740 526-666 (717)
265 PF14225 MOR2-PAG1_C: Cell mor 77.2 79 0.0017 34.3 15.2 88 448-542 168-256 (262)
266 PF12830 Nipped-B_C: Sister ch 77.0 15 0.00033 37.7 9.5 81 961-1045 8-88 (187)
267 KOG0929 Guanine nucleotide exc 76.9 82 0.0018 42.2 17.6 122 572-694 1185-1321(1514)
268 PF05997 Nop52: Nucleolar prot 76.7 1E+02 0.0023 32.4 18.0 87 8-94 4-92 (217)
269 PF07539 DRIM: Down-regulated 76.4 10 0.00022 36.7 7.4 49 43-95 14-62 (141)
270 KOG2213 Apoptosis inhibitor 5/ 76.2 1.4E+02 0.0031 33.6 19.6 32 169-200 60-91 (460)
271 PF08389 Xpo1: Exportin 1-like 76.1 8.8 0.00019 37.5 7.4 70 553-624 76-148 (148)
272 PF08161 NUC173: NUC173 domain 75.9 63 0.0014 33.4 13.5 158 143-305 14-181 (198)
273 PF03542 Tuberin: Tuberin; In 75.8 1.5E+02 0.0032 33.8 17.4 166 128-305 142-329 (356)
274 KOG1837 Uncharacterized conser 75.6 3E+02 0.0065 37.1 32.1 92 942-1033 1519-1613(1621)
275 PF05327 RRN3: RNA polymerase 75.1 2.1E+02 0.0046 35.2 21.2 57 143-203 88-158 (563)
276 PF00514 Arm: Armadillo/beta-c 74.7 4.7 0.0001 29.4 3.6 29 849-877 12-40 (41)
277 PF11640 TAN: Telomere-length 73.9 35 0.00077 33.7 10.8 56 1-56 1-58 (155)
278 PF07571 DUF1546: Protein of u 73.7 12 0.00026 33.1 6.7 58 142-199 19-78 (92)
279 PF03810 IBN_N: Importin-beta 73.1 7.8 0.00017 32.9 5.3 48 8-55 18-75 (77)
280 PF12765 Cohesin_HEAT: HEAT re 72.9 4.8 0.00011 29.6 3.3 41 351-393 1-41 (42)
281 PF08146 BP28CT: BP28CT (NUC21 72.8 64 0.0014 31.8 12.1 77 185-261 36-118 (153)
282 PF04510 DUF577: Family of unk 71.2 47 0.001 32.9 10.4 148 127-284 3-165 (174)
283 KOG2011 Sister chromatid cohes 71.1 3E+02 0.0065 35.8 19.9 197 920-1141 279-484 (1048)
284 PF14222 MOR2-PAG1_N: Cell mor 70.7 1.4E+02 0.0031 36.4 16.9 234 899-1163 9-287 (552)
285 KOG1851 Uncharacterized conser 69.4 4.1E+02 0.0088 36.0 34.3 120 482-611 1540-1659(1710)
286 PF10193 Telomere_reg-2: Telom 69.1 38 0.00082 31.5 9.1 51 248-303 4-57 (114)
287 PF12783 Sec7_N: Guanine nucle 67.9 52 0.0011 33.0 10.8 97 143-239 36-146 (168)
288 PF09324 DUF1981: Domain of un 67.7 25 0.00055 30.7 7.3 63 132-195 22-84 (86)
289 PF12765 Cohesin_HEAT: HEAT re 67.3 8.6 0.00019 28.3 3.6 40 153-194 3-42 (42)
290 cd03569 VHS_Hrs_Vps27p VHS dom 65.7 55 0.0012 31.8 9.9 84 210-299 43-128 (142)
291 KOG0929 Guanine nucleotide exc 65.6 2.5E+02 0.0055 37.9 18.2 122 179-304 1183-1320(1514)
292 PF08161 NUC173: NUC173 domain 65.1 74 0.0016 32.9 11.2 59 445-505 19-77 (198)
293 smart00288 VHS Domain present 64.4 59 0.0013 31.1 9.8 74 210-286 39-114 (133)
294 COG5218 YCG1 Chromosome conden 64.4 3.1E+02 0.0067 32.8 42.8 121 108-232 71-192 (885)
295 PF11701 UNC45-central: Myosin 63.6 25 0.00053 34.9 7.3 141 51-196 8-156 (157)
296 PF09324 DUF1981: Domain of un 63.1 40 0.00087 29.4 7.6 68 208-279 17-84 (86)
297 cd03565 VHS_Tom1 VHS domain fa 62.9 79 0.0017 30.7 10.4 78 209-287 39-119 (141)
298 PF11935 DUF3453: Domain of un 62.5 2.2E+02 0.0048 30.5 17.2 87 209-301 115-210 (239)
299 cd03568 VHS_STAM VHS domain fa 62.4 78 0.0017 30.8 10.2 73 426-499 37-111 (144)
300 KOG1926 Predicted regulator of 61.6 4.8E+02 0.01 34.0 23.3 68 4-74 73-140 (1129)
301 PF03130 HEAT_PBS: PBS lyase H 61.3 7.9 0.00017 25.2 2.2 25 865-892 1-25 (27)
302 PF03542 Tuberin: Tuberin; In 60.6 1.8E+02 0.0038 33.2 14.1 141 7-157 144-302 (356)
303 cd03567 VHS_GGA VHS domain fam 60.6 1.7E+02 0.0036 28.4 12.2 62 142-203 51-120 (139)
304 KOG2842 Interferon-related pro 60.5 1.1E+02 0.0023 34.5 11.7 101 486-591 77-178 (427)
305 PF14225 MOR2-PAG1_C: Cell mor 60.5 2.5E+02 0.0055 30.5 19.7 212 511-741 7-241 (262)
306 PF00790 VHS: VHS domain; Int 60.0 68 0.0015 31.1 9.5 76 425-500 41-120 (140)
307 cd03572 ENTH_epsin_related ENT 59.9 72 0.0016 29.9 9.0 54 28-82 21-74 (122)
308 PF10350 DUF2428: Putative dea 59.7 2.6E+02 0.0056 30.3 15.0 163 143-305 61-250 (255)
309 cd03572 ENTH_epsin_related ENT 59.6 86 0.0019 29.4 9.4 82 1002-1090 38-119 (122)
310 cd03568 VHS_STAM VHS domain fa 59.5 66 0.0014 31.3 9.2 61 142-202 50-113 (144)
311 PF11935 DUF3453: Domain of un 59.3 2.2E+02 0.0048 30.5 14.1 70 379-457 2-74 (239)
312 PF08569 Mo25: Mo25-like; Int 58.9 3.1E+02 0.0068 31.0 26.4 195 208-456 76-284 (335)
313 smart00288 VHS Domain present 58.4 1E+02 0.0022 29.6 10.2 73 426-498 37-111 (133)
314 PF14911 MMS22L_C: S-phase gen 58.0 3.4E+02 0.0073 31.1 25.4 240 167-478 66-348 (373)
315 KOG1877 Putative transmembrane 58.0 3.8E+02 0.0083 33.8 17.0 124 382-521 69-203 (819)
316 PF12783 Sec7_N: Guanine nucle 57.7 2E+02 0.0043 28.8 12.9 78 120-199 66-146 (168)
317 cd03561 VHS VHS domain family; 57.7 1.7E+02 0.0037 28.0 11.7 93 142-242 17-115 (133)
318 KOG2005 26S proteasome regulat 57.3 1.4E+02 0.003 36.1 12.5 71 808-881 449-521 (878)
319 PF04388 Hamartin: Hamartin pr 56.6 1.7E+02 0.0037 36.7 14.3 152 46-216 4-160 (668)
320 PF00790 VHS: VHS domain; Int 56.6 1.9E+02 0.0042 27.9 12.5 61 142-202 55-121 (140)
321 PF12397 U3snoRNP10: U3 small 56.3 52 0.0011 30.9 7.8 73 638-714 2-75 (121)
322 cd03569 VHS_Hrs_Vps27p VHS dom 55.0 1.2E+02 0.0027 29.4 10.2 73 426-499 41-115 (142)
323 KOG4199 Uncharacterized conser 54.4 3.4E+02 0.0075 30.1 25.6 228 127-396 189-441 (461)
324 PF08713 DNA_alkylation: DNA a 53.9 16 0.00035 38.4 4.4 91 946-1043 106-196 (213)
325 cd00197 VHS_ENTH_ANTH VHS, ENT 53.6 65 0.0014 29.9 8.0 74 206-282 35-114 (115)
326 PF12612 TFCD_C: Tubulin foldi 53.2 2.6E+02 0.0056 28.8 13.1 33 424-456 5-37 (193)
327 KOG2256 Predicted protein invo 52.6 5E+02 0.011 31.7 16.2 170 367-563 279-472 (661)
328 PF10193 Telomere_reg-2: Telom 52.3 34 0.00075 31.7 5.7 80 212-294 7-90 (114)
329 KOG2005 26S proteasome regulat 52.2 2.8E+02 0.0062 33.6 13.9 84 641-736 451-536 (878)
330 COG5098 Chromosome condensatio 51.8 5.4E+02 0.012 31.6 55.3 101 342-458 312-418 (1128)
331 COG5138 Uncharacterized conser 50.5 74 0.0016 30.0 7.2 91 1090-1200 76-166 (168)
332 KOG2973 Uncharacterized conser 49.6 77 0.0017 34.5 8.3 94 142-239 16-111 (353)
333 PF12243 CTK3: CTD kinase subu 48.5 2.4E+02 0.0052 27.2 10.7 102 176-285 14-121 (139)
334 PF12612 TFCD_C: Tubulin foldi 48.4 1.1E+02 0.0023 31.6 9.3 149 367-541 4-159 (193)
335 cd03567 VHS_GGA VHS domain fam 48.0 1.8E+02 0.0038 28.2 9.9 74 641-714 37-117 (139)
336 PF04510 DUF577: Family of unk 47.7 3E+02 0.0065 27.5 13.2 85 360-454 74-163 (174)
337 PF12054 DUF3535: Domain of un 47.3 5.5E+02 0.012 30.4 22.8 97 440-541 101-209 (441)
338 smart00185 ARM Armadillo/beta- 46.8 19 0.00042 25.7 2.6 28 47-74 13-40 (41)
339 PF11919 DUF3437: Domain of un 46.2 34 0.00073 30.1 4.3 57 226-286 5-61 (90)
340 COG5110 RPN1 26S proteasome re 45.8 5.8E+02 0.013 30.3 18.4 70 808-880 447-518 (881)
341 cd00197 VHS_ENTH_ANTH VHS, ENT 45.7 2.5E+02 0.0054 25.9 10.6 76 1001-1088 36-113 (115)
342 PF11841 DUF3361: Domain of un 45.6 51 0.0011 32.4 5.9 75 16-90 72-146 (160)
343 COG5101 CRM1 Importin beta-rel 45.5 6.3E+02 0.014 30.6 32.7 160 42-204 477-653 (1053)
344 PF12397 U3snoRNP10: U3 small 45.1 1.1E+02 0.0023 28.7 8.0 70 42-113 2-74 (121)
345 smart00185 ARM Armadillo/beta- 44.7 28 0.00061 24.8 3.2 28 850-877 13-40 (41)
346 KOG1848 Uncharacterized conser 44.6 9.5E+02 0.021 32.4 20.5 191 12-204 850-1087(1610)
347 PF04078 Rcd1: Cell differenti 44.4 1.7E+02 0.0036 31.4 9.8 40 266-305 108-149 (262)
348 COG5101 CRM1 Importin beta-rel 44.0 6.7E+02 0.014 30.4 40.3 104 1016-1131 799-910 (1053)
349 PF06685 DUF1186: Protein of u 43.9 3.8E+02 0.0081 28.9 12.5 45 1006-1051 115-161 (249)
350 cd03561 VHS VHS domain family; 43.0 3.1E+02 0.0066 26.2 12.0 79 83-162 36-116 (133)
351 PF14631 FancD2: Fanconi anaem 42.8 3E+02 0.0064 37.9 14.2 95 152-248 417-511 (1426)
352 PF09759 Atx10homo_assoc: Spin 42.3 69 0.0015 29.0 5.7 59 227-287 3-63 (102)
353 PF08146 BP28CT: BP28CT (NUC21 41.6 3.1E+02 0.0067 27.0 10.8 36 60-95 35-70 (153)
354 PF04147 Nop14: Nop14-like fam 41.4 5.6E+02 0.012 33.3 16.0 60 418-477 464-526 (840)
355 KOG4541 Nuclear transport rece 40.9 5.6E+02 0.012 30.5 13.8 135 143-286 571-718 (748)
356 PF12726 SEN1_N: SEN1 N termin 40.3 9E+02 0.02 30.9 40.5 230 46-278 77-341 (727)
357 KOG0889 Histone acetyltransfer 39.8 1.6E+03 0.035 33.8 64.0 182 389-587 650-865 (3550)
358 PF14961 BROMI: Broad-minded p 39.8 2.9E+02 0.0064 36.2 12.4 72 5-78 162-234 (1296)
359 COG5110 RPN1 26S proteasome re 39.7 7.2E+02 0.016 29.6 17.5 52 641-699 449-500 (881)
360 PF14911 MMS22L_C: S-phase gen 39.5 6.4E+02 0.014 28.9 19.9 80 1070-1149 267-349 (373)
361 PF11701 UNC45-central: Myosin 38.4 3.9E+02 0.0085 26.4 11.1 131 142-278 18-154 (157)
362 KOG1048 Neural adherens juncti 37.0 9.4E+02 0.02 30.1 21.5 65 48-113 235-304 (717)
363 cd03565 VHS_Tom1 VHS domain fa 36.9 3.6E+02 0.0077 26.2 10.3 74 426-499 38-116 (141)
364 smart00567 EZ_HEAT E-Z type HE 35.5 45 0.00098 22.1 2.8 14 343-356 1-14 (30)
365 cd06561 AlkD_like A new struct 33.0 1E+02 0.0022 31.8 6.4 90 947-1043 93-182 (197)
366 KOG3036 Protein involved in ce 31.7 6.6E+02 0.014 26.8 13.8 41 265-305 136-178 (293)
367 PF14668 RICTOR_V: Rapamycin-i 31.6 1E+02 0.0022 26.0 4.7 53 617-672 4-59 (73)
368 COG5234 CIN1 Beta-tubulin fold 31.2 4E+02 0.0086 32.7 10.9 151 42-197 242-414 (993)
369 PF14668 RICTOR_V: Rapamycin-i 30.7 1.4E+02 0.0031 25.1 5.5 54 187-241 4-60 (73)
370 PF11919 DUF3437: Domain of un 29.8 1.1E+02 0.0023 27.0 4.8 56 344-400 4-59 (90)
371 PF14228 MOR2-PAG1_mid: Cell m 28.8 1.2E+03 0.027 31.2 16.0 51 149-199 936-986 (1120)
372 PF14631 FancD2: Fanconi anaem 28.8 1.8E+03 0.038 30.8 32.9 169 353-543 418-586 (1426)
373 PF14868 DUF4487: Domain of un 27.4 1.2E+03 0.026 28.5 27.1 77 464-541 476-553 (559)
374 cd00872 PI3Ka_I Phosphoinositi 27.2 82 0.0018 31.6 4.2 43 854-896 74-118 (171)
375 KOG1087 Cytosolic sorting prot 27.1 5.7E+02 0.012 30.4 11.5 88 208-299 38-127 (470)
376 PF09462 Mus7: Mus7/MMS22 fami 27.1 1.3E+03 0.028 28.7 19.5 47 441-489 468-514 (614)
377 PF06580 His_kinase: Histidine 26.7 2.6E+02 0.0056 24.1 6.7 56 1118-1177 15-70 (82)
378 KOG1877 Putative transmembrane 26.5 1.4E+03 0.031 29.0 15.5 113 24-137 76-203 (819)
379 KOG1832 HIV-1 Vpr-binding prot 26.4 34 0.00073 42.1 1.5 17 16-32 674-690 (1516)
380 COG5657 CSE1 CAS/CSE protein i 26.3 1.5E+03 0.032 29.1 28.6 123 53-220 11-135 (947)
381 KOG2759 Vacuolar H+-ATPase V1 26.0 1.1E+03 0.023 27.4 26.4 77 419-499 359-439 (442)
382 KOG2085 Serine/threonine prote 25.2 7.6E+02 0.016 28.4 11.3 218 684-911 177-414 (457)
383 PRK13689 hypothetical protein; 24.4 1.6E+02 0.0034 24.6 4.4 41 73-114 3-43 (75)
384 PF08324 PUL: PUL domain; Int 24.4 6.5E+02 0.014 27.3 11.2 159 425-589 62-230 (268)
385 PF13324 GCIP: Grap2 and cycli 24.0 9.7E+02 0.021 26.2 16.8 13 229-241 98-110 (275)
386 PF02854 MIF4G: MIF4G domain; 24.0 7.7E+02 0.017 25.0 12.8 165 6-180 4-180 (209)
387 PF14228 MOR2-PAG1_mid: Cell m 23.8 1.9E+03 0.041 29.5 24.7 55 484-540 518-572 (1120)
388 KOG4199 Uncharacterized conser 23.5 1.1E+03 0.023 26.5 25.3 177 122-302 235-422 (461)
389 PF11841 DUF3361: Domain of un 23.5 7.4E+02 0.016 24.6 11.9 68 142-209 73-141 (160)
390 KOG2085 Serine/threonine prote 23.4 1.2E+03 0.026 27.0 15.3 92 84-179 177-270 (457)
391 cd00869 PI3Ka_II Phosphoinosit 23.0 1.1E+02 0.0024 30.6 4.2 35 862-896 84-118 (169)
392 PF04869 Uso1_p115_head: Uso1 23.0 1E+03 0.022 26.7 12.1 80 205-285 152-233 (312)
393 PF00613 PI3Ka: Phosphoinositi 22.5 8.3E+02 0.018 24.9 10.7 57 52-112 81-139 (184)
394 cd00870 PI3Ka_III Phosphoinosi 22.2 1.1E+02 0.0025 30.5 4.1 43 854-896 81-125 (166)
395 cd03562 CID CID (CTD-Interacti 22.1 4.9E+02 0.011 23.9 8.3 53 619-676 19-71 (114)
396 cd00864 PI3Ka Phosphoinositide 22.1 1.3E+02 0.0027 29.7 4.3 43 854-896 74-118 (152)
397 KOG0905 Phosphoinositide 3-kin 22.1 4.1E+02 0.0089 34.7 9.4 124 1014-1174 902-1037(1639)
398 KOG2307 Low density lipoprotei 22.0 5.3E+02 0.012 30.7 9.6 57 419-479 489-545 (705)
399 PF06371 Drf_GBD: Diaphanous G 21.7 2.2E+02 0.0047 29.0 6.4 57 382-454 128-186 (187)
400 cd03562 CID CID (CTD-Interacti 21.4 6.4E+02 0.014 23.1 9.9 91 183-284 18-109 (114)
401 cd00872 PI3Ka_I Phosphoinositi 21.4 6.2E+02 0.013 25.5 9.1 57 52-112 75-133 (171)
402 KOG0291 WD40-repeat-containing 20.9 1.1E+03 0.024 29.4 12.2 58 194-255 765-822 (893)
403 PF10441 Urb2: Urb2/Npa2 famil 20.6 5.9E+02 0.013 26.9 9.5 55 447-501 9-70 (223)
404 PF11707 Npa1: Ribosome 60S bi 20.3 1.3E+03 0.027 26.1 19.5 260 884-1160 2-328 (330)
405 KOG2999 Regulator of Rac1, req 20.2 1.6E+03 0.034 27.1 13.8 172 25-204 62-247 (713)
406 KOG2753 Uncharacterized conser 20.1 1.2E+03 0.027 26.0 18.3 173 42-241 43-218 (378)
No 1
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.4e-208 Score=1734.61 Aligned_cols=1205 Identities=52% Similarity=0.814 Sum_probs=1132.2
Q ss_pred CchHHHH-HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh
Q 000941 1 MANLQMA-AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1215)
Q Consensus 1 ~~~~~l~-~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~ 79 (1215)
||++... .+++||+++|||+||||+|||+++|+++++++|++++++++++++++|+|.|+||||.|+||+|+++.|+++
T Consensus 1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke 80 (1233)
T KOG1824|consen 1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE 80 (1233)
T ss_pred CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH
Confidence 8886555 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc---hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l 156 (1215)
.+++.+++.||..+.+++++.|++++++|++++.++++ +.+...+++.++|++.+++..+++...++.+++|+++++
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 356788999999999999987665667999999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000941 157 LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGA 236 (1215)
Q Consensus 157 ~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~ 236 (1215)
+.+||..+.++|..++..+++.+.+++..|||+|+.|||.++.+++...|..++.+++.+|.++.. +...+++||++++
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ-MSATRTYIQCLAA 239 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987653 4677899999999
Q ss_pred HHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCC
Q 000941 237 LSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEE 316 (1215)
Q Consensus 237 l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~ 316 (1215)
+++++|++|+.|++.++|.+.++++..+++|||+||+|+++|+.|+.+||+++.||++++++.++.+++|||||++|++|
T Consensus 240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~e 319 (1233)
T KOG1824|consen 240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEE 319 (1233)
T ss_pred HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCcc
Confidence 99999999999999999999999976667899999999999999999999999999999999999999999999977665
Q ss_pred CcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 000941 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE 396 (1215)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~ 396 (1215)
|++.+..+|.+||+.+++|+||||+||||||+|+||+.+++.+++|++..+|+.+.|.++.||+||||+|+.+++.++..
T Consensus 320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 54444344445555579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCcCCC---CCCCh---hhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhH
Q 000941 397 LVRQTGNVTKGQIDN---NELNP---RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIP 470 (1215)
Q Consensus 397 l~~~~~~~~~~~~~~---~~~~~---~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~ 470 (1215)
++++++...+|..+. ..+|+ ...+.++.|.|+++|.+++++++.++|++||..|.+++.+.|+.+.+|++.++|
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvp 479 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVP 479 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccch
Confidence 999999877777642 12333 257889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCC
Q 000941 471 GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLG 550 (1215)
Q Consensus 471 ~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~ 550 (1215)
.|...++|+++.+..+++++.|+...+.+|+|+.|+||++.+.|.+..+++|++|++..||+.++++++++++|....++
T Consensus 480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999876567
Q ss_pred CCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcC
Q 000941 551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS 630 (1215)
Q Consensus 551 ~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s 630 (1215)
.++.||+.+++...++++.++|.|++||++||.|+|+++.++|+.++..++.+++++++|++||.||.+|++|+..|+.|
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMS 639 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHH
Q 000941 631 PLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT 710 (1215)
Q Consensus 631 ~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~ 710 (1215)
++..++.+.+.++++++.+++++++|.+|.+++.++..++.+++..++...++.++.++.++++++|.|+.+.++.++..
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999998889988899999999999999999999999999999
Q ss_pred HhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCCh--HHHHHHHhccCCCCCCCcchhhh
Q 000941 711 LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF--DTLLDSLLSSAKPSPQSGGVAKQ 788 (1215)
Q Consensus 711 l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~--~~l~~~ll~~~~~~~~~~~~~~~ 788 (1215)
+.. .+|.....+...+++.++.+++||++||.++.+.+.||.+++....+.+ ..++..+..++.. ..++++++|
T Consensus 720 l~~---~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~-~~~~~l~kq 795 (1233)
T KOG1824|consen 720 LAI---IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE-QVTDGLHKQ 795 (1233)
T ss_pred HHh---cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc-ccccchhHH
Confidence 998 4788777789999999999999999999999999999999998875554 3445555455433 245568999
Q ss_pred hhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCCc--hhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCchhHh
Q 000941 789 AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSS--TNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIK 866 (1215)
Q Consensus 789 ~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e~vR 866 (1215)
+++++|+|+|+++.+.+. +...+...++..+.++.+ ..+.||+.++||+|++.+.+..+++.+++++.|++++|+||
T Consensus 796 a~~siA~cvA~Lt~~~~~-~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvk 874 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQ-KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVK 874 (1233)
T ss_pred HHHHHHHHHHHHHHhccc-cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHH
Confidence 999999999999887763 445677777777775543 35899999999999999999888999999999999999999
Q ss_pred hHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhH
Q 000941 867 SAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNV 946 (1215)
Q Consensus 867 ~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~ 946 (1215)
+||++|||++++||++.|||+|++++.+++++||+++||+||+|...+. ..+.|+++.||..||+++++.+|++|++
T Consensus 875 sAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d~~~~~v~~IW~lL~k~cE~~eegtR~v 951 (1233)
T KOG1824|consen 875 SAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---DGLKPYVEKIWALLFKHCECAEEGTRNV 951 (1233)
T ss_pred HHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHhcccchhhhHHH
Confidence 9999999999999999999999999999999999999999999987754 3678999999999999999999999999
Q ss_pred HHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHH
Q 000941 947 VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLAL 1026 (1215)
Q Consensus 947 aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L 1026 (1215)
+|||||+|++++|+.++|.|+..+.++.+..|.++++++||.+++.+..+|++++++++.|+..++|+|.+|||+|+.++
T Consensus 952 vAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 952 VAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchHHHH
Q 000941 1027 STFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYL 1106 (1215)
Q Consensus 1027 ~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~ 1106 (1215)
++++||||++|++.|+++||.||.+|++|+|+||+|+||||||+||||+++||+||||||||++.|.+++|+.+|+ .++
T Consensus 1032 nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl-~~~ 1110 (1233)
T KOG1824|consen 1032 NSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL-NHV 1110 (1233)
T ss_pred HHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 599
Q ss_pred hcccCCcchhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhcccCC
Q 000941 1107 KSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGG 1186 (1215)
Q Consensus 1107 ~~gl~D~~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~~rs~l~~~~~l~~~~~~ 1186 (1215)
..||+|||||||++|+||.||+..+|+.|++++|+++++|+++++.|+|+|+||||.||++|++|||+|++.+|.++|++
T Consensus 1111 ~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v 1190 (1233)
T KOG1824|consen 1111 EDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEV 1190 (1233)
T ss_pred HhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhcCcchHHHHHHHhcC
Q 000941 1187 DCSMKFKSLMSEISKSPMLWEKFYTIRNE 1215 (1215)
Q Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1215)
+++|+|.+|..+++++|+++.+|+.|+||
T Consensus 1191 ~~np~~~df~sqik~~pel~~~fe~I~ke 1219 (1233)
T KOG1824|consen 1191 EKNPQFSDFESQIKSNPELAAIFESIQKE 1219 (1233)
T ss_pred ccChHHHHHHHHhhcChhHHHHHHHHHHH
Confidence 99999999999999999999999999997
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-47 Score=448.75 Aligned_cols=907 Identities=16% Similarity=0.203 Sum_probs=632.6
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIK 92 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~ 92 (1215)
.+.||++|.||+--+++.+.+-|-.++.+...++...+|.++. .+.+.||+.-++.++.+++..-+..|+++++.|++.
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~ 126 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQS 126 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3455566666666666666665555666666666666665444 445566666666666666544434566666666555
Q ss_pred hcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 000941 93 LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLL 172 (1215)
Q Consensus 93 ~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll 172 (1215)
+.+++ +..|+.|+.+|..+.+.+|..+.+|++.++
T Consensus 127 ~~S~~---------------------------------------------~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 127 TKSPN---------------------------------------------PSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred hcCCC---------------------------------------------cchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 54443 455666666777777778888889999999
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhhcC--HH---HHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHhhhhhhh
Q 000941 173 SALLPQLSANQASVRKKSVSCIASLASSLS--DD---LLAKATIEVVRNLRSK--GAKPEMIRTNIQMVGALSRAVGYRF 245 (1215)
Q Consensus 173 ~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~---~~~~l~~~ll~~l~~~--~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1215)
..+.+.+++++..||-.|+++++.++.+.+ .. .|..++|.++..+... ..++.....++.++..++...|.-+
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999999999887799999999999999995 22 4788899888877642 1223445788999999999999999
Q ss_pred ccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh---hcccHHHHHHHHHHHhccCCCCCCCCCCCccccc
Q 000941 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD---ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEA 322 (1215)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~---~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~ 322 (1215)
.||+..|+.+.++..+++ +-++.+|-.|++.+.+++++.|.. -.+|..++++.++..+. +.++|
T Consensus 242 ~~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt-------e~~~D----- 308 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT-------EEEDD----- 308 (1075)
T ss_pred HHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC-------Ccccc-----
Confidence 999999999999998865 567889999999999999987753 34688899999998875 11000
Q ss_pred ccccchhhhcCCCC-CCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Q 000941 323 YEEEEEDESANEYT-DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQT 401 (1215)
Q Consensus 323 ~~~~~d~~~~~~~~-dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~ 401 (1215)
++|..+|+.+ ||.+.. -+.|..+++. +..+.
T Consensus 309 ----~ew~~~d~~ded~~~~~---~~~A~~~lDr-----------------------------------------lA~~L 340 (1075)
T KOG2171|consen 309 ----DEWSNEDDLDEDDEETP---YRAAEQALDR-----------------------------------------LALHL 340 (1075)
T ss_pred ----hhhccccccccccccCc---HHHHHHHHHH-----------------------------------------HHhcC
Confidence 1111111111 111111 1233333333 33333
Q ss_pred cccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC
Q 000941 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS 481 (1215)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~ 481 (1215)
+ | ...+|.+++.+...+.+.+|+.|.+++.+++.+++..+..+..+++++++.+...++|++
T Consensus 341 ~-------------g----~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph- 402 (1075)
T KOG2171|consen 341 G-------------G----KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH- 402 (1075)
T ss_pred C-------------h----hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC-
Confidence 2 1 234678888888889999999999999999999998888899999999999999999987
Q ss_pred cchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHH
Q 000941 482 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1215)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1215)
+++|..|+.+++++.....|+.-+.|-+.+.|.++..+.+. ..+|..+|..++-++.+.+. +..+.||++.+
T Consensus 403 -prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~------~~~l~pYLd~l 475 (1075)
T KOG2171|consen 403 -PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD------KSILEPYLDGL 475 (1075)
T ss_pred -HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc------HHHHHHHHHHH
Confidence 89999999999999887766544456777777888888664 55899999888888876543 44689999999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHH
Q 000941 561 YNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVL 640 (1215)
Q Consensus 561 ~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l 640 (1215)
+...+..|..+ ..+.||+.+.+++|.++...+..+.||+++++|.|...|.|..
T Consensus 476 m~~~l~~L~~~-~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~------------------------- 529 (1075)
T KOG2171|consen 476 MEKKLLLLLQS-SKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD------------------------- 529 (1075)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC-------------------------
Confidence 99777777643 4689999999999999988877777777777777766554421
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CCcchHHHHHHHhhhh---cCCCChhhHHHHHHHHHHHhhccc
Q 000941 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK-IGASAYEVIIVELSTL---ISDSDLHMTALALELCCTLMADKR 716 (1215)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~---l~~~d~~~~~~al~~l~~l~~~~~ 716 (1215)
.++.|.+|..+++|++.++.++|.. |. +..+++++.+..+ ..+.|...+.+...+|+.+++.
T Consensus 530 -----------~~d~r~LrgktmEcisli~~AVGke~F~-~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i-- 595 (1075)
T KOG2171|consen 530 -----------DKDLRELRGKTMECLSLIARAVGKEKFL-PLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI-- 595 (1075)
T ss_pred -----------chhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH--
Confidence 1456889999999999999999853 44 2345566665555 4556677888999999999985
Q ss_pred CCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhHHHH
Q 000941 717 SSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQC 796 (1215)
Q Consensus 717 ~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~ 796 (1215)
....+.++.+.++|.+++..+... ...+ +.. .. ..-.+...... +
T Consensus 596 -lg~~F~p~L~~Vmppl~~ta~~~p--~~~~------~d~---~d-----~e~~~~~~~~e------------~------ 640 (1075)
T KOG2171|consen 596 -LGDDFAPFLPVVMPPLLKTARLDP--DVAL------SDE---ED-----EEEEQDLDGWE------------V------ 640 (1075)
T ss_pred -hchhhHhHHHHHhHHHHHhhccCC--cccC------cCc---hh-----hhhccccccch------------h------
Confidence 333456677777777776554322 0000 000 00 00000000000 0
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCcc---chHHHHHHhc-CCCchhHhhHHHHH
Q 000941 797 VAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHE---HIENVIIESF-QSPFEEIKSAASYA 872 (1215)
Q Consensus 797 i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~---~l~~~ll~~l-~~~~e~vR~aAa~a 872 (1215)
...+..+.- .+.++.-.++.-|+..|+++......++.| ++....+..+ -...++||.||+.+
T Consensus 641 -----~~~~~~e~~--------~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~ 707 (1075)
T KOG2171|consen 641 -----VELGDKENI--------GIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAES 707 (1075)
T ss_pred -----hccCCceee--------eeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 000000000 001111124678888899988888776644 4555334433 46689999999999
Q ss_pred HHhhhh-------cCcc-------cchHHHHHHhhcccch--hHHHHHHHHHHHhhcccc--chhhhhHHHHHHHHHHHh
Q 000941 873 LGNIAV-------GNLS-------KFLPFILDQIDNQQKK--QYLLLHSLKEVIVRQSVD--KAEFQDSSVEKILNLLFN 934 (1215)
Q Consensus 873 LG~l~~-------~~~~-------~~lp~il~~l~~~~~~--~~~~l~alke~i~~~~~~--~~~~~~~~~~~i~~~L~~ 934 (1215)
++.+.. +.+. .+.|..+..+..++.. ...+++++.++|+.++.. .+..+......+...+..
T Consensus 708 ~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~ 787 (1075)
T KOG2171|consen 708 MPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQ 787 (1075)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHH
Confidence 998773 2222 3456666666777644 677899999999887621 122333223333222222
Q ss_pred hcc------------CC-----------ccchhhHHHHHhhhccccCCC-------cchHHHHHhhcCCCcchhHHHhhh
Q 000941 935 HCE------------SE-----------EEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAAFTRATVVIA 984 (1215)
Q Consensus 935 ~~~------------~~-----------~e~~r~~aae~Lg~l~~~~~~-------~~lp~l~~~l~~~~~~~R~~~i~~ 984 (1215)
+.. ++ |...-+.+.+.++.++..... .+.|.+.+++.++.+..|..+++.
T Consensus 788 ~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~ 867 (1075)
T KOG2171|consen 788 HFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCI 867 (1075)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 211 00 111234555666666665544 466666777787788889999999
Q ss_pred hHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeec
Q 000941 985 IKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDL 1064 (1215)
Q Consensus 985 lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~m 1064 (1215)
+..++..++.+.-++...+++.++..++|++++||++|.+++|.++...++..++.....+|.|.........
T Consensus 868 ~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~a------- 940 (1075)
T KOG2171|consen 868 FDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLA------- 940 (1075)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhh-------
Confidence 9999999998888888899999999999999999999999999999999999888888888888765542111
Q ss_pred cCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHhcccC--CcchhHhhHHHHHHHHHhhChhhHHH----h
Q 000941 1065 GPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLE--DHYDVKMPCHLILSKLADKCPSAVLA----V 1138 (1215)
Q Consensus 1065 gpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~--D~~di~~~~~~~l~~l~~~~p~~~~~----~ 1138 (1215)
+.....-.+.||.+|+.+++..+..++++++++ |+|+..|. -+.++-...|.+|..|.+.++..|++ +
T Consensus 941 -----r~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl-~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ 1014 (1075)
T KOG2171|consen 941 -----RTEENRRATENAIGAIAKILLFNPNRIPVDQVL-PAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQN 1014 (1075)
T ss_pred -----hhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH-HHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCccc
Confidence 122334467899999999999998899999999 89988865 36667778899999999999999996 7
Q ss_pred HHHhhHHHHhhhcc
Q 000941 1139 LDSLVDPLQKTINF 1152 (1215)
Q Consensus 1139 l~~l~~~l~~~l~~ 1152 (1215)
++.++-.+...+..
T Consensus 1015 ip~i~~v~~~~~~~ 1028 (1075)
T KOG2171|consen 1015 IPKILSVCAESLAD 1028 (1075)
T ss_pred chHHHHHHHhhhhc
Confidence 77777777777643
No 3
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.9e-45 Score=416.40 Aligned_cols=983 Identities=17% Similarity=0.224 Sum_probs=684.5
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHh-cc--CcccchhHHHHHHHH-HHhh----cc
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-LD--DVAGDVSGLAVKCLA-PLVK----KV 77 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~-L~--D~~~~Vq~~A~~~l~-~l~~----~~ 77 (1215)
+.-+|..+.|..+++...|.--|--.. -+..++....+++.|... +. ++.+++-..+.+..- .+.+ .+
T Consensus 49 v~~lLklL~D~ngEVQnlAVKClg~lv----sKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 49 VKMLLKLLEDKNGEVQNLAVKCLGPLV----SKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHH----hhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 334455556666666665554442222 235667888899998866 44 345677777765543 2322 23
Q ss_pred ChhhHHHHHHHHHHHhcCCCcc--hhhHHHHHHHHHHhccCc--hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHH
Q 000941 78 SEPRVVEMTDKLCIKLLNGKDQ--HRDIASIALKTIIAEVTT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1215)
Q Consensus 78 ~~~~~~~lv~~L~~~~~~~~~~--~r~~a~~aL~~~i~~~~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L 153 (1215)
.+..+..+.++|.+.+....+. .+-.....+.-+...++. +.+-..+.+.++|++ +. +...||..++.+|
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql----~s--~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQL----QS--PRLAVRKKAITAL 198 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcc----cC--hHHHHHHHHHHHH
Confidence 3455566677776665432111 222222223333333332 122233334444443 33 2467999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcC-CCChHHHH
Q 000941 154 CDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSK-GAKPEMIR 228 (1215)
Q Consensus 154 ~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~-~~~~~~~~ 228 (1215)
+.+....+..+ +..+.+.++..|..+. +..-+..++||+.++...+.. ....+++.+.+...+. ..+++.|+
T Consensus 199 ~~la~~~~~~l---y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNRDL---YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCHHH---HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 99988877754 4667777777776653 355567899999999887765 3677788777776432 22358999
Q ss_pred HHHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc--------C----------CCcH-------------HHHHHHHHH
Q 000941 229 TNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--------S----------ENDE-------------ELREYSLQA 277 (1215)
Q Consensus 229 ~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~--------~----------~~d~-------------elre~al~~ 277 (1215)
..+|+++++.+.+|..+.||.+.++..+++++..+ + +||+ -+|.+|..+
T Consensus 276 ~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKc 355 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKC 355 (1233)
T ss_pred HHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999998643 0 1111 199999999
Q ss_pred HHHHHHhChhhhcccHHHHHHHHHHHhc-------------------cCCCCCCCCCCCcccccccccchhhhcCCCCCC
Q 000941 278 LESFLLRCPRDISSYCDEILHLTLEYLS-------------------YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1215)
Q Consensus 278 l~~l~~~~~~~~~~~l~~ii~~~l~~l~-------------------~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd 338 (1215)
++.++...++.+..+...+-|.+..-++ .-+++.+.-. |.|.+ ++ + .-
T Consensus 356 l~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~-d~d~~-------e~--~---g~ 422 (1233)
T KOG1824|consen 356 LEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLA-DNDAM-------EQ--G---GT 422 (1233)
T ss_pred HHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccccc-Cchhh-------hc--c---CC
Confidence 9999888775444444444444433322 2222211000 00000 00 0 00
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhh
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1215)
...-|-+++ -...++..+-+.++++.-..|..++..+.+++.... +
T Consensus 423 ~s~~~~L~~-------------------~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp---------------~ 468 (1233)
T KOG1824|consen 423 PSDLSMLSD-------------------QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP---------------G 468 (1233)
T ss_pred ccchHHHHh-------------------hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc---------------c
Confidence 000122222 222233333344555555577888888888887642 2
Q ss_pred HHHHHHHHHHHHHHHHhcccCh--hhHHHHHHHHHHHH-HhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHH
Q 000941 419 LLKQEVSKIVKSINRQLREKSI--KTKVGAFSVLRELV-VVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRL 495 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~--~~r~~~~~~l~~L~-~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~ 495 (1215)
.+.+++|.+++.|...++|++. ..+..++.++.... .+.|..|.+|++.+.|.+..+..|+. +.+..||+.....
T Consensus 469 ~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f--yKisaEAL~v~~~ 546 (1233)
T KOG1824|consen 469 ALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF--YKISAEALLVCQQ 546 (1233)
T ss_pred hhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch--HhhhHHHHHHHHH
Confidence 5788999999999999999864 46777777766554 44566899999999999999999876 6788899988888
Q ss_pred HhccCC---C---CcchhhhhhhHHHHHHHhc--CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHH
Q 000941 496 VLSSHS---P---PVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1215)
Q Consensus 496 l~~~~~---~---~~~~~~l~~l~p~l~~~l~--d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 567 (1215)
+++.-. + ....||+.+++...++.+. |.+++|+..|+.|+++++..++. .....++..++.++++
T Consensus 547 lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-------~l~~eL~~~L~il~eR 619 (1233)
T KOG1824|consen 547 LVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-------FLGNELPRTLPILLER 619 (1233)
T ss_pred HHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHHH
Confidence 775432 2 3456799999999999985 77889999999999999988853 4667788899999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCch-hHHHHHH
Q 000941 568 LTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDL-TCVLEHV 643 (1215)
Q Consensus 568 l~~~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~-~~~l~~~ 643 (1215)
+++.-+ |-.|+.++..++..--+ .+.+.+..+++.+...++. ...|..++.++..++..- ...+ ...+..+
T Consensus 620 l~nEiT----Rl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~-~~~~~~~~~e~v 694 (1233)
T KOG1824|consen 620 LGNEIT----RLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY-SDSIPAELLEAV 694 (1233)
T ss_pred HhchhH----HHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHH
Confidence 986433 77888888877654323 4567888999999887743 456778888888877321 1223 3456778
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhh--HHHHHHHHHHHhhcccCCCch
Q 000941 644 IAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHM--TALALELCCTLMADKRSSPNV 721 (1215)
Q Consensus 644 l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~--~~~al~~l~~l~~~~~~~p~~ 721 (1215)
+.++.+++..++......++.++..++...+..+. .....+++++..+++++-.|. ....+.++..++.+ ..|+.
T Consensus 695 L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t--~~~~l 771 (1233)
T KOG1824|consen 695 LVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT--KEPDL 771 (1233)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc--CCCCc
Confidence 89999999999999999999999999988776432 234667777777777766554 34566666777765 22321
Q ss_pred hhhhhhhhHHHHHHHhhhcc-------cchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcch---------
Q 000941 722 GLAVRNKVLPQALALIKSSL-------LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGV--------- 785 (1215)
Q Consensus 722 ~~~~~~~~l~~l~~ll~s~~-------l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~--------- 785 (1215)
+ +..++..+..|. ++.++++++..|+++++...+..-..+...+......++..+.+
T Consensus 772 -----~--y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 772 -----D--YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred -----c--HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 1 334455555443 35577788999999998776533332222222111111111111
Q ss_pred -------------------------hhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCC---chhhHHHHHHHhh
Q 000941 786 -------------------------AKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDS---STNSHLALLCLGE 837 (1215)
Q Consensus 786 -------------------------~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~lal~~lge 837 (1215)
+++....++.++|.+++ +.++.|++++-... ..++++.|++|.|
T Consensus 845 Elgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--------gnl~~yLpfil~qi~sqpk~QyLLLhSlke 916 (1233)
T KOG1824|consen 845 ELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--------GNLPKYLPFILEQIESQPKRQYLLLHSLKE 916 (1233)
T ss_pred hhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--------CchHhHHHHHHHHHhcchHhHHHHHHHHHH
Confidence 12222223334444433 35666777665432 2358999999999
Q ss_pred hhccCCCC----CccchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHHHhhcc-cchhHHHHHHHHHHHhh
Q 000941 838 IGRRKDLS----SHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIVR 912 (1215)
Q Consensus 838 i~~~~~~~----~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~-~~~~~~~l~alke~i~~ 912 (1215)
+..+...+ ..+++|+.+++.+++..|+.|+..|+|||+++..+++..+|.+-..+.++ +..|.+.+.|+|+.|..
T Consensus 917 vi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd 996 (1233)
T KOG1824|consen 917 VIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISD 996 (1233)
T ss_pred HHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecC
Confidence 87765443 34689999999999999999999999999999999999999999999887 46799999999999876
Q ss_pred ccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCC-------cchHHHHHhhcCCCcchhHHHhhhh
Q 000941 913 QSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAAFTRATVVIAI 985 (1215)
Q Consensus 913 ~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~-------~~lp~l~~~l~~~~~~~R~~~i~~l 985 (1215)
. +..+.+++.+.+..+++...++|.+||+++.-++.+.+++.|. .++|.++..++.++..+|.+-||+|
T Consensus 997 ~----p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPF 1072 (1233)
T KOG1824|consen 997 Q----PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPF 1072 (1233)
T ss_pred C----CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCc
Confidence 5 4567888888889999999999999999999999999999986 6889999999999999999999999
Q ss_pred HhhhcCCCc-------hhhhhhhHhH-----HHHHH----hccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHH
Q 000941 986 KYSIVERPE-------KIDEIIFPEI-----SSFLM----LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLY 1049 (1215)
Q Consensus 986 k~~i~~~~~-------~~~~~l~~~i-----~~~l~----~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~ 1049 (1215)
||+++++.+ ...++|++|+ ..|+. +|.|. .++|...+.++..++.-+|+.+.+.++.++..|.
T Consensus 1073 KH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1073 KHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 999999865 2345666664 35665 45554 8999999999999999999999999999999999
Q ss_pred HHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000941 1050 DQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1050 ~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~ 1091 (1215)
+....|+ .-+..|+..|...|+.|+|.+++++++..
T Consensus 1152 ~t~~~k~------k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1152 KTCTLKV------KANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred HHhhccc------ccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 8876543 35678889999999999999999999655
No 4
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=100.00 E-value=2.1e-47 Score=366.11 Aligned_cols=167 Identities=53% Similarity=0.877 Sum_probs=151.2
Q ss_pred ccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCCcc
Q 000941 1035 NLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHY 1114 (1215)
Q Consensus 1035 ~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D~~ 1114 (1215)
++++|+++.++|.||++|.++++|||+|+||||||++|||+|+||+||||||++|++|.+++|+.+|+ +++..||+|++
T Consensus 1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~-~~v~~GL~D~~ 79 (169)
T PF08623_consen 1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFL-DRVEAGLKDEH 79 (169)
T ss_dssp GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHH-HHHHHTTSS-H
T ss_pred CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHhhcCCcH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 69999999999
Q ss_pred hhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHh-hcccCCCCCh-hH
Q 000941 1115 DVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASL-NQISGGDCSM-KF 1192 (1215)
Q Consensus 1115 di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~~rs~l~~~~~l-~~~~~~~~~~-~~ 1192 (1215)
|||++||+||.||+..+|..+.++||+++++|+++|++|+|++|||||+||++|++||++|++.+| +.+|++++++ +|
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~ 159 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKW 159 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6889999999 99
Q ss_pred HHHHHHHhcC
Q 000941 1193 KSLMSEISKS 1202 (1215)
Q Consensus 1193 ~~~~~~~~~~ 1202 (1215)
.+||+|+++|
T Consensus 160 ~~f~~~i~~~ 169 (169)
T PF08623_consen 160 NEFVEWIKKN 169 (169)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-37 Score=335.95 Aligned_cols=668 Identities=15% Similarity=0.201 Sum_probs=473.2
Q ss_pred hhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcch
Q 000941 21 RYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQH 100 (1215)
Q Consensus 21 R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~ 100 (1215)
|..|.--|+|.+...+.....+....+...+++.+.|+++-+|+.....|+.++.+..-..|+++++.|++.+.+++.-.
T Consensus 65 Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~ 144 (885)
T KOG2023|consen 65 RSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNT 144 (885)
T ss_pred HHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccc
Confidence 33333333333333334455678888999999999999999999999999999988888899999999999998777666
Q ss_pred hhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhc
Q 000941 101 RDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS 180 (1215)
Q Consensus 101 r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~ 180 (1215)
.+.|.-||.++|+..+. .++ . +.......-+++.+++..+
T Consensus 145 ~EgA~~AL~KIcEDsa~--------------~ld---s-----------------------~~~~rpl~~mipkfl~f~~ 184 (885)
T KOG2023|consen 145 CEGAFGALQKICEDSAQ--------------FLD---S-----------------------DVLTRPLNIMIPKFLQFFK 184 (885)
T ss_pred cchhHHHHHHHHhhhHH--------------HHh---h-----------------------hcccCchHHhHHHHHHHHh
Confidence 78999999999987542 111 0 0011234566778888899
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHH
Q 000941 181 ANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLI 257 (1215)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll 257 (1215)
++++.+|+.|+.|+..+...-++.+ +++.++.+...-.+. ++++|+..+.++..+.+..|+++.||++.||.+++
T Consensus 185 h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML 262 (885)
T KOG2023|consen 185 HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYML 262 (885)
T ss_pred CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHH
Confidence 9999999999999999998888875 456666666554333 35899999999999999999999999999999999
Q ss_pred HhhcccCCCcHHHHHHHHHHHHHHHHh-----ChhhhcccHHHHHHHHHHHhccCCCC----C-CCCCC---C-ccc---
Q 000941 258 DYCTSASENDEELREYSLQALESFLLR-----CPRDISSYCDEILHLTLEYLSYDPNF----T-DNMEE---D-SDD--- 320 (1215)
Q Consensus 258 ~~~~~~~~~d~elre~al~~l~~l~~~-----~~~~~~~~l~~ii~~~l~~l~~dpn~----~-~~~d~---d-~~~--- 320 (1215)
+..+ |.|+++ |++|+|.|... |+..+.||+++++|.++.-|.|...- . .++|+ | ++|
T Consensus 263 ~~tq---d~dE~V---ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP 336 (885)
T KOG2023|consen 263 QRTQ---DVDENV---ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP 336 (885)
T ss_pred HHcc---CcchhH---HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc
Confidence 9887 566665 67777777553 56678999999999999999985421 1 11111 1 001
Q ss_pred ----------ccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHH
Q 000941 321 ----------EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDV 390 (1215)
Q Consensus 321 ----------~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~ 390 (1215)
.++.+++||++|++++||.++.|.+|+++|.+|+.+.+-+++ +++..++|.|-+.+...+|.||.+.
T Consensus 337 Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEag 413 (885)
T KOG2023|consen 337 RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAG 413 (885)
T ss_pred hhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhh
Confidence 011111222222222444556799999999999999988884 4566788888888777889999999
Q ss_pred HHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc-hhhhhhhhhhh
Q 000941 391 FNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP-DCLADHIGSLI 469 (1215)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~-~~l~~~~~~lv 469 (1215)
+-+++++.+ |+.+.+.+++|.+++.+..+|.|+.+-+|...+.+|+......- ..-..|+..++
T Consensus 414 vLAlGAIAE---------------GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL 478 (885)
T KOG2023|consen 414 VLALGAIAE---------------GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVL 478 (885)
T ss_pred HHHHHHHHH---------------HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHH
Confidence 999999876 35567788999999999999999999999988888888765431 11235888888
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc---CCchHHHHHHHHHHHHHHHhccCCC
Q 000941 470 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG---ERYYKVTAEALRVCGELVRVLRPSV 546 (1215)
Q Consensus 470 ~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~---d~~~~v~~~al~~l~~l~~~~~~~~ 546 (1215)
..+.+.+-|++ ..+..+|+..+..+-+..+ +.+-||+..|+..+..+++ .++-.+...|++++.+-+...
T Consensus 479 ~~ll~~llD~N--K~VQEAAcsAfAtleE~A~-~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~---- 551 (885)
T KOG2023|consen 479 EGLLRRLLDSN--KKVQEAACSAFATLEEEAG-EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA---- 551 (885)
T ss_pred HHHHHHHhccc--HHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh----
Confidence 88888888766 6788889999998887765 4667899999999998875 344457777777776665321
Q ss_pred cCCCCCChhcHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHhccCcccchh----hhhHHHHHHhhc------cch
Q 000941 547 EGLGFDFKPYVQPIYNAIMSRLT-NQDQDQEVKECAISCMGLVISTFGDNLGAEL----PACLPVLVDRMG------NEI 615 (1215)
Q Consensus 547 ~~~~~~~~~~l~~l~~~l~~~l~-~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~----~~~l~~L~~~L~------~e~ 615 (1215)
-.-..|++-++|-+++... -+|.|.++- --++|++.++..+|..+.|+. .+++.++...+. ++.
T Consensus 552 ----Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~ 626 (885)
T KOG2023|consen 552 ----LNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDP 626 (885)
T ss_pred ----cCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 1234688888888877653 234444443 348899999999998887754 455555543321 111
Q ss_pred h-----H---HHHHHHHHHHHcCCCCCchhHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Q 000941 616 T-----R---LTAVKAFAVIAASPLHIDLTCVL--EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVI 685 (1215)
Q Consensus 616 ~-----r---~~a~~al~~i~~s~~~~~~~~~l--~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~ 685 (1215)
+ | ..++.-+.-++.. ++..+++.+ ..++..+...+.+.-..+|++++..|+.+..++...+. +....+
T Consensus 627 ~~~~pdkdfiI~sLDL~SGLaeg-Lg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-p~~~~f 704 (885)
T KOG2023|consen 627 TVEAPDKDFIIVSLDLLSGLAEG-LGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-PNLADF 704 (885)
T ss_pred cccCCCcceEEEeHHHHhHHHHH-hhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-chHHHH
Confidence 1 1 2334444444422 222334443 23667777777888889999999999999999876555 346667
Q ss_pred HHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCCh
Q 000941 686 IVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF 765 (1215)
Q Consensus 686 l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~ 765 (1215)
+..+...++.....+...|..++|.++.. ..+ ..+++...++..++..++.+......++.+.--++.++...+..+
T Consensus 705 l~~lg~Nl~~~~isv~nNA~WAiGeia~k--~g~-~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~v 781 (885)
T KOG2023|consen 705 LPILGANLNPENISVCNNAIWAIGEIALK--MGL-KMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEV 781 (885)
T ss_pred HHHHhhcCChhhchHHHHHHHHHHHHHHH--hch-hhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhc
Confidence 77776666666777888999999999874 222 345677888888888888776444444544444555554433333
Q ss_pred HHHHHH
Q 000941 766 DTLLDS 771 (1215)
Q Consensus 766 ~~l~~~ 771 (1215)
.+.++.
T Consensus 782 Ap~l~~ 787 (885)
T KOG2023|consen 782 APHLDS 787 (885)
T ss_pred chhHHH
Confidence 333333
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=307.91 Aligned_cols=677 Identities=15% Similarity=0.214 Sum_probs=510.4
Q ss_pred cchhhhhHHHHHHHhcc-----------ccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh-ccChhhHHHH
Q 000941 18 KDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVVEM 85 (1215)
Q Consensus 18 ~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~-~~~~~~~~~l 85 (1215)
.+.|..|.--|+|.|.. .|++++.+..++|...+++.|..|.+.+.+.|.+|++.++. .+|..+|+.+
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~l 130 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPEL 130 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHH
Confidence 45677788888888753 25778889999999999999999999999999999999986 6899999999
Q ss_pred HHHHHHHhcCCCcc-hhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 000941 86 TDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1215)
Q Consensus 86 v~~L~~~~~~~~~~-~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l 164 (1215)
+..|...+.++.+. +++.+..||+.+|+++.+ +......+.++..++++++..+++..||..|+.+|.+-++..+..+
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~p-evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDP-EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCH-HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999876554 889999999999999987 4555667889999999999988889999999999999888888777
Q ss_pred hh--hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000941 165 SN--DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1215)
Q Consensus 165 ~~--~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~ 238 (1215)
.. +...+++++.+.-++++..||.+|+.||..+....-+.+ .+.+....++.+++++ +++...+++.|+++|
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~--deValQaiEFWstic 287 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDN--DEVALQAIEFWSTIC 287 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHH
Confidence 53 567899999999999999999999999999987654432 2335555667777555 378889999999888
Q ss_pred hh-------hhhhhccc------------hhhhHHHHHHhhcccCCC----cHHHHHHHHHHHHHHHHhChhhhcccHHH
Q 000941 239 RA-------VGYRFGPH------------LGDTVPVLIDYCTSASEN----DEELREYSLQALESFLLRCPRDISSYCDE 295 (1215)
Q Consensus 239 ~~-------~~~~~~~~------------l~~iip~ll~~~~~~~~~----d~elre~al~~l~~l~~~~~~~~~~~l~~ 295 (1215)
.- .+..+..+ ++.++|.+++.+..++++ |-....+|-.+|.-++..|+.++-
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv----- 362 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV----- 362 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-----
Confidence 63 12233333 348999999998764322 223667777888888988885554
Q ss_pred HHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHH
Q 000941 296 ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPK 374 (1215)
Q Consensus 296 ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~~~l~~~~~~i~p~ 374 (1215)
+.++.|++. |. ...+|+-|.+|+.++++++... ++.+.++....+|.
T Consensus 363 --~~Vl~Fiee--~i----------------------------~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 363 --PHVLPFIEE--NI----------------------------QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred --hhhHHHHHH--hc----------------------------CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 444555431 00 0123999999999999999874 67888899999999
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhH-HHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHH
Q 000941 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL-LKQEVSKIVKSINRQLREKSIKTKVGAFSVLREL 453 (1215)
Q Consensus 375 Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L 453 (1215)
++..+.|+.--||..+.++++.+++... ... -..+.+.++.++...|+|. +++...+++++..|
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~--------------e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~L 475 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLP--------------EAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISL 475 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhch--------------hhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHH
Confidence 9999999999999999999999998652 111 1456778888888888764 56888889999999
Q ss_pred HHhCchh---------hhhhhhhhhHHHHHhhcCCC-CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcC-
Q 000941 454 VVVLPDC---------LADHIGSLIPGIEKSLNDKS-STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGE- 522 (1215)
Q Consensus 454 ~~~~~~~---------l~~~~~~lv~~l~~~l~d~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d- 522 (1215)
++..+.. ..++++.|+..+++.-.... +.+++|..+...|..+++.. +....|.+..+.+.+...++.
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s-t~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS-TDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 8764321 33577778877776654322 35689999999999999875 456666677777777664431
Q ss_pred ----------C--chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 000941 523 ----------R--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 590 (1215)
Q Consensus 523 ----------~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~ 590 (1215)
+ ...+.+--..+++.+.+.+++ ++.++.+.+|..++..+... ...-|.+.|+.++|.++.
T Consensus 555 i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-------~~~~~~d~iM~lflri~~s~-~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 555 ISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-------DIREVSDQIMGLFLRIFESK-RSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-------cchhHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHH
Confidence 1 112333444556666655533 68899999999999998763 346688999999999999
Q ss_pred hccCcccchhhhhHHHHHHhhccch---hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Q 000941 591 TFGDNLGAELPACLPVLVDRMGNEI---TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGT 665 (1215)
Q Consensus 591 ~~~~~l~~~~~~~l~~L~~~L~~e~---~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~ 665 (1215)
++|..|..|.+.+.|.|...|+|.. +..+|+..+|.++.+ ++.++.||...++..|...|+++ +|.+|...+.+
T Consensus 627 ~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 627 SLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 9999999999999999999997764 445677788888865 56789999999999999999876 69999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHhhhhc---CCC-C-------hhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHH
Q 000941 666 MNSLVVAYGDKIGASAYEVIIVELSTLI---SDS-D-------LHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQAL 734 (1215)
Q Consensus 666 L~~l~~~~~~~~~~~~~~~~l~~l~~~l---~~~-d-------~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~ 734 (1215)
++.|+.+.+.+|. +|++.++.-+...- .++ | -.+|..++++...+++.. .-........+++|.++
T Consensus 706 FgDIAlaIg~~F~-~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qgl--k~~~~~~~~~p~v~~I~ 782 (859)
T KOG1241|consen 706 FGDIALAIGADFE-PYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGL--KTHADVMLVQPYVPHII 782 (859)
T ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHh--hcccchhhhhcchHHHH
Confidence 9999999998776 46666665553321 222 1 146778888777776652 21112234456667776
Q ss_pred HHhh----hcccchhhhHHHHHHHHHHHhhcC
Q 000941 735 ALIK----SSLLQGQALVALQSFFAALVYSAN 762 (1215)
Q Consensus 735 ~ll~----s~~l~~~~l~~l~~~~~~l~~~~~ 762 (1215)
+++. .+..++....+...+++.++...+
T Consensus 783 sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 783 SFIDRIAAEPDVSEALHAAALGLIGDLATMFG 814 (859)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHHHHHHcc
Confidence 6654 333445555667777777776654
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-29 Score=294.10 Aligned_cols=845 Identities=15% Similarity=0.162 Sum_probs=544.7
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChh---hHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchh
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSS 119 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~---~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~ 119 (1215)
.-..+++.|+.++++||+..|..|...|..+...+++. ++..+..-+.+.+.+++..+|-.|..|+.+++...+...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 56789999999999999999999999999998877763 344666666667777766689999999999988775322
Q ss_pred hHHHHHHhHhHHHHhhhhcc--CCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCCh--HHHHHHHHHHHH
Q 000941 120 LAQSIHTSLTPQLTKGITLK--DMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ--ASVRKKSVSCIA 195 (1215)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~--~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~--~~vrk~a~~~l~ 195 (1215)
.....+..++|.++..++.. ..+......++++|.++++..++.+.++...+++..+....+.+ ..+|..|+..+.
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33445677889888776542 12455678999999999999999999999999999999988765 489999999999
Q ss_pred HHHhhcCHH------HHHHHHHHHHHHhhcC----CCC----------hHHHHHHHHHHHHHHhhhhhhhccchhhhHHH
Q 000941 196 SLASSLSDD------LLAKATIEVVRNLRSK----GAK----------PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPV 255 (1215)
Q Consensus 196 ~l~~~~~~~------~~~~l~~~ll~~l~~~----~~~----------~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ 255 (1215)
.++.+.+.. +...+++.++....+- .|. +.....+.+++-.++...|.+ .-++.++|.
T Consensus 275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~ 352 (1075)
T KOG2171|consen 275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEA 352 (1075)
T ss_pred HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHH
Confidence 999885433 3556677666655321 110 123456788888888877633 135667777
Q ss_pred HHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCC
Q 000941 256 LIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEY 335 (1215)
Q Consensus 256 ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~ 335 (1215)
+-.+++ ..+..-|.+++.+++.+++.|++.|.+.+++|++.++.+++ |
T Consensus 353 l~~~l~---S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~-D---------------------------- 400 (1075)
T KOG2171|consen 353 LEAMLQ---STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN-D---------------------------- 400 (1075)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC-C----------------------------
Confidence 777777 46788999999999999999999999999999999999885 2
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHH-HHHhhhcccc-hhHHHHHHHHHHHHHHHhcccCCCcCCCCC
Q 000941 336 TDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACP-KLIDRFKERE-ENVKMDVFNTFIELVRQTGNVTKGQIDNNE 413 (1215)
Q Consensus 336 ~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p-~Li~~~~d~e-~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~ 413 (1215)
...+||-+|+.+++.+...++..+...++..+| .|+..+.+.+ ..|...+..++..+....
T Consensus 401 -----phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~------------ 463 (1075)
T KOG2171|consen 401 -----PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC------------ 463 (1075)
T ss_pred -----CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC------------
Confidence 235999999999999999987666666665555 5655554432 344444444444443321
Q ss_pred CChhhHHHHHHHHHHHHHHHHh-cccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC--cchhHHHHH
Q 000941 414 LNPRWLLKQEVSKIVKSINRQL-REKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS--TSNLKIEAL 490 (1215)
Q Consensus 414 ~~~~~~L~~~~p~i~~~l~~~L-~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~--~~~~~~~al 490 (1215)
+.+.+..++|.+++.....| ...++.+|..+..++++.+...+..|.+|++.++|.+...|.+... ...+|..++
T Consensus 464 --~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 464 --DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred --cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHH
Confidence 33478899999999555555 4456679999999999999999999999999999999999986552 234677777
Q ss_pred HHHHHHhccCCCCcchhhhhhhHHHHHHH---hcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHH
Q 000941 491 TFTRLVLSSHSPPVFHPYIKALSSPVLAA---VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1215)
Q Consensus 491 ~~l~~l~~~~~~~~~~~~l~~l~p~l~~~---l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 567 (1215)
.+++.+....+.+.|.|+...++..+... ..+.+...++..+...+.+|+.+++ +|.||++.++|.++..
T Consensus 542 Ecisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~-------~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 542 ECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD-------DFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch-------hhHhHHHHHhHHHHHh
Confidence 77777766667788999988888888776 3344556778888889999999854 7999999999999876
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhccC-cccchhhh-hHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 000941 568 LTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPA-CLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIA 645 (1215)
Q Consensus 568 l~~~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~-~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~ 645 (1215)
.+. +.+..+-.. .+... ..-.++ .....-.. .+.+-...+ .-+..|+.+|+.++.- ++..|.||+.++++
T Consensus 615 a~~-~p~~~~~d~--~d~e~-~~~~~~~e~~~~~~~e~~~I~Tsvl---~eK~~A~~~Lv~~a~~-lk~~F~pYve~v~~ 686 (1075)
T KOG2171|consen 615 ARL-DPDVALSDE--EDEEE-EQDLDGWEVVELGDKENIGIRTSVL---DEKETACEALGEYAKE-LKEAFAPYVEQVVE 686 (1075)
T ss_pred hcc-CCcccCcCc--hhhhh-ccccccchhhccCCceeeeeeehhH---HHHHHHHHHHHHHHHh-hhhhhhhHHHHHHH
Confidence 542 222111100 00000 000000 00000000 011100000 1256788888888743 36778999999998
Q ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHHHHhCCC--CCcchHHH----HHHHhhhhc-CCCChhhHHHHHHHHHHHhhcccC
Q 000941 646 ELTAFL-RKANRALRQATLGTMNSLVVAYGDK--IGASAYEV----IIVELSTLI-SDSDLHMTALALELCCTLMADKRS 717 (1215)
Q Consensus 646 ~L~~~L-~~~~~~lr~~al~~L~~l~~~~~~~--~~~~~~~~----~l~~l~~~l-~~~d~~~~~~al~~l~~l~~~~~~ 717 (1215)
.....+ ---+..+|.++++++..++.+...+ -.+.++.. +.+.+...+ .+.+..+....++.++...+.+
T Consensus 687 l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~-- 764 (1075)
T KOG2171|consen 687 LMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVM-- 764 (1075)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhc--
Confidence 333333 3567889999999999988765431 11223333 334433333 4567778888888888777742
Q ss_pred CCch-hhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCC----ChHHHHHHHhccCCCCCCCcchhhhhhhh
Q 000941 718 SPNV-GLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANT----SFDTLLDSLLSSAKPSPQSGGVAKQAMYS 792 (1215)
Q Consensus 718 ~p~~-~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~----~~~~l~~~ll~~~~~~~~~~~~~~~~~~~ 792 (1215)
.+.. ........+..+... +...+......... ....--+..+. +. + +..+..
T Consensus 765 G~~~L~~~~~~~~~~~~~~~-------------~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~---d---~~ll~~ 822 (1075)
T KOG2171|consen 765 GDNCLNEDGLEALLGGLLAQ-------------LLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQ---D---AYLLDA 822 (1075)
T ss_pred CcccCCcHHHHHHHHHHHHH-------------HHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hh---h---HHHHHH
Confidence 1111 011111111111111 11222221111100 01111111111 00 0 122333
Q ss_pred HHHHHHHHHhhcCCc---chhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCC---ccchHHHHHHhcCCCchhHh
Q 000941 793 IAQCVAVLCLAAGDQ---KCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEEIK 866 (1215)
Q Consensus 793 ~a~~i~~~~~~~~~~---~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~---~~~l~~~ll~~l~~~~e~vR 866 (1215)
+...++.+....+.. .+.+..+.+...+.++....|.+++.++++++.+++... +....+.++..+.+.+++||
T Consensus 823 i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVR 902 (1075)
T KOG2171|consen 823 ISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVR 902 (1075)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHH
Confidence 444455444432221 133444444455554444458999999999988886643 35688889999999999999
Q ss_pred hHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhcc----CCcc-
Q 000941 867 SAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCE----SEEE- 941 (1215)
Q Consensus 867 ~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~----~~~e- 941 (1215)
++|++.+|-++.-..+.|=|.+.+.+ +.|.+.++ ..++
T Consensus 903 qaAsYGiGvlaq~~g~~y~~v~~~~l-------------------------------------~~L~~~iq~~~ar~Ee~ 945 (1075)
T KOG2171|consen 903 QAAAYGMGVLAQFGGEDYAPVCSEAL-------------------------------------PLLVQVLQPPLARTEEN 945 (1075)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHH-------------------------------------HHHHHHHcChhhhhHHH
Confidence 99999999888543334444333321 11111111 0111
Q ss_pred -chhhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhcc-CCChHHH
Q 000941 942 -GVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIK-DQDRHVR 1019 (1215)
Q Consensus 942 -~~r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~-D~d~~Vr 1019 (1215)
-...++..|+++++..++... + ....++.++.+|. .+|.+.-
T Consensus 946 ~~ateNa~gaiaki~~~~~~~i-----------------------------------~-vdqvl~~~l~~LPl~~D~eEa 989 (1075)
T KOG2171|consen 946 RRATENAIGAIAKILLFNPNRI-----------------------------------P-VDQVLPAWLSWLPLKEDKEEA 989 (1075)
T ss_pred hHHHHHHHHHHHHHHHhCCccC-----------------------------------c-HHHHHHHHHHhCCCccchhhh
Confidence 123567777777766554321 1 3344555666655 3344444
Q ss_pred HHHHHHHHHHHhcCcccccchhhhhhHHHHHHh
Q 000941 1020 RAAVLALSTFAHNKPNLIKGLLPELLPLLYDQT 1052 (1215)
Q Consensus 1020 ~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~ 1052 (1215)
.-....|..+..+.+..+....++.+|.+..-+
T Consensus 990 ~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen 990 VPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred hhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence 455666777776666666776677777776543
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-25 Score=245.77 Aligned_cols=603 Identities=14% Similarity=0.165 Sum_probs=428.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCCh----HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADA----DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE- 79 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~----~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~- 79 (1215)
.+..+.+-+.++|-..--.|...|.+..++..--+|. .-++-+++.+++..+.+++.+|..|+.|+.+++..-+.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 4566777778888777777888888877764322222 44567889999999999999999999999998864343
Q ss_pred --hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 80 --PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 80 --~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
..+.+++..|+....+.++++|.-.+.||-.+.+-.+. ++ .+.++.++--+++..++. +.+|..+||+....++
T Consensus 209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl-~phl~~IveyML~~tqd~--dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KL-VPHLDNIVEYMLQRTQDV--DENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hc-ccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHh
Confidence 24567788888888888899999999999888765443 22 234566666666666665 5779999999998888
Q ss_pred HH--hhhhhhhhHHHHHHHHhhhh----------c-CC------------------------------------------
Q 000941 158 HK--FGNLMSNDHERLLSALLPQL----------S-AN------------------------------------------ 182 (1215)
Q Consensus 158 ~~--~g~~l~~~~~~ll~~ll~~l----------~-~~------------------------------------------ 182 (1215)
+. ....+.+|.+.++++++..+ . ++
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 76 34567789999999887543 1 00
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHh
Q 000941 183 ---QASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDY 259 (1215)
Q Consensus 183 ---~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~ 259 (1215)
++.+||.+..+|+.++...+++++..++|.+-+.|.+..| .+|+.++-++|+||+.|-..|.|||+.++|++++.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W--~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEW--KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchh--hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence 1679999999999999999999999999999999999888 68999999999999999999999999999999999
Q ss_pred hcccCCCcHHHHHHHHHHHHHHHHhChhh-hcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCC
Q 000941 260 CTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1215)
Q Consensus 260 ~~~~~~~d~elre~al~~l~~l~~~~~~~-~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd 338 (1215)
+. |.-+-+|....+++.++....-.+ -..|+..++.-+++.+- |
T Consensus 443 L~---DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-D------------------------------- 487 (885)
T KOG2023|consen 443 LD---DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-D------------------------------- 487 (885)
T ss_pred hc---cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-c-------------------------------
Confidence 97 456778888877777765543222 22455555555555442 1
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhh---cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF---KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~---~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1215)
..-+|.+||+.++.++.+...+.+-++++.++..|+..| +.++--+-.+++.+++.-+.+.-+ .
T Consensus 488 --~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln-----------~ 554 (885)
T KOG2023|consen 488 --SNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALN-----------K 554 (885)
T ss_pred --ccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcC-----------c
Confidence 234899999999999999988888889999999998877 344444555555554444332110 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhc-----------CCC---C
Q 000941 416 PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN-----------DKS---S 481 (1215)
Q Consensus 416 ~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~-----------d~~---~ 481 (1215)
| ..++-.+|++++.-.. +++.+ +.-.--+..|+.++.+++.+|.|+.+.+.....+.+. ++. .
T Consensus 555 ~-~YiqiLmPPLi~KW~~-lsd~D-KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~p 631 (885)
T KOG2023|consen 555 P-AYIQILMPPLIEKWEL-LSDSD-KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAP 631 (885)
T ss_pred H-HHHHHhccHHHHHHHh-cCccc-chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCC
Confidence 2 2345455666654332 33332 2333445667777777777777765554433333222 111 1
Q ss_pred cchhHHHHHHHHHHHhccCCCCcchhh--hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHH
Q 000941 482 TSNLKIEALTFTRLVLSSHSPPVFHPY--IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1215)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~--l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1215)
+.+..+.++.+++.++++.+. ...+. =..|+..+..|++|..++|++.++..++++++.+- +...|++..
T Consensus 632 dkdfiI~sLDL~SGLaegLg~-~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~-------~~v~p~~~~ 703 (885)
T KOG2023|consen 632 DKDFIIVSLDLLSGLAEGLGS-HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF-------EHVIPNLAD 703 (885)
T ss_pred CcceEEEeHHHHhHHHHHhhh-chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-------HhccchHHH
Confidence 224556789999999887653 34442 23588889999999999999999999999999873 357899999
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccch----hHHHHHHHHHHHHcCCCCCc
Q 000941 560 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI----TRLTAVKAFAVIAASPLHID 635 (1215)
Q Consensus 560 l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~----~r~~a~~al~~i~~s~~~~~ 635 (1215)
+++.+-..+. -..-.+..+|+.++|+++...|....+++..++.-|...++.+. .-.++.-++|.++... +..
T Consensus 704 fl~~lg~Nl~--~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~-Pe~ 780 (885)
T KOG2023|consen 704 FLPILGANLN--PENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC-PEE 780 (885)
T ss_pred HHHHHhhcCC--hhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC-HHh
Confidence 8887764432 11366889999999999999998888888877777766654332 2345555667766321 223
Q ss_pred hhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhCC
Q 000941 636 LTCVLEHVIAELTAFLRK-ANRALRQATLGTMNSLVVAYGD 675 (1215)
Q Consensus 636 ~~~~l~~~l~~L~~~L~~-~~~~lr~~al~~L~~l~~~~~~ 675 (1215)
+.|+++..+..-+.-++. .+..-|.+|+.-+..++.-.+.
T Consensus 781 vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 781 VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 456666666555555542 2445688888888888765554
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-24 Score=239.71 Aligned_cols=596 Identities=16% Similarity=0.269 Sum_probs=412.5
Q ss_pred CchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhccccCCCChHHHHH-HHHHHHHhccCcccchhHHHHHHHHHHhhcc
Q 000941 1 MANLQMAAILEKITG--KDKDFRYMATSDLLNELNKESFKADADLEVK-LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV 77 (1215)
Q Consensus 1 ~~~~~l~~ll~~~~~--~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~-i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~ 77 (1215)
|++-.+..+...|+. ++.++|+.|++.|++.|.--..+++.+.++. |++.+....+.|+.+||..|..||..++..+
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 456788889999854 7889999999999999876544445455555 6688889999999999999999999998644
Q ss_pred ChhhHHHHHHH-HHHHhcCC-CcchhhHHHHHHH---HHHhc-cCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHH
Q 000941 78 SEPRVVEMTDK-LCIKLLNG-KDQHRDIASIALK---TIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1215)
Q Consensus 78 ~~~~~~~lv~~-L~~~~~~~-~~~~r~~a~~aL~---~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~ 151 (1215)
.+ ++.+++.. |+...... +++.-+++..|+. ++|++ +. +.- ..-+...... .|.-.
T Consensus 249 Y~-~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD---~~~--------e~~e~~d~~~-~p~~~----- 310 (859)
T KOG1241|consen 249 YE-FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEID---LAI--------EYGEAVDQGL-PPSSK----- 310 (859)
T ss_pred HH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH---HHH--------HHHHHhhcCC-Cchhh-----
Confidence 33 45555543 66554321 2344567888775 34432 11 000 0000001110 01000
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhc-------CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 000941 152 ILCDVLHKFGNLMSNDHERLLSALLPQLS-------ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~ll~~ll~~l~-------~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~ 224 (1215)
+|.. ...+.+++.+++.|. +++|.+-|.|-.||..++..+++++.+.+++.+-+.+++++|
T Consensus 311 -------~fa~---~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdw-- 378 (859)
T KOG1241|consen 311 -------YFAR---QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDW-- 378 (859)
T ss_pred -------HHHH---HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcch--
Confidence 0111 112233344444332 235789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhc--ccHHHHHHHHH
Q 000941 225 EMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS--SYCDEILHLTL 301 (1215)
Q Consensus 225 ~~~~~~i~~l~~l~~~-~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~--~~l~~ii~~~l 301 (1215)
..|+.++.+||++... .+.++.|+.++.+|.++..+. |..--+|+++.++|..++..+|+... .|+..+++.++
T Consensus 379 r~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 379 RNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS---DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred hhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc---CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 6789999999999985 457899999999999999887 45667899999999999999996544 37788889998
Q ss_pred HHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHHHHHHHHHHhhh-
Q 000941 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDRF- 379 (1215)
Q Consensus 302 ~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~~~i~p~Li~~~- 379 (1215)
..+...|+... ..+|..-.-|-.+-.+.... ..+...++|+.++..|++.-
T Consensus 456 ~gL~DePrva~---------------------------N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~td 508 (859)
T KOG1241|consen 456 EGLNDEPRVAS---------------------------NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTD 508 (859)
T ss_pred HHhhhCchHHH---------------------------HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcc
Confidence 88864443210 11343222221121111111 01223368888888887643
Q ss_pred --cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhccc--Chh-------hHHHHHH
Q 000941 380 --KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK--SIK-------TKVGAFS 448 (1215)
Q Consensus 380 --~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~--~~~-------~r~~~~~ 448 (1215)
.-.+.+.|..++.+|.++++..-. .....++...+.++..+.+.+.+. +.. .+-.-+.
T Consensus 509 r~dgnqsNLR~AAYeALmElIk~st~-----------~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 509 RADGNQSNLRSAAYEALMELIKNSTD-----------DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred ccccchhhHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 113578999999999999986421 011134455555555555554411 111 2222345
Q ss_pred HHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc-CCchHH
Q 000941 449 VLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKV 527 (1215)
Q Consensus 449 ~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~-d~~~~v 527 (1215)
.|+.+....++...+..+.++..+++.++.+. +..+..+++-.++.++...+ ..|..|++.+.|.+..+++ -..+.|
T Consensus 578 ~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~-s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGSDIREVSDQIMGLFLRIFESKR-SAVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 56666666666666788889999999988632 24577889999999988766 5788999999999999994 456789
Q ss_pred HHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHH
Q 000941 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVL 607 (1215)
Q Consensus 528 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L 607 (1215)
...|++.++++++.++ .+|.||.+.++..+++.|++...+.+||-.-+++.|.++...|..|.+|+..+++++
T Consensus 656 c~~aVglVgdl~raL~-------~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALE-------DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLL 728 (859)
T ss_pred HHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999984 579999999999999999998889999999999999999999999999999999999
Q ss_pred HHhhc-------cc------hhHHHHHHHHHHHHcC-CC--CCc-hhHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Q 000941 608 VDRMG-------NE------ITRLTAVKAFAVIAAS-PL--HID-LTCVLEHVIAELTAFLRK--ANRALRQATLGTMNS 668 (1215)
Q Consensus 608 ~~~L~-------~e------~~r~~a~~al~~i~~s-~~--~~~-~~~~l~~~l~~L~~~L~~--~~~~lr~~al~~L~~ 668 (1215)
-..-+ .+ ..|.+++.+-.-|... .. +.. +.||++.++..+...-.. .+..+..++++.|+.
T Consensus 729 q~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgD 808 (859)
T KOG1241|consen 729 QQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGD 808 (859)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 75431 11 2577777776555421 11 111 347777766554443332 236788999999999
Q ss_pred HHHHhCCC
Q 000941 669 LVVAYGDK 676 (1215)
Q Consensus 669 l~~~~~~~ 676 (1215)
++..+|.+
T Consensus 809 L~~~fg~~ 816 (859)
T KOG1241|consen 809 LATMFGKG 816 (859)
T ss_pred HHHHcccc
Confidence 99999865
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=5.3e-22 Score=215.29 Aligned_cols=607 Identities=12% Similarity=0.166 Sum_probs=436.6
Q ss_pred CCcchhhhhHHHHHHHhcc-----------ccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh-ccChhhHH
Q 000941 16 KDKDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVV 83 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~-~~~~~~~~ 83 (1215)
..+..|..|..-|+|.|.. .|..+..+...++....++.|..|.+..-+.|.+.++.++. .++...|+
T Consensus 53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp 132 (858)
T COG5215 53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132 (858)
T ss_pred CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccch
Confidence 3456788888888888754 24557778889999999999999999999999999999987 58889999
Q ss_pred HHHHHHHHHhcCCCcc-hhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 84 EMTDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~-~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
.++..+...+.++.+. ....+..+++..|+.-.+ +......+.++-.+..+-.+.+++..||..++.+|.+-+.....
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998776554 344566677778875554 33334456666677766666566889999999999985555555
Q ss_pred hhh--hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHHH-HHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000941 163 LMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLAK-ATIEVVRNLRSKGAKPEMIRTNIQMVGA 236 (1215)
Q Consensus 163 ~l~--~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~~-l~~~ll~~l~~~~~~~~~~~~~i~~l~~ 236 (1215)
.+. .....+++.+.+.-+.++..++.+|..|+..+....-+- +.++ +.....+.++++++ ++...+++.|++
T Consensus 212 nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd--~va~qavEfWst 289 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND--EVAIQAVEFWST 289 (858)
T ss_pred hhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHH
Confidence 553 356788999999999999999999999999988654332 2222 22222344455553 788889999999
Q ss_pred HHhhhh-----hh-----------hcc-chhhhHHHHHHhhcccC----CCcHHHHHHHHHHHHHHHHhChhhhcccHHH
Q 000941 237 LSRAVG-----YR-----------FGP-HLGDTVPVLIDYCTSAS----ENDEELREYSLQALESFLLRCPRDISSYCDE 295 (1215)
Q Consensus 237 l~~~~~-----~~-----------~~~-~l~~iip~ll~~~~~~~----~~d~elre~al~~l~~l~~~~~~~~~~~l~~ 295 (1215)
|++.-- .+ |.. .+.+++|.+++.+..++ +||-.+..+|-.+|+-|+..|+. .
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-------~ 362 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-------K 362 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-------H
Confidence 987421 11 111 24568999998887643 33445777788888888888884 3
Q ss_pred HHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHH
Q 000941 296 ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPK 374 (1215)
Q Consensus 296 ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~~~l~~~~~~i~p~ 374 (1215)
++..++.|+.. |. ...+|.=|++|+.++++++... .+.+..+.+..+|.
T Consensus 363 i~~pVl~FvEq--ni----------------------------~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~ 412 (858)
T COG5215 363 IMRPVLGFVEQ--NI----------------------------RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPG 412 (858)
T ss_pred hHHHHHHHHHH--hc----------------------------cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHH
Confidence 34444555421 10 0125999999999999999764 35667788899999
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 375 Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
++..+.|+---|+....+|++.+..+.... -.| ..+++..+.+....+.|. ++....|.+.+..|+
T Consensus 413 i~n~m~D~~l~vk~ttAwc~g~iad~va~~---------i~p----~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv 478 (858)
T COG5215 413 IENEMSDSCLWVKSTTAWCFGAIADHVAMI---------ISP----CGHLVLEVSASLIGLMDC-PFRSINCSWRKENLV 478 (858)
T ss_pred HHHhcccceeehhhHHHHHHHHHHHHHHHh---------cCc----cccccHHHHHHHhhhhcc-chHHhhhHHHHHhHH
Confidence 988888888889999999999998765311 011 234566666655556553 445566777777777
Q ss_pred HhCch-------hhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc------
Q 000941 455 VVLPD-------CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG------ 521 (1215)
Q Consensus 455 ~~~~~-------~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~------ 521 (1215)
.+++. .+.++.+.|+..+...-+-..+..+.|...+..|+.++..++ +...+.+..++..+.+.+.
T Consensus 479 ~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~-d~V~~~~a~~~~~~~~kl~~~isv~ 557 (858)
T COG5215 479 DHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP-DAVSDILAGFYDYTSKKLDECISVL 557 (858)
T ss_pred HhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66544 355677777777776544334456789999999999998754 5555555555555554442
Q ss_pred -------CC--chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 000941 522 -------ER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1215)
Q Consensus 522 -------d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~ 592 (1215)
|. ..++.+.-++++..+++..++ +..+.-++++..++..+..++ ...+-.-.++++|.+...+
T Consensus 558 ~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-------~ie~v~D~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 558 GQILATEDQLLVEELQSNYIGVLEAIIRTRRR-------DIEDVEDQLMELFIRILESTK-PTTAFGDVYTAISALSTSL 629 (858)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcccHHHHHHHHHHHHHhccC-CchhhhHHHHHHHHHHHHH
Confidence 11 124555666777777766544 566777789999999988663 2455667788999999999
Q ss_pred cCcccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Q 000941 593 GDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNS 668 (1215)
Q Consensus 593 ~~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~L~~ 668 (1215)
++.+..|.+.+.|.+.+.++.. .+...|+..+|.++.+ ++.+|.+|...++..|.+.|+++ +|.+|.+.+.+++.
T Consensus 630 ~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant-l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 630 EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT-LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 9999999999999999998432 2446678888888866 57899999999999999999865 68999999999999
Q ss_pred HHHHhCCCCCcchHHHHHH
Q 000941 669 LVVAYGDKIGASAYEVIIV 687 (1215)
Q Consensus 669 l~~~~~~~~~~~~~~~~l~ 687 (1215)
|+.+.+..|. ++++.++-
T Consensus 709 IAlaiga~F~-~YL~~im~ 726 (858)
T COG5215 709 IALAIGANFE-SYLDMIMM 726 (858)
T ss_pred HHHHHhhhHH-HHHHHHHH
Confidence 9999988665 35555444
No 11
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=5e-19 Score=197.36 Aligned_cols=743 Identities=16% Similarity=0.201 Sum_probs=463.7
Q ss_pred ccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHH
Q 000941 35 ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTII 112 (1215)
Q Consensus 35 ~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i 112 (1215)
+.+...+..+++|...||+. ...++.-|..|.+.|..-+...+. .++..+++..+.+. .++.|..-.-.+..++
T Consensus 353 ~~L~~~e~kEr~i~~llLkv-KNG~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~tLeDqerhllVkvidriL 428 (1172)
T KOG0213|consen 353 PLLEDEEGKERKIMRLLLKV-KNGTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSPTLEDQERHLLVKVIDRIL 428 (1172)
T ss_pred hhcCcccccHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCccccchhhhhHHHHHHHHH
Confidence 34445556778888877754 456778899999888866654443 34455555444433 2344554444444444
Q ss_pred hccCchhhHHHHHHhHh----HHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHH
Q 000941 113 AEVTTSSLAQSIHTSLT----PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRK 188 (1215)
Q Consensus 113 ~~~~~~~~~~~~~~~l~----p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk 188 (1215)
-.+. .+..++.++|+ |.++. ++...+.+.-++++.+....|-. .++..+-+.+++.+.-||.
T Consensus 429 yklD--dlvrpYVhkILvViepllid------ed~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRn 494 (1172)
T KOG0213|consen 429 YKLD--DLVRPYVHKILVVIEPLLID------EDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRN 494 (1172)
T ss_pred Hhhc--ccchhceeeeEEEeecceec------chHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHH
Confidence 4443 34556666655 44432 25678888889999998888763 3566677788888889999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCc
Q 000941 189 KSVSCIASLASSLSDDLLAKATIEVVRNLRSK-GAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEND 267 (1215)
Q Consensus 189 ~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d 267 (1215)
....+++.++.+++-..+..++. ....+. +| +.|.+.|.+...||.-.|....||+..++.++-+.+. |+.
T Consensus 495 ttarafavvasalgip~llpfLk---avc~SkkSw--qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~---De~ 566 (1172)
T KOG0213|consen 495 TTARAFAVVASALGIPALLPFLK---AVCGSKKSW--QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLK---DEQ 566 (1172)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH---HHhccccch--hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhc---ccc
Confidence 99999999999887664443333 333333 44 7889999999999999999999999999999988887 566
Q ss_pred HHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHH-HH
Q 000941 268 EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK-VR 346 (1215)
Q Consensus 268 ~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swk-vR 346 (1215)
--+|-.+..++..+++.. .||--..+..+++-+ || +|
T Consensus 567 qkVR~itAlalsalaeaa----~Pygie~fDsVlkpL--------------------------------------wkgir 604 (1172)
T KOG0213|consen 567 QKVRTITALALSALAEAA----TPYGIEQFDSVLKPL--------------------------------------WKGIR 604 (1172)
T ss_pred hhhhhHHHHHHHHHHHhc----CCcchHHHHHHHHHH--------------------------------------HHHHH
Confidence 778887777887777643 244333333333322 21 34
Q ss_pred HHHHHHHHHHHhhC----c---hhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCC-------
Q 000941 347 RAAAKCLAALIVSR----P---EMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN------- 411 (1215)
Q Consensus 347 ~~Aa~~L~~li~~~----~---~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~------- 411 (1215)
+---+.|.++++.. | .....+| ..++-.++.-|+.++++.+..++..+...+...|....|....
T Consensus 605 ~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~ 684 (1172)
T KOG0213|consen 605 QHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFF 684 (1172)
T ss_pred HccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHh
Confidence 43333344443332 1 1222333 3456667777888888888888877777766555332222210
Q ss_pred ------CCC--Ch-------hhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh-hh-hhhhhhhHHH
Q 000941 412 ------NEL--NP-------RWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC-LA-DHIGSLIPGI 472 (1215)
Q Consensus 412 ------~~~--~~-------~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~-l~-~~~~~lv~~l 472 (1215)
.+. -. ...+.+.+ ..++..+..-+++.++..|.....+...++..+|.. +. .....++..+
T Consensus 685 ~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgi 764 (1172)
T KOG0213|consen 685 SFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGI 764 (1172)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 000 00 00122222 344555555667777778888888888887766542 33 3566788899
Q ss_pred HHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCC
Q 000941 473 EKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFD 552 (1215)
Q Consensus 473 ~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 552 (1215)
+.++++..+...+. +..++.+....+ ...+||+++|...++..++++.++++..|...++.++..+.... .+.
T Consensus 765 l~Afqeqtt~d~vm---l~gfg~V~~~lg-~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~---ee~ 837 (1172)
T KOG0213|consen 765 LYAFQEQTTEDSVM---LLGFGTVVNALG-GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG---EEK 837 (1172)
T ss_pred HHHHHhcccchhhh---hhhHHHHHHHHh-hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc---HHH
Confidence 99998765434433 344455544433 35689999999999999999999999999999999988765431 111
Q ss_pred ChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhcc--chhHHHHHHHHHHHH-
Q 000941 553 FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIA- 628 (1215)
Q Consensus 553 ~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~- 628 (1215)
.-.|+. ..+.+-|. ..++||--.-+.++..++...|- .+.|-...++|.|...|+| +-+..+++..+|.|+
T Consensus 838 ~m~~lG---vvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 838 LMGHLG---VVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIAD 912 (1172)
T ss_pred HHHHhh---HHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHh
Confidence 222333 33345454 44688888778888777777654 3445455556666655555 346778899999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHH
Q 000941 629 ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELC 708 (1215)
Q Consensus 629 ~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l 708 (1215)
.++..+.-..|..-+. .|...|...+..+|.++..+++-|+...|. +.++..|...+...+.|.+-.+.-++
T Consensus 913 rgpE~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaI 984 (1172)
T KOG0213|consen 913 RGPEYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAI 984 (1172)
T ss_pred cCcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhh
Confidence 4444444567887665 466788888999999999999999988775 55777777888777888776555555
Q ss_pred HHHhhcccCCCchhhhhhhhhHHHHHHHhhhcc--cchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchh
Q 000941 709 CTLMADKRSSPNVGLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVA 786 (1215)
Q Consensus 709 ~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~--l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~ 786 (1215)
+-+.+.| .|- .++|.+++--+.|. +|...|.++..+|+-+++.+......+.+-+-+.+- + .+.+|
T Consensus 985 aIVaE~c--~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm-D--rD~vh 1052 (1172)
T KOG0213|consen 985 AIVAETC--GPF-------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM-D--RDLVH 1052 (1172)
T ss_pred hhhhhhc--Cch-------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc-c--ccHHH
Confidence 5555542 232 67898888777664 688889999999998888765444444444333322 1 22345
Q ss_pred hhhhhhHHHHHHHHHhhcCCc-chhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCchhH
Q 000941 787 KQAMYSIAQCVAVLCLAAGDQ-KCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEI 865 (1215)
Q Consensus 787 ~~~~~~~a~~i~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e~v 865 (1215)
++.-.++.+-++.-+.+.|.. .+.-.++-.++.+-..+.....-...++-.+....+. ....+-+++-|-|+...|
T Consensus 1053 Rqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~---~~~~~Y~~QGLFHParkV 1129 (1172)
T KOG0213|consen 1053 RQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP---QAMLKYCLQGLFHPARKV 1129 (1172)
T ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch---HHHHHHHHHhccCcHHHH
Confidence 665434333332222222221 1223444444444433322111111122211111111 123455566667888888
Q ss_pred hhHHHHHHHhhhhcC
Q 000941 866 KSAASYALGNIAVGN 880 (1215)
Q Consensus 866 R~aAa~aLG~l~~~~ 880 (1215)
|+.-+..+-++..++
T Consensus 1130 R~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1130 RKRYWTVYNSMYHGS 1144 (1172)
T ss_pred HHHHHHHHHhHhhcc
Confidence 888777776666554
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.4e-18 Score=188.90 Aligned_cols=610 Identities=15% Similarity=0.159 Sum_probs=393.6
Q ss_pred chHHHHHHHHHh--cCCCcchhhhhHHHHHHHhcc--ccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhcc
Q 000941 2 ANLQMAAILEKI--TGKDKDFRYMATSDLLNELNK--ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV 77 (1215)
Q Consensus 2 ~~~~l~~ll~~~--~~~d~d~R~mAl~dL~~~l~~--~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~ 77 (1215)
.+-.+..++..- +.+++.+|..|++.|+.-+.. +.|.- +.....+++.+....+.++.++|..|.-|+..++...
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~-E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCY-EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcc-hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 344455555443 457888999999999986543 34432 2344567888889999999999999999999988522
Q ss_pred ---ChhhHHHHHHHHHHHhcCCCcchhhHHHHHHH---HHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHH
Q 000941 78 ---SEPRVVEMTDKLCIKLLNGKDQHRDIASIALK---TIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1215)
Q Consensus 78 ---~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~---~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~ 151 (1215)
-..+++..+-.|...... ++.-+++.+|.. ++|++--. ..+-.+-.|.. . .++ ..-.+..+-|
T Consensus 253 Y~fm~~ymE~aL~alt~~~mk--s~nd~va~qavEfWsticeEeid----~~~e~~~~pe~-p-~qn---~~fa~aav~d 321 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMK--SQNDEVAIQAVEFWSTICEEEID----GEMEDKYLPEV-P-AQN---HGFARAAVAD 321 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHhh----hHHHHhhcccC-c-hhh---cchHHHHHHH
Confidence 123334433333333222 233356777765 56653111 11111112210 0 000 1111111112
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhh---cCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHH
Q 000941 152 ILCDVLHKFGNLMSNDHERLLSALLPQL---SANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIR 228 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~ll~~ll~~l---~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~ 228 (1215)
..|.++..+-.+= ..++|.+.+.|-.||..++...++.+...+...+-+.+++++| ..|+
T Consensus 322 ---------------vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w--~nre 384 (858)
T COG5215 322 ---------------VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESW--ANRE 384 (858)
T ss_pred ---------------HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchh--hhHH
Confidence 2233333333322 2345789999999999999999999999999999999999998 6899
Q ss_pred HHHHHHHHHHhhh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcc--cHHHHHHHHHHHhc
Q 000941 229 TNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS--YCDEILHLTLEYLS 305 (1215)
Q Consensus 229 ~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~--~l~~ii~~~l~~l~ 305 (1215)
.++.+||++...- ...+.+++++.+|.+...+. |.---+++.+.+++..++...+..+.| |++..+..++.-+.
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~---D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS---DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc---cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Confidence 9999999998753 35678889999999988765 344457888999999999888877766 67777776665554
Q ss_pred cCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhh--hcccc
Q 000941 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDR--FKERE 383 (1215)
Q Consensus 306 ~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~--~~d~e 383 (1215)
..|... -..||+.-.-+...-. .....+..+..+|..++..|++. ..+.|
T Consensus 462 D~p~~~---------------------------~ncsw~~~nlv~h~a~-a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne 513 (858)
T COG5215 462 DCPFRS---------------------------INCSWRKENLVDHIAK-AVREVESFLAKFYLAILNALVKGTELALNE 513 (858)
T ss_pred ccchHH---------------------------hhhHHHHHhHHHhhhh-hhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 222110 0124653322221111 11112445667888888888764 34566
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCC---ChhhHHHHHHHHHHHHHHHHhcccC----hhhHHHHHHHHHHHHHh
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNEL---NPRWLLKQEVSKIVKSINRQLREKS----IKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~L~~~~p~i~~~l~~~L~~~~----~~~r~~~~~~l~~L~~~ 456 (1215)
.+.|...+.++++++.....+ ... +-.+.....+.+-+....+.+...+ ...+-.-+.+|..++..
T Consensus 514 ~n~R~s~fsaLgtli~~~~d~-------V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 514 SNLRVSLFSALGTLILICPDA-------VSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred hhHHHHHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999998754210 000 0000111222333333333332221 12344456677788888
Q ss_pred CchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHH
Q 000941 457 LPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCG 536 (1215)
Q Consensus 457 ~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~ 536 (1215)
.++...+.-++++..+.+.|.... +..+.-+.+..++.+..+.+ +.|..|.++++|.+...++..++-+...|++.++
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvg 664 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTK-PTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVG 664 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccC-CchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 888777777788888888887652 34455677777777766543 5788999999999999998888889999999999
Q ss_pred HHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhh--ccc
Q 000941 537 ELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM--GNE 614 (1215)
Q Consensus 537 ~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L--~~e 614 (1215)
.+...+ +.+|.+|...++..+.+.+++...+.++|-.-+++.|.++.+.|..+.+|+..++-++...- +.+
T Consensus 665 dlantl-------~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~ 737 (858)
T COG5215 665 DLANTL-------GTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPH 737 (858)
T ss_pred HHHHHh-------hhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC
Confidence 999988 45799999999999999999888899999999999999999999999999999888876532 211
Q ss_pred -------hhHHHHHHHHHH----HHcCC-CCC-chhHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCC---
Q 000941 615 -------ITRLTAVKAFAV----IAASP-LHI-DLTCVLEHVIAELTAFLRKAN--RALRQATLGTMNSLVVAYGDK--- 676 (1215)
Q Consensus 615 -------~~r~~a~~al~~----i~~s~-~~~-~~~~~l~~~l~~L~~~L~~~~--~~lr~~al~~L~~l~~~~~~~--- 676 (1215)
..|.+++..+.. |..+. -+. .+.||+..+...+...-.+++ ...-.+++..|+.++..++..
T Consensus 738 ~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 738 SDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 234555444332 22121 111 235666666655544333332 345578999999999888754
Q ss_pred --CCcchHHHHHH
Q 000941 677 --IGASAYEVIIV 687 (1215)
Q Consensus 677 --~~~~~~~~~l~ 687 (1215)
++..++...+.
T Consensus 818 ~~~~~dWv~d~l~ 830 (858)
T COG5215 818 FGLDEDWVKDFLY 830 (858)
T ss_pred hccchHHHHHHHH
Confidence 44444444443
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=1.1e-14 Score=187.99 Aligned_cols=627 Identities=16% Similarity=0.139 Sum_probs=400.9
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-cccchhHHHHHHHHHHhhccChhhH-
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPRV- 82 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~~~l~~l~~~~~~~~~- 82 (1215)
.+..+++-+.+.|++.++-|+.-|.+......-..+.=.....++.++++|++ ++..||..|+.+|+.++..-.+...
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35667777888999999999887765554311011111234578999999974 5679999999999999864322110
Q ss_pred ---HHHHHHHHHHhcCCC---------cchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHH
Q 000941 83 ---VEMTDKLCIKLLNGK---------DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1215)
Q Consensus 83 ---~~lv~~L~~~~~~~~---------~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al 150 (1215)
..-++.|+..+..+. ...++.+.-||.++|.+. ..++|.|-+.+.... +..+..+++
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----------~~ll~~L~~ll~s~r-d~~~~ada~ 338 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----------SALILYLGELSESPR-SPAPIADTL 338 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----------hhhHHHHHHhhcccc-hHHHHHHHH
Confidence 022555665554322 234678889999998764 336666665554421 345566677
Q ss_pred HHHHHHHHHhhhhhhhh--H--HHHHHHHhhhhcCChHH-HHHHHHHHHHHHHhhc-CHHHH--HHHHHHHHHHhhcCCC
Q 000941 151 DILCDVLHKFGNLMSND--H--ERLLSALLPQLSANQAS-VRKKSVSCIASLASSL-SDDLL--AKATIEVVRNLRSKGA 222 (1215)
Q Consensus 151 ~~L~~l~~~~g~~l~~~--~--~~ll~~ll~~l~~~~~~-vrk~a~~~l~~l~~~~-~~~~~--~~l~~~ll~~l~~~~~ 222 (1215)
.++..++..+...-... . ..+...+...+.++++. +++++..+|..+.... -...+ .+..+.++..+...+.
T Consensus 339 gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ 418 (2102)
T PLN03200 339 GALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA 418 (2102)
T ss_pred hhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCH
Confidence 77777766554322111 1 13446777888877664 5888888886543221 11111 2345566777766543
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHH
Q 000941 223 KPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHL 299 (1215)
Q Consensus 223 ~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~ 299 (1215)
+.+..++.++..++...... ...+ ...+|.+++.+.. .+.++++.+..++..++....+.-...+ ...+|.
T Consensus 419 --evQ~~Av~aL~~L~~~~~e~-~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 419 --DVQEELIRALSSLCCGKGGL-WEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred --HHHHHHHHHHHHHhCCCHHH-HHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 78888999999998754322 1222 2358888888883 5788999999999988875543221111 234666
Q ss_pred HHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH--HHHHHHHHh
Q 000941 300 TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY--EEACPKLID 377 (1215)
Q Consensus 300 ~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~--~~i~p~Li~ 377 (1215)
+.++++. + +.++|+.|+-++..+... ++...... ..++|.|++
T Consensus 493 LV~LL~s-~---------------------------------~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 493 LVQLLET-G---------------------------------SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHcC-C---------------------------------CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHH
Confidence 6666641 1 127899999999988764 33333333 257888888
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC
Q 000941 378 RFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1215)
Q Consensus 378 ~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~ 457 (1215)
.++..+..++..+..++..++.... .+.++++ ...+...+.+.+..++.+++.+....
T Consensus 538 LL~sgd~~~q~~Aa~AL~nLi~~~d------------------~~~I~~L----v~LLlsdd~~~~~~aL~vLgnIlsl~ 595 (2102)
T PLN03200 538 LLKNGGPKGQEIAAKTLTKLVRTAD------------------AATISQL----TALLLGDLPESKVHVLDVLGHVLSVA 595 (2102)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhccc------------------hhHHHHH----HHHhcCCChhHHHHHHHHHHHHHhhc
Confidence 8888788899999999888876421 1223343 34466677778888888888876643
Q ss_pred chh--hhh--hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh-hhhhhHHHHHHHhcCCchHHHHHHH
Q 000941 458 PDC--LAD--HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEAL 532 (1215)
Q Consensus 458 ~~~--l~~--~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~l~p~l~~~l~d~~~~v~~~al 532 (1215)
.+. ... .-..-+|.+...+++.+ ...+.+|..++..++.++.. .... .....+|+++..+.....+++.++.
T Consensus 596 ~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d-~~~avv~agaIpPLV~LLss~~~~v~keAA 672 (2102)
T PLN03200 596 SLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQD-LCESLATDEIINPCIKLLTNNTEAVATQSA 672 (2102)
T ss_pred chhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChH-HHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence 321 111 01245677777777654 67889999999999876542 2222 4567889999999988889999999
Q ss_pred HHHHHHHHhccCCCcCCCCCChhcHH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccc-hhhhhHHHHHHh
Q 000941 533 RVCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDR 610 (1215)
Q Consensus 533 ~~l~~l~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~-~~~~~l~~L~~~ 610 (1215)
.++..+....... ....++. ..++.+++.++ +.+.++++.|+.+++.++...... .. .-...++.|++.
T Consensus 673 ~AL~nL~~~~~~~------q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~l 743 (2102)
T PLN03200 673 RALAALSRSIKEN------RKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRV 743 (2102)
T ss_pred HHHHHHHhCCCHH------HHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHH
Confidence 9999988643211 1112232 25666777776 446789999999999998765221 11 123457777777
Q ss_pred hcc--chhHHHHHHHHHHHHcCCCCCc-hhHHH--HHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHh-CCCCCcchH
Q 000941 611 MGN--EITRLTAVKAFAVIAASPLHID-LTCVL--EHVIAELTAFLRKANRALRQA--TLGTMNSLVVAY-GDKIGASAY 682 (1215)
Q Consensus 611 L~~--e~~r~~a~~al~~i~~s~~~~~-~~~~l--~~~l~~L~~~L~~~~~~lr~~--al~~L~~l~~~~-~~~~~~~~~ 682 (1215)
++. +..|..|+++|..++.+....+ +..++ ...+..|..+|+..|-..... ++..|..+++.. +..+.++-+
T Consensus 744 Lr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 823 (2102)
T PLN03200 744 LREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPW 823 (2102)
T ss_pred HHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCch
Confidence 754 4469999999999995432222 33333 346777888998877665555 889999888743 233322211
Q ss_pred HH------HHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCc
Q 000941 683 EV------IIVELSTLISDSDLHMTALALELCCTLMADKRSSPN 720 (1215)
Q Consensus 683 ~~------~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~ 720 (1215)
-. -+.-+...+....+.+..-+++++.++|++ +|.
T Consensus 824 ~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~---~~~ 864 (2102)
T PLN03200 824 AVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD---QPV 864 (2102)
T ss_pred hhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc---Chh
Confidence 11 122232334667788889999999999996 554
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.84 E-value=6.6e-14 Score=180.82 Aligned_cols=779 Identities=14% Similarity=0.116 Sum_probs=463.4
Q ss_pred HHHHHHHHHhcCC--CcchhhhhHHHHHHHhccccCCCChHHH---HHHHHHHHHhccCcccchhHHHHHHHHHHhhccC
Q 000941 4 LQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLE---VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1215)
Q Consensus 4 ~~l~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~---~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~ 78 (1215)
..+..+++++++. +++.|..|+-.|......+..+ .... ...++.|+..|..++..+|..|+.++..+..+
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en--R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA--RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH--HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--
Confidence 4678899999865 7888998988887776543211 1111 33788899999999999999999999988754
Q ss_pred hhhH-----HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHH--HHHhHhHHHHhhhhccCC-ChhHHHHHH
Q 000941 79 EPRV-----VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS--IHTSLTPQLTKGITLKDM-NTEIRCECL 150 (1215)
Q Consensus 79 ~~~~-----~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~--~~~~l~p~L~~~l~~~~~-~~~v~~~al 150 (1215)
++.- ..-++-|+..+.+++.+.|+.++.+|..+...-..+..... +..-.+|.|+..+++.+. +..++..++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 2111 23355666667777888899999999988754211011111 124567888888876421 223556667
Q ss_pred HHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChH
Q 000941 151 DILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPE 225 (1215)
Q Consensus 151 ~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~ 225 (1215)
-+|..+..+.+..-.. .....++.+...++++++.++..|+.++..++...++. .. ...++.+++.+++.+. ..
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-~~ 247 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-VS 247 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-hH
Confidence 7888887665543211 12236777888888888999999999998888765543 12 3468888888876432 36
Q ss_pred HHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccC------CCcHHHHHHHHHHHHHHHHhChhhhcccHHHHH
Q 000941 226 MIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSAS------ENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~------~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1215)
.|+.+..+++.|+...+ .+...+ ...+|.+++.+.... +....+++.+.+++.+++...+ .++
T Consensus 248 VRE~AA~AL~nLAs~s~-e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~--------~ll 318 (2102)
T PLN03200 248 VRAEAAGALEALSSQSK-EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS--------ALI 318 (2102)
T ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch--------hhH
Confidence 88999999999998543 222222 234777777665211 1234579999999999987653 233
Q ss_pred HHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC--c-hhhHHHH--HHHH
Q 000941 298 HLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR--P-EMLSKLY--EEAC 372 (1215)
Q Consensus 298 ~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~--~-~~l~~~~--~~i~ 372 (1215)
+.+-+.+. .+. | -.+--.++-++..++... + +... .+ ..+.
T Consensus 319 ~~L~~ll~-s~r------------------------------d--~~~~ada~gALayll~l~d~~~~~~~-~i~~~~v~ 364 (2102)
T PLN03200 319 LYLGELSE-SPR------------------------------S--PAPIADTLGALAYALMVFDSSAESTR-AFDPTVIE 364 (2102)
T ss_pred HHHHHhhc-ccc------------------------------h--HHHHHHHHhhHHHHHHhcCCchhhhh-hccccccH
Confidence 33322221 000 0 000001111222221111 1 1111 11 1234
Q ss_pred HHHHhhhcccchh-HHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHH
Q 000941 373 PKLIDRFKEREEN-VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSV 449 (1215)
Q Consensus 373 p~Li~~~~d~e~~-Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~ 449 (1215)
+.|++.++.+++. |...+..++..++... .+...+ ...++.+...+......++..+...
T Consensus 365 ~~LV~Llr~k~p~~vqe~V~eALasl~gN~-----------------~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 365 QILVKLLKPRDTKLVQERIIEALASLYGNA-----------------YLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCCh-----------------HHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 5666666666544 3444555554443211 111111 2445566677776677788888888
Q ss_pred HHHHHHhCchhhhhh-hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh-hhhhhHHHHHHHhcCCchHH
Q 000941 450 LRELVVVLPDCLADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKV 527 (1215)
Q Consensus 450 l~~L~~~~~~~l~~~-~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~l~p~l~~~l~d~~~~v 527 (1215)
|..++.........- -...+|.+...|.+.+ ...+..++..++.+..+.... -.. .-...+|.++..+..+..++
T Consensus 428 L~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa~~nden-r~aIieaGaIP~LV~LL~s~~~~i 504 (2102)
T PLN03200 428 LSSLCCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILTDEVDES-KWAITAAGGIPPLVQLLETGSQKA 504 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHcCCCHHH
Confidence 888885432221111 1124677777787643 567888888898887643211 111 12457888888998888899
Q ss_pred HHHHHHHHHHHHHhccCCCcCCCCCChhcHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHH
Q 000941 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLP 605 (1215)
Q Consensus 528 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~--~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~ 605 (1215)
+.+|..++++++.. .......+. ..++.+++.|.+ .+.++++.|..++..++..... .. ++
T Consensus 505 qeeAawAL~NLa~~--------~~qir~iV~~aGAIppLV~LL~s--gd~~~q~~Aa~AL~nLi~~~d~---~~----I~ 567 (2102)
T PLN03200 505 KEDSATVLWNLCCH--------SEDIRACVESAGAVPALLWLLKN--GGPKGQEIAAKTLTKLVRTADA---AT----IS 567 (2102)
T ss_pred HHHHHHHHHHHhCC--------cHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhccch---hH----HH
Confidence 99999999998752 112333332 356667777764 4688999999999998765322 12 23
Q ss_pred HHHHhhcc--chhHHHHHHHHHHHHcCCCCCch-hHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcc
Q 000941 606 VLVDRMGN--EITRLTAVKAFAVIAASPLHIDL-TCV--LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGAS 680 (1215)
Q Consensus 606 ~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~-~~~--l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~ 680 (1215)
.+++.+.. ...+..++++++.+.......++ ... -...++.|..++++.+...|..|..+|..+..........-
T Consensus 568 ~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~av 647 (2102)
T PLN03200 568 QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESL 647 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 34444433 34566788999888642212111 111 13578899999999999999999999999986443211111
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch-hhhhhhhhHHHHHHHhhhcc--cchhhhHHHHHHHHHH
Q 000941 681 AYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAAL 757 (1215)
Q Consensus 681 ~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ll~s~~--l~~~~l~~l~~~~~~l 757 (1215)
.....++-+..+++..+..++..+..+|+.+... ..++. ...+....+|.++++++++. +...++.++..++..-
T Consensus 648 v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~--~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 648 ATDEIINPCIKLLTNNTEAVATQSARALAALSRS--IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC--CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 1223455566677777877888888888888763 12221 22245668999999998763 3344445555554211
Q ss_pred ---Hhhc-CCChHHHHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcCCcc-------hhhHHHHHHHHhcCCCch
Q 000941 758 ---VYSA-NTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQK-------CSSTVKMLTDILKDDSST 826 (1215)
Q Consensus 758 ---~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-------~~~~l~~~~~~l~~~~~~ 826 (1215)
.+.. ...++.+++- +... .+. .++ +.+.++..++...+... ..+++..+...|......
T Consensus 726 e~~~ei~~~~~I~~Lv~l-Lr~G----~~~-~k~----~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 726 EVAAEALAEDIILPLTRV-LREG----TLE-GKR----NAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred hHHHHHHhcCcHHHHHHH-HHhC----ChH-HHH----HHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 1001 1123333332 2211 111 122 35666666665433111 235666666777654322
Q ss_pred h--hHHHHHHHhhhhccCC-CC----------CccchHHHHHHhcCCCchhHhhHHHHHHHhhhhc
Q 000941 827 N--SHLALLCLGEIGRRKD-LS----------SHEHIENVIIESFQSPFEEIKSAASYALGNIAVG 879 (1215)
Q Consensus 827 ~--~~lal~~lgei~~~~~-~~----------~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~ 879 (1215)
. -.-++..|+-+.+... .. ..|.-.+.++.++.+.++.+-..|..-|.+++..
T Consensus 796 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 796 SSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 1 2347777777766421 11 1244566677888888899999999988888843
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.84 E-value=1.1e-15 Score=171.12 Aligned_cols=524 Identities=15% Similarity=0.199 Sum_probs=348.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhh
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS---DDLLAKATIEVVRNLR 218 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~~~~~~l~~~ll~~l~ 218 (1215)
++..|+.++.+...++.-.|-...+|...+++++-..+.+++..||--+..+++.++.... -+.|+.++..+.++++
T Consensus 525 SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir 604 (1172)
T KOG0213|consen 525 SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIR 604 (1172)
T ss_pred chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999988888888887654 4569999999999988
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhhhhhccc-hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHH
Q 000941 219 SKGAKPEMIRTNIQMVGALSRAVGYRFGPH-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1215)
Q Consensus 219 ~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~-l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1215)
.... ..-...+.++|.++--.......| -..+|-.++.-.+ ..|+|++...+..++..+...+-+-.-.-.+++
T Consensus 605 ~hrg--k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~---sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil 679 (1172)
T KOG0213|consen 605 QHRG--KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG---SPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL 679 (1172)
T ss_pred HccC--hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC---CChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence 6554 233344666666665444444554 4567777777666 478999999998888877654422111123444
Q ss_pred HHHHHH-hc-----cCCCCCCCCCC--C-cccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc--hhhHH
Q 000941 298 HLTLEY-LS-----YDPNFTDNMEE--D-SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EMLSK 366 (1215)
Q Consensus 298 ~~~l~~-l~-----~dpn~~~~~d~--d-~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~--~~l~~ 366 (1215)
+..+.. +. .-+||..-.|- + ..-+..++--+-. -++|-|| +-..|+..+.+...++...| +.=..
T Consensus 680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~-v~~lkde---~e~yrkm~~etv~ri~~~lg~~dider 755 (1172)
T KOG0213|consen 680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV-VLDLKDE---PEQYRKMVAETVSRIVGRLGAADIDER 755 (1172)
T ss_pred HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH-hhhhccc---cHHHHHHHHHHHHHHHhccccccccHH
Confidence 433322 21 11233210000 0 0000000000000 0111111 23679999999999888765 21122
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHH
Q 000941 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1215)
Q Consensus 367 ~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~ 446 (1215)
+-+.++..+.-.|++...++. -++.+++++++..+. ..+.++|+|+..+...|+.+++++|+.|
T Consensus 756 leE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~---------------r~kpylpqi~stiL~rLnnksa~vRqqa 819 (1172)
T KOG0213|consen 756 LEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGG---------------RVKPYLPQICSTILWRLNNKSAKVRQQA 819 (1172)
T ss_pred HHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhh---------------ccccchHHHHHHHHHHhcCCChhHHHHH
Confidence 333444444555654432222 356778888887652 3467899999999999999999999999
Q ss_pred HHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCch
Q 000941 447 FSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYY 525 (1215)
Q Consensus 447 ~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~ 525 (1215)
..+.+.++.....+-.. .+..+=-.+...|.... +.+.-..+.++.++...++-....|=+..|+|.+..-+.++..
T Consensus 820 adlis~la~Vlktc~ee~~m~~lGvvLyEylgeey--pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrhe 897 (1172)
T KOG0213|consen 820 ADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEY--PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE 897 (1172)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCccc--HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHH
Confidence 99999998765433111 12222223445555433 5555556677777777776666777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHH
Q 000941 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLP 605 (1215)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~ 605 (1215)
+|...++..++.++...... -.-..++.-.| .+++.|++. ..++|.+|...+|.++...|. +.++.
T Consensus 898 KVqen~IdLvg~IadrgpE~-----v~aREWMRIcf-eLlelLkah--kK~iRRaa~nTfG~IakaIGP------qdVLa 963 (1172)
T KOG0213|consen 898 KVQENCIDLVGTIADRGPEY-----VSAREWMRICF-ELLELLKAH--KKEIRRAAVNTFGYIAKAIGP------QDVLA 963 (1172)
T ss_pred HHHHHHHHHHHHHHhcCccc-----CCHHHHHHHHH-HHHHHHHHH--HHHHHHHHHhhhhHHHHhcCH------HHHHH
Confidence 99999999999988642110 11234444333 345556533 578999999999999988775 56788
Q ss_pred HHHHhhccch--hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHH
Q 000941 606 VLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYE 683 (1215)
Q Consensus 606 ~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~ 683 (1215)
.|++.|+-+. .|..+--+++.++.. + .|| .++|.|..--+.++-.++...+.+++-+++..+. ++.+++-
T Consensus 964 tLlnnLkvqeRq~RvcTtvaIaIVaE~--c---~pF--tVLPalmneYrtPe~nVQnGVLkalsf~Feyige-mskdYiy 1035 (1172)
T KOG0213|consen 964 TLLNNLKVQERQNRVCTTVAIAIVAET--C---GPF--TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIY 1035 (1172)
T ss_pred HHHhcchHHHHHhchhhhhhhhhhhhh--c---Cch--hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHH
Confidence 8888876544 344444445555432 1 222 3566666666777888999999999999988775 4556777
Q ss_pred HHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 684 VIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 684 ~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.+.+-|-..+.+.|+.-++.+..++..++-.
T Consensus 1036 av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 7777777778899999999999999998874
No 16
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.82 E-value=1.2e-15 Score=167.59 Aligned_cols=737 Identities=15% Similarity=0.149 Sum_probs=438.8
Q ss_pred hHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchh
Q 000941 41 ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSS 119 (1215)
Q Consensus 41 ~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~ 119 (1215)
+..++++...+|+ ....++.-|..+.+.|..-+...++ -..+.+++-|+..-.++ +.|..-.-.+..+.-++..
T Consensus 164 e~~Er~v~rllLk-vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD--qerhl~vk~idr~Ly~ldd-- 238 (975)
T COG5181 164 EGDERDVYRLLLK-VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED--QERHLVVKLIDRLLYGLDD-- 238 (975)
T ss_pred ccchHhHHHHHhh-cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh--hhhHhHHHHHHHHHHhccc--
Confidence 3445555555544 4556778889999888765543333 34456666666544333 3344444444444444432
Q ss_pred hHHHHHHhHh----HHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 000941 120 LAQSIHTSLT----PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIA 195 (1215)
Q Consensus 120 ~~~~~~~~l~----p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~ 195 (1215)
+..++.++|+ |.++. ++.-++...-+++..+..+.|-.. ++..+-+.+.+.++-||.-...+.+
T Consensus 239 l~~pyvhkILvVv~pllid------ed~~~r~~g~eii~nL~~~~Gl~~------~vs~mrpDi~~~deYVRnvt~ra~~ 306 (975)
T COG5181 239 LKVPYVHKILVVVGPLLID------EDLKRRCMGREIILNLVYRCGLGF------SVSSMRPDITSKDEYVRNVTGRAVG 306 (975)
T ss_pred ccccceeeEEEEeeccccC------ccHHHhcccHHHHHHHHHHhccce------eeeeccCCcccccHHHHHHHHHHHH
Confidence 3334445443 44432 256677777788888888877643 2344456677788899999999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 196 SLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 196 ~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
.++.+++-+.+..+++.+... ..+| +.|.+.+.+...|+.-.|....+|+..++..+-+.+. |+.--+|-.+.
T Consensus 307 vva~algv~~llpfl~a~c~S--rkSw--~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~---D~~~~vRi~tA 379 (975)
T COG5181 307 VVADALGVEELLPFLEALCGS--RKSW--EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLK---DRSRFVRIDTA 379 (975)
T ss_pred HHHHhhCcHHHHHHHHHHhcC--ccch--hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhh---ccceeeeehhH
Confidence 999988876544444333321 1234 7889999999999999998889999999999988887 45666777777
Q ss_pred HHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHH
Q 000941 276 QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1215)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~ 355 (1215)
.++..+++... ||--..++.++.-+.- .+|+---+.|.+
T Consensus 380 ~alS~lae~~~----Pygie~fd~vl~pLw~-------------------------------------g~~~hrgk~l~s 418 (975)
T COG5181 380 NALSYLAELVG----PYGIEQFDEVLCPLWE-------------------------------------GASQHRGKELVS 418 (975)
T ss_pred hHHHHHHHhcC----CcchHHHHHHHHHHHH-------------------------------------HHHhcCCchHHH
Confidence 77777766432 4433333333332210 123222233333
Q ss_pred HHhh--------CchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccC---------------CCcCCCC
Q 000941 356 LIVS--------RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVT---------------KGQIDNN 412 (1215)
Q Consensus 356 li~~--------~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~---------------~~~~~~~ 412 (1215)
+++. .|++...+-...+..+..-|+.+.++.+..+... -..+..++... .|.+...
T Consensus 419 fLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v-~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A 497 (975)
T COG5181 419 FLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVV-ERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSA 497 (975)
T ss_pred HHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHH-HHHHhccCCCCHHHHHHhhcHHhhchHHHhhhc
Confidence 3332 2444444444555666666776666655543322 23333333211 1221000
Q ss_pred C--------CChhhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch-hhhh-hhhhhhHHHHHhhcCCC
Q 000941 413 E--------LNPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD-CLAD-HIGSLIPGIEKSLNDKS 480 (1215)
Q Consensus 413 ~--------~~~~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~-~l~~-~~~~lv~~l~~~l~d~~ 480 (1215)
. .-....+.... |.++..+...++|+.++.|.....+....+..+|. ++.+ ....+...++.++++..
T Consensus 498 ~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~ 577 (975)
T COG5181 498 GDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD 577 (975)
T ss_pred ccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc
Confidence 0 00001223333 67777788888888777777777666666665543 2433 45556777777877655
Q ss_pred CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHH
Q 000941 481 STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1215)
Q Consensus 481 ~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1215)
+...+- +.+++.++.+.+ ...+||++.|+..++..+.++.+.++..|...++.+...+.... -...+..+
T Consensus 578 ~t~~~i---l~~f~tv~vsl~-~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~------e~~~l~kl 647 (975)
T COG5181 578 TTVGLI---LPCFSTVLVSLE-FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACG------ETKELAKL 647 (975)
T ss_pred ccccEE---Eecccceeeehh-hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcc------hHHHHHHH
Confidence 333322 223333332221 24578999999999999999999999999999999988775431 12234444
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHH-cCCCCCch
Q 000941 561 YNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIA-ASPLHIDL 636 (1215)
Q Consensus 561 ~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~-~s~~~~~~ 636 (1215)
=..+.+.+. ..++||--.-+.++..+...-+- .+.|-...++|.+...|+|. -...+++..+|.|+ .++.....
T Consensus 648 g~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~ 725 (975)
T COG5181 648 GNILYENLG--EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV 725 (975)
T ss_pred hHHHHHhcC--cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence 444556554 44688887777777776665542 45555555566665555553 35567899999999 56555555
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhccc
Q 000941 637 TCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKR 716 (1215)
Q Consensus 637 ~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~ 716 (1215)
..|..-+. .|...|.+.+..+|.+|..+++-|.+..|. +.++..|...+...+.|.+-.+--+++-+.+.|
T Consensus 726 rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c- 796 (975)
T COG5181 726 REWMRICF-ELVDSLKSWNKEIRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYC- 796 (975)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-
Confidence 67886665 467788888999999999999999988775 557777778887778877655444555444432
Q ss_pred CCCchhhhhhhhhHHHHHHHhhhcc--cchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhHH
Q 000941 717 SSPNVGLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIA 794 (1215)
Q Consensus 717 ~~p~~~~~~~~~~l~~l~~ll~s~~--l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a 794 (1215)
.|- .++|.++.--..|. +|...|.+...+|+-+++........+.+-+-+.+. + .+.++++.-.++.
T Consensus 797 -gpf-------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt-D--rD~vhRqta~nvI 865 (975)
T COG5181 797 -GPF-------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT-D--RDPVHRQTAMNVI 865 (975)
T ss_pred -Cch-------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc-c--cchHHHHHHHHHH
Confidence 222 57888887666664 678888999999988887654343333333322222 2 2234577655555
Q ss_pred HHHHHHHhhcCCc-chhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCchhHhhHHHHHH
Q 000941 795 QCVAVLCLAAGDQ-KCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYAL 873 (1215)
Q Consensus 795 ~~i~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e~vR~aAa~aL 873 (1215)
+-+..-+.+.|.. .+--.++-+++.+-.+++....-...++-.+....+. .-...-+.+-+-+++..||+.-+..+
T Consensus 866 ~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~---g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 866 RHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS---GAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred HHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc---HHHHHHHHHhccCchHHHHHHHHHHH
Confidence 5444444444432 2334566666666544332111112222222222221 12344455556677777877766655
Q ss_pred Hhhhh
Q 000941 874 GNIAV 878 (1215)
Q Consensus 874 G~l~~ 878 (1215)
-.+-+
T Consensus 943 n~myv 947 (975)
T COG5181 943 NIMYV 947 (975)
T ss_pred hhhhh
Confidence 54443
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.5e-17 Score=185.28 Aligned_cols=465 Identities=18% Similarity=0.223 Sum_probs=340.2
Q ss_pred CCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc
Q 000941 38 KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT 117 (1215)
Q Consensus 38 ~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~ 117 (1215)
..++.....++..++..++.|++.||....+|+.+++..........+...+...+..++-..|..++.++..++.+...
T Consensus 88 ~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i 167 (569)
T KOG1242|consen 88 QIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI 167 (569)
T ss_pred cccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH
Confidence 34556778899999999999999999999999999998777666667777777777666667789999999988876553
Q ss_pred hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 000941 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASL 197 (1215)
Q Consensus 118 ~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1215)
.... =..++..+..++++.+ ....|+.+.-+........|....||...+++.++..+.+....||.+|..+.-.+
T Consensus 168 ~~~~---~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 168 ESLK---EFGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAI 243 (569)
T ss_pred hhhh---hhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHH
Confidence 1111 1235556677777765 45556678888888889999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHH
Q 000941 198 ASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQA 277 (1215)
Q Consensus 198 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~ 277 (1215)
..+++..-.+.+++.++..+....| +....+++.+|.++.+.|..+.-+++.++|.+.+.+. |...++|+++.++
T Consensus 244 ~~~~~~~aVK~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~---DT~~evr~a~~~~ 318 (569)
T KOG1242|consen 244 MRCLSAYAVKLLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW---DTKPEVRKAGIET 318 (569)
T ss_pred HHhcCcchhhHhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc---cCCHHHHHHHHHH
Confidence 9999888888899999999888888 5677899999999999999999999999999999998 6899999999998
Q ss_pred HHHHHHhCh-hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHH
Q 000941 278 LESFLLRCP-RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAAL 356 (1215)
Q Consensus 278 l~~l~~~~~-~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~l 356 (1215)
+-.+..... .++.+|+|.++..+ .||+.. ..+|+..+
T Consensus 319 l~~~~svidN~dI~~~ip~Lld~l-----~dp~~~-------------------------------------~~e~~~~L 356 (569)
T KOG1242|consen 319 LLKFGSVIDNPDIQKIIPTLLDAL-----ADPSCY-------------------------------------TPECLDSL 356 (569)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHh-----cCcccc-------------------------------------hHHHHHhh
Confidence 888765432 25666666655543 355410 11233444
Q ss_pred Hhh-Cchhh-HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000941 357 IVS-RPEML-SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQ 434 (1215)
Q Consensus 357 i~~-~~~~l-~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~ 434 (1215)
..+ +-+.+ .+-+..+.|.|.+.+++|+-..+..++..++-+++-+. .| ..+..++|.+++.+...
T Consensus 357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve------------Dp-~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE------------DP-KDLAPFLPSLLPGLKEN 423 (569)
T ss_pred cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc------------CH-HHHhhhHHHHhhHHHHH
Confidence 333 22222 24566788888888999998888777777666666542 13 36788999999999999
Q ss_pred hcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHH
Q 000941 435 LREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1215)
Q Consensus 435 L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p 514 (1215)
+.+..+.+|..+..+|+.+.+..+. ..++...|.+...+.+... ..-+..+...++.++.+.+- .++..++|
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~---~~f~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~~~~v----~~~~~~~~ 495 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGE---VSFDDLIPELSETLTSEKS-LVDRSGAAQDLSEVLAGLGV----EKVEDILP 495 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHh---hcccccccHHHHhhccchh-hhhhHHHhhhHHHHHhcccc----hHHHHHHH
Confidence 9998888999999999999886432 3457888888887765432 33466777777887776553 34556666
Q ss_pred HHHHHhcCC--chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 000941 515 PVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAIS 583 (1215)
Q Consensus 515 ~l~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~ 583 (1215)
.+.+..... +++++..-+..+ .+.-..+ +..+.+|+.++++.+++++.+. +..++..++.
T Consensus 496 ~~~a~~~~~~~~~~~~dg~~~~~-~~lp~~~------~~~~~~yi~~i~~~~~k~~ad~--de~~~~~~~~ 557 (569)
T KOG1242|consen 496 EILANASSVLIDERIRDGVIWLF-YLLPYIF------GFQFQPYIHEILDEFLKGLADN--DEKGRDTALE 557 (569)
T ss_pred HHHHHHhhccchhhhccCeeehh-hccchhh------hHHhHHHHHHHHHHHHHHhhhc--CCccccchhh
Confidence 666655422 222322211111 1111111 4568999999999999998744 4445544443
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.76 E-value=1.3e-14 Score=159.53 Aligned_cols=646 Identities=15% Similarity=0.182 Sum_probs=383.4
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCC-ChHHHHHHHHHHH-HhccCcccchhHHHHHHHHHHhhccCh---
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKA-DADLEVKLSNIVV-QQLDDVAGDVSGLAVKCLAPLVKKVSE--- 79 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~-~~~~~~~i~~~ll-~~L~D~~~~Vq~~A~~~l~~l~~~~~~--- 79 (1215)
.+-.++-|.++..+..|.-++--|...- .+. ......+++++++ +.|+|+. |+..++.|-.+..++..
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdka----v~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~ 241 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKA----VNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKV 241 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHh----hcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhcccccc
Confidence 4566777888888888877765553221 111 1234455555555 3444543 34555555555433221
Q ss_pred hhH----------------------HHHHHHHHHHhc-------------CCCcchhhHHHHHHHHHHhccCchhhHHHH
Q 000941 80 PRV----------------------VEMTDKLCIKLL-------------NGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1215)
Q Consensus 80 ~~~----------------------~~lv~~L~~~~~-------------~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1215)
+++ .+++-.|..... +.++-+|.+.+.|...++..++
T Consensus 242 pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg-------- 313 (975)
T COG5181 242 PYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALG-------- 313 (975)
T ss_pred cceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhC--------
Confidence 010 123333332221 1122356666666666555443
Q ss_pred HHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC--
Q 000941 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS-- 202 (1215)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~-- 202 (1215)
+..++|-|-....+.+ +++.|+.++.+...++.-.|....+|...+++++-..+.+.+.-||--+..+++.++...+
T Consensus 314 v~~llpfl~a~c~Srk-Sw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Py 392 (975)
T COG5181 314 VEELLPFLEALCGSRK-SWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPY 392 (975)
T ss_pred cHHHHHHHHHHhcCcc-chhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCc
Confidence 2344554433333333 6899999999999999999999889999999999999999888888888888888877654
Q ss_pred -HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH
Q 000941 203 -DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1215)
Q Consensus 203 -~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1215)
-+.|+.++..+.++.+..... .-...+.+.|.|.--. |.-..-|-...|.+++..++. .|++.+...+.. ++
T Consensus 393 gie~fd~vl~pLw~g~~~hrgk--~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s---pdeemkk~~l~v-~~ 466 (975)
T COG5181 393 GIEQFDEVLCPLWEGASQHRGK--ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS---PDEEMKKDLLVV-ER 466 (975)
T ss_pred chHHHHHHHHHHHHHHHhcCCc--hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC---chhhcchhHHHH-HH
Confidence 456888998898888765432 2223344444443222 222333456788888887773 456555443322 22
Q ss_pred HHHhChhh-hcccHHHHHHHHH-HHhc----cC-CCCCCCCC--CCcccccccccchhhhcCCCCCCCCccHHHHHHHHH
Q 000941 281 FLLRCPRD-ISSYCDEILHLTL-EYLS----YD-PNFTDNME--EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAK 351 (1215)
Q Consensus 281 l~~~~~~~-~~~~l~~ii~~~l-~~l~----~d-pn~~~~~d--~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~ 351 (1215)
.+...... -.-+-+++.+... .++. .| |.|..-.. .--.-+..+-.--+-.-+.|+|+.+ ..|+.++.
T Consensus 467 ~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~e---p~r~m~a~ 543 (975)
T COG5181 467 ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPE---PYRKMNAG 543 (975)
T ss_pred HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcc---hhhhhhhH
Confidence 22221110 0011122222211 1111 00 00100000 0000000000000000122333322 56888888
Q ss_pred HHHHHHhhCc--hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHH
Q 000941 352 CLAALIVSRP--EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVK 429 (1215)
Q Consensus 352 ~L~~li~~~~--~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~ 429 (1215)
+...++...| +.=+.+-+.+...+...|++..-.+. -++.|+++++...+. ..+.+++.|+.
T Consensus 544 ~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~---------------r~kp~l~~ivS 607 (975)
T COG5181 544 LVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEF---------------RGKPHLSMIVS 607 (975)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhh---------------ccCcchHHHHH
Confidence 8888877655 11111222233333444544432222 134455555443320 22567899999
Q ss_pred HHHHHhcccChhhHHHHHHHHHHHHHhCchhhh-hhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhh
Q 000941 430 SINRQLREKSIKTKVGAFSVLRELVVVLPDCLA-DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY 508 (1215)
Q Consensus 430 ~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~-~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 508 (1215)
.+.+.|+.+.+.+|+.|..+.+.++..+..+-. ..+..+=..+...+.... +.+.-..+.++.++...|+-..++|-
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~y--pEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDY--PEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCccc--HHHHHHHHHHHHHHhhhhcccccCCc
Confidence 999999999999999999999998876543221 233333334445555433 55555667777888888887888888
Q ss_pred hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000941 509 IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 509 l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
+..|+|.+..-+.++..+|....+..++.++...... -..+.++.-.+ .+++.|++ .+.++|.+|...+|.+
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-----i~~rEWMRIcf-eLvd~Lks--~nKeiRR~A~~tfG~I 757 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-----IGVREWMRICF-ELVDSLKS--WNKEIRRNATETFGCI 757 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-----CCHHHHHHHHH-HHHHHHHH--hhHHHHHhhhhhhhhH
Confidence 9999999999999999999999999999988653211 12234544433 34455553 3689999999999999
Q ss_pred HHhccCcccchhhhhHHHHHHhhccch--hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000941 589 ISTFGDNLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTM 666 (1215)
Q Consensus 589 ~~~~~~~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L 666 (1215)
....|. +.++.+|++.|+-+. .|..+.-+++.++.- + .|| .++|.|..--+.++..++...+.++
T Consensus 758 s~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~--c---gpf--sVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 758 SRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY--C---GPF--SVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred HhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh--c---Cch--hhHHHHHhcccCchhHHHHhHHHHH
Confidence 888765 567888888886554 344444455555532 1 121 3566666656677888999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcc
Q 000941 667 NSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADK 715 (1215)
Q Consensus 667 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~ 715 (1215)
+-+.+..+. .+.+++-.+.+-+-..+.+.|+.-++.+...+..++-+|
T Consensus 825 ~fmFeyig~-~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 825 CFMFEYIGQ-ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 999888765 233456666666677788999999999999999998853
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.6e-13 Score=153.27 Aligned_cols=520 Identities=16% Similarity=0.216 Sum_probs=326.9
Q ss_pred cCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCC-cchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHh
Q 000941 56 DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTK 134 (1215)
Q Consensus 56 ~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~-~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~ 134 (1215)
.|++.+|+..=.+........-+.+++..+.+.--+.+.+.. ...|+....--.++--.... ..+-...++-.+++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~---~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI---VDPRPISIIEILLE 103 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc---cCcchhHHHHHHHH
Confidence 688888887666555555554445555555555544443322 11222111111111111111 01112334445555
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH--HHHHHH
Q 000941 135 GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL--AKATIE 212 (1215)
Q Consensus 135 ~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~~~ 212 (1215)
.+.. |.+.++.....+|..+....... .....++.+.+.++.....-|+.+..++..+....+-..+ ..++..
T Consensus 104 ~~~t--ps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 104 ELDT--PSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN 178 (569)
T ss_pred hcCC--CcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence 5443 35777777777666554433321 2345556666667766778888888888888776655433 235666
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh-hhcc
Q 000941 213 VVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISS 291 (1215)
Q Consensus 213 ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~ 291 (1215)
+...+++.+. ...|+.+..++.......|..|.||+..+.|.++.... |-..++|+++..+...+.+..+. .++.
T Consensus 179 l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~---d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 179 LSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG---DKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 6666665443 24566788899999999999999999999999999887 56889999999999888877652 3433
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHH
Q 000941 292 YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1215)
Q Consensus 292 ~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i 371 (1215)
+++.++..+. +..|+-..+++..++.+..+.|..+...++.+
T Consensus 255 llpsll~~l~--------------------------------------~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 255 LLPSLLGSLL--------------------------------------EAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred hhhhhHHHHH--------------------------------------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 4444333221 11699999999999999999999999999999
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHH
Q 000941 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1215)
Q Consensus 372 ~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1215)
+|.+.+.+.|..++||.....++..+.....+ | .++ .+++.+..++.+++..+. .|...|+
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN------------~--dI~----~~ip~Lld~l~dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN------------P--DIQ----KIIPTLLDALADPSCYTP-ECLDSLG 357 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc------------H--HHH----HHHHHHHHHhcCcccchH-HHHHhhc
Confidence 99999999999999999999888887765432 2 344 444555556666664444 3333333
Q ss_pred H--HHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC-CCCcchhhhhhhHHHHHHHhcCCchHHH
Q 000941 452 E--LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH-SPPVFHPYIKALSSPVLAAVGERYYKVT 528 (1215)
Q Consensus 452 ~--L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~l~~l~p~l~~~l~d~~~~v~ 528 (1215)
. ++... -.+.+.-++|.+.+.+.+++. ..+-.+...++.+++-. .+..+.||++.++|.+-..+.|..+++|
T Consensus 358 ~ttFV~~V---~~psLalmvpiL~R~l~eRst--~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 358 ATTFVAEV---DAPSLALMVPILKRGLAERST--SIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred ceeeeeee---cchhHHHHHHHHHHHHhhccc--hhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 2 22221 125788889999999998874 33444444445554433 4678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHH
Q 000941 529 AEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 608 (1215)
Q Consensus 529 ~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~ 608 (1215)
..+..+++.+.+.++.. .| +.+.|.+.+.++.... .--|..+...++.++...|. .++..+++-+.
T Consensus 433 ~vaarAL~~l~e~~g~~------~f----~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~~ 498 (569)
T KOG1242|consen 433 AVAARALGALLERLGEV------SF----DDLIPELSETLTSEKS-LVDRSGAAQDLSEVLAGLGV---EKVEDILPEIL 498 (569)
T ss_pred HHHHHHHHHHHHHHHhh------cc----cccccHHHHhhccchh-hhhhHHHhhhHHHHHhcccc---hHHHHHHHHHH
Confidence 99999999999887653 22 3334444444332211 22245556666666655543 34555555544
Q ss_pred Hhhcc----chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000941 609 DRMGN----EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLG 664 (1215)
Q Consensus 609 ~~L~~----e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~ 664 (1215)
....+ +..|..-++.+.-+- .....++.+|+.++++.+...+.+.++..+..+++
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~lp-~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLLP-YIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred HHHhhccchhhhccCeeehhhccc-hhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 32221 112222222221111 11234568999999998888887777766655544
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.2e-12 Score=153.45 Aligned_cols=602 Identities=16% Similarity=0.133 Sum_probs=371.7
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCC-hHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKAD-ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
....+..+..|+.|.+|..++-=|...+++-..+.. .-...+|.......|.|.+.-+|-.|.+-+|-.-.--...--.
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 344555667999999999998777666655322111 1345667788889999999999999999997544322233335
Q ss_pred HHHHHHHHHhcCCCcch------------------hhH-HHHH---HHHHHhccCchhhHHHHHHhHhHHHHhhhhccCC
Q 000941 84 EMTDKLCIKLLNGKDQH------------------RDI-ASIA---LKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDM 141 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~------------------r~~-a~~a---L~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~ 141 (1215)
.+++.|.+.+..++-.. .++ .... |-++.++++.+++.- ++ ..|.+.+.
T Consensus 899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVY--------KF-M~LAnh~A 969 (1702)
T KOG0915|consen 899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVY--------KF-MQLANHNA 969 (1702)
T ss_pred HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHH--------HH-HHHhhhhc
Confidence 67777776664332100 001 0111 222223333322221 11 12333344
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHhh
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASS---LSDDLLAKATIEVVRNLR 218 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~---~~~~~~~~l~~~ll~~l~ 218 (1215)
.|.-+.+|..-++.++++.|..+.||...+++.+..+--||+..|+..-...-+.+..- .-+.++++++..++..+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 68889999999999999999999999999999999999999999998877777777643 234478889999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhh----cccH
Q 000941 219 SKGAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI----SSYC 293 (1215)
Q Consensus 219 ~~~~~~~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~----~~~l 293 (1215)
+..| .+|+.++.++..+.++-| ..+..+++.+-..++..+. |-.+.+|+++-.+...+..-|-... ..--
T Consensus 1050 ~kew--RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD---DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1050 SKEW--RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD---DIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred chhH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 8888 699999999999999766 5677788888888888775 4567799988777666644332111 1122
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHH
Q 000941 294 DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACP 373 (1215)
Q Consensus 294 ~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p 373 (1215)
.+++..++.++- |+.. .++ --.||+.+..++-.+++..|..+.+++.+++|
T Consensus 1125 ~~~l~~iLPfLl-~~gi------------------------ms~----v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp 1175 (1702)
T KOG0915|consen 1125 KEALDIILPFLL-DEGI------------------------MSK----VNEVRRFSIGTLMDLAKSSGKELKPHFPKLIP 1175 (1702)
T ss_pred HHHHHHHHHHHh-ccCc------------------------ccc----hHHHHHHHHHHHHHHHHhchhhhcchhhHHHH
Confidence 344555555542 2211 111 12689999999999999999999999999999
Q ss_pred HHHhhhcccchhHHHHH-HHHHHH---HHHHhcccCCCcCCCC-C--CChhhHH-HHHHHHHHHHHHHHhccc-ChhhHH
Q 000941 374 KLIDRFKEREENVKMDV-FNTFIE---LVRQTGNVTKGQIDNN-E--LNPRWLL-KQEVSKIVKSINRQLREK-SIKTKV 444 (1215)
Q Consensus 374 ~Li~~~~d~e~~Vr~~~-~~~l~~---l~~~~~~~~~~~~~~~-~--~~~~~~L-~~~~p~i~~~l~~~L~~~-~~~~r~ 444 (1215)
.|+..+.+-|+.|-.-. .++... .+...+.+ -.+..+. + +.+...+ .+.+..+++.+.+.++.. ...+|.
T Consensus 1176 ~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s-~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkv 1254 (1702)
T KOG0915|consen 1176 LLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS-AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKV 1254 (1702)
T ss_pred HHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh-hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 99988877776664321 111000 00000000 0000000 0 0000000 123345555555555544 346899
Q ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCc
Q 000941 445 GAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY 524 (1215)
Q Consensus 445 ~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~ 524 (1215)
+|..++..|+...+..+.|+...++..++..++|++ +.++..-...++.+++..+++.++.++..++..+.....+.+
T Consensus 1255 g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN--esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~ 1332 (1702)
T KOG0915|consen 1255 GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN--ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK 1332 (1702)
T ss_pred hHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999977 677777778889999887776776666666655554433322
Q ss_pred hHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCC---HHHHHHHHHHHHHHHHhccCcccc-hh
Q 000941 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD---QEVKECAISCMGLVISTFGDNLGA-EL 600 (1215)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~---~~Vr~~Ai~~lg~l~~~~~~~l~~-~~ 600 (1215)
+ .+..++..+..+. ...+..|.+.++|.++=.. .+.+ ++++.. .+.+++. .|..--+ +.
T Consensus 1333 -s---iscatis~Ian~s-------~e~Lkn~asaILPLiFLa~--~ee~Ka~q~Lw~d---vW~e~vs-ggagtvrl~~ 1395 (1702)
T KOG0915|consen 1333 -S---ISCATISNIANYS-------QEMLKNYASAILPLIFLAM--HEEEKANQELWND---VWAELVS-GGAGTVRLYL 1395 (1702)
T ss_pred -c---hhHHHHHHHHHhh-------HHHHHhhHHHHHHHHHHHH--hHHHHHHHHHHHH---HHHHhCC-CCcchhhhhH
Confidence 2 3344444444332 2246788888999766432 2221 222211 1112111 1222223 66
Q ss_pred hhhHHHHHHhhccch---hHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000941 601 PACLPVLVDRMGNEI---TRLTAVKAFAVIAASPLHIDL-TCVLEHVIAELTAFLRKANRALRQATLGTMNSLV 670 (1215)
Q Consensus 601 ~~~l~~L~~~L~~e~---~r~~a~~al~~i~~s~~~~~~-~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 670 (1215)
..++..+++...++. .|..+.+++-.++... .... .|++-.+.+.+...+..--+.-+.-.+.++...+
T Consensus 1396 ~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~-sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~ 1468 (1702)
T KOG0915|consen 1396 LEILNLICENITNNESWKLRKQAAKAIRVIAEGL-SSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAF 1468 (1702)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc-cccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 777777776665543 4556666666666221 1111 3555555555555554433444444444444433
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=5.3e-12 Score=153.44 Aligned_cols=573 Identities=18% Similarity=0.232 Sum_probs=335.3
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-h----hHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccC
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-P----RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~----~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~ 116 (1215)
.....+...+.+.+.+||+.+|.++.--+=.++.+++. + ...+|.......+.+.++-.+|+|+.+|+-+- +++
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVY-elg 892 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVY-ELG 892 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEE-ecC
Confidence 34556777788889999999999998777777777662 1 12455545555555666668899999998554 344
Q ss_pred chhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 000941 117 TSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1215)
Q Consensus 117 ~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1215)
.........+.++..|..|=... ..|..+. ++ |.+ ..|......=+-...+=|..
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~---~~vs~eT-----el---Fq~--------------G~Lg~Tp~Gg~isTYKELc~ 947 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKA---IKVSEET-----EL---FQE--------------GTLGKTPDGGKISTYKELCN 947 (1702)
T ss_pred CchhHHHHHHHHHHHHhcccccc---ceeccch-----hc---ccC--------------CcCCCCCCCCcchHHHHHHH
Confidence 33455555666666665422111 0111110 00 000 11221100111123344556
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 197 LASSLSDDLLAKATIEVVRNLRS-KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 197 l~~~~~~~~~~~l~~~ll~~l~~-~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
|+.-+++. +++=.+++...+ ..| ..|+.+-.-||+|+..++.++.||++++||.+..+-= |.|..++.+..
T Consensus 948 LASdl~qP---dLVYKFM~LAnh~A~w--nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~y---DP~~~Vq~aM~ 1019 (1702)
T KOG0915|consen 948 LASDLGQP---DLVYKFMQLANHNATW--NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQY---DPDKKVQDAMT 1019 (1702)
T ss_pred HHhhcCCh---HHHHHHHHHhhhhchh--hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhcc---CCcHHHHHHHH
Confidence 66655554 222233333333 345 4677888899999999999999999999999998765 67888999988
Q ss_pred HHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHH
Q 000941 276 QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1215)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~ 355 (1215)
..|..++.--...+..|+++|+.-++..+. +--|+||++++.+|..
T Consensus 1020 sIW~~Li~D~k~~vd~y~neIl~eLL~~lt----------------------------------~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 1020 SIWNALITDSKKVVDEYLNEILDELLVNLT----------------------------------SKEWRVREASCLALAD 1065 (1702)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhcc----------------------------------chhHHHHHHHHHHHHH
Confidence 888888876566788899999998887764 1129999999999999
Q ss_pred HHhhCc-hhhHHHHHHHHHHHHhhhcccchhHHHHHHHH---HHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHH
Q 000941 356 LIVSRP-EMLSKLYEEACPKLIDRFKEREENVKMDVFNT---FIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI 431 (1215)
Q Consensus 356 li~~~~-~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~---l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l 431 (1215)
++..+| +.+.+...++...+...+.|=.|.||..+-.+ ++.++-..... .++. .-.+.+..+++.+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~--------~~~~--~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV--------TNGA--KGKEALDIILPFL 1135 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------CCcc--cHHHHHHHHHHHH
Confidence 999987 33333333333334344466678999876444 44443332211 1111 1133444555544
Q ss_pred HHH-hcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCc---------chhHHHHHHHHHHHhccCC
Q 000941 432 NRQ-LREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---------SNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 432 ~~~-L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~---------~~~~~~al~~l~~l~~~~~ 501 (1215)
... ..++...+|..++.++-.|+...|+.+.||++.++|.+..++..-... .+.-.+++..++.=+....
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence 322 224556799999999999999999999999999999999887533210 1122334433332222111
Q ss_pred C---------Ccc-hhhhhhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc
Q 000941 502 P---------PVF-HPYIKALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN 570 (1215)
Q Consensus 502 ~---------~~~-~~~l~~l~p~l~~~l~d~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 570 (1215)
| +.. ...+..++|.+...+...-- ..+..+-.++..++..+ +.++.||...++..++..++
T Consensus 1216 pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-------~~emtP~sgKll~al~~g~~- 1287 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-------GSEMTPYSGKLLRALFPGAK- 1287 (1702)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-------ccccCcchhHHHHHHhhccc-
Confidence 1 000 01356667777666643211 11122233344455444 56799999999999999876
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 000941 571 QDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA 649 (1215)
Q Consensus 571 ~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~ 649 (1215)
|....+|..-..++|.++....+ .....+...+.-++. +.+..+..++..+..|+... ..-+..|...++|..
T Consensus 1288 -dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~--k~es~~siscatis~Ian~s-~e~Lkn~asaILPLi-- 1361 (1702)
T KOG0915|consen 1288 -DRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLG--KDESLKSISCATISNIANYS-QEMLKNYASAILPLI-- 1361 (1702)
T ss_pred -cccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc--cCCCccchhHHHHHHHHHhh-HHHHHhhHHHHHHHH--
Confidence 56788898889999999877643 332333333333222 23333455566655555321 233566667777743
Q ss_pred HHH-----HhhhHHHHHHHHHHHHHHHHh-CCCCC--cchHHHHHHHhhhhcCCCC-hhhHHHHHHHHHHHhh
Q 000941 650 FLR-----KANRALRQATLGTMNSLVVAY-GDKIG--ASAYEVIIVELSTLISDSD-LHMTALALELCCTLMA 713 (1215)
Q Consensus 650 ~L~-----~~~~~lr~~al~~L~~l~~~~-~~~~~--~~~~~~~l~~l~~~l~~~d-~~~~~~al~~l~~l~~ 713 (1215)
||. +.+..++. .+.... +.... .=+..+++..++..+..++ -.++..+...+..++.
T Consensus 1362 FLa~~ee~Ka~q~Lw~-------dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~ 1427 (1702)
T KOG0915|consen 1362 FLAMHEEEKANQELWN-------DVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAE 1427 (1702)
T ss_pred HHHHhHHHHHHHHHHH-------HHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 232 22223332 222221 21111 1145667777776665555 3445555555555444
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.55 E-value=3.7e-11 Score=147.47 Aligned_cols=474 Identities=16% Similarity=0.185 Sum_probs=311.7
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHH
Q 000941 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTD 87 (1215)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~ 87 (1215)
.++.-+.+.|...|.++---+..... .+++...-++..+.+-|+++|+.+|..|.++++.+. .++-.+.+++
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~-----~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~ 117 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLH-----EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIP 117 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTT-----TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHH
Confidence 34444556666666665544433332 355666778999999999999999999999999987 4567788888
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHh-HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh
Q 000941 88 KLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTS-LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1215)
Q Consensus 88 ~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~-l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1215)
.+...+.++++.+|..|+.|+..++...|. .++. ++|.+.+.+.+. ++.|+..|+.++.++ ++.......
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~------~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~~~~~~~~~ 188 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPD------LVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI-KCNDDSYKS 188 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHC------CHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH-HCTHHHHTT
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHH------HHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH-ccCcchhhh
Confidence 898889899999999999999999876553 2233 577777777665 589999999999999 333333224
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhh
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1215)
..+.+.+.+...+..+++-++...+..+..++.......- ..+++.+...+++.+. .+ .++++..+..-.+..
T Consensus 189 ~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~--~V---~~e~~~~i~~l~~~~- 262 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP--SV---VYEAIRLIIKLSPSP- 262 (526)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHSSSH-
T ss_pred hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc--HH---HHHHHHHHHHhhcch-
Confidence 4566666666666778888888888888877654333221 4577777777764332 33 345555554433221
Q ss_pred ccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccc
Q 000941 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEE 325 (1215)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~ 325 (1215)
+.+..+++.+...+. +.+.++|-.+++++..++...|..+. +.... +.++.+++
T Consensus 263 -~~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~----~~~l~~~~----------------- 316 (526)
T PF01602_consen 263 -ELLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI----LFFLLYDD----------------- 316 (526)
T ss_dssp -HHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH----HHHHHCSS-----------------
T ss_pred -HHHHhhHHHHHHHhh---cccchhehhHHHHHHHhhcccchhhh-hhhhh----hheecCCC-----------------
Confidence 166788899988887 47888999999999999888754444 22222 22333221
Q ss_pred cchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHhccc
Q 000941 326 EEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-EENVKMDVFNTFIELVRQTGNV 404 (1215)
Q Consensus 326 ~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~-e~~Vr~~~~~~l~~l~~~~~~~ 404 (1215)
| -.||+.+..++..+... .-+..+++.|.+.+++. ++.+|..++.+++.++....
T Consensus 317 --------------d--~~Ir~~~l~lL~~l~~~------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~-- 372 (526)
T PF01602_consen 317 --------------D--PSIRKKALDLLYKLANE------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP-- 372 (526)
T ss_dssp --------------S--HHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG--
T ss_pred --------------C--hhHHHHHHHHHhhcccc------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC--
Confidence 0 26899999999888763 23444566666666554 67799999999998877542
Q ss_pred CCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcch
Q 000941 405 TKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSN 484 (1215)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~ 484 (1215)
......++.+.+.+......+...++..+..++...|+. -..++..+...+.+.. .+.
T Consensus 373 -----------------~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~-~~~ 430 (526)
T PF01602_consen 373 -----------------PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDIS-SPE 430 (526)
T ss_dssp -----------------SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSS-SHH
T ss_pred -----------------chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhh-HHH
Confidence 112344556666666665667777788888887765543 2334555566666533 356
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHH
Q 000941 485 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564 (1215)
Q Consensus 485 ~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l 564 (1215)
++..++.++|........ .. ....++..+.....+....++...+.++..+...... ... .+.+.+.+
T Consensus 431 ~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~------~~~---~~~i~~~~ 498 (526)
T PF01602_consen 431 ALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE------NEV---QNEILQFL 498 (526)
T ss_dssp HHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS------TTH---HHHHHHHH
T ss_pred HHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc------hhh---HHHHHHHH
Confidence 677777777776544321 11 4566677777777666778998999888888755321 011 23555555
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHH
Q 000941 565 MSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 565 ~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
.......+.+.+||++|...++-+
T Consensus 499 ~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 499 LSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHH
Confidence 554443366899999999887643
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.7e-10 Score=127.39 Aligned_cols=395 Identities=13% Similarity=0.112 Sum_probs=277.7
Q ss_pred HHHHhccCcccchhHHHHHHHHHHhhccCh----hhHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhccCchhhHHHH
Q 000941 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSE----PRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1215)
Q Consensus 50 ~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~----~~~~~lv~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1215)
.+.+.|.|+--|=|++|+--+..+++.+-. .++.+++..|+.-.. +++...|.++.+|+..+.-.++.. ... +
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~~~-Y 81 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-DAG-Y 81 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-cHH-H
Confidence 356888999999999999999988875433 456788887877654 334445668888888776666552 223 8
Q ss_pred HHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-
Q 000941 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD- 203 (1215)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~- 203 (1215)
.+.++|.++..+.++ +..+|..||+.+..+.+-....+-.+.+.+-.++.....+++..||..| ..+..+..-+..
T Consensus 82 ~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccc
Confidence 899999999999886 5789999999999999988877778999999999999998888887654 444444332211
Q ss_pred -H---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHH
Q 000941 204 -D---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1215)
Q Consensus 204 -~---~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l 278 (1215)
+ .++.++|-+-+.+...+. ..| .++--|-.+....| ..|-.|++.+.+.++++++ |..+|+|..+-.++
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~--~tR-~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls---D~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINP--MTR-QFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS---DSSDEVRTLTDTLL 232 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCc--hHH-HHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc---CCcHHHHHHHHHHH
Confidence 1 267788877777765542 345 44455555555555 6899999999999999998 68899998887777
Q ss_pred HHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHh
Q 000941 279 ESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358 (1215)
Q Consensus 279 ~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~ 358 (1215)
..|... ++.+|..-+-+ ++....-.+ - -....-+++.|..=+..++.
T Consensus 233 ~~fL~e-------------------I~s~P~s~d~~-----~~i~vlv~~----l-----~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 233 SEFLAE-------------------IRSSPSSMDYD-----DMINVLVPH----L-----QSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHHHHH-------------------HhcCccccCcc-----cchhhcccc----c-----cCCcHHHHHHHHHHHHHHhc
Confidence 665432 11233210000 000000000 0 00002467778888888888
Q ss_pred hCchhhHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc
Q 000941 359 SRPEMLSKLYEEACPKLIDRFKEREEN-VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1215)
Q Consensus 359 ~~~~~l~~~~~~i~p~Li~~~~d~e~~-Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~ 437 (1215)
..|..+-.+++.++..++..+.+.++. .+..+...=+.+..-.+... . +. . =-+..++..+.+.+.+
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~-------~-~~--~--id~~~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER-------L-KE--E--IDYGSIIEVLTKYLSD 347 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh-------h-cc--c--cchHHHHHHHHHHhhc
Confidence 888777778888888887777777663 55433332222332222100 0 00 0 1246899999999999
Q ss_pred cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCC
Q 000941 438 KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP 502 (1215)
Q Consensus 438 ~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~ 502 (1215)
....+|.+++.-+..+-...|+.+-.|..++.+.+.+.|.|++ ..+-..++.++..++.++..
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSSSNS 410 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999999999876 57778899999999987654
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.46 E-value=1.2e-09 Score=134.08 Aligned_cols=473 Identities=15% Similarity=0.164 Sum_probs=305.7
Q ss_pred HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 000941 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA 207 (1215)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~ 207 (1215)
..+.+++.+.++ +...+.-+.-.+..+.....+ ........+...+.++++.+|..|+.+++.+. ..+..+
T Consensus 43 ~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSK--DLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAE 113 (526)
T ss_dssp THHHHHCTCSSS--SHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhh
Confidence 344445544432 344444444444333322222 23446677778889999999999999998877 677788
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
.+++.+.+.+.++++ -+|+.|+.++..+.+..|..+.+. ++|.+.+.+. |.|..++..|+.++..+ +..++
T Consensus 114 ~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~---d~~~~V~~~a~~~l~~i-~~~~~ 184 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLS---DKDPSVVSAALSLLSEI-KCNDD 184 (526)
T ss_dssp HHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTT---HSSHHHHHHHHHHHHHH-HCTHH
T ss_pred HHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhcc---CCcchhHHHHHHHHHHH-ccCcc
Confidence 889999998887764 799999999999999877654442 5666666665 56788999998888888 44444
Q ss_pred hhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHH
Q 000941 288 DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL 367 (1215)
Q Consensus 288 ~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~ 367 (1215)
.....++.++..+.+.+. +| ..|- +....+++..+....+..-..
T Consensus 185 ~~~~~~~~~~~~L~~~l~-~~--------------------------------~~~~-q~~il~~l~~~~~~~~~~~~~- 229 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLS-DP--------------------------------DPWL-QIKILRLLRRYAPMEPEDADK- 229 (526)
T ss_dssp HHTTHHHHHHHHHHHHHT-CC--------------------------------SHHH-HHHHHHHHTTSTSSSHHHHHH-
T ss_pred hhhhhHHHHHHHhhhccc-cc--------------------------------chHH-HHHHHHHHHhcccCChhhhhH-
Confidence 444667777777766653 11 1253 444445554443333322210
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHH
Q 000941 368 YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAF 447 (1215)
Q Consensus 368 ~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~ 447 (1215)
..+++.+...++...+.|+.++++++..+.. . ...+..+++.+.+.+.++++.+|..++
T Consensus 230 -~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-----------------~---~~~~~~~~~~L~~lL~s~~~nvr~~~L 288 (526)
T PF01602_consen 230 -NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP-----------------S---PELLQKAINPLIKLLSSSDPNVRYIAL 288 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----------------S---HHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHHHhhc-----------------c---hHHHHhhHHHHHHHhhcccchhehhHH
Confidence 3455555555667778888888777664421 1 124567788888888988888999999
Q ss_pred HHHHHHHHhCchhhhhhhhhhhHHHHHhhc-CCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCC-ch
Q 000941 448 SVLRELVVVLPDCLADHIGSLIPGIEKSLN-DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YY 525 (1215)
Q Consensus 448 ~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~-~~ 525 (1215)
..+..++...+..+. +... .+ ..+. +. +..+|..++..+..++.. ..+..+++.+...+.+. +.
T Consensus 289 ~~L~~l~~~~~~~v~-~~~~---~~-~~l~~~~--d~~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~ 354 (526)
T PF01602_consen 289 DSLSQLAQSNPPAVF-NQSL---IL-FFLLYDD--DPSIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDP 354 (526)
T ss_dssp HHHHHHCCHCHHHHG-THHH---HH-HHHHCSS--SHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--H
T ss_pred HHHHHhhcccchhhh-hhhh---hh-heecCCC--ChhHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccch
Confidence 999998877644333 1111 12 2333 32 367899999998888653 24677888888888443 66
Q ss_pred HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHH
Q 000941 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLP 605 (1215)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~ 605 (1215)
.++.+++..++.++....+ ....++ +.+++.+.. ....+...++..+..++...++. ...++.
T Consensus 355 ~~~~~~i~~I~~la~~~~~-------~~~~~v----~~l~~ll~~--~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~ 417 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPP-------DAEWYV----DTLLKLLEI--SGDYVSNEIINVIRDLLSNNPEL----REKILK 417 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGS-------SHHHHH----HHHHHHHHC--TGGGCHCHHHHHHHHHHHHSTTT----HHHHHH
T ss_pred hhhhhHHHHHHHHHhccCc-------hHHHHH----HHHHHhhhh--ccccccchHHHHHHHHhhcChhh----hHHHHH
Confidence 7888999999998876522 233444 444445542 23566777888888887664322 233455
Q ss_pred HHHHhh---ccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH
Q 000941 606 VLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY 682 (1215)
Q Consensus 606 ~L~~~L---~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~ 682 (1215)
.+.+.+ +++..+..+++.+|+-+.... +.. ....++..+.......+..+|...+.++..+....+.. +..
T Consensus 418 ~L~~~l~~~~~~~~~~~~~wilGEy~~~~~--~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~---~~~ 491 (526)
T PF01602_consen 418 KLIELLEDISSPEALAAAIWILGEYGELIE--NTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN---EVQ 491 (526)
T ss_dssp HHHHHHTSSSSHHHHHHHHHHHHHHCHHHT--TTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST---THH
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccCCccc--ccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch---hhH
Confidence 555444 445577889999998763210 112 56667777777777778889999999999999876541 223
Q ss_pred HHHHHHhhhhcC--CCChhhHHHHHHHHHHH
Q 000941 683 EVIIVELSTLIS--DSDLHMTALALELCCTL 711 (1215)
Q Consensus 683 ~~~l~~l~~~l~--~~d~~~~~~al~~l~~l 711 (1215)
+.+++.+..+.+ +.|..+++-|...+.-+
T Consensus 492 ~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 467777777777 77888888887766544
No 25
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=3.2e-07 Score=111.08 Aligned_cols=704 Identities=15% Similarity=0.187 Sum_probs=366.2
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCCh--HHHHHHHHHHHHhccCccc-chhHHHHHHHHHH---hhccCh
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDDVAG-DVSGLAVKCLAPL---VKKVSE 79 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~i~~~ll~~L~D~~~-~Vq~~A~~~l~~l---~~~~~~ 79 (1215)
+-.++...-+.-|-+|-||..-+++.|..+.+-.+. .....+....++.++...+ .-.....+.|.-| ....|.
T Consensus 140 ~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~ 219 (1176)
T KOG1248|consen 140 LFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR 219 (1176)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH
Confidence 445666677888999999999999999987765543 2223344445555554332 2333333333322 223333
Q ss_pred hhHHHHHHHHHHHhc----CCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLL----NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~----~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1215)
++++.||..+. ..+..++-.+..++..++...+. .+.......++..+.+.--+.+ +.-....=+.++..
T Consensus 220 ----~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~-~l~a~~~a~lL~al~~l~ps~~-D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 220 ----PLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT-ALAAELNARLLTALMTLSPSEN-DDLLTVAWLKVLNE 293 (1176)
T ss_pred ----HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhCCCcc-chHHHHHHHHHHHH
Confidence 45555555443 33333455556666666665554 2222223333333222111111 22222222333333
Q ss_pred HHHHhhhh----hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 000941 156 VLHKFGNL----MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNI 231 (1215)
Q Consensus 156 l~~~~g~~----l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i 231 (1215)
...++... -....+.+.+.++..+.++...+-..|-+++..+..-+.. +.+.+-...+..+.+-.. ...-+.++
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf-~~~~~~il 371 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF-HAVWRFIL 371 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH-HHHHHHHH
Confidence 33332211 1134577777777777776666656666666665543332 111111111222222221 24556889
Q ss_pred HHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh-hcccHH-------------HHH
Q 000941 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCD-------------EIL 297 (1215)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~-~~~~l~-------------~ii 297 (1215)
|.+..+.+.||...+||+...+..+-..-. .+|..-+-..-+++++.+...+.+ +-..+| =++
T Consensus 372 qi~s~~fek~G~~s~~~l~~~L~~l~~lr~---~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLL 448 (1176)
T KOG1248|consen 372 QILSALFEKCGELSGPELTKTLEGLCDLRA---SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLL 448 (1176)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHhhc---CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhH
Confidence 999999999999999998888777654322 122222223344555555544321 000000 011
Q ss_pred HHHHHHhccCCCCCCCCCCCccc--ccccccc-hhhhcCCCCCCCCccHHHH---HHHHHHHHHH--HhhCchhhHHHHH
Q 000941 298 HLTLEYLSYDPNFTDNMEEDSDD--EAYEEEE-EDESANEYTDDEDASWKVR---RAAAKCLAAL--IVSRPEMLSKLYE 369 (1215)
Q Consensus 298 ~~~l~~l~~dpn~~~~~d~d~~~--~~~~~~~-d~~~~~~~~dd~d~swkvR---~~Aa~~L~~l--i~~~~~~l~~~~~ 369 (1215)
|++-.++..-+ ....-+ .- +.. ... -..+ . -+.+. .++ -..-+.++-+ ...+|--+..-|.
T Consensus 449 PvLR~~i~~A~-La~F~~---~ivpla~-sl~~K~~~---l-~~~~~--~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~ 517 (1176)
T KOG1248|consen 449 PVLRDYIIGAS-LAFFTE---YIVPLAM-SLQLKAKK---L-KEAGS--QVSLYDTLVDQLWSLLPGFCNYPVDLAESFT 517 (1176)
T ss_pred HHHHHhhccCc-HHHHHH---HHHHHHH-HHHHHHHh---h-hhccC--cHHHHHHHHHHHHHhChhhhCCCccHHHHHH
Confidence 22222111000 000000 00 000 000 0000 0 00000 011 1111111100 1123433444566
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChh------hH
Q 000941 370 EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK------TK 443 (1215)
Q Consensus 370 ~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~------~r 443 (1215)
.+.|.|...+..+. +.|..++.+|..++++-.+.. ++ ......+.++-...++.++...+..... .|
T Consensus 518 ~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~----~a--~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~ 590 (1176)
T KOG1248|consen 518 DLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSS----DA--AENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASR 590 (1176)
T ss_pred HHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcc----hH--HHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHH
Confidence 77788877777665 889999999999998632100 00 0011233444455555555555443322 33
Q ss_pred HHHHHHHH-HHHHhCchhhhhhhhhhhHHHHHhhcCCCCc------chhHHHHHHHHHHHhccCCCCcchhhhhhhHHHH
Q 000941 444 VGAFSVLR-ELVVVLPDCLADHIGSLIPGIEKSLNDKSST------SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPV 516 (1215)
Q Consensus 444 ~~~~~~l~-~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~------~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l 516 (1215)
...+.... ...+..|. ++...+...+++.... +.....-+..+..+....... ++..+. .+
T Consensus 591 ~~~L~~i~~~~~~~t~~-------dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~----~vs~l~-~v 658 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPT-------DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES----QVSKLF-TV 658 (1176)
T ss_pred HHHHHHHHHHHhhcccH-------HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch----hHHHHH-Hh
Confidence 33333332 22222222 2222233332222111 112222333333333332222 333443 33
Q ss_pred HHHhc-CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCc
Q 000941 517 LAAVG-ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDN 595 (1215)
Q Consensus 517 ~~~l~-d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~ 595 (1215)
..... ....+++..+..++..++.. +.. ......++..++..+.+.++ +.+...|..++.|+..+..-.+.+
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~--~s~---~~~~~q~i~~I~n~L~ds~q--s~~~~~~~~rl~~L~~L~~~~~~e 731 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS--PSG---EGLVEQRIDDIFNSLLDSFQ--SSSSPAQASRLKCLKRLLKLLSAE 731 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC--Cch---hhHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccHH
Confidence 33333 33668999999999999865 211 11234667778887777665 446678888999999999877744
Q ss_pred ccchhhhhHHHHHHhhc--cchhHHHHHHHHHHHH--cCCCCC---chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000941 596 LGAELPACLPVLVDRMG--NEITRLTAVKAFAVIA--ASPLHI---DLTCVLEHVIAELTAFLRKANRALRQATLGTMNS 668 (1215)
Q Consensus 596 l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~--~s~~~~---~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 668 (1215)
....++..+|-++=.++ |+..|.+|..+|-.|+ .+.+.. .-...++..+..+...+.......+..++.+++.
T Consensus 732 ~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 732 HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITH 811 (1176)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 44555555654433333 4457888888777766 322110 1133667777777776654444445555899999
Q ss_pred HHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch-hhhhhhhhHHHHHHHhhhcccchhhh
Q 000941 669 LVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALALIKSSLLQGQAL 747 (1215)
Q Consensus 669 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ll~s~~l~~~~l 747 (1215)
++...+..++..++..+++.++.+|..+.++++..|..++..++.. .|.. ...+.++++|.++.+.+... ....
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~---~pe~~l~~~~~~LL~sll~ls~d~k--~~~r 886 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK---FPEECLSPHLEELLPSLLALSHDHK--IKVR 886 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc---CCHHHHhhhHHHHHHHHHHHHHhhh--HHHH
Confidence 9999988899899999999999999999999999999999999984 6653 33466778888888775432 2223
Q ss_pred HHHHHHHHHHHhhcC
Q 000941 748 VALQSFFAALVYSAN 762 (1215)
Q Consensus 748 ~~l~~~~~~l~~~~~ 762 (1215)
..+-.+++.+++..+
T Consensus 887 ~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456677777777653
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-06 Score=104.41 Aligned_cols=610 Identities=14% Similarity=0.165 Sum_probs=342.5
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc-c-chhHHHHHHHHHHhhc--
Q 000941 1 MANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA-G-DVSGLAVKCLAPLVKK-- 76 (1215)
Q Consensus 1 ~~~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~-~-~Vq~~A~~~l~~l~~~-- 76 (1215)
|....+..++...-++||+.|-.|-..|++. + ....++..+++...|.+ + .||..|+--+...+.+
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~-~---------K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W 70 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQL-E---------KQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSW 70 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHh-h---------cCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcC
Confidence 5566788889999999999999998888432 2 23466777777666543 4 4688888777777642
Q ss_pred -----------cChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc-cCchhhHHHHHHhHhHHHHhhhhccCCChh
Q 000941 77 -----------VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTE 144 (1215)
Q Consensus 77 -----------~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~ 144 (1215)
++++.=.-+.+.++..+.....-.|..-..+|++++.+ .| ..+..++|..-..|+++ +..
T Consensus 71 ~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p------~~Wp~l~d~i~~~Lqs~--~~~ 142 (1010)
T KOG1991|consen 71 SSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP------EQWPGLLDKIKNLLQSQ--DAN 142 (1010)
T ss_pred CccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc------ccchhHHHHHHHHhcCc--chh
Confidence 22223345566777777666666788788888888863 33 24667777877778775 467
Q ss_pred HHHHHHHHHHHHHHHhh-----------hhhhhhHHHHHHHHhhhhcCChH---HHHHHHHHHHHHHHhh-cCHH-----
Q 000941 145 IRCECLDILCDVLHKFG-----------NLMSNDHERLLSALLPQLSANQA---SVRKKSVSCIASLASS-LSDD----- 204 (1215)
Q Consensus 145 v~~~al~~L~~l~~~~g-----------~~l~~~~~~ll~~ll~~l~~~~~---~vrk~a~~~l~~l~~~-~~~~----- 204 (1215)
.-.+++-+|..+.+.+. ..+....|.+++.+...+..++- .+.|-.++.+-.+.-+ +|..
T Consensus 143 ~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~ 222 (1010)
T KOG1991|consen 143 HVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPE 222 (1010)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCch
Confidence 78889999999988764 34555677777777777766543 4566666655544433 3443
Q ss_pred HHHHHHHHHHHHhhcCCC------Ch---------HHHHHHHHHHHHHHhhhhh---------hhcc-----chhhhHHH
Q 000941 205 LLAKATIEVVRNLRSKGA------KP---------EMIRTNIQMVGALSRAVGY---------RFGP-----HLGDTVPV 255 (1215)
Q Consensus 205 ~~~~l~~~ll~~l~~~~~------~~---------~~~~~~i~~l~~l~~~~~~---------~~~~-----~l~~iip~ 255 (1215)
.|..-|.-.+..+..+-. ++ ..++=++..+..+...-|. .|.. |.+.|...
T Consensus 223 ~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~ 302 (1010)
T KOG1991|consen 223 TFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEV 302 (1010)
T ss_pred hHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 255556555555544311 11 2334466666666665431 2222 23334444
Q ss_pred HHHhhcccCC---CcHHHHHHHHHHHHHHHH--hChhhhcccHHHHHH-HHHHHhccCCCCCCCCCCCcccccccccc-h
Q 000941 256 LIDYCTSASE---NDEELREYSLQALESFLL--RCPRDISSYCDEILH-LTLEYLSYDPNFTDNMEEDSDDEAYEEEE-E 328 (1215)
Q Consensus 256 ll~~~~~~~~---~d~elre~al~~l~~l~~--~~~~~~~~~l~~ii~-~~l~~l~~dpn~~~~~d~d~~~~~~~~~~-d 328 (1215)
+++.+..-.. -.+++--.+++.++..+. ..++.+.||+..++. .+...+++..+ |++ .-|+| +
T Consensus 303 ~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~-----dee-----lwe~DP~ 372 (1010)
T KOG1991|consen 303 FLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDE-----DEE-----LWEEDPY 372 (1010)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcc-----cHH-----HHhcCHH
Confidence 4443321101 123333344444444433 234578899988775 45566654311 110 00000 0
Q ss_pred hhh---cCCCCCCCCccHHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHHHHhhhc--ccchhHH--HHHHHHHHHHHHH
Q 000941 329 DES---ANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPKLIDRFK--EREENVK--MDVFNTFIELVRQ 400 (1215)
Q Consensus 329 ~~~---~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~~~l~~~~~~i~p~Li~~~~--d~e~~Vr--~~~~~~l~~l~~~ 400 (1215)
++. .|-++| -. .=+-||..++-.+...+ ++.+..+.+-+...+.+.-. ..+.+-| ..++..++++.+.
T Consensus 373 EYiR~~~Di~ed--~~--sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~ 448 (1010)
T KOG1991|consen 373 EYIRKKFDIFED--GY--SPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASI 448 (1010)
T ss_pred HHHHhcCchhcc--cC--CCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHH
Confidence 000 011111 11 22558888888888888 67777766666666542221 2233333 5678888888765
Q ss_pred hcccCCCcCCCCCCChhhHHHHHHHH-HHHHHHHHhcccChhhHHHHHHHHHHHHHh-CchhhhhhhhhhhHHHHHhhcC
Q 000941 401 TGNVTKGQIDNNELNPRWLLKQEVSK-IVKSINRQLREKSIKTKVGAFSVLRELVVV-LPDCLADHIGSLIPGIEKSLND 478 (1215)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~p~-i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~-~~~~l~~~~~~lv~~l~~~l~d 478 (1215)
.... .| +.+++.. +++.+...++++.--.|..|+.+++.+++. ++. ...+..++....++|.+
T Consensus 449 L~K~----------s~---~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~ 513 (1010)
T KOG1991|consen 449 LLKK----------SP---YKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN 513 (1010)
T ss_pred HccC----------Cc---hHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc
Confidence 4311 12 2333322 335555666777666788899999999843 221 12566677778888885
Q ss_pred CCCcchhHHHHHHHHHHHhccCCC--CcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhc
Q 000941 479 KSSTSNLKIEALTFTRLVLSSHSP--PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPY 556 (1215)
Q Consensus 479 ~~~~~~~~~~al~~l~~l~~~~~~--~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 556 (1215)
.+ .-.+|++|.-++..++.+... +.+.+|++.++..++...++-...... .+++.++..+ ++.+.||
T Consensus 514 d~-~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~f-------seElsPf 582 (1010)
T KOG1991|consen 514 DN-ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKF-------SEELSPF 582 (1010)
T ss_pred CC-cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHH-------HHhhchh
Confidence 33 357999999999999987642 246788888888888877654333222 3445555554 3345665
Q ss_pred HHHHHH----HHHHHhhc-cCCCHHHHHHHHHHHHHH------HHhcc---CcccchhhhhHHHHHHhhccchhHHHHHH
Q 000941 557 VQPIYN----AIMSRLTN-QDQDQEVKECAISCMGLV------ISTFG---DNLGAELPACLPVLVDRMGNEITRLTAVK 622 (1215)
Q Consensus 557 l~~l~~----~l~~~l~~-~d~~~~Vr~~Ai~~lg~l------~~~~~---~~l~~~~~~~l~~L~~~L~~e~~r~~a~~ 622 (1215)
..++.+ .+.+.+.+ .+.+...-.+|+.|+|.+ +.... +.+...-+.++|++.-.|+++.+- ..+
T Consensus 583 A~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~d--fye 660 (1010)
T KOG1991|consen 583 AVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITD--FYE 660 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHH--HHH
Confidence 554444 34444543 333455556677777753 22221 222333445555555555554321 111
Q ss_pred HHHHHHcCCC--CCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000941 623 AFAVIAASPL--HIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLV 670 (1215)
Q Consensus 623 al~~i~~s~~--~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 670 (1215)
-+-.++.+.+ ..+++|..=++++.+...+++..-..-...+-+|...+
T Consensus 661 E~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 661 ELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence 1122221110 11345555556666666666555444444444444433
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=99.40 E-value=1.3e-08 Score=123.91 Aligned_cols=466 Identities=13% Similarity=0.158 Sum_probs=282.2
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
..++..+.+.|..+|.|.-.-|.++.. ..++..--+++.+.+-++|+|+.||..|+++++.+-. +..++.++
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~ 142 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTL 142 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHH
Confidence 344455677777777776655555432 3445556788999999999999999999999987642 34566777
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1215)
..+...+.+.++-+|..|++|+..+....|. ... -..+++.|.+.+.+. ++.|...|+-+|.++.+..+..+..
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~--~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l 216 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFY--QQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIES 216 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--ccc--ccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHH
Confidence 7888888888899999999999998765442 110 123556666666654 6899999999999998776554432
Q ss_pred hHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh-
Q 000941 167 DHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSD--DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG- 242 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~- 242 (1215)
.++. +..++..+.+ ..| -+ +..|..+..+.++ .....++..+...+++.+. .+.-.++.++-.+.....
T Consensus 217 ~~~~-~~~Ll~~L~e~~EW-~Q---i~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~--AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 217 SNEW-VNRLVYHLPECNEW-GQ---LYILELLAAQRPSDKESAETLLTRVLPRMSHQNP--AVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred HHHH-HHHHHHHhhcCChH-HH---HHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcCcCCH
Confidence 2222 2334444432 233 22 2444445555442 2355677888888877653 455455555554443221
Q ss_pred hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhcc-CCCCCCCCCCCcccc
Q 000941 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY-DPNFTDNMEEDSDDE 321 (1215)
Q Consensus 243 ~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~-dpn~~~~~d~d~~~~ 321 (1215)
..+...+..+.+.++... ..+.++|-.++..+..++..+|..|.+++... |+.| ||
T Consensus 290 ~~~~~~~~rl~~pLv~L~----ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F------f~~~~Dp------------- 346 (746)
T PTZ00429 290 ELIERCTVRVNTALLTLS----RRDAETQYIVCKNIHALLVIFPNLLRTNLDSF------YVRYSDP------------- 346 (746)
T ss_pred HHHHHHHHHHHHHHHHhh----CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhh------hcccCCc-------------
Confidence 112222333444444433 25688999999999999998886665543221 1222 11
Q ss_pred cccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHh
Q 000941 322 AYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQT 401 (1215)
Q Consensus 322 ~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~ 401 (1215)
..||......|..+... +.+.. ++.-|.+...+.+.+.+..++++++.+....
T Consensus 347 ---------------------~yIK~~KLeIL~~Lane--~Nv~~----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 347 ---------------------PFVKLEKLRLLLKLVTP--SVAPE----ILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred ---------------------HHHHHHHHHHHHHHcCc--ccHHH----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 25788888888777642 22333 3333434446777788888999988886532
Q ss_pred cccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhh-cCCC
Q 000941 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSL-NDKS 480 (1215)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l-~d~~ 480 (1215)
......++..+.+.+..+.. ....++.++..+....|.. + +++.+...+ .+.-
T Consensus 400 -------------------~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i 453 (746)
T PTZ00429 400 -------------------DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEV 453 (746)
T ss_pred -------------------hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH---H---HHHHHHHhhccccc
Confidence 23345666666666655433 3445778888888776653 1 334443322 1122
Q ss_pred CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHH
Q 000941 481 STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1215)
Q Consensus 481 ~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1215)
..+..|...+..+|.+.... +..+.++..++..+.+....|+...+.++..+.-.. .+..+.+
T Consensus 454 ~e~~AKaaiiWILGEy~~~I------~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-----------p~~~~~~ 516 (746)
T PTZ00429 454 VEEEAKVSLLWMLGEYCDFI------ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-----------PQGMEPQ 516 (746)
T ss_pred ccHHHHHHHHHHHHhhHhhH------hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-----------cHHHHHH
Confidence 23556666666677654321 112334433444444555678777777666655321 1224556
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHH
Q 000941 561 YNAIMSRLTNQDQDQEVKECAISCMG 586 (1215)
Q Consensus 561 ~~~l~~~l~~~d~~~~Vr~~Ai~~lg 586 (1215)
+..++..+...+.+++||.+|..-..
T Consensus 517 l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 517 LNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 66666666555668999999987554
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.9e-09 Score=117.77 Aligned_cols=389 Identities=16% Similarity=0.217 Sum_probs=262.5
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhH
Q 000941 178 QLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTV 253 (1215)
Q Consensus 178 ~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~ii 253 (1215)
.+.|.--.-||.|..-+..++.-+-. +.+..+++.+....-.+.. ...|+..+-.+.+++-+.|.+-.+|+..++
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~-~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPH-ANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcc-cccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 34444446677777777766653321 1356666666655543332 245678888888888888888788999999
Q ss_pred HHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcC
Q 000941 254 PVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1215)
Q Consensus 254 p~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~ 333 (1215)
|.++.++. |.|..+|-+|.+++-.++..+..++-+|.+.++..+.+... |+.
T Consensus 87 ~Pv~~cf~---D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd------------------------ 138 (675)
T KOG0212|consen 87 PPVLNCFS---DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSD------------------------ 138 (675)
T ss_pred HHHHHhcc---CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCc------------------------
Confidence 99999998 67888999999999999999999999999999999988764 110
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhhCch--hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCC
Q 000941 334 EYTDDEDASWKVRRAAAKCLAALIVSRPE--MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411 (1215)
Q Consensus 334 ~~~dd~d~swkvR~~Aa~~L~~li~~~~~--~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~ 411 (1215)
..|| .++.++..++..... .-.-.++.++|.|-.|+..-++.+|.-.+.-+.. +...
T Consensus 139 ---------~~V~-~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~-Lds~---------- 197 (675)
T KOG0212|consen 139 ---------QNVR-GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYV-LDSV---------- 197 (675)
T ss_pred ---------cccc-cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HhcC----------
Confidence 0112 345566666654321 0022466788998888877789999876544333 3322
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC---chhhhhhhhhhhHHHHHhhcCCCCcchhHHH
Q 000941 412 NELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL---PDCLADHIGSLIPGIEKSLNDKSSTSNLKIE 488 (1215)
Q Consensus 412 ~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~---~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~ 488 (1215)
|.-.+-.++|.++..+++.|.|++..+|..+=.+++++.... |..+ ..++.++.+..-+..+. +.++..
T Consensus 198 ----P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~--~~iq~~ 269 (675)
T KOG0212|consen 198 ----PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSSE--PEIQLK 269 (675)
T ss_pred ----CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCCc--HHHHHH
Confidence 222567899999999999999999999987777777765543 3222 44555666665555433 567777
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchH-HHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHH
Q 000941 489 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYK-VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1215)
Q Consensus 489 al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~-v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 567 (1215)
|+.-+..+++.. +..+-+|...++..++.++.+...+ +...+..+-+.+.+-+........-+ +..++..+..-
T Consensus 270 al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id----~~~ii~vl~~~ 344 (675)
T KOG0212|consen 270 ALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID----YGSIIEVLTKY 344 (675)
T ss_pred HHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc----hHHHHHHHHHH
Confidence 888888888764 4677789999999999999876553 44444444444444333322111112 23455555554
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcCC
Q 000941 568 LTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASP 631 (1215)
Q Consensus 568 l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~ 631 (1215)
+. +...+-|-.++.-+-.+-...+..+..+...+++.|+..|++. .+-.-++..+..|+.++
T Consensus 345 l~--~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 345 LS--DDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred hh--cchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 54 3345566666666666666666677778899999999999775 35667788888888664
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.8e-07 Score=108.96 Aligned_cols=602 Identities=15% Similarity=0.123 Sum_probs=342.3
Q ss_pred HHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCccc---c-----hhHHHHHHHHHHhhccChhh
Q 000941 10 LEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAG---D-----VSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 10 l~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~---~-----Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
|.-|...+..++--++.-|...+.+..-.++.....+++..+...--+.|. . |-+-|..|++.+=....-..
T Consensus 230 L~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~ 309 (1176)
T KOG1248|consen 230 LNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQA 309 (1176)
T ss_pred HhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 334566677777777777777777655555656666666666544333332 2 22334444443332222344
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000941 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1215)
Q Consensus 82 ~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1215)
++.+.+..++...++.++.-..+...++.++++... +....|... +-..+... -..+-..++.++..+.+.+|
T Consensus 310 ~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~--~~~~~c~~~---~~~~l~~k--f~~~~~~ilqi~s~~fek~G 382 (1176)
T KOG1248|consen 310 LPRLFSLFFTILESLIEELVQAASQSLKEILKESVT--VIDALCSKQ---LHSLLDYK--FHAVWRFILQILSALFEKCG 382 (1176)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc--ccHHHHHHH---HHHHHcch--HHHHHHHHHHHHHHHHHHhh
Confidence 556666666755567777777888888888887664 333344442 22222221 24566778889999999999
Q ss_pred hhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH----------------------------------
Q 000941 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA---------------------------------- 207 (1215)
Q Consensus 162 ~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~---------------------------------- 207 (1215)
+.-.++.-..++.+...-.+++..-+-.-=.|+|+.+.++|.+.+-
T Consensus 383 ~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~ 462 (1176)
T KOG1248|consen 383 ELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAF 462 (1176)
T ss_pred hhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHH
Confidence 9666666666666554333333222222333444444444443211
Q ss_pred ---HHHHHHH------HHhhcCCCChHHH-HHHHHHHHHHHhhh--hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 208 ---KATIEVV------RNLRSKGAKPEMI-RTNIQMVGALSRAV--GYRFGPHLGDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 208 ---~l~~~ll------~~l~~~~~~~~~~-~~~i~~l~~l~~~~--~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
.++|... ..+..++...... -...|.|+-+-.-| |..+...++.+.|.+...+. ..+++|....
T Consensus 463 F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~----~~~elr~~Ic 538 (1176)
T KOG1248|consen 463 FTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALL----KRPELRETIC 538 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHh----cchHhHHHHH
Confidence 1111111 1111122111111 22346666555544 33444457778888888886 3469999999
Q ss_pred HHHHHHHHhCh---------hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHH
Q 000941 276 QALESFLLRCP---------RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1215)
Q Consensus 276 ~~l~~l~~~~~---------~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR 346 (1215)
.+|..++..+. +.+..|-...++.+..+-+.-|+-.. | .-+.|
T Consensus 539 ~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~----------------------~------~l~~~ 590 (1176)
T KOG1248|consen 539 NSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR----------------------K------ILASR 590 (1176)
T ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc----------------------c------cHHHH
Confidence 99999999861 12333444445555444322221000 0 01334
Q ss_pred HHHHHHHH-HHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHH
Q 000941 347 RAAAKCLA-ALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVS 425 (1215)
Q Consensus 347 ~~Aa~~L~-~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p 425 (1215)
+.-..... ..+...|..+. ..+...+.....+.++.++.-....+..++..++.+. + ..++.
T Consensus 591 ~~~L~~i~~~~~~~t~~dv~---~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~----------~----e~~vs 653 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPTDVV---GSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ----------T----ESQVS 653 (1176)
T ss_pred HHHHHHHHHHHhhcccHHHH---HHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc----------c----chhHH
Confidence 44333333 22222332111 1111122222244456666544434444444433210 0 12233
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch--hhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCC
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD--CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPP 503 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~--~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~ 503 (1215)
.+........+..+..++.-++.+|.++....++ ....++..+...+...+++.. ...+...+.++..+++.|+ .
T Consensus 654 ~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~--~~~~~~rl~~L~~L~~~~~-~ 730 (1176)
T KOG1248|consen 654 KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS--SPAQASRLKCLKRLLKLLS-A 730 (1176)
T ss_pred HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHhcc-H
Confidence 3332222222333567888899999999887222 234577777777777776543 4678889999999999886 3
Q ss_pred cchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHH--hccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHH
Q 000941 504 VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR--VLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1215)
Q Consensus 504 ~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~--~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~A 581 (1215)
....++++.+|.++-.+++.+..-+..|+.++..+.. ...... .+.-...++..+..+...+. .+ ...++...
T Consensus 731 e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g---~e~~~~~lnefl~~Isagl~-gd-~~~~~as~ 805 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG---NEPASAILNEFLSIISAGLV-GD-STRVVASD 805 (1176)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc---ccchHHHHHHHHHHHHhhhc-cc-HHHHHHHH
Confidence 3445788888888888877777788888888887772 221111 00001133333333333332 12 34455555
Q ss_pred HHHHHHHHHhccCcccc-hhhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHH
Q 000941 582 ISCMGLVISTFGDNLGA-ELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRAL 658 (1215)
Q Consensus 582 i~~lg~l~~~~~~~l~~-~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~l 658 (1215)
|.+++.++..++..+.. ++..++..+.-.|.. ...+.+|++.+..++..-...-+.++++.+++.+...+....+.+
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 89999999888776664 788888888777743 457788888888877542122357889999999999888888999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 000941 659 RQATLGTMNSLVVAYGD 675 (1215)
Q Consensus 659 r~~al~~L~~l~~~~~~ 675 (1215)
|...-..+..++..+|.
T Consensus 886 r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHHHHHhCH
Confidence 99999999999998875
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.33 E-value=2.1e-07 Score=113.65 Aligned_cols=283 Identities=11% Similarity=0.146 Sum_probs=179.1
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHH
Q 000941 370 EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSV 449 (1215)
Q Consensus 370 ~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~ 449 (1215)
.++..+..+++.+++.|..++++++..+..... + ......+..+.+.+... ..+++.+|-.++..
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-------------~-~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-------------Q-ELIERCTVRVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-------------H-HHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 344455556678889999998888776643210 1 11222222233333333 44556789889988
Q ss_pred HHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHH
Q 000941 450 LRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTA 529 (1215)
Q Consensus 450 l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~ 529 (1215)
+..++...|..|.+|+..+. -..+|+ ..+|...+..+..++... .+..|+..+..++.+.+..++.
T Consensus 321 I~~i~~~~P~lf~~~~~~Ff----~~~~Dp---~yIK~~KLeIL~~Lane~-------Nv~~IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 321 IHALLVIFPNLLRTNLDSFY----VRYSDP---PFVKLEKLRLLLKLVTPS-------VAPEILKELAEYASGVDMVFVV 386 (746)
T ss_pred HHHHHHHCHHHHHHHHHhhh----cccCCc---HHHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHhhcCCHHHHH
Confidence 88888887777776654332 233443 458888999888886532 3677888888888888889999
Q ss_pred HHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHH
Q 000941 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 609 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~ 609 (1215)
+++.+++.++.. +......++..+++.+... .++...++.++-.++...+.. ..++.+++
T Consensus 387 ~aIrAIg~lA~k-----------~~~~a~~cV~~Ll~ll~~~---~~~v~e~i~vik~IlrkyP~~------~il~~L~~ 446 (746)
T PTZ00429 387 EVVRAIASLAIK-----------VDSVAPDCANLLLQIVDRR---PELLPQVVTAAKDIVRKYPEL------LMLDTLVT 446 (746)
T ss_pred HHHHHHHHHHHh-----------ChHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHCccH------HHHHHHHH
Confidence 999999998754 3344566666666666532 234456788888887765432 13444443
Q ss_pred -----hhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Q 000941 610 -----RMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEV 684 (1215)
Q Consensus 610 -----~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~ 684 (1215)
.+.++..|.+.+|.+|+.+.. -+..+.++..+..-....+..+|.+.+.+..++....+. ..+.
T Consensus 447 ~~~~~~i~e~~AKaaiiWILGEy~~~------I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-----~~~~ 515 (746)
T PTZ00429 447 DYGADEVVEEEAKVSLLWMLGEYCDF------IENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-----GMEP 515 (746)
T ss_pred hhcccccccHHHHHHHHHHHHhhHhh------HhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-----HHHH
Confidence 344556777779999987632 111334444443333456778999999999998876653 2344
Q ss_pred HHHHhhhhc-C-CCChhhHHHHHHHHHHHh
Q 000941 685 IIVELSTLI-S-DSDLHMTALALELCCTLM 712 (1215)
Q Consensus 685 ~l~~l~~~l-~-~~d~~~~~~al~~l~~l~ 712 (1215)
++..+.... + +.|+.+|.-|+..+.-+.
T Consensus 516 ~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 516 QLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 455544333 3 467788888887776554
No 31
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-08 Score=122.18 Aligned_cols=560 Identities=17% Similarity=0.194 Sum_probs=330.6
Q ss_pred HHHHHHHHHhhccChh-hHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCCh
Q 000941 65 LAVKCLAPLVKKVSEP-RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNT 143 (1215)
Q Consensus 65 ~A~~~l~~l~~~~~~~-~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~ 143 (1215)
.+.+-+..+....++. .-.++++.+.... ....++...++..+++++.... +..+...+.|.+....... ..
T Consensus 101 ~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~----~~~~~~~ll~~le~l~~~e--et 173 (759)
T KOG0211|consen 101 NSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG----GPEYAHMLLPPLELLATVE--ET 173 (759)
T ss_pred hhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc----chhHHHHhhHHHHhhhHHH--HH
Confidence 4444444444333332 2457777777766 5555667777777776665432 2345556667666555543 47
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCC
Q 000941 144 EIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAK 223 (1215)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~ 223 (1215)
.||..+++.+..++....+.-. +..+.+.+...-.++...-|-.++..++......+++....-...+.+.+-+...
T Consensus 174 ~vr~k~ve~l~~v~~~~~~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~- 250 (759)
T KOG0211|consen 174 GVREKAVESLLKVAVGLPKEKL--REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDT- 250 (759)
T ss_pred HHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccc-
Confidence 8899999988888776665432 3333333333333322245667778888888777755443333334444433222
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHH
Q 000941 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1215)
+.+|+++-+-+|.++...+.. .--..++|...+... |+.+-+|+.+..++..+........ +....+.+.
T Consensus 251 ~~Vr~~~a~~l~~~a~~~~~~--~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~---- 320 (759)
T KOG0211|consen 251 PMVRRAVASNLGNIAKVLESE--IVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTES---- 320 (759)
T ss_pred hhhHHHHHhhhHHHHHHHHHH--HHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHH----
Confidence 468888888899999888752 122445555555554 5677899999888776654433111 000111111
Q ss_pred hccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccc
Q 000941 304 LSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE 383 (1215)
Q Consensus 304 l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e 383 (1215)
-..+.+|.+|.+|...+.....+...... ........+.....+++.+
T Consensus 321 ------------------------------l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 321 ------------------------------LVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred ------------------------------HHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchh
Confidence 11234577899999888777666554432 1111122334445568888
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD 463 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~ 463 (1215)
+++|.++..-...+...... .+ ...-....+++.+.....+.+..+|.+.......+....| ...
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~-----------~~--~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ 433 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNA-----------SC--YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KER 433 (759)
T ss_pred hhhhHHhhcchHHHhhhcCc-----------cc--ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCc
Confidence 99998876554444433210 00 0011123445666667777777777665544444433333 334
Q ss_pred hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000941 464 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR 543 (1215)
Q Consensus 464 ~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1215)
-+..+.|.....++|.. +.++......+..+....+.....-+-+..+|.+.....|..++++.+.+..+-.++...+
T Consensus 434 ti~~llp~~~~~l~de~--~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TISELLPLLIGNLKDED--PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred CccccChhhhhhcchhh--HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Confidence 66677777777777654 5666665545455444444444555778899999888888888999888888877776543
Q ss_pred CCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc--hhHHHHH
Q 000941 544 PSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAV 621 (1215)
Q Consensus 544 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e--~~r~~a~ 621 (1215)
- ..+.+.+..+ +..-+ .|...++|++|...+-.++..+|... ......|.++....+. -.|.+.+
T Consensus 512 ~------~~~~~~~~~l---~~~~l--~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 512 V------EFFDEKLAEL---LRTWL--PDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred h------HHhhHHHHHH---HHhhh--hhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHH
Confidence 1 1122222222 22222 35568999999999999999998422 4555666666554442 3566666
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH-hhhhcCCCChhh
Q 000941 622 KAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVE-LSTLISDSDLHM 700 (1215)
Q Consensus 622 ~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~-l~~~l~~~d~~~ 700 (1215)
.++..++.-- +. +-+...++|.+..+..+....+|-.++..+..+...... +..+..+.. +..+.+++|..+
T Consensus 579 ~si~~la~v~-g~--ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dv 651 (759)
T KOG0211|consen 579 FSIHELAEVL-GQ--EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDV 651 (759)
T ss_pred HHHHHHHHHh-cc--HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccch
Confidence 6666665321 10 345567888888888888889999999999988765443 333333333 334445778877
Q ss_pred HHHHHHHHHHHhh
Q 000941 701 TALALELCCTLMA 713 (1215)
Q Consensus 701 ~~~al~~l~~l~~ 713 (1215)
+-.+..+.+.+..
T Consensus 652 r~~a~~a~~~i~l 664 (759)
T KOG0211|consen 652 RYRAILAFGSIEL 664 (759)
T ss_pred hHHHHHHHHHHHH
Confidence 7777766666544
No 32
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.7e-07 Score=109.19 Aligned_cols=628 Identities=16% Similarity=0.170 Sum_probs=329.5
Q ss_pred CCCcchhhhhHHHHHHHhcccc-CC-CCh-----HH--HHHHHHHHHHhccCcccchhHHHHHHHHHHhhc--cChhhHH
Q 000941 15 GKDKDFRYMATSDLLNELNKES-FK-ADA-----DL--EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKK--VSEPRVV 83 (1215)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~-~~-~~~-----~~--~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~--~~~~~~~ 83 (1215)
..|...||+-+.=|--.+..+- ++ +|+ .. ..+|.......+. .++-.|..|.-+++.+..+ +.. .+.
T Consensus 136 ~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~-~~~~~r~~aalllsk~~sR~D~~~-~~~ 213 (1133)
T KOG1943|consen 136 FSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLI-SSGILRRSAALLLSKLFSRTDVKD-LLL 213 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHcccccHHH-HHH
Confidence 4566778888776655555431 22 333 22 3444444433333 3347888999999988743 222 233
Q ss_pred HHHHHHHHHhcCCCcc--hhhHHHHHHHHHHhccCch-------------------hhHHHHHHhHhHHHHhhhh-----
Q 000941 84 EMTDKLCIKLLNGKDQ--HRDIASIALKTIIAEVTTS-------------------SLAQSIHTSLTPQLTKGIT----- 137 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~--~r~~a~~aL~~~i~~~~~~-------------------~~~~~~~~~l~p~L~~~l~----- 137 (1215)
..++.++..-...... ...+-..++-.+.+..+.. .-.....+++.+++++.+.
T Consensus 214 ~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~ 293 (1133)
T KOG1943|consen 214 SFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLK 293 (1133)
T ss_pred HHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecC
Confidence 4444433222111111 1123334454554443320 0011345566677766221
Q ss_pred ccCCChhHHHHHHHHHHHHHH---------------HhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC
Q 000941 138 LKDMNTEIRCECLDILCDVLH---------------KFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 138 ~~~~~~~v~~~al~~L~~l~~---------------~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
-..+++....+.-..-+.+-. .-|+......+.+++.++..+++.+..||=.|.++++.+....+
T Consensus 294 prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp 373 (1133)
T KOG1943|consen 294 PRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP 373 (1133)
T ss_pred CCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc
Confidence 112233333221111111000 01111222345778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccC-----CCcHHHHHHHHHH
Q 000941 203 DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS-----ENDEELREYSLQA 277 (1215)
Q Consensus 203 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~-----~~d~elre~al~~ 277 (1215)
.++-++++..++. +..+..++..--+++.+++.+++.. --...-+..|+|.++..+..++ ....-+|++|.-.
T Consensus 374 ~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rG-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~ 451 (1133)
T KOG1943|consen 374 PELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRG-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYV 451 (1133)
T ss_pred HHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHH
Confidence 8888888888888 4444333345558888888888742 2233357889999998886421 1223589987666
Q ss_pred HHHHHHh-ChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHH
Q 000941 278 LESFLLR-CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAAL 356 (1215)
Q Consensus 278 l~~l~~~-~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~l 356 (1215)
+=+|.+. -|.+++|++..+...++-..-|||. -.+||+|+.++...
T Consensus 452 ~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre---------------------------------vncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 452 CWAFARAYSPSDLKPVLQSLASALLIVALFDRE---------------------------------VNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch---------------------------------hhHhHHHHHHHHHH
Confidence 6666664 4678999999999998887777763 25788888888777
Q ss_pred HhhCchh---hH-----HH-------------------HHHHHHHHHhh-----hcccchhHHHHHHHHHHHHHHHhccc
Q 000941 357 IVSRPEM---LS-----KL-------------------YEEACPKLIDR-----FKEREENVKMDVFNTFIELVRQTGNV 404 (1215)
Q Consensus 357 i~~~~~~---l~-----~~-------------------~~~i~p~Li~~-----~~d~e~~Vr~~~~~~l~~l~~~~~~~ 404 (1215)
+...++. ++ ++ |+.....+++. .-+=...+|..+..++..+....
T Consensus 499 VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~--- 575 (1133)
T KOG1943|consen 499 VGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE--- 575 (1133)
T ss_pred hccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh---
Confidence 7553211 00 01 11111111111 11223445555666666644332
Q ss_pred CCCcCCCCCCChhhHHH-HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch---h---h-hh---hhhhhhHHHH
Q 000941 405 TKGQIDNNELNPRWLLK-QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD---C---L-AD---HIGSLIPGIE 473 (1215)
Q Consensus 405 ~~~~~~~~~~~~~~~L~-~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~---~---l-~~---~~~~lv~~l~ 473 (1215)
|. .+. .++|++++.+ ..++...|.+++-+.++++..... . + +. .+.+++|.+.
T Consensus 576 -----------pk-~~a~~~L~~lld~~----ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~ 639 (1133)
T KOG1943|consen 576 -----------PK-YLADYVLPPLLDST----LSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPIC 639 (1133)
T ss_pred -----------HH-hhcccchhhhhhhh----cCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHH
Confidence 21 222 3456665543 334566788887777776654321 0 1 11 1222344444
Q ss_pred HhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhh-hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCC
Q 000941 474 KSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY-IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFD 552 (1215)
Q Consensus 474 ~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~-l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 552 (1215)
..--.+....-++...+.++..+..++. ..+..+ .......+.+.+.++. .++..|...+++++...--.
T Consensus 640 ~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~------- 710 (1133)
T KOG1943|consen 640 DRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKA------- 710 (1133)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhc-------
Confidence 3222221112345556666666654432 233332 2223333344443443 68888999999998654221
Q ss_pred ChhcHH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhH-HHHHHhhc---cchhHHHHHHHHHHH
Q 000941 553 FKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACL-PVLVDRMG---NEITRLTAVKAFAVI 627 (1215)
Q Consensus 553 ~~~~l~-~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l-~~L~~~L~---~e~~r~~a~~al~~i 627 (1215)
.++.. ++....+..+.+. .+..+|+--+.++|.+..- .+.-.+++.+ ..+++... ....|..++.++..+
T Consensus 711 -d~~~~~~li~~~ls~~~~~-~~~~~r~g~~lal~~lp~~---~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v 785 (1133)
T KOG1943|consen 711 -DEGEEAPLITRYLSRLTKC-SEERIRRGLILALGVLPSE---LIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHV 785 (1133)
T ss_pred -CchhhhHHHHHHHHHhcCc-hHHHHHHHHHHHHccCcHH---hhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence 11111 3555556655422 2345555555555543311 1211222222 22222111 223577788888877
Q ss_pred HcCC----CCCchhHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHhCC--CCCcchHHHHHHHhh-hhcCCC
Q 000941 628 AASP----LHIDLTCVLEHVIAELTAFLRKA----NRALRQATLGTMNSLVVAYGD--KIGASAYEVIIVELS-TLISDS 696 (1215)
Q Consensus 628 ~~s~----~~~~~~~~l~~~l~~L~~~L~~~----~~~lr~~al~~L~~l~~~~~~--~~~~~~~~~~l~~l~-~~l~~~ 696 (1215)
+... ....+.++...++..+..+..++ .+-+|.+|+.++..+.....+ -++.+.+..++..+. +....
T Consensus 786 ~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veK- 864 (1133)
T KOG1943|consen 786 CKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEK- 864 (1133)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHH-
Confidence 6211 12233455555555555554332 356999999999988765542 244444444444322 22222
Q ss_pred ChhhHHHHHHHHHHHhh
Q 000941 697 DLHMTALALELCCTLMA 713 (1215)
Q Consensus 697 d~~~~~~al~~l~~l~~ 713 (1215)
-..+++.+..++.+++.
T Consensus 865 Idrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 865 IDRLRELAASALNQIVV 881 (1133)
T ss_pred HHHHHHHHHHHHhceee
Confidence 22347777777777765
No 33
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.4e-06 Score=101.25 Aligned_cols=636 Identities=13% Similarity=0.159 Sum_probs=306.0
Q ss_pred CCcchhhhhHHHHHHHhccccC-------CCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHH
Q 000941 16 KDKDFRYMATSDLLNELNKESF-------KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~-------~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~ 88 (1215)
.|+..|-.|..-++|.+.+.|. ++.+...+.+...++.++-.....+|.+=...|+-+.+.=-++.|+.+++.
T Consensus 51 ~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~d 130 (960)
T KOG1992|consen 51 QDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPD 130 (960)
T ss_pred cChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 4788899999999999987653 344455666777777777767678999988889888877667889999999
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhH
Q 000941 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH 168 (1215)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~ 168 (1215)
|+..+.+++-.+-. +..+.. .+++++. .++.|.+++ ..++..+.+..-.|..
T Consensus 131 L~~~ls~~D~~~~~-gVL~ta------------hsiFkr~-------------R~efrSdaL--~~EIK~vLd~f~~Plt 182 (960)
T KOG1992|consen 131 LVARLSSGDFNVIN-GVLVTA------------HSIFKRY-------------RPEFRSDAL--WLEIKLVLDRFAEPLT 182 (960)
T ss_pred HHhhccccchHHHH-HHHHHH------------HHHHHhc-------------CcccccHHH--HHHHHHHHHhhHhHHH
Confidence 99988654321111 111000 1111110 122233332 1222212111110111
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH-Hhhhhhhhcc
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL-SRAVGYRFGP 247 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l-~~~~~~~~~~ 247 (1215)
+ +....+...+... . ....++.+...+ ...+..+-++ +.-.|..|..
T Consensus 183 ~-Lf~~t~~l~~~~~---------------~--~~~~l~~lf~vl--------------ll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 183 D-LFRKTMELIQRHA---------------N--DAAALNILFGVL--------------LLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred H-HHHHHHHHHhhcc---------------c--chhHHHHHHHHH--------------HHHHHHHHhhhcccchHHHHh
Confidence 1 1111111110000 0 000011111000 0011111111 2235677888
Q ss_pred chhhhHHHHHHhhcccC----CCc------HHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc---cCCCC----
Q 000941 248 HLGDTVPVLIDYCTSAS----END------EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS---YDPNF---- 310 (1215)
Q Consensus 248 ~l~~iip~ll~~~~~~~----~~d------~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~---~dpn~---- 310 (1215)
++++-|+...+.+..+. .++ +++|....+-+.-.+.+++++|.||+++.+.+...++. -||.|
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 88888999888887431 111 23565555666677888999999999999876555442 22222
Q ss_pred ----------------CCCCCCCc------c----------cccccccchhhhcCCCC----CCCCccHHHHHHHHHHHH
Q 000941 311 ----------------TDNMEEDS------D----------DEAYEEEEEDESANEYT----DDEDASWKVRRAAAKCLA 354 (1215)
Q Consensus 311 ----------------~~~~d~d~------~----------~~~~~~~~d~~~~~~~~----dd~d~swkvR~~Aa~~L~ 354 (1215)
.+-...+. + ..|++-|||+. .+|. +..|.. .=||+|+..++
T Consensus 311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~p--leYiRRDlEGsDvd-TRRR~a~dlvr 387 (960)
T KOG1992|consen 311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNP--LEYIRRDLEGSDVD-TRRRAAIDLVR 387 (960)
T ss_pred HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCH--HHHHHHhcccCCcc-hhHHHHHHHHH
Confidence 10000000 0 00000011110 0111 111211 34899999999
Q ss_pred HHHhhCchhhHHHHHHHHHHHHhhh-cccc--hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHH
Q 000941 355 ALIVSRPEMLSKLYEEACPKLIDRF-KERE--ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI 431 (1215)
Q Consensus 355 ~li~~~~~~l~~~~~~i~p~Li~~~-~d~e--~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l 431 (1215)
.+...+-..+..++...+..+++.+ +++. |.-+..++....++....+....+..+..... .+.++ ..+.+
T Consensus 388 gL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lv---dv~~F---f~~~i 461 (960)
T KOG1992|consen 388 GLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELV---DVVDF---FANQI 461 (960)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccc---cHHHH---HHHHh
Confidence 9988886666667777777777655 4443 33333444444444433222111111111111 12222 22233
Q ss_pred HHHhccc----ChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC-------
Q 000941 432 NRQLREK----SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH------- 500 (1215)
Q Consensus 432 ~~~L~~~----~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~------- 500 (1215)
...|.++ .+-.|.+++...-.+-...+ ..|+-.++|.+...+...+ .-+..=|...+-.++.-.
T Consensus 462 lp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s--~vvhsYAA~aiEkil~vre~~~~~i 536 (960)
T KOG1992|consen 462 LPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAES--RVVHSYAAIAIEKLLTVRENSNAKI 536 (960)
T ss_pred hHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHhccccccCccccc
Confidence 3333332 22344444432222221111 2477777888888776432 223332333344433221
Q ss_pred -CCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhh---ccCCCHH
Q 000941 501 -SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT---NQDQDQE 576 (1215)
Q Consensus 501 -~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~---~~d~~~~ 576 (1215)
+++.+.||+..++.-+.+.+.-+...--..-..++..++... .....|+.+.++..+-+.+. .+-.++.
T Consensus 537 f~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~-------~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 537 FGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL-------QSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred cchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC-------HHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 234555666677666666554221100001112222222211 11233444444444433332 1222333
Q ss_pred HHHHHHHHHHHHHHhccCc----ccchhhhhHHHHHHhhccchhH--HHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 000941 577 VKECAISCMGLVISTFGDN----LGAELPACLPVLVDRMGNEITR--LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF 650 (1215)
Q Consensus 577 Vr~~Ai~~lg~l~~~~~~~----l~~~~~~~l~~L~~~L~~e~~r--~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~ 650 (1215)
-..=-+..+|.++...++. +......++|++..-++++.+- -.+.+.++.+.....+ ++.+ ..++.+..+
T Consensus 610 fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~-~ip~---~~~~l~~~l 685 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG-TIPD---SYSPLFPPL 685 (960)
T ss_pred hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCch---hHHHHHHHh
Confidence 3344467777777666432 3345667788887777776532 3567777777743222 2222 222222233
Q ss_pred HHHhhhHHHH---HHHHHHHHHHHHhCCCCCc-chHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhh
Q 000941 651 LRKANRALRQ---ATLGTMNSLVVAYGDKIGA-SAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVR 726 (1215)
Q Consensus 651 L~~~~~~lr~---~al~~L~~l~~~~~~~~~~-~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~ 726 (1215)
|+.+-|..++ +.+..+..++...+..+.+ +-+..+++.+..++.+.-. =+..+..+.++... ..|....+|.
T Consensus 686 Lsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~--Dh~GF~LLn~i~~~--~~~~~~~py~ 761 (960)
T KOG1992|consen 686 LSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAN--DHHGFYLLNTIIES--IPPNELAPYM 761 (960)
T ss_pred cCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCccc--chhHHHHHHHHHhc--CCHhhhhHHH
Confidence 3333333332 3344445555443333332 3367788888888753211 13567777777775 3444455677
Q ss_pred hhhHHHHHHHhhhc
Q 000941 727 NKVLPQALALIKSS 740 (1215)
Q Consensus 727 ~~~l~~l~~ll~s~ 740 (1215)
.++...+++-++..
T Consensus 762 k~i~~llf~Rlqns 775 (960)
T KOG1992|consen 762 KQIFGLLFQRLQNS 775 (960)
T ss_pred HHHHHHHHHHHhcc
Confidence 78887777766544
No 34
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=3.5e-05 Score=92.16 Aligned_cols=548 Identities=18% Similarity=0.182 Sum_probs=310.9
Q ss_pred HHHHHHHh-cC-CCcchhhhhHHHHHHHhccccCC---------CChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHh
Q 000941 6 MAAILEKI-TG-KDKDFRYMATSDLLNELNKESFK---------ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1215)
Q Consensus 6 l~~ll~~~-~~-~d~d~R~mAl~dL~~~l~~~~~~---------~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~ 74 (1215)
+..+|+-+ .+ .+-.+|..|.-=|+|.+.+.|-. ..++....+.+.++..+--...-+|-+=..|+..+.
T Consensus 38 v~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii 117 (1010)
T KOG1991|consen 38 VSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTII 117 (1010)
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34555553 33 44456999999999999986533 344555567777887777666667777777887777
Q ss_pred hccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc-----hhhHHHHHHhHhHHHH----------------
Q 000941 75 KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT-----SSLAQSIHTSLTPQLT---------------- 133 (1215)
Q Consensus 75 ~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~-----~~~~~~~~~~l~p~L~---------------- 133 (1215)
..=.+++|+.+++..-..+++++.-.--++..+|..++..-.- ..-...++..+.|.++
T Consensus 118 ~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~e 197 (1010)
T KOG1991|consen 118 KADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVE 197 (1010)
T ss_pred hcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6544579999999999998776544444556666555532110 0000001111111110
Q ss_pred -----------------------------------hhhhccCC------Chh---------HHHHHHHHHHHHHHHhhhh
Q 000941 134 -----------------------------------KGITLKDM------NTE---------IRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 134 -----------------------------------~~l~~~~~------~~~---------v~~~al~~L~~l~~~~g~~ 163 (1215)
..++..-| +++ .+.=|+.+|..+.+|+|+-
T Consensus 198 l~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~ 277 (1010)
T KOG1991|consen 198 LQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSP 277 (1010)
T ss_pred HHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCc
Confidence 11111100 122 3444777888888887652
Q ss_pred hh--------------hhHHHHHHHHhhhhc-------------------------------------------------
Q 000941 164 MS--------------NDHERLLSALLPQLS------------------------------------------------- 180 (1215)
Q Consensus 164 l~--------------~~~~~ll~~ll~~l~------------------------------------------------- 180 (1215)
-. .+.+.+++.+++.+.
T Consensus 278 ~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlm 357 (1010)
T KOG1991|consen 278 SLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLM 357 (1010)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 10 112333333332221
Q ss_pred ------------CChHHHHH-------------HHHHHHHHHHhhcCHHHHHHHHHHHHHHhh------cCCCChHHHHH
Q 000941 181 ------------ANQASVRK-------------KSVSCIASLASSLSDDLLAKATIEVVRNLR------SKGAKPEMIRT 229 (1215)
Q Consensus 181 ------------~~~~~vrk-------------~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~------~~~~~~~~~~~ 229 (1215)
||..-+|+ +|..++-.++.--+++.|+.+++.+.+.+. .++.+......
T Consensus 358 c~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdG 437 (1010)
T KOG1991|consen 358 CFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDG 437 (1010)
T ss_pred CCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhh
Confidence 11112554 355555555655556677888888888886 33333456778
Q ss_pred HHHHHHHHHhhhhhhhccchhh----hHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc
Q 000941 230 NIQMVGALSRAVGYRFGPHLGD----TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 230 ~i~~l~~l~~~~~~~~~~~l~~----iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
++.++|++++..-++ .||-+. +++.++..++ ...--+|.-|.+.+..+..---++. ..+.+++....+.+.
T Consensus 438 AL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~vl~~~~~~df~d~-~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWVLSQFSSIDFKDP-NNLSEALELTHNCLL 512 (1010)
T ss_pred HHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhc---CchhHHHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHHHhc
Confidence 999999999765433 443222 2333333333 2334578777777777764322111 234455555555554
Q ss_pred cCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc---hhhHHHHHHHHHHHHhhhccc
Q 000941 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP---EMLSKLYEEACPKLIDRFKER 382 (1215)
Q Consensus 306 ~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~---~~l~~~~~~i~p~Li~~~~d~ 382 (1215)
-| ..-.||--|+.+|..++.+.+ +.+.++...++..|++-.++-
T Consensus 513 ~d---------------------------------~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 513 ND---------------------------------NELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred cC---------------------------------CcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 11 112789999999999998865 557777777777777777777
Q ss_pred chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc---cC---hhhHHHHH---HHHHHH
Q 000941 383 EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE---KS---IKTKVGAF---SVLREL 453 (1215)
Q Consensus 383 e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~---~~---~~~r~~~~---~~l~~L 453 (1215)
|-+.-..++ .+++..-+. +-.|.+ .+....+.....+.+.+ .+ .....+|. +++.++
T Consensus 560 End~Lt~vm---e~iV~~fse---------ElsPfA--~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 560 ENDDLTNVM---EKIVCKFSE---------ELSPFA--VELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred chhHHHHHH---HHHHHHHHH---------hhchhH--HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 655433333 333332210 111221 22334444555555543 11 12233444 444455
Q ss_pred HHhC---chhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHH
Q 000941 454 VVVL---PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAE 530 (1215)
Q Consensus 454 ~~~~---~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~ 530 (1215)
..+. |..+...-+.+.|.+...+++.- .++..+++.+...+.- + ...+.|-+=.+++.+...+.+....-...
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i--~dfyeE~~ei~~~~t~-~-~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIGFILKNDI--TDFYEELLEIVSSLTF-L-SKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhhh-h-hcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4432 33333444555666666665432 4566677766555421 1 12456667778888888887764444455
Q ss_pred HHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHh
Q 000941 531 ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDR 610 (1215)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~ 610 (1215)
..-.+.+++...++. -..-..|.+-++..+-..+.+.+....-.+.|..-+..++-++++.+.++++..+.+.+.+
T Consensus 702 ~~~~l~N~vt~g~~~----~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~ 777 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPS----LLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSR 777 (1010)
T ss_pred HHHHHhhheeeCchh----hhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHH
Confidence 555566665443321 1122346777887777777766555556778899999999888777777788888877788
Q ss_pred hcc
Q 000941 611 MGN 613 (1215)
Q Consensus 611 L~~ 613 (1215)
++.
T Consensus 778 l~~ 780 (1010)
T KOG1991|consen 778 LTR 780 (1010)
T ss_pred Hhc
Confidence 766
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21 E-value=1.4e-09 Score=139.11 Aligned_cols=275 Identities=18% Similarity=0.226 Sum_probs=192.0
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1215)
.++.|+..|+|+++.||..|++.|+.+.. ...++.|...+.+++..+|..++.+|..+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45678889999999999999999997642 34566777777788888999999999877654332
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1215)
.+.|...+.++ ++.||..+++.|+.+- .+. ...++..+.++++.||..|+.+|+.+..
T Consensus 686 --~~~L~~~L~~~--d~~VR~~A~~aL~~~~--~~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 686 --APALRDHLGSP--DPVVRAAALDVLRALR--AGD---------AALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred --hHHHHHHhcCC--CHHHHHHHHHHHHhhc--cCC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 12344455553 6899999999998752 111 1245667899999999999999997632
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 207 ~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
.+.++..+.+++ ..+|..+..+++.+....+ ..++.+...++ |+|+++|..++.+|..+-. +
T Consensus 744 ---~~~l~~~l~D~~--~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~--~ 805 (897)
T PRK13800 744 ---VESVAGAATDEN--REVRIAVAKGLATLGAGGA--------PAGDAVRALTG---DPDPLVRAAALAALAELGC--P 805 (897)
T ss_pred ---cHHHHHHhcCCC--HHHHHHHHHHHHHhccccc--------hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCC--c
Confidence 123455566655 3899999998888754221 12556666666 6789999999988876521 1
Q ss_pred hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHH
Q 000941 287 RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 287 ~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
+.+++.+...++ |.+|.||++|+.+|+.+-. +
T Consensus 806 -------~~~~~~l~~aL~----------------------------------d~d~~VR~~Aa~aL~~l~~--~----- 837 (897)
T PRK13800 806 -------PDDVAAATAALR----------------------------------ASAWQVRQGAARALAGAAA--D----- 837 (897)
T ss_pred -------chhHHHHHHHhc----------------------------------CCChHHHHHHHHHHHhccc--c-----
Confidence 112233334442 1239999999999986521 1
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHH
Q 000941 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1215)
Q Consensus 367 ~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~ 446 (1215)
...+.|+..++|+++.||..++.+|+.+ .+ + |...+.+.+.+++.+..+|..+
T Consensus 838 ---~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~-------------~--------~~a~~~L~~al~D~d~~Vr~~A 890 (897)
T PRK13800 838 ---VAVPALVEALTDPHLDVRKAAVLALTRW---PG-------------D--------PAARDALTTALTDSDADVRAYA 890 (897)
T ss_pred ---chHHHHHHHhcCCCHHHHHHHHHHHhcc---CC-------------C--------HHHHHHHHHHHhCCCHHHHHHH
Confidence 2346777778999999999999888774 11 1 2345566677888898999998
Q ss_pred HHHHHH
Q 000941 447 FSVLRE 452 (1215)
Q Consensus 447 ~~~l~~ 452 (1215)
...|..
T Consensus 891 ~~aL~~ 896 (897)
T PRK13800 891 RRALAH 896 (897)
T ss_pred HHHHhh
Confidence 877753
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.14 E-value=2.3e-09 Score=137.21 Aligned_cols=275 Identities=18% Similarity=0.168 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..+..|++.+.|.|+++|..|..-|...- ....++.|.+.|+|++.+||..|+..|+.+....+..
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~--- 686 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA--- 686 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch---
Confidence 45678888899999999999998885431 1357788889999999999999999999886543331
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
+.|...+.++++.+|..+..+|..+-. .. .+.++..+.+. ++.||..++..|+.+ +.
T Consensus 687 ---~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-----------~~~l~~~L~D~--d~~VR~~Av~aL~~~----~~- 743 (897)
T PRK13800 687 ---PALRDHLGSPDPVVRAAALDVLRALRA--GD-----------AALFAAALGDP--DHRVRIEAVRALVSV----DD- 743 (897)
T ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-----------HHHHHHHhcCC--CHHHHHHHHHHHhcc----cC-
Confidence 244455556677788877777765321 10 12345566664 689999999999864 11
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1215)
.+.+...+.|+++.||..++.+|+.+...-.. .++.+...+++++ ..+|..++.+++.+...
T Consensus 744 --------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~-----~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~--- 805 (897)
T PRK13800 744 --------VESVAGAATDENREVRIAVAKGLATLGAGGAP-----AGDAVRALTGDPD--PLVRAAALAALAELGCP--- 805 (897)
T ss_pred --------cHHHHHHhcCCCHHHHHHHHHHHHHhccccch-----hHHHHHHHhcCCC--HHHHHHHHHHHHhcCCc---
Confidence 12345678999999999999999988753321 1344556666654 47888888888877321
Q ss_pred hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccc
Q 000941 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1215)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~ 323 (1215)
+.+.+.+...++ ++|..+|..+.++|..+-. ++.++.+...++
T Consensus 806 ------~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~------------------ 848 (897)
T PRK13800 806 ------PDDVAAATAALR---ASAWQVRQGAARALAGAAA----------DVAVPALVEALT------------------ 848 (897)
T ss_pred ------chhHHHHHHHhc---CCChHHHHHHHHHHHhccc----------cchHHHHHHHhc------------------
Confidence 223345666666 5788999999999875421 233455555553
Q ss_pred cccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q 000941 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFI 395 (1215)
Q Consensus 324 ~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~ 395 (1215)
|.+|.||+.|+.+|+.+ ...| ...+.|...++|.+..||..+..+|.
T Consensus 849 ----------------D~~~~VR~~A~~aL~~~-~~~~--------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 849 ----------------DPHLDVRKAAVLALTRW-PGDP--------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ----------------CCCHHHHHHHHHHHhcc-CCCH--------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 12489999999999885 1122 24456666779999999999888764
No 37
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=4.5e-05 Score=94.74 Aligned_cols=666 Identities=15% Similarity=0.181 Sum_probs=336.1
Q ss_pred hHHHHHHHHHhcC--CCcchhhhh---HHHHHHHhccccCCCChHHHHHHHHHHHHhccCccc--chhHHHHHHHHHHhh
Q 000941 3 NLQMAAILEKITG--KDKDFRYMA---TSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAG--DVSGLAVKCLAPLVK 75 (1215)
Q Consensus 3 ~~~l~~ll~~~~~--~d~d~R~mA---l~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~--~Vq~~A~~~l~~l~~ 75 (1215)
+..++.+|++..+ .+.|+|..= ..||.+.++.+-.-..+..++.+...|+....+.+. ..|..|..-||.++.
T Consensus 580 ~~fl~~fL~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~Iaa 659 (1692)
T KOG1020|consen 580 NHFLTTFLERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAA 659 (1692)
T ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3567788888744 566899875 456667777654433445566666677777776654 569999999999998
Q ss_pred ccChhhHHHHHHHHHHHhcCC-----CcchhhHHH----HHHHHHHhccC---c-------hhhHHHHHHhHhHHHHhhh
Q 000941 76 KVSEPRVVEMTDKLCIKLLNG-----KDQHRDIAS----IALKTIIAEVT---T-------SSLAQSIHTSLTPQLTKGI 136 (1215)
Q Consensus 76 ~~~~~~~~~lv~~L~~~~~~~-----~~~~r~~a~----~aL~~~i~~~~---~-------~~~~~~~~~~l~p~L~~~l 136 (1215)
++....+...+.. ...+. ..+...+.. ..|--.+.... . ..+...+...+.-.....+
T Consensus 660 rLrkd~v~s~l~~---g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~ 736 (1692)
T KOG1020|consen 660 RLRKDAVLSKLEQ---GSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIM 736 (1692)
T ss_pred HHHHHHHHHHHhh---ccchhhhhhcccccccchhhhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHH
Confidence 8887666553322 11100 000011111 11111111111 0 0111222222222222222
Q ss_pred hccC--CChhHHHHHHH--HHHHHHHHhhhhhhhhHHHHHHH--HhhhhcCChH-HHHHHHHHHHHHHHhhcCHH-HHHH
Q 000941 137 TLKD--MNTEIRCECLD--ILCDVLHKFGNLMSNDHERLLSA--LLPQLSANQA-SVRKKSVSCIASLASSLSDD-LLAK 208 (1215)
Q Consensus 137 ~~~~--~~~~v~~~al~--~L~~l~~~~g~~l~~~~~~ll~~--ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~-~~~~ 208 (1215)
...+ ...+-+++..+ .-.+.+.+.+..+.-+...|.+. -....+.+++ .-+..|....-.++...+-. .|+.
T Consensus 737 ~~~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~ 816 (1692)
T KOG1020|consen 737 EENKDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP 816 (1692)
T ss_pred HhccCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH
Confidence 2111 01111222111 11111112222221111111111 0000111111 23344444444444443333 3888
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~ 288 (1215)
.+..++..+..+.. ..|..|+.|++.|+..-|.-+. -+.+-..+..-+. |...-+||+|+..++.++.+.|+-
T Consensus 817 yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~---DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 817 YLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLN---DSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhccHHH
Confidence 89999999986654 7899999999999987663221 1333333333343 567789999999999999999977
Q ss_pred hcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH
Q 000941 289 ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY 368 (1215)
Q Consensus 289 ~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~ 368 (1215)
+..|.+.|+..++ |.+-.||+-+++.++.+-..+|+.-. .
T Consensus 890 ~~qyY~~i~erIl--------------------------------------DtgvsVRKRvIKIlrdic~e~pdf~~--i 929 (1692)
T KOG1020|consen 890 IFQYYDQIIERIL--------------------------------------DTGVSVRKRVIKILRDICEETPDFSK--I 929 (1692)
T ss_pred HHHHHHHHHhhcC--------------------------------------CCchhHHHHHHHHHHHHHHhCCChhh--H
Confidence 7777776665431 23458999999999999988886422 2
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhccc-------------------------CCCcCCC------------
Q 000941 369 EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV-------------------------TKGQIDN------------ 411 (1215)
Q Consensus 369 ~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~-------------------------~~~~~~~------------ 411 (1215)
..++-.++.|.+|.|.+|..-+..++..+.=..-+. ..|..+-
T Consensus 930 ~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~ 1009 (1692)
T KOG1020|consen 930 VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT 1009 (1692)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh
Confidence 234455667788887777766666665543211000 0010000
Q ss_pred CCC--ChhhHHHHHHHHHHHHHHHHhc------------ccChhh-HHHHHHHHHHHHHhCchhhh-hhhhhhhHHHHHh
Q 000941 412 NEL--NPRWLLKQEVSKIVKSINRQLR------------EKSIKT-KVGAFSVLRELVVVLPDCLA-DHIGSLIPGIEKS 475 (1215)
Q Consensus 412 ~~~--~~~~~L~~~~p~i~~~l~~~L~------------~~~~~~-r~~~~~~l~~L~~~~~~~l~-~~~~~lv~~l~~~ 475 (1215)
... .|. ....+..++..+..++. +++..+ ..+++.+|..++...|.-+. .|+..+-|.+...
T Consensus 1010 ~~~~~~~v--~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~ 1087 (1692)
T KOG1020|consen 1010 MKESVKPV--ALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK 1087 (1692)
T ss_pred hhhhhhHH--HHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc
Confidence 000 000 01111222222222221 111223 35667788888888888888 6888888877654
Q ss_pred hcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChh
Q 000941 476 LNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP 555 (1215)
Q Consensus 476 l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 555 (1215)
- +..+...+....+..+..++.-.. +.-..++..|=..+.+.+--.......+|..|++.++..... -..
T Consensus 1088 ~-~t~~~~~fl~~vi~Ile~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~--------~~~ 1157 (1692)
T KOG1020|consen 1088 A-STIEEAQFLYYVIQILECVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD--------GAK 1157 (1692)
T ss_pred c-cchHHHHHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc--------chH
Confidence 1 111112333333344444432211 111224555555555555444556778888888888865322 123
Q ss_pred cHHHHHHHHHHHhh---cc---CCC---HHHHHHHHHHHHHHHHhcc--------Ccc---c-chhhhhHHHHHH--hhc
Q 000941 556 YVQPIYNAIMSRLT---NQ---DQD---QEVKECAISCMGLVISTFG--------DNL---G-AELPACLPVLVD--RMG 612 (1215)
Q Consensus 556 ~l~~l~~~l~~~l~---~~---d~~---~~Vr~~Ai~~lg~l~~~~~--------~~l---~-~~~~~~l~~L~~--~L~ 612 (1215)
.+..++..++..+. .+ +.+ ...-++.+.++|.++.++. ... . .....++..|+- +..
T Consensus 1158 ~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~ 1237 (1692)
T KOG1020|consen 1158 VVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK 1237 (1692)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh
Confidence 34444544444442 22 211 1234678999999998772 110 0 123344444443 334
Q ss_pred cchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHh-------C---------
Q 000941 613 NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVAY-------G--------- 674 (1215)
Q Consensus 613 ~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~~-------~--------- 674 (1215)
+...|..|+.++|.++......-++ +++...+...|... ++..+..++..+...+... +
T Consensus 1238 ~~~lR~~al~~Lg~~ci~hp~l~~~---~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~ 1314 (1692)
T KOG1020|consen 1238 DGELRRKALINLGFICIQHPSLFTS---REVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKS 1314 (1692)
T ss_pred hhHHHHHHHHHHHHHHhhCchhhhh---HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhH
Confidence 5678999999999998432111112 22333333334322 2223444444443332211 0
Q ss_pred ----------CCCCcc-----hHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhh
Q 000941 675 ----------DKIGAS-----AYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKS 739 (1215)
Q Consensus 675 ----------~~~~~~-----~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s 739 (1215)
+..... .++..+..+....-+.|.+++..|+.++.-++.-. -......+|.++.+-.+
T Consensus 1315 edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QG-------LVhP~~cvPtLIAL~Td 1387 (1692)
T KOG1020|consen 1315 EDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQG-------LVHPVHCVPTLIALETD 1387 (1692)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc-------CCCccchhhhheeecCC
Confidence 001111 23334444444444677888888888777766532 12233556666655544
Q ss_pred c
Q 000941 740 S 740 (1215)
Q Consensus 740 ~ 740 (1215)
|
T Consensus 1388 p 1388 (1692)
T KOG1020|consen 1388 P 1388 (1692)
T ss_pred h
Confidence 4
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-05 Score=96.53 Aligned_cols=506 Identities=15% Similarity=0.147 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
+..+.+++.|+..|+|.+..||+.|+|-+|.+..+++..-....+...+..+. +-+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~-p~e----------------------- 392 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN-PAE----------------------- 392 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC-cCC-----------------------
Confidence 56678999999999999999999999999999998885444444444444221 100
Q ss_pred HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC--------hHHHHHHHHHH
Q 000941 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--------QASVRKKSVSC 193 (1215)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~--------~~~vrk~a~~~ 193 (1215)
+...=+++|-+|+++..+ |-.+..-.+.+++.++..+.-+ ...||..|+..
T Consensus 393 --------------------~~~aWHgacLaLAELA~r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~ 451 (1133)
T KOG1943|consen 393 --------------------DDSAWHGACLALAELALR-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYV 451 (1133)
T ss_pred --------------------chhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHH
Confidence 122333555555555432 2222223344444444444322 23699999999
Q ss_pred HHHHHhhcCHHHHHH----HHHHHH-HHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcH
Q 000941 194 IASLASSLSDDLLAK----ATIEVV-RNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDE 268 (1215)
Q Consensus 194 l~~l~~~~~~~~~~~----l~~~ll-~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~ 268 (1215)
+=+++...+...++. +...++ ..+.++.. ..|++|--++......-|. .||=-.++.. .++ -.-
T Consensus 452 ~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrev--ncRRAAsAAlqE~VGR~~n--~p~Gi~Lis~-~dy------~sV 520 (1133)
T KOG1943|consen 452 CWAFARAYSPSDLKPVLQSLASALLIVALFDREV--NCRRAASAALQENVGRQGN--FPHGISLIST-IDY------FSV 520 (1133)
T ss_pred HHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchh--hHhHHHHHHHHHHhccCCC--CCCchhhhhh-cch------hhh
Confidence 999998887765444 444443 34456554 5777766555544432211 1111111111 011 112
Q ss_pred HHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHH-hccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHH
Q 000941 269 ELREYSLQALESFLLRCPRDISSYCDEILHLTLEY-LSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRR 347 (1215)
Q Consensus 269 elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~-l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~ 347 (1215)
-.|..|...+...+..++ .|...+++.++.. +.+ |+ -++|+
T Consensus 521 ~~rsNcy~~l~~~ia~~~----~y~~~~f~~L~t~Kv~H----------------------Wd------------~~ire 562 (1133)
T KOG1943|consen 521 TNRSNCYLDLCVSIAEFS----GYREPVFNHLLTKKVCH----------------------WD------------VKIRE 562 (1133)
T ss_pred hhhhhHHHHHhHHHHhhh----hHHHHHHHHHHhccccc----------------------cc------------HHHHH
Confidence 245556665555555444 3444444433221 210 00 17899
Q ss_pred HHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChh-hHH-HH---
Q 000941 348 AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR-WLL-KQ--- 422 (1215)
Q Consensus 348 ~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~L-~~--- 422 (1215)
.|+.+|..+....|+++.. ..+|.+++.+--.....|...+.+.+.++-...... |. ..+ ++
T Consensus 563 laa~aL~~Ls~~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~----------~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE----------PVIKGLDENRIA 629 (1133)
T ss_pred HHHHHHHHHHHhhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh----------hhhhhhHHHHhh
Confidence 9999999999888876653 234555555545567778887777777765432100 00 001 11
Q ss_pred HHHHHHHHHHHHhccc--ChhhHHHHHHHHHHHHHhCchhhhhhhhh-hhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 423 EVSKIVKSINRQLREK--SIKTKVGAFSVLRELVVVLPDCLADHIGS-LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~--~~~~r~~~~~~l~~L~~~~~~~l~~~~~~-lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
-++.+++.+...--.+ ....|++.+.++..+....+..+.+.+.. .-..+.+.+.++ ..+|.++...++.++..
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---NQIRDAAVSAVSDLVST 706 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHH
Confidence 1122222222111111 12244555555555544333222222111 222223333222 25667777777777644
Q ss_pred CCCCcchhh-hhhhHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhccCCCcCCCCCChhc-HHHHHHHHHHHhhccCCCHH
Q 000941 500 HSPPVFHPY-IKALSSPVLAAVGERY-YKVTAEALRVCGELVRVLRPSVEGLGFDFKPY-VQPIYNAIMSRLTNQDQDQE 576 (1215)
Q Consensus 500 ~~~~~~~~~-l~~l~p~l~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~d~~~~ 576 (1215)
.- ...+. -.+++...+..+.+.. .+++.--.-+++.+... ...-+ -+.+...++... -.|..++
T Consensus 707 y~--~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~----------~i~~~~q~~lc~~~l~~~-p~d~~a~ 773 (1133)
T KOG1943|consen 707 YV--KADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSE----------LIHRHLQEKLCKLVLELL-PSDAWAE 773 (1133)
T ss_pred HH--hcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHH----------hhchHHHHHHHHHHhccC-cccccHH
Confidence 21 11121 2245555555555543 33333222223322211 11112 222333333332 2344688
Q ss_pred HHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhccc----------hhHHHHHHHHHHHH--cCCCCCch-hHHHHH
Q 000941 577 VKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNE----------ITRLTAVKAFAVIA--ASPLHIDL-TCVLEH 642 (1215)
Q Consensus 577 Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~e----------~~r~~a~~al~~i~--~s~~~~~~-~~~l~~ 642 (1215)
-|+..+.++..++...+. .+.....++...|++.+.|= -+|.+|++++..+. .++ +.-+ ...+..
T Consensus 774 aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~-p~~ld~~~i~~ 852 (1133)
T KOG1943|consen 774 ARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS-PKLLDEDSINR 852 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC-cccccHHHHHH
Confidence 899999999999988873 34446677777777766431 16889999998775 221 1112 223333
Q ss_pred HHH-HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000941 643 VIA-ELTAFLRKANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 643 ~l~-~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1215)
++- .+.+...+-++ +|..+..|+..+...
T Consensus 853 ~~~~~vqQ~veKIdr-lre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 853 IIRYFVQQAVEKIDR-LRELAASALNQIVVH 882 (1133)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHhceeec
Confidence 333 22233334455 499999999998876
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=3.1e-07 Score=110.70 Aligned_cols=542 Identities=13% Similarity=0.135 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHh-cCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKL-LNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~-~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
.....++.+.... |.+-+|+..+..-+|.+.+.++.+....++...+..+ ......+|+.+...|.+++...+....
T Consensus 118 tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~- 195 (759)
T KOG0211|consen 118 TRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL- 195 (759)
T ss_pred hhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH-
Confidence 3456777777777 8899999999999999988877766665555444443 333455799999999999888776222
Q ss_pred HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 000941 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1215)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1215)
...++|.+....... -..-|..++.+++.....+.+ .+-...+.+.+...-++..+.||+.+..-++.++.+.
T Consensus 196 ---~~~lv~l~~~l~~~d--~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 196 ---REHLVPLLKRLATGD--WFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred ---HHHHHHHHHHccchh--hhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 233334332211111 122355566666555444432 1234566666777778888999999999999999999
Q ss_pred CHHHHHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH
Q 000941 202 SDDLLAK-ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1215)
Q Consensus 202 ~~~~~~~-l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1215)
+.+.... +++.+.+...+.+ +.+|..++..++++........ +....+.+.+++..+ +.+..+|......+..
T Consensus 269 ~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~---d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 269 ESEIVKSEVLPTLIQLLRDDQ--DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE---DGSWRVSYMVADKFSE 342 (759)
T ss_pred HHHHHHhhccHHHhhhhhcch--hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc---ChhHHHHHHHhhhhhh
Confidence 8875444 4454555444444 4789999999999887654332 555667777777654 3445555544444333
Q ss_pred HHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC
Q 000941 281 FLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360 (1215)
Q Consensus 281 l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~ 360 (1215)
+...... ....++.++.....++ |..|.+|.+.+.=...+-...
T Consensus 343 L~~~~~~--~~~~~~~~~~~~~l~~----------------------------------~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 343 LSSAVGP--SATRTQLVPPVSNLLK----------------------------------DEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred HHHHhcc--ccCcccchhhHHHHhc----------------------------------chhhhhhHHhhcchHHHhhhc
Confidence 3332221 1111222222222221 234788887765544433221
Q ss_pred --chhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhccc
Q 000941 361 --PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK 438 (1215)
Q Consensus 361 --~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~ 438 (1215)
+.+.....+.++|.+..-..+.++.||.........+.-..+ ..+.++.+.+.....+++.
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-----------------k~~ti~~llp~~~~~l~de 449 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-----------------KERTISELLPLLIGNLKDE 449 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-----------------cCcCccccChhhhhhcchh
Confidence 111122333455665544577778888764433222211110 1222445555666667777
Q ss_pred ChhhHHHHHHHHHHHHHhCc-hhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHH
Q 000941 439 SIKTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVL 517 (1215)
Q Consensus 439 ~~~~r~~~~~~l~~L~~~~~-~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~ 517 (1215)
.+.+|......+..+-.+.+ .+...+...++|.+...-.+.. .+++.+.+..+..++...+-+.+ -+.+-+.+.
T Consensus 450 ~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~--wRvr~ail~~ip~la~q~~~~~~---~~~~~~l~~ 524 (759)
T KOG0211|consen 450 DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLL--WRVRLAILEYIPQLALQLGVEFF---DEKLAELLR 524 (759)
T ss_pred hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchh--HHHHHHHHHHHHHHHHhhhhHHh---hHHHHHHHH
Confidence 77788777666655544432 2344566677777776655542 67888888888888765442222 334455555
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCccc
Q 000941 518 AAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG 597 (1215)
Q Consensus 518 ~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~ 597 (1215)
..+.|..+.++..|...+-.++..+|. .+ +...+.+.++.... +...-+|...+.++..++..+|..+
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G~-------~w--~~~~~i~k~L~~~~--q~~y~~R~t~l~si~~la~v~g~ei- 592 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFGS-------EW--ARLEEIPKLLAMDL--QDNYLVRMTTLFSIHELAEVLGQEI- 592 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhCc-------ch--hHHHhhHHHHHHhc--CcccchhhHHHHHHHHHHHHhccHH-
Confidence 667788889999999999888887752 12 23445555554433 2257899999999999999998755
Q ss_pred chhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000941 598 AELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAY 673 (1215)
Q Consensus 598 ~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 673 (1215)
+...++|.+.+...+. .+|.++++.+..+..- .+.+..=..+.|.+..+.++++...|..|..+++.+....
T Consensus 593 -~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 593 -TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred -HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 5677788888766554 4899999999887621 1112222344555555556788889999999888876543
No 40
>PRK09687 putative lyase; Provisional
Probab=99.00 E-value=2.2e-08 Score=109.20 Aligned_cols=239 Identities=13% Similarity=0.027 Sum_probs=166.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
+.+..|++.+.+.|..+|..|...|.. +. ...+++.+.++++|+++.||..|+..||++-..-. ...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~-~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~~~ 89 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQL-RG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR--CQD 89 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHh-cC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--chH
Confidence 567888888999999999999988842 21 14677778888999999999999999999854211 123
Q ss_pred HHHHHHHHH-hcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 84 EMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 84 ~lv~~L~~~-~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
..++.|... ..++++.+|..+..+|+.++..-+. ....++..+...+.+. ++.||..+...|+.+ |
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~------~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~----~- 156 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPL------YSPKIVEQSQITAFDK--STNVRFAVAFALSVI----N- 156 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc------cchHHHHHHHHHhhCC--CHHHHHHHHHHHhcc----C-
Confidence 556666655 3456678899999999887543221 1122334444445554 689999999999744 2
Q ss_pred hhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 163 ~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
.+..++.++..+.++++.||..|+.+||.+. +-.. ..++.++..+.+.++ .+|..++.++|.+-.
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~----~~~~~L~~~L~D~~~--~VR~~A~~aLg~~~~--- 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNP----DIREAFVAMLQDKNE--EIRIEAIIGLALRKD--- 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCH----HHHHHHHHHhcCCCh--HHHHHHHHHHHccCC---
Confidence 2456788888899999999999999999882 2223 355667777776654 788888888876422
Q ss_pred hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc
Q 000941 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 243 ~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
+..+|.+++.++. +.+|..+..+++.+-. +..++.+.+++.
T Consensus 222 -------~~av~~Li~~L~~-----~~~~~~a~~ALg~ig~----------~~a~p~L~~l~~ 262 (280)
T PRK09687 222 -------KRVLSVLIKELKK-----GTVGDLIIEAAGELGD----------KTLLPVLDTLLY 262 (280)
T ss_pred -------hhHHHHHHHHHcC-----CchHHHHHHHHHhcCC----------HhHHHHHHHHHh
Confidence 4688888888862 2367666666664421 456677777664
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.98 E-value=2.3e-06 Score=102.18 Aligned_cols=434 Identities=16% Similarity=0.166 Sum_probs=267.8
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh-HH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR-VV 83 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~-~~ 83 (1215)
.+...++.+.+. +-|+-++..++..+....+ + +... .+.++.+|++.+.+.=..++.+|..+........ .+
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~-l--~~~~--~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~ 76 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPF-L--ERLP--EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLP 76 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhH-H--Hhch--HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHH
Confidence 355667777666 6789999999888765331 0 1111 1228899999988888999999999988766654 67
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHH-HHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS-IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~-~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
.+.+.|...+.++++.+|..+..+|+.++.+... .... .-..++|.++..+.+. +..|...|..+|..+.+....
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~--~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG--AAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--HHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCchh
Confidence 8888888888889999999999888887754321 1111 1256788999999875 589999999999999865332
Q ss_pred hhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH--H--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000941 163 LMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--L--AKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 163 ~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1215)
. .. +.+.++..+...+..++..+|-|+..++..++...++.. . ..+++.++..+++.+ .-++..++++++.+
T Consensus 153 ~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD--iLvqlnalell~~L 229 (503)
T PF10508_consen 153 L-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD--ILVQLNALELLSEL 229 (503)
T ss_pred H-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc--HHHHHHHHHHHHHH
Confidence 1 11 112236666666666677899999999999987665542 2 237888888887732 36788899999999
Q ss_pred Hhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHH----HHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCC
Q 000941 238 SRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELRE----YSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFT 311 (1215)
Q Consensus 238 ~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre----~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~ 311 (1215)
+. .++. ..|+ ..+++.+.+.+... .+|+..+. ..+.+++.++...|..+..-.|.++..+...+..
T Consensus 230 a~-~~~g-~~yL~~~gi~~~L~~~l~~~-~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s----- 301 (503)
T PF10508_consen 230 AE-TPHG-LQYLEQQGIFDKLSNLLQDS-EEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES----- 301 (503)
T ss_pred Hc-ChhH-HHHHHhCCHHHHHHHHHhcc-ccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC-----
Confidence 99 3332 3344 34677777777643 23332222 2235666666666655555556666655544320
Q ss_pred CCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc--hhh----HHHHHHHHHHHHhhhcccchh
Q 000941 312 DNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EML----SKLYEEACPKLIDRFKEREEN 385 (1215)
Q Consensus 312 ~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~--~~l----~~~~~~i~p~Li~~~~d~e~~ 385 (1215)
.| -..|.+|..+++.+..+.. ..+ .+-+..++...-...+....+
T Consensus 302 ---------------------------~d--~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 302 ---------------------------QD--PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred ---------------------------CC--hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 00 1457888889987764421 222 112223333333333444467
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH------HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch
Q 000941 386 VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV------SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1215)
Q Consensus 386 Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~------p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~ 459 (1215)
+|..++++++.++....... ......+.+.| .+....+...++.+=+..|.+++.+|..++... .
T Consensus 353 lk~r~l~al~~il~~~~~~~--------~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-W 423 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQ--------DNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-W 423 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-H
Confidence 89999999999986432100 00000111111 111115556666676789999999999999753 3
Q ss_pred hhhhhhhhhhHHHHHhhcCCCCc--chhHHHHHHHHHHHhccC
Q 000941 460 CLADHIGSLIPGIEKSLNDKSST--SNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 460 ~l~~~~~~lv~~l~~~l~d~~~~--~~~~~~al~~l~~l~~~~ 500 (1215)
+... +. -.|.+...+-|++.. ...+..-..++..+.+.+
T Consensus 424 g~~~-i~-~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 424 GQRE-IC-SSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HHHH-HH-hCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3222 11 124445555455432 234444455566665543
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.97 E-value=0.00031 Score=83.34 Aligned_cols=615 Identities=14% Similarity=0.118 Sum_probs=302.9
Q ss_pred HHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhccCchhhHHHHHHh
Q 000941 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHTS 127 (1215)
Q Consensus 50 ~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~ 127 (1215)
.++....++++.||.+|.+.+.++-. ++ .+-..|++...+. +-..|.+|..-|+.++++--.
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~--~~----~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~---------- 71 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLEL--TE----GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWS---------- 71 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhcccc--ch----HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCC----------
Confidence 34566678999999999988877643 12 2444555555433 446799999888887764322
Q ss_pred HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 000941 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA 207 (1215)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~ 207 (1215)
...+..++.. .+.+ .....+.+.++..+.+++..+|+.+..+++.++...-.+.+.
T Consensus 72 ---~~~E~fr~~~---~~~e------------------~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~Wp 127 (1005)
T KOG2274|consen 72 ---PNFEAFRYPL---IVSE------------------EVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWP 127 (1005)
T ss_pred ---ChHhhccCCC---cccH------------------HHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhH
Confidence 2222222221 0111 122334455556666778899999999999999998888899
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHH-----HHHHHHH
Q 000941 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYS-----LQALESF 281 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~a-----l~~l~~l 281 (1215)
++++.+++.+.+.+. ...-.+++++..+..-.-..-.+++ +...+.+.....-......-.|-.+ +..+-.+
T Consensus 128 Elv~~i~~~l~~~n~--n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~l 205 (1005)
T KOG2274|consen 128 ELVPFILKLLSSGNE--NSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTL 205 (1005)
T ss_pred HHHHHHHHHHhccch--hhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHH
Confidence 999999999987554 3445777888777765421111111 1122222211110001122222111 1222222
Q ss_pred HHhCh----hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHH
Q 000941 282 LLRCP----RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1215)
Q Consensus 282 ~~~~~----~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li 357 (1215)
+..+. ...+.|+.++++..+..+.+-=. -.+...|..|..-.+++..+.
T Consensus 206 i~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~---------------------------~~~g~~~~~~~eilk~~t~l~ 258 (1005)
T KOG2274|consen 206 ITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ---------------------------RNDGSDFSLRMEILKCLTQLV 258 (1005)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------------------------ccccchHHHHHHHHHHHHHHH
Confidence 22222 12334555555544443321000 001134889999999999999
Q ss_pred hhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhc
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFI-ELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLR 436 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~ 436 (1215)
+.+|....++....++.. +++-......+. .-+.+++..-..+.+ ..+....+...+-.++..+...+.
T Consensus 259 ~nfp~~~~~~~~~~~~~v--------w~~~~~~~~~yir~~V~~~e~~~~~~~d--sd~e~~~~~~l~i~i~eF~s~i~t 328 (1005)
T KOG2274|consen 259 ENFPSLINPFMMGMFSIV--------WQTLEKILAVYVRESVNGTEDSYDARYD--SDPEEKSVETLVIQIVEFLSTIVT 328 (1005)
T ss_pred HhhHHhhhHHHHhhhhHH--------HHHHHHHHhhhhhhhccccccCcccccC--CchhhhChHHhhhhHHHHHHHHHH
Confidence 998866655544444432 111111111110 001111111011011 011111222223333333222221
Q ss_pred ccCh--hhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhH
Q 000941 437 EKSI--KTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALS 513 (1215)
Q Consensus 437 ~~~~--~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~ 513 (1215)
.... ........++..++.. -.+.. .+..-..-......|.......++.+-..+-.++...+.+...|..+..-
T Consensus 329 ~~~~~~ti~~~l~~lI~~~v~y--~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~ 406 (1005)
T KOG2274|consen 329 NRFLSKTIKKNLPELIYQLVAY--LQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAG 406 (1005)
T ss_pred HHHHHHHhhhhhHHHHHHHHHH--HHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHH
Confidence 1000 0000000001111100 00111 00000001111122222223455555555555554444333333222211
Q ss_pred HHHHHH-----hcC-CchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 000941 514 SPVLAA-----VGE-RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587 (1215)
Q Consensus 514 p~l~~~-----l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~ 587 (1215)
..+... +++ .+|++.+.-+..... .+. +.....++..++..+..++.-++. +..--+|+.+++.
T Consensus 407 ~~~~es~at~~~~~~~~wk~qea~l~a~~~----~~~-----~~~~dd~l~~l~~~~~~~l~~~e~-P~Ll~Ra~~~i~~ 476 (1005)
T KOG2274|consen 407 RHFQESQATYLFNNESWWKIQEALLVAAES----VRI-----DDANDDKLIELTIMIDNGLVYQES-PFLLLRAFLTISK 476 (1005)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhh----ccc-----CcchHHHHHHHHHHHHhhcccccC-HHHHHHHHHHHHH
Confidence 112111 111 233433332222211 221 223456677777777777765554 4555589999997
Q ss_pred HHHhccCcccchhhhhHHHHHHhhccc---hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000941 588 VISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLG 664 (1215)
Q Consensus 588 l~~~~~~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~ 664 (1215)
+...+.. -.+.+...+...+..+.-+ ..|..|++++.-.+.. .-+.+..+.++.-|..+..+....+-..-++
T Consensus 477 fs~~~~~-~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~L~qlas~~s~evl~llmE 552 (1005)
T KOG2274|consen 477 FSSSTVI-NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDGLLQLASKSSDEVLVLLME 552 (1005)
T ss_pred HHhhhcc-chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHHHHHHHcccccHHHHHHHHH
Confidence 7665421 1123444444444555433 3566666666555421 2346778888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHhhhhc--CCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcc-
Q 000941 665 TMNSLVVAYGDKIGASAYEVIIVELSTLI--SDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSL- 741 (1215)
Q Consensus 665 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~- 741 (1215)
+|+..+.--++ +....-..+.+....+. .++|+++...+.+++..+++.. .....+....+|.++..+..+.
T Consensus 553 ~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~----~~~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 553 ALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA----ANYGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred HHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH----HhhcchHHHHHHHHHHHHcCccc
Confidence 88887754332 33222233444444333 4678899999999888888742 1234467789999999987653
Q ss_pred c-chhhhHHHHHHHHHHHhhcCCC
Q 000941 742 L-QGQALVALQSFFAALVYSANTS 764 (1215)
Q Consensus 742 l-~~~~l~~l~~~~~~l~~~~~~~ 764 (1215)
. ...-+.....++..+.+..++.
T Consensus 628 ~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 628 KAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred ccCchhhHHHHHHHHHHHhcCCCC
Confidence 1 1111233456666666666443
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.5e-07 Score=106.69 Aligned_cols=359 Identities=16% Similarity=0.179 Sum_probs=233.6
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1215)
+.+...+.+++.+.+--+..+++.+.+.-..+....-+..-++|++++.+...+ ++.++.+|..+|..++......-.-
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccc
Confidence 333444445555444455566666665333334444455678999999997654 5889999999999987654432111
Q ss_pred -hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh
Q 000941 167 -DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1215)
Q Consensus 167 -~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1215)
-....++.+...+.+++..|++.|+.|||.++...+.- .+ ...++.++..+.++.. ....+.+.-++..+|+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCC
Confidence 12345677889999999999999999999999765442 12 3467778888776543 357788999999999965
Q ss_pred -hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCccc
Q 000941 242 -GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD 320 (1215)
Q Consensus 242 -~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~ 320 (1215)
|.-=...+..++|.+...+. ..|+++...+.+++..+...-++.
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~-------------------------------- 271 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEK-------------------------------- 271 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHH--------------------------------
Confidence 32111235667888888777 468888777777765443221100
Q ss_pred ccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000941 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 321 ~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
+..++ -..+.|.|++.+...+..|+..++++++-++..
T Consensus 272 --------------------------------iq~vi----------~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 272 --------------------------------IQMVI----------DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred --------------------------------HHHHH----------HccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 11111 113567777777888888888887777775432
Q ss_pred hcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhc-ccChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhc
Q 000941 401 TGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLN 477 (1215)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~-~~~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~ 477 (1215)
.. ..-+..+ ...++.+...+. .+....|..|+.+++.+....+..... .-..++|.+...|.
T Consensus 310 ~d---------------~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 310 SD---------------EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cH---------------HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 11 0111111 444566666666 444457888999999998755544444 33467888998887
Q ss_pred CCCCcchhHHHHHHHHHHHhccCCCCcchhh--hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhc
Q 000941 478 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPY--IKALSSPVLAAVGERYYKVTAEALRVCGELVRVL 542 (1215)
Q Consensus 478 d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~ 542 (1215)
... -+.|.||..+++.+..+..++.. .| -..+++++...+.-++.++..-++.+++.+.+..
T Consensus 375 ~~e--f~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 375 TAE--FDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred ccc--hHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 543 57889999999988766543222 23 2347788887776566688888888888887653
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.94 E-value=2.9e-06 Score=99.31 Aligned_cols=380 Identities=19% Similarity=0.279 Sum_probs=248.8
Q ss_pred HHHHHHhcCCCcc--hhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-----cccchhHHHHHHHHHHhhccCh
Q 000941 7 AAILEKITGKDKD--FRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-----VAGDVSGLAVKCLAPLVKKVSE 79 (1215)
Q Consensus 7 ~~ll~~~~~~d~d--~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-----~~~~Vq~~A~~~l~~l~~~~~~ 79 (1215)
..++..+.+.+++ .++.-.-+....+. ...+..+.++..++..+.. ++.+.-.....++..++.+...
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls-----~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALS-----TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHH-----CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccc
Confidence 4567777666654 55554333333332 2344556666666666652 2556677888888888765433
Q ss_pred hh------H--H-HHHHHHHHHhcCCC-------cchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHH-----hhhhc
Q 000941 80 PR------V--V-EMTDKLCIKLLNGK-------DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLT-----KGITL 138 (1215)
Q Consensus 80 ~~------~--~-~lv~~L~~~~~~~~-------~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~-----~~l~~ 138 (1215)
.. + . .+++.++..+.+.. +..-+..+..++.++..++. +-+..+++.+...++ ..++.
T Consensus 77 ~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~-~~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 77 DKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP-EKQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHccccccCCCCc
Confidence 22 1 2 27777777664321 12234556667777777776 444455555555444 11111
Q ss_pred cCC-ChhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHH
Q 000941 139 KDM-NTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDD-LLAKATIEVV 214 (1215)
Q Consensus 139 ~~~-~~~v~~~al~~L~~l~~~~g~~l~-~~~~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll 214 (1215)
... ........+-++..++....+... +....+++.++....+ +++..|..+.++++.++.-.++. .++.++..+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~ 235 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLL 235 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHH
Confidence 110 112344455566666666666543 4555677777766544 34789999999999999886444 5777777777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH
Q 000941 215 RNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294 (1215)
Q Consensus 215 ~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1215)
..+.... ....+..+++.+..+.++.=-|-.|.-..++..+++.+. ++++...+..+|+-++.-.+..
T Consensus 236 ~~~~~~~-~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~-----~~~~g~~aA~~f~il~~d~~~~------ 303 (415)
T PF12460_consen 236 QSISSSE-DSELRPQALEILIWITKALVMRGHPLATELLDKLLELLS-----SPELGQQAAKAFGILLSDSDDV------ 303 (415)
T ss_pred hhhcccC-CcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC-----ChhhHHHHHHHHhhHhcCcHHh------
Confidence 7762222 235677889999999998766767777778888888775 3666666666665544321100
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHH
Q 000941 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPK 374 (1215)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~ 374 (1215)
++ +...+-++.| +-..+|..++|.
T Consensus 304 ---------l~--------------------------------------~~~~a~vklL---------ykQR~F~~~~p~ 327 (415)
T PF12460_consen 304 ---------LN--------------------------------------KENHANVKLL---------YKQRFFTQVLPK 327 (415)
T ss_pred ---------cC--------------------------------------ccccchhhhH---------HhHHHHHHHHHH
Confidence 00 0000111111 114588899999
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 375 Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
|++.+++.+...|...+.++..+++++ |...+..++|.+++.+.+.|.-++..++.+++.+|..+.
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~v--------------P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKNV--------------PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhhC--------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999998887778888899999999876 666788999999999999998888889999999999999
Q ss_pred HhCchhhhhhhhhhhHHHHH
Q 000941 455 VVLPDCLADHIGSLIPGIEK 474 (1215)
Q Consensus 455 ~~~~~~l~~~~~~lv~~l~~ 474 (1215)
...+..+.+|+..++|.+.+
T Consensus 394 ~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 394 EEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HcCHHHHHHHHHHHHHHHHh
Confidence 98888999999999998875
No 45
>PRK09687 putative lyase; Provisional
Probab=98.94 E-value=3.1e-08 Score=108.05 Aligned_cols=221 Identities=17% Similarity=0.168 Sum_probs=160.1
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHh-ccCcccchhHHHHHHHHHHhhccChhhHHHH
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-LDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~-L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~l 85 (1215)
..+..-++|.|+.+|.+|..-|.. +.. .......+++.|... ++|++++||..|+..||.+-..-. ......
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~-lg~-----~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~~~~a 129 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQ-LGM-----AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LYSPKI 129 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cCC-----CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-ccchHH
Confidence 334444689999999999988844 332 111245677777766 789999999999999999853222 123566
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
+..|...+.+++..+|..+..+|..+ +. ...+|.|+..+.+. ++.||..|...||.+ +
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~----~~--------~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~----~---- 187 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVI----ND--------EAAIPLLINLLKDP--NGDVRNWAAFALNSN----K---- 187 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhcc----CC--------HHHHHHHHHHhcCC--CHHHHHHHHHHHhcC----C----
Confidence 77777777788888999999888532 21 33567788888775 578999999999876 1
Q ss_pred hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhh
Q 000941 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1215)
Q Consensus 166 ~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1215)
...+...+.++..+.++++.||+.|+.+|+.+.. ...++.+++.+.++. .+..++.++|.+..
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~Li~~L~~~~----~~~~a~~ALg~ig~------ 250 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSVLIKELKKGT----VGDLIIEAAGELGD------ 250 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHHHHHHHcCCc----hHHHHHHHHHhcCC------
Confidence 1234667778888899999999999999988653 257888888887644 45566777776643
Q ss_pred ccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHH
Q 000941 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1215)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1215)
+..+|.+.+.++. +.|.+++..+.++|+
T Consensus 251 ----~~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 ----KTLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ----HhHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 3577788777753 468889988887775
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.2e-07 Score=105.45 Aligned_cols=352 Identities=16% Similarity=0.181 Sum_probs=244.0
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccC-CCChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccChhhH-
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRV- 82 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~~~~- 82 (1215)
....++++.|.|+..++-|+..+++.++++.. .++.-....+++.+...|. +.++.+|-.|.-+|..++..-.+..-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 56778889999999999999999999988653 2333444568999999996 78899999999999999975444221
Q ss_pred ---HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHH
Q 000941 83 ---VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 83 ---~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1215)
..-++.+..++.+++.++++-+.-||+.+....+. +..-++ ..+++.|+..+.... .-.....+..+|+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~--~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD--CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNLCR 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH--HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHHHc
Confidence 13466678888889999999999999999877653 222222 235567777776543 12466678889999987
Q ss_pred Hhhhhhh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000941 159 KFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1215)
Q Consensus 159 ~~g~~l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1215)
.--+.=. .....+++.+...+.+.++.|..-|+.+++.++..-++.+ -..+++.++..|.+++. .++-.++.+
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRa 302 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRA 302 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhh
Confidence 6533211 3567889999999999999999999999999998776663 24688999999988765 456678999
Q ss_pred HHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhccCCCC
Q 000941 234 VGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNF 310 (1215)
Q Consensus 234 l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~ 310 (1215)
+|.|+-+.... ...+ ...+|.+...+.. ...+-+|..|.+++..+....++.+...++ .++|.++..+...
T Consensus 303 iGNIvtG~d~Q-Tq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--- 376 (514)
T KOG0166|consen 303 IGNIVTGSDEQ-TQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--- 376 (514)
T ss_pred ccceeeccHHH-HHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---
Confidence 99987654322 1111 3345666555552 123448999999999999988876665443 5667777766411
Q ss_pred CCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHHH-HHHHHHHhhhcccchhHHH
Q 000941 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYE-EACPKLIDRFKEREENVKM 388 (1215)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~~-~i~p~Li~~~~d~e~~Vr~ 388 (1215)
+ .++|+.|+-+++.+..+ .++.+.-+++ .+++.+...+.-.+..+-.
T Consensus 377 -----------------------e--------f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 377 -----------------------E--------FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred -----------------------c--------hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 0 37899999999977654 4555443332 3566666666433333333
Q ss_pred HHHHHHHHHHH
Q 000941 389 DVFNTFIELVR 399 (1215)
Q Consensus 389 ~~~~~l~~l~~ 399 (1215)
.++.++..+++
T Consensus 426 v~Ld~l~nil~ 436 (514)
T KOG0166|consen 426 VALDGLENILK 436 (514)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 47
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2e-05 Score=91.48 Aligned_cols=485 Identities=17% Similarity=0.203 Sum_probs=275.9
Q ss_pred HHHhccCcccchhHHHH-HHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHh
Q 000941 51 VVQQLDDVAGDVSGLAV-KCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLT 129 (1215)
Q Consensus 51 ll~~L~D~~~~Vq~~A~-~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~ 129 (1215)
|.++|++.+..-.--|. +.|+.+++ ...+..+.+....++.+.+.+++...-.-|-...++-|.-.+. =+
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~---G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL------SI 110 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK---GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL------SI 110 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee------eH
Confidence 33455554433334444 44444443 2336677778888887777776664444444445544431100 01
Q ss_pred HHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 000941 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1215)
Q Consensus 130 p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1215)
..+-.+|.++ ++.+|..|+.+|+.+- +.--.|-++-.+-++..|+.+-|||.|..||..+-..-++. ..++
T Consensus 111 ntfQk~L~Dp--N~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k~qL 181 (968)
T KOG1060|consen 111 NTFQKALKDP--NQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-KDQL 181 (968)
T ss_pred HHHHhhhcCC--cHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-HHHH
Confidence 2333456664 5899999999998651 11123444555556677888999999999999887654443 3455
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1215)
++.+-..|.+.. +-+...++.+|..+|-.--+-+.+|...+..++.+. +|--. .-
T Consensus 182 ~e~I~~LLaD~s--plVvgsAv~AF~evCPerldLIHknyrklC~ll~dv--------deWgQ--vv------------- 236 (968)
T KOG1060|consen 182 EEVIKKLLADRS--PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV--------DEWGQ--VV------------- 236 (968)
T ss_pred HHHHHHHhcCCC--CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch--------hhhhH--HH-------------
Confidence 554444444433 245666667776664221123444555554444321 11000 01
Q ss_pred cccHHHHHHHHHHHhcc---CCCCCCCCCCCcccccccccchh--hhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhh
Q 000941 290 SSYCDEILHLTLEYLSY---DPNFTDNMEEDSDDEAYEEEEED--ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1215)
Q Consensus 290 ~~~l~~ii~~~l~~l~~---dpn~~~~~d~d~~~~~~~~~~d~--~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l 364 (1215)
++..+.+|.+. +|+..+.+-++... +--..+. +...-|. ..|| +
T Consensus 237 ------lI~mL~RYAR~~l~~P~~~~~~~e~n~~--~~~~~~~~~~~~~P~~----------------------~d~D-~ 285 (968)
T KOG1060|consen 237 ------LINMLTRYARHQLPDPTVVDSSLEDNGR--SCNLKDKYNEIRTPYV----------------------NDPD-L 285 (968)
T ss_pred ------HHHHHHHHHHhcCCCccccccccccCcc--cccccccccccCCCcc----------------------cCcc-H
Confidence 23333444332 45432111110000 0000000 0000111 1111 1
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHH
Q 000941 365 SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV 444 (1215)
Q Consensus 365 ~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~ 444 (1215)
..+++..-|.| ..++..|-.++++++..+. | ......|++++.+.|+++. .+|.
T Consensus 286 ~lLL~stkpLl----~S~n~sVVmA~aql~y~lA-----------------P----~~~~~~i~kaLvrLLrs~~-~vqy 339 (968)
T KOG1060|consen 286 KLLLQSTKPLL----QSRNPSVVMAVAQLFYHLA-----------------P----KNQVTKIAKALVRLLRSNR-EVQY 339 (968)
T ss_pred HHHHHhccHHH----hcCCcHHHHHHHhHHHhhC-----------------C----HHHHHHHHHHHHHHHhcCC-cchh
Confidence 22333333433 5677888888887776653 3 2246678889998887654 4888
Q ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCc
Q 000941 445 GAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY 524 (1215)
Q Consensus 445 ~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~ 524 (1215)
..+.-+..++..-|+-|.+|+..+.- . +.+...+++=-+..|..++... .+..|++.+..++.+.+
T Consensus 340 vvL~nIa~~s~~~~~lF~P~lKsFfv------~-ssDp~~vk~lKleiLs~La~es-------ni~~ILrE~q~YI~s~d 405 (968)
T KOG1060|consen 340 VVLQNIATISIKRPTLFEPHLKSFFV------R-SSDPTQVKILKLEILSNLANES-------NISEILRELQTYIKSSD 405 (968)
T ss_pred hhHHHHHHHHhcchhhhhhhhhceEe------e-cCCHHHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHHhcCc
Confidence 88888888888888888888877641 1 1112334444456666666542 37889999999998877
Q ss_pred hHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhH
Q 000941 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACL 604 (1215)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l 604 (1215)
..+++.++.++|.++...+. .-...+..++..+.+. +..|-..|...+-.++..-+. ...+++
T Consensus 406 ~~faa~aV~AiGrCA~~~~s-----------v~~tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~----~h~~ii 468 (968)
T KOG1060|consen 406 RSFAAAAVKAIGRCASRIGS-----------VTDTCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPA----EHLEIL 468 (968)
T ss_pred hhHHHHHHHHHHHHHHhhCc-----------hhhHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChH----HHHHHH
Confidence 78999999999988765433 3345566666666644 566777778887777654321 333445
Q ss_pred HHHHHhhc---cchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000941 605 PVLVDRMG---NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVV 671 (1215)
Q Consensus 605 ~~L~~~L~---~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~ 671 (1215)
..|.+.+. -...|...+|.+|+.+.- .....++++..+..-....+..+|...+.....+..
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 44444442 233455567777777643 244567777777777778888889888877776653
No 48
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=0.00036 Score=81.50 Aligned_cols=278 Identities=14% Similarity=0.151 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc--CCCCcchhhhhhhHHHHHHH
Q 000941 442 TKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS--HSPPVFHPYIKALSSPVLAA 519 (1215)
Q Consensus 442 ~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~--~~~~~~~~~l~~l~p~l~~~ 519 (1215)
.|.....++++.+.+-- ..+.-+.+-..+.+.++|.+ +--++.++...+..+++. ..++.|.||++.+...+.+.
T Consensus 503 iRRRVa~ilg~Wvsvq~--~~e~k~l~Y~a~lnLL~d~~-D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl 579 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQ--KLELKPLLYCAFLNLLQDQN-DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL 579 (978)
T ss_pred HHHHHHHHHhhhhheec--hHhHHHHHHHHHHHhcCccc-cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence 56666778888876421 11122222233444555543 356788888888888764 34578889998888888777
Q ss_pred hcCC-chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccc
Q 000941 520 VGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598 (1215)
Q Consensus 520 l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~ 598 (1215)
++.- ....+...+.+++.++...++ .+.||...+++.+=..=.-....+-+|.+-+.++-.++..+|+.-.+
T Consensus 580 l~~~~e~Dtk~~VL~~ls~lI~r~~e-------~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~ 652 (978)
T KOG1993|consen 580 LKAVEECDTKTSVLNLLSTLIERVSE-------HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFE 652 (978)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCcc
Confidence 6421 123345578888888876643 45566665554332222222345778888899999999999876545
Q ss_pred hhhhhHHHHHHhhcc--ch---hHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000941 599 ELPACLPVLVDRMGN--EI---TRLTAVKAFAVIA-ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 599 ~~~~~l~~L~~~L~~--e~---~r~~a~~al~~i~-~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1215)
..+-++|++--...- +. .-.-++.-.+... .++ .+.|-+-.+.|.+...+..+...++.. +..+..-+--
T Consensus 653 ~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~---~l~p~ll~L~p~l~~~iE~ste~L~t~-l~Ii~sYilL 728 (978)
T KOG1993|consen 653 FYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ---KLTPELLLLFPHLLYIIEQSTENLPTV-LMIISSYILL 728 (978)
T ss_pred chHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc---ccCHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhh
Confidence 556666666433211 11 1122333344433 232 245666677788888887776666633 2222221110
Q ss_pred hCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHH
Q 000941 673 YGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALAL 736 (1215)
Q Consensus 673 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~l 736 (1215)
-+..+...+...+...+..++.+=.-...++.+.++..+++. .|--+..+.++++|.++.-
T Consensus 729 d~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t---~~il~~~~~~~~L~~lf~~ 789 (978)
T KOG1993|consen 729 DNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT---NPILGSLLFSPLLSRLFLS 789 (978)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh---hHHHHhhhcchhhHHHHHH
Confidence 011122334444555554444332223344556666666653 2322233444555544433
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=1.4e-05 Score=95.51 Aligned_cols=351 Identities=15% Similarity=0.186 Sum_probs=222.0
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh-hh
Q 000941 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-ND 167 (1215)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~-~~ 167 (1215)
++..+.+.+.+.-+.++..|+.+++...... ....+.|.|..+|..+ ++.||.-++..++.+++....... -.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~----l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDS----LLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 5566655555555677788999888765422 2556667788888865 689999999998888766554332 13
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-----TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 168 ~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-----~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
...+++.++.++.+++..|.+.|+.+|..++..-. .++.+ +..+...+.+++ +..|..+++++..++...+
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEIASHSP 192 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCH
Confidence 36688889999999999999999999999997532 22333 556666655533 3577778899999988776
Q ss_pred hhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH--HHHHHHHHHhccCCCCCCCCCCCcc
Q 000941 243 YRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSD 319 (1215)
Q Consensus 243 ~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~--~ii~~~l~~l~~dpn~~~~~d~d~~ 319 (1215)
.-+.-.. ..+++.++..+. ++|.-++-.+++.+..++. .+.. ..|+. .+++.+...+... ++
T Consensus 193 ~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~-------~~--- 257 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDS-------EE--- 257 (503)
T ss_pred HHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhcc-------cc---
Confidence 5543222 248888888776 4566688899999999988 4432 33443 3555555555310 00
Q ss_pred cccccccchhhhcCCCCCCCCccHHHHH-HHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 000941 320 DEAYEEEEEDESANEYTDDEDASWKVRR-AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1215)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dd~d~swkvR~-~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~ 398 (1215)
| .+. -.+.- ...+..+.+....|..+...|+.++..+.+.+...+...+..++.+++.+.
T Consensus 258 -------------d-----p~~-~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 258 -------------D-----PRL-SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred -------------C-----Ccc-cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 0 000 01111 112445555554555555566666666665566677888888999998876
Q ss_pred HHhcccCCCcCCCCCCChhhHH----HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhH----
Q 000941 399 RQTGNVTKGQIDNNELNPRWLL----KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIP---- 470 (1215)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~L----~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~---- 470 (1215)
.... |. ..| .+.+..+++.+...........|..++..|..+....+..-.+.+..+..
T Consensus 319 st~~------------G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~ 385 (503)
T PF10508_consen 319 STVE------------GK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYE 385 (503)
T ss_pred CCHH------------HH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4321 11 123 23456667777777766666789999999999976544311112222232
Q ss_pred ---------HHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 471 ---------GIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 471 ---------~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
.+...++.+. +++|..++.++..++.
T Consensus 386 ~~~~~~~~~~l~~~~~qPF--~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 386 SLSGSPLSNLLMSLLKQPF--PELRCAAYRLLQALAA 420 (503)
T ss_pred HhcCCchHHHHHHHhcCCc--hHHHHHHHHHHHHHhc
Confidence 3333333332 6788888888888765
No 50
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.79 E-value=0.0012 Score=78.48 Aligned_cols=236 Identities=11% Similarity=0.115 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhccc-ChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 422 QEVSKIVKSINRQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 422 ~~~p~i~~~l~~~L~~~-~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
+.+..++..+...+... .+..--.++.++..+..+.+-. .+.+..++.....++.- ...+.+|+.|+..+...+
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~-~~~~~~fl~~~v~~l~~-~~~~~~ki~a~~~~~~~~--- 519 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN-PQLLQHFLNATVNALTM-DVPPPVKISAVRAFCGYC--- 519 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhcc-CCCCchhHHHHHHHHhcc---
Confidence 33444555555554433 2322224566666655542211 11233334444444432 223567887777666555
Q ss_pred CCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhc-HHHHHHHHHHHhhccCCCHHHHH
Q 000941 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPY-VQPIYNAIMSRLTNQDQDQEVKE 579 (1215)
Q Consensus 501 ~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~d~~~~Vr~ 579 (1215)
++..+.++.+.++..+.+...+....+-.--+.++...++. .| .|..- -..+.|.++........|+-|-.
T Consensus 520 ~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dp-------ef~as~~skI~P~~i~lF~k~s~DP~V~~ 591 (1005)
T KOG2274|consen 520 KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DP-------EFAASMESKICPLTINLFLKYSEDPQVAS 591 (1005)
T ss_pred CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Ch-------hhhhhhhcchhHHHHHHHHHhcCCchHHH
Confidence 55678888889998888887665444433333344444432 22 12111 11244444444443344666776
Q ss_pred HHHHHHHHHHHhccCcccchhhhhHHHHHHhhccch------hHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHHHHHH-
Q 000941 580 CAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI------TRLTAVKAFAVIAASPLHIDL-TCVLEHVIAELTAFL- 651 (1215)
Q Consensus 580 ~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~------~r~~a~~al~~i~~s~~~~~~-~~~l~~~l~~L~~~L- 651 (1215)
.+-.++-.++... ...+|....++|-++.-+..+. ....++..|+.+.... +.++ ...+..+.|.+....
T Consensus 592 ~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 592 LAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLLICYAFPAVAKITL 669 (1005)
T ss_pred HHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC-CCCccHHHHHHHhHHhHhhee
Confidence 6666666655432 3345677788888887764332 3456788888777432 2233 234455666665554
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 000941 652 RKANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 652 ~~~~~~lr~~al~~L~~l~~~ 672 (1215)
-+.|...-+++-+||..++..
T Consensus 670 HsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 670 HSDDHETLQNATECLRALISV 690 (1005)
T ss_pred ecCChHHHHhHHHHHHHHHhc
Confidence 355667788888999988876
No 51
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.79 E-value=0.0021 Score=80.68 Aligned_cols=650 Identities=14% Similarity=0.155 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 420 LKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 420 L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
+...+...++.|...+.++...+|-.|+.+++.+++.-|..+. .+.+-.++..-+.|.+ ..+|..|+.++|.++-.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Dss--asVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSS--ASVREAALDLVGRFVLS 885 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccch--hHHHHHHHHHHhhhhhc
Confidence 4566788888888899988888999999999999987655443 3444556666777765 68999999999999876
Q ss_pred CCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHH
Q 000941 500 HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKE 579 (1215)
Q Consensus 500 ~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~ 579 (1215)
+. .++.+.+..+...+.|..--|+-.++..+.++|... .+|... ..+.-.++.+. +|....|+.
T Consensus 886 ~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~--------pdf~~i-~~~cakmlrRv--~DEEg~I~k 949 (1692)
T KOG1020|consen 886 IP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET--------PDFSKI-VDMCAKMLRRV--NDEEGNIKK 949 (1692)
T ss_pred cH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC--------CChhhH-HHHHHHHHHHh--ccchhHHHH
Confidence 53 367778888888889998899999999999998753 233332 22333333433 344455777
Q ss_pred HHHHHHHHHHHhccCcccchhh-hhHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH-HHH-Hhhh
Q 000941 580 CAISCMGLVISTFGDNLGAELP-ACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA-FLR-KANR 656 (1215)
Q Consensus 580 ~Ai~~lg~l~~~~~~~l~~~~~-~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~-~L~-~~~~ 656 (1215)
-+...+-.+ |+.|.-. ..-+-....+..+.-...+...++ ..|+++++..+.. .+- ....
T Consensus 950 Lv~etf~kl------WF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~-----------~~~~eqLl~~ilk~~~~~~~~~ 1012 (1692)
T KOG1020|consen 950 LVRETFLKL------WFTPVPEVNDQPAKARKISLEVDVVMSQVDLM-----------NDWLEQLLDHILKFYLLKTMKE 1012 (1692)
T ss_pred HHHHHHHHH------hccCCCcccccHHHHHhhHHHHHHHHHHHHHh-----------cChHHHHHHHHHHHHHhhhhhh
Confidence 666665543 3443111 222222222222211111111111 3445554433322 111 1111
Q ss_pred HHHHHHHHHHHH---HHHHhCCCCCcchHHHHHHHhh-hh-cCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHH
Q 000941 657 ALRQATLGTMNS---LVVAYGDKIGASAYEVIIVELS-TL-ISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLP 731 (1215)
Q Consensus 657 ~lr~~al~~L~~---l~~~~~~~~~~~~~~~~l~~l~-~~-l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~ 731 (1215)
+++..+..++.. |..++ +..-+.++- .. ..+.+.......+.+|..+++. .|.-.. ...+-
T Consensus 1013 ~~~~v~~~~v~~~~~L~~~c--------l~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fski---rP~Llt---~khv~ 1078 (1692)
T KOG1020|consen 1013 SVKPVALAKVTHVLNLLTHC--------LVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKI---RPQLLT---KKHVI 1078 (1692)
T ss_pred hhhHHHHhhcchHHHHHHHH--------HHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhc---Cchhcc---HHHHH
Confidence 222222222221 11111 000011111 01 1122333344566677777763 554221 12222
Q ss_pred HHHHHhhhcc--c-chhhhHHHHHHHHHHHhhc---CCChHHHHH-HHhccCCCCCCCcchhhhhhhhHHHHHHHHHhh-
Q 000941 732 QALALIKSSL--L-QGQALVALQSFFAALVYSA---NTSFDTLLD-SLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLA- 803 (1215)
Q Consensus 732 ~l~~ll~s~~--l-~~~~l~~l~~~~~~l~~~~---~~~~~~l~~-~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~- 803 (1215)
.+.-++.+.. . ....++.+...++.+..-. ...|-.-++ .|+.-+-..+. .. ....-.|+|.++..
T Consensus 1079 tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~-----a~-V~~~vsCl~sl~~k~ 1152 (1692)
T KOG1020|consen 1079 TLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM-----AT-VVEAVSCLGSLATKR 1152 (1692)
T ss_pred HhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch-----HH-HHHHHHHHHHHHhhh
Confidence 3333343331 0 1122244444444443321 011111111 11111100000 01 11122477776543
Q ss_pred -cCCcchhhHHHHHHHHh---cCC--Cc------hhhHHHHHHHhhhhccCCCCCc-----------cchHHH----HHH
Q 000941 804 -AGDQKCSSTVKMLTDIL---KDD--SS------TNSHLALLCLGEIGRRKDLSSH-----------EHIENV----IIE 856 (1215)
Q Consensus 804 -~~~~~~~~~l~~~~~~l---~~~--~~------~~~~lal~~lgei~~~~~~~~~-----------~~l~~~----ll~ 856 (1215)
.|-..+......|...+ +.+ .+ ..-.=.+.++|-+.||.+.... +.+.+. +.-
T Consensus 1153 ~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~ 1232 (1692)
T KOG1020|consen 1153 TDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMY 1232 (1692)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHH
Confidence 11112233444444332 222 11 1123467789999998765310 122222 222
Q ss_pred hcCCCchhHhhHHHHHHHhhhhcCcccch-HHHHHHhhc----c--cch-hHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 000941 857 SFQSPFEEIKSAASYALGNIAVGNLSKFL-PFILDQIDN----Q--QKK-QYLLLHSLKEVIVRQSVDKAEFQDSSVEKI 928 (1215)
Q Consensus 857 ~l~~~~e~vR~aAa~aLG~l~~~~~~~~l-p~il~~l~~----~--~~~-~~~~l~alke~i~~~~~~~~~~~~~~~~~i 928 (1215)
+....+.++|..|..+||.++..+++-+. +.+...+.. + +.. +..+++.+-..+..... .
T Consensus 1233 f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~----~-------- 1300 (1692)
T KOG1020|consen 1233 FSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEK----K-------- 1300 (1692)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH----H--------
Confidence 33566799999999999999999988765 333333321 1 111 33344444433322100 0
Q ss_pred HHHHHhhccCCccchhhHHHHHhhhccccC------------CCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchh
Q 000941 929 LNLLFNHCESEEEGVRNVVAECLGKIALIE------------PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKI 996 (1215)
Q Consensus 929 ~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~------------~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~ 996 (1215)
+. ..........-++-++.+.-+. -..|++.+.+..-+.+...|-+++..++-++..+.-
T Consensus 1301 ----l~--~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV-- 1372 (1692)
T KOG1020|consen 1301 ----LR--NKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV-- 1372 (1692)
T ss_pred ----HH--hcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC--
Confidence 00 0011111222222223222211 124777777777788889999999999988876631
Q ss_pred hhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChh
Q 000941 997 DEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLE 1076 (1215)
Q Consensus 997 ~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~ 1076 (1215)
.| ..|+|.++.+=.|+...+|..|...|--+=...+..|-..+.+=+..-|.--..-.+.-+ -..+-|......+-
T Consensus 1373 hP--~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~lsf~lq~~~~~~~~-~~~~~fr~~d~ss~- 1448 (1692)
T KOG1020|consen 1373 HP--VHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLSFKLQQHIDEKTY-KPVRGFRLPDHSSS- 1448 (1692)
T ss_pred Cc--cchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhh-cccccccCcccchh-
Confidence 11 257888887777999999999998888766677777766665432222211000000000 01111221111122
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCC--cchhHhhHHHH--HHHH---HhhChhhHHHhHHHhhHHHHhh
Q 000941 1077 LRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED--HYDVKMPCHLI--LSKL---ADKCPSAVLAVLDSLVDPLQKT 1149 (1215)
Q Consensus 1077 ~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D--~~di~~~~~~~--l~~l---~~~~p~~~~~~l~~l~~~l~~~ 1149 (1215)
+-...+|+++... +.....|+ +-+..+..| ...+..+-|.. |..+ ..-.|-.++..+|..+.....+
T Consensus 1449 ---tl~s~ly~~~r~n--k~~rr~fl-~si~~lfd~~~ks~vs~~~yiadnLA~fPyvsqdEPLyl~~tID~~la~~g~~ 1522 (1692)
T KOG1020|consen 1449 ---TLKSNLYKSIRGN--KQIRRSFL-QSILDLFDDPNKSVVSFLLYIADNLANFPYVSQDEPLYLMHTIDLTLARLGEV 1522 (1692)
T ss_pred ---HHHhccHHHHhhh--HHHHHHHH-HHHHHhccCCCcchhhhHHHHHhhhccCCcccccchHHHHHHHHHHHHHhhHH
Confidence 3335566776664 44456677 577777666 34444433322 3322 2234556667777777777766
Q ss_pred hcccCCc
Q 000941 1150 INFKPKQ 1156 (1215)
Q Consensus 1150 l~~k~k~ 1156 (1215)
+....|+
T Consensus 1523 ll~~~K~ 1529 (1692)
T KOG1020|consen 1523 LLDEFKE 1529 (1692)
T ss_pred HHHHHHH
Confidence 6544433
No 52
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.75 E-value=0.00065 Score=76.28 Aligned_cols=466 Identities=15% Similarity=0.165 Sum_probs=252.5
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch
Q 000941 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1215)
Q Consensus 170 ~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l 249 (1215)
.+.=.+...+++.++.+|.....++-.+.....+-+.. ...+++-+..... +..+-.++..+-.+ .+....+-+
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~--tssiMkD~~~g~~-~~~kp~AiRsL~~V---id~~tv~~~ 138 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG--TSSIMKDLNGGVP-DDVKPMAIRSLFSV---IDGETVYDF 138 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH--HHHHHHhhccCCc-cccccHHHHHHHHh---cCcchhhhH
Confidence 33344556778888889998888888887765554321 1223333332221 13343444444333 332222222
Q ss_pred hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchh
Q 000941 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED 329 (1215)
Q Consensus 250 ~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~ 329 (1215)
..++. +..- +....+|.+++-.---+........+.++++...+++. ++.-||+...+.-.-.. .. - .+
T Consensus 139 er~l~---~a~V---s~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~-l~q~p~~~~n~gy~Pn~-~~--i-sq 207 (898)
T COG5240 139 ERYLN---QAFV---STSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD-LKQFPNQHGNEGYEPNG-NP--I-SQ 207 (898)
T ss_pred HHHhh---hhcc---ccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh-HhhCcCccCCcccCCCC-Ch--H-HH
Confidence 22211 1111 23445666655332222222223566778888777776 44567654322100000 00 0 00
Q ss_pred hhcCCCCCCCCccHHHHH----HHHHHHHHHHhhC-------c--------hhh---HHHHHHHHHHHHhhhcccchhHH
Q 000941 330 ESANEYTDDEDASWKVRR----AAAKCLAALIVSR-------P--------EML---SKLYEEACPKLIDRFKEREENVK 387 (1215)
Q Consensus 330 ~~~~~~~dd~d~swkvR~----~Aa~~L~~li~~~-------~--------~~l---~~~~~~i~p~Li~~~~d~e~~Vr 387 (1215)
|. --.--++.|| +-.+++..+.... . +.+ .+++..+-|.|-.-+++.-+.|.
T Consensus 208 -----YH-alGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~ 281 (898)
T COG5240 208 -----YH-ALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVF 281 (898)
T ss_pred -----HH-HHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhh
Confidence 00 0000123444 2222222222111 0 111 12344455555444577778999
Q ss_pred HHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhh
Q 000941 388 MDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467 (1215)
Q Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~ 467 (1215)
.++.++...+...-. + .+.+.+.+.++...|+......|-+|+.+|.+++...|....-+-
T Consensus 282 lE~Ar~v~~~~~~nv------------~-----~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN-- 342 (898)
T COG5240 282 LEAARAVCALSEENV------------G-----SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN-- 342 (898)
T ss_pred HHHHHHHHHHHHhcc------------C-----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC--
Confidence 998887777643210 1 345677788888888888778999999999999988765432211
Q ss_pred hhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCc
Q 000941 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE 547 (1215)
Q Consensus 468 lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 547 (1215)
+.+...++|.+ |.=+.-++..++++...+.+.. +-..+|..+.-+.|.+-.++..|++.+...+
T Consensus 343 --~evEsLIsd~N-----r~IstyAITtLLKTGt~e~idr-Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~F-------- 406 (898)
T COG5240 343 --KEVESLISDEN-----RTISTYAITTLLKTGTEETIDR-LVNLIPSFVHDMSDGFKIIAIDALRSLSLLF-------- 406 (898)
T ss_pred --hhHHHHhhccc-----ccchHHHHHHHHHcCchhhHHH-HHHHHHHHHHhhccCceEEeHHHHHHHHhhC--------
Confidence 22223334433 1112334566676643333322 2333455555566666667767766655443
Q ss_pred CCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHH
Q 000941 548 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVI 627 (1215)
Q Consensus 548 ~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i 627 (1215)
+..... .+.++.+.|.+ ....+-|..++.++..+++..++ .-..++..|++.+.+-.-..-+++.|+.+
T Consensus 407 --p~k~~s----~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~~p~----skEraLe~LC~fIEDcey~~I~vrIL~iL 475 (898)
T COG5240 407 --PSKKLS----YLDFLGSSLLQ-EGGLEFKKYMVDAISDAMENDPD----SKERALEVLCTFIEDCEYHQITVRILGIL 475 (898)
T ss_pred --cHHHHH----HHHHHHHHHHh-cccchHHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 112233 33444444443 44577888888888888776532 34567777777776655556778888877
Q ss_pred Hc-CCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHH
Q 000941 628 AA-SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALE 706 (1215)
Q Consensus 628 ~~-s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~ 706 (1215)
.. .|-...-..|+..+...+ --.|..+|.+|+.||...+.+....+.+ +.+...+...+++.|..+|.-|-.
T Consensus 476 G~EgP~a~~P~~yvrhIyNR~----iLEN~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 476 GREGPRAKTPGKYVRHIYNRL----ILENNIVRSAAVQALSKFALNISDVVSP---QSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred cccCCCCCCcchHHHHHHHHH----HHhhhHHHHHHHHHHHHhccCccccccH---HHHHHHHHHHhhcccHHHHHHHHH
Confidence 62 221122256777666554 3367789999999999998776654443 445566677888999999887766
Q ss_pred HHHHH
Q 000941 707 LCCTL 711 (1215)
Q Consensus 707 ~l~~l 711 (1215)
.+..+
T Consensus 549 ~l~~~ 553 (898)
T COG5240 549 LLRNM 553 (898)
T ss_pred HHHhh
Confidence 65544
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=9e-05 Score=86.17 Aligned_cols=360 Identities=14% Similarity=0.169 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHH
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE 423 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 423 (1215)
-+|..|.++|..+=- +.+-..++-++-+...|..+-||..+..++..+-+. + .++
T Consensus 123 LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL--------------d-----~e~ 177 (968)
T KOG1060|consen 123 LIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL--------------D-----PEQ 177 (968)
T ss_pred HHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--------------C-----hhh
Confidence 578787777665411 111112222223345788888998888887776532 1 233
Q ss_pred HHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC---
Q 000941 424 VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH--- 500 (1215)
Q Consensus 424 ~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~--- 500 (1215)
-++++..|.+.|.|.++.+.-+|..+|.+.+...-.-+.+|+..+...+... .. .. ++-.+..|...+++.
T Consensus 178 k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dv----de-Wg-QvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 178 KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV----DE-WG-QVVLINMLTRYARHQLPD 251 (968)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch----hh-hh-HHHHHHHHHHHHHhcCCC
Confidence 4577788888888888888777777777766433333445555554433321 10 00 111112222111111
Q ss_pred -------------------------CCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChh
Q 000941 501 -------------------------SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP 555 (1215)
Q Consensus 501 -------------------------~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 555 (1215)
.|-...|-+.-++..+-..+...++.|...+ .++...+.|. .
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~----aql~y~lAP~-----~---- 318 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAV----AQLFYHLAPK-----N---- 318 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHH----HhHHHhhCCH-----H----
Confidence 0101112233444444444555555444332 2333444442 1
Q ss_pred cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc-hhHHHHHHHHHHHHcCCCCC
Q 000941 556 YVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE-ITRLTAVKAFAVIAASPLHI 634 (1215)
Q Consensus 556 ~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e-~~r~~a~~al~~i~~s~~~~ 634 (1215)
.+..+...++..|.. .+++|.-.+.++..+...-...|.||+...+-. -++. .++.-=+..|..++..
T Consensus 319 ~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~----ssDp~~vk~lKleiLs~La~e---- 387 (968)
T KOG1060|consen 319 QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEPHLKSFFVR----SSDPTQVKILKLEILSNLANE---- 387 (968)
T ss_pred HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhhhhhceEee----cCCHHHHHHHHHHHHHHHhhh----
Confidence 234445555555542 356777777778777766555555554433211 1121 1233335667777632
Q ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 635 DLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 635 ~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.-+..++.++..++.+.++.+-.+++.+|+..+.+.++ +-+..++.|..+++..|..+...+...+..+++.
T Consensus 388 ---sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 388 ---SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred ---ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 23668899999999999998999999999998887764 3466788888899888998888888899999984
Q ss_pred ccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCChHHHHHHHhc
Q 000941 715 KRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLS 774 (1215)
Q Consensus 715 ~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~ 774 (1215)
+|. -...++-.+.+++.+-. -..+-.++..+++..+...+.-.++++..+..
T Consensus 460 ---~p~----~h~~ii~~La~lldti~-vp~ARA~IiWLige~~e~vpri~PDVLR~lak 511 (968)
T KOG1060|consen 460 ---DPA----EHLEILFQLARLLDTIL-VPAARAGIIWLIGEYCEIVPRIAPDVLRKLAK 511 (968)
T ss_pred ---ChH----HHHHHHHHHHHHhhhhh-hhhhhceeeeeehhhhhhcchhchHHHHHHHH
Confidence 443 22345666666663332 22222445556666655543334455555443
No 54
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.0019 Score=76.11 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=128.6
Q ss_pred hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCc--CCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 000941 508 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE--GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 585 (1215)
Q Consensus 508 ~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~l 585 (1215)
++-.++|.+...++...+-+-..|..++..+...-.+... -..+++.||+..++..+++.+...+. .--+=...|+
T Consensus 495 ~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~--~EneylmKaI 572 (960)
T KOG1992|consen 495 HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK--AENEYLMKAI 572 (960)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc--cccHHHHHHH
Confidence 6677778888888766555666666666666533222000 01456788888888888876643221 1122233444
Q ss_pred HHHHHhccCcccchhhhhHHHHHHhh----ccch---hHHHHHHHHHHHHcC---CCCCchhHHHHHHHHHHHHHHHHhh
Q 000941 586 GLVISTFGDNLGAELPACLPVLVDRM----GNEI---TRLTAVKAFAVIAAS---PLHIDLTCVLEHVIAELTAFLRKAN 655 (1215)
Q Consensus 586 g~l~~~~~~~l~~~~~~~l~~L~~~L----~~e~---~r~~a~~al~~i~~s---~~~~~~~~~l~~~l~~L~~~L~~~~ 655 (1215)
-.++....+..-|+.+.+++.|.+.+ +|+. -...-..+++.+... .....++.|...++|.+...++..=
T Consensus 573 mRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI 652 (960)
T KOG1992|consen 573 MRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI 652 (960)
T ss_pred HHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444456666666665443 4443 112234455544421 1112256788889998888888777
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHh-hhhcCCCChhhHHHHHHHHHHHhhcccCCCchhh--hhhhhhHHH
Q 000941 656 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVEL-STLISDSDLHMTALALELCCTLMADKRSSPNVGL--AVRNKVLPQ 732 (1215)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l-~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~--~~~~~~l~~ 732 (1215)
-..-.-++..++.+++...+.+++. +.++++-+ .+.+=+ -.....+....+..+.+. .|+... .....++..
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip~~-~~~l~~~lLsp~lW~-r~gNipalvrLl~aflk~---g~~~~~~~~~l~~iLGi 727 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIPDS-YSPLFPPLLSPNLWK-RSGNIPALVRLLQAFLKT---GSQIVEAADKLSGILGI 727 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHhcCHHHHh-hcCCcHHHHHHHHHHHhc---CchhhcccccchhHHHH
Confidence 7788889999999999887755543 23333322 222200 011223455566666653 233222 234556666
Q ss_pred HHHHhhhcccchhhhH
Q 000941 733 ALALIKSSLLQGQALV 748 (1215)
Q Consensus 733 l~~ll~s~~l~~~~l~ 748 (1215)
+-+++.|+......++
T Consensus 728 fqkLiaSka~Dh~GF~ 743 (960)
T KOG1992|consen 728 FQKLIASKANDHHGFY 743 (960)
T ss_pred HHHHhcCcccchhHHH
Confidence 6666666654444433
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.0002 Score=83.88 Aligned_cols=426 Identities=16% Similarity=0.192 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
+..--+...+-+-|+.+|.-|...|...+|.+.. ++-...+.+..-..+...++-+|.-|.+|+-.++-..|.
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s---~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~---- 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD---- 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch----
Confidence 3445577888888999999999999999998874 444445555555555567788899999999988876664
Q ss_pred HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcC---------------ChHHH
Q 000941 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA---------------NQASV 186 (1215)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~---------------~~~~v 186 (1215)
....++|.....|.+. +..|-...+.++.++++.-.+.+. ++..+.+-+...|.+ ++|-+
T Consensus 176 --l~e~f~~~~~~lL~ek--~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 176 --LVEHFVIAFRKLLCEK--HHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred --HHHHhhHHHHHHHhhc--CCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 3455666666666665 578888999999999988666553 333344444333321 24457
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCC
Q 000941 187 RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN 266 (1215)
Q Consensus 187 rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~ 266 (1215)
+-+.+..|..++..-.+ ..++|..++..+-...+.+..... +| |-+.|..++. + ..
T Consensus 251 Qi~iLrlLriLGq~d~d--aSd~M~DiLaqvatntdsskN~Gn------AI-----------LYE~V~TI~~-I----~~ 306 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDAD--ASDLMNDILAQVATNTDSSKNAGN------AI-----------LYECVRTIMD-I----RS 306 (866)
T ss_pred HHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHhcccccccchh------HH-----------HHHHHHHHHh-c----cC
Confidence 77777777777765333 234444444433221111111000 01 1111112221 1 25
Q ss_pred cHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHH
Q 000941 267 DEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1215)
Q Consensus 267 d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR 346 (1215)
+..+|..|...++.|+..... .+|
T Consensus 307 ~~~LrvlainiLgkFL~n~d~--------------------------------------------------------Nir 330 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDN--------------------------------------------------------NIR 330 (866)
T ss_pred CchHHHHHHHHHHHHhcCCcc--------------------------------------------------------cee
Confidence 678898888887776544221 233
Q ss_pred HHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHH
Q 000941 347 RAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSK 426 (1215)
Q Consensus 347 ~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~ 426 (1215)
=.|...|..++...|.....+-.++ +++++|++..+|..+++....+++. +.+..
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~---------------------~Nv~~ 385 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE---------------------SNVRV 385 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc---------------------ccHHH
Confidence 4455555555555555555444444 4556999999999999888888753 33556
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcch
Q 000941 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 506 (1215)
Q Consensus 427 i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 506 (1215)
+++-+...|...++..|..+.+-+..+++.+.+.=.-|++.++..+..+ ..-++.++..-+-.++.+.. ...+
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a------G~~V~~dv~~nll~LIa~~~-~e~~ 458 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA------GDFVNDDVVNNLLRLIANAF-QELH 458 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc------ccccchhhHHHHHHHHhcCC-cchh
Confidence 6777777777667778888888888888886554344777666555432 24566777766666665432 2333
Q ss_pred hh-hhhhHHHHHHH----hcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHH
Q 000941 507 PY-IKALSSPVLAA----VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1215)
Q Consensus 507 ~~-l~~l~p~l~~~----l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~A 581 (1215)
.| +..++-.+... ++.. ....-|.+|+|+.-..+-... +.......--..+...+.+.+.....+..+|.-|
T Consensus 459 ~y~~~rLy~a~~~~~~~~is~e--~l~qVa~W~IGEYGdlll~~~-~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ya 535 (866)
T KOG1062|consen 459 EYAVLRLYLALSEDTLLDISQE--PLLQVASWCIGEYGDLLLDGA-NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYA 535 (866)
T ss_pred hHHHHHHHHHHhhhhhhhhhhh--hHHHHHHHHhhhhhHHhhcCc-cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHH
Confidence 33 45555554442 2222 223334444444332111100 0011122223345555555556556678899999
Q ss_pred HHHHHHHHHhccC
Q 000941 582 ISCMGLVISTFGD 594 (1215)
Q Consensus 582 i~~lg~l~~~~~~ 594 (1215)
+.++--+-..++.
T Consensus 536 l~Al~KLSsr~~s 548 (866)
T KOG1062|consen 536 LTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHhhccc
Confidence 9998877666543
No 56
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=0.0023 Score=74.47 Aligned_cols=621 Identities=14% Similarity=0.148 Sum_probs=292.3
Q ss_pred CCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHH-----HhccCc----ccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 16 KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVV-----QQLDDV----AGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll-----~~L~D~----~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
.++-+||--+..|...+...+-......+.-|-..+. ..+.+. -+-++|.+.+.++.|.-..-+..|+...
T Consensus 51 s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF 130 (980)
T KOG2021|consen 51 SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFF 130 (980)
T ss_pred ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4445666666555444433222122222222333333 233344 2458999999999988766677899988
Q ss_pred HHHHHHhcCCC-cchhhHHHHHHHHHHhccCc------h------hhH-HHHHHhHhHHHHh----hhhc-cCC-ChhHH
Q 000941 87 DKLCIKLLNGK-DQHRDIASIALKTIIAEVTT------S------SLA-QSIHTSLTPQLTK----GITL-KDM-NTEIR 146 (1215)
Q Consensus 87 ~~L~~~~~~~~-~~~r~~a~~aL~~~i~~~~~------~------~~~-~~~~~~l~p~L~~----~l~~-~~~-~~~v~ 146 (1215)
..+...+.-+. ..--+.....|-.+=.++.. + ... ..+-+.-+|.+.+ .++. ++. ++++.
T Consensus 131 ~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~ 210 (980)
T KOG2021|consen 131 DDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLI 210 (980)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHH
Confidence 88887664322 11112222212111112111 0 011 1122334555542 2221 111 57788
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHh-----hcC
Q 000941 147 CECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-LAKATIEVVRNL-----RSK 220 (1215)
Q Consensus 147 ~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~~~l~~~ll~~l-----~~~ 220 (1215)
..++++++..++=..-.+-. -+..++.+...+. ...+|..|+.|+-.++.---+.. --.+++.+.+.+ .+.
T Consensus 211 ~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~ 287 (980)
T KOG2021|consen 211 NSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSA 287 (980)
T ss_pred HHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhcc
Confidence 88888887776654333211 2334445555554 44799999999988776543321 011222221111 111
Q ss_pred C--CChHHHH---HHHHHHH-----HHHhh---h----hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 221 G--AKPEMIR---TNIQMVG-----ALSRA---V----GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 221 ~--~~~~~~~---~~i~~l~-----~l~~~---~----~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
. .+.+.-+ ..+..+| ...+- . ......-+-.++|++++.+. ++++++....+..+...+.
T Consensus 288 dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~---~e~ddit~~ifpFlsdyl~ 364 (980)
T KOG2021|consen 288 DQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLN---NEFDDITAKIFPFLSDYLA 364 (980)
T ss_pred ccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHH
Confidence 1 1111111 1122222 11110 0 01222234457999999988 4666766666666655444
Q ss_pred hC---h---hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHH
Q 000941 284 RC---P---RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1215)
Q Consensus 284 ~~---~---~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li 357 (1215)
.. + ..-..++.+++..+.+-++|||.|..+++.. ++|+++ .--.+|+.--..++++.
T Consensus 365 ~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~t----------g~EeEa-------~f~e~RkkLk~fqdti~ 427 (980)
T KOG2021|consen 365 FLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVT----------GDEEEA-------FFEEVRKKLKNFQDTIV 427 (980)
T ss_pred HHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCC----------CchHHH-------HHHHHHHHHHHHHHHHH
Confidence 32 2 1234578899999999999999874322100 000011 11257888777777887
Q ss_pred hhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~ 437 (1215)
.-.|+.+-......+..-+...++..+..-.-++.-+..+-+.+....-.. ...+..+...+....+.++.. ..+..
T Consensus 428 ~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~-nsgd~s~~~vl~~~~~ll~ts--qv~~h 504 (980)
T KOG2021|consen 428 VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGL-NSGDISTSQVLFLNELLLMTS--QVLAH 504 (980)
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccc-cCccccHHHHHHHHHHHHHHc--ccccC
Confidence 778876554443333333333344444333334444444444432210000 001111211233333333221 11111
Q ss_pred cChhhHHHHHHHHHHHHHhCchhh---hhhhhhhhHHHHH--hhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000941 438 KSIKTKVGAFSVLRELVVVLPDCL---ADHIGSLIPGIEK--SLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKAL 512 (1215)
Q Consensus 438 ~~~~~r~~~~~~l~~L~~~~~~~l---~~~~~~lv~~l~~--~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l 512 (1215)
. .+...+-.+..++... .-+ +.|+|.++..... .+.+ .+.++|..|.-++..+++... ..+-||++.+
T Consensus 505 ~---h~lVqLlfmE~ivRY~-kff~~esq~ip~vL~aFld~rglhn--~ne~Vr~RawYLF~RfVKlLk-kqlvpfie~i 577 (980)
T KOG2021|consen 505 D---HELVQLLFMELIVRYN-KFFSTESQKIPLVLNAFLDSRGLHN--KNENVRLRAWYLFTRFVKLLK-KQLVPFIEEI 577 (980)
T ss_pred C---chHHHHHHHHHHHHHH-HHHhcchhhhHHHHHHHccchhccc--cccccchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 2 3333344555555421 111 1245544444432 2233 336788888888888877643 2445677777
Q ss_pred HHHHHHHhcCCch------------HHHHHHHHHHHHHHHhccCC-Cc--C--CCCCChhcHHH-HHHHHHHHhhccCCC
Q 000941 513 SSPVLAAVGERYY------------KVTAEALRVCGELVRVLRPS-VE--G--LGFDFKPYVQP-IYNAIMSRLTNQDQD 574 (1215)
Q Consensus 513 ~p~l~~~l~d~~~------------~v~~~al~~l~~l~~~~~~~-~~--~--~~~~~~~~l~~-l~~~l~~~l~~~d~~ 574 (1215)
+.-+...+..+.+ .-...-++++|-++. .+.. .+ + ...-+.|.+.+ +.......+. +|.+
T Consensus 578 ln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~-l~n~paE~qaay~~~litpl~~~~~igl~~a~la-sde~ 655 (980)
T KOG2021|consen 578 LNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIIT-LNNSPAELQAAYANTLITPLILDQIIGLLFAQLA-SDEA 655 (980)
T ss_pred HHHHHHHHcCcCCCcCccccccccccccceeeecceEEEe-CCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHh-cccc
Confidence 7776666631111 000001111111110 0000 00 0 01112222222 1112222232 3444
Q ss_pred HHHH----HHHHHHHHHHHHhccCcc------------cchhhhhHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhH
Q 000941 575 QEVK----ECAISCMGLVISTFGDNL------------GAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTC 638 (1215)
Q Consensus 575 ~~Vr----~~Ai~~lg~l~~~~~~~l------------~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~ 638 (1215)
.-+. ..++.++|.+++-+...+ ...+..+++.|....++|..|.+.-..+++++.. ++.+.-|
T Consensus 656 ~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~-lg~~vlP 734 (980)
T KOG2021|consen 656 SPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPI-LGNKVLP 734 (980)
T ss_pred ccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh-cchhhhc
Confidence 2222 556777888776653322 2345566666666667888887777778887633 2334567
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC
Q 000941 639 VLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGD 675 (1215)
Q Consensus 639 ~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~ 675 (1215)
+++++++.+ |.+.+..--..-+..|+.+.+.+..
T Consensus 735 fipklie~l---L~s~d~kEmvdfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 735 FIPKLIELL---LSSTDLKEMVDFLGFLSQLIHKFKT 768 (980)
T ss_pred chHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 777776654 3344433344556667777766553
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.60 E-value=1.7e-06 Score=92.95 Aligned_cols=182 Identities=14% Similarity=0.242 Sum_probs=128.7
Q ss_pred CccHHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCC
Q 000941 340 DASWKVRRAAAKCLAALIVSR-----PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1215)
Q Consensus 340 d~swkvR~~Aa~~L~~li~~~-----~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1215)
+.+|+.|..|..-|..++... ++.+...+..+++.+...+.+....|-..++.++..+....+.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----------- 86 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----------- 86 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-----------
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 345999999999999999876 2333334445557777778877777888889999999988762
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhh-hHHHHHhhcCCCCcchhHHHHHHHH
Q 000941 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSL-IPGIEKSLNDKSSTSNLKIEALTFT 493 (1215)
Q Consensus 415 ~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~l-v~~l~~~l~d~~~~~~~~~~al~~l 493 (1215)
.+..+++.+++.+.+.+.+++..++..|..+|..++...+ +.+.+ .+.+...+++++ +.+|..++.++
T Consensus 87 ----~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn--~~vR~~~~~~l 155 (228)
T PF12348_consen 87 ----HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKN--PQVREECAEWL 155 (228)
T ss_dssp ----GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S---HHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 4567788899999999998888899999999999998654 23344 666667777766 78999999999
Q ss_pred HHHhccCC--CCcchh--hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000941 494 RLVLSSHS--PPVFHP--YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR 543 (1215)
Q Consensus 494 ~~l~~~~~--~~~~~~--~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1215)
..++..++ ...+.. .++.+.+.+.+++.|.++.|+..|-.++..+.+..+
T Consensus 156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99998887 344444 468999999999999999999999999988877653
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.59 E-value=2.2e-05 Score=91.99 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=178.0
Q ss_pred CCChHHHHHHHHHHHHhcc----------Ccc--cchhHHHH----HHHHHHhhccChhhHHHHHHHHHHHhcCC-Ccch
Q 000941 38 KADADLEVKLSNIVVQQLD----------DVA--GDVSGLAV----KCLAPLVKKVSEPRVVEMTDKLCIKLLNG-KDQH 100 (1215)
Q Consensus 38 ~~~~~~~~~i~~~ll~~L~----------D~~--~~Vq~~A~----~~l~~l~~~~~~~~~~~lv~~L~~~~~~~-~~~~ 100 (1215)
+++.+...+++..+...+- +.+ .+.+...+ .+++.+-+.+.-+...+++..+.....+. ++..
T Consensus 127 ~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 206 (415)
T PF12460_consen 127 SLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFS 206 (415)
T ss_pred hCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHH
Confidence 3566777777877777665 211 12233332 44444444444346677888888887654 3556
Q ss_pred hhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhc
Q 000941 101 RDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS 180 (1215)
Q Consensus 101 r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~ 180 (1215)
|..++..+..++...+..+....+++ .+...+... .....+..+++++.-+.+..----.+....+.+.++..++
T Consensus 207 ~~~~~~~la~LvNK~~~~~~l~~~l~----~~~~~~~~~-~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~ 281 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPDDDDLDEFLD----SLLQSISSS-EDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLS 281 (415)
T ss_pred HHHHHHHHHHHHcCCCChhhHHHHHH----HHHhhhccc-CCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC
Confidence 77888888888887665333333333 333333111 1456677777777665544322223556677788888887
Q ss_pred CChHHHHHHHHHHHHHHHhhcC----------------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh-
Q 000941 181 ANQASVRKKSVSCIASLASSLS----------------DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY- 243 (1215)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~~~~----------------~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~- 243 (1215)
+ +.++..+..+++.+..-.+ +.+|..++|.+++..+..+. +.+..++.+++.+.+..|.
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~ALs~ll~~vP~~ 357 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTALSHLLKNVPKS 357 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhCCHH
Confidence 7 6678888888887775421 12378899999999887654 4778899999999999995
Q ss_pred hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHH
Q 000941 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1215)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1215)
-+.++++.++|.+++.+. -+|.+++.++++++..++...|+.+.+|+..+++.+++.
T Consensus 358 vl~~~l~~LlPLLlqsL~---~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 358 VLLPELPTLLPLLLQSLS---LPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999997 467789999999999999999999999999999998763
No 59
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.57 E-value=2.2e-06 Score=92.17 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=125.2
Q ss_pred CCCcchhhHHHHHHHHHHhcc-Cc--hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000941 95 NGKDQHRDIASIALKTIIAEV-TT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERL 171 (1215)
Q Consensus 95 ~~~~~~r~~a~~aL~~~i~~~-~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~l 171 (1215)
+.+.+.|.-+..-|+.++.+- +. .......++.+++.+...+.+. ...+...|+.++..+....|..+.++.+.+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344455556666666666543 11 1222233455556666666654 356889999999999999999999999999
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh---hhhcc
Q 000941 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFGP 247 (1215)
Q Consensus 172 l~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~---~~~~~ 247 (1215)
++.++..+.++...+|..|..||..+..+++ ....+ .+.+.....+.+ ..+|..+++++..+....| ..+..
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn--~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN--PQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 9999999999988999999999999999988 11233 444555555544 4788999999999999887 45544
Q ss_pred c--hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH
Q 000941 248 H--LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC 293 (1215)
Q Consensus 248 ~--l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l 293 (1215)
. ++.+++.+...+. |.+.++|++|..+|..+...+|+.-...+
T Consensus 172 ~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred cchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 3 5889999999888 78999999999999999888886443333
No 60
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.54 E-value=0.0063 Score=72.89 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=133.8
Q ss_pred hHHHHHHHhhhhccCCCCC---ccchHHHHHHhcCCCchhHhhHHHHHHHhhhhc---------Cc-----------ccc
Q 000941 828 SHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEEIKSAASYALGNIAVG---------NL-----------SKF 884 (1215)
Q Consensus 828 ~~lal~~lgei~~~~~~~~---~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~---------~~-----------~~~ 884 (1215)
+..|+..+.++++..=+.. ...+...+++++.+ +++-..|+.++.-+... +. ...
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~i 868 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDI 868 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhh
Confidence 5677777777765432211 13566677777765 56667788888766632 11 134
Q ss_pred hHHHHHHhhccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCC----
Q 000941 885 LPFILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEP---- 959 (1215)
Q Consensus 885 lp~il~~l~~~~-~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~---- 959 (1215)
.|.+++.+.+.+ ..+..++.+|.-++.+.+ .+.+.|.++.+++.|++....+|-.+|-.+..|+.-+..-.+
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP---~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVP---KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCC---HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 788888888654 446778889999998763 356778899999999999988888888888888776665432
Q ss_pred ---CcchHHHHHhhcCCC---cchhHHHhhhhHhhhcCCCch-hhhhhhHhHHHHHHhccCCChHHHHHHHHH
Q 000941 960 ---AKLVPALKVRTTSSA---AFTRATVVIAIKYSIVERPEK-IDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1025 (1215)
Q Consensus 960 ---~~~lp~l~~~l~~~~---~~~R~~~i~~lk~~i~~~~~~-~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~ 1025 (1215)
.+++|.+...-++.+ -.+|-.++..+.-+-...+.. .-++-+..+..+.+.|+|+-.-||.-|..+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 478888888765544 457888888887555445432 233444556677778889988899877654
No 61
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00025 Score=77.93 Aligned_cols=498 Identities=14% Similarity=0.151 Sum_probs=244.3
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhhhh-----------hhhh-------HHHHHHHHhhhhcCC-hHHHHHHHHHHHH
Q 000941 135 GITLKDMNTEIRCECLDILCDVLHKFGNL-----------MSND-------HERLLSALLPQLSAN-QASVRKKSVSCIA 195 (1215)
Q Consensus 135 ~l~~~~~~~~v~~~al~~L~~l~~~~g~~-----------l~~~-------~~~ll~~ll~~l~~~-~~~vrk~a~~~l~ 195 (1215)
++++. ++..|.-|+.+++.+++.-... ++|+ .-++..+++-.|..+ .+.+-...++|++
T Consensus 55 ~lkd~--~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla 132 (728)
T KOG4535|consen 55 TLKDP--SPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLA 132 (728)
T ss_pred ecCCC--ChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 44443 4677777888888777653222 2222 234455555555443 3456677899999
Q ss_pred HHHhhcCHHH-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCC-----
Q 000941 196 SLASSLSDDL-----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASE----- 265 (1215)
Q Consensus 196 ~l~~~~~~~~-----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~----- 265 (1215)
.++...+-+. +.+++.++-..+++.+. .++-.++..+|.+..+.. .+|+|--.+-..+...+-
T Consensus 133 ~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~--~v~vs~l~~~~~~v~t~~-----~~pei~~~~~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 133 NLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDV--NVRVSSLTLLGAIVSTHA-----PLPEVQLLLQQPCSSSNSATPHL 205 (728)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHhcCC-----CCHHHHHHhcCCCccccccCCCC
Confidence 9998887763 34566666666666553 577788888888876532 123333222222221100
Q ss_pred CcHH-HHHHHH-HHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH
Q 000941 266 NDEE-LREYSL-QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1215)
Q Consensus 266 ~d~e-lre~al-~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw 343 (1215)
..+| -++.+- -+++..-...|+.- |--.-++..+... .|--..+.-..-+. ...-+.-|. . -
T Consensus 206 s~~~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~i~~~~~i---~~~~~~~s~~~~~~-------~~~~~~~~~----p-s 269 (728)
T KOG4535|consen 206 SPPDWWKKLPAGPSLEETSVSSPKGS-SEPCWLIRLCISI---VVLPKEDSCSGSDA-------GSAAGSTYE----P-S 269 (728)
T ss_pred CChHHHHhcCCCchhhhhccCCccCC-CCCcceeeeeeee---eecCCccccchhhH-------HhhhcCccC----C-c
Confidence 0000 011000 01111111111100 0000011111000 00000000000000 000000010 0 1
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcc-c--CCCcCCCCCCChhhHH
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGN-V--TKGQIDNNELNPRWLL 420 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~-~--~~~~~~~~~~~~~~~L 420 (1215)
.+|-.+.++|..+...+ .++.-++-.+.-.+-..+.+..+.+..-+..++..+..+.+. . ..|++. ..
T Consensus 270 ~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~--------~q 340 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP--------DQ 340 (728)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch--------hh
Confidence 46666666665544322 333445555555555667888888888888888888776551 1 122220 00
Q ss_pred H-HHHHHHH-HHHHHHhcc-cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000941 421 K-QEVSKIV-KSINRQLRE-KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1215)
Q Consensus 421 ~-~~~p~i~-~~l~~~L~~-~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1215)
. ..+..+. +......=| ..+.-+.+.+..+..+....-..|.+.-....+.+...-.|.. +.-++.+|+..++.++
T Consensus 341 ~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyV 419 (728)
T KOG4535|consen 341 RAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYV 419 (728)
T ss_pred hccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEE
Confidence 0 0111111 011111111 1122344445555554332212222222233333333333332 2346778887777766
Q ss_pred ccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCCh-hcHHHHHHHHHHHhhccCC-CH
Q 000941 498 SSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFK-PYVQPIYNAIMSRLTNQDQ-DQ 575 (1215)
Q Consensus 498 ~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~l~~~d~-~~ 575 (1215)
-+++...-.-+.......+...+.|+....+..+...++.+...+...-.+ ...+. .+...++...+......+. ..
T Consensus 420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps-~~s~~eR~sg~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPT-PDSFQERFSGLLLLKMLRSAIEASADKD 498 (728)
T ss_pred eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 655543334467777777888888888888888888888877665432110 00111 1222333333332222222 37
Q ss_pred HHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhc-------cchhHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHH
Q 000941 576 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG-------NEITRLTAVKAFAVIAASP-LHIDLTCVLEHVIAEL 647 (1215)
Q Consensus 576 ~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~-------~e~~r~~a~~al~~i~~s~-~~~~~~~~l~~~l~~L 647 (1215)
.||.+|+.++|.+.........+-+..++..-+..+- +-.+|++++.++|++...+ .+.+-.+|.+.+.+.|
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L 578 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL 578 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence 8999999999998776543222333333332222221 1237899999999998432 2233368999999999
Q ss_pred HHHHHH-hhhHHHHHHHHHHHH
Q 000941 648 TAFLRK-ANRALRQATLGTMNS 668 (1215)
Q Consensus 648 ~~~L~~-~~~~lr~~al~~L~~ 668 (1215)
..++++ .|-.+|..+..+|..
T Consensus 579 ~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 579 TSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHHHHhccceEeehhhhhhcC
Confidence 998875 355677766666554
No 62
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=9.5e-05 Score=86.64 Aligned_cols=425 Identities=17% Similarity=0.185 Sum_probs=229.3
Q ss_pred HHHHHHHHHhcCC-CcchhhhhHHHHHHHhcccc-CCCChHHHHHHHHHHHHhccCc-ccchhHHHHHHHHHHhhccChh
Q 000941 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEP 80 (1215)
Q Consensus 4 ~~l~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~-~~~Vq~~A~~~l~~l~~~~~~~ 80 (1215)
--+.+||+.++.. |+-...-|+..|+..|.-.+ -.++-=..+.+++.|..+|++. |.+++++|++||..|...+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3577899999776 88777779999999886421 1122234578999999999987 5799999999999999887763
Q ss_pred h--HH--HHHHHHHHHhcCCCcchhhHHHHH---HHHHHhccCchhhHHHHHH--hHhH--HHHhhhhccCCChhHHHHH
Q 000941 81 R--VV--EMTDKLCIKLLNGKDQHRDIASIA---LKTIIAEVTTSSLAQSIHT--SLTP--QLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 81 ~--~~--~lv~~L~~~~~~~~~~~r~~a~~a---L~~~i~~~~~~~~~~~~~~--~l~p--~L~~~l~~~~~~~~v~~~a 149 (1215)
. +. ..|+.|+..+.. -+.-|+|-.+ |+.+-..-|. .+++ .|.- ..++.+ .-.++..|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~--IeyiDvAEQ~LqALE~iSR~H~~-----AiL~AG~l~a~LsylDFF-----Si~aQR~A 314 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLT--IEYIDVAEQSLQALEKISRRHPK-----AILQAGALSAVLSYLDFF-----SIHAQRVA 314 (1051)
T ss_pred hheeecccchHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhccH-----HHHhcccHHHHHHHHHHH-----HHHHHHHH
Confidence 2 11 234455544421 1223444444 4433222111 0111 0000 111222 24567777
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH--HHHH-----HHHHHHHHHhhc--C
Q 000941 150 LDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD--DLLA-----KATIEVVRNLRS--K 220 (1215)
Q Consensus 150 l~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~--~~~~-----~l~~~ll~~l~~--~ 220 (1215)
+-+....+......=-.+.-+.++.+-+.|+..+...-+.++.|+..++..+.. +.|+ .+++.+.+.+.- +
T Consensus 315 laiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t 394 (1051)
T KOG0168|consen 315 LAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPT 394 (1051)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcc
Confidence 777777777665543345667788888888888877888888899888865532 2333 345555444432 2
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhhccc-hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh-----------
Q 000941 221 GAKPEMIRTNIQMVGALSRAVGYRFGPH-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD----------- 288 (1215)
Q Consensus 221 ~~~~~~~~~~i~~l~~l~~~~~~~~~~~-l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~----------- 288 (1215)
.....+.-..|.++..++..+|.-|... ...|...+...+.... . .+-......+.++|.+
T Consensus 395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s-~------s~nas~~~~l~r~Pnel~e~~sl~~eL 467 (1051)
T KOG0168|consen 395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS-K------SANASLHELLSRSPNELYELTSLIIEL 467 (1051)
T ss_pred cccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC-c------CcccccccccccCcHHHHHHHHHHhee
Confidence 2222345566778888888777655553 3444444444333110 0 0000111112222321
Q ss_pred -hcccHHHHHHHHHHHhccCCCCCCCCCC-----Cccc----ccccccchhhhcCCCCCCCCccHHH-HHHHHHHHHHHH
Q 000941 289 -ISSYCDEILHLTLEYLSYDPNFTDNMEE-----DSDD----EAYEEEEEDESANEYTDDEDASWKV-RRAAAKCLAALI 357 (1215)
Q Consensus 289 -~~~~l~~ii~~~l~~l~~dpn~~~~~d~-----d~~~----~~~~~~~d~~~~~~~~dd~d~swkv-R~~Aa~~L~~li 357 (1215)
+.++++-|+.+-..++. ++.+..++. |+-. ....+--- .+ .-.+|-..+-++ |+-....=..++
T Consensus 468 lp~~p~e~i~~~~~~~~~--~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri--~~-q~~~~~~t~~~~~dkl~~~~r~~~l 542 (1051)
T KOG0168|consen 468 LPCLPVEGIFAVDCSLIY--EIVNLADELLWQWRDDRGSWHTYTNIDSRI--IE-QINEDTGTSRKQQDKLNGSAREGLL 542 (1051)
T ss_pred ecCCcccceeehhhhhhc--ccccccccccccCccccccccccchhhhhh--hh-hhccCcccchhhhhhcCCchhhhhh
Confidence 12223323222222211 111100000 0000 00000000 00 000011111111 111112223567
Q ss_pred hhCchhhHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHHHHH
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFK-EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQ 434 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~-d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l~~~ 434 (1215)
...|+.+..+...++|+|++-.. -.+..||..++.++..++-... .+.+.+.+ ..+-..+...
T Consensus 543 ~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~--------------seli~slLk~~~vSS~lAG~ 608 (1051)
T KOG0168|consen 543 KNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSN--------------SELIGSLLKNTNVSSHLAGM 608 (1051)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCC--------------HHHHHHHHhcchHHHHHHhh
Confidence 77899999999999999998874 4579999988887777765431 11233322 2233445556
Q ss_pred hcccChhhHHHHHHHHHHHHHhCchhhhhhhh
Q 000941 435 LREKSIKTKVGAFSVLRELVVVLPDCLADHIG 466 (1215)
Q Consensus 435 L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~ 466 (1215)
|..+...+-..|+++..-|++.+|..|.+++.
T Consensus 609 lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~ 640 (1051)
T KOG0168|consen 609 LSSKDLTVLVGALQVAEILMEKLPDTFSPSFR 640 (1051)
T ss_pred hhcCCCeeEeehHHHHHHHHHHhHHHhhhhHh
Confidence 66777778888999999999988888777553
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.6e-05 Score=82.46 Aligned_cols=387 Identities=16% Similarity=0.149 Sum_probs=214.1
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhcc-cc----CCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChh
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNK-ES----FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP 80 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~-~~----~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~ 80 (1215)
+..++--+++.||.+.-.|...+-+.-.. +. .++ .=++.|+..+..++.+||..|++||..|+..-..+
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l------~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSL------LGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEec------cChHHHHHHhcCCCcEEEeeehhhhhhhhccccch
Confidence 44555557788888877777776543221 10 011 11344667778899999999999999999652211
Q ss_pred h-HHH--HHHHHHHHhcCCCcchhhHHHHHHHHHHhccCch-hh-HHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHH
Q 000941 81 R-VVE--MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SL-AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1215)
Q Consensus 81 ~-~~~--lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~-~~-~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1215)
. +.. -+.-|.....+.+..+|.-+.-+|-. +... +. ..-+..--+|.|+..+... +.+++..++..++.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLln----mThs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisn 234 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLN----MTHSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISN 234 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHH----hhhhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhh
Confidence 1 000 01111111111122222222222221 1110 00 0111122357788877765 68999999999887
Q ss_pred HHH--HhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--H-HHHHHHHHHHHhhcCCCChHHHHHH
Q 000941 156 VLH--KFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--L-LAKATIEVVRNLRSKGAKPEMIRTN 230 (1215)
Q Consensus 156 l~~--~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~-~~~l~~~ll~~l~~~~~~~~~~~~~ 230 (1215)
+.- +..+.+.+..|.+++.+.....++++.++-.|..+|+.++.--.-. + -..-+|.+++.++++-. ......
T Consensus 235 IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~--plilas 312 (550)
T KOG4224|consen 235 IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG--PLILAS 312 (550)
T ss_pred hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch--hHHHHH
Confidence 754 3445566677889999999999999999999999999988532211 1 12346778888877654 344456
Q ss_pred HHHHHHHHhhhhhh----hccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhc
Q 000941 231 IQMVGALSRAVGYR----FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLS 305 (1215)
Q Consensus 231 i~~l~~l~~~~~~~----~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~ 305 (1215)
+-|+-.|+-+-+.. =.-|+..++.. +.. -+.+|++=+|..++-.++.......+.+.+ ..++.+..++.
T Consensus 313 VaCIrnisihplNe~lI~dagfl~pLVrl----L~~--~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 313 VACIRNISIHPLNEVLIADAGFLRPLVRL----LRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred HHHHhhcccccCcccceecccchhHHHHH----Hhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 67776665543211 01134444443 332 256778888888888887755443333322 33444544443
Q ss_pred cCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchh
Q 000941 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREEN 385 (1215)
Q Consensus 306 ~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~ 385 (1215)
. .+-.||.--..|+..+.-..-+...-.=..++|.||....+..++
T Consensus 387 D----------------------------------~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~E 432 (550)
T KOG4224|consen 387 D----------------------------------GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEE 432 (550)
T ss_pred c----------------------------------CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchh
Confidence 1 112344433344444432221111112234667777776777789
Q ss_pred HHHHHHHHHHHHHHHhcccC----CCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch
Q 000941 386 VKMDVFNTFIELVRQTGNVT----KGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1215)
Q Consensus 386 Vr~~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~ 459 (1215)
||-.+..+++.+......|. .|.+ |. ..|-..+.+.+.+.....|..+..++.+|.+.+..
T Consensus 433 v~gNaAaAL~Nlss~v~~YarviEawd~------P~-------~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 433 VRGNAAAALINLSSDVEHYARVIEAWDH------PV-------QGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred hcccHHHHHHhhhhhhHHHHHHHHHhcC------cc-------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 99988888887765433221 1221 11 12222334444444455677777777777766533
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00089 Score=77.53 Aligned_cols=289 Identities=18% Similarity=0.204 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHH
Q 000941 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS 123 (1215)
Q Consensus 44 ~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~ 123 (1215)
..-+...+-+-++++|.-=-..|..+|..++ .++-...+.+.+++.+.++.+-+|.-|-..|-.++..-|.
T Consensus 107 lmL~tn~~rkdl~S~n~ye~giAL~GLS~fv---TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe------ 177 (877)
T KOG1059|consen 107 LMLTTNLLRKDLNSSNVYEVGLALSGLSCIV---TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE------ 177 (877)
T ss_pred HHHHHHHHHHHhccCccchhhheeccccccc---CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH------
Confidence 3333344444455444333455655555544 5666678899999999988898999888888888876553
Q ss_pred HHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhc
Q 000941 124 IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSL 201 (1215)
Q Consensus 124 ~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~ 201 (1215)
.++...|+|.+.|.+. ++.|+..|+.++.+++++.+....+. -+.++..+.++ +|.+- +-+..++.|..+=
T Consensus 178 Alr~~FprL~EkLeDp--Dp~V~SAAV~VICELArKnPknyL~L----AP~ffkllttSsNNWmLI-KiiKLF~aLtplE 250 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDP--DPSVVSAAVSVICELARKNPQNYLQL----APLFYKLLVTSSNNWVLI-KLLKLFAALTPLE 250 (877)
T ss_pred hHhhhHHHHHHhccCC--CchHHHHHHHHHHHHHhhCCcccccc----cHHHHHHHhccCCCeehH-HHHHHHhhccccC
Confidence 4667789999999885 79999999999999999988754333 34444554432 34332 3566777776543
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccch---hhhHHHHHHhhcccCCCcHHHHHHHHHH
Q 000941 202 SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHL---GDTVPVLIDYCTSASENDEELREYSLQA 277 (1215)
Q Consensus 202 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l---~~iip~ll~~~~~~~~~d~elre~al~~ 277 (1215)
..+-..+++.+.+.+.+... .....+|+.++.... ......|- .--+.-+--++. |+|..+|=.++-+
T Consensus 251 -PRLgKKLieplt~li~sT~A----mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fie---dsDqNLKYlgLla 322 (877)
T KOG1059|consen 251 -PRLGKKLIEPITELMESTVA----MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIE---DSDQNLKYLGLLA 322 (877)
T ss_pred -chhhhhhhhHHHHHHHhhHH----HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhh---cCCccHHHHHHHH
Confidence 23455666667666654332 223446666655531 11111222 222333333444 6788899999999
Q ss_pred HHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHH
Q 000941 278 LESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1215)
Q Consensus 278 l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li 357 (1215)
+.-+....|+.+..|-+-|+.. +. |.|. .+|-.|..++..++
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrc----L~--------------------------------DkD~--SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRC----LD--------------------------------DKDE--SIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHH----hc--------------------------------cCCc--hhHHHHHHHHHHHh
Confidence 9999999998887776655443 31 1111 57888888888877
Q ss_pred hhCchhhHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHH
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFKERE-ENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~d~e-~~Vr~~~~~~l~~l~~~ 400 (1215)
.. .-+..+...|+..+-..+ ...|.+.+.-+..++.+
T Consensus 365 sk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 365 SK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred hh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 63 223345555555543333 46677666655555543
No 65
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.015 Score=71.87 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=113.5
Q ss_pred chHHHHHHhcCC----CchhHhhHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHH
Q 000941 849 HIENVIIESFQS----PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSS 924 (1215)
Q Consensus 849 ~l~~~ll~~l~~----~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~ 924 (1215)
.+.+.+.+.+.+ .+++++.||..|||+++.-+- .|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-----------------------------------------~f 957 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-----------------------------------------EF 957 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-----------------------------------------HH
Confidence 345556666643 358999999999998773210 11
Q ss_pred HHHHHHHHHhhcc-CCccchhhHHHHHhhhccccCCC---cchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhh
Q 000941 925 VEKILNLLFNHCE-SEEEGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEII 1000 (1215)
Q Consensus 925 ~~~i~~~L~~~~~-~~~e~~r~~aae~Lg~l~~~~~~---~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l 1000 (1215)
.+.-++.||...+ .+.+-+|.++.-++|-|+...|. ..-++|+..+.+.++.+|.+++-.+-|+|-..-- -.
T Consensus 958 ces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi----KV 1033 (1251)
T KOG0414|consen 958 CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI----KV 1033 (1251)
T ss_pred HHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh----Hh
Confidence 2222334444443 55678899999999999987665 4567889999999999999999999988865421 13
Q ss_pred hHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHH
Q 000941 1001 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQ 1051 (1215)
Q Consensus 1001 ~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~ 1051 (1215)
+..++.+..+|.|++.+||..|-.-+..+++. ++.+...||+++.+|-+-
T Consensus 1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k-~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSSK-GNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-ccchhhhchHHHHhhccC
Confidence 44577788899999999999999888776654 488888888887776543
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00022 Score=83.91 Aligned_cols=202 Identities=19% Similarity=0.134 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-hhH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRV 82 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~~~ 82 (1215)
-.++.++....+++|-+|-||+-++. .+. .+....++.+.+.++++|.++.||..|+-|+..+-..-+. -.-
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~-~l~------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~ 158 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMG-CLR------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED 158 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhcee-eEe------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence 45677777889999999999988762 222 3466788999999999999999999999999988643222 122
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
..+++.|...+.+.++.+-..|.-+|..+.+.-+. .......+.++-.++.++.. .....-+.+|..+.+.+.+
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~e-----c~EW~qi~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNE-----CTEWGQIFILDCLAEYVPK 232 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHH-----hhhhhHHHHHHHHHhcCCC
Confidence 47788888888877777655566666666654432 01111223333344444432 2334455666666666555
Q ss_pred hhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHhhc
Q 000941 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---DLLAKATIEVVRNLRS 219 (1215)
Q Consensus 163 ~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~~~~l~~~ll~~l~~ 219 (1215)
.- .....+++.+.+.+.+..+.|--.+...+-.+..+..+ .++..+-+.++..+..
T Consensus 233 d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred Cc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc
Confidence 32 34567888888889888877777777777777766655 3455555555544443
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.014 Score=68.02 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHH
Q 000941 190 SVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEE 269 (1215)
Q Consensus 190 a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~e 269 (1215)
|+.+|+.|+ ..++-.++.+.++..+.+.. +=+|..++.++--+...-|..+.|.++. +.+-+. |.|+.
T Consensus 129 AL~GLS~fv---TpdLARDLa~Dv~tLL~ssk--pYvRKkAIl~lykvFLkYPeAlr~~Fpr----L~EkLe---DpDp~ 196 (877)
T KOG1059|consen 129 ALSGLSCIV---TPDLARDLADDVFTLLNSSK--PYVRKKAILLLYKVFLKYPEALRPCFPR----LVEKLE---DPDPS 196 (877)
T ss_pred eeccccccc---CchhhHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhhHhHhhhHHH----HHHhcc---CCCch
Confidence 444444443 34444455566666665543 3577777777777766666666665554 444454 67888
Q ss_pred HHHHHHHHHHHHHHhChhhhcccHHHHHHHH
Q 000941 270 LREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1215)
Q Consensus 270 lre~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1215)
+..+|...+-.+++..|+..-++-|.++.++
T Consensus 197 V~SAAV~VICELArKnPknyL~LAP~ffkll 227 (877)
T KOG1059|consen 197 VVSAAVSVICELARKNPQNYLQLAPLFYKLL 227 (877)
T ss_pred HHHHHHHHHHHHHhhCCcccccccHHHHHHH
Confidence 9999999999999999987666665555544
No 68
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.30 E-value=6.6e-06 Score=73.20 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHH
Q 000941 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1215)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa 350 (1215)
|..++.++..++..+++.+.+|+++|++.++..+. |..|+||.+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~----------------------------------D~d~rVRy~Ac 48 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD----------------------------------DQDSRVRYYAC 48 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC----------------------------------CCcHHHHHHHH
Confidence 67789999999999999999999999999998773 12389999999
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 000941 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1215)
Q Consensus 351 ~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~ 398 (1215)
++|..+....++.+-+++..+++.|.+.+.|++++||..+ +.+..++
T Consensus 49 EaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 49 EALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 9999999888777777999999999999999999999875 4444443
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0087 Score=70.76 Aligned_cols=447 Identities=12% Similarity=0.148 Sum_probs=239.3
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh
Q 000941 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG 250 (1215)
Q Consensus 171 ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~ 250 (1215)
+...+-+.|++++.-+---|+ ..++..++.+....+.|.+-+.+++.+ +-+|+.|+.|.-.+.+..|.-..-|++
T Consensus 108 ltNslknDL~s~nq~vVglAL---~alg~i~s~EmardlapeVe~Ll~~~~--~~irKKA~Lca~r~irK~P~l~e~f~~ 182 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLAL---CALGNICSPEMARDLAPEVERLLQHRD--PYIRKKAALCAVRFIRKVPDLVEHFVI 182 (866)
T ss_pred HHHHHHhhccCCCeeehHHHH---HHhhccCCHHHhHHhhHHHHHHHhCCC--HHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence 344455556666554544444 444555677877788888888887754 368889999998888877755443333
Q ss_pred hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh---hcccHHHHHHHHHHHh--ccCCCCCCCCCCCcccccccc
Q 000941 251 DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD---ISSYCDEILHLTLEYL--SYDPNFTDNMEEDSDDEAYEE 325 (1215)
Q Consensus 251 ~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~---~~~~l~~ii~~~l~~l--~~dpn~~~~~d~d~~~~~~~~ 325 (1215)
... +.+. +-+..+--+.+..+..++...|+. ++..++.++..+.+.. .|.|.|+.
T Consensus 183 ~~~----~lL~---ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv------------- 242 (866)
T KOG1062|consen 183 AFR----KLLC---EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV------------- 242 (866)
T ss_pred HHH----HHHh---hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc-------------
Confidence 332 2232 234444444555566666665532 2223344444443332 24443321
Q ss_pred cchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCch---hhHHHHHHHHHHHHhhhcccchhHHHHH-HHHHHHHHHHh
Q 000941 326 EEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE---MLSKLYEEACPKLIDRFKEREENVKMDV-FNTFIELVRQT 401 (1215)
Q Consensus 326 ~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~---~l~~~~~~i~p~Li~~~~d~e~~Vr~~~-~~~l~~l~~~~ 401 (1215)
..-.|. | +.-...+.|+-+-...++ .+.+++..+. +-.|.+.++=.++ ++|.-++..--
T Consensus 243 ----------~gi~dP-F-LQi~iLrlLriLGq~d~daSd~M~DiLaqva-----tntdsskN~GnAILYE~V~TI~~I~ 305 (866)
T KOG1062|consen 243 ----------HGISDP-F-LQIRILRLLRILGQNDADASDLMNDILAQVA-----TNTDSSKNAGNAILYECVRTIMDIR 305 (866)
T ss_pred ----------cCCCch-H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHH-----hcccccccchhHHHHHHHHHHHhcc
Confidence 111111 2 122233444444444432 2222222221 1134444433322 22333332211
Q ss_pred cccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC
Q 000941 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS 481 (1215)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~ 481 (1215)
..+ .| .---++++.+.|..++-..|-.++..|..++..-|...+.|=. .|..||+|+.
T Consensus 306 -----------~~~---~L---rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~----tIleCL~DpD- 363 (866)
T KOG1062|consen 306 -----------SNS---GL---RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS----TILECLKDPD- 363 (866)
T ss_pred -----------CCc---hH---HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH----HHHHHhcCCc-
Confidence 001 12 1233577888888877788888899888888877776666665 4557888865
Q ss_pred cchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHH
Q 000941 482 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1215)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1215)
..+|..|+.+.-.++... .+..++..++.++.......+.....-+..+++.+.|. -.=|++.++
T Consensus 364 -~SIkrralELs~~lvn~~-------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~-------k~W~idtml 428 (866)
T KOG1062|consen 364 -VSIKRRALELSYALVNES-------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD-------KRWHIDTML 428 (866)
T ss_pred -HHHHHHHHHHHHHHhccc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence 688999999988887642 25566666666665444444555555555666655442 122444444
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccc-hhhhhHHHHHHh----hccchhHHHHHHHHHHHH---cCCCC
Q 000941 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDR----MGNEITRLTAVKAFAVIA---ASPLH 633 (1215)
Q Consensus 562 ~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~-~~~~~l~~L~~~----L~~e~~r~~a~~al~~i~---~s~~~ 633 (1215)
.. +... -.-|+..+...+-.++......... ...+++..+... .+++..-..++|+||+-. ..+.+
T Consensus 429 ~V-l~~a-----G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~ 502 (866)
T KOG1062|consen 429 KV-LKTA-----GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGAN 502 (866)
T ss_pred HH-HHhc-----ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCcc
Confidence 32 2211 2346666677777776665232322 344444444432 456666778999999744 11101
Q ss_pred --CchhHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHH
Q 000941 634 --IDLTCVLEHVIAELTAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707 (1215)
Q Consensus 634 --~~~~~~l~~~l~~L~~~L~~--~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~ 707 (1215)
.....--.+++..|..++.. .+...|.-++.++.+|..+.++. .+.++.++.. +..+-|..+.|-+++.
T Consensus 503 ~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~---~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 503 EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISS---YKSSLDTELQQRAVEY 575 (866)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHH---hcccccHHHHHHHHHH
Confidence 11111124566666666653 35778899999999998776653 1233444433 3334455555555543
No 70
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00031 Score=74.51 Aligned_cols=391 Identities=15% Similarity=0.148 Sum_probs=215.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh-hccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR-FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~-~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
....++..++++.. ..+..+-.++|.++-..+.+ +.-.+..+=+.+.+++. +..+++-.+..++-+++.....
T Consensus 86 s~epvl~llqs~d~--~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt----d~vevqcnaVgCitnLaT~d~n 159 (550)
T KOG4224|consen 86 SNEPVLALLQSCDK--CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT----DGVEVQCNAVGCITNLATFDSN 159 (550)
T ss_pred hhhHHHHHHhCcch--hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC----CCcEEEeeehhhhhhhhccccc
Confidence 34444555555542 56667777888777766532 23344555667777765 4566666555565555543211
Q ss_pred hhc-ccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHH
Q 000941 288 DIS-SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 288 ~~~-~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
..+ .....+.+ +.++-+ + .| .+||+-+..+|..+-..+...-.-
T Consensus 160 k~kiA~sGaL~p-ltrLak----s--------------------------kd----irvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 160 KVKIARSGALEP-LTRLAK----S--------------------------KD----IRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred hhhhhhccchhh-hHhhcc----c--------------------------ch----hhHHHHHHHHHHHhhhhhhhhhhh
Confidence 000 01111111 222221 0 00 178888888877765544322122
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHH
Q 000941 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1215)
Q Consensus 367 ~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~ 446 (1215)
.-..-+|.|++.++..+..||..+..+++.+.-.-. .++.|.+.=|.+++.+...+.+.+++++..|
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-------------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA 271 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-------------ARKILAQAEPKLVPALVDLMDDGSDKVKCQA 271 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-------------HHHHHHhcccchHHHHHHHHhCCChHHHHHH
Confidence 233457888888888889999888777665532211 2345666668999999999999999998777
Q ss_pred HHHHHHHHHhCchhhhhhhhhh-----hHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc
Q 000941 447 FSVLRELVVVLPDCLADHIGSL-----IPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 521 (1215)
Q Consensus 447 ~~~l~~L~~~~~~~l~~~~~~l-----v~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 521 (1215)
-.+|+.++.. ..|..++ +|.+.+.++++. .....+...+++.+. -|+-+...-.-..++.+++..+.
T Consensus 272 ~lALrnlasd-----t~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~ 343 (550)
T KOG4224|consen 272 GLALRNLASD-----TEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLR 343 (550)
T ss_pred HHHHhhhccc-----chhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhcc-cccCcccceecccchhHHHHHHh
Confidence 7778777643 1222222 466666666544 233344445554442 22221110001123333444443
Q ss_pred CC-chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH-HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccch
Q 000941 522 ER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAE 599 (1215)
Q Consensus 522 d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~ 599 (1215)
-. +.+++..|..++-+++...+... ..+.. .-+|.+...+. |...+|++.--.|+++++-+- ..+.+
T Consensus 344 ~~dnEeiqchAvstLrnLAasse~n~-------~~i~esgAi~kl~eL~l--D~pvsvqseisac~a~Lal~d--~~k~~ 412 (550)
T KOG4224|consen 344 AGDNEEIQCHAVSTLRNLAASSEHNV-------SVIRESGAIPKLIELLL--DGPVSVQSEISACIAQLALND--NDKEA 412 (550)
T ss_pred cCCchhhhhhHHHHHHHHhhhhhhhh-------HHHhhcCchHHHHHHHh--cCChhHHHHHHHHHHHHHhcc--ccHHH
Confidence 22 23588899999888875332211 10000 12333344444 667888888778888775432 22221
Q ss_pred h--hhhHHHHHHhhc--cchhHHHHHHHHHHHHcCCCCCchhHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000941 600 L--PACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCV-------LEHVIAELTAFLRKANRALRQATLGTMNS 668 (1215)
Q Consensus 600 ~--~~~l~~L~~~L~--~e~~r~~a~~al~~i~~s~~~~~~~~~-------l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 668 (1215)
+ ..++|+|..... ++.+|-+|..+|+++.... .+...+ ...+-..|..++.+.+...|..+..++-.
T Consensus 413 lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v--~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~q 490 (550)
T KOG4224|consen 413 LLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV--EHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQ 490 (550)
T ss_pred HhhcCCcceeecccCccchhhcccHHHHHHhhhhhh--HHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 234555555543 4567888999998876431 011110 12344456677777777777777777777
Q ss_pred HHHHhC
Q 000941 669 LVVAYG 674 (1215)
Q Consensus 669 l~~~~~ 674 (1215)
+++...
T Consensus 491 Lle~h~ 496 (550)
T KOG4224|consen 491 LLEDHD 496 (550)
T ss_pred HHHhCC
Confidence 776643
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.13 E-value=0.00017 Score=87.84 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=168.2
Q ss_pred chhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC---hh----hHHHHHHHHHH
Q 000941 19 DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS---EP----RVVEMTDKLCI 91 (1215)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~---~~----~~~~lv~~L~~ 91 (1215)
+-|.-|+.-| ..+.. ..-|+..+++|++.++.+++|+..+||-+|+.+|..+..-++ .. ..+.+.+.|-.
T Consensus 438 ~tK~~ALeLl-~~lS~--~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 438 QTKLAALELL-QELST--YIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hhHHHHHHHH-HHHhh--hcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 3455565544 44432 334678899999999999999999999999999998765433 32 23456666666
Q ss_pred HhcCCC-cchhhHHHHHHHHHHh------------------ccCch--------hhHHHHHHhHhHHHHhhhhccCCChh
Q 000941 92 KLLNGK-DQHRDIASIALKTIIA------------------EVTTS--------SLAQSIHTSLTPQLTKGITLKDMNTE 144 (1215)
Q Consensus 92 ~~~~~~-~~~r~~a~~aL~~~i~------------------~~~~~--------~~~~~~~~~l~p~L~~~l~~~~~~~~ 144 (1215)
...+.+ ..+|-..+..|..+.. +.+.+ .....-+...+-+++..+-.++ .+.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~ 593 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPI 593 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chH
Confidence 666633 3355433333321110 11110 1111223333344444443333 578
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCC
Q 000941 145 IRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAK 223 (1215)
Q Consensus 145 v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~~l~~~~~~ 223 (1215)
|+..-++-++.|+..||.. ..-+.|+..++..|++.++.+|..=+..|..++.+++.. .=+-++|.+.++|.++.+
T Consensus 594 Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE- 670 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEE- 670 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcch-
Confidence 9999999999999999985 356778999999999999999998888888777777766 334578888899988764
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
.+...+++++..+++..--+ .+++-+++....-.+- ..+.=+|.+++..+....+..
T Consensus 671 -~Viv~aL~~ls~Lik~~ll~-K~~v~~i~~~v~PlL~---hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 671 -AVIVSALGSLSILIKLGLLR-KPAVKDILQDVLPLLC---HPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred -hhHHHHHHHHHHHHHhcccc-hHHHHHHHHhhhhhee---CchHHHHHHHHHHHHHHHhhh
Confidence 57778899999998854322 3455555444444443 356678998888777776654
No 72
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.037 Score=64.85 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=117.7
Q ss_pred HHHHHHhhccCC-ccchhhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHH
Q 000941 928 ILNLLFNHCESE-EEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISS 1006 (1215)
Q Consensus 928 i~~~L~~~~~~~-~e~~r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~ 1006 (1215)
.++.++.-..+. .|.+.|-.+-.+.-.....-+..=|.+.+++.+..|-.|+..|-++.-.....+. ...+.+
T Consensus 485 aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~ 558 (929)
T KOG2062|consen 485 AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRR 558 (929)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHH
Confidence 334444443332 3455445444444444444456668899999999999999888777655544432 134666
Q ss_pred HHH-hccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHH
Q 000941 1007 FLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECV 1085 (1215)
Q Consensus 1007 ~l~-~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l 1085 (1215)
+|. +.+|.|.+|||+|..+|+-..-..|+.... ++..|-..- .-.+|=.|.-++
T Consensus 559 lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s----~V~lLses~---------------------N~HVRyGaA~AL 613 (929)
T KOG2062|consen 559 LLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPS----TVSLLSESY---------------------NPHVRYGAAMAL 613 (929)
T ss_pred hhcccccccchHHHHHHHHHheeeEecChhhchH----HHHHHhhhc---------------------ChhhhhhHHHHH
Confidence 776 588999999999999999887777776222 222221110 122343332222
Q ss_pred HHHHhhcccCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCc
Q 000941 1086 DTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQ 1156 (1215)
Q Consensus 1086 ~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~ 1156 (1215)
. -.|.+.-+ .+-+ +.+.--.+| ..=||.-++..+.-+...+-....++...+.+.|.++++.|..+
T Consensus 614 G---IaCAGtG~-~eAi-~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 614 G---IACAGTGL-KEAI-NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred h---hhhcCCCc-HHHH-HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 2 12332222 2222 122232457 44488888888888888888888899999999999998877533
No 73
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.046 Score=64.18 Aligned_cols=150 Identities=14% Similarity=0.216 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhh
Q 000941 144 EIRCECLDILCDVLHKFGNLMSND----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLR 218 (1215)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~~l~~~----~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~~l~ 218 (1215)
.-.++|+.+++.+.. +-....+. ..=++..+++.++++---+|.||+..++.+..-.++. +.-+..+.....++
T Consensus 431 rq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~ 509 (970)
T COG5656 431 RQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLK 509 (970)
T ss_pred HHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 344566666666655 22222222 2335667778888877789999999999997666665 45566677777777
Q ss_pred cCCCChHHHHHHHHHHHHHHhh--hhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHH
Q 000941 219 SKGAKPEMIRTNIQMVGALSRA--VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI 296 (1215)
Q Consensus 219 ~~~~~~~~~~~~i~~l~~l~~~--~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~i 296 (1215)
++.. .++-++--++..+... ...+|..|++.+|+-++..-+. -+-+ ..-.+++.|+.+.++++.||-+++
T Consensus 510 nn~l--pv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~--feiD----~LS~vMe~fVe~fseELspfa~eL 581 (970)
T COG5656 510 NNHL--PVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT--FEID----PLSMVMESFVEYFSEELSPFAPEL 581 (970)
T ss_pred cCCc--chhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc--ccch----HHHHHHHHHHHHhHHhhchhHHHH
Confidence 7544 3444544455544443 3468899999999999876542 1222 234568899999999999999988
Q ss_pred HHHHHH
Q 000941 297 LHLTLE 302 (1215)
Q Consensus 297 i~~~l~ 302 (1215)
...+.+
T Consensus 582 a~~Lv~ 587 (970)
T COG5656 582 AGSLVR 587 (970)
T ss_pred HHHHHH
Confidence 876654
No 74
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.036 Score=61.60 Aligned_cols=225 Identities=19% Similarity=0.149 Sum_probs=115.0
Q ss_pred HHHHHHhhhcccch-hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHH
Q 000941 371 ACPKLIDRFKEREE-NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSV 449 (1215)
Q Consensus 371 i~p~Li~~~~d~e~-~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~ 449 (1215)
..+.....-+|.++ -||.+++++++..+-+.+. ..-...+..-...+...+.++...+|..++..
T Consensus 391 ~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l--------------r~d~~fv~~aa~~il~sl~d~~ln~r~Kaawt 456 (728)
T KOG4535|consen 391 LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL--------------RQDVIFVADAANAILMSLEDKSLNVRAKAAWS 456 (728)
T ss_pred hhHHHHhcccchHHHHHHHHHHhhceeEEeccch--------------hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHH
Confidence 34444444455543 3677777666555433221 01122334445566666667666778777777
Q ss_pred HHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHH
Q 000941 450 LRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTA 529 (1215)
Q Consensus 450 l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~ 529 (1215)
++.+...+ -+.. ++++..+..+.+.++. .++.....+-.| .+||..
T Consensus 457 lgnITdAL-------------------~~~~--Ps~~s~~eR~sg~ll~------------~~~~~A~~~~Ad-~dkV~~ 502 (728)
T KOG4535|consen 457 LGNITDAL-------------------IVNM--PTPDSFQERFSGLLLL------------KMLRSAIEASAD-KDKVKS 502 (728)
T ss_pred hhhhHHHH-------------------HcCC--CCchHHHHHHHHHHHH------------HHHHHHHHhhhh-hhhhhh
Confidence 77665432 1111 3333334444333322 111111122222 357888
Q ss_pred HHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHhccCccc--chhhhhH
Q 000941 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN---QDQDQEVKECAISCMGLVISTFGDNLG--AELPACL 604 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~---~d~~~~Vr~~Ai~~lg~l~~~~~~~l~--~~~~~~l 604 (1215)
.|++.++++...+.+.. .+-...+++.-+..+.. ......||=+|++++|.+.++-.-.+. +--+.++
T Consensus 503 navraLgnllQvlq~i~-------~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 503 NAVRALGNLLQFLQPIE-------KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred HHHHHHhhHHHHHHHhh-------hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 88888887776664421 12223333332222221 123477999999999999987532222 2445666
Q ss_pred HHHHHhh---ccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHH
Q 000941 605 PVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRK 653 (1215)
Q Consensus 605 ~~L~~~L---~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~ 653 (1215)
++|+..+ +|=-.|..|..+|..... ..++...++-....+...|.+
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~---re~~~d~~~Lsw~~lv~aLi~ 624 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGK---REQYGDQYALSWNALVTALQK 624 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCC---cccchhHHhHHHHHHHHHHHH
Confidence 7666554 344467777777654432 233444444444444444443
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.06 E-value=3e-05 Score=69.02 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc
Q 000941 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
.|+.++.++.+++.+.|..+.+|++.|+|.++..+. |.|..+|.+|.+++..+++.++.++-+|++++++.+.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~---D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFD---DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367889999999999999999999999999999998 78999999999999999999999999999999999999874
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0094 Score=72.05 Aligned_cols=187 Identities=19% Similarity=0.100 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..++.+...+.++++-+|-||+.++... -+......+++.+.++++|+++.||+.|+-|+..+-+.-+.-...
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~ 164 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE 164 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc
Confidence 3567788889999999999999988322 134677889999999999999999999999999997543333333
Q ss_pred H-HHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 84 E-MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 84 ~-lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
. .+..+...+.+.++.+-.-|..+|..+..+... .+...++ ..+|++--... ...+...-.-.+.-+......
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~-~~~~~~~-~~i~~l~~~~~----~~~~~~~~~~~le~L~~~~~~ 238 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPELAH-GYSLEVI-LRIPQLDLLSL----SVSTEWLLLIILEVLTERVPT 238 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhh-hHHHHHH-HHhhhccchhh----hhhHHHHHHHHHHHHHccCCC
Confidence 3 566666667788887777777788877765211 2222222 22333221000 000122222233333333333
Q ss_pred hhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 000941 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 163 ~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
.-. ........+...+.+.++.+=+.|+..+-.+....+..
T Consensus 239 ~~~-s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~ 279 (757)
T COG5096 239 TPD-SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN 279 (757)
T ss_pred CCC-cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc
Confidence 222 33444455555566667777777777776666665554
No 77
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00068 Score=71.38 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=130.3
Q ss_pred chhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccC
Q 000941 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD 140 (1215)
Q Consensus 61 ~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~ 140 (1215)
+|+..|...+-++-.+ ...-+++|...+.+++-+..-.+..-.+.+++.-..++...-+-.-++|++++.|...+
T Consensus 53 dv~e~a~ss~i~meqq-----~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q 127 (526)
T COG5064 53 DVSEEAESSFIPMEQQ-----FYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127 (526)
T ss_pred cccchhhhccCchhHH-----hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc
Confidence 5555555444344322 22234666666555443333344445566554222223333333457799999995433
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---HHH-HHHHHHHHH
Q 000941 141 MNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---DLL-AKATIEVVR 215 (1215)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~~-~~l~~~ll~ 215 (1215)
..-.+.+|..+|..+.......-.- ....-++.+.+.|.+++..||..|+-|||.++.-.+. -.+ ...++.++.
T Consensus 128 -~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 128 -RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred -hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 3456778888888876654332110 1234567788888888999999999999999864332 222 245666666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh
Q 000941 216 NLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1215)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~ 284 (1215)
.+.+....-.+.+.+--+++.+||.- |.--...+.+.+|.+.+.+- ..|+|+---|.+++..++..
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiy---s~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIY---SRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHhccC
Confidence 66654332356677778899999843 22223356778899888776 36788777788888776543
No 78
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.98 E-value=0.0013 Score=80.40 Aligned_cols=262 Identities=17% Similarity=0.192 Sum_probs=174.0
Q ss_pred hhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC---CCCcchhhhhhhHHHH
Q 000941 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH---SPPVFHPYIKALSSPV 516 (1215)
Q Consensus 440 ~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~---~~~~~~~~l~~l~p~l 516 (1215)
..+|..|+.+|..+...... +.-++.++|.+...+.|+. ..+|..|+..+..++... .+..-.-|.+.|+|.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~--a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSE--ADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCch--HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 45788899999988875432 3478999999999999876 689999998888876443 3333334778899999
Q ss_pred HHHhcCC-chHHHHHHHHHHHHHHHh----------ccC------CCc-C-CCCCChhcHHHHHHHH----HHHhhccCC
Q 000941 517 LAAVGER-YYKVTAEALRVCGELVRV----------LRP------SVE-G-LGFDFKPYVQPIYNAI----MSRLTNQDQ 573 (1215)
Q Consensus 517 ~~~l~d~-~~~v~~~al~~l~~l~~~----------~~~------~~~-~-~~~~~~~~l~~l~~~l----~~~l~~~d~ 573 (1215)
...+.|. ...++..-..++..|++. ++. +.+ + ..+.+..+++.|...+ ...+ .|.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl--sd~ 590 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL--SDS 590 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH--cCC
Confidence 9988883 222222222223333221 111 100 0 1233444555544433 3333 366
Q ss_pred CHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccch--hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHH
Q 000941 574 DQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651 (1215)
Q Consensus 574 ~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L 651 (1215)
++-||+.-+..++.++.-+|..=+ -..+|+.|...|++.+ .|-+-...+.-++.--.. ...-+-++|.|.+.|
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSVSEYLLPLLQQGL 665 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeHHHHHHHHHHHhc
Confidence 789999999999999988876322 2456788888887654 333333333222210000 112344688888999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 652 RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 652 ~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.+..+.+-..++.|+..+++.. -+....+-++++.+.|++-.++.-+|+.++.++..+.+.
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998753 266677888999999999999999999999999888763
No 79
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.012 Score=65.99 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=111.3
Q ss_pred hcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhh---ccchhHHHHHHHHHHHHcCC
Q 000941 555 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM---GNEITRLTAVKAFAVIAASP 631 (1215)
Q Consensus 555 ~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L---~~e~~r~~a~~al~~i~~s~ 631 (1215)
+.+..++..+.++. .|++..+|.-|+.++|..+.-.++....+.+..+..+...| .|+.+...++++|..+....
T Consensus 254 ~lL~s~~~~la~ka--~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKA--TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 56777777776654 47778999999999999887666666566666666666554 34667888899999888655
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhc---CCCChhhHHHHHHHH
Q 000941 632 LHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI---SDSDLHMTALALELC 708 (1215)
Q Consensus 632 ~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l---~~~d~~~~~~al~~l 708 (1215)
...++.+|+-++.-.+.++..+.+...|.+++..++.++.-.|..-.....+++...+.+++ .++.+.+ ..++
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v----a~AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV----ARAC 407 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH----HHHH
Confidence 56788999999999999999999999999999999999887776422222344555666654 3444433 3444
Q ss_pred HHHhhc
Q 000941 709 CTLMAD 714 (1215)
Q Consensus 709 ~~l~~~ 714 (1215)
+...+.
T Consensus 408 r~~~~~ 413 (533)
T KOG2032|consen 408 RSELRT 413 (533)
T ss_pred HHHHHh
Confidence 445544
No 80
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00056 Score=80.80 Aligned_cols=218 Identities=20% Similarity=0.215 Sum_probs=155.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~ 221 (1215)
...++..++..|..++++-...-.-....++.+++..+.+.++-|==.|+.++..++...++++++.+.+...+.=+++.
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~ 819 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQ 819 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCC
Confidence 46688889999999988432221235567889999999999998888899999999999999988888876665544433
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHH
Q 000941 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTL 301 (1215)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l 301 (1215)
. +.|-..=++++.+++..|.-+..|...++..++.... +.|.+.|-+++..++.++.......+.++.+++..++
T Consensus 820 ~--d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il 894 (982)
T KOG4653|consen 820 T--DYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLIL 894 (982)
T ss_pred c--cceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2 2232233899999999999889999999999999887 5678899999999999888766555667777777776
Q ss_pred HHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHH----HHHHh
Q 000941 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC----PKLID 377 (1215)
Q Consensus 302 ~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~----p~Li~ 377 (1215)
...+- |.+.-|||+|+.++..++.+.+..+-+++.... ..+.+
T Consensus 895 ~l~~~---------------------------------d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~ 941 (982)
T KOG4653|consen 895 SLETT---------------------------------DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLS 941 (982)
T ss_pred HHHcc---------------------------------CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 66541 123589999999999999877644333332211 11112
Q ss_pred hh-cccchhHHHHHHHHHHHH
Q 000941 378 RF-KEREENVKMDVFNTFIEL 397 (1215)
Q Consensus 378 ~~-~d~e~~Vr~~~~~~l~~l 397 (1215)
.. .++++.+|..+..|+-.+
T Consensus 942 ~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 942 YVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHhcCchhHHHHHHHHHHHHH
Confidence 22 455566666655554444
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0007 Score=77.57 Aligned_cols=287 Identities=18% Similarity=0.220 Sum_probs=159.6
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh---
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--- 243 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--- 243 (1215)
....+...+.....+.+..||+.|+.++=.|.. +-.+-..++....+.+.+.. ..+|..++|++...+..+|.
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~--e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDY--EDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhcCCCccc
Confidence 345555656677778888999999999877776 22222334444555555544 47999999999998887741
Q ss_pred hhcc---chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccC---------C---
Q 000941 244 RFGP---HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYD---------P--- 308 (1215)
Q Consensus 244 ~~~~---~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~d---------p--- 308 (1215)
+... +.+...-.+...+. |-.-.+|=.|..+|+.|-..-. .++.+.+. .+.++.+ |
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~---D~sl~VRV~AaK~lG~~~~vSe----e~i~QTLd--KKlms~lRRkr~ahkrpk~l 341 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVR---DRSLSVRVEAAKALGEFEQVSE----EIIQQTLD--KKLMSRLRRKRTAHKRPKAL 341 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHh---cCceeeeehHHHHhchHHHhHH----HHHHHHHH--HHHhhhhhhhhhcccchHHH
Confidence 2121 23333444444443 3334455555555554422111 12222221 1222200 1
Q ss_pred ----C------CCCCCCCCcccccccccchhhhc----CCCC-CCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHH
Q 000941 309 ----N------FTDNMEEDSDDEAYEEEEEDESA----NEYT-DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACP 373 (1215)
Q Consensus 309 ----n------~~~~~d~d~~~~~~~~~~d~~~~----~~~~-dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p 373 (1215)
. |++|...+ ++|+++..-.. +-|- .-+|.=+.||++|+..++.+..++|.. -.+.+.
T Consensus 342 ~s~GewSsGk~~~advpse----e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~ald 413 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSE----EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALD 413 (823)
T ss_pred HhcCCcccCccccccCchh----hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHH
Confidence 1 11111000 00000000000 0000 012223689999999999999999863 335667
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHH
Q 000941 374 KLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLREL 453 (1215)
Q Consensus 374 ~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L 453 (1215)
.|+..|+|..+.||..++.++..+..+.. .=.++++.++ +.|.|.+..+|++.-.+|...
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~----------------i~eeql~~il----~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLA----------------IREEQLRQIL----ESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhe----------------ecHHHHHHHH----HHHHhcCHHHHHHHHHHHHhc
Confidence 78889999999999999999998887642 1134555544 456777888998877666543
Q ss_pred HHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000941 454 VVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 454 ~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
--.- ...+.-.+..+.+.|.-- +.=|-+.+.+++.+-++|+
T Consensus 474 ~~~d----~~~i~m~v~~lL~~L~ky---PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 474 RVSD----LECIDMCVAHLLKNLGKY---PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred CCCc----HHHHHHHHHHHHHHhhhC---CCCcHHHHHHHHHHhccCh
Confidence 2110 123444455555555421 2335567888888877775
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.95 E-value=0.00078 Score=82.61 Aligned_cols=182 Identities=19% Similarity=0.240 Sum_probs=145.4
Q ss_pred CccHHHHHHHHHHHHHHHhhCc-hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhh
Q 000941 340 DASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1215)
Q Consensus 340 d~swkvR~~Aa~~L~~li~~~~-~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1215)
+-.||-|..|..-+-..++..+ +....++..+...+-.+++|.+-+|-..+.+++..+....+.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~--------------- 328 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP--------------- 328 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch---------------
Confidence 3459999999998888887766 444445666666666678999999988889999888887652
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
....+.-.+++.+...++++....|.+...++..++. .-++..+.+.+...+++++ +..+.++..++...+.
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~kn--p~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKN--PQIKGECLLLLDRKLR 400 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHh
Confidence 2456667777888888898888888888888887776 2357777888888888876 7899999999999998
Q ss_pred cCCCC-cchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 499 SHSPP-VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 499 ~~~~~-~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
..++. ....-+..+.|.+++..+|.+..|+..|+.+++.+.+.++.
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 87743 34446999999999999999999999999999999888754
No 83
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.90 E-value=0.064 Score=73.18 Aligned_cols=536 Identities=15% Similarity=0.219 Sum_probs=282.3
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh----
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR---- 81 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~---- 81 (1215)
+..+++-. ..+..+|++|..-+++.+.......-......++..++..+.|+++-+|-.|+..+......++++.
T Consensus 136 ~k~~~ew~-~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~ 214 (2341)
T KOG0891|consen 136 VKRLIEWL-GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLK 214 (2341)
T ss_pred HHHHHHHh-hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhh
Confidence 34444445 6678889998888888876644333346788999999999999999999999988887665555543
Q ss_pred ---HHHHHHHHHHHhcCCCcc--------------------------hhhHHHHHHH-----HHHhccCc-------hhh
Q 000941 82 ---VVEMTDKLCIKLLNGKDQ--------------------------HRDIASIALK-----TIIAEVTT-------SSL 120 (1215)
Q Consensus 82 ---~~~lv~~L~~~~~~~~~~--------------------------~r~~a~~aL~-----~~i~~~~~-------~~~ 120 (1215)
+...++.--..+.++... .|..-...++ .++....+ ...
T Consensus 215 ~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~ 294 (2341)
T KOG0891|consen 215 PQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKF 294 (2341)
T ss_pred hHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhh
Confidence 222222111111111100 0000000000 00000000 000
Q ss_pred HHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHH---HHHHHHHHHH
Q 000941 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVR---KKSVSCIASL 197 (1215)
Q Consensus 121 ~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vr---k~a~~~l~~l 197 (1215)
...+++..+-.++..+.. +...++..++++.-..+..+.++...++..+...+....-..+ +....|++.+
T Consensus 295 ~~~~l~~~~~~~l~~~~~------~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (2341)
T KOG0891|consen 295 QVKYLHTEMDHLLSILRK------EKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLL 368 (2341)
T ss_pred HHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHH
Confidence 011222222222222221 1144555567777667776666655555555444433222222 2356778888
Q ss_pred HhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcc---------c-----
Q 000941 198 ASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS---------A----- 263 (1215)
Q Consensus 198 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~---------~----- 263 (1215)
+...+...+..+...++..+.+.... ....+++-.++...|. ..+.+.+.++..... .
T Consensus 369 ~~a~~~~~~~~~~~~il~~~~~~~~~----~~l~e~l~~l~~rl~~----l~~~i~~rll~~~~~vl~~~a~~~~~~~~v 440 (2341)
T KOG0891|consen 369 ASALGPADQKDLNKDILEQMFKCTLS----DSLLERLFILSQRIPK----LGQSIQDRLLNMTSQVLSGKAFIQPGQFTV 440 (2341)
T ss_pred hhccCHHHHHhHHHHHHHHHhcCCch----HHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHhCccccCccccCc
Confidence 88888888888878888877664432 1223444444444332 223333333221110 0
Q ss_pred -------------CCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhh
Q 000941 264 -------------SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1215)
Q Consensus 264 -------------~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~ 330 (1215)
.+++..--..++++++.+-..-. ....|+..+++ .++.
T Consensus 441 l~~~~~p~~~~~~~~~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~---~~~~------------------------- 491 (2341)
T KOG0891|consen 441 LPKLAIPKAILQKTGDSTDDIQLAFKTLGGFKFSGY-SLTLFVQQCVD---SYLE------------------------- 491 (2341)
T ss_pred cchhcccchhhhhcccccHHHHHHHHHHhhhhhhhh-hHHHHHHHHHH---HHHh-------------------------
Confidence 00111112234444444432211 11111111111 1111
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHHhhCc-------hhhHHHHHHHHHHHHh-hhcccchhHHHHHHHHHHH-HHHHh
Q 000941 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRP-------EMLSKLYEEACPKLID-RFKEREENVKMDVFNTFIE-LVRQT 401 (1215)
Q Consensus 331 ~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~-------~~l~~~~~~i~p~Li~-~~~d~e~~Vr~~~~~~l~~-l~~~~ 401 (1215)
.+| -.+|..++.++..++.... ..+ ..++.++..+.. ...+.++.+|..++..+.. ..++
T Consensus 492 -------~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~-~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~- 560 (2341)
T KOG0891|consen 492 -------ADD--SEIRKNAALTCCELLKYDIICSQTSPHAL-QVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQ- 560 (2341)
T ss_pred -------ccc--HHHHHHHHHHHHHHHhhhhhhhcccchHH-HHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhh-
Confidence 000 1578888777766664332 112 122233333222 2366667777665544430 0000
Q ss_pred cccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC
Q 000941 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS 481 (1215)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~ 481 (1215)
-.-|..+......+++.....+..+...++.++...|..+-+++...... .+++...
T Consensus 561 --------------------laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~---~~s~l~~ 617 (2341)
T KOG0891|consen 561 --------------------LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE---LLTELEF 617 (2341)
T ss_pred --------------------hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH---Hhchhhh
Confidence 11255556666677777666777777777777665554333444333322 2222221
Q ss_pred cchhHH--HHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHH
Q 000941 482 TSNLKI--EALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1215)
Q Consensus 482 ~~~~~~--~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1215)
+...+. .+...+..++.. .+....+|+.+++-.+...+++....+...++.++++++...+ .....+++.
T Consensus 618 sg~~r~~~~~a~~~~~~i~~-~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-------~~~~~~~~~ 689 (2341)
T KOG0891|consen 618 SGMARTKEESAKLLCELIIS-SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-------EEMVKWVDE 689 (2341)
T ss_pred cchHHhHHHHHHHhhHHHHH-HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-------chhhhccch
Confidence 112232 222223333222 2234567888999888888988888888999999999998764 245566667
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccc--hhhhhHHHHHHhhccc---hhHHHHHHHHHHHH
Q 000941 560 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA--ELPACLPVLVDRMGNE---ITRLTAVKAFAVIA 628 (1215)
Q Consensus 560 l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~--~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~ 628 (1215)
+++.+.+.+...+ ...-|++|..++|.+.+..|-.+.| ..+.++..+.+.++.+ ..|..+++.++...
T Consensus 690 ~~~~~~~~l~~~s-~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 690 LFSLIIKMLQDQS-SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred HHHHHHHHHHHhh-hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 7777777766332 3567899999999999998876666 5677788887766543 46778888888543
No 84
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.029 Score=66.78 Aligned_cols=254 Identities=19% Similarity=0.189 Sum_probs=150.6
Q ss_pred HHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHH-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh
Q 000941 171 LLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL-----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1215)
Q Consensus 171 ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1215)
=++.++..++.. ++..+-.|+.=++.+.....++- .+.++|.++..+++... .++.-.|+.|+..+++.+|..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-FDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhccch
Confidence 345556666655 56666666666665554444442 57899999999988764 578889999999999999976
Q ss_pred hccchh-hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccc
Q 000941 245 FGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1215)
Q Consensus 245 ~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~ 323 (1215)
..-.++ ..||.+++-+.. -+.-++.|.++++++.+.+..|+.+-. -.-+..++.|+.|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~--IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDF----------------- 305 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLT--IEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDF----------------- 305 (1051)
T ss_pred hheeecccchHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHH-----------------
Confidence 444443 478888766652 356679999999999999998864321 1123344445421
Q ss_pred cccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc
Q 000941 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1215)
Q Consensus 324 ~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~ 402 (1215)
-|..+.|.|.......-.. .+|.+. ++-..+|.|...|......+-..+.-|+..++....
T Consensus 306 -----------------FSi~aQR~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 306 -----------------FSIHAQRVALAIAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 0235556655444444333 344443 444567877777755555555566667777776543
Q ss_pred ccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccC----hhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhh
Q 000941 403 NVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKS----IKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSL 476 (1215)
Q Consensus 403 ~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~----~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l 476 (1215)
. +|. .|++.. +.++..+.+.+.-.. -.+..+.+.+|..++...|-.+.. ....|...+...|
T Consensus 368 h-----------~~~-kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il 435 (1051)
T KOG0168|consen 368 H-----------GPD-KLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRIL 435 (1051)
T ss_pred c-----------ChH-HHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHH
Confidence 2 231 233322 566666666654321 235555666676666544443322 3333444444444
No 85
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.88 E-value=0.0014 Score=72.67 Aligned_cols=186 Identities=17% Similarity=0.154 Sum_probs=130.8
Q ss_pred chhHHHHHHHHHHHhccCC-CCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHH
Q 000941 483 SNLKIEALTFTRLVLSSHS-PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1215)
Q Consensus 483 ~~~~~~al~~l~~l~~~~~-~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1215)
...|..+|..+..++..+- ++.+..+...++..+.++++-...+-+.-|+.+++.++-.+++ +..-...+..+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-----g~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-----GEDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-----CccHHHHHHHHH
Confidence 5678999988888876543 3333446788899999999755446667788888888877654 234556777888
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhh---hhHHHHHH--hhc--c----------chhHHHHHHHH
Q 000941 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELP---ACLPVLVD--RMG--N----------EITRLTAVKAF 624 (1215)
Q Consensus 562 ~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~---~~l~~L~~--~L~--~----------e~~r~~a~~al 624 (1215)
|.+...+........+|..++.|+|.+.-..+.... ... .+|..+.. ..+ . .....+|+.++
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~-~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEE-ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 888887776554577899999999988776655432 223 34442221 111 1 23567789999
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Q 000941 625 AVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYG 674 (1215)
Q Consensus 625 ~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 674 (1215)
+-++..-....+...+...++.|..+|.+.+..+|.+|-++|+.+.+...
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 88874321223566778899999999999999999999999999887654
No 86
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.87 E-value=8.6e-06 Score=79.53 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=94.7
Q ss_pred CcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCc----hh---hhhh---------hHhHHHHHHhccCCChHHHHHHH
Q 000941 960 AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPE----KI---DEII---------FPEISSFLMLIKDQDRHVRRAAV 1023 (1215)
Q Consensus 960 ~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~----~~---~~~l---------~~~i~~~l~~l~D~d~~Vr~~a~ 1023 (1215)
..++|.++..+..+...+|.+-||+|||.++++.+ +| .+.| ..++..+..+|.| +.+||..+.
T Consensus 8 ~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~ 86 (169)
T PF08623_consen 8 DQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCH 86 (169)
T ss_dssp HHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHH
Confidence 35789999998888899999999999999999965 22 2222 2334556668999 999999999
Q ss_pred HHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000941 1024 LALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1024 ~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~ 1091 (1215)
.+|..+++..|..+.++++.+.+.+-..+..| +.-...|+..+..-|+-|+++.++.++=..
T Consensus 87 ~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k------~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~ 148 (169)
T PF08623_consen 87 LMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKK------LKENAVKQEIEKQQELIRSVLRAVKALNSK 148 (169)
T ss_dssp HHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----------TTS-HHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHhhcc------CCCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888766432 233456778888899999999999988333
No 87
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0018 Score=68.35 Aligned_cols=262 Identities=18% Similarity=0.197 Sum_probs=151.2
Q ss_pred hhHHHHHHhh---ccchhHHHHHHHHHHHHcCCCCCchhHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000941 602 ACLPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCV--LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 676 (1215)
Q Consensus 602 ~~l~~L~~~L---~~e~~r~~a~~al~~i~~s~~~~~~~~~--l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 676 (1215)
-+.|.+++.+ .++.....|.++|++|+..... + ... =...+|.+.++|.+.+..+|..++.+|+.++-.....
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~-Q-TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ-Q-TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc-c-eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 4556666666 3445677899999999843211 1 111 1246788889999999999999999999987432211
Q ss_pred ----CCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHH
Q 000941 677 ----IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQS 752 (1215)
Q Consensus 677 ----~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~ 752 (1215)
+.-..++++++-+.. +..+..+...+..+|+.+++. ..|...-....+.+|.+.+++.+.. . +.+..
T Consensus 192 RD~vL~~galeplL~ll~s--s~~~ismlRn~TWtLSNlcRG--knP~P~w~~isqalpiL~KLiys~D--~---evlvD 262 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLS--SAIHISMLRNATWTLSNLCRG--KNPPPDWSNISQALPILAKLIYSRD--P---EVLVD 262 (526)
T ss_pred HHHHHhcCchHHHHHHHHh--ccchHHHHHHhHHHHHHhhCC--CCCCCchHHHHHHHHHHHHHHhhcC--H---HHHHH
Confidence 111223444443321 123445666777889999997 4554444567788999999886553 1 11111
Q ss_pred HHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCCchhhHHHH
Q 000941 753 FFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSHLAL 832 (1215)
Q Consensus 753 ~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~lal 832 (1215)
-+=++..-. + . .-.|++++... ++..+++..+..++...+.-|+
T Consensus 263 A~WAiSYls-----------------D--g----------~~E~i~avld~-------g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 263 ACWAISYLS-----------------D--G----------PNEKIQAVLDV-------GIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred HHHHHHHhc-----------------c--C----------cHHHHHHHHhc-------CCcHHHHHHhcCccccccCHHH
Confidence 111111000 0 0 01344443221 1223344444443322344577
Q ss_pred HHHhhhhccCCCCCc----cchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcc--------cchHHHHHHhhccc-chh
Q 000941 833 LCLGEIGRRKDLSSH----EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLS--------KFLPFILDQIDNQQ-KKQ 899 (1215)
Q Consensus 833 ~~lgei~~~~~~~~~----~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~--------~~lp~il~~l~~~~-~~~ 899 (1215)
..+|-|....+.... -.....|..++.++-+.+|+-|.-++.++..||.+ ..+|.++..+..-+ +.+
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 777777655544311 12455566778899999999999999999988855 34577777665533 334
Q ss_pred HHHHHHHHHHH
Q 000941 900 YLLLHSLKEVI 910 (1215)
Q Consensus 900 ~~~l~alke~i 910 (1215)
--.++|+....
T Consensus 387 KEACWAisNat 397 (526)
T COG5064 387 KEACWAISNAT 397 (526)
T ss_pred HHHHHHHHhhh
Confidence 45555554443
No 88
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.85 E-value=0.0002 Score=85.06 Aligned_cols=158 Identities=11% Similarity=0.232 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHH
Q 000941 366 KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVG 445 (1215)
Q Consensus 366 ~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~ 445 (1215)
.+|..+.|.+++.+.-.-..+|..-..++.-++..+ |...+.+.+|.+++.+.+.|.-++..+|..
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v--------------P~~vllp~~~~LlPLLLq~Ls~~D~~v~vs 928 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNV--------------PKQVLLPQFPMLLPLLLQALSMPDVIVRVS 928 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcC--------------CHHhhccchhhHHHHHHHhcCCCccchhhh
Confidence 477888999988886333556777777777777654 555677889999999999999888889999
Q ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC-cchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCc
Q 000941 446 AFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS-TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY 524 (1215)
Q Consensus 446 ~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~ 524 (1215)
.+.++..+....+.....|+..++|.++..-.+.++ ...+|..|+++++.+.+..++..+.||-+.++.++.+.+.|+.
T Consensus 929 tl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 929 TLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred HhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 999999888877777788999999999976555443 2468999999999999988888999999999999999999998
Q ss_pred hHHHHHHHHHHHH
Q 000941 525 YKVTAEALRVCGE 537 (1215)
Q Consensus 525 ~~v~~~al~~l~~ 537 (1215)
..||.+|.++=+.
T Consensus 1009 RlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 1009 RLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHhhh
Confidence 8899999887544
No 89
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.83 E-value=0.0018 Score=71.89 Aligned_cols=210 Identities=15% Similarity=0.189 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhcCC-CcchhhHHHHHHHH-HHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHh
Q 000941 83 VEMTDKLCIKLLNG-KDQHRDIASIALKT-IIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~-~~~~r~~a~~aL~~-~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~ 160 (1215)
..++..++..+.+. ..+.+..|..-|-. .|++ .. .+-.++++.|+-.+++.+.+.. +...+..|+.+|..+++.-
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sf-svWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEG-SF-SVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHcc-ch-hHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhc
Confidence 35666676666543 44556666654443 3433 22 3446667888888888888744 6788999999999999998
Q ss_pred hhhhhhhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 000941 161 GNLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 161 g~~l~~~~~~ll~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
+..|..+.+..+..++..-.+... .+|..+-.|+..++.+.|-.-+..+.+.++. .+. ..--.++.++..+++
T Consensus 362 ~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~--~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADE--PRAVAVIKMLTKLFE 435 (516)
T ss_pred hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----Ccc--hHHHHHHHHHHHHHh
Confidence 888876666666666676666665 5666666777778888877655555554443 222 333455667778888
Q ss_pred hhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh-hhhcccHHHHHHHHHHHh
Q 000941 240 AVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 240 ~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~-~~~~~~l~~ii~~~l~~l 304 (1215)
..+ +.+.+.++.++|.+++..+. ....+|..|.-+|-.++...+ ++|.||+.++-..-++++
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 776 56888999999999999874 567899999999999999999 899999998866555554
No 90
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.089 Score=62.71 Aligned_cols=487 Identities=15% Similarity=0.167 Sum_probs=262.4
Q ss_pred HHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChH
Q 000941 106 IALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQA 184 (1215)
Q Consensus 106 ~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~ 184 (1215)
.|+|.+|..+.-. .-+..+.|.++.+++..+ -+.+.-. ..=+.+++.. .| .....+..++....+++|
T Consensus 32 ~a~kkvIa~Mt~G----~DvSslF~dvvk~~~T~d--lelKKlv----yLYl~nYa~~-~P~~a~~avnt~~kD~~d~np 100 (734)
T KOG1061|consen 32 DAVKKVIAYMTVG----KDVSSLFPDVVKCMQTRD--LELKKLV----YLYLMNYAKG-KPDLAILAVNTFLKDCEDPNP 100 (734)
T ss_pred HHHHHHHhcCccC----cchHhhhHHHHhhcccCC--chHHHHH----HHHHHHhhcc-CchHHHhhhhhhhccCCCCCH
Confidence 4677777666431 124456677777766532 2221111 1111122221 12 223456777888889999
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccC
Q 000941 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~ 264 (1215)
.+|..|+...+.+- -+.+.+.+...+...+++... -+|+++.-+...+-.-.+.-+. -..+++.+-+.+.
T Consensus 101 ~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~--yvRktaa~~vakl~~~~~~~~~--~~gl~~~L~~ll~--- 170 (734)
T KOG1061|consen 101 LIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDP--YVRKTAAVCVAKLFDIDPDLVE--DSGLVDALKDLLS--- 170 (734)
T ss_pred HHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCCh--hHHHHHHHHHHHhhcCChhhcc--ccchhHHHHHHhc---
Confidence 99999998887654 234556677777777776553 6777776666666554333222 2445566666565
Q ss_pred CCcHHHHHHHHHHHHHHHHhChh-hhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH
Q 000941 265 ENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1215)
Q Consensus 265 ~~d~elre~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw 343 (1215)
|+++.+--.|+.++..+.+..|. .......+++.-++..+.. . .-|
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e-------------------c--------------~EW 217 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE-------------------C--------------TEW 217 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH-------------------h--------------hhh
Confidence 57888999999999999988874 2222334444444444420 0 014
Q ss_pred HHHHHHHHHHHHHHhhCch---hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHH
Q 000941 344 KVRRAAAKCLAALIVSRPE---MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~---~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 420 (1215)
. -+..|..+....|. -..++.+.+.| ++.+.+..|-..+.+.+..++..... .-
T Consensus 218 ~----qi~IL~~l~~y~p~d~~ea~~i~~r~~p----~Lqh~n~avvlsavKv~l~~~~~~~~---------------~~ 274 (734)
T KOG1061|consen 218 G----QIFILDCLAEYVPKDSREAEDICERLTP----RLQHANSAVVLSAVKVILQLVKYLKQ---------------VN 274 (734)
T ss_pred h----HHHHHHHHHhcCCCCchhHHHHHHHhhh----hhccCCcceEeehHHHHHHHHHHHHH---------------HH
Confidence 3 34556666666552 12234444444 44666677777777766666554310 00
Q ss_pred HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
...+-.+-+.+...+...+ .....++.=+..+....|..+..+... +.--.+|+ -.++.+-+.++..++..
T Consensus 275 ~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~----Ff~kynDP---iYvK~eKleil~~la~~- 345 (734)
T KOG1061|consen 275 ELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKV----FFCKYNDP---IYVKLEKLEILIELAND- 345 (734)
T ss_pred HHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHe----eeeecCCc---hhhHHHHHHHHHHHhhH-
Confidence 1111122222222222222 344444444444444444433222211 11112232 35777777777666543
Q ss_pred CCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHH
Q 000941 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1215)
Q Consensus 501 ~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~ 580 (1215)
..++++++.+.....+.+.....+++.+++.+.-... .. ..++..+++.++.. . .-|.+.
T Consensus 346 ------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e-----------~~-~~cv~~lLell~~~-~-~yvvqE 405 (734)
T KOG1061|consen 346 ------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE-----------QS-NDCVSILLELLETK-V-DYVVQE 405 (734)
T ss_pred ------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh-----------hh-hhhHHHHHHHHhhc-c-cceeee
Confidence 2366788888888777778888899999998864431 11 45566666666522 1 235566
Q ss_pred HHHHHHHHHHhccCcccchhhhhHHHHH---HhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhH
Q 000941 581 AISCMGLVISTFGDNLGAELPACLPVLV---DRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRA 657 (1215)
Q Consensus 581 Ai~~lg~l~~~~~~~l~~~~~~~l~~L~---~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~ 657 (1215)
++..+-.+....+.. ...+.+.+. +.++++..|.+-+|.+|.-+..- ++....|..++..-...
T Consensus 406 ~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i---------~~a~elL~~f~en~~dE 472 (734)
T KOG1061|consen 406 AIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERI---------ENALELLESFLENFKDE 472 (734)
T ss_pred hhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhcc---------CcHHHHHHHHHhhcccc
Confidence 677777776665433 233444444 45677777888888888766431 12222333333322222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhc--CCCChhhHHHHHHHHHHHhh
Q 000941 658 LRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI--SDSDLHMTALALELCCTLMA 713 (1215)
Q Consensus 658 lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~d~~~~~~al~~l~~l~~ 713 (1215)
.....++.|.+.++-+... + ..-+.+++.+++.- ...++.+|.-++..+.-+..
T Consensus 473 ~~~Vql~LLta~ik~Fl~~-p-~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~ 528 (734)
T KOG1061|consen 473 TAEVQLELLTAAIKLFLKK-P-TETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE 528 (734)
T ss_pred hHHHHHHHHHHHHHHHhcC-C-ccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc
Confidence 2444455555555433321 1 13355666655544 23566777777777766653
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.75 E-value=0.0019 Score=71.58 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=138.3
Q ss_pred HHHHHHHHHhcCC-CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-cccchhHHHHHHHHHHhhccCh--
Q 000941 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSE-- 79 (1215)
Q Consensus 4 ~~l~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~~~l~~l~~~~~~-- 79 (1215)
..+.+++.++++. --+-|--|+..|.+.+..++|..=++...+++..++..|.| .+.-.+..|.+.|.++...-+.
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4577788888665 55778999999999999888877678889999999999999 7888999999999999864332
Q ss_pred -hhHHHHHHHHHHHhcCCCcch-hhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 80 -PRVVEMTDKLCIKLLNGKDQH-RDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 80 -~~~~~lv~~L~~~~~~~~~~~-r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
+..+-.+.+++....+..+.+ |.+.--+++++-...|. .-+..+.|.++. . +...-..++..+..++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-----~~I~~i~~~Ilt--~----D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-----QCIVNISPLILT--A----DEPRAVAVIKMLTKLF 434 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-----hHHHHHhhHHhc--C----cchHHHHHHHHHHHHH
Confidence 334455556665554554443 44444455555545443 123445555554 1 3445556667788888
Q ss_pred HHhhh-hhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 000941 158 HKFGN-LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 158 ~~~g~-~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
++... .+....+.+.+.+++..++.++.|||.|+.||..+...+|.+
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 77654 455778999999999999999999999999999999888843
No 92
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.73 E-value=0.044 Score=63.84 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc--hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
+....++..|+..+..+.....+--+.|+-.++.-... .+....+++.++..+....++.+ ++...+..++.++.++
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs-nP~FnHylFEsi~~li 100 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS-NPRFNHYLFESIGALI 100 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHH
Confidence 34577788888877654333344444444444332222 13344445555554444444444 7889999999999999
Q ss_pred HHhhhh----hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-HH---HHHHHHHHHHHH-hhcCCCChHHHH
Q 000941 158 HKFGNL----MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS-DD---LLAKATIEVVRN-LRSKGAKPEMIR 228 (1215)
Q Consensus 158 ~~~g~~----l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~-~~---~~~~l~~~ll~~-l~~~~~~~~~~~ 228 (1215)
+..... +....+.+.+.+...|+.+-...---+.+.++.+....+ .. .|..+++.++.. +.... ...-
T Consensus 101 r~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~---gniP 177 (435)
T PF03378_consen 101 RFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERR---GNIP 177 (435)
T ss_dssp HHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGST---TTHH
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccC---CCcC
Confidence 986542 335677788888888876655555667888888888776 22 355566666533 22211 1233
Q ss_pred HHHHHHHHHHhhhhhhhc--cchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh-hhcccHHHHHHHHHHHhc
Q 000941 229 TNIQMVGALSRAVGYRFG--PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 229 ~~i~~l~~l~~~~~~~~~--~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l~ 305 (1215)
..+..+.++.+..+..+. +++..+....-..+..+ ..| .+++..+++++.++|. .+.||++.++.+++..+.
T Consensus 178 alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk--~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 178 ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK--AND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T--TCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC--Ccc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 555677788887877664 57777777665656543 122 3588999999999997 489999999999998885
No 93
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.005 Score=73.12 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=152.6
Q ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh---hhHHHHHHHHHHHhcCCCcchhhHHHHHHH---HHHhccCch
Q 000941 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---PRVVEMTDKLCIKLLNGKDQHRDIASIALK---TIIAEVTTS 118 (1215)
Q Consensus 45 ~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~---~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~---~~i~~~~~~ 118 (1215)
....+..+..+.||-.-+|..|.+.+..++++-.. -.-..++....+.+.+.++- +..-|++ .+|+-.
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy---vyLnaI~gv~~Lcevy--- 799 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY---VYLNAIRGVVSLCEVY--- 799 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce---eeHHHHHHHHHHHHhc---
Confidence 34577788889999999999999999999973222 22346666666666554433 3333444 455432
Q ss_pred hhHHHHHHhHhHHHHhhhhcc--CCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 000941 119 SLAQSIHTSLTPQLTKGITLK--DMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1215)
Q Consensus 119 ~~~~~~~~~l~p~L~~~l~~~--~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1215)
=+.++|.+.+.-.+. +...+.+...=+++..++.+.|+....|...++.+++....+|+...|..++..+|.
T Consensus 800 ------~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 800 ------PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred ------chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 245777777633221 112344444448999999999999999999999999999998877889999999998
Q ss_pred HHhhcC---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhcc----chhhhHHHHHHhhcccCCCcHH
Q 000941 197 LASSLS---DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP----HLGDTVPVLIDYCTSASENDEE 269 (1215)
Q Consensus 197 l~~~~~---~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~----~l~~iip~ll~~~~~~~~~d~e 269 (1215)
+..... .+.|.+++..++...+..+ ...+||+|++.+..+.++.|..+.| |+-+....+.++... ++|+.
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~-s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~--~~dd~ 950 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDG-SVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQ--HDDDG 950 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCC-chhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhc--CchhH
Confidence 887654 3467777777777666544 3579999999999999999987777 344555556666553 45555
Q ss_pred HHHHHHHHH
Q 000941 270 LREYSLQAL 278 (1215)
Q Consensus 270 lre~al~~l 278 (1215)
+|-.+-.++
T Consensus 951 ~klhaql~l 959 (982)
T KOG4653|consen 951 LKLHAQLCL 959 (982)
T ss_pred HHHHHHHHH
Confidence 654443333
No 94
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.71 E-value=0.0081 Score=69.82 Aligned_cols=251 Identities=15% Similarity=0.245 Sum_probs=150.2
Q ss_pred hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhH
Q 000941 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1215)
Q Consensus 286 ~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~ 365 (1215)
+.++.|+.+.++..+...+..+.. . +++ .-.+|+-.++....+.+.
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~--------------------ENe-------------ylMk~iMRvl~~~~e~~~ 62 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-A--------------------ENE-------------YLMKCIMRVLSVLQEDIL 62 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-T--------------------C-H-------------HHHHHHHHHHHHSTTTTG
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-c--------------------cch-------------HHHHHHHHHHHHhHHHHH
Confidence 357889999999999988864321 0 011 234455555555555444
Q ss_pred HHHHHHHHHHHhhh-----cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccCh
Q 000941 366 KLYEEACPKLIDRF-----KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSI 440 (1215)
Q Consensus 366 ~~~~~i~p~Li~~~-----~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~ 440 (1215)
++...+++.|+.-+ +-+++.--.-.+++++.+++..... ....+...-+.+++.+...|...-.
T Consensus 63 p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-----------~~~~v~~~E~~L~P~f~~ILq~dV~ 131 (435)
T PF03378_consen 63 PIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-----------DPEAVSQFEEALFPPFQEILQQDVQ 131 (435)
T ss_dssp GGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-----------GHH---HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-----------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444322 3345777788899999999976421 1122334446666666666665544
Q ss_pred hhHHHHHHHHHHHHHhCc-hhhhhhhhhhhHHHHH-hhcCCCCcchhHHHHHHHHHHHhccCCCCcch-hhhhhhHHHHH
Q 000941 441 KTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEK-SLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH-PYIKALSSPVL 517 (1215)
Q Consensus 441 ~~r~~~~~~l~~L~~~~~-~~l~~~~~~lv~~l~~-~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~l~~l~p~l~ 517 (1215)
.----+|++|+.|.+..+ +.+.+....++|.+.. .+++.. .++ =....++..+++.++..... .++..++..+.
T Consensus 132 EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~--gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQ 208 (435)
T PF03378_consen 132 EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERR--GNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQ 208 (435)
T ss_dssp TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGST--TTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccC--CCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHH
Confidence 455567999999999988 5666667777766663 344432 222 12345777777765433322 47889999888
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc
Q 000941 518 AAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1215)
Q Consensus 518 ~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~ 593 (1215)
+.+..+... .+|+..++.++.++.. ..+.||+..++..++.+|+...++.-+| .-+..++.++...|
T Consensus 209 kLi~sk~~D--~~gF~LL~~iv~~~p~------~~l~~yl~~I~~lll~RLq~skT~kf~~-~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 209 KLIASKAND--HYGFDLLESIVENLPP------EALEPYLKQIFTLLLTRLQSSKTEKFVK-RFVVFLSLFAIKYG 275 (435)
T ss_dssp HHHT-TTCH--HHHHHHHHHHHHHS-H------HHHGGGHHHHHHHHHHHHHHC--HHHHH-HHHHHHHHHHHHH-
T ss_pred HHHCCCCcc--hHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHhhCCcHHHHH-HHHHHHHHHHHHcC
Confidence 888766433 5699999999998854 3578999999999999998765544444 34444555544443
No 95
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.70 E-value=6.5e-05 Score=59.75 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l 397 (1215)
|.||+.|+.+|+.+....++.+.++...++|.|+..++|.++.||..++.+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999888889999999999999999999999999999999888653
No 96
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.69 E-value=0.00018 Score=73.40 Aligned_cols=107 Identities=25% Similarity=0.344 Sum_probs=89.5
Q ss_pred cchhhHHHHHhhhccccCCC---cchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChH
Q 000941 941 EGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1017 (1215)
Q Consensus 941 e~~r~~aae~Lg~l~~~~~~---~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~ 1017 (1215)
+.+|+++..++|-|+...|. .++|.+.+.+.++++.+|.+++..+.+++...--.. =..++..++.++.|+|.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHHcCCCHH
Confidence 56899999999999998876 789999999999999999999999999987653222 223458888999999999
Q ss_pred HHHHHHHHHHHHHhc-CcccccchhhhhhHHHHH
Q 000941 1018 VRRAAVLALSTFAHN-KPNLIKGLLPELLPLLYD 1050 (1215)
Q Consensus 1018 Vr~~a~~~L~~~~~~-~p~~i~~~l~~llp~l~~ 1050 (1215)
||..|...|...... .|+.+..++++++-.+-.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 999999999999877 899887777776665543
No 97
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.66 E-value=0.001 Score=81.57 Aligned_cols=149 Identities=23% Similarity=0.352 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1215)
-.|-.-|+.++..+....+..+..+...+.|.++.+++|.-..+|..+..++..++..+ +
T Consensus 309 ~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--------------~------ 368 (815)
T KOG1820|consen 309 INVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--------------P------ 368 (815)
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--------------c------
Confidence 36677888999999888887788888899999999999999999999888888887632 1
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh--hhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC--LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~--l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
+..+.+.+...++++++..|..+..+|.......++. ....+..++|.+....+|.. ..+|..++..++.+.+.|
T Consensus 369 -l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~--~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 369 -LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTD--KDVRKAALEAVAAVMKVH 445 (815)
T ss_pred -HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCc--HHHHHHHHHHHHHHHHHh
Confidence 3456667777889999999999999999988877642 23478889999999988876 789999999999999998
Q ss_pred CCCcchhhhhhhHH
Q 000941 501 SPPVFHPYIKALSS 514 (1215)
Q Consensus 501 ~~~~~~~~l~~l~p 514 (1215)
+...+..++..+-+
T Consensus 446 Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 446 GEEVFKKLLKDLDK 459 (815)
T ss_pred hHHHHHHHHHhhcc
Confidence 86666555544433
No 98
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.63 E-value=0.4 Score=60.10 Aligned_cols=169 Identities=16% Similarity=0.147 Sum_probs=120.9
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc-----cCc-----ccchhHHHHHHHHHHhh
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-----DDV-----AGDVSGLAVKCLAPLVK 75 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-----~D~-----~~~Vq~~A~~~l~~l~~ 75 (1215)
+..+++.+-++...+|..|...|+..+....-.+.....+.++-.++..+ +|= ..-||.+.++.++.+..
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence 45566667889999999998888888876443334344444444444333 332 24799999999999999
Q ss_pred ccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHH
Q 000941 76 KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1215)
Q Consensus 76 ~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1215)
..-+....+.++.+...+..+..+.|.+...+++..+. ... +.....+..+++...+++++. +.+|+..|...+.-
T Consensus 159 ~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~-d~l~~~~~~vl~~~i~~L~ds--~ddv~~~aa~~l~~ 234 (1549)
T KOG0392|consen 159 HMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQ-DLLFQLLNLVLDFVIEGLEDS--DDDVRSVAAQFLVP 234 (1549)
T ss_pred hhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhhhc--chHHHHHHHHHhhh
Confidence 98888889999999888888878889999999998775 222 233345667788888999886 58899999988887
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhh
Q 000941 156 VLHKFGNLMSNDHERLLSALLPQ 178 (1215)
Q Consensus 156 l~~~~g~~l~~~~~~ll~~ll~~ 178 (1215)
+...+.+........++..++..
T Consensus 235 ~~s~~v~l~~~~i~~lv~~l~~~ 257 (1549)
T KOG0392|consen 235 APSIQVKLMVQKIAKLVHTLWSF 257 (1549)
T ss_pred hhHHHHhhhHhHHHHHHHHHHHH
Confidence 77777444444445555544443
No 99
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.41 Score=62.59 Aligned_cols=449 Identities=14% Similarity=0.148 Sum_probs=215.3
Q ss_pred HHHHhccccC--CCChHHHHHHH-HHHHHhccCcccchhHHHHHHHHHHhhccChh-hHHHHHHHHHHHhcCCC-cchhh
Q 000941 28 LLNELNKESF--KADADLEVKLS-NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-RVVEMTDKLCIKLLNGK-DQHRD 102 (1215)
Q Consensus 28 L~~~l~~~~~--~~~~~~~~~i~-~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~-~~~~lv~~L~~~~~~~~-~~~r~ 102 (1215)
..+.+....+ .+.++..+++. ..+...|..+++..|-.+.+.++.++..++.. .+..+.+..+..+.+.. +-.|-
T Consensus 855 ~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ 934 (2067)
T KOG1822|consen 855 ALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRT 934 (2067)
T ss_pred HHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHH
Confidence 3344444444 56666666644 55557888899999999999999999876653 45677777777776544 34566
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHH------------
Q 000941 103 IASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHER------------ 170 (1215)
Q Consensus 103 ~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~------------ 170 (1215)
+-..||+.+-...+. -........-+..++...++.+ .+.|+.-++..+.-++...|+...-+...
T Consensus 935 ghslalg~lhkyvgs-~~s~qhl~t~v~illal~~Ds~-~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~ 1012 (2067)
T KOG1822|consen 935 GHSLALGCLHKYVGS-IGSGQHLNTSVSILLALATDST-SPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSV 1012 (2067)
T ss_pred HHHHHHHHHHHhccC-CCCchhcccHHHHHHHHhhcCC-CchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCC
Confidence 777888877654432 0001112222223333333433 34555555555544444443322111111
Q ss_pred -----------------------HHHHHhh------------------------hhcCChHHHHHHHHHHHHHHHhhcCH
Q 000941 171 -----------------------LLSALLP------------------------QLSANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 171 -----------------------ll~~ll~------------------------~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
+...+-+ .+.++++.+.-.|+.|+-++-...+.
T Consensus 1013 p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr 1092 (2067)
T KOG1822|consen 1013 PTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR 1092 (2067)
T ss_pred CcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch
Confidence 1111111 12223445566666676666655555
Q ss_pred HH-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhH-------------------HHH-HHhhcc
Q 000941 204 DL-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTV-------------------PVL-IDYCTS 262 (1215)
Q Consensus 204 ~~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~ii-------------------p~l-l~~~~~ 262 (1215)
.. ++.++..+...+..+-. -.|++.+.++..+++.-......|-.-+. +.. +..+.
T Consensus 1093 ~~n~~~lV~~L~~~l~s~~~--i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld- 1169 (2067)
T KOG1822|consen 1093 HVNLDSLVLQLCSLLSSSYL--ILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLD- 1169 (2067)
T ss_pred hccHHHHHHHHHHHhcchhh--hhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcC-
Confidence 42 55666666665554322 23444455554444432211111111111 111 11111
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhCh-hhhcccHHHHHHHHHHHhccCCCC--CCCCCCCcccccccccchhhh-cCCCCCC
Q 000941 263 ASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLEYLSYDPNF--TDNMEEDSDDEAYEEEEEDES-ANEYTDD 338 (1215)
Q Consensus 263 ~~~~d~elre~al~~l~~l~~~~~-~~~~~~l~~ii~~~l~~l~~dpn~--~~~~d~d~~~~~~~~~~d~~~-~~~~~dd 338 (1215)
.+.|.++++.-+.+|.++..... +.+..++.-....+-....+.+-- ....|++++ +++..|||. -.-++..
T Consensus 1170 -~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s~~~e~s~~kd~~~~---~~~~~dDdt~~~t~~~~ 1245 (2067)
T KOG1822|consen 1170 -TETDNKLLKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDFSASKELSGEKDEEDE---EQESGDDDTVLTTVSRT 1245 (2067)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccccccccccccccch---hhcccchhhHHhhhccc
Confidence 14566666666666666433322 223333222222221111111110 000111000 000011110 0001111
Q ss_pred ------CCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCC
Q 000941 339 ------EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNN 412 (1215)
Q Consensus 339 ------~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1215)
...-|+-|-.++.|+..++.... ....++...+ ++ ++|. +..
T Consensus 1246 ~~s~p~~qprW~Trvfaa~cv~r~i~~c~-a~~~h~d~~l---a~-------e~k~----------~n~----------- 1293 (2067)
T KOG1822|consen 1246 DDSKPLVQPRWPTRVFAAECVLRIINVCE-AVSAHFDMAL---AS-------EHKL----------ENL----------- 1293 (2067)
T ss_pred cccCCccccccchHHHHHHHHHHHhhhhh-hhhhhhhHHH---HH-------HHHh----------hcc-----------
Confidence 12269999999999988876432 2222222111 00 0000 000
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh----------hhhhhhhhhHHHHHhhcCCCCc
Q 000941 413 ELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC----------LADHIGSLIPGIEKSLNDKSST 482 (1215)
Q Consensus 413 ~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~----------l~~~~~~lv~~l~~~l~d~~~~ 482 (1215)
++.+.+.-++..+++..+..-++.+...|++++..|...+..+... ++.+.+++-..+..++.+. ++
T Consensus 1294 --e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~d-ts 1370 (2067)
T KOG1822|consen 1294 --ERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDD-TS 1370 (2067)
T ss_pred --chhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCC-CC
Confidence 1223455566677777666666777778999999998887754221 2233333333444444443 35
Q ss_pred chhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc
Q 000941 483 SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 521 (1215)
Q Consensus 483 ~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 521 (1215)
+++...+++..+..+.+.-..++. -+.++...+...+.
T Consensus 1371 ~dv~a~acqVcS~wigsgv~~dl~-dl~rVhqLLvssl~ 1408 (2067)
T KOG1822|consen 1371 PDVTAKACQVCSTWIGSGVARDLS-DLSRVHQLLVSSLD 1408 (2067)
T ss_pred hHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHHHhhc
Confidence 788889999888877542211111 24555555555554
No 100
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.60 E-value=0.35 Score=58.58 Aligned_cols=136 Identities=15% Similarity=0.312 Sum_probs=91.4
Q ss_pred chhHhhHHHHHHHhhhhcC--ccc-chHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccC
Q 000941 862 FEEIKSAASYALGNIAVGN--LSK-FLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCES 938 (1215)
Q Consensus 862 ~e~vR~aAa~aLG~l~~~~--~~~-~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~ 938 (1215)
.+-+|..+..+||+++..+ +.+ ++|.+.+.++..
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~------------------------------------------- 980 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYN------------------------------------------- 980 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence 4678899999999988644 333 667666665432
Q ss_pred CccchhhHHHHHhhhcccc---CCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCC
Q 000941 939 EEEGVRNVVAECLGKIALI---EPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD 1015 (1215)
Q Consensus 939 ~~e~~r~~aae~Lg~l~~~---~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d 1015 (1215)
+...+|++..-++|-+|.. ..+.|+|.+...+.++++-+|.-.+--+.-++... +-.+=..++-.|+..+-|.+
T Consensus 981 ~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~ 1057 (1529)
T KOG0413|consen 981 TAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDAN 1057 (1529)
T ss_pred hHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccC
Confidence 1123555555566666652 34578899999999999988855544444444432 22333456778888888999
Q ss_pred hHHHHHHHHHHHHHHh-cCcccccchhhh
Q 000941 1016 RHVRRAAVLALSTFAH-NKPNLIKGLLPE 1043 (1215)
Q Consensus 1016 ~~Vr~~a~~~L~~~~~-~~p~~i~~~l~~ 1043 (1215)
++||+.|-..++.+.. ..|..+..++-+
T Consensus 1058 edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1058 EDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 9999999999999885 456665555444
No 101
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.19 Score=59.34 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=102.7
Q ss_pred cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc-
Q 000941 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP- 458 (1215)
Q Consensus 380 ~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~- 458 (1215)
...++.++.++.+.+..++-+ | +-+|.++-.+.+..-.....+-...+..+.+++....
T Consensus 30 ek~~~~~KIeamK~ii~~mln-G-------------------e~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~ 89 (948)
T KOG1058|consen 30 EKGDDEVKIEAMKKIIALMLN-G-------------------EDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDS 89 (948)
T ss_pred hcCChHHHHHHHHHHHHHHHc-C-------------------CCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCC
Confidence 344566777766655444432 1 1244555444444322222233344556666665432
Q ss_pred -hhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHH
Q 000941 459 -DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 537 (1215)
Q Consensus 459 -~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~ 537 (1215)
|.+-..+--+...+.+-|++++ ..+|-.++.|+..+=+ +..+++++|.+.++++.++.-|+..|+.++..
T Consensus 90 dgkl~~EMILvcna~RkDLQHPN--EyiRG~TLRFLckLkE-------~ELlepl~p~IracleHrhsYVRrNAilaifs 160 (948)
T KOG1058|consen 90 DGKLLHEMILVCNAYRKDLQHPN--EYIRGSTLRFLCKLKE-------PELLEPLMPSIRACLEHRHSYVRRNAILAIFS 160 (948)
T ss_pred CcccHHHHHHHHHHHhhhccCch--HhhcchhhhhhhhcCc-------HHHhhhhHHHHHHHHhCcchhhhhhhheeehh
Confidence 2233334444566666677765 5788888988877622 23578899999999999999999999999888
Q ss_pred HHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Q 000941 538 LVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 586 (1215)
Q Consensus 538 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg 586 (1215)
+.+.. .++.|-.++++...+. ++.|+.-+++|+..+-
T Consensus 161 Iyk~~--------~~L~pDapeLi~~fL~----~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 161 IYKNF--------EHLIPDAPELIESFLL----TEQDPSCKRNAFLMLF 197 (948)
T ss_pred HHhhh--------hhhcCChHHHHHHHHH----hccCchhHHHHHHHHH
Confidence 87762 3466777777765553 2557778888877653
No 102
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.27 Score=56.21 Aligned_cols=480 Identities=15% Similarity=0.150 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
.....+.=.+++++..++...|....-.|..|. ++.++ +.-....++.-+..+.++ ++-.+|+++++.-++.. .+
T Consensus 61 ~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS-~~ted-vlm~tssiMkD~~~g~~~--~~kp~AiRsL~~Vid~~-tv 135 (898)
T COG5240 61 ATATNLFFAILKLFQHKDLYLRQCVYSAIKELS-KLTED-VLMGTSSIMKDLNGGVPD--DVKPMAIRSLFSVIDGE-TV 135 (898)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-hcchh-hhHHHHHHHHhhccCCcc--ccccHHHHHHHHhcCcc-hh
Confidence 334445555666666666666654444444433 22322 223333444444444332 34456777666555441 11
Q ss_pred HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCCh--------H-HHHHHHHH
Q 000941 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ--------A-SVRKKSVS 192 (1215)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~--------~-~vrk~a~~ 192 (1215)
.. ..++ |-+++-+. .+.++..|+-.-..++...-.....+..+..+.++..-+.|. | .---.-..
T Consensus 136 ~~-~er~---l~~a~Vs~--~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYH 209 (898)
T COG5240 136 YD-FERY---LNQAFVST--SMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYH 209 (898)
T ss_pred hh-HHHH---hhhhcccc--chhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHH
Confidence 11 1111 11222222 345555555443344333333333444555555554333321 0 11111234
Q ss_pred HHHHHHhhcCHH--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHH
Q 000941 193 CIASLASSLSDD--LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1215)
Q Consensus 193 ~l~~l~~~~~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el 270 (1215)
++|.+...-..+ ....++.++.....- ....+.+..+-.+.... .+-.+.+.++.|++-..+.+ --+-+
T Consensus 210 alGlLyq~kr~dkma~lklv~hf~~n~sm-----knq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls~---k~emV 280 (898)
T COG5240 210 ALGLLYQSKRTDKMAQLKLVEHFRGNASM-----KNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLSD---KFEMV 280 (898)
T ss_pred HHHHHHHHhcccHHHHHHHHHHhhccccc-----ccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhcC---cchhh
Confidence 555555443322 233455554433311 11112222222222222 22245677888888887763 22333
Q ss_pred HHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHH
Q 000941 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1215)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa 350 (1215)
--.+..+.-++.... --..++.+.+..+..+++. |+ -..|-+|.
T Consensus 281 ~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s-~r---------------------------------v~~rFsA~ 324 (898)
T COG5240 281 FLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKS-TR---------------------------------VVLRFSAM 324 (898)
T ss_pred hHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhc-ch---------------------------------HHHHHHHH
Confidence 333334444444332 0123567777777666651 11 14578899
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHH
Q 000941 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKS 430 (1215)
Q Consensus 351 ~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~ 430 (1215)
+.|..+.-.+|+.+.. ...=+..| ..|.+.++ +..++.++++ +|+ .+.+..+++.
T Consensus 325 Riln~lam~~P~kv~v-cN~evEsL---Isd~Nr~I---styAITtLLK-TGt-----------------~e~idrLv~~ 379 (898)
T COG5240 325 RILNQLAMKYPQKVSV-CNKEVESL---ISDENRTI---STYAITTLLK-TGT-----------------EETIDRLVNL 379 (898)
T ss_pred HHHHHHHhhCCceeee-cChhHHHH---hhcccccc---hHHHHHHHHH-cCc-----------------hhhHHHHHHH
Confidence 9999999999975431 11111222 25544433 2345556664 332 3345566666
Q ss_pred HHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhh
Q 000941 431 INRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIK 510 (1215)
Q Consensus 431 l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~ 510 (1215)
|...+.|-+..-+..+..++..|+..+|..-. .++..+...|.+.. .-..+-.+..++...++..+ ..-+
T Consensus 380 I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p-----~skE 449 (898)
T COG5240 380 IPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL----SYLDFLGSSLLQEG-GLEFKKYMVDAISDAMENDP-----DSKE 449 (898)
T ss_pred HHHHHHhhccCceEEeHHHHHHHHhhCcHHHH----HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCc-----hHHH
Confidence 66666666656667778888888877665432 33344444444432 23455556666666665432 1235
Q ss_pred hhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000941 511 ALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1215)
Q Consensus 511 ~l~p~l~~~l~d~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~ 589 (1215)
..+..++..++|..| ++ +++.++-+-+- +|. ...-..|+..+|..++ |. ..-||.+|+.|+..++
T Consensus 450 raLe~LC~fIEDcey~~I---~vrIL~iLG~E-gP~----a~~P~~yvrhIyNR~i--LE----N~ivRsaAv~aLskf~ 515 (898)
T COG5240 450 RALEVLCTFIEDCEYHQI---TVRILGILGRE-GPR----AKTPGKYVRHIYNRLI--LE----NNIVRSAAVQALSKFA 515 (898)
T ss_pred HHHHHHHHHHhhcchhHH---HHHHHHHhccc-CCC----CCCcchHHHHHHHHHH--Hh----hhHHHHHHHHHHHHhc
Confidence 566666777776543 44 33444333221 222 2233457777776543 22 3579999999998887
Q ss_pred HhccCcccchhhhhHHHHHHhhc--cchhHHHHHHHHHHHH
Q 000941 590 STFGDNLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIA 628 (1215)
Q Consensus 590 ~~~~~~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~ 628 (1215)
-+..+.+.+ +.+-.+|.++++ ++.+|..|.-++..+-
T Consensus 516 ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 516 LNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 776664433 233444455554 3457777655555443
No 103
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.45 Score=57.53 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=200.1
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKE--REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d--~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1215)
+-.+|..-++-+.++..+....++.....+..++...- +.+= .++..-..+...++++....+. .|
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~a-sik~S~~n~ql~~Tss~~igs~s~~l~e-----------~P 544 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSA-SIKLSAPNPQLLSTSSDLIGSLSNWLGE-----------HP 544 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcc-ccccccCChhHHHHHHHHHHHHHHHHhc-----------CC
Confidence 44579988888888888888877766665555444321 1111 1333334445555555544331 12
Q ss_pred hhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 000941 417 RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1215)
Q Consensus 417 ~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1215)
.+++..++.+.+.+.. .+.-+.+...+.+|++..+..+.++...++......+...+..+..+...+..+|-+
T Consensus 545 -----~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyv 617 (982)
T KOG2022|consen 545 -----MYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYV 617 (982)
T ss_pred -----cccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHH
Confidence 1334444555555532 334455667799999999999999999999998888876555556677777888888
Q ss_pred hccCCCCcchhhhhhhHHHHHHHhcCC------ch--HHH-HHHHHHHHHHHHhccCCCc-----CCC--------CCCh
Q 000941 497 LSSHSPPVFHPYIKALSSPVLAAVGER------YY--KVT-AEALRVCGELVRVLRPSVE-----GLG--------FDFK 554 (1215)
Q Consensus 497 ~~~~~~~~~~~~l~~l~p~l~~~l~d~------~~--~v~-~~al~~l~~l~~~~~~~~~-----~~~--------~~~~ 554 (1215)
+.-..|+....|+.+|+..++..++.. .+ +.+ ..-+.+++.+...+..... ... ....
T Consensus 618 ls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il 697 (982)
T KOG2022|consen 618 LSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPIL 697 (982)
T ss_pred HHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHH
Confidence 776667777778888888888766521 11 221 2334566666655433210 000 0122
Q ss_pred hcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcc-cchhhhhHHHHHHhhccchhHHHHHHHHHHHH----c
Q 000941 555 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGNEITRLTAVKAFAVIA----A 629 (1215)
Q Consensus 555 ~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l-~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~----~ 629 (1215)
....++++.+-..+..--.+..|-+.++..++.=+...++.+ .|.++.+.+.+.+...+.. ..++.....++ .
T Consensus 698 ~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~--a~tl~l~~~~l~~~~~ 775 (982)
T KOG2022|consen 698 QVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCL--AVTLSLIAACLLAKST 775 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchH--HHHHHHHHHHHHhhhc
Confidence 345556665544443222345566666665554444444445 5678888888877544421 11111111111 1
Q ss_pred CCCCCc-----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcc--hHHHHH-HHhhhhcCCCChhhH
Q 000941 630 SPLHID-----LTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGAS--AYEVII-VELSTLISDSDLHMT 701 (1215)
Q Consensus 630 s~~~~~-----~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~--~~~~~l-~~l~~~l~~~d~~~~ 701 (1215)
.....+ +...+.+.+-...+.--.++..+...-+.++..+....+.-+... .+..++ .....++..+.+...
T Consensus 776 ~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i 855 (982)
T KOG2022|consen 776 VEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTI 855 (982)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHH
Confidence 111111 111111111111111114567778888889998888876533321 233333 355677888888877
Q ss_pred HHHHHHHHHHhhc
Q 000941 702 ALALELCCTLMAD 714 (1215)
Q Consensus 702 ~~al~~l~~l~~~ 714 (1215)
.++..++..+...
T Consensus 856 ~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 856 RAASQFLTALATY 868 (982)
T ss_pred HHHHHHHHHHHhh
Confidence 7888888887653
No 104
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.48 E-value=0.00079 Score=66.74 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=90.4
Q ss_pred hHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHHH------------------------------------HH-H
Q 000941 167 DHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDL------------------------------------LA-K 208 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~------------------------------------~~-~ 208 (1215)
.+|.+++.++..+..+. +.+|+.++.++|.+++.-+-.+ +. -
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 47999999999998774 6899999999999986433221 11 1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~ 284 (1215)
.+..++..++++.. +..+..+++++..|.++.+.+..||+++++|.+++.++. -++.+||..++-+..++..
T Consensus 87 vi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~---~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT---CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh---CCHHHHHHHHHHHHHHHHH
Confidence 45667777787765 356668899999999999988999999999999999984 4458999999888877653
No 105
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.48 Score=57.32 Aligned_cols=174 Identities=10% Similarity=0.167 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhcccC-----hhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 425 SKIVKSINRQLREKS-----IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~-----~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
.-++..+.+.+.+.. +..-++|+..+...++..++...+.++.++...... +-+..++.+...+...++.+...
T Consensus 461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asi-k~S~~n~ql~~Tss~~igs~s~~ 539 (982)
T KOG2022|consen 461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASI-KLSAPNPQLLSTSSDLIGSLSNW 539 (982)
T ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccc-ccccCChhHHHHHHHHHHHHHHH
Confidence 344455555555443 445577888899999988877777777666554432 11111233434455555554332
Q ss_pred CCCCcchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHH
Q 000941 500 HSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1215)
Q Consensus 500 ~~~~~~~~-~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr 578 (1215)
.+. +| |++.-+|.+++++..+ +...++...+..+|+.++ .++.||.+.++..+.+.+.........|
T Consensus 540 l~e---~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-------~~L~py~d~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 540 LGE---HPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-------ESLDPYADQFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred Hhc---CCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-------hhCchHHHHHHHHHHHHhcccccCchHH
Confidence 211 23 7888899999999754 666778888999998874 4689999999998888887666678899
Q ss_pred HHHHHHHHHHHHhccC-cccchhhhhHHHHHHhh
Q 000941 579 ECAISCMGLVISTFGD-NLGAELPACLPVLVDRM 611 (1215)
Q Consensus 579 ~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L 611 (1215)
.+...++|-+...... ....|+..++..+...+
T Consensus 608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 9999999999988752 33346666665555443
No 106
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.45 E-value=0.0042 Score=63.41 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1215)
+.||.-+..+++.+...+|..++++ +|.+..+++|+++.||..++.++..|+..- ..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik---------------- 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY----LPNLYKCLRDEDPLVRKTALLVLSHLILED--MIK---------------- 59 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--cee----------------
Confidence 5799999999999999999766654 455566679999999999999999998641 111
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHh-CchhhhhhhhhhhHHHHHh
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV-LPDCLADHIGSLIPGIEKS 475 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~-~~~~l~~~~~~lv~~l~~~ 475 (1215)
.-+.++..+...+.|+++.+|..|-.+|.++... .|..+..++++++..+...
T Consensus 60 ~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 60 VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 1234445566677999999999999999999887 5555666666666555443
No 107
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.44 E-value=0.097 Score=64.13 Aligned_cols=367 Identities=16% Similarity=0.178 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh-hhhhhHHHHHHHhc
Q 000941 443 KVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVG 521 (1215)
Q Consensus 443 r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~l~p~l~~~l~ 521 (1215)
-..|+.+|..+++...-...-.-..+++.+.++|...+ ..+.+.++.|+..+.-.. +.-.. .-..++|.+.+.+.
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDREN--EELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhc
Confidence 34667788888775433333345667888888887543 567777888888774321 11111 23457888888887
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccc-
Q 000941 522 ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP--IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA- 598 (1215)
Q Consensus 522 d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~--l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~- 598 (1215)
.+.......+++++-++... ...++.+-+ ++|.+...+.+ +..+..|+..+-.+... +....
T Consensus 342 s~~~~l~~~aLrlL~NLSfd---------~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~d--d~~r~~ 406 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFD---------PELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMD--DEARSM 406 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcC---------HHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccC--HhhHHH
Confidence 77777888888888777521 122322222 45555565652 23445455555444321 11111
Q ss_pred -hhhhhHHHHHHhhcc---chhHHHHHHHHHHHHcCCCCCchhHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000941 599 -ELPACLPVLVDRMGN---EITRLTAVKAFAVIAASPLHIDLTCVLEHVIA--ELTAFLRKANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 599 -~~~~~l~~L~~~L~~---e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~--~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1215)
....++|.+++.+-. +.+....+..+-+++..+ .+...+.+ .|..+++...+.--..-+.++..+..+
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~------rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h 480 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK------RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQH 480 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH------HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 223567777765422 223333444444555332 11111111 011111111111112233455555544
Q ss_pred hCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch-hhhhh--hhhHHHHHHHhhhcccchhhhHH
Q 000941 673 YGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVR--NKVLPQALALIKSSLLQGQALVA 749 (1215)
Q Consensus 673 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~--~~~l~~l~~ll~s~~l~~~~l~~ 749 (1215)
.+. ....+.+.+..+...+...+. -....+++|.+..- ..|+. ...+. -.++|.+.+.+..+......+-.
T Consensus 481 ~~~--~k~~f~~~i~~L~~~v~~~~~--ee~~vE~LGiLaNL--~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 481 DGP--LKELFVDFIGDLAKIVSSGDS--EEFVVECLGILANL--TIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred Cch--HHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhc--ccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 322 122344555555555554442 24566666666543 12221 11121 25666666666433211111111
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCC-chh-
Q 000941 750 LQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDS-STN- 827 (1215)
Q Consensus 750 l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~- 827 (1215)
...++++++... +|.+.++. .+++..++.-+.... +.+
T Consensus 555 ~Vi~~gtla~d~---------------------------------~~A~lL~~-------sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 555 VVILLGTLASDP---------------------------------ECAPLLAK-------SGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred HHHHHHHHHCCH---------------------------------HHHHHHHh-------CChHHHHHHHHHhhCchHHH
Confidence 122333332110 11111111 123444444443222 222
Q ss_pred hHHHHHHHhhhhccCCCC----CccchHHHHHHhcCCCchhHhhHHHHHHHhhhhcC
Q 000941 828 SHLALLCLGEIGRRKDLS----SHEHIENVIIESFQSPFEEIKSAASYALGNIAVGN 880 (1215)
Q Consensus 828 ~~lal~~lgei~~~~~~~----~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~ 880 (1215)
....+.++..+-.|.... ...++...++.++.+.|.+||+.+-.||.-++..+
T Consensus 595 VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 595 VLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 333444445444442211 01357788999999999999999999999877544
No 108
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.42 Score=57.03 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhc--CHH----HHHHHHHHHHH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSL--SDD----LLAKATIEVVR 215 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~--~~~----~~~~l~~~ll~ 215 (1215)
.-.|....-++|.-.+ -.....-.+.+-..++..+++. +..||-.++.++...+.-. +++ +++.+...+.+
T Consensus 501 RiiRRRVa~ilg~Wvs--vq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVS--VQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred hHHHHHHHHHHhhhhh--eechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 3456666666766544 1111234567778888888887 4588999999998877432 233 24555555666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh---hhccc
Q 000941 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR---DISSY 292 (1215)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~---~~~~~ 292 (1215)
.+..... -+.|-..+.+++.+....+..+.||...++.++-...+.. ++.+-+|-+.+.++..+|...+. .+.||
T Consensus 579 ll~~~~e-~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 579 LLKAVEE-CDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHH
Confidence 6655443 2567778899999999999999999999988876666533 34556888889999999987664 45555
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCch---hhHHHHH
Q 000941 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE---MLSKLYE 369 (1215)
Q Consensus 293 l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~---~l~~~~~ 369 (1215)
+=.+++.+ -||+.-+.- |- -+-+..+..+.+...|. .+-.+++
T Consensus 657 L~pVIel~-----~D~~sP~hv--------------------~L---------~EDgmeLW~~~L~n~~~l~p~ll~L~p 702 (978)
T KOG1993|consen 657 LYPVIELS-----TDPSSPEHV--------------------YL---------LEDGMELWLTTLMNSQKLTPELLLLFP 702 (978)
T ss_pred HHHHHHHh-----cCCCCCcee--------------------eh---------hhhHHHHHHHHHhcccccCHHHHHHHH
Confidence 44444432 355421100 00 00122344555655543 2222333
Q ss_pred HHHHHHHhhhcccchh--HHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHH
Q 000941 370 EACPKLIDRFKEREEN--VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAF 447 (1215)
Q Consensus 370 ~i~p~Li~~~~d~e~~--Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~ 447 (1215)
.+.|.+- -.-++ +-..++.++.-+-. + ..+..+...+++.+.+.+.+-..+.-++.+
T Consensus 703 ~l~~~iE----~ste~L~t~l~Ii~sYilLd~----------------~-~fl~~y~~~i~k~~~~~l~dvr~egl~avL 761 (978)
T KOG1993|consen 703 HLLYIIE----QSTENLPTVLMIISSYILLDN----------------T-VFLNDYAFGIFKKLNDLLDDVRNEGLQAVL 761 (978)
T ss_pred HHHHHHH----hhhhhHHHHHHHHHHHHhhcc----------------H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3443331 11122 22344444433321 1 256777888888888888765555666667
Q ss_pred HHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 000941 448 SVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1215)
Q Consensus 448 ~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1215)
.+...++.+.| .+++ +++.++|.+...+-.....+.+....+..++.+
T Consensus 762 kiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi 810 (978)
T KOG1993|consen 762 KIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI 810 (978)
T ss_pred HHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 77777776654 3333 667777777766533322345555555555544
No 109
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.037 Score=62.21 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCC
Q 000941 424 VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPP 503 (1215)
Q Consensus 424 ~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~ 503 (1215)
+..++..+.....+++.+.|..|+..|...+...|.....|.+.++..+...|-|... .++..+++.+|..+.......
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhc
Confidence 4566666777778888899999999999999888888889999999999999988765 788889999988887766666
Q ss_pred cchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCC
Q 000941 504 VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPS 545 (1215)
Q Consensus 504 ~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 545 (1215)
.+.+|+-.+.-.+.....+...+.+..|+..++.+.+..+..
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 777888888888888888878889999999999998876543
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0067 Score=69.89 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHH
Q 000941 373 PKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRE 452 (1215)
Q Consensus 373 p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~ 452 (1215)
.-++..+++...+||..+++++.++-+ | ...-..+.+...+.+.|....+|.+|++++.-
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~e--g------------------~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v 260 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSE--G------------------FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSV 260 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcc--c------------------ccccHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 335556688889999999988877743 1 11113445667778888888999999999888
Q ss_pred HHHhCchhh------hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 000941 453 LVVVLPDCL------ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1215)
Q Consensus 453 L~~~~~~~l------~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1215)
+....|... .++....+..++.++.|.+ -.+|++|...++.+
T Consensus 261 ~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 261 WGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEF 308 (823)
T ss_pred HHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchH
Confidence 888775432 1366777788888888875 57788888777765
No 111
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.43 E-value=0.018 Score=64.04 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=131.4
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHh
Q 000941 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 377 ~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~ 456 (1215)
..+.|+....|..++..+..++.+-. ..+.+.....+++..+.+.++....+.+..|+.++.-++-.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~-------------~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRY-------------LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence 34466668899999988888886532 22356777889999999999876666777788888888777
Q ss_pred Cc--hhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHH--hccCCCCcch---hhhhhhHHHHHHHhcC-------
Q 000941 457 LP--DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV--LSSHSPPVFH---PYIKALSSPVLAAVGE------- 522 (1215)
Q Consensus 457 ~~--~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l--~~~~~~~~~~---~~l~~l~p~l~~~l~d------- 522 (1215)
++ ..-...+..+.|.+...+.|.......|..++.+|+.+ +....++... ..+..++-........
T Consensus 117 lg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 117 LGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 65 33445788899999999998865556777777666554 3333322222 2233222222211111
Q ss_pred -CchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc
Q 000941 523 -RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1215)
Q Consensus 523 -~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~ 593 (1215)
+...+...|+...+-++..+.+ ..+..++...++.+...|. ..+.+||-+|-.+|+-+.+...
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~------~~~~~~~~~~~~~l~~lL~--s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPD------SKLEDLLEEALPALSELLD--SDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhh
Confidence 1246888899988888765532 1345667777888888776 3478999999999998877653
No 112
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.94 Score=58.90 Aligned_cols=341 Identities=16% Similarity=0.150 Sum_probs=183.1
Q ss_pred CChHHHHHHHHHHH--HhccCcccchhHHHHHHHHHHhhccCh------hhHHHHHHHHHHHhc---CC-Ccch-hh---
Q 000941 39 ADADLEVKLSNIVV--QQLDDVAGDVSGLAVKCLAPLVKKVSE------PRVVEMTDKLCIKLL---NG-KDQH-RD--- 102 (1215)
Q Consensus 39 ~~~~~~~~i~~~ll--~~L~D~~~~Vq~~A~~~l~~l~~~~~~------~~~~~lv~~L~~~~~---~~-~~~~-r~--- 102 (1215)
.+.+....+.+.|+ ..|+.++.+||-...-|++.+.+-+.+ .++..+..-++..+. +. ++.. |.
T Consensus 41 ~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~l 120 (1266)
T KOG1525|consen 41 LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYL 120 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHH
Confidence 45566677777777 567899999999999999999875544 233333333333322 21 1211 11
Q ss_pred ---HHHHHHHHHHhccCchhhHHHHHHhHhHHHH----hhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000941 103 ---IASIALKTIIAEVTTSSLAQSIHTSLTPQLT----KGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSAL 175 (1215)
Q Consensus 103 ---~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~----~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~l 175 (1215)
++-+- -.+|-..+. ++.+++.++ ..+.++. +.--...+++++.++...-. ....++.++
T Consensus 121 letl~~~k-~~l~~~l~d-------~~e~~~~~f~~f~d~~~~~~--~~~v~~~~~i~~~li~e~d~----v~~e~L~~l 186 (1266)
T KOG1525|consen 121 LETLAKVK-FCLLMLLED-------CQELVHELFRTFFDLARKGH--PKKVFNMLDIAIMLITEEDT----VQSELLDVL 186 (1266)
T ss_pred HHHHHHhH-HHheeeccc-------hHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhhcc----chHHHHHHH
Confidence 11111 111112221 233333333 3333322 22222255555555544332 345677777
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhhhhhhccchhhhHH
Q 000941 176 LPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG-AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVP 254 (1215)
Q Consensus 176 l~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip 254 (1215)
+..|-.+....++.|...-..++..+++.+...+-..+...+.... .....+..+...+-.+-+..|.- |-.++|
T Consensus 187 l~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip 262 (1266)
T KOG1525|consen 187 LENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIP 262 (1266)
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHH
Confidence 7777766666666666555555555555543333333333332111 11234455566666666655433 566788
Q ss_pred HHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCC
Q 000941 255 VLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANE 334 (1215)
Q Consensus 255 ~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~ 334 (1215)
.+..-+. .++++.|-.|....+.+.......+..-.+.+....+.-+
T Consensus 263 ~l~~eL~---se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~------------------------------ 309 (1266)
T KOG1525|consen 263 QLEFELL---SEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF------------------------------ 309 (1266)
T ss_pred HHHHHHh---cchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh------------------------------
Confidence 8877776 4788899888887777665433222211122222222211
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCC
Q 000941 335 YTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1215)
Q Consensus 335 ~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1215)
.|.+-.||-+..++....+.+.|+..... ...+.-++.+.+++||....-++... .
T Consensus 310 ----~D~~~~vR~~~v~~~~~~l~~~~~~~~~~----~~~~~l~~~~~D~~~rir~~v~i~~~-~--------------- 365 (1266)
T KOG1525|consen 310 ----NDISVEVRMECVESIKQCLLNNPSIAKAS----TILLALRERDLDEDVRVRTQVVIVAC-D--------------- 365 (1266)
T ss_pred ----ccCChhhhhhHHHHhHHHHhcCchhhhHH----HHHHHHHhhcCChhhhheeeEEEEEe-e---------------
Confidence 12233689999999888888888644432 12222234455566554321110000 0
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 415 ~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
-.+.-..++|.+++.+...+.|+.++||..|+..|.++-.
T Consensus 366 -v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 366 -VMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred -hhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 0011234556699999999999999999999998888876
No 113
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.38 E-value=0.025 Score=61.10 Aligned_cols=232 Identities=15% Similarity=0.227 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHhhCc-hhhH-HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHH
Q 000941 343 WKVRRAAAKCLAALIVSRP-EMLS-KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~-~~l~-~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 420 (1215)
+.+|..|..+|..++...| +.+. .-.+.++.-..+|+.|. ..+. .++.++.++++...- +
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~~~~------------~---- 74 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKMKNF------------S---- 74 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhCcCC------------C----
Confidence 4899999999999999887 3332 23455556666777543 3343 347788888753210 1
Q ss_pred HHHHHHHHHHHHHHhcc--cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 421 KQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~--~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
.+....+++.+.+...- ....+|..++.++..+.+.+...+...-+.++..+...+.... +++--.-++.++..++.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEk-DPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEK-DPRNLLLSFKLLKVILQ 153 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 22355666666654332 2346899999999999998777776666778888888877654 36655667888887776
Q ss_pred cCCCCcchhhhhhhHHHHHHHhc-------CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc
Q 000941 499 SHSPPVFHPYIKALSSPVLAAVG-------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1215)
Q Consensus 499 ~~~~~~~~~~l~~l~p~l~~~l~-------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 571 (1215)
... +.++.+.+...+..+.- +..++|..+-|.. .+-.++.. ...|. +-.+|.++++|.++
T Consensus 154 ~~~---~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~--~L~~cl~s-----~~~fa---~~~~p~LleKL~s~ 220 (262)
T PF14500_consen 154 EFD---ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR--ALRNCLSS-----TPLFA---PFAFPLLLEKLDST 220 (262)
T ss_pred hcc---cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH--HHHHHhcC-----cHhhH---HHHHHHHHHHHcCC
Confidence 653 35677777777766552 1223555555432 22222221 12343 45688889998743
Q ss_pred CCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHH
Q 000941 572 DQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLV 608 (1215)
Q Consensus 572 d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~ 608 (1215)
...+|.-++.++..++..+|. .+.++...+|..|.
T Consensus 221 --~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 221 --SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred --CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 567999999999999998875 45566666666553
No 114
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.38 E-value=0.039 Score=63.24 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
.+..++..+.+.|+.+|.-|...|.. ......++.+...+.|+++.||.+|+.++|.+-. +..++.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~-----------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---~~a~~~ 109 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGE-----------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGD---PEAVPP 109 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhh-----------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---hhHHHH
Confidence 45666677778888888888777421 2236788999999999999999999998886642 233334
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccC----------CChhHHHHHHHHHH
Q 000941 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----------MNTEIRCECLDILC 154 (1215)
Q Consensus 85 lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----------~~~~v~~~al~~L~ 154 (1215)
++..|-+ +.+..+|..+..+|..+-.. .-++.++..+++.. ....+|..+...++
T Consensus 110 li~~l~~---d~~~~vR~~aa~aL~~~~~~------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 110 LVELLEN---DENEGVRAAAARALGKLGDE------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHc---CCcHhHHHHHHHHHHhcCch------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 4443332 56677888888888765421 11334444444421 01134555555444
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l 234 (1215)
.+ ..+...+.+...+.++...||..|..+++.+.... ..+.+.+...+.++++ .+|..++.++
T Consensus 175 ~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~--~vr~~~~~~l 237 (335)
T COG1413 175 EL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL--EVRKAALLAL 237 (335)
T ss_pred Hc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH--HHHHHHHHHh
Confidence 33 22344555666677777788888888888877653 2234455555555554 5666666666
Q ss_pred HHH
Q 000941 235 GAL 237 (1215)
Q Consensus 235 ~~l 237 (1215)
|.+
T Consensus 238 ~~~ 240 (335)
T COG1413 238 GEI 240 (335)
T ss_pred ccc
Confidence 554
No 115
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.084 Score=64.23 Aligned_cols=346 Identities=16% Similarity=0.204 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHhhcCCCC
Q 000941 148 ECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAK 223 (1215)
Q Consensus 148 ~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~ll~~l~~~~~~ 223 (1215)
..++.++.+..-.|..+.+..-..+-.++..+.++++.++.-|..|+-.++..++- .++..-.++++..+...-.+
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 35566777777778877666555555556667788889999999999888876643 34555555555554321110
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHH-HHHHHHHHHHHHhCh----h-hhcccH-HHH
Q 000941 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELR-EYSLQALESFLLRCP----R-DISSYC-DEI 296 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elr-e~al~~l~~l~~~~~----~-~~~~~l-~~i 296 (1215)
.......-..+..+++..+....||+++++..+...+.. .-.-+ +.-++.+.++.+... . .+..++ +..
T Consensus 647 ~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~----yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~ 722 (1014)
T KOG4524|consen 647 SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY----YHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQH 722 (1014)
T ss_pred CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH----hcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 111223345667777777777788999988888876642 11111 111222233322211 1 111111 000
Q ss_pred HHHHHHHhccCCCCCC--------------------C------CCCCcccccccccchhhhcCCCCCCC-----------
Q 000941 297 LHLTLEYLSYDPNFTD--------------------N------MEEDSDDEAYEEEEEDESANEYTDDE----------- 339 (1215)
Q Consensus 297 i~~~l~~l~~dpn~~~--------------------~------~d~d~~~~~~~~~~d~~~~~~~~dd~----------- 339 (1215)
....-+.+.--|..-+ + ...|++++++.+.+++++.+++-|-+
T Consensus 723 ~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~ 802 (1014)
T KOG4524|consen 723 ISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVL 802 (1014)
T ss_pred HHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHH
Confidence 1111110000010000 0 00000000000000001111121110
Q ss_pred -----------CccHHHHHHHHHHHH---HHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccC
Q 000941 340 -----------DASWKVRRAAAKCLA---ALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVT 405 (1215)
Q Consensus 340 -----------d~swkvR~~Aa~~L~---~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~ 405 (1215)
+.+-.+|-.|..++. .++.++++.+-+..+...|.++.+++..++-+-.-+++|+..+..+.|..
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF- 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF- 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH-
Confidence 012345666666665 35677888888889999999999999999988888999988888876521
Q ss_pred CCcCCCCCCChhhHHHHHHHHHHHHHHHHh-cccCh--hhHHHHHHHHHHHHHhCch-----hh-hhhhhhhhHHHHHhh
Q 000941 406 KGQIDNNELNPRWLLKQEVSKIVKSINRQL-REKSI--KTKVGAFSVLRELVVVLPD-----CL-ADHIGSLIPGIEKSL 476 (1215)
Q Consensus 406 ~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L-~~~~~--~~r~~~~~~l~~L~~~~~~-----~l-~~~~~~lv~~l~~~l 476 (1215)
-....+++.+|.+=..+.... +.... ..+.+.+.+=...+..+++ .+ ..+++.+..+..-.+
T Consensus 882 ---------v~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l 952 (1014)
T KOG4524|consen 882 ---------VASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYL 952 (1014)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhH
Confidence 001134555566554444443 11111 2222333332233333322 11 124555555544444
Q ss_pred cCCCCcchhHHHHHHHHHHHhccCCCCcchhh
Q 000941 477 NDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY 508 (1215)
Q Consensus 477 ~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 508 (1215)
.... ...+...|.+++..++...+|..+.++
T Consensus 953 ~~~~-~q~Lqe~~~s~F~~~V~~ekp~~i~~~ 983 (1014)
T KOG4524|consen 953 SLIQ-PQVLQEIARSCFLDLVPVEKPQRISSM 983 (1014)
T ss_pred HhcC-hHHHHHHHHHHHHHHhccCCCcccchh
Confidence 4332 133555677777777776665555543
No 116
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.35 Score=57.72 Aligned_cols=121 Identities=26% Similarity=0.314 Sum_probs=74.0
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCCcchHHHH
Q 000941 888 ILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALK 967 (1215)
Q Consensus 888 il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l~ 967 (1215)
|...+...+..++.-++.|-|+|..+- +....-+|+..|-+ |+.+ ...|+.|+-+++
T Consensus 416 Ii~iie~~pdsKe~~L~~LCefIEDce------~~~i~~rILhlLG~------EgP~-----------a~~Pskyir~iy 472 (865)
T KOG1078|consen 416 IIDIIEENPDSKERGLEHLCEFIEDCE------FTQIAVRILHLLGK------EGPK-----------APNPSKYIRFIY 472 (865)
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHhcc------chHHHHHHHHHHhc------cCCC-----------CCCcchhhHHHh
Confidence 344444455667777778888877651 21222344333332 1111 235778888888
Q ss_pred HhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHH-HhccCCChHHHHHHHHHHHHHHhcCccc
Q 000941 968 VRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFL-MLIKDQDRHVRRAAVLALSTFAHNKPNL 1036 (1215)
Q Consensus 968 ~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l-~~l~D~d~~Vr~~a~~~L~~~~~~~p~~ 1036 (1215)
.+.--.+.-+|+.+++++--+... ++.+.+-+..++ .++.|.|.+||-.|...|..+-...+.+
T Consensus 473 NRviLEn~ivRaaAv~alaKfg~~-----~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l 537 (865)
T KOG1078|consen 473 NRVILENAIVRAAAVSALAKFGAQ-----DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVL 537 (865)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcC-----CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhh
Confidence 887777888998888888655522 223334444444 4788999999988888888766444443
No 117
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.33 E-value=0.15 Score=55.04 Aligned_cols=240 Identities=20% Similarity=0.273 Sum_probs=153.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh-hh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHh
Q 000941 142 NTEIRCECLDILCDVLHKFGNL-MS-NDHERLLSALLPQLSANQASVRKKSVSCIASLAS--SLSDDLLAKATIEVVRNL 217 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~-l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~--~~~~~~~~~l~~~ll~~l 217 (1215)
++.+|..|+..|++++.+.... +. .+...+.+.+...+.| ...++.. +.++..+.. ..+......++..+.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 6889999999999999999865 44 4677888888888864 3334433 677766663 334555666666666544
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHH
Q 000941 218 RSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1215)
Q Consensus 218 ~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1215)
.-+......|..+++.+..+.......+...=+..+..+++.+.. +-|+.---.++..+..+....+ +.++.++++
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lF 165 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD--ISEFAEDLF 165 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc--cchhHHHHH
Confidence 433333357888899999988876555544445667777777763 5677644556666666666665 488889998
Q ss_pred HHHHHHh--ccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHH
Q 000941 298 HLTLEYL--SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1215)
Q Consensus 298 ~~~l~~l--~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~L 375 (1215)
+.+..|. .|.|.-++. | .. -|+--...|...+.+.|. +-+..+|.|
T Consensus 166 d~~~cYFPI~F~pp~~dp---------------------~----~I---T~edLk~~L~~cl~s~~~----fa~~~~p~L 213 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPNDP---------------------Y----GI---TREDLKRALRNCLSSTPL----FAPFAFPLL 213 (262)
T ss_pred HHhhheeeeeeeCCCCCC---------------------C----CC---CHHHHHHHHHHHhcCcHh----hHHHHHHHH
Confidence 8876652 333321100 0 00 011222233333433332 334577888
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHH
Q 000941 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1215)
Q Consensus 376 i~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~ 433 (1215)
++.+......|+.++++++...+..-+ + ..+.+++.+|-.++..
T Consensus 214 leKL~s~~~~~K~D~L~tL~~c~~~y~-------------~-~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 214 LEKLDSTSPSVKLDSLQTLKACIENYG-------------A-DSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHCC-------------H-HHHHHHHHHHHHHHHH
Confidence 888887788899999999999887653 2 2567777777766644
No 118
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.32 E-value=0.073 Score=62.70 Aligned_cols=298 Identities=16% Similarity=0.146 Sum_probs=151.8
Q ss_pred cchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCC
Q 000941 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK 97 (1215)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~ 97 (1215)
+....+|..-+-++. +.-++..+..++.++.+.+|.+..||.+|++-|..+.+. .++.+..+++.|.+.+..++
T Consensus 36 ~k~K~Laaq~I~kff-----k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFF-----KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp HHHHHHHHHHHHHHH-----CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHH-----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhccc
Confidence 344445555554443 334677889999999999999999999999999888764 34688999999999998877
Q ss_pred cchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhc-cCCChhHHHHHHHHHHHHHHHhhhhhhh---h-HHHHH
Q 000941 98 DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL-KDMNTEIRCECLDILCDVLHKFGNLMSN---D-HERLL 172 (1215)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~-~~~~~~v~~~al~~L~~l~~~~g~~l~~---~-~~~ll 172 (1215)
+...++...+|.+++..-|. ..+..++..+.. .+.+..+|+.++..|.+=+...+..+.. + ..-+.
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 77788888888877753222 112222222220 1125678999888776666555544322 2 22333
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHHHHHhh----
Q 000941 173 SALLPQLSANQASVRKKSVSCIASLAS---SLSDDLLAKATIEVVRNLR-----SKGAKPEMIRTNIQMVGALSRA---- 240 (1215)
Q Consensus 173 ~~ll~~l~~~~~~vrk~a~~~l~~l~~---~~~~~~~~~l~~~ll~~l~-----~~~~~~~~~~~~i~~l~~l~~~---- 240 (1215)
..+-..|.+=...==+--+..|..+-- .-+..-...+++.+.+... ++. +.+.....++|+..-.-.
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~s-D~e~Idrli~C~~~Alp~fs~~ 259 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPS-DPESIDRLISCLRQALPFFSRG 259 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SS-SHHHHHHHHHHHHHHGGG-BTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCc-CHHHHHHHHHHHHHhhHHhcCC
Confidence 444444544222111223334443333 2233345566666665442 122 233444444444331111
Q ss_pred -hhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh-hhcccHHHHHHHHHHHhccCCCCCCCCCCC
Q 000941 241 -VGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYLSYDPNFTDNMEED 317 (1215)
Q Consensus 241 -~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d 317 (1215)
.+.+|..|+ ..|+| .+. +-+++.+-..+.++..++.+|+. +...+++.+++.++.|| |.-.
T Consensus 260 v~Sskfv~y~~~kvlP----~l~---~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym---P~~~------ 323 (556)
T PF05918_consen 260 VSSSKFVNYMCEKVLP----KLS---DLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM---PSKK------ 323 (556)
T ss_dssp B--HHHHHHHHHHTCC----CTT--------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-------------
T ss_pred CChHHHHHHHHHHhcC----Chh---hCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC---CCCC------
Confidence 112333332 33344 222 22345555577788888777763 45667777777776665 3100
Q ss_pred cccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHH
Q 000941 318 SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
.+.+..+..=+|...++..+....|+.+..
T Consensus 324 -------------------~~~~l~fs~vEcLL~afh~La~k~p~~~~~ 353 (556)
T PF05918_consen 324 -------------------TEPKLQFSYVECLLYAFHQLARKSPNSLNF 353 (556)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred -------------------CCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence 001223455667777888888777765443
No 119
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.30 E-value=0.11 Score=58.20 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhhhhhhh--HHHHHH-HHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 000941 148 ECLDILCDVLHKFGNLMSND--HERLLS-ALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1215)
Q Consensus 148 ~al~~L~~l~~~~g~~l~~~--~~~ll~-~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~ 224 (1215)
.++.+...++++....+.+. ...+++ .+.+.+.++++.||+.|+.|+|.++-.- .+.-.+.++.+...++.. ..
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~~~l~l~~~~~~~~--~~ 78 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAKEHLPLFLQALQKD--DE 78 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhC--CH
Confidence 35677778888877656543 335554 4559999999999999999999888654 444455566677777443 35
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcc-ch--------hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHH
Q 000941 225 EMIRTNIQMVGALSRAVGYRFGP-HL--------GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDE 295 (1215)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~-~l--------~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ 295 (1215)
+++..+++++..+...-|..+.+ .- ..+...+.+.+. .++++++..+.+++..+...-. +.+ .+.
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~~--i~~-~~~ 152 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSGR--ISD-PPK 152 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcCC--CCc-HHH
Confidence 78889999999988877643332 22 357778888877 4578899888888877654321 111 355
Q ss_pred HHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHH
Q 000941 296 ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1215)
Q Consensus 296 ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~L 375 (1215)
++..++-.. |+|.-.+ .-++|++=...+.......++.-..+-+.++|.+
T Consensus 153 vL~~Lll~y-F~p~t~~-----------------------------~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l 202 (298)
T PF12719_consen 153 VLSRLLLLY-FNPSTED-----------------------------NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTL 202 (298)
T ss_pred HHHHHHHHH-cCcccCC-----------------------------cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 565543332 5664211 0277888777777766666644444444455554
Q ss_pred H
Q 000941 376 I 376 (1215)
Q Consensus 376 i 376 (1215)
-
T Consensus 203 ~ 203 (298)
T PF12719_consen 203 R 203 (298)
T ss_pred H
Confidence 3
No 120
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.26 E-value=0.19 Score=57.37 Aligned_cols=239 Identities=15% Similarity=0.240 Sum_probs=128.5
Q ss_pred hhhhhccchhhhHHHHHHhhcccC-----CCcH------HHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhcc-CC
Q 000941 241 VGYRFGPHLGDTVPVLIDYCTSAS-----ENDE------ELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY-DP 308 (1215)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~-----~~d~------elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~-dp 308 (1215)
.|..|..++...|..+...+.... ++++ .++......+..+..++.+++.+|+++.+..+.+.+.- .+
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~ 151 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQ 151 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--S
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355566666666776665554321 1221 25556667777778888889999999999998887741 10
Q ss_pred CCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC--------chhhHHHHHH-HHHHHH---
Q 000941 309 NFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR--------PEMLSKLYEE-ACPKLI--- 376 (1215)
Q Consensus 309 n~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~--------~~~l~~~~~~-i~p~Li--- 376 (1215)
.+ .| | .+=..|..-|.++..+. ++.+..+.+. ++|.+-
T Consensus 152 ~~-----------------------~~----D---~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e 201 (370)
T PF08506_consen 152 QP-----------------------KY----D---ILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLRE 201 (370)
T ss_dssp SG-----------------------GG----H---HHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--H
T ss_pred cc-----------------------cc----c---HHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCH
Confidence 00 00 0 22234455555554331 1234444443 355541
Q ss_pred ---hhh-cccc------------hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhc----
Q 000941 377 ---DRF-KERE------------ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLR---- 436 (1215)
Q Consensus 377 ---~~~-~d~e------------~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~---- 436 (1215)
+.| .|++ ...|.++...+..+++.-+ +.+.+.+. ..+...+.
T Consensus 202 ~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~---------------~~v~~i~~---~~i~~~l~~y~~ 263 (370)
T PF08506_consen 202 EDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE---------------KQVTSILM---QYIQQLLQQYAS 263 (370)
T ss_dssp HHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH---------------HHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh---------------HHHHHHHH---HHHHHHHHHHhh
Confidence 122 1222 3445556666666655321 11222222 33333333
Q ss_pred --ccChhhHHHHHHHHHHHHHhCch---h---------hhhh-hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000941 437 --EKSIKTKVGAFSVLRELVVVLPD---C---------LADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 437 --~~~~~~r~~~~~~l~~L~~~~~~---~---------l~~~-~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
..+|+.+.+|+.+++.++..... + +.++ ...++|.+. .+.+..+-++..|+.++..+-...+
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~l~ 340 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQLP 340 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhhCC
Confidence 34678899999999999875421 1 2222 223345544 1333345688999999888754321
Q ss_pred CCcchhhhhhhHHHHHHHhcCCchHHHHHHHHH
Q 000941 502 PPVFHPYIKALSSPVLAAVGERYYKVTAEALRV 534 (1215)
Q Consensus 502 ~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~ 534 (1215)
.+.+..++|.+...++++.+-|...|..+
T Consensus 341 ----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 341 ----KEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp ----HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 24788999999999999877666665443
No 121
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.82 Score=54.65 Aligned_cols=399 Identities=17% Similarity=0.215 Sum_probs=208.8
Q ss_pred HHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccc
Q 000941 170 RLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1215)
Q Consensus 170 ~ll~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~ 248 (1215)
+.++.+..-..+.. ..-|+.|+.+|-.++.-+....-..=|+++++.|+..-.+++....++.++-.+..+..
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd------ 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD------ 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc------
Confidence 33444444444433 36789999999999987766666667888999988765555666666665555544321
Q ss_pred hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccch
Q 000941 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1215)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d 328 (1215)
-+.++ ++....-+..++.-+.|+.. +..+..++.++..+
T Consensus 96 ~~~v~-----------dds~qsdd~g~~iae~fik~---------qd~I~lll~~~e~~--------------------- 134 (970)
T KOG0946|consen 96 SPEVM-----------DDSTQSDDLGLWIAEQFIKN---------QDNITLLLQSLEEF--------------------- 134 (970)
T ss_pred chhhc-----------ccchhhhHHHHHHHHHHHcC---------chhHHHHHHHHHhh---------------------
Confidence 00000 11112223345554555443 34566677776310
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHH---HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccC
Q 000941 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL---YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVT 405 (1215)
Q Consensus 329 ~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~---~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~ 405 (1215)
.+.||+.|++++.+++.++|..+.+. ++.-+..|+.-++|..|-+|.+++-.+.++++.-+
T Consensus 135 -------------DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~--- 198 (970)
T KOG0946|consen 135 -------------DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS--- 198 (970)
T ss_pred -------------chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc---
Confidence 04899999999999999999666542 23344556667789999999999999989887432
Q ss_pred CCcCCCCCCChhhHHHHH--HHHHHHHHHHHhcccC----hhhHHHHHHHHHHHHHhCch---hhh--hhhhhhh---HH
Q 000941 406 KGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKS----IKTKVGAFSVLRELVVVLPD---CLA--DHIGSLI---PG 471 (1215)
Q Consensus 406 ~~~~~~~~~~~~~~L~~~--~p~i~~~l~~~L~~~~----~~~r~~~~~~l~~L~~~~~~---~l~--~~~~~lv---~~ 471 (1215)
.++.. +..++..++..+.... --+...|+.++..|....-. -|. .|++.+. |.
T Consensus 199 -------------~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 199 -------------SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 22221 2444455555544321 23778899999888765422 122 2555544 22
Q ss_pred HHHhhcC-CCCc-chhH----HHHHHHHHHHhccCCCCcc-h---h--hhhhhHHHHHHHhcC--CchHHHHHHHHHHHH
Q 000941 472 IEKSLND-KSST-SNLK----IEALTFTRLVLSSHSPPVF-H---P--YIKALSSPVLAAVGE--RYYKVTAEALRVCGE 537 (1215)
Q Consensus 472 l~~~l~d-~~~~-~~~~----~~al~~l~~l~~~~~~~~~-~---~--~l~~l~p~l~~~l~d--~~~~v~~~al~~l~~ 537 (1215)
.. +.| .... +.-| ..+|..++.++.-..+... + . .-..++..++..+-. -..+|..+++-++.+
T Consensus 266 f~--~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAe 343 (970)
T KOG0946|consen 266 FE--FGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAE 343 (970)
T ss_pred cc--ccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHH
Confidence 22 122 1100 1123 3556666666532111111 0 0 112344444444432 345788888888888
Q ss_pred HHHhccCCCcC----CCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhcc
Q 000941 538 LVRVLRPSVEG----LGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN 613 (1215)
Q Consensus 538 l~~~~~~~~~~----~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~ 613 (1215)
+++.-...... ....+.+-...++-.++. +.+.......|.+..+|+-.+...-.+.=..++..++|.-...-+|
T Consensus 344 vVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllms-m~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~N 422 (970)
T KOG0946|consen 344 VVRGNARNQDEFADVTAPSIPNPRPSIVVLLMS-MFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSN 422 (970)
T ss_pred HHHhchHHHHHHhhccCCCCCCCccchhHHHHH-HHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhcccccc
Confidence 77542211100 011122112223322222 2334445788999999987765432222122455555544333222
Q ss_pred chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh
Q 000941 614 EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA 654 (1215)
Q Consensus 614 e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~ 654 (1215)
. .....+.-...+. ...+..|+..++ |.-++..+
T Consensus 423 s----l~ag~l~~~~l~s-~d~~~nwFt~v~--lmh~l~dn 456 (970)
T KOG0946|consen 423 S----LSAGQLLLVGLSS-TDSLDNWFTAVI--LMHLLQDN 456 (970)
T ss_pred c----hhhhhHHHHhhcc-chHHHHHHHHHH--HHHHHHHh
Confidence 1 1122222222222 345677776553 44444433
No 122
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.23 E-value=0.015 Score=67.05 Aligned_cols=152 Identities=16% Similarity=0.078 Sum_probs=98.0
Q ss_pred HHHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 5 QMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 5 ~l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
.+..++..+ .+.|+.+|+.|..-|. . .+. ...+..|+..|.|+++.||..+++.||.+ +. .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~---~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~---~ 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---A-----QED---ALDLRSVLAVLQAGPEGLCAGIQAALGWL----GG---R 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---c-----cCC---hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc---h
Confidence 345566666 4677788877664441 1 011 12488899999999999999999999854 33 2
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
...+.|...+.++++.+|..+.-++...-. .-.+.+...+++. ++.|+..++.+|+.+-.
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-------------~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-------------DPGPALEAALTHE--DALVRAAALRALGELPR----- 176 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-------------ChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-----
Confidence 344555566666666677655544332111 1123555556654 68999999999987621
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1215)
...++.+...+.+.++.||..|+.+++.++.
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 2233334566889999999999999977753
No 123
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.21 E-value=0.094 Score=70.54 Aligned_cols=266 Identities=11% Similarity=0.147 Sum_probs=164.3
Q ss_pred HHHHHHHHHhc-ccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCc
Q 000941 426 KIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV 504 (1215)
Q Consensus 426 ~i~~~l~~~L~-~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~ 504 (1215)
.+++.+...+. ..+..+|...+..+.+++....+.+..-...++..+..+..+++ ..+..-|+..+..++..+-+..
T Consensus 1182 efLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~--e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1182 EFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH--KNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHhhhhhc
Confidence 44455555443 34557899999999999988777777778888887777776654 4555567777777766543211
Q ss_pred c---hhhhhhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCC--C-----c-------------C---CCCCC--hh
Q 000941 505 F---HPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPS--V-----E-------------G---LGFDF--KP 555 (1215)
Q Consensus 505 ~---~~~l~~l~p~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~--~-----~-------------~---~~~~~--~~ 555 (1215)
. ...+..++.++....+.. +.++.-.|+..+..+...+... . . . ....+ ..
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 1 134556666666555433 3567777777666443322100 0 0 0 00000 01
Q ss_pred cHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHHhccCcccc-h-----hhhhHHHHHHhhc---------------
Q 000941 556 YVQPIYNAIMSRLT--NQDQDQEVKECAISCMGLVISTFGDNLGA-E-----LPACLPVLVDRMG--------------- 612 (1215)
Q Consensus 556 ~l~~l~~~l~~~l~--~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~-~-----~~~~l~~L~~~L~--------------- 612 (1215)
....+|-.++..+. ..|.+.+||..|+..+=.++...|..+.+ . -..++|++-. ++
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~-l~~~~~~~~~~~~~~~~ 1418 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDY-VRHAIDPSGGDEPEGQG 1418 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH-HHHhhcccccccccccc
Confidence 11123333333331 23678999999999999999888988876 2 2344555422 11
Q ss_pred ----cc---------hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCc
Q 000941 613 ----NE---------ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGA 679 (1215)
Q Consensus 613 ----~e---------~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~ 679 (1215)
++ +|..-|++.+..+...=. ..+.+.++.++..|..++.++|..+-..+..||..++...+..|.+
T Consensus 1419 ~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1419 VDGDQGELDQDAWLYETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 01 122233444444432111 1245677888888888889999999999999999999999999998
Q ss_pred chHHHHHHHhhhhcCC
Q 000941 680 SAYEVIIVELSTLISD 695 (1215)
Q Consensus 680 ~~~~~~l~~l~~~l~~ 695 (1215)
+....++..+..+...
T Consensus 1498 ~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1498 EKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877666543
No 124
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.20 E-value=0.23 Score=56.67 Aligned_cols=209 Identities=15% Similarity=0.231 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHhhhhhh--h--ccchhhhHH
Q 000941 185 SVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGA---KPEMIRTNIQMVGALSRAVGYR--F--GPHLGDTVP 254 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~~---~~~~~~~~i~~l~~l~~~~~~~--~--~~~l~~iip 254 (1215)
.+|+.++..+...+.-..+. +++.++..+.+.|.+-.. .+.....+++.++++++....+ | .|++..|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 57888888888887765444 244555555555543211 1244556788888888765432 3 457777765
Q ss_pred HH-HHhhcccC--------------------CCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCC
Q 000941 255 VL-IDYCTSAS--------------------ENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDN 313 (1215)
Q Consensus 255 ~l-l~~~~~~~--------------------~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~ 313 (1215)
.+ +..+.-.+ .|.+--|.+|...+..+++..++.+.+.+...+..++.-..-+|
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~----- 265 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNP----- 265 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCC-----
Confidence 33 22222110 11122567788888888888776665555544444433211122
Q ss_pred CCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-----c-----h--hhHHHH-HHHHHHHHhhhc
Q 000941 314 MEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-----P-----E--MLSKLY-EEACPKLIDRFK 380 (1215)
Q Consensus 314 ~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-----~-----~--~l~~~~-~~i~p~Li~~~~ 380 (1215)
...|+-+.+|..+++++.... | + -+.++| +.++|-|. .-.
T Consensus 266 --------------------------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~ 318 (370)
T PF08506_consen 266 --------------------------SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV 318 (370)
T ss_dssp --------------------------TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS
T ss_pred --------------------------cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC
Confidence 124998999999999987543 1 1 134444 44567664 212
Q ss_pred ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhH
Q 000941 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTK 443 (1215)
Q Consensus 381 d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r 443 (1215)
...+-+|.++++.+...-.+. | .+++..+++.+.+.|.+++..++
T Consensus 319 ~~~piLka~aik~~~~Fr~~l--------------~----~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQL--------------P----KEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-------------------HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred CCCcchHHHHHHHHHHHHhhC--------------C----HHHHHHHHHHHHHHhCCCCcchh
Confidence 345778888888877765443 2 35667788888888888776555
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.20 E-value=0.17 Score=59.72 Aligned_cols=294 Identities=17% Similarity=0.223 Sum_probs=156.2
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHH
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 421 (1215)
+.++.+-|+..+......+|++-.. .+..++....|.+..||..+++.+..+++.. .
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-------------------~ 91 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-------------------P 91 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------------------
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-------------------H
Confidence 4588999999999999999876554 4455556668999999999999988887643 3
Q ss_pred HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch-hhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD-CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 422 ~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~-~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
++++.+..+|.+.|...++.....+=..|.++....|. .|...+.++.+. +..+..+|..++.|+..-+...
T Consensus 92 ~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-------~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 92 EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-------KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-------ccCchHHHHHHHHHHHHHHhhC
Confidence 46788999999999877766665555666666554332 233333333321 1233568999999999888877
Q ss_pred CCCcchh--hhh-hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc----cCC
Q 000941 501 SPPVFHP--YIK-ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN----QDQ 573 (1215)
Q Consensus 501 ~~~~~~~--~l~-~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~----~d~ 573 (1215)
+++.+.| -++ -++..+.+.++| |..+=+..+.++++.+.--. ...-.+..+.|++.+.+...- .-.
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~D----VTaeEF~l~m~lL~~lk~~~---~~~t~~g~qeLv~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQD----VTAEEFELFMSLLKSLKIYG---GKQTIEGRQELVDIIEEQADLDQPFDPS 237 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHTSGG------GSSHHHHHHHHHHHHHHHTTTS---SS
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhCcccc---ccCChHHHHHHHHHHHHHhccCCCCCCc
Confidence 7777773 233 344455555555 33444555556665543200 012234567788877765421 112
Q ss_pred CHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHh----hc--cchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 000941 574 DQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDR----MG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647 (1215)
Q Consensus 574 ~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~----L~--~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L 647 (1215)
|.+.-.+-+.|+-.-+--+.... .-..++..+++. ++ .+..+..-++++.+++......+....++.+...|
T Consensus 238 D~e~Idrli~C~~~Alp~fs~~v--~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L 315 (556)
T PF05918_consen 238 DPESIDRLISCLRQALPFFSRGV--SSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLL 315 (556)
T ss_dssp SHHHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhHHhcCCC--ChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Confidence 45555666777665333222211 122333333332 11 34567778888888884332233445555555555
Q ss_pred HHHHH--HhhhHHHHHHHHHHHHHHHHhC
Q 000941 648 TAFLR--KANRALRQATLGTMNSLVVAYG 674 (1215)
Q Consensus 648 ~~~L~--~~~~~lr~~al~~L~~l~~~~~ 674 (1215)
..++- +....+...-++|+-...+..+
T Consensus 316 ~~ymP~~~~~~~l~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 316 KKYMPSKKTEPKLQFSYVECLLYAFHQLA 344 (556)
T ss_dssp HTTS----------HHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCcccchHhhHHHHHHHHHh
Confidence 44432 2345566666777666555443
No 126
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.56 Score=55.99 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1215)
+...+.|++||..+.+. -.+.|.-|+.|||.+-.. +...+--.=++.+++.|+..-.+++.-..++|++..+..
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 34567788888877654 345688899999987643 333333334566777776543367888888888877665
Q ss_pred Hh---------------hhhhhhh---HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH------HHHHHHHHH
Q 000941 159 KF---------------GNLMSND---HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL------LAKATIEVV 214 (1215)
Q Consensus 159 ~~---------------g~~l~~~---~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~------~~~l~~~ll 214 (1215)
+- |..+... .+..+..++..+..-+-.||..|++.+.++..+.|.+. ++.=+..++
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 53 2222211 24556777777777777899999999999999998874 233455666
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhhhh--hhccchhhhHHHHHHhhcccC-CCcHHHHHHHHHHHHHHHHhCh
Q 000941 215 RNLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSAS-ENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 215 ~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--~~~~~l~~iip~ll~~~~~~~-~~d~elre~al~~l~~l~~~~~ 286 (1215)
..|.+... .+|-.++-.+..+.+.++. ++.. +..+...+++.+.... -+..=+-+.|+..+..+.+..-
T Consensus 173 dlL~DsrE--~IRNe~iLlL~eL~k~n~~IQKlVA-FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 173 DLLRDSRE--PIRNEAILLLSELVKDNSSIQKLVA-FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHhhhhh--hhchhHHHHHHHHHccCchHHHHHH-HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 77766543 6788899999999998773 2221 2445566666665321 1122367889888888887653
No 127
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.14 E-value=1.2 Score=54.86 Aligned_cols=363 Identities=17% Similarity=0.188 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh--hhhccchhhhHHHHHHhhccc
Q 000941 189 KSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG--YRFGPHLGDTVPVLIDYCTSA 263 (1215)
Q Consensus 189 ~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~--~~~~~~l~~iip~ll~~~~~~ 263 (1215)
.++..|..++.-..... -..+++.++..|+..+. +....++.++..++-... ..+. -..++|.+.+.+..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~--ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s- 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE--ELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPS- 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcC-
Confidence 45566666665443321 23567777777766542 455555666665553221 2222 24578888888773
Q ss_pred CCCcHHHHHHHHHHHHHHHHhChhhhcccHH--HHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCc
Q 000941 264 SENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1215)
Q Consensus 264 ~~~d~elre~al~~l~~l~~~~~~~~~~~l~--~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~ 341 (1215)
+++++++.++..+-++... .+.++.+- .++|.+..+++ ||
T Consensus 343 --~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~-d~--------------------------------- 384 (708)
T PF05804_consen 343 --ENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLK-DP--------------------------------- 384 (708)
T ss_pred --CCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhC-CC---------------------------------
Confidence 5678888888888776421 12222221 13334444443 11
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHH
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 420 (1215)
+.|..+.++|..+.......-.--+..++|.+++.+ ..+++.+..+.+..+..+....+. ...+
T Consensus 385 --~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-------------aqlm 449 (708)
T PF05804_consen 385 --NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-------------AQLM 449 (708)
T ss_pred --chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-------------HHHH
Confidence 235566666666543221111112334667776654 445566655554443333322110 0001
Q ss_pred H--HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 421 K--QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 421 ~--~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
. +-++.+++.. ++.++ ...+.++..+..+- +.....+...+..+...+.... +.....+++..++.+--
T Consensus 450 ~~g~gL~~L~~ra---~~~~D----~lLlKlIRNiS~h~-~~~k~~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 450 CEGNGLQSLMKRA---LKTRD----PLLLKLIRNISQHD-GPLKELFVDFIGDLAKIVSSGD-SEEFVVECLGILANLTI 520 (708)
T ss_pred HhcCcHHHHHHHH---Hhccc----HHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccc
Confidence 0 1133333332 22222 12346777777654 3344444455555555565543 46788888888888743
Q ss_pred cCCCCcchhhhh--hhHHHHHHHhcCC--chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH--HHHHHHHHHhhccC
Q 000941 499 SHSPPVFHPYIK--ALSSPVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQD 572 (1215)
Q Consensus 499 ~~~~~~~~~~l~--~l~p~l~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~--~l~~~l~~~l~~~d 572 (1215)
. ...+...+. .++|.+...+... ...+.-+++-+++.++.. ....+.+. .+++.+++.+....
T Consensus 521 ~--~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---------~~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 521 P--DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---------PECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred C--CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---------HHHHHHHHhCChHHHHHHHHHhhC
Confidence 2 234555553 5788888877643 225777777777766531 12333333 56777777777777
Q ss_pred CCHHHHHHHHHHHHHHHHhccC--cccchhhhhHHHHHHhh--ccchhHHHHHHHHHHHHcC
Q 000941 573 QDQEVKECAISCMGLVISTFGD--NLGAELPACLPVLVDRM--GNEITRLTAVKAFAVIAAS 630 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~l~~~~~~--~l~~~~~~~l~~L~~~L--~~e~~r~~a~~al~~i~~s 630 (1215)
.|.|.--+.++++..++.|-.. .+-. -..+...+.+.+ +|...|..+=.+|+.|+..
T Consensus 590 eDdE~VlQil~~f~~ll~h~~tr~~ll~-~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHEETREVLLK-ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred chHHHHHHHHHHHHHHHcChHHHHHHHh-ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 7888888899999999877421 1101 123444555555 4557788888888887743
No 128
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.13 E-value=0.0067 Score=60.85 Aligned_cols=152 Identities=26% Similarity=0.289 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHh-ChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHH
Q 000941 270 LREYSLQALESFLLR-CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRA 348 (1215)
Q Consensus 270 lre~al~~l~~l~~~-~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~ 348 (1215)
+|-.++.+++.+++. -++.+-.|++.++|-. ... +.+.... -+ ..--.|.+-|||.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~-~~~~~~s------Ll-------------t~il~Dp~~kvR~a 59 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQ-GRPATPS------LL-------------TCILKDPSPKVRAA 59 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCc-CCCCCcc------hh-------------HHHHcCCchhHHHH
Confidence 688999999999999 6677888888877743 110 0000000 00 00012345699999
Q ss_pred HHHHHHHHHhhCchhh-------------HHHHHHHHH-------HHHhhh-cccchhHHHHHHHHHHHHHHHhcccCCC
Q 000941 349 AAKCLAALIVSRPEML-------------SKLYEEACP-------KLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKG 407 (1215)
Q Consensus 349 Aa~~L~~li~~~~~~l-------------~~~~~~i~p-------~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~~~~~~ 407 (1215)
|+.++.+++.+...++ .++-..+.. .|+..+ +|.+..+-..+++|+..++..+
T Consensus 60 A~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t------ 133 (182)
T PF13251_consen 60 AASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT------ 133 (182)
T ss_pred HHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC------
Confidence 9999999987642211 112111111 222233 5666777788899999988765
Q ss_pred cCCCCCCChhhHH-HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC
Q 000941 408 QIDNNELNPRWLL-KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1215)
Q Consensus 408 ~~~~~~~~~~~~L-~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~ 457 (1215)
|...+ .+.++.+++.+...+..++..++.+++.+++.+....
T Consensus 134 --------PY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 134 --------PYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred --------ChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 44444 4567899999999998888899999999999988654
No 129
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=1.1 Score=53.25 Aligned_cols=279 Identities=12% Similarity=0.107 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHhhCch--hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH
Q 000941 345 VRRAAAKCLAALIVSRPE--MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1215)
Q Consensus 345 vR~~Aa~~L~~li~~~~~--~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1215)
+|..|+..+..+-..+++ .+...|+.+... +++..-.|+.++.-++..++..... ...+.+
T Consensus 476 L~Srace~is~~eeDfkd~~ill~aye~t~nc----l~nn~lpv~ieAalAlq~fi~~~q~-------------h~k~sa 538 (970)
T COG5656 476 LKSRACEFISTIEEDFKDNGILLEAYENTHNC----LKNNHLPVMIEAALALQFFIFNEQS-------------HEKFSA 538 (970)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHHHHH----HhcCCcchhhhHHHHHHHHHhchhh-------------hHHHHh
Confidence 566677777776544543 334455554444 4556667888888888888775421 125688
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHH----h----hcCCCC----cchhHHHHH
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEK----S----LNDKSS----TSNLKIEAL 490 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~----~----l~d~~~----~~~~~~~al 490 (1215)
++|.+++.+...-++-+...- -.++..+++.++..++|+-++++..+.+ . +.++.. ..+-.+.|.
T Consensus 539 hVp~tmekLLsLSn~feiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaas 615 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPL---SMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAAS 615 (970)
T ss_pred hhhHHHHHHHHhcccccchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHH
Confidence 999999988887665443222 2456677777777777777766655554 2 222211 112234455
Q ss_pred HHHHHH---hcc--CCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHH
Q 000941 491 TFTRLV---LSS--HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 565 (1215)
Q Consensus 491 ~~l~~l---~~~--~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~ 565 (1215)
.+|+.+ +-+ ..|..++.....++|.+---+.+.-...-.||+..+....-..+ .+.|.+-.+++.+.
T Consensus 616 GiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk--------eI~pimwgi~Ell~ 687 (970)
T COG5656 616 GILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK--------EIEPIMWGIFELLL 687 (970)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH--------HhhhhhhHHHHHHH
Confidence 444443 322 22333333455666666655655555666788887776654332 34566777777777
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHhccCcccc---hhhhhHHHHHHhhccch----hHHHHHHHHHHHHcCCCCCchhH
Q 000941 566 SRLTNQDQDQEVKECAISCMGLVISTFGDNLGA---ELPACLPVLVDRMGNEI----TRLTAVKAFAVIAASPLHIDLTC 638 (1215)
Q Consensus 566 ~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~---~~~~~l~~L~~~L~~e~----~r~~a~~al~~i~~s~~~~~~~~ 638 (1215)
+.+...++ ..--+.+.-++..++...+..+.+ +...++.++...+.+|. .+..+++.+..++.+-...-+++
T Consensus 688 ~~l~~~~t-~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~q 766 (970)
T COG5656 688 NLLIDEIT-AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQ 766 (970)
T ss_pred hcccccch-hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHh
Confidence 76654433 244466677778887776655543 66677777778887765 35667777777764421112356
Q ss_pred HHHHHHHHHHHHHH
Q 000941 639 VLEHVIAELTAFLR 652 (1215)
Q Consensus 639 ~l~~~l~~L~~~L~ 652 (1215)
|++-.+......+.
T Consensus 767 y~plfi~vags~l~ 780 (970)
T COG5656 767 YLPLFISVAGSGLK 780 (970)
T ss_pred hhHHHHHHHhhhhh
Confidence 66644444443343
No 130
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.08 E-value=0.02 Score=61.37 Aligned_cols=192 Identities=13% Similarity=0.201 Sum_probs=124.4
Q ss_pred hHHHHHHHHHhc-CCCcchhhhhHHHHHHHhccccCCCChHHHH--HHHHHHHHhccCcccchhHHHHHHHHHHhhccCh
Q 000941 3 NLQMAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLEV--KLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1215)
Q Consensus 3 ~~~l~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~--~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~ 79 (1215)
+..+..++.-+. +.||-++.+|+.-+.+.-. +....+..+ ..++.+...|++|++.||..|..++..+......
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 466777777776 5689999999988876432 222233333 4788899999999999999999999998754333
Q ss_pred -hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHH
Q 000941 80 -PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 80 -~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1215)
..+..+++.+|..+.+...+ .++-..||+.+. ++....-...++...+|.+++.+..+ +..++..++.+|..+..
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~ln-s~~Q~agLrlL~-nLtv~~~~~~~l~~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLN-SEVQLAGLRLLT-NLTVTNDYHHMLANYIPDLLSLLSSG--SEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH-ccCCCcchhhhHHhhHHHHHHHHHcC--ChHHHHHHHHHHHHhcc
Confidence 35667888888877654211 122234455443 33221222334555678888777765 47899999999988866
Q ss_pred Hhh---hhhhhhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHH
Q 000941 159 KFG---NLMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 159 ~~g---~~l~~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
+-. +.+. ...+..++..++.+ +..+--+++..+..+.....+.
T Consensus 164 np~~~~~Ll~---~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 164 NPDMTRELLS---AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred CHHHHHHHHh---ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 532 2222 12355566666654 3467777888888876655443
No 131
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=1.1 Score=53.22 Aligned_cols=338 Identities=13% Similarity=0.174 Sum_probs=178.5
Q ss_pred hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhh
Q 000941 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRF 245 (1215)
Q Consensus 166 ~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~ 245 (1215)
++.-.+.+.+-..|++|+.-||...+.-++. .-..+++++++|.+.+.+.+.+. =+|+.|+-|+.+|-+. ...+
T Consensus 95 ~EMILvcna~RkDLQHPNEyiRG~TLRFLck---LkE~ELlepl~p~IracleHrhs--YVRrNAilaifsIyk~-~~~L 168 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQHPNEYIRGSTLRFLCK---LKEPELLEPLMPSIRACLEHRHS--YVRRNAILAIFSIYKN-FEHL 168 (948)
T ss_pred HHHHHHHHHHhhhccCchHhhcchhhhhhhh---cCcHHHhhhhHHHHHHHHhCcch--hhhhhhheeehhHHhh-hhhh
Confidence 3445556677788999999999876665544 44667899999999999988775 5899999999999886 3555
Q ss_pred ccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh-----------hhcccHHHHHHHHHHHhccCCCCCCCC
Q 000941 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-----------DISSYCDEILHLTLEYLSYDPNFTDNM 314 (1215)
Q Consensus 246 ~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-----------~~~~~l~~ii~~~l~~l~~dpn~~~~~ 314 (1215)
-|-.|.++...+.. +.|+--+..|+ -.+....|+ .+..|-+.+.-++.+++...-+-+
T Consensus 169 ~pDapeLi~~fL~~-----e~DpsCkRNAF---i~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~--- 237 (948)
T KOG1058|consen 169 IPDAPELIESFLLT-----EQDPSCKRNAF---LMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN--- 237 (948)
T ss_pred cCChHHHHHHHHHh-----ccCchhHHHHH---HHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC---
Confidence 66667776666543 23333222232 222222221 111111222222222221000000
Q ss_pred CCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC------------------chhhHHHHHHHHHHHH
Q 000941 315 EEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR------------------PEMLSKLYEEACPKLI 376 (1215)
Q Consensus 315 d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~------------------~~~l~~~~~~i~p~Li 376 (1215)
...|..=.+|+..++.+. |..+..--..++..++
T Consensus 238 ----------------------------p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ 289 (948)
T KOG1058|consen 238 ----------------------------PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLV 289 (948)
T ss_pred ----------------------------HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHH
Confidence 000111122232222221 1111111111111111
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHh
Q 000941 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 377 ~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~ 456 (1215)
+++.-+|+.-...-+.++-. .-...+..++--+.+.|..++..+|.-++++.-.|+.+
T Consensus 290 ---kesdnnvklIvldrl~~l~~-------------------~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 290 ---KESDNNVKLIVLDRLSELKA-------------------LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred ---hccCcchhhhhHHHHHHHhh-------------------hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 33333343332222222210 01223344455556677888888999999888888764
Q ss_pred CchhhhhhhhhhhHHHHHhhcCCCC-----cchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHH
Q 000941 457 LPDCLADHIGSLIPGIEKSLNDKSS-----TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEA 531 (1215)
Q Consensus 457 ~~~~l~~~~~~lv~~l~~~l~d~~~-----~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~a 531 (1215)
..+.+++..+.+-+.+.++ ....|..-+..+..+.. .|..+-..++|.++..++|.+..-+...
T Consensus 348 ------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav-----~Fp~~aatvV~~ll~fisD~N~~aas~v 416 (948)
T KOG1058|consen 348 ------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV-----KFPEVAATVVSLLLDFISDSNEAAASDV 416 (948)
T ss_pred ------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-----cChHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3456666666655543321 12345544444444432 4556788999999999999988777777
Q ss_pred HHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc
Q 000941 532 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1215)
Q Consensus 532 l~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~ 593 (1215)
+..+.+.++.+...+ ..++..+++.+. +-...++-+.|++-+|+.+...+
T Consensus 417 l~FvrE~iek~p~Lr-----------~~ii~~l~~~~~-~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 417 LMFVREAIEKFPNLR-----------ASIIEKLLETFP-QIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhCchHH-----------HHHHHHHHHhhh-hhcccccchhHHHHHHHHHhhhH
Confidence 777777766542211 122222222221 01135567888898998877653
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.03 E-value=0.00074 Score=53.60 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASL 197 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1215)
|.||..|+.+|+.+....++.+.++.+.+++.++..+.|+++.||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988889999999999999999999999999999999999864
No 133
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.02 E-value=0.00073 Score=46.05 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.5
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhc
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKK 76 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~ 76 (1215)
+++.++++++||+++||..|++||+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
No 134
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.97 E-value=0.26 Score=56.76 Aligned_cols=262 Identities=17% Similarity=0.192 Sum_probs=158.4
Q ss_pred hcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHH----Hhcc------Cc-ccchhHHHHHHHHHHh------h
Q 000941 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVV----QQLD------DV-AGDVSGLAVKCLAPLV------K 75 (1215)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll----~~L~------D~-~~~Vq~~A~~~l~~l~------~ 75 (1215)
+.+.|.+-|.=|-..|.+.++......+.....+-++.++ +-+. || +.++-.+|.|++|-+. .
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3456667777666667676665433334433333333333 3332 33 5678899999999665 4
Q ss_pred ccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH-hccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 76 KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII-AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 76 ~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i-~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
.++.+....+++..+..+.+++.. ..++..+|-.+- .+++..-+.......++. .+..+.+.-+...+..+.+.++-
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHH
Confidence 677777777888888888665432 344555454332 244431111111222222 22334431225678899999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHH------------------HHHHHHH
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAK------------------ATIEVVR 215 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~------------------l~~~ll~ 215 (1215)
.++..++..|..+...=++.++..+-+....+|.+|+.++..+...++.+ .+.. +.+.+..
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKE 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 99999999988776666667777766666788888888877776666543 1111 1111222
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhhhhh---hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 216 NLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~---~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
.+.+.+ ....+.+.|+.+..-.+. .-.+|+...+...-.+++ ..|+.+|..|+.++..++-
T Consensus 240 mi~~~~----~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn---~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 240 MIKSKD----EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN---SSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHhCcC----CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 222211 123567788777766653 334577777777777776 4688999999999887765
No 135
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.5 Score=52.70 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=158.2
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHH
Q 000941 373 PKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRE 452 (1215)
Q Consensus 373 p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~ 452 (1215)
|.+-+.++...++|-.++..+...+-... ...+.+-+..+.-.+..+....|-+|..+|..
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~-------------------~r~l~pavs~Lq~flssp~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN-------------------SRELAPAVSVLQLFLSSPKVALRFAAVRTLNK 308 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC-------------------HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33333346677888888776655542211 12233367777778888888899999999999
Q ss_pred HHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHH---hcCCchHHHH
Q 000941 453 LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAA---VGERYYKVTA 529 (1215)
Q Consensus 453 L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~---l~d~~~~v~~ 529 (1215)
++..+|....-.-.++- ..+.|.+ ..+ +.-.+..++++... ..+..++..+... +.|.+-.+..
T Consensus 309 vAm~~P~~v~~cN~elE----~lItd~N----rsI-at~AITtLLKTG~e----~sv~rLm~qI~~fv~disDeFKivvv 375 (865)
T KOG1078|consen 309 VAMKHPQAVTVCNLDLE----SLITDSN----RSI-ATLAITTLLKTGTE----SSVDRLMKQISSFVSDISDEFKIVVV 375 (865)
T ss_pred HHHhCCccccccchhHH----hhhcccc----cch-hHHHHHHHHHhcch----hHHHHHHHHHHHHHHhccccceEEeH
Confidence 99988875433222221 2223332 122 22334455555322 2344454444444 4455555656
Q ss_pred HHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHH
Q 000941 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 609 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~ 609 (1215)
.|+..+.... ...-..+++++...|+. +...+-+...+.++-.+++...+ .-...+..|++
T Consensus 376 dai~sLc~~f--------------p~k~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pd----sKe~~L~~LCe 436 (865)
T KOG1078|consen 376 DAIRSLCLKF--------------PRKHTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPD----SKERGLEHLCE 436 (865)
T ss_pred HHHHHHHhhc--------------cHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcc----hhhHHHHHHHH
Confidence 6655543322 11112234444444443 44566677777777776664322 22334555555
Q ss_pred hhccchhHHHHHHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 000941 610 RMGNEITRLTAVKAFAVIA-ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVE 688 (1215)
Q Consensus 610 ~L~~e~~r~~a~~al~~i~-~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 688 (1215)
.+.+-..+.-+.+.+..+. ..|....-+.|+..+...+ --.+..+|.+++.|+..+..... ...+.+...
T Consensus 437 fIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv----iLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vl 507 (865)
T KOG1078|consen 437 FIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV----ILENAIVRAAAVSALAKFGAQDV-----VLLPSILVL 507 (865)
T ss_pred HHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh----hhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHH
Confidence 5544444556667777665 2222222255666554432 23567799999999999872221 123446666
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHhh
Q 000941 689 LSTLISDSDLHMTALALELCCTLMA 713 (1215)
Q Consensus 689 l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1215)
+...+.+.|-.+|..|-..+..+-.
T Consensus 508 lkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 508 LKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHhcCchHHHHHHHHHHHHHhhh
Confidence 7788889999998887777666553
No 136
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.92 E-value=1 Score=61.18 Aligned_cols=372 Identities=12% Similarity=0.147 Sum_probs=186.8
Q ss_pred hccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh----ccCchhh-HHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 75 KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA----EVTTSSL-AQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 75 ~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~----~~~~~~~-~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
..++.+.+..++..||..-..+-.....-....|..+++ ++..-.+ -.++|..+-+.+...-... +..++..|
T Consensus 1080 ~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~--n~~va~fA 1157 (1780)
T PLN03076 1080 QKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSE--NLSIAIFA 1157 (1780)
T ss_pred ccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCc--chhHHHHH
Confidence 356667788888888875321100000112344444443 3322111 1334444445444422222 46789999
Q ss_pred HHHHHHHHHHhhhh--hh--hhHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCC
Q 000941 150 LDILCDVLHKFGNL--MS--NDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKG 221 (1215)
Q Consensus 150 l~~L~~l~~~~g~~--l~--~~~~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~ 221 (1215)
++.|-.+.-+|-.. +. .+...+++-+...+.+ ....+|...+.|+..+....++.+ |+.++..+-....+..
T Consensus 1158 idsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~ 1237 (1780)
T PLN03076 1158 MDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH 1237 (1780)
T ss_pred HHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc
Confidence 99998888776542 22 2334555555554443 345899999999999988777664 6666665555554433
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhc----cchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHH
Q 000941 222 AKPEMIRTNIQMVGALSRAVGYRFG----PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1215)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~----~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii 297 (1215)
....+.+++++..|.+..-..+. ..+..+|..+..+.... .+.++ ++.+++.|-.... .+.
T Consensus 1238 --e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~--~~~nI---SL~AI~lL~~~~~-~La------- 1302 (1780)
T PLN03076 1238 --KNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR--FNKDI---SLNAIAFLRFCAT-KLA------- 1302 (1780)
T ss_pred --HHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc--Ccccc---cHHHHHHHHHHHH-HHH-------
Confidence 35677888888877653211111 23445555555555432 22333 3444443321111 010
Q ss_pred HHHHHHh-c-cCCC---CCCCCCCCc-ccccc-cccch----hhh-----cCCCCCCCCccHHHHHHHHHHHHHHHhhCc
Q 000941 298 HLTLEYL-S-YDPN---FTDNMEEDS-DDEAY-EEEEE----DES-----ANEYTDDEDASWKVRRAAAKCLAALIVSRP 361 (1215)
Q Consensus 298 ~~~l~~l-~-~dpn---~~~~~d~d~-~~~~~-~~~~d----~~~-----~~~~~dd~d~swkvR~~Aa~~L~~li~~~~ 361 (1215)
..-.... . .++. .....+.+. ++... .+.++ |-. -+--. |+ --.||..|...|-.++..++
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D~--RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-DP--RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-CC--cHHHHHHHHHHHHHHHHHhh
Confidence 0000000 0 0000 000000000 00000 00000 000 00000 11 13799999999999998887
Q ss_pred hhhHH-HH----HHHHHHHHhhhcc------------------cc-hh----HHHHHHHHHHHHHHHhcccCCCcCCCCC
Q 000941 362 EMLSK-LY----EEACPKLIDRFKE------------------RE-EN----VKMDVFNTFIELVRQTGNVTKGQIDNNE 413 (1215)
Q Consensus 362 ~~l~~-~~----~~i~p~Li~~~~d------------------~e-~~----Vr~~~~~~l~~l~~~~~~~~~~~~~~~~ 413 (1215)
..+.+ +| ..++..+...++. .+ .+ ....+..++..++.....
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~---------- 1449 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVK---------- 1449 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH----------
Confidence 66653 43 3333333322210 00 00 122223333333322110
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcC
Q 000941 414 LNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLND 478 (1215)
Q Consensus 414 ~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d 478 (1215)
-.+.+...++.++..+..+...++......+...|..|+...+..|++ +...++..+.+.+..
T Consensus 1450 --fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1450 --FYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 112455677888888888888778777778889999999888877775 777777777766653
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.91 E-value=0.0052 Score=54.47 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=66.0
Q ss_pred hHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHH
Q 000941 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK 208 (1215)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~ 208 (1215)
+|.|++.+.+. +++.+|..++.+|+.+ ..+..++.+...++++++.||..|+.+|+.++. +.
T Consensus 1 i~~L~~~l~~~-~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~ 62 (88)
T PF13646_consen 1 IPALLQLLQND-PDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PE 62 (88)
T ss_dssp HHHHHHHHHTS-SSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HH
T ss_pred CHHHHHHHhcC-CCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 46777878443 3799999999999832 345678888888899999999999999998863 34
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~ 235 (1215)
.++.+.+.+.++++ ..+|..+++++|
T Consensus 63 ~~~~L~~~l~~~~~-~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDD-EVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-HHHHHHHHhhcC
Confidence 66777777777654 356788888775
No 138
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.89 E-value=0.0035 Score=55.61 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=65.5
Q ss_pred HHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 6 MAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 6 l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
|..+++.+ ++.|+.+|..|+.-|. ++. ..++++.++..++|+++.||..|+..||.+- -..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~--------~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG--------ELG---DPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH--------CCT---HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH--------HcC---CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHH
Confidence 45678888 8999999999988885 111 2377899999999999999999999999773 245
Q ss_pred HHHHHHHHhcCCCcc-hhhHHHHHHH
Q 000941 85 MTDKLCIKLLNGKDQ-HRDIASIALK 109 (1215)
Q Consensus 85 lv~~L~~~~~~~~~~-~r~~a~~aL~ 109 (1215)
.++.|...+.++++. +|..+..+|.
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777777777765544 5777777663
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.83 E-value=2.1 Score=52.56 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=105.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch
Q 000941 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1215)
Q Consensus 380 ~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~ 459 (1215)
..++...|.++++.+.+.+.+ | ..+..++|.+++.+. ..+.+.|.-+.-=+...++..|
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~-G---------------~dmssLf~dViK~~~----trd~ElKrL~ylYl~~yak~~P- 87 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSL-G---------------EDMSSLFPDVIKNVA----TRDVELKRLLYLYLERYAKLKP- 87 (757)
T ss_pred cccChHHHHHHHHHHHHHHhc-C---------------CChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhccCH-
Confidence 445566676666554444322 1 135666677766554 4555566554444444444433
Q ss_pred hhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 460 CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 460 ~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
...--.++.+.+-++|++ +.+|..|+.+++.+ .....++.+++++.+++.|+.+.|+..|.-++..+.
T Consensus 88 ---~~~lLavNti~kDl~d~N--~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 88 ---ELALLAVNTIQKDLQDPN--EEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred ---HHHHHHHHHHHhhccCCC--HHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 122334677777788776 78999999998876 233568899999999999999999999999988887
Q ss_pred HhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 000941 540 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1215)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~ 591 (1215)
+.= + ++.+-.. +....... ..|.++.|..+|+.++..+-.-
T Consensus 156 ~ld-~-------~l~~~~g-~~~~l~~l--~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 156 RLD-K-------DLYHELG-LIDILKEL--VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hcC-H-------hhhhccc-HHHHHHHH--hhCCCchHHHHHHHHHHHhchh
Confidence 531 1 1111110 11111122 2478899999999999876543
No 140
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.80 E-value=0.014 Score=58.60 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHH------------HHHHhcccChhhHHHHHHHHHH
Q 000941 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKS------------INRQLREKSIKTKVGAFSVLRE 452 (1215)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~------------l~~~L~~~~~~~r~~~~~~l~~ 452 (1215)
.||..++.++.++++..... .+..+|+.+++. +.-.+.|+++++|.+|+.++..
T Consensus 1 kvR~~Al~~L~al~k~~~~r--------------~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~ 66 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKR--------------SLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAA 66 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCc--------------eeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHH
Confidence 37999999999999875321 223333333321 2334678999999999999999
Q ss_pred HHHhCch-------------hhh---hhhh----hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh-hhhh
Q 000941 453 LVVVLPD-------------CLA---DHIG----SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKA 511 (1215)
Q Consensus 453 L~~~~~~-------------~l~---~~~~----~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~ 511 (1215)
|.+.... .|. ..+. ++=..+..++..+.. .......+.++..++...+-+.+++ ++..
T Consensus 67 lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~-~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~ 145 (182)
T PF13251_consen 67 LLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS-PPVLTQLLKCLAVLVQATPYHRLPPGLLTE 145 (182)
T ss_pred HHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHccCChhhcCHhHHHH
Confidence 9874322 122 1222 223334445554433 4566688899999998877667766 7888
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000941 512 LSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1215)
Q Consensus 512 l~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1215)
++..+...+.+.+..++..++.+++.++..
T Consensus 146 ~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 146 VVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888888888888889999999999988754
No 141
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.79 E-value=4.8 Score=56.06 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=79.0
Q ss_pred ChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhc---cchhHHHHHHHHHHHHc
Q 000941 553 FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG---NEITRLTAVKAFAVIAA 629 (1215)
Q Consensus 553 ~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~---~e~~r~~a~~al~~i~~ 629 (1215)
..+|+.+++..++..++ +.++.+-..+..++|+++...|..+......+++.+.+.+. +..-|.++.++++.+..
T Consensus 642 i~~~v~~~l~~~~~~~~--~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQ--DPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHhhcCchHHHHHHHHh--ccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 45778887777777766 55667778889999999999997666666677777776653 44567889999999985
Q ss_pred CCCCCchhHH--HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Q 000941 630 SPLHIDLTCV--LEHVIAELTAFLR-KANRALRQATLGTMNSL 669 (1215)
Q Consensus 630 s~~~~~~~~~--l~~~l~~L~~~L~-~~~~~lr~~al~~L~~l 669 (1215)
+. +....|| .+.++..|...+. ...+.+|..++..++..
T Consensus 720 ~~-~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 720 ST-GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred cc-ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 43 2222332 3455555555554 34567888888888743
No 142
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.78 E-value=0.0057 Score=57.84 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=81.5
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhc
Q 000941 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1215)
Q Consensus 171 ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 246 (1215)
+++.+.+.+.++++.+|+.++.+++.++...+.. .+. ..++.+++.+.+++ ..+++.++.+++.++...+..-.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCcHHHHH
Confidence 5566777788888899999999999999764333 233 67888888887754 47889999999999987653322
Q ss_pred cch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHH
Q 000941 247 PHL-GDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1215)
Q Consensus 247 ~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1215)
.+. ..+++.+++.++ +.+.++|+.+..++..++
T Consensus 86 ~~~~~g~l~~l~~~l~---~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLD---SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHh---cCCHHHHHHHHHHHHHhh
Confidence 223 347888888887 467899999999988765
No 143
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.74 E-value=1.2 Score=51.36 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH------HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH----HHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH------ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATI 211 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~------~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~ 211 (1215)
..++....+..+.+++...+....-++ +.....++..|..++.-+...|...++.++.+-+.. ....+++
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~ 146 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFN 146 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHH
Confidence 567888888888888887654332222 345566777888888889999999999998653332 2334555
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh
Q 000941 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1215)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1215)
.+...++++.. +..+..++++++.+.+.-+.|
T Consensus 147 ~l~~~l~~~~~-~~~~~~~v~~L~~LL~~~~~R 178 (429)
T cd00256 147 WLKEQLNNITN-NDYVQTAARCLQMLLRVDEYR 178 (429)
T ss_pred HHHHHhhccCC-cchHHHHHHHHHHHhCCchHH
Confidence 66666665432 356678899999998876544
No 144
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.70 E-value=0.023 Score=56.42 Aligned_cols=93 Identities=15% Similarity=0.274 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHH
Q 000941 368 YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAF 447 (1215)
Q Consensus 368 ~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~ 447 (1215)
|+..+|.+.+.++|.++.-|.-+.+....++...+ . ..+...+|+++..+.+.|+.+++.+...++
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~-------------~-~kilPvlPqLI~plk~AL~tr~~~V~~~~L 101 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGG-------------G-EKILPVLPQLIIPLKRALNTRDPEVFCATL 101 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcc-------------h-hHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66788888889999988888889999999998721 1 256788999999999999999999999999
Q ss_pred HHHHHH---HHhCchhhhhhhhhhhHHHHH
Q 000941 448 SVLREL---VVVLPDCLADHIGSLIPGIEK 474 (1215)
Q Consensus 448 ~~l~~L---~~~~~~~l~~~~~~lv~~l~~ 474 (1215)
.+|..| ....+..|.+|+.+++|.+.-
T Consensus 102 ~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 102 KALQQLVTSSDMVGEALVPYYRQLLPVLNL 131 (183)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999 445577899999999998874
No 145
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=2.2 Score=50.81 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=76.3
Q ss_pred ccCCccchhhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCC
Q 000941 936 CESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQD 1015 (1215)
Q Consensus 936 ~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d 1015 (1215)
..+.+++||+.|..+||=++.-+|+.+...+.-+..+-++.+|+-+.-++.-.+.+.+. ..++.-+=.+..|+.
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~ 637 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPV 637 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChH
Confidence 44667899999999999999999887655444444588999999988888877777653 233333333456888
Q ss_pred hHHHHHHHHHHHHHH-hcCcccccchhhhhhHHHHH
Q 000941 1016 RHVRRAAVLALSTFA-HNKPNLIKGLLPELLPLLYD 1050 (1215)
Q Consensus 1016 ~~Vr~~a~~~L~~~~-~~~p~~i~~~l~~llp~l~~ 1050 (1215)
.-||+.|+.++.... +..+.+ .|.+..+-..+.+
T Consensus 638 ~fVRQgAlIa~amIm~Q~t~~~-~pkv~~frk~l~k 672 (929)
T KOG2062|consen 638 DFVRQGALIALAMIMIQQTEQL-CPKVNGFRKQLEK 672 (929)
T ss_pred HHHHHHHHHHHHHHHHhccccc-CchHHHHHHHHHH
Confidence 889999998888755 444443 5666555554443
No 146
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.66 E-value=0.18 Score=58.29 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=122.8
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHH
Q 000941 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1215)
Q Consensus 372 ~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1215)
+..++..+.+.+++||..+.++|+.+- .+.....+...++++++.+|..++.+++
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-------------------------~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-------------------------GRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-------------------------chHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 455666667888889988888776541 1233455566667778888877665554
Q ss_pred HHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHH
Q 000941 452 ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEA 531 (1215)
Q Consensus 452 ~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~a 531 (1215)
... ..-.+.+...|+|.+ +.++.+++..++.+-.. ...|.+...+.|.+..|+..|
T Consensus 143 ~r~-----------~~~~~~L~~~L~d~d--~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA 198 (410)
T TIGR02270 143 AHR-----------HDPGPALEAALTHED--ALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAA 198 (410)
T ss_pred hhc-----------cChHHHHHHHhcCCC--HHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHH
Confidence 421 112345555666544 67888888888876321 223445566788888888888
Q ss_pred HHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhh
Q 000941 532 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM 611 (1215)
Q Consensus 532 l~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L 611 (1215)
+..+..+- . ..-++.+..... +.....+..+...++.. |. +..++.|...+
T Consensus 199 ~~al~~lG----~-------------~~A~~~l~~~~~--~~g~~~~~~l~~~lal~----~~------~~a~~~L~~ll 249 (410)
T TIGR02270 199 LEAGLLAG----S-------------RLAWGVCRRFQV--LEGGPHRQRLLVLLAVA----GG------PDAQAWLRELL 249 (410)
T ss_pred HHHHHHcC----C-------------HhHHHHHHHHHh--ccCccHHHHHHHHHHhC----Cc------hhHHHHHHHHh
Confidence 87775541 1 011122222122 22233333333333321 21 36677777777
Q ss_pred ccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000941 612 GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLV 670 (1215)
Q Consensus 612 ~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 670 (1215)
+++.+|..++.++|.+... ..++.|...+.. ..++..+-+++..|.
T Consensus 250 ~d~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d--~~~aR~A~eA~~~It 295 (410)
T TIGR02270 250 QAAATRREALRAVGLVGDV-----------EAAPWCLEAMRE--PPWARLAGEAFSLIT 295 (410)
T ss_pred cChhhHHHHHHHHHHcCCc-----------chHHHHHHHhcC--cHHHHHHHHHHHHhh
Confidence 7778999999999977532 234444454443 337888888888774
No 147
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.65 E-value=0.039 Score=63.16 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=120.1
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHHHh
Q 000941 813 VKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQI 892 (1215)
Q Consensus 813 l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l 892 (1215)
.+.....+.+.....+..+...+|+++. ....+.+...+.+.++.+|..|+.+||.+.. +..+|.+++.+
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---~~a~~~li~~l 114 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGD---PEAVPPLVELL 114 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---hhHHHHHHHHH
Confidence 4444444444322235566666776643 3456778888888888999999998887653 44577777777
Q ss_pred hc-cc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCc------------cchhhHHHHHhhhccccC
Q 000941 893 DN-QQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEE------------EGVRNVVAECLGKIALIE 958 (1215)
Q Consensus 893 ~~-~~-~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~------------e~~r~~aae~Lg~l~~~~ 958 (1215)
.+ ++ ..|.....+|+.+-.. ..+..++....++. ..+|..+++.||.+..
T Consensus 115 ~~d~~~~vR~~aa~aL~~~~~~--------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-- 178 (335)
T COG1413 115 ENDENEGVRAAAARALGKLGDE--------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-- 178 (335)
T ss_pred HcCCcHhHHHHHHHHHHhcCch--------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--
Confidence 75 32 3466667777665321 11223333332221 1468888888887654
Q ss_pred CCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000941 959 PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFA 1030 (1215)
Q Consensus 959 ~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~ 1030 (1215)
....|.+.+.+.+....+|..+..++..+..+. ......|.+.++|++..||..++.+|+..-
T Consensus 179 -~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 179 -PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred -hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 345566777778878889999998888766654 234566778899999999999998887743
No 148
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.64 E-value=0.065 Score=53.68 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=107.7
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH----HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL----AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~----~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
....+...+...++++++.-|=.++..+..++...+.+.| ...+..+++.+++++. ....+.++.++..|.....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~-~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDP-PSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 5566777788888888888888999999999998866644 5577778888887654 4678889999998887653
Q ss_pred -------hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHh
Q 000941 243 -------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 243 -------~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
.-..|+++.+++.+++.++ ++...+.++.++..++..+|.-++||..++-..+..++
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2358899999999999775 25677889999999999999999999999998887765
No 149
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.63 E-value=0.0092 Score=56.41 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=83.1
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhh-hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcc
Q 000941 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG-SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1215)
Q Consensus 427 i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~-~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1215)
+++.+.+.+.+.++..|..++.++..++...+......+. ..+|.+...+.+++ +.++..++.+++.+....+ ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~~-~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGPE-DNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCcH-HHH
Confidence 3455566667777889999999999998765554444444 78888888888754 7889999999999987532 222
Q ss_pred hhhh-hhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 506 HPYI-KALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 506 ~~~l-~~l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
..+. ..+++.+...+++.+.+++..++.++..++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2223 348999999999888899999999988775
No 150
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=1.6 Score=46.75 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcCH-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh-hccch----hhhHHHHHHhhccc
Q 000941 190 SVSCIASLASSLSD-DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR-FGPHL----GDTVPVLIDYCTSA 263 (1215)
Q Consensus 190 a~~~l~~l~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~-~~~~l----~~iip~ll~~~~~~ 263 (1215)
.+.||..+...... .+..++|+.+-.++..++. .++..++..+|.+.+.|... +...+ ..+.|.++.++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiadda--sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-- 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDA--SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-- 138 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcc--hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--
Confidence 45566555554433 3567788888888877654 56667788888888876522 11111 456777888877
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 000941 264 SENDEELREYSLQALESFLL 283 (1215)
Q Consensus 264 ~~~d~elre~al~~l~~l~~ 283 (1215)
.+|+++..++.+.+.+++.
T Consensus 139 -geddeVAkAAiesikrial 157 (524)
T KOG4413|consen 139 -GEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred -CCcHHHHHHHHHHHHHHHh
Confidence 4678888888887777654
No 151
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.48 E-value=0.88 Score=53.10 Aligned_cols=304 Identities=15% Similarity=0.170 Sum_probs=181.9
Q ss_pred chhhhhHHHHHHHhcccc--CCCChHHHHHHHHHHHHhccC-----------ccc-----chh----HHHHHHHHHHhhc
Q 000941 19 DFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLDD-----------VAG-----DVS----GLAVKCLAPLVKK 76 (1215)
Q Consensus 19 d~R~mAl~dL~~~l~~~~--~~~~~~~~~~i~~~ll~~L~D-----------~~~-----~Vq----~~A~~~l~~l~~~ 76 (1215)
+.+..+|++|...++... ..++++....++.++-.-+=- ++. +.. ..+...+..++..
T Consensus 41 e~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~ 120 (409)
T PF01603_consen 41 EIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIES 120 (409)
T ss_dssp HSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHHC
Confidence 446789999999998876 677887777777776532211 111 111 2444555555543
Q ss_pred cCh-----hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHH
Q 000941 77 VSE-----PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1215)
Q Consensus 77 ~~~-----~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~ 151 (1215)
... ..-..++.+|+..+.++++..|+.....|..+....+. ...-+.+.+...+.+.+.... ...-..+.++
T Consensus 121 ~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~--~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elLe 197 (409)
T PF01603_consen 121 PPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN--LRSFIRKSINNIFYRFIYETE-RHNGIAELLE 197 (409)
T ss_dssp TT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT--THHHHHHHHHHHHHHHHHTTS---STHHHHHH
T ss_pred ccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCcc-cccCHHHHHH
Confidence 222 12347888899988888888899888888888776653 333344445555555555433 4556778999
Q ss_pred HHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 000941 152 ILCDVLHKFGNLMSN-DHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRT 229 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~ 229 (1215)
+++.++..|..-+.+ +..-+...+++....+.. .--..=..|+..+...-+. +...++..++..--..+ +...-.
T Consensus 198 il~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~-l~~~~i~~llk~WP~t~--s~Kev~ 274 (409)
T PF01603_consen 198 ILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS-LAEPVIKGLLKHWPKTN--SQKEVL 274 (409)
T ss_dssp HHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHS-SS---HHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCC--chhHHH
Confidence 999999988876655 445566888888877654 3345555566555543221 34445555555433222 233334
Q ss_pred HHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH--HHHhChhhhcccHHHHHHHHHHHhcc
Q 000941 230 NIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES--FLLRCPRDISSYCDEILHLTLEYLSY 306 (1215)
Q Consensus 230 ~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~--l~~~~~~~~~~~l~~ii~~~l~~l~~ 306 (1215)
.+.-++.+....+ ..|.+....+...+-.+++ ...-.+.|.|+..+.. ++. .+..+-..++|.+...+..
T Consensus 275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~---S~h~qVAErAl~~w~n~~~~~----li~~~~~~i~p~i~~~L~~ 347 (409)
T PF01603_consen 275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS---SPHFQVAERALYFWNNEYFLS----LISQNSRVILPIIFPALYR 347 (409)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT---SSSHHHHHHHHGGGGSHHHHH----HHHCTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHCCHHHHH----HHHhChHHHHHHHHHHHHH
Confidence 5777777877665 5677777778888877776 4677788887765532 221 2344556677777666531
Q ss_pred CCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH--HHHHHHHHHHHHHHhhCchhhHH
Q 000941 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 307 dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw--kvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
.- ..-| .||..|..++..+.+..|+.+..
T Consensus 348 ~~-------------------------------~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 348 NS-------------------------------KNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp TT-------------------------------SS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HH-------------------------------HHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 00 0113 59999999999999888765543
No 152
>PF05536 Neurochondrin: Neurochondrin
Probab=96.42 E-value=3.5 Score=49.93 Aligned_cols=234 Identities=15% Similarity=0.164 Sum_probs=145.3
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCC-CC-----hHHHHHHHHHHHHhccCc----ccchhHHHHHHHHHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFK-AD-----ADLEVKLSNIVVQQLDDV----AGDVSGLAVKCLAPL 73 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~-~~-----~~~~~~i~~~ll~~L~D~----~~~Vq~~A~~~l~~l 73 (1215)
..+..++.-+++.|..-||.|+.-+.+.+...... .+ +..-.++++.||+.-..| ..+-+..|+..+..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56778888889998667999999998888653211 00 011134556666554433 245677888888877
Q ss_pred hh---ccChhhHHHHHHHHHHHhcCCCc-chhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 74 VK---KVSEPRVVEMTDKLCIKLLNGKD-QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 74 ~~---~~~~~~~~~lv~~L~~~~~~~~~-~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
.. -...+++..-+|.|.+.+.+... ...+-+..+|..+. ..+. ....-+-...+|.|.+.+.+ .+.....+
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~-G~~aLl~~g~v~~L~ei~~~---~~~~~E~A 159 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPE-GAKALLESGAVPALCEIIPN---QSFQMEIA 159 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcH-hHHHHHhcCCHHHHHHHHHh---CcchHHHH
Confidence 64 12235677888999998876655 44444555555555 3332 11111223466788877766 35678889
Q ss_pred HHHHHHHHHHhhhhhhhh----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---H------HHHHHHHHHHHH
Q 000941 150 LDILCDVLHKFGNLMSND----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---D------LLAKATIEVVRN 216 (1215)
Q Consensus 150 l~~L~~l~~~~g~~l~~~----~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~------~~~~l~~~ll~~ 216 (1215)
+.++..++...+...-+. ...+++.+-..+...+...|-..+..|+.+....+. . ....+...+...
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 999999998887543222 234444444444444445566677777777665531 1 245566666666
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhhhh
Q 000941 217 LRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1215)
Q Consensus 217 l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1215)
+++ ......|..++.+.+.+.+..|.
T Consensus 240 L~s-r~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 240 LQS-RLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHhCh
Confidence 655 33457888999999999998774
No 153
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.38 E-value=3.9 Score=50.12 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc---hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHH
Q 000941 575 QEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651 (1215)
Q Consensus 575 ~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L 651 (1215)
+-||..++.++|.++-.-++ -....+|.|++.|... ..|.+-+-+++.++.+- ...+..-+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHh
Confidence 45788888888887654332 2355889998887432 35666677777776331 233455677788889
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhCCCCCcchHH-HHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 652 RKANRALRQATLGTMNSLVVAYGDKIGASAYE-VIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 652 ~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
++++.-+|..++..|..++..--- ++-. -++..+..++ +.+..++..+=..++.+++.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~v----Kw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIV----KWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhh----hcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999864211 1111 2344444444 45666777777788888775
No 154
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.30 E-value=0.065 Score=66.58 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccCh---hhHHHHHHHHHHHhcC-----CC------------------
Q 000941 45 VKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSE---PRVVEMTDKLCIKLLN-----GK------------------ 97 (1215)
Q Consensus 45 ~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~---~~~~~lv~~L~~~~~~-----~~------------------ 97 (1215)
..++..+...+. +.|..+|..|.+++..++..+.. .....++.+.|..... +.
T Consensus 647 ~p~I~plm~tik~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~a~~~~~~~~~~~~~~s 726 (1549)
T KOG0392|consen 647 NPIIRPLMETIKKEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLGASIRSIHPMVDPLIND 726 (1549)
T ss_pred hhHHHHHHHHHHhhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccccccccccccccccccc
Confidence 334444444443 66778999999999988865443 2233445555543210 00
Q ss_pred -------------c-------chhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 98 -------------D-------QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 98 -------------~-------~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
+ -.|..+-.+|+.++..++. ++... ...+...|+..++...+..+--...+.++..+.
T Consensus 727 ~~~~~~~~~~~g~eea~~~~~~errgael~L~~l~~~fg~-sl~~k-lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~ 804 (1549)
T KOG0392|consen 727 YTRMVASNLAPGLEEAQALISFERRGAELFLKILSKMFGG-SLAAK-LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLA 804 (1549)
T ss_pred hhhhhccccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhH-HHHHh-cchHHHHHHHhhhccCCCCcchhhhHHHHHHHH
Confidence 0 0145666677776665543 22211 122333344444432211223344555566666
Q ss_pred HHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000941 158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 158 ~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1215)
...|..+.+ .-..++.++..+.++.+.+|-.+..|++.+......+....+++.++-.+.+.+ +...|..+...+.-+
T Consensus 805 ~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~-~~~~r~~a~e~~~~l 882 (1549)
T KOG0392|consen 805 PLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD-KFVRRQGADELIELL 882 (1549)
T ss_pred Hhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh-hHhhhhhHHHHHHHH
Confidence 666666655 446677888888899999999999999999987777755555555554444332 123455667788888
Q ss_pred HhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 238 SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 238 ~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
.......+.||.+-++|.++..+. +..+.+|+++-++|..++...|
T Consensus 883 ~~~l~~~l~~~~~Llv~pllr~ms---d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 883 DAVLMVGLVPYNPLLVVPLLRRMS---DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred HHhhcccccccceeehhhhhcccc---cchHHHHHHHHHHHHHHhcccc
Confidence 888878889999999999999887 5778899999999888876655
No 155
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.045 Score=63.97 Aligned_cols=164 Identities=23% Similarity=0.222 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhccCCccchhhHHHHHhhhccccC---CC----cchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhh
Q 000941 925 VEKILNLLFNHCESEEEGVRNVVAECLGKIALIE---PA----KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKID 997 (1215)
Q Consensus 925 ~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~---~~----~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~ 997 (1215)
+..++..+++..+..+-.||-.+...|..+.-.. ++ .+.-.+.+++.++-|.+|--++-++-+.-.+..+.-.
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 4555555565555555566644444443333211 12 2334445566888999998888888766644433211
Q ss_pred hhhhHhHHHHHHhcc-CCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChh
Q 000941 998 EIIFPEISSFLMLIK-DQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLE 1076 (1215)
Q Consensus 998 ~~l~~~i~~~l~~l~-D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~ 1076 (1215)
+....+...++ ||+++|||+|+.++..-. .-+|.+...+. |=...
T Consensus 163 ----~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------------sTlp~IveRar------------------DV~~a 208 (892)
T KOG2025|consen 163 ----PVVNLLKDLIQNDPSDEVRRAALSNISVDN------------STLPCIVERAR------------------DVSGA 208 (892)
T ss_pred ----cHHHHHHHHHhcCCcHHHHHHHHHhhccCc------------ccchhHHHHhh------------------hhhHH
Confidence 23444555555 999999999997775421 23566665543 44467
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCC-cchhHhhHHHHHH
Q 000941 1077 LRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILS 1125 (1215)
Q Consensus 1077 ~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~ 1125 (1215)
.||.+|+-+..=++.+ .+++..+. -.+..||.| +.++|--+..+|.
T Consensus 209 nRrlvY~r~lpkid~r--~lsi~krv-~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 209 NRRLVYERCLPKIDLR--SLSIDKRV-LLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HHHHHHHHhhhhhhhh--hhhHHHHH-HHHHHhhhhhhhHHHHHHHHHHH
Confidence 8999998766666555 35566777 378899999 8888866655543
No 156
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.28 E-value=0.11 Score=52.13 Aligned_cols=138 Identities=19% Similarity=0.250 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC-chhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~-~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
...++.++..+.+.++++++..|..++.++..+++.. +..|..+....+..+...++... +..++..++..+..++..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 3456778888889999999999999999999999987 55677888888999999988744 345666677777766543
Q ss_pred CC--C----CcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHh
Q 000941 500 HS--P----PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 568 (1215)
Q Consensus 500 ~~--~----~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l 568 (1215)
.. | +...|+++.+++.+++.+++ ......++.++..+.... +..|+||..++-..+...+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-------ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-------PTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-------CccccchHHHHHHHHHHHh
Confidence 21 1 33467899999999988875 355677888888888765 3468898888877666543
No 157
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.26 E-value=0.054 Score=49.64 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=69.9
Q ss_pred HHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 209 ATIEVVRNLRS--KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 209 l~~~ll~~l~~--~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
++.++-..+.+ ...+...++.++.+++.+.+.++..+.++.++|+-.+...++ .+++|+.+++++..|+...+
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~-----~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE-----IPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHHCC
Confidence 44444444444 222246778899999999998877888888888877777664 45899999999999999876
Q ss_pred -hhhcccHHHHHHHHHHHh
Q 000941 287 -RDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 287 -~~~~~~l~~ii~~~l~~l 304 (1215)
+++.|++++++..+++++
T Consensus 87 ~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 87 EEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 579999999999988876
No 158
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.26 E-value=3.2 Score=47.87 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhccc-------ChhhHHHHHHHHHHHHHhC-
Q 000941 386 VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK-------SIKTKVGAFSVLRELVVVL- 457 (1215)
Q Consensus 386 Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~-------~~~~r~~~~~~l~~L~~~~- 457 (1215)
-|.+++..+...++..... .....+++.++.+++.+.+-+... +.+....|+.+|+.+....
T Consensus 9 ~r~daY~~l~~~l~~~~~~----------~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~ 78 (372)
T PF12231_consen 9 SRLDAYMTLNNALKAYDNL----------PDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPE 78 (372)
T ss_pred HHHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHH
Confidence 3566666666655543210 122357888888888888877652 2345667888888776421
Q ss_pred -chhhhhh-hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCC--chHHHHHHHH
Q 000941 458 -PDCLADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER--YYKVTAEALR 533 (1215)
Q Consensus 458 -~~~l~~~-~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~--~~~v~~~al~ 533 (1215)
-..+.+. ..-++......+.+++.+..+...++.++.. ...++..+.......+-.++..+.++ ...+..+++.
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~ 156 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLN 156 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHH
Confidence 1123332 2236777777787776544555555555443 23334444444444444444555553 2368889999
Q ss_pred HHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHH-hhc
Q 000941 534 VCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD-RMG 612 (1215)
Q Consensus 534 ~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~-~L~ 612 (1215)
++..++...+. .+..+...=++.++..+- +....+|.+|+...-.+...++.. ..+...+.-.++ .+.
T Consensus 157 i~~~ll~q~p~-------~M~~~~~~W~~~l~~~l~--~~~k~ir~~a~~l~~~~~~~l~~~--~~~s~~~~~~~~~~~~ 225 (372)
T PF12231_consen 157 IYKRLLSQFPQ-------QMIKHADIWFPILFPDLL--SSAKDIRTKAISLLLEAKKCLGPN--KELSKSVLEDLQRSLE 225 (372)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHhccccc
Confidence 99988876532 344444444455555554 345678988776655554444421 111111111111 111
Q ss_pred cchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CC-cchHHHHHHHhh
Q 000941 613 NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK-IG-ASAYEVIIVELS 690 (1215)
Q Consensus 613 ~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~-~~-~~~~~~~l~~l~ 690 (1215)
++ .+...+.+.|..++...+.. ..+......+..-.+.. +. -+.+...+....
T Consensus 226 ~~-----------------------~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 226 NG-----------------------KLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred cc-----------------------cHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 11 23333444444444331111 11222222221111111 11 133455555555
Q ss_pred hhcCCCChhhHHHHHHHHHHHhhc
Q 000941 691 TLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 691 ~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
..++.+|+.++..|+.+|..++-.
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 677889999999999999998864
No 159
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.24 E-value=0.06 Score=48.88 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=70.5
Q ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 209 ATIEVVRNLRSKGA--KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 209 l~~~ll~~l~~~~~--~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
++..+-+.+.+.+. +...++.++.+++.+.+.+|..+..++++|+-.+...++ .+|+|+.|+.++..|+...+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~-----~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE-----IPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHHhCC
Confidence 44444445544331 235578899999999998888888888888888877774 57799999999999999876
Q ss_pred -hhhcccHHHHHHHHHHHh
Q 000941 287 -RDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 287 -~~~~~~l~~ii~~~l~~l 304 (1215)
+++.|.+++++..+++++
T Consensus 87 ~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 87 EEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 468889999998888775
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.20 E-value=2.3 Score=49.18 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=156.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccCcc-cchhhhhHHHHHHhhcc---chhHHHHHHHHHHHHcCCCCCchhH--HHHHHHHH
Q 000941 573 QDQEVKECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGN---EITRLTAVKAFAVIAASPLHIDLTC--VLEHVIAE 646 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~l~~~~~~~l-~~~~~~~l~~L~~~L~~---e~~r~~a~~al~~i~~s~~~~~~~~--~l~~~l~~ 646 (1215)
.|.-+...|+..++.++....... ...++.++..+...+++ ......+++++..+...+ .+.. |-...++.
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~~~~v~~ 189 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVLADGVPT 189 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHHccCHHH
Confidence 367889999999999887543322 12444455566666653 345677889998887432 1111 11234566
Q ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCCh-hhHHHHHHHHHHHhhccc-CCCc--
Q 000941 647 LTAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDL-HMTALALELCCTLMADKR-SSPN-- 720 (1215)
Q Consensus 647 L~~~L~~--~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~al~~l~~l~~~~~-~~p~-- 720 (1215)
|.+.|+. .+.++...++-|+..+.-.... ...-.-..+++.+..+++.+-. -+...++.++..++.... ..+.
T Consensus 190 L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 190 LVKLLSNATLGFQLQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhccHHH-HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence 6666664 2457788888888877433221 0000012355555555544332 355677778877776310 0000
Q ss_pred hhhhhhhhhHHHHHHHhhhcccchhhhH-HHHHHHHHHHhhc--CCChHHHHHHHhccCCCCCCCcchh-hhhhhhHHHH
Q 000941 721 VGLAVRNKVLPQALALIKSSLLQGQALV-ALQSFFAALVYSA--NTSFDTLLDSLLSSAKPSPQSGGVA-KQAMYSIAQC 796 (1215)
Q Consensus 721 ~~~~~~~~~l~~l~~ll~s~~l~~~~l~-~l~~~~~~l~~~~--~~~~~~l~~~ll~~~~~~~~~~~~~-~~~~~~~a~~ 796 (1215)
........=++.+++.+...-.....+. .+..+-+.+.+.. -..|..+...+....-.= +|.+-. +.=..++.|
T Consensus 269 ~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~se~FW~EN~~k- 346 (429)
T cd00256 269 AALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKSEKFWRENADR- 346 (429)
T ss_pred HHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCCchHHHHHHHH-
Confidence 1111222222334444433322333332 2222222222221 235777766665332211 121100 111122221
Q ss_pred HHHHHhhcCCcchhhHHHHHHHHhcCCCchh-hHHHHHHHhhhhccCCCCC--c--cchHHHHHHhcCCCchhHhhHHHH
Q 000941 797 VAVLCLAAGDQKCSSTVKMLTDILKDDSSTN-SHLALLCLGEIGRRKDLSS--H--EHIENVIIESFQSPFEEIKSAASY 871 (1215)
Q Consensus 797 i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~lal~~lgei~~~~~~~~--~--~~l~~~ll~~l~~~~e~vR~aAa~ 871 (1215)
+... . ..++..+...+..+.++. ...|++=+||+.++.+... . -...+.+++++++++++||.-|-.
T Consensus 347 ---f~~~----~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 347 ---LNEK----N-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred ---HHhc----c-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 1111 1 346666777775433332 5678888999998874321 1 136778899999999999999999
Q ss_pred HHHhhhhcC
Q 000941 872 ALGNIAVGN 880 (1215)
Q Consensus 872 aLG~l~~~~ 880 (1215)
|++++...|
T Consensus 419 avQklm~~~ 427 (429)
T cd00256 419 AVQKLMVHN 427 (429)
T ss_pred HHHHHHHhc
Confidence 999987665
No 161
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.18 E-value=0.054 Score=58.12 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HH
Q 000941 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN---DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LL 206 (1215)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~---~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~ 206 (1215)
+|+..|+..+ ++.++..++-+++.... ..... ..-..++.+...+.++++.+|.+|+.++..++...... ..
T Consensus 16 ~Ll~lL~~t~-dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 16 KLLCLLESTE-DPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 5555566543 68899999888876422 11111 12244677888899999999999999999998766444 46
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 207 ~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
+..++.+.+.+.+..++++.+..++.++..+.-.- .....+...+|.++..+. ..+..+|..++..+-.+..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~---~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLS---SGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHH---cCChHHHHHHHHHHHHhcc
Confidence 66778888777665555677788888988886432 222233444555555555 3577888888888777654
No 162
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.16 E-value=0.045 Score=54.44 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=72.7
Q ss_pred hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 465 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 465 ~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
+..++|.+...+.+.. ...+.-|...+..+++..+++.+.|.++++++++..+++.++..|...++.+++.++....-
T Consensus 36 y~~~Lpif~dGL~Et~--~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE--HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhhccC--ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4456677777776654 34566667777777776566788899999999999999999999999999999999644211
Q ss_pred CCcCCCCCChhcHHHHHHHHH
Q 000941 545 SVEGLGFDFKPYVQPIYNAIM 565 (1215)
Q Consensus 545 ~~~~~~~~~~~~l~~l~~~l~ 565 (1215)
.++.+.||..+++|.+-
T Consensus 114 ----vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 114 ----VGEALVPYYRQLLPVLN 130 (183)
T ss_pred ----hhHHHHHHHHHHHHHHH
Confidence 15578999999998764
No 163
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.15 E-value=0.67 Score=51.08 Aligned_cols=190 Identities=15% Similarity=0.158 Sum_probs=126.1
Q ss_pred hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000941 464 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR 543 (1215)
Q Consensus 464 ~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1215)
+-..+...+.+||+- .-++.++..|+..+..+++..+++.+...+.-..|.+...+....-.|+-.-+..+....-.+
T Consensus 51 ~k~~v~krLaqCL~P-~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL- 128 (307)
T PF04118_consen 51 HKLQVSKRLAQCLNP-ALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPL- 128 (307)
T ss_pred cHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc-
Confidence 444556666777763 345789999999999999999888887766666677766666555567777777777765433
Q ss_pred CCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHH
Q 000941 544 PSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKA 623 (1215)
Q Consensus 544 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~a 623 (1215)
+..+.|.+..++..++..+. |...|+.++++..+-.+....|+. -+++.++-.+ ++++..|..|+.-
T Consensus 129 ------~~~L~p~l~~li~slLpGLe--de~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~i---i~sp~~Rl~al~~ 195 (307)
T PF04118_consen 129 ------GPALRPCLKGLILSLLPGLE--DEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCI---ITSPSRRLGALNY 195 (307)
T ss_pred ------cHHHHHHHHHHHHHhccccc--cCCchHHHHHHHHHHHHHHhcChh--HHHHHHHHHH---hcCcchhHHHHHH
Confidence 23577888888888888775 456889999999998888777653 1333333333 3667788888777
Q ss_pred HHHHHcCCC-------CCc----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000941 624 FAVIAASPL-------HID----LTCVLEHVIAELTAFLRKANRALRQATLGTMNS 668 (1215)
Q Consensus 624 l~~i~~s~~-------~~~----~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~ 668 (1215)
+..-..... ..+ +.+-..-++..+...+.+++--++..++..|-.
T Consensus 196 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 196 LLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 665432111 000 111223456667777777777777777665544
No 164
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.14 E-value=0.28 Score=54.87 Aligned_cols=129 Identities=19% Similarity=0.325 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhccCCCcCCCCCChh--cHHHHHHHHH-HHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHH
Q 000941 531 ALRVCGELVRVLRPSVEGLGFDFKP--YVQPIYNAIM-SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVL 607 (1215)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~--~l~~l~~~l~-~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L 607 (1215)
++..++.+.+.... .+.+ .+..+++.++ ..++ ..+..||+.|+.|+|-++-.-.+ .-.+.++++
T Consensus 3 cL~i~~~lL~~~~~-------~~~~~~~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~ 69 (298)
T PF12719_consen 3 CLSITQSLLENVSS-------SLSPNISLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCLLDKE----LAKEHLPLF 69 (298)
T ss_pred HHHHHHHHHHhccc-------cCCCcchHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHH
Confidence 34455566655431 1222 3446665544 4444 44679999999999987654322 233445555
Q ss_pred HHhhc--cchhHHHHHHHHHHHHcCCCCCchh--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000941 608 VDRMG--NEITRLTAVKAFAVIAASPLHIDLT--------CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 608 ~~~L~--~e~~r~~a~~al~~i~~s~~~~~~~--------~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1215)
...++ ++..+..|++++..+...-....+. .....++..+..++.+.+..++..+.+.+++++.+
T Consensus 70 ~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 70 LQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 55543 4567889999999887321011111 22356888889999988989999999999999865
No 165
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.4 Score=49.97 Aligned_cols=248 Identities=19% Similarity=0.233 Sum_probs=134.0
Q ss_pred HHHHHHHHhcC--CCcchhhhhHHHHHHHhcccc-------C-------------CCChHHHHHHHHHHHHhccCcc--c
Q 000941 5 QMAAILEKITG--KDKDFRYMATSDLLNELNKES-------F-------------KADADLEVKLSNIVVQQLDDVA--G 60 (1215)
Q Consensus 5 ~l~~ll~~~~~--~d~d~R~mAl~dL~~~l~~~~-------~-------------~~~~~~~~~i~~~ll~~L~D~~--~ 60 (1215)
.+..+-+-|.+ .--.-||-|+..|++...... + .+....-..-++.+...|.|.+ +
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 34444444444 223458999999887754321 1 1111233456777777777654 7
Q ss_pred chhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh--ccCchhhHHHHHHhHhHHHHhhhhc
Q 000941 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA--EVTTSSLAQSIHTSLTPQLTKGITL 138 (1215)
Q Consensus 61 ~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~--~~~~~~~~~~~~~~l~p~L~~~l~~ 138 (1215)
.||.-|.+|+|.+.. +..++.|-....++...+++-.-.|++.+=- .+.......++.. +-|.--....
T Consensus 84 mvRhEAaealga~~~-------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S-vdPa~p~~~s- 154 (289)
T KOG0567|consen 84 MVRHEAAEALGAIGD-------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS-VDPAPPANLS- 154 (289)
T ss_pred HHHHHHHHHHHhhcc-------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc-CCCCCccccc-
Confidence 899999999998862 1233334444445555667766677765421 1100000000000 0000000000
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhh-hhH--HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 000941 139 KDMNTEIRCECLDILCDVLHKFGNLMS-NDH--ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVR 215 (1215)
Q Consensus 139 ~~~~~~v~~~al~~L~~l~~~~g~~l~-~~~--~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~ 215 (1215)
.-.+.|...+|.=-.+..++-..+. ..+ +.-+..+...+..++...|..+..++|.+-.-. -++.+.+
T Consensus 155 --sv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-------ai~~L~k 225 (289)
T KOG0567|consen 155 --SVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA-------AIPSLIK 225 (289)
T ss_pred --cHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh-------hhHHHHH
Confidence 0011222222211122222222111 111 455667778888888889999999998876422 3455666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 216 ~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
.|.+.....=+|-.+..++|.|+. +..++.+-++.+ |+++-+|+.|..+|...-.
T Consensus 226 ~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~---D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 226 VLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLG---DEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHH
Confidence 666555444577788999999986 345566666666 5677789999888865543
No 166
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.01 E-value=0.066 Score=47.25 Aligned_cols=87 Identities=18% Similarity=0.100 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..+...++.++|+.+-+|--|+..|.+.+.+.+ .+......++..++..|+|+++-|==.|+++++.|+...+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 356678888999999999999999999998766 34466789999999999999999999999999999987665
Q ss_pred HHHHHHHHHhcCC
Q 000941 84 EMTDKLCIKLLNG 96 (1215)
Q Consensus 84 ~lv~~L~~~~~~~ 96 (1215)
.+++.|+....+.
T Consensus 77 ~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 EVLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHHhCc
Confidence 4566666555443
No 167
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.98 E-value=0.33 Score=54.47 Aligned_cols=192 Identities=11% Similarity=0.218 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHH-HHHHHHHHHHHhCchhhhh
Q 000941 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV-GAFSVLRELVVVLPDCLAD 463 (1215)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~-~~~~~l~~L~~~~~~~l~~ 463 (1215)
.||.++++.+.+.++... .+.......+|+++..+..--+...+..|. ..++++..++...+..+.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~------------~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~ 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE------------DPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-------------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhccC------------CHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh
Confidence 466677777777776542 122234567788888777666655555554 5678888998887777777
Q ss_pred hhhhhhHHHHHh----hc-CCCCcchhHHHHHHHHHHHhccCCCCc--chh-hhhhhHHHHHHHhcCCchHHHHHHHHHH
Q 000941 464 HIGSLIPGIEKS----LN-DKSSTSNLKIEALTFTRLVLSSHSPPV--FHP-YIKALSSPVLAAVGERYYKVTAEALRVC 535 (1215)
Q Consensus 464 ~~~~lv~~l~~~----l~-d~~~~~~~~~~al~~l~~l~~~~~~~~--~~~-~l~~l~p~l~~~l~d~~~~v~~~al~~l 535 (1215)
.++.++..+..+ +. |-...|..|..-..+++.+...+.+.. +++ .+..++..+..++++....|...++.++
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l 189 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNIL 189 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 777776666543 32 334457889999999999988764321 223 5788999999999999999999999999
Q ss_pred HHHHHhccCCCc-CCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000941 536 GELVRVLRPSVE-GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1215)
Q Consensus 536 ~~l~~~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~ 589 (1215)
.+++..+..... ...+-+..|...++..++..+.+++.....+..+ ..+..+.
T Consensus 190 ~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 190 LELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHH
Confidence 999887644110 0123355677788888888887665556666554 3344444
No 168
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.95 E-value=0.068 Score=48.95 Aligned_cols=98 Identities=15% Similarity=0.277 Sum_probs=72.6
Q ss_pred hhhhhhHHHHHHHHhhhhcC----ChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000941 162 NLMSNDHERLLSALLPQLSA----NQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 162 ~~l~~~~~~ll~~ll~~l~~----~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1215)
..+.++.=.++..+-..+.+ .+..-|++++.+++.+.. .....+....+.++..|+..-..++.+..++++|..+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 34445555566666666655 234789999999999999 5666667777777777766533347889999999999
Q ss_pred Hhhhh-hhhccchhhhHHHHHHhh
Q 000941 238 SRAVG-YRFGPHLGDTVPVLIDYC 260 (1215)
Q Consensus 238 ~~~~~-~~~~~~l~~iip~ll~~~ 260 (1215)
.+..+ ..++|++++++-.+++..
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 99986 578899998888887765
No 169
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=5.7 Score=47.62 Aligned_cols=489 Identities=14% Similarity=0.135 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHhcc----CcccchhHHHHHHHHHHhhccChhhH--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHh-c
Q 000941 42 DLEVKLSNIVVQQLD----DVAGDVSGLAVKCLAPLVKKVSEPRV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIA-E 114 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~----D~~~~Vq~~A~~~l~~l~~~~~~~~~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~-~ 114 (1215)
....++++.....+. ..|+++-++...|+|..+.-+.-.-+ ...++-|+..+. .++.|..|+-++-.++. .
T Consensus 185 ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 185 NDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKK 262 (980)
T ss_pred hhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC
Confidence 344556665555554 34899999999999999853221111 233444444442 35678888888887775 3
Q ss_pred cCc-hhhHHHHHHhH--hHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHH
Q 000941 115 VTT-SSLAQSIHTSL--TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSV 191 (1215)
Q Consensus 115 ~~~-~~~~~~~~~~l--~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~ 191 (1215)
+.+ +++ +.++.+ +-+++..- +. +...-.+-.+-++.++..+|-.+..-+..+- +..++..+..
T Consensus 263 MkP~dKL--~lln~L~q~l~lfg~~-s~--dq~~d~df~e~vskLitg~gvel~~i~s~ln-------seld~~~kqn-- 328 (980)
T KOG2021|consen 263 MKPMDKL--ALLNMLNQTLELFGYH-SA--DQMDDLDFWESVSKLITGFGVELTIIISQLN-------SELDTLYKQN-- 328 (980)
T ss_pred CChhHHH--HHHHHHHHHHHHHhhh-cc--ccccCchHHHHHHHHHhhcceeeehhHhhhh-------hccCHHHHHH--
Confidence 333 111 111111 11221111 10 1112223334455566666655432222211 1112233332
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh---h---hhhccchhhhHHHHHHhhcccC-
Q 000941 192 SCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV---G---YRFGPHLGDTVPVLIDYCTSAS- 264 (1215)
Q Consensus 192 ~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~---~---~~~~~~l~~iip~ll~~~~~~~- 264 (1215)
++.. +...++++++.+.+..+ +..-..+..+....... + ..-.-++..++..+.+.+..++
T Consensus 329 -~l~~---------ll~~vpyllq~l~~e~d--dit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydem 396 (980)
T KOG2021|consen 329 -VLSI---------LLEIVPYLLQFLNNEFD--DITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEM 396 (980)
T ss_pred -HHHH---------HHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHH
Confidence 2211 22367778877766443 33334445444333221 1 2223356777766665543221
Q ss_pred ---C------Cc----HHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhh
Q 000941 265 ---E------ND----EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDES 331 (1215)
Q Consensus 265 ---~------~d----~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~ 331 (1215)
+ ++ .|+|.-.......++...|+-+...+.+.+...+...+
T Consensus 397 y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~-------------------------- 450 (980)
T KOG2021|consen 397 YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSK-------------------------- 450 (980)
T ss_pred hhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 1 11 23666666666777777775554444444443333221
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHhhCch---------hh-HHHHHHHHHHHHhh--hcccchhHHHHHHHHHHHHHH
Q 000941 332 ANEYTDDEDASWKVRRAAAKCLAALIVSRPE---------ML-SKLYEEACPKLIDR--FKEREENVKMDVFNTFIELVR 399 (1215)
Q Consensus 332 ~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~---------~l-~~~~~~i~p~Li~~--~~d~e~~Vr~~~~~~l~~l~~ 399 (1215)
..||..=+.|...+..+.++.++ .- ........+.++.. ...+++.|...-+ -.++|
T Consensus 451 --------e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfm---E~ivR 519 (980)
T KOG2021|consen 451 --------EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFM---ELIVR 519 (980)
T ss_pred --------cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHH---HHHHH
Confidence 23698889999999988877542 11 12333445555443 2556676665433 33344
Q ss_pred HhcccCCCcCCCCCCChhhHHHHHHHHHHHHHH--HHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhc
Q 000941 400 QTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN--RQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 477 (1215)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~--~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~ 477 (1215)
+..- ...=.+++|.++.+.. +.+..++.++|..+..++..++..+...+.++++.++..+...|.
T Consensus 520 Y~kf-------------f~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 520 YNKF-------------FSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHH-------------HhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3210 0000346788877765 346677889999999999999998777777888888877777774
Q ss_pred CCCCc------------chhHHHHHHHHHHHhcc--CCCCcchhhhhhhHH---------HHHHHhc-CC-chHHHH---
Q 000941 478 DKSST------------SNLKIEALTFTRLVLSS--HSPPVFHPYIKALSS---------PVLAAVG-ER-YYKVTA--- 529 (1215)
Q Consensus 478 d~~~~------------~~~~~~al~~l~~l~~~--~~~~~~~~~l~~l~p---------~l~~~l~-d~-~~~v~~--- 529 (1215)
.+.++ ..+. ....+|-++.. .+++.-..|...++. .+...+. |. .+.+..
T Consensus 587 ~~vtt~N~~s~~lt~fddqly--IfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~ 664 (980)
T KOG2021|consen 587 IKVTTINAQSDNLTIFDDQLY--IFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECH 664 (980)
T ss_pred CcCCCcCccccccccccccce--eeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 22110 0111 11222333221 112211223333322 2222332 22 232222
Q ss_pred HHHHHHHHHHHhccCCCcCC-CCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHH
Q 000941 530 EALRVCGELVRVLRPSVEGL-GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 608 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~-~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~ 608 (1215)
.++-+++.+.+.+....... .-.......+..+.++..+..-.....+|.+.-..++.++..+|..+-|+++.++..++
T Consensus 665 ~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL 744 (980)
T KOG2021|consen 665 HILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLL 744 (980)
T ss_pred HHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHH
Confidence 34445555655432211000 01111222333333333333222234577777789999999999988899999998887
Q ss_pred Hh
Q 000941 609 DR 610 (1215)
Q Consensus 609 ~~ 610 (1215)
..
T Consensus 745 ~s 746 (980)
T KOG2021|consen 745 SS 746 (980)
T ss_pred hc
Confidence 54
No 170
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=8.1 Score=48.99 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHHHHhhC--ch----hhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Q 000941 342 SWKVRRAAAKCLAALIVSR--PE----MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~--~~----~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1215)
|+..|.+-..+++.++... .+ ....+-..++..|.+|+.|-..-||..+++.|..++++...
T Consensus 325 s~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~------------ 392 (1251)
T KOG0414|consen 325 SYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI------------ 392 (1251)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC------------
Confidence 4689999988888777542 12 22233344677888899999999999999999999987432
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch
Q 000941 416 PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1215)
Q Consensus 416 ~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~ 459 (1215)
| ...+..++......+.|++.-||..|+.++..+...+|-
T Consensus 393 p----~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 393 P----LGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred C----ccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 2 233567788888889999989999999999999988874
No 171
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=0.23 Score=58.37 Aligned_cols=104 Identities=22% Similarity=0.197 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhH
Q 000941 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1215)
Q Consensus 3 ~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~ 82 (1215)
++.+.++|....+.|+.+||-.+.-|.. +.+.....|++...++...++.-+.|..+-||-+|+.||..+-..-.++.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~-l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee- 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILAL-LSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE- 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHH-HhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence 4678889999999999999999877644 44466778999999999999999999999999999999998864222222
Q ss_pred HHHHHHHHHHhc-CCCcchhhHHHHHH
Q 000941 83 VEMTDKLCIKLL-NGKDQHRDIASIAL 108 (1215)
Q Consensus 83 ~~lv~~L~~~~~-~~~~~~r~~a~~aL 108 (1215)
-+++..+...++ ++++++|..+...+
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 355555555665 46777887665543
No 172
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.72 E-value=2 Score=51.44 Aligned_cols=274 Identities=15% Similarity=0.152 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhH-H
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV-V 83 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~-~ 83 (1215)
-+..-|.++-+.|.-+|. ++..+ .....+.-..-..-+.++.+.. .++.=+..=.+.|..+.+.++...| .
T Consensus 240 el~~~l~k~l~~~~~~rp-~~~~l---~~~~ff~D~~~~aLrfLD~l~~----kdn~qKs~Flk~Ls~~ip~fp~rv~~~ 311 (700)
T KOG2137|consen 240 ELRESLKKLLNGDSAVRP-TLDLL---LSIPFFSDPGLKALRFLDDLPQ----KDNSQKSSFLKGLSKLIPTFPARVLFQ 311 (700)
T ss_pred HHHHHHHHHhcCCcccCc-chhhh---hcccccCCchhhhhhhcccccc----cCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 345567788899999999 43333 2222232111111122222221 3444455556668888888888654 6
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHH--HHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALK--TIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~--~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1215)
++++.|+..+.+..-. ...|- ..|++. .-...+..+++|.|...+.... ...+..-.++=+.-+.++..
T Consensus 312 kiLP~L~~el~n~~~v-----p~~LP~v~~i~~~---~s~~~~~~~~~p~l~pi~~~~~-~~~~~l~i~e~mdlL~~Kt~ 382 (700)
T KOG2137|consen 312 KILPTLVAELVNTKMV-----PIVLPLVLLIAEG---LSQNEFGPKMLPALKPIYSASD-PKQALLFILENMDLLKEKTP 382 (700)
T ss_pred hhhhHHHHHhcccccc-----ccccchhhhhhhc---cchhhhhhhhhHHHHHHhccCC-cccchhhHHhhHHHHHhhCC
Confidence 8888888887543211 11111 112211 1223456778888887766422 23333333333444444443
Q ss_pred hhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 000941 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1215)
Q Consensus 162 ~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1215)
.. ...+.+++.+...+++.+..++.++++.+..++.+++-... +.++|.+.+...+.. ...++..++-|++.+++.
T Consensus 383 ~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 383 PE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred hH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHHH
Confidence 31 24678899999999999999999999999999999986643 456666655543332 235667788899988865
Q ss_pred hhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHh
Q 000941 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
+. + ...++.+.|++ +..+ -.|+++.-.+++..+.++...+....-....++|.+..+.
T Consensus 460 lD-~-~~v~d~~lpi~-~~~~---~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 460 LD-K-AAVLDELLPIL-KCIK---TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HH-H-HHhHHHHHHHH-HHhc---CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 53 2 12344444444 4443 3678888888888888877665422223355566555443
No 173
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=7.1 Score=46.49 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCC--cchhhHHHHHHHHHHhccCchh
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK--DQHRDIASIALKTIIAEVTTSS 119 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~--~~~r~~a~~aL~~~i~~~~~~~ 119 (1215)
+..+.++..+.+-|.+.|+.-.+.|.+|+|.+-.+ +-.+.+-+.+...+.+++ +-+|.-|+++|-.+....|..-
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence 56777888888889999999999999999988643 222344444444454443 4478899999999988776410
Q ss_pred hHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
-...|.+ ++++.|.+. +..|...+...+..++.+..+...
T Consensus 184 ~~~~W~~----riv~LL~D~--~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 184 NPGEWAQ----RIVHLLDDQ--HMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred ChhhHHH----HHHHHhCcc--ccceeeehHHHHHHHHHcCCHHHh
Confidence 1112333 444545554 466666676667666666665443
No 174
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.32 E-value=8.8 Score=45.85 Aligned_cols=429 Identities=14% Similarity=0.172 Sum_probs=221.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~ 221 (1215)
-..|..+++-|.+.+..+.- ...+.+....-..+..+.+ ..|+.+...+..++..-... ....-..+...+.++.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHhcCC
Confidence 34567777777777777654 4455666666566655544 78999999998888765431 1111122333444443
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC----hh------hhcc
Q 000941 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC----PR------DISS 291 (1215)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~----~~------~~~~ 291 (1215)
.+ +....-++++.++.+ -|..+..+-..+.|++...+.. -....+.. .....+. +. .-..
T Consensus 80 ~~-~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~---~~~~~~~~-----r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 80 ND-DDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEP---SYQAARSA-----RRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred Cc-hhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHH---HHHHHHHH-----HHHhhccccccccccccccchhh
Confidence 32 334456777777776 3455555677788887776641 01001100 0000000 00 0123
Q ss_pred cHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHH
Q 000941 292 YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1215)
Q Consensus 292 ~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i 371 (1215)
.+.+++..+...++|..++-++ ++.++-|++ +
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e-------------------------~~i~~lv~~-----------------------i 181 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDE-------------------------DEISSLVDQ-----------------------I 181 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCH-------------------------HHHHHHHHH-----------------------H
Confidence 4566677777777765543211 011111111 1
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHH
Q 000941 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1215)
Q Consensus 372 ~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1215)
+.. ..+-..+..-..++..+.+++.+.. -| .+.++.++..+....+.. .....++.++.
T Consensus 182 ~~i---C~~Ts~~~di~~~L~vldaii~y~~------------iP----~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~ 240 (464)
T PF11864_consen 182 CTI---CKSTSSEDDIEACLSVLDAIITYGD------------IP----SESLSPCIEVLCSIVNSV--SLCKPSWRTMR 240 (464)
T ss_pred HHH---HhccCcHHHHHHHHHHHHHHHHcCc------------CC----hHHHHHHHHHHhhHhccc--ccchhHHHHHH
Confidence 111 0122222222456777777777532 13 344667777776665443 45666788888
Q ss_pred HHHHhCchhhhhhhhhhhHHHHHhh--cCCCC--cchhHHHHHHHHHHHhccCCCCcchh-hhhh--hHHHHHHHhcCCc
Q 000941 452 ELVVVLPDCLADHIGSLIPGIEKSL--NDKSS--TSNLKIEALTFTRLVLSSHSPPVFHP-YIKA--LSSPVLAAVGERY 524 (1215)
Q Consensus 452 ~L~~~~~~~l~~~~~~lv~~l~~~l--~d~~~--~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~--l~p~l~~~l~d~~ 524 (1215)
.|+..+- -...+..+...| .+... +.++.-.|+.+++.++-+.+...+.. .+.. ++|.+...++...
T Consensus 241 nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 241 NLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 8876432 233455555566 22221 12344578899999887765445443 2444 9999999998766
Q ss_pred hHHHHHHHHHHHHHH-HhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCC-------HHHHHHHHHHHHHHHHhc-c-C
Q 000941 525 YKVTAEALRVCGELV-RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD-------QEVKECAISCMGLVISTF-G-D 594 (1215)
Q Consensus 525 ~~v~~~al~~l~~l~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~-------~~Vr~~Ai~~lg~l~~~~-~-~ 594 (1215)
..+..+.+..+..++ +..+..- ...++...+ .++..+...+...+.. ..++. .+..+...++.+ . .
T Consensus 315 ~~v~~eIl~~i~~ll~~~~~~~l--~~~~W~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ie~L~~~~ 390 (464)
T PF11864_consen 315 PRVDYEILLLINRLLDGKYGREL--SEEDWDIIL-DIIEEIFDKIQPFDSWYSNSSSLDQLSS-NLHSLLSSIESLYEQH 390 (464)
T ss_pred CeehHHHHHHHHHHHhHhhhhhh--cccCchHHH-HHHHHHHhhccccccccccccchHHHHH-HHHHHHHHHHHHHhCC
Confidence 677777777777777 4433210 023444443 3333344443321111 12221 122222222222 1 1
Q ss_pred cccchhhhhHHHHHHhhccchhHHHHHHHHHHHH--cCCCCCchhHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 000941 595 NLGAELPACLPVLVDRMGNEITRLTAVKAFAVIA--ASPLHIDLTCVLEHVIAELTAFL-RKANRALRQATLGTMNS 668 (1215)
Q Consensus 595 ~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~--~s~~~~~~~~~l~~~l~~L~~~L-~~~~~~lr~~al~~L~~ 668 (1215)
.+......++.++.+....- .-..+...+-.-. .+|.+ ..|+..+...+-.|. +..+..+|..++..+..
T Consensus 391 ~~~g~~~~~~~f~~~~~~~l-p~s~~~~vl~~~~~~~~Ps~---~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 391 DFNGPKDKLFNFFERVHSYL-PDSSALLVLFYEERSCSPSN---PDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEE 463 (464)
T ss_pred CcCccHHHHHHHHHHHhccC-CHHHHHHHHHHHhcccCCCC---hHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhh
Confidence 23323456666666543221 1122333331111 12222 568888888888888 45566788888877653
No 175
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.29 E-value=0.07 Score=48.45 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=70.1
Q ss_pred hhcHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcCC
Q 000941 554 KPYVQPIYNAIMSRLTNQDQ--DQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASP 631 (1215)
Q Consensus 554 ~~~l~~l~~~l~~~l~~~d~--~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~ 631 (1215)
.+++-.++..+-+.+.+.+. +..-|.+++.++|.++...|..+...+++++..|...+..++.|..|+++...+...-
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 44555555555555554442 3456899999999999988888888888888888888999999999999999888542
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 000941 632 LHIDLTCVLEHVIAELTAF 650 (1215)
Q Consensus 632 ~~~~~~~~l~~~l~~L~~~ 650 (1215)
...++.+.+.+++..+.++
T Consensus 86 ~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 86 KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 2344566666665555443
No 176
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.23 E-value=8.4 Score=46.03 Aligned_cols=266 Identities=12% Similarity=0.178 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcc--hhHHHHHHHHHHHhc
Q 000941 422 QEVSKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTS--NLKIEALTFTRLVLS 498 (1215)
Q Consensus 422 ~~~p~i~~~l~~~L~~~~-~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~--~~~~~al~~l~~l~~ 498 (1215)
+.++.|-......+..+. ...|++++.++..++........ ..-..+...+.+...+. ..+.+++..|.
T Consensus 24 ~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~----~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT---- 95 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG----LMRAEFFRDISDPSNDDDFDLRLEALIALT---- 95 (464)
T ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHH----
Confidence 445666666666665553 35899999999999986533111 11112222233332222 35555555433
Q ss_pred cCCCCcchhhhhhhHHHHHHHhcCC---------------------------chHHHHHHHHHHHHHHHhccCCCcCCCC
Q 000941 499 SHSPPVFHPYIKALSSPVLAAVGER---------------------------YYKVTAEALRVCGELVRVLRPSVEGLGF 551 (1215)
Q Consensus 499 ~~~~~~~~~~l~~l~p~l~~~l~d~---------------------------~~~v~~~al~~l~~l~~~~~~~~~~~~~ 551 (1215)
.+|. .+..+...+.|.+..-+..- ..+....-+..+.++++.= ..
T Consensus 96 ~~Gr-di~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn-------~~ 167 (464)
T PF11864_consen 96 DNGR-DIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN-------FN 167 (464)
T ss_pred cCCc-CchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcC-------CC
Confidence 2332 33333444444444333211 1122233444444554431 11
Q ss_pred CC-hhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcC
Q 000941 552 DF-KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS 630 (1215)
Q Consensus 552 ~~-~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s 630 (1215)
.+ ...+..++..++..+..+.....+ +.++..+..++. +|..-...+..++.+|+...+.......+.+++.+++.+
T Consensus 168 ~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S 245 (464)
T PF11864_consen 168 YLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKS 245 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcC
Confidence 22 256777787777775544443444 677888887776 344334578888889888766666677788899999865
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHhCCC-CCcchHH--HHHHHhhhhcCCCChhhH
Q 000941 631 PLHIDLTCVLEHVIAELTAFLRK------ANRALRQATLGTMNSLVVAYGDK-IGASAYE--VIIVELSTLISDSDLHMT 701 (1215)
Q Consensus 631 ~~~~~~~~~l~~~l~~L~~~L~~------~~~~lr~~al~~L~~l~~~~~~~-~~~~~~~--~~l~~l~~~l~~~d~~~~ 701 (1215)
..+ ...+..|..+|.. .+..+-..|+..+..++...+.. ++.=.+. .+++.+...++.++..+.
T Consensus 246 ~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~ 318 (464)
T PF11864_consen 246 HLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVD 318 (464)
T ss_pred ccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeeh
Confidence 422 3556677777732 23344456778888887776432 2221122 377777766665555444
Q ss_pred HHHHHHHHHHh
Q 000941 702 ALALELCCTLM 712 (1215)
Q Consensus 702 ~~al~~l~~l~ 712 (1215)
--++..+..++
T Consensus 319 ~eIl~~i~~ll 329 (464)
T PF11864_consen 319 YEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 177
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=4.4 Score=43.48 Aligned_cols=270 Identities=17% Similarity=0.188 Sum_probs=135.4
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhcc--ChhhH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV--SEPRV 82 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~--~~~~~ 82 (1215)
-+..+++-+.++.|++|..|..-|...... .++.=.......++.+.+++.|+.+ -..|++.++.++.+- ...-+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 356788999999999999998777655444 2221112345677778888888887 677888888887542 22222
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-------HhHhHHHHhhhhccCCChhHHHHHH-HHHH
Q 000941 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-------TSLTPQLTKGITLKDMNTEIRCECL-DILC 154 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-------~~l~p~L~~~l~~~~~~~~v~~~al-~~L~ 154 (1215)
..++..++..+.++....-+..++.|.++-..-. ...... +.-+++++.+..+.+-+..+..+-+ -++.
T Consensus 81 ~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~---~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDD---EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhccCch---HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 3344445555555555556666666654432111 111000 1223344444443321211222211 1222
Q ss_pred HHHHH-hhhhhhhhH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-----HH---HHHHHHHHHHhhcC----
Q 000941 155 DVLHK-FGNLMSNDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-----LL---AKATIEVVRNLRSK---- 220 (1215)
Q Consensus 155 ~l~~~-~g~~l~~~~-~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-----~~---~~l~~~ll~~l~~~---- 220 (1215)
++-+. .|..+--+- --..+.+++ +.++.+.||+..+.+. +-.++-+. ++ ..++++++.-+-.+
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvagt--lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGT--LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHH--HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 22221 122221111 122334444 3346677887654332 11111111 11 23444444333211
Q ss_pred --------------------CCChHHHHHHHHHHHHHHhhhhhhhccchh-hhHHHHHHhhcccCCCcHHHHHHHHHHHH
Q 000941 221 --------------------GAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALE 279 (1215)
Q Consensus 221 --------------------~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1215)
..+..+|...++++-.++-+...| .++. .=++.+++-+... ++|+++|+.|.+..+
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilRElhk~-e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILRELHKW-EEDEDIREACEQVVQ 311 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 113467888888888777654322 1221 1133334333322 578999999988887
Q ss_pred HHHHhCh
Q 000941 280 SFLLRCP 286 (1215)
Q Consensus 280 ~l~~~~~ 286 (1215)
.+++.-|
T Consensus 312 ~Lv~~e~ 318 (353)
T KOG2973|consen 312 MLVRLEP 318 (353)
T ss_pred HHHhccc
Confidence 7776655
No 178
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.05 E-value=0.99 Score=52.08 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhccc--chhHHHHHHHHHHHHHH
Q 000941 341 ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER--EENVKMDVFNTFIELVR 399 (1215)
Q Consensus 341 ~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~--e~~Vr~~~~~~l~~l~~ 399 (1215)
..|.+|.-|+.++..+...+++....+...+...+.+.|.|. .......++.+|.++-.
T Consensus 310 nhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 310 NHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhh
Confidence 359999999999999999999877777778888888888665 46667777777766654
No 179
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.05 E-value=0.039 Score=37.56 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=23.2
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 000941 171 LLSALLPQLSANQASVRKKSVSCIASLASS 200 (1215)
Q Consensus 171 ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1215)
+++.+++.++|+++.||..|+.||+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467777888888888888888888888765
No 180
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.03 E-value=0.23 Score=58.79 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC----hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCch
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS----EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~----~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~ 118 (1215)
...++++.|+..+.=.+ +|...+.++..... +++...+++.|+..+...+.++|-.=..-+-..+..++.
T Consensus 290 ~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~- 363 (690)
T KOG1243|consen 290 IASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK- 363 (690)
T ss_pred HHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH-
Confidence 34567777777776333 33344455543211 234556788888877665544444333333334443332
Q ss_pred hhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Q 000941 119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLA 198 (1215)
Q Consensus 119 ~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~ 198 (1215)
+.+-+.|.|.+..|+.+. ++-+|+..+..+..++...++. .-..++++.+-..-.|++..+|.....|+|.++
T Consensus 364 ---~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 364 ---QILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred ---HhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccc
Confidence 234567899999999987 5889999999999999998886 123445555555445777899999999999999
Q ss_pred hhcCHHHHHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHH
Q 000941 199 SSLSDDLLAK-ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQA 277 (1215)
Q Consensus 199 ~~~~~~~~~~-l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~ 277 (1215)
.++....-+. +.......++++-. ..|...+..+.+.....+. ..--.+|.|.+.-..- |.+..+|+.+..+
T Consensus 437 ~~l~~~~R~~vL~~aftralkdpf~--paR~a~v~~l~at~~~~~~--~~va~kIlp~l~pl~v---d~e~~vr~~a~~~ 509 (690)
T KOG1243|consen 437 PHLAASVRKRVLASAFTRALKDPFV--PARKAGVLALAATQEYFDQ--SEVANKILPSLVPLTV---DPEKTVRDTAEKA 509 (690)
T ss_pred cccchhhhccccchhhhhhhcCCCC--CchhhhhHHHhhcccccch--hhhhhhcccccccccc---CcccchhhHHHHH
Confidence 9875543222 23334445666654 3566666665554443221 0111223333322222 4667789999888
Q ss_pred HHHHHHhCh
Q 000941 278 LESFLLRCP 286 (1215)
Q Consensus 278 l~~l~~~~~ 286 (1215)
+..+....+
T Consensus 510 i~~fl~kl~ 518 (690)
T KOG1243|consen 510 IRQFLEKLE 518 (690)
T ss_pred HHHHHhhhh
Confidence 877665544
No 181
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.99 E-value=0.57 Score=51.71 Aligned_cols=152 Identities=14% Similarity=0.223 Sum_probs=106.2
Q ss_pred chhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCc---chh--hhhhhHHHHHHHhc--------CCc
Q 000941 458 PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV---FHP--YIKALSSPVLAAVG--------ERY 524 (1215)
Q Consensus 458 ~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~---~~~--~l~~l~p~l~~~l~--------d~~ 524 (1215)
.+.++.|++-++|.++..+.|.. +.+|..++.++..++....+.. +.. ..+-+.+++..++- +..
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~--~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYS--PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCC--HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 44578899999999999998864 7899999999999998776666 544 35566666666665 556
Q ss_pred hHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHH-HHHHHHHhhccCC--CHHHHHHHHHHHHHHHHhccCcccchhh
Q 000941 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI-YNAIMSRLTNQDQ--DQEVKECAISCMGLVISTFGDNLGAELP 601 (1215)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l-~~~l~~~l~~~d~--~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~ 601 (1215)
..+...++.++-.++....... +......+.++ .+.+++.+.-... ...++...+..+..++..+|-....+++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~---~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ 264 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDD---SNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ 264 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCC---cccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6788888888888877642211 22233333333 3335555432222 4778888888888888888877777888
Q ss_pred hhHHHHHHhhccc
Q 000941 602 ACLPVLVDRMGNE 614 (1215)
Q Consensus 602 ~~l~~L~~~L~~e 614 (1215)
++++++.+-++|.
T Consensus 265 rii~~l~~~l~np 277 (282)
T PF10521_consen 265 RIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhcCC
Confidence 8888887776664
No 182
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=11 Score=44.87 Aligned_cols=302 Identities=13% Similarity=0.152 Sum_probs=167.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhcc-
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP- 247 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~- 247 (1215)
..+...+...|.+.++.-.--|+.|++.++..--.+-|..-++ +.|.+++..+-+++.+.-|+-.+.+..|+-+.+
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~ 186 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPG 186 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccChh
Confidence 4555666677777777777788889888875433333333333 444555544467778888899999988876555
Q ss_pred -chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCccccccccc
Q 000941 248 -HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEE 326 (1215)
Q Consensus 248 -~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~ 326 (1215)
+...|+. .+. |.+-.+--++...++.++.+.|+....-++..+..+.+...-- .+ + -
T Consensus 187 ~W~~riv~----LL~---D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~-~t-~-------------~ 244 (938)
T KOG1077|consen 187 EWAQRIVH----LLD---DQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVV-GT-S-------------L 244 (938)
T ss_pred hHHHHHHH----HhC---ccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhc-cc-c-------------h
Confidence 5555544 343 3444555667778888999999888777777777666554300 00 0 0
Q ss_pred chhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCC
Q 000941 327 EEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTK 406 (1215)
Q Consensus 327 ~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~ 406 (1215)
.| ...|. -...|- ..++++ ++..+| ..++..+|....+++..++..+....+
T Consensus 245 -qd--YTyy~--vP~PWL----~vKl~r-lLq~~p------------------~~~D~~~r~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 245 -QD--YTYYF--VPAPWL----QVKLLR-LLQIYP------------------TPEDPSTRARLNEVLERILNKAQEPPK 296 (938)
T ss_pred -hh--ceeec--CCChHH----HHHHHH-HHHhCC------------------CCCCchHHHHHHHHHHHHHhccccCcc
Confidence 00 00010 123452 222232 222233 122233333333333333333221100
Q ss_pred CcC---CC---------------CCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch--hhhhhhh
Q 000941 407 GQI---DN---------------NELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD--CLADHIG 466 (1215)
Q Consensus 407 ~~~---~~---------------~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~--~l~~~~~ 466 (1215)
.+. .- .+.. .+.+..-+..+.+.+.+++...|--++.-+..|+.+-+. .+..|.
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e-----~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~- 370 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSE-----PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQ- 370 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHH-
Confidence 000 00 0001 123455566777778888888887777777777765332 233354
Q ss_pred hhhHHHHHhhc-CCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000941 467 SLIPGIEKSLN-DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1215)
Q Consensus 467 ~lv~~l~~~l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1215)
..+...|+ ++ +.++|..++.+|-.++... ....|+..+++++...+|.++++-.--+.-+.+.
T Consensus 371 ---d~Ii~sLkter--DvSirrravDLLY~mcD~~-------Nak~IV~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 371 ---DTIINSLKTER--DVSIRRRAVDLLYAMCDVS-------NAKQIVAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred ---HHHHHHhcccc--chHHHHHHHHHHHHHhchh-------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 34445565 33 2578889999999887642 2567788888888776676666554444444443
No 183
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.79 E-value=0.77 Score=50.70 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=114.3
Q ss_pred HHHHHHHHHHh-ccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh----hh--hHHHHHHHH
Q 000941 103 IASIALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM----SN--DHERLLSAL 175 (1215)
Q Consensus 103 ~a~~aL~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l----~~--~~~~ll~~l 175 (1215)
.++..+.-++. .... ......+..++|.++..+.+. +++++..++.+|..++.+.+... .. ..+.+.+.+
T Consensus 95 ~~~~~l~w~v~~~~~~-~~i~~~~~liiP~iL~llDD~--~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDR-PWISQHWPLIIPPILNLLDDY--SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred ccHHHHHHHHHhcCCc-chHHHhhhHHHhhHHHHhcCC--CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 34456666666 5444 455677899999999988876 58999999999999999876544 22 355666666
Q ss_pred hhhhc--------CChHHHHHHHHHHHHHHHhhcC-------HHHHHHHH-HHHHHHhhcCCC--ChHHHHHHHHHHHHH
Q 000941 176 LPQLS--------ANQASVRKKSVSCIASLASSLS-------DDLLAKAT-IEVVRNLRSKGA--KPEMIRTNIQMVGAL 237 (1215)
Q Consensus 176 l~~l~--------~~~~~vrk~a~~~l~~l~~~~~-------~~~~~~l~-~~ll~~l~~~~~--~~~~~~~~i~~l~~l 237 (1215)
.+++. +++..+=..|..|+-.+..... ...+.+++ +.+++.+..... ....+..+++.+..+
T Consensus 172 ~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~ 251 (282)
T PF10521_consen 172 FPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPI 251 (282)
T ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHH
Confidence 66665 4455677888999988866421 11244444 337777655443 246788899999999
Q ss_pred HhhhhhhhccchhhhHHHHHHhhcc
Q 000941 238 SRAVGYRFGPHLGDTVPVLIDYCTS 262 (1215)
Q Consensus 238 ~~~~~~~~~~~l~~iip~ll~~~~~ 262 (1215)
.+..|.....|+..++|.+.+.+++
T Consensus 252 i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 252 IDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998763
No 184
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.78 E-value=5.1 Score=47.15 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHhhccChhhHHHHHHH-HHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhc
Q 000941 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDK-LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL 138 (1215)
Q Consensus 61 ~Vq~~A~~~l~~l~~~~~~~~~~~lv~~-L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~ 138 (1215)
.-|-.|.++||.+..+++...+..+... |...+.+...-.|-++++.|...+.......... ....+.++|...|++
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~-~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSP-PPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCc-cHHHHHHHHHHHHcC
Confidence 4577999999999999998888888885 7777777777778899999888776554310000 024455566665653
No 185
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.37 Score=51.44 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1215)
..++...+.|.+++|..+..++..+..|...++..+.+.+..++..+.+.+++.. +.+.-.|+.+++.++..... .+
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR--S~VsraA~~t~~difs~ln~-~i 164 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR--SAVSRAACMTLADIFSSLNN-SI 164 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445566778888999999999999999999999999999999999999988764 66777888888888876542 22
Q ss_pred hhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 000941 506 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 585 (1215)
Q Consensus 506 ~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~l 585 (1215)
...++.++-.++..-.+...=|+..|-.++..++....| . .+++.+...++ .....+|..+..|.
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------~----~~L~~L~~~~~--~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------Q----KLLRKLIPILQ--HSNPRVRAKAALCF 229 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------H----HHHHHHHHHHh--hhchhhhhhhhccc
Confidence 223444444444433333334778888888888876544 1 23444444444 33567787777776
Q ss_pred HHHHHhcc
Q 000941 586 GLVISTFG 593 (1215)
Q Consensus 586 g~l~~~~~ 593 (1215)
..++..+|
T Consensus 230 ~~~v~rl~ 237 (334)
T KOG2933|consen 230 SRCVIRLG 237 (334)
T ss_pred cccceecc
Confidence 66555554
No 186
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.69 E-value=0.33 Score=48.26 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=50.2
Q ss_pred hhhhhh-hhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000941 462 ADHIGS-LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1215)
Q Consensus 462 ~~~~~~-lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1215)
.++.+. .+..+...|+|++- +.-+..+...+..++++.+... -||+++++|.++..+.......+..-+.-++.++.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444333 46777778887753 3344466777777777665544 78999999999999875544555555555555443
No 187
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=12 Score=43.84 Aligned_cols=357 Identities=15% Similarity=0.116 Sum_probs=169.5
Q ss_pred hhhhHHHHHHHhccccCCCCh---HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCC
Q 000941 21 RYMATSDLLNELNKESFKADA---DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK 97 (1215)
Q Consensus 21 R~mAl~dL~~~l~~~~~~~~~---~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~ 97 (1215)
+||| ..+.+.++.+=..+++ .+.+.-.-..++.+.|..+-++-+=.-+++.++-.++ .|..-+..++....+..
T Consensus 35 ~Faa-qTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~ 111 (559)
T KOG2081|consen 35 LFAA-QTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH 111 (559)
T ss_pred HHHH-HHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC
Confidence 4554 5566666553222333 3444444455566666666667666666777766555 34444444444433222
Q ss_pred cchhhHHHHHHHHHHhccCch--------------hh---HHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHh
Q 000941 98 DQHRDIASIALKTIIAEVTTS--------------SL---AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1215)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~--------------~~---~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~ 160 (1215)
+. ..++..+..-+|.. ++ -.+....++..+...+++.+.+ + =+.+..+++++
T Consensus 112 ~~-----~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~-~-----~~~l~~Vl~~l 180 (559)
T KOG2081|consen 112 PA-----VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLK-S-----SDDLEQVLRCL 180 (559)
T ss_pred cc-----HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-h-----hhHHHHHHHHH
Confidence 11 23344444433320 00 0111233445555566654311 1 23345555555
Q ss_pred hhhhh------hh---HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HH-------HHHHHHHHHhhcC
Q 000941 161 GNLMS------ND---HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LA-------KATIEVVRNLRSK 220 (1215)
Q Consensus 161 g~~l~------~~---~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~-------~l~~~ll~~l~~~ 220 (1215)
|.-+. .+ .-.++...+..+++ ...-..|..|+..+.....+.- +. .+++...+.-..
T Consensus 181 ~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~- 257 (559)
T KOG2081|consen 181 GSWLRLHVFPPDQVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMA- 257 (559)
T ss_pred hhhhhhccCCHHHHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhc-
Confidence 55332 11 11345556666653 2344455566555443321110 11 112222222111
Q ss_pred CCChHHHHHHHHHHHHHHhhhhh---hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh-----Ch---hhh
Q 000941 221 GAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR-----CP---RDI 289 (1215)
Q Consensus 221 ~~~~~~~~~~i~~l~~l~~~~~~---~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~-----~~---~~~ 289 (1215)
..+.+.++.+...|..++++--. .-..+.-.++..++-..+ ..+.|+-+..+..+-++-+. .+ .-+
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~---h~~~evie~SF~fW~~lse~l~~~~~~~~~~~f 334 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG---HNDTEVIEASFNFWYSLSEELTLTDDDEALGIF 334 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc---CCchhhhhhhHHhhhhhHHHHhccccHHHHHHh
Confidence 22234555555555555543210 001122234444444444 34567888877776665432 11 257
Q ss_pred cccHHHHHHHHHHHhccCCCCCCCCCCCccccccc-----c---------cchhhhcCCCC--CCCCccHHHHHHHHHHH
Q 000941 290 SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYE-----E---------EEEDESANEYT--DDEDASWKVRRAAAKCL 353 (1215)
Q Consensus 290 ~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~-----~---------~~d~~~~~~~~--dd~d~swkvR~~Aa~~L 353 (1215)
+||..+++..+.+-++|.| |.++.-++.++..+. | ++|...-.-|. ++...+|..=+||...+
T Consensus 335 rpy~~rLvs~l~~h~qlp~-~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l 413 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPP-DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFIL 413 (559)
T ss_pred HHHHHHHHHHHHHHccCCC-ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 8999999999999999988 443322221110000 0 00110001111 23567899999999999
Q ss_pred HHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000941 354 AALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 354 ~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
..++.+.+..-.++...++..+. ++-+..+ +|...+-.++.+-+-
T Consensus 414 ~~~~~~~~~~e~~i~pevl~~i~-nlp~Q~~-~~~ts~ll~g~~~ew 458 (559)
T KOG2081|consen 414 RAVAKNVSPEENTIMPEVLKLIC-NLPEQAP-LRYTSILLLGEYSEW 458 (559)
T ss_pred HHHhccCCccccchHHHHHHHHh-CCccchh-HHHHHHHHHHHHHHH
Confidence 99998876333333334443332 2222223 776666555555443
No 188
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=1.1 Score=51.28 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=78.0
Q ss_pred ccCCccchhhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHH-hccCC
Q 000941 936 CESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLM-LIKDQ 1014 (1215)
Q Consensus 936 ~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~-~l~D~ 1014 (1215)
..+.++++|++|.-+||-.|+-++..+...++-+..+-++.+|+-+..++.-.+...+. +.++ .+|. ...|+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~-diL~~L~~D~ 633 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVAT-DILEALMYDT 633 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHH-HHHHHHhhCc
Confidence 34566889999999999999988776655555455688999998888888877776653 1222 2333 45588
Q ss_pred ChHHHHHHHHHHHHHH-hcCcccccchhhhhhHHHHHH
Q 000941 1015 DRHVRRAAVLALSTFA-HNKPNLIKGLLPELLPLLYDQ 1051 (1215)
Q Consensus 1015 d~~Vr~~a~~~L~~~~-~~~p~~i~~~l~~llp~l~~~ 1051 (1215)
+.-|||.|+-+++... +..|.+ .|.+..+...+-+-
T Consensus 634 ~dfVRQ~AmIa~~mIl~Q~n~~L-np~v~~I~k~f~~v 670 (926)
T COG5116 634 NDFVRQSAMIAVGMILMQCNPEL-NPNVKRIIKKFNRV 670 (926)
T ss_pred HHHHHHHHHHHHHHHHhhcCccc-ChhHHHHHHHHHHH
Confidence 8999999999999866 555655 66666666655443
No 189
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=2.5 Score=46.62 Aligned_cols=181 Identities=18% Similarity=0.127 Sum_probs=111.8
Q ss_pred cchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHH
Q 000941 98 DQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSAL 175 (1215)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~ll~~l 175 (1215)
.+.+..+..-|...++.+.. +...+ -..++.++..+++. +..+|..|..+++....+.+..-... ...-++.+
T Consensus 97 le~ke~ald~Le~lve~iDn---Andl~~~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDN---ANDLISLGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhh---HHhHhhccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34566777777777776643 22222 12344555566654 68999999999999999988753321 12256677
Q ss_pred hhhhcCChH-HHHHHHHHHHHHHHhhcCHHH--HHHH--HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh
Q 000941 176 LPQLSANQA-SVRKKSVSCIASLASSLSDDL--LAKA--TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG 250 (1215)
Q Consensus 176 l~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~--~~~l--~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~ 250 (1215)
+..++++.+ .+|.+|+.|++++.......+ |..+ ...+...+++++.....++.++.+++.+.......-.-.-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 777776555 799999999999998765542 2211 33455566665444567778888999888765422111111
Q ss_pred hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 251 DTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 251 ~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
..++..+..+.. ..+.++++.++.+.-.++...
T Consensus 252 ~~f~~~~~~l~~--~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 252 LGFQRVLENLIS--SLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhhHHHHHHhh--ccchhhhHHHHHHHHHHHHHH
Confidence 122332222221 356788888888776665543
No 190
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.30 E-value=2.6 Score=50.59 Aligned_cols=241 Identities=15% Similarity=0.156 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHH
Q 000941 485 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564 (1215)
Q Consensus 485 ~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l 564 (1215)
-|..=+..|..++.+.++.. ...+++|.++..+.+.. ..-..+-.+-.+.+ +..-..|...++|.+
T Consensus 289 qKs~Flk~Ls~~ip~fp~rv---~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~---------~~s~~~~~~~~~p~l 354 (700)
T KOG2137|consen 289 QKSSFLKGLSKLIPTFPARV---LFQKILPTLVAELVNTK--MVPIVLPLVLLIAE---------GLSQNEFGPKMLPAL 354 (700)
T ss_pred HHHHHHHHHHHhhccCCHHH---HHHhhhhHHHHHhcccc--ccccccchhhhhhh---------ccchhhhhhhhhHHH
Confidence 34444455555555433221 46788888887775431 11111222222222 223445666777777
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchh--HHHHHHHHHHHHcCCCCCchhHHHHH
Q 000941 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEIT--RLTAVKAFAVIAASPLHIDLTCVLEH 642 (1215)
Q Consensus 565 ~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~--r~~a~~al~~i~~s~~~~~~~~~l~~ 642 (1215)
...+...+.. .+.---+.-+-.+...+.. ......++|+|...++++++ +..+++.+..++.. .|+.-.-..
T Consensus 355 ~pi~~~~~~~-~~~l~i~e~mdlL~~Kt~~--e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~---iD~~~vk~~ 428 (700)
T KOG2137|consen 355 KPIYSASDPK-QALLFILENMDLLKEKTPP--EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES---IDVPFVKQA 428 (700)
T ss_pred HHHhccCCcc-cchhhHHhhHHHHHhhCCh--HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh---ccHHHHHHH
Confidence 7777643321 1121112222223333322 12678899999999988764 45678888888754 333333345
Q ss_pred HHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhh---hcCCCChhhHHHHHHHHHHHhhcccCC
Q 000941 643 VIAELTAFL-RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELST---LISDSDLHMTALALELCCTLMADKRSS 718 (1215)
Q Consensus 643 ~l~~L~~~L-~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~---~l~~~d~~~~~~al~~l~~l~~~~~~~ 718 (1215)
++|.|...- ...+-.++.+++.|++.++.+... -.++.++.+ -+...|+.+.--.+.+...+.-. .
T Consensus 429 ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~-------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~---~ 498 (700)
T KOG2137|consen 429 ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK-------AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI---I 498 (700)
T ss_pred HHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh---c
Confidence 777776653 456788999999999999966432 223333333 33456666655555555554442 3
Q ss_pred CchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHH
Q 000941 719 PNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFA 755 (1215)
Q Consensus 719 p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~ 755 (1215)
+.-.....++++|.++-+...+.+.+..+.-....+.
T Consensus 499 ~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~ 535 (700)
T KOG2137|consen 499 YSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIR 535 (700)
T ss_pred ccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHH
Confidence 3312346788999999888766655554433333333
No 191
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=1.3 Score=47.36 Aligned_cols=163 Identities=16% Similarity=0.210 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 422 (1215)
|.+.=-+...+..+...+++.+.+.++.++..+++.++.....|-..++.+++.++..... .+.+
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---------------~i~~ 166 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---------------SIDQ 166 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 7777778888888888899999999999999999888887788888888899999876531 3333
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHH-HHHHHHhccCC
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL-TFTRLVLSSHS 501 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al-~~l~~l~~~~~ 501 (1215)
.+..++..+...-...+.=+|..+-.+|..++....++ .+++.+..++++.+ ++++..+. .+...+.+-.-
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc--hhhhhhhhccccccceeccc
Confidence 44444444433333333347888999999998765332 23444555555544 44444333 33333322211
Q ss_pred CCcchhhhhhhHHHHHHHhcCCchHHH
Q 000941 502 PPVFHPYIKALSSPVLAAVGERYYKVT 528 (1215)
Q Consensus 502 ~~~~~~~l~~l~p~l~~~l~d~~~~v~ 528 (1215)
+....+++..+.+.+..-..|+.+..+
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~ 265 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELR 265 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccc
Confidence 222334566666777666666655433
No 192
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.15 E-value=0.48 Score=56.23 Aligned_cols=247 Identities=16% Similarity=0.166 Sum_probs=139.4
Q ss_pred hcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHH
Q 000941 435 LREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1215)
Q Consensus 435 L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p 514 (1215)
+.-++...|+.-++.|..-...+|..+ +...++|.+...+.=.. ++-.++..+++-..--.-.+|-..++|
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i--~~~kvlp~Ll~~~~~g~-------a~~~~ltpl~k~~k~ld~~eyq~~i~p 333 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEI--IASKVLPILLAALEFGD-------AASDFLTPLFKLGKDLDEEEYQVRIIP 333 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhhccc-------cchhhhhHHHHhhhhccccccccchhh
Confidence 333444556555555555444444332 33445566655543111 111222222211111111237788999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccC
Q 000941 515 PVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 594 (1215)
Q Consensus 515 ~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~ 594 (1215)
.+++.+..++..+|.--|.-+.+++..+.+ ..+-.+++|.+...+. |++..+|+.++.++..++..++.
T Consensus 334 ~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~---------~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLLLLQYIEKYIDHLTK---------QILNDQIFPHVALGFL--DTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred hHHHHhcCcchHHHHHHHHhHHHHhhhcCH---------HhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHHHhhhch
Confidence 999999877767776666666666655532 2345578888887765 77899999999999999988876
Q ss_pred c-ccchhhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000941 595 N-LGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEH--VIAELTAFLRKANRALRQATLGTMNSL 669 (1215)
Q Consensus 595 ~-l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~--~l~~L~~~L~~~~~~lr~~al~~L~~l 669 (1215)
. +...+ +..|.+.-.+ ...|.++.-++|.|+.. +.+...+ +.......++++-..-|.+++..+...
T Consensus 403 ~~Ln~El---lr~~ar~q~d~~~~irtntticlgki~~~-----l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 403 RNLNGEL---LRYLARLQPDEHGGIRTNTTICLGKIAPH-----LAASVRKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hhhcHHH---HHHHHhhCccccCcccccceeeecccccc-----cchhhhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 3 33322 3333222122 23455556666666521 1111111 111222334455566788877776654
Q ss_pred HHHhCCCCC-cchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhh
Q 000941 670 VVAYGDKIG-ASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 713 (1215)
Q Consensus 670 ~~~~~~~~~-~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1215)
.+- ++ ......+++.+.++.-+++..++..++..+.....
T Consensus 475 ~~~----~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 475 QEY----FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccc----cchhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 322 22 23345677777888888899899888888877665
No 193
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=10 Score=40.91 Aligned_cols=203 Identities=15% Similarity=0.180 Sum_probs=118.8
Q ss_pred HhccCcccchhHHHHHHHHHHhh-ccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCch---hhHHHHHHhH
Q 000941 53 QQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS---SLAQSIHTSL 128 (1215)
Q Consensus 53 ~~L~D~~~~Vq~~A~~~l~~l~~-~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~---~~~~~~~~~l 128 (1215)
..++..+++--...+.|+..|.+ +.+..-.+.+++.|-..+..++..+...++..+..+++++... +...-+-..+
T Consensus 50 gfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaei 129 (524)
T KOG4413|consen 50 GFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEI 129 (524)
T ss_pred ccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhH
Confidence 33444556666678899998886 3444555677777777776666667778888888888888752 2222233568
Q ss_pred hHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHH-HHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHH
Q 000941 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLL-SALLPQLSA-NQASVRKKSVSCIASLASSLSDDL 205 (1215)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll-~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1215)
+|.++..+... +.+|...|++.+..+. .|...+.. +-..++ +.-+..+.. -+.-+|-|....+-.+....+...
T Consensus 130 lklildcIgge--ddeVAkAAiesikria-lfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 130 LKLILDCIGGE--DDEVAKAAIESIKRIA-LFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred HHHHHHHHcCC--cHHHHHHHHHHHHHHH-hcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 89999988775 5788888888877653 22222211 000000 001111111 122466777777666665444332
Q ss_pred ----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccchhhhHHHHHHhh
Q 000941 206 ----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYC 260 (1215)
Q Consensus 206 ----~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~ 260 (1215)
-..++..+...++...+ .-++...++.+..+++.- |..|.+. ..++..+.+.+
T Consensus 207 neckkSGLldlLeaElkGteD-tLVianciElvteLaeteHgreflaQ-eglIdlicnII 264 (524)
T KOG4413|consen 207 NECKKSGLLDLLEAELKGTED-TLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNII 264 (524)
T ss_pred hHhhhhhHHHHHHHHhcCCcc-eeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHh
Confidence 23466667777765443 356778889999988864 3444442 22344444433
No 194
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=3.7 Score=45.32 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=105.3
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH----HHHHHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV----EMTDKL 89 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~----~lv~~L 89 (1215)
.++|.+-|.-|+..|.-.+..-....|=-. -.-...++..+++++.+||..|..+||..+.-.|.-+.. .-..+|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 457777788888887666543100000011 123445566999999999999999999999755543321 235667
Q ss_pred HHHhcCC-CcchhhHHHHHHHHHHhccCchhhHHHHHHh-HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh
Q 000941 90 CIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTS-LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND 167 (1215)
Q Consensus 90 ~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~-l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~ 167 (1215)
+..+.++ +...|.-+..|+..+|.+.++ .+....+. =+-.|...+++++.+...+..++..++.++..--..-...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~--g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKP--GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcH--HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7766644 445678888899988877664 11111100 0123445556543357778888888888876543322111
Q ss_pred HHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhh
Q 000941 168 HERLLSALLPQLS-ANQASVRKKSVSCIASLASS 200 (1215)
Q Consensus 168 ~~~ll~~ll~~l~-~~~~~vrk~a~~~l~~l~~~ 200 (1215)
-+...+..+..+. .-+..++..++.++-.+...
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 1222222222222 22346777777776655543
No 195
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.37 Score=56.50 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=109.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc
Q 000941 514 SPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1215)
Q Consensus 514 p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~ 593 (1215)
|.+..+++-+++.|+..|..++-++.-..+|.. ...+....++.=+..+.+.|. |.-+.||..|+..+..+...+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~--~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDL--HAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCc--cHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHH
Confidence 455667778889999999988877765444421 012334444544455566665 6678999999998888877776
Q ss_pred Ccccc-hhhhhHHHHHHhhccc---hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000941 594 DNLGA-ELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSL 669 (1215)
Q Consensus 594 ~~l~~-~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l 669 (1215)
..+.+ .+..++.-+.+.+..+ .+|..++.++..++..|.. .+.+..++|.|...+.++...+|.+....|..|
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 65554 6667777777766554 4788899999999865544 678889999999999999999999999988876
Q ss_pred H
Q 000941 670 V 670 (1215)
Q Consensus 670 ~ 670 (1215)
-
T Consensus 330 k 330 (1005)
T KOG1949|consen 330 K 330 (1005)
T ss_pred H
Confidence 4
No 196
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.98 E-value=1.4 Score=53.06 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=89.3
Q ss_pred hHHHHHHHHhhhhcCC--hHHHHHHHHHHH---HHHHhhcCHHHHHHHHHHHHHHhhcC----------CCChHHHHHHH
Q 000941 167 DHERLLSALLPQLSAN--QASVRKKSVSCI---ASLASSLSDDLLAKATIEVVRNLRSK----------GAKPEMIRTNI 231 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~--~~~vrk~a~~~l---~~l~~~~~~~~~~~l~~~ll~~l~~~----------~~~~~~~~~~i 231 (1215)
..+.+++++...+.++ ...+|..+++-+ ......++...+..+-+.+...+..- ......|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 5577888888888877 567888888999 88888888888777766666554321 12346788899
Q ss_pred HHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
+++|.+++..|.-|..- -.++..+++.+. ++++|+|-+.-+|+.+|+..++
T Consensus 396 e~lG~L~~~~p~l~~~d-~~li~~LF~sL~---~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKD-LSLIEFLFDSLE---DESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHccCccccccc-HHHHHHHHHHhh---CcchHHHHHHHHHHHHHHHHHh
Confidence 99999999999876444 346677777775 6789999999999999987765
No 197
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=93.82 E-value=2.2 Score=47.04 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHh
Q 000941 38 KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKL 93 (1215)
Q Consensus 38 ~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~ 93 (1215)
+.=++....-++.=+.+.+|.+-.||.+|++-|..+... +.+..+.+.|.+++
T Consensus 53 k~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 53 KHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLL 105 (460)
T ss_pred hhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHH
Confidence 333444556666777777888888999999988777653 55566666666555
No 198
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=93.81 E-value=23 Score=43.95 Aligned_cols=99 Identities=9% Similarity=0.071 Sum_probs=72.6
Q ss_pred CCcchhhhhHHHHHHHhccccCC-------CChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHH
Q 000941 16 KDKDFRYMATSDLLNELNKESFK-------ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~-------~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~ 88 (1215)
.|=..|..|+--++|.+.+.|.. .++.. -|...++.++-..++..+-+-+.|++.+++.--+..|+++++.
T Consensus 50 ~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v--~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~D 127 (947)
T COG5657 50 NSMSLRWAALIQFKNYIDKHWREENGNSILPDENV--LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPD 127 (947)
T ss_pred cchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch--HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHH
Confidence 45567999999999999876532 23222 6677788887777777777888899999988778899999999
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhccC
Q 000941 89 LCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1215)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~ 116 (1215)
|+..+++++-........++..+++...
T Consensus 128 L~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 128 LLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 9999977544444445556666665444
No 199
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.72 E-value=4.1 Score=42.81 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=102.2
Q ss_pred HHHHHHhhhc--ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHH
Q 000941 371 ACPKLIDRFK--EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFS 448 (1215)
Q Consensus 371 i~p~Li~~~~--d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~ 448 (1215)
.+|.|+..+. ++++.||.++..+|+.+.. |.+++.+.+..+++...++..|.-
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-------------------------~~~~~~l~k~~~dp~~~v~ETc~l 122 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------------------------PESLEILTKYIKDPCKEVRETCEL 122 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-------------------------hhhHHHHHHHhcCCccccchHHHH
Confidence 4556666553 4568999999999988751 233445555555666667777666
Q ss_pred HHHHHHHhCchh----hhhhh------h---hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHH
Q 000941 449 VLRELVVVLPDC----LADHI------G---SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSP 515 (1215)
Q Consensus 449 ~l~~L~~~~~~~----l~~~~------~---~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~ 515 (1215)
++..+-...... -.++. + .-+..+...+.|.+....-|..++-.| ++++. +.-+-.
T Consensus 123 Ai~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~L----Rn~g~-------EeaI~a 191 (289)
T KOG0567|consen 123 AIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYL----RNIGT-------EEAINA 191 (289)
T ss_pred HHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHh----hccCc-------HHHHHH
Confidence 666554321110 00010 0 001222222222221111121111111 11111 223445
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCc
Q 000941 516 VLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDN 595 (1215)
Q Consensus 516 l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~ 595 (1215)
+...+.+...-.+-++-.++|++-. +.-+|.+.+.|......+.||..|..+||.++.
T Consensus 192 l~~~l~~~SalfrhEvAfVfGQl~s-----------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 192 LIDGLADDSALFRHEVAFVFGQLQS-----------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred HHHhcccchHHHHHHHHHHHhhccc-----------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 5666666666666677777776631 112333344445455568899999999987642
Q ss_pred ccchhhhhHHHHHHhhccch--hHHHHHHHHHHH
Q 000941 596 LGAELPACLPVLVDRMGNEI--TRLTAVKAFAVI 627 (1215)
Q Consensus 596 l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i 627 (1215)
+.++++|.+.++++. .|..+.-+++..
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 567788888777653 566666666544
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=3.9 Score=50.76 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCC-------------------
Q 000941 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKS------------------- 480 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~------------------- 480 (1215)
.+++|-+++.+..+. .|..|+.+|+.+....|-...= .---|.|.+++.|+.+.
T Consensus 471 PeQLPiVLQVLLSQv------HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~ 544 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQV------HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP 544 (1387)
T ss_pred hHhcchHHHHHHHHH------HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc
Confidence 356888888877653 5777888998887754432211 11123344443333211
Q ss_pred ------------------------CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcC-CchHHHHHHHHHH
Q 000941 481 ------------------------STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGE-RYYKVTAEALRVC 535 (1215)
Q Consensus 481 ------------------------~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d-~~~~v~~~al~~l 535 (1215)
-++.-|..|.-.|..++.++.-..-.-.-..++...+.-++| +.+-.+++..-|+
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icL 624 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICL 624 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 011233334444555555432111111223344444455556 3567888888899
Q ss_pred HHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCccc
Q 000941 536 GELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLG 597 (1215)
Q Consensus 536 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~ 597 (1215)
+.+.+.....+ +...=..-.+.++..|. |.-+|||.+|+.++|.++.+..+.+.
T Consensus 625 G~LW~d~~~Ar------w~G~r~~AhekL~~~Ls--D~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 625 GRLWEDYDEAR------WSGRRDNAHEKLILLLS--DPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred HHHhhhcchhh------hccccccHHHHHHHHhc--CccHHHHHHHHHHHHHHhcccccccc
Confidence 98886543221 11111111222333343 66799999999999999988655443
No 201
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.57 E-value=18 Score=44.91 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=69.0
Q ss_pred HHHHHHHhhhhcCC----hHHHHHHHHHHHHHHHh-hcC------HHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHH
Q 000941 169 ERLLSALLPQLSAN----QASVRKKSVSCIASLAS-SLS------DDLLAKATIEVVRNLRSK--GAKPEMIRTNIQMVG 235 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~----~~~vrk~a~~~l~~l~~-~~~------~~~~~~l~~~ll~~l~~~--~~~~~~~~~~i~~l~ 235 (1215)
+.+++.+++.+.++ ++.+|..|+.+++.++. ++. ......+++++.+.+.+. ..+.+.+..++.++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 45566666666553 45799999999999986 222 223455666666655432 112245567888888
Q ss_pred HHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhc
Q 000941 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1215)
Q Consensus 236 ~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~ 290 (1215)
.+..-. .++.+...+..+......+|-.|+++|..++..+|..++
T Consensus 472 N~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~ 516 (574)
T smart00638 472 NAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ 516 (574)
T ss_pred ccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH
Confidence 775422 222222222211134678999999999999999995544
No 202
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=2.7 Score=49.67 Aligned_cols=184 Identities=21% Similarity=0.260 Sum_probs=118.1
Q ss_pred hHHHHHhhhccccCC-----C-----cchHHHHHhhcCCCcchhHHHhhhhHhhhcCC-C----chhhhhhhHhHHHHHH
Q 000941 945 NVVAECLGKIALIEP-----A-----KLVPALKVRTTSSAAFTRATVVIAIKYSIVER-P----EKIDEIIFPEISSFLM 1009 (1215)
Q Consensus 945 ~~aae~Lg~l~~~~~-----~-----~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~-~----~~~~~~l~~~i~~~l~ 1009 (1215)
...-++||.+++... + -+-|.|..-++.++..+|..+...+=.++.=. + ++.|..++.-+..+..
T Consensus 148 sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~ 227 (1005)
T KOG1949|consen 148 SKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYS 227 (1005)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 344456666666441 1 23466677788889999988777765544321 2 2456667777778888
Q ss_pred hccCCChHHHHHHHHHHHHHHhcCcccccc-hhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHH
Q 000941 1010 LIKDQDRHVRRAAVLALSTFAHNKPNLIKG-LLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTL 1088 (1215)
Q Consensus 1010 ~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~-~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~l 1088 (1215)
.|.|+-+.||..|...+..+...-=..+-+ .+.+++..+..+.. .|...++|=+.|+++--+
T Consensus 228 LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a-----------------~dt~s~VR~svf~gl~~~ 290 (1005)
T KOG1949|consen 228 LLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELA-----------------FDTSSDVRCSVFKGLPMI 290 (1005)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh-----------------hccchheehhHhcCcHHH
Confidence 999999999999999988866432222221 12334555554433 245568999999999999
Q ss_pred HhhcccCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhChhhHHH--hHHHhhHHH
Q 000941 1089 LDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLA--VLDSLVDPL 1146 (1215)
Q Consensus 1089 l~~~~~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~~~~~--~l~~l~~~l 1146 (1215)
+.... ...+.+++.|.+=-.|.| ...||.-.+.||.++=...-..++. .+|.++..|
T Consensus 291 l~np~-sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L 350 (1005)
T KOG1949|consen 291 LDNPL-SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRL 350 (1005)
T ss_pred HcCcc-chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHH
Confidence 88743 344444444665555788 6679999999998886655444442 344444433
No 203
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=27 Score=43.67 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000941 509 IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 509 l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
+.+|+......+.+....++..+|.++...+-.+... ...+-|.+.+.||.++.++.. .++-+-+.|+.|+-.+
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~----~n~LlPlvhq~W~~vie~~~~--k~~L~v~~a~~~i~~m 874 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY----HNLLLPLVHQTWPSVIECLLC--KDPLIVQRAFSCIEQM 874 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc----chhHhHHHHhhhhHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 3455555566677787889999999988776555332 345789999999999999874 4677889999999999
Q ss_pred HHhccCcccc-hhhhhHHHHH
Q 000941 589 ISTFGDNLGA-ELPACLPVLV 608 (1215)
Q Consensus 589 ~~~~~~~l~~-~~~~~l~~L~ 608 (1215)
..+.|+.+.. .++.++|.+.
T Consensus 875 ~~~sgDFv~sR~l~dvlP~l~ 895 (1014)
T KOG4524|consen 875 GKYSGDFVASRFLEDVLPWLK 895 (1014)
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 9999986654 4555555543
No 204
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=93.37 E-value=22 Score=42.41 Aligned_cols=142 Identities=11% Similarity=0.147 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhh
Q 000941 383 EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA 462 (1215)
Q Consensus 383 e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~ 462 (1215)
++.++.+++-++-.+-+....-+ .|+. -..+...+.+.+.+++..+...++.++..++-.+++.=+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~--------tg~~------~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~ks 455 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALR--------TGLK------RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKS 455 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--------cCCc------cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHH
Confidence 45667777667666655432100 0110 012333444455777777888888889888876554322
Q ss_pred hhhh-hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcch-hhhhhhH-HHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 463 DHIG-SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH-PYIKALS-SPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 463 ~~~~-~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~l~~l~-p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
.++. ..+..+.+.+.++. .+.|..++.+|+.+.=++.. .++ ....++- ..+....+|+.+.|.+.++.++.++.
T Consensus 456 kfl~~ngId~l~s~~~~~~--~n~r~~~~~~Lr~l~f~~de-~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 456 KFLRNNGIDILESMLTDPD--FNSRANSLWVLRHLMFNCDE-EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHcCcHHHHHHHhcCCC--chHHHHHHHHHHHHHhcchH-HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 3322 24555666666554 67888999999988755442 222 2233333 33444557999999999999998887
Q ss_pred Hh
Q 000941 540 RV 541 (1215)
Q Consensus 540 ~~ 541 (1215)
..
T Consensus 533 c~ 534 (678)
T KOG1293|consen 533 CN 534 (678)
T ss_pred cC
Confidence 54
No 205
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=1.2 Score=49.77 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHH
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 421 (1215)
+-+||+-|..-+..++.++|..+...+..+++.+..++.|.+..||...++.+..++-..+ +. .+.
T Consensus 71 NakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~-------------~e-~~s 136 (393)
T KOG2149|consen 71 NAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC-------------KE-DQS 136 (393)
T ss_pred hHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc-------------hh-hhc
Confidence 3589999999999999999988887777788888888889999999999988888776543 21 245
Q ss_pred HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhh
Q 000941 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSL 476 (1215)
Q Consensus 422 ~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l 476 (1215)
..++-++..+...++.-.+.+|..++.+|.-++...|+.+..+...+++.....+
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 5667777778788887788899999999999999998888776555666655544
No 206
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=1.3 Score=49.45 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=96.0
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhh
Q 000941 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY 508 (1215)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 508 (1215)
+-+..+++.-+.++|+.++.-+..+...+|..+..|.-.+++.+.....|.. ..+|.....++..++-...++...|+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~--~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDD--SLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCcc--ccHHHHHHHHHHHHHhhcchhhhcch
Confidence 4445566777889999999999999988888888899999999888887765 57888888888887766667778899
Q ss_pred hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 509 IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 509 l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
+..++|.+..++..-.+.++..++..+.-++..+.|
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 999999999999888889999999999988877644
No 207
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.72 E-value=13 Score=46.55 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=65.3
Q ss_pred HHHHHHHhhhhcCC----hHHHHHHHHHHHHHHHhh-cCH------------HHHHHHHHHHHHHhhcC--CCChHHHHH
Q 000941 169 ERLLSALLPQLSAN----QASVRKKSVSCIASLASS-LSD------------DLLAKATIEVVRNLRSK--GAKPEMIRT 229 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~----~~~vrk~a~~~l~~l~~~-~~~------------~~~~~l~~~ll~~l~~~--~~~~~~~~~ 229 (1215)
..+++.++..+.++ ++.++..|+.+++.++.. +.. ...+.+++.+...+... ..+.+.+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 34555555555443 356999999999988742 222 12344555555555411 112356678
Q ss_pred HHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhh
Q 000941 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1215)
Q Consensus 230 ~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1215)
++.++|.+.. +.+++.+...+.........+|-.|+++|..++..||..+
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v 559 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV 559 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH
Confidence 8999988853 4466666666653223467799999999998888888443
No 208
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.68 E-value=2.7 Score=44.44 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=55.4
Q ss_pred CChhcHHHHHHHHHHHhhc-----cCCC---HHHHHHHHHHHHHHHHhccCc---ccc-hhhhhHHHHHHhhccchhHHH
Q 000941 552 DFKPYVQPIYNAIMSRLTN-----QDQD---QEVKECAISCMGLVISTFGDN---LGA-ELPACLPVLVDRMGNEITRLT 619 (1215)
Q Consensus 552 ~~~~~l~~l~~~l~~~l~~-----~d~~---~~Vr~~Ai~~lg~l~~~~~~~---l~~-~~~~~l~~L~~~L~~e~~r~~ 619 (1215)
...||+.+++|.++..+-. ...| ..+|.-|...++-++.+++.. ++| ..+.++..++++-+-+.|.-.
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 3579999999998877643 2222 449999999999999998763 444 344555666666566678888
Q ss_pred HHHHHHHHH
Q 000941 620 AVKAFAVIA 628 (1215)
Q Consensus 620 a~~al~~i~ 628 (1215)
|++++..+.
T Consensus 350 alkgls~l~ 358 (450)
T COG5095 350 ALKGLSILS 358 (450)
T ss_pred hhhhhhhhc
Confidence 888888765
No 209
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.47 E-value=2.8 Score=44.34 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc---CCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHH
Q 000941 225 EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA---SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTL 301 (1215)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~---~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l 301 (1215)
+.|.++++++ +-.+-+.+++|++++++..+ +-.+-++--..+....++...-.-.+.||+.+++|.++
T Consensus 213 ~~r~aAl~sL---------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSil 283 (450)
T COG5095 213 QTRDAALESL---------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSIL 283 (450)
T ss_pred HHHHHHHHHh---------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHH
Confidence 4555555443 23556778888888777521 01112222222233333333333356799999999887
Q ss_pred HHhc-----cCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHH
Q 000941 302 EYLS-----YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLI 376 (1215)
Q Consensus 302 ~~l~-----~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li 376 (1215)
..+- .+|+ |..-+.+|..|+.+++-+...+|.....+...+.-.+.
T Consensus 284 Tcliakklg~~p~-----------------------------dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 284 TCLIAKKLGNVPD-----------------------------DHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHhcCCCc-----------------------------chhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 7652 1221 11125899999999999999988766655566666677
Q ss_pred hhhcccc--hhHHHHHHHHHHHHHH
Q 000941 377 DRFKERE--ENVKMDVFNTFIELVR 399 (1215)
Q Consensus 377 ~~~~d~e--~~Vr~~~~~~l~~l~~ 399 (1215)
+.|-|++ +.....++.++..+-+
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhch
Confidence 7774443 5666666666655533
No 210
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.13 E-value=1.2 Score=39.36 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=59.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1215)
.+.+|..++..|..+++.-. ......+.++..++..++++++-|==.|+++++.++...++..++.++...
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 57799999999999998877 222467899999999999999999999999999999999887666655544
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=1.4 Score=50.49 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=103.6
Q ss_pred HHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHH-hcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhH
Q 000941 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1215)
Q Consensus 50 ~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~-~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l 128 (1215)
.+-+++.|.++-.|...+-.++.-- ++.. -..++..|+.. +.++++++|.+|..||+-+|-.-+ .+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy--~GTg-n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------~~ 586 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAY--VGTG-NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------DL 586 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHH--hcCC-cchhHhhhheeecccCchHHHHHHHHheeeeEecCc----------ch
Confidence 3446677888888887776665322 2211 13566666665 567788899999999998774322 23
Q ss_pred hHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---
Q 000941 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--- 205 (1215)
Q Consensus 129 ~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--- 205 (1215)
+|..++-+.+.. +..||.+..-+||-.+...|... ..+.+-+...++..-||..|+-+++.+...+.+++
T Consensus 587 lv~tvelLs~sh-N~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 587 LVGTVELLSESH-NFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhHHHHHhhhcc-chhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 445555555544 68899999889998877777643 23344444567777899999999999998887774
Q ss_pred HHHHHHHHHHHhhcC
Q 000941 206 LAKATIEVVRNLRSK 220 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~ 220 (1215)
+..+..++.+.+.+.
T Consensus 660 v~~I~k~f~~vI~~K 674 (926)
T COG5116 660 VKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHHHhhh
Confidence 566777777776543
No 212
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.87 E-value=4.4 Score=46.04 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCC-cchhHHHHHHHHHHHh
Q 000941 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS-TSNLKIEALTFTRLVL 497 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~-~~~~~~~al~~l~~l~ 497 (1215)
.++.++..|..+ +.+.+...|..++. .|.. .+++.+-+|-++..|......... +.......+.++..++
T Consensus 175 Elq~yf~~It~a----~~~~~~~~r~~aL~---sL~t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 175 ELQLYFEEITEA----LVGSNEEKRREALQ---SLRT--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHH----HhCCCHHHHHHHHH---Hhcc--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 344454554444 44455556655543 3322 122333333333333333322111 1233344567777777
Q ss_pred ccCCCCcchhhhhhhHHHHHHHhc----------CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHH
Q 000941 498 SSHSPPVFHPYIKALSSPVLAAVG----------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1215)
Q Consensus 498 ~~~~~~~~~~~l~~l~p~l~~~l~----------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 567 (1215)
.+.. -.+.+|+..++|.++.|+- +..|.+|..|-.++..+++.++.. +...-..+...+.+.
T Consensus 246 ~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-------y~~l~~ri~~tl~k~ 317 (343)
T cd08050 246 DNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-------YNTLQPRITRTLLKA 317 (343)
T ss_pred cCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-------CCcHHHHHHHHHHHH
Confidence 7632 3567899999999999872 345689999999999999877542 333344455555555
Q ss_pred hhccCCCHHHHHHHHHHHHH
Q 000941 568 LTNQDQDQEVKECAISCMGL 587 (1215)
Q Consensus 568 l~~~d~~~~Vr~~Ai~~lg~ 587 (1215)
+.+........=.|+.+++.
T Consensus 318 l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 318 LLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HcCCCCCcchhhHHHHHHHH
Confidence 55333333334445555443
No 213
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.87 E-value=8.9 Score=42.47 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcccCh-hhHHHHHHHHHHHHHhCch-hhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCC
Q 000941 426 KIVKSINRQLREKSI-KTKVGAFSVLRELVVVLPD-CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPP 503 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~-~~r~~~~~~l~~L~~~~~~-~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~ 503 (1215)
.+.+.+.++|+..-+ -|.+.|+.++..+.+..+. .+...+.-..|++...+...+ ..+|-.-+.++...+-..++
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~as--i~Vkp~lL~i~e~~~lpL~~- 130 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYAS--IQVKPQLLDIYEKYYLPLGP- 130 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHhcCccH-
Confidence 456777888876533 3788899999999888754 577777777777777776443 56787888888887766665
Q ss_pred cchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHH
Q 000941 504 VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAIS 583 (1215)
Q Consensus 504 ~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~ 583 (1215)
.+.|.+..++..++.+++|...+.....+..+..+...+++ .-+.+.+|-.+ . ..+++|..|+.
T Consensus 131 ~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~---------~~F~~~lwl~i----i---~sp~~Rl~al~ 194 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD---------KYFWQCLWLCI----I---TSPSRRLGALN 194 (307)
T ss_pred HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh---------hHHHHHHHHHH----h---cCcchhHHHHH
Confidence 78888999999999999988788888899999998877643 13444455433 2 24678987776
Q ss_pred HHHH
Q 000941 584 CMGL 587 (1215)
Q Consensus 584 ~lg~ 587 (1215)
-+..
T Consensus 195 ~l~~ 198 (307)
T PF04118_consen 195 YLLR 198 (307)
T ss_pred HHHH
Confidence 6543
No 214
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.48 E-value=7.9 Score=45.06 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCC--CCcchhHHHHHHHHHHHhccCCC
Q 000941 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK--SSTSNLKIEALTFTRLVLSSHSP 502 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~--~~~~~~~~~al~~l~~l~~~~~~ 502 (1215)
.-..+-|.+.+.+.++..|+.|+..|.+ ..++...++-++..|.+...-. ..+-.+-+-.+..+..++++ +.
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-----DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~ 279 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET-----DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PN 279 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Cc
Confidence 3444445555555677788888765532 1234444444444444443321 11123344556677777765 33
Q ss_pred CcchhhhhhhHHHHHHHhc----------CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccC
Q 000941 503 PVFHPYIKALSSPVLAAVG----------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD 572 (1215)
Q Consensus 503 ~~~~~~l~~l~p~l~~~l~----------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d 572 (1215)
-.+.||+..++|.++.|+- |..|.++.-|...+..+|+.++. .+...-..+...+...+.+..
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~-------~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFST-------LYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHhcCCC
Confidence 3567899999999999873 45677888888899998887633 233333344444455554333
Q ss_pred CCHHHHHHHHHHHHH
Q 000941 573 QDQEVKECAISCMGL 587 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~ 587 (1215)
....-.=.|+.+|..
T Consensus 353 ~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSE 367 (576)
T ss_pred CCchhhhhHHHHHHH
Confidence 333333333444433
No 215
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.33 E-value=35 Score=40.03 Aligned_cols=170 Identities=16% Similarity=0.125 Sum_probs=94.9
Q ss_pred chhHhhHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHh-hccCCc
Q 000941 862 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFN-HCESEE 940 (1215)
Q Consensus 862 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~-~~~~~~ 940 (1215)
+++++..+-.+..++..||...-=|.++..+.+....+.. |.-.+.++++....-.+.+ +...+...|.- ...+.+
T Consensus 467 g~ei~~~~kS~v~nL~~~n~N~sEsD~in~~~ssa~~~~C-L~~~~~~~e~i~tpL~eNi--l~~~~~~tlI~Pavrn~a 543 (885)
T COG5218 467 GSEIKKNAKSAVENLVQGNGNVSESDIINNLPSSASPRMC-LMVCKHVMEHIRTPLSENI--LHEAIVETLILPAVRNSA 543 (885)
T ss_pred chhhcccccccccccCCCCCCCCCchhhccCccccchHHH-HHHHHHHHHHccCcchhhH--HHHHHHHHHhhhhhccCC
Confidence 3566666666666677777666667777777655322221 1112333333211001111 23333333332 122345
Q ss_pred cchhhHHHHHhhhccccCCC---cchHHHHHhhcCCCcchhHHHhhhhHhhh-cCCCch---hhhhhhHhHHHHHHhccC
Q 000941 941 EGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSI-VERPEK---IDEIIFPEISSFLMLIKD 1013 (1215)
Q Consensus 941 e~~r~~aae~Lg~l~~~~~~---~~lp~l~~~l~~~~~~~R~~~i~~lk~~i-~~~~~~---~~~~l~~~i~~~l~~l~D 1013 (1215)
..+|..+.+|||--|..+.. .=.|.+..+....+...+++++..+-.++ .++.++ ++..+..++...++.+..
T Consensus 544 ~~IrE~gve~L~l~clldv~La~~n~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~k~ds~l~~Il~~~l~~~e~ 623 (885)
T COG5218 544 PNIRETGVEILELGCLLDVALARPNHAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEGKLDSLLGDILRHILQGLET 623 (885)
T ss_pred CchhhhhhhhhhhhhhhhHhhcCCchHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHhccCc
Confidence 78899999999987775422 23466777777778888888887765544 444443 555555556666555544
Q ss_pred CChHHHHHHHHHHHHH--HhcCccc
Q 000941 1014 QDRHVRRAAVLALSTF--AHNKPNL 1036 (1215)
Q Consensus 1014 ~d~~Vr~~a~~~L~~~--~~~~p~~ 1036 (1215)
.+..-.+..+|..+ +|+.|+-
T Consensus 624 --~E~q~i~aegl~Kl~l~~~~~Dd 646 (885)
T COG5218 624 --KERQDIIAEGLSKLALSHRMPDD 646 (885)
T ss_pred --hhHHHHhhhHHHHHHHHHhCchH
Confidence 44445666666654 4777764
No 216
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=91.32 E-value=10 Score=44.33 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHH--HHhccCCCcCCCCCChhcHHHHHHHHHH
Q 000941 489 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL--VRVLRPSVEGLGFDFKPYVQPIYNAIMS 566 (1215)
Q Consensus 489 al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l--~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 566 (1215)
-+..+..++...++..+.+....++..+..+++..+++|+..|+..+.+= +.. +..+-..++|.++.
T Consensus 275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l-----------i~~~~~~i~p~i~~ 343 (409)
T PF01603_consen 275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSL-----------ISQNSRVILPIIFP 343 (409)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH-----------HHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH-----------HHhChHHHHHHHHH
Confidence 44566777777777778888899999999999999999999999876432 222 23445667777777
Q ss_pred HhhccCC---CHHHHHHHHHHHHHHHH
Q 000941 567 RLTNQDQ---DQEVKECAISCMGLVIS 590 (1215)
Q Consensus 567 ~l~~~d~---~~~Vr~~Ai~~lg~l~~ 590 (1215)
.+..... +..||..|..++..+..
T Consensus 344 ~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 344 ALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7654222 48899999999877654
No 217
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.06 E-value=41 Score=40.28 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=143.2
Q ss_pred hcCCCcchhhhhHHHHHHHhccc--------cCCCChHHHHHHH-HHHHHhccCcc---cchhHHHHHHHHHHhhccChh
Q 000941 13 ITGKDKDFRYMATSDLLNELNKE--------SFKADADLEVKLS-NIVVQQLDDVA---GDVSGLAVKCLAPLVKKVSEP 80 (1215)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~--------~~~~~~~~~~~i~-~~ll~~L~D~~---~~Vq~~A~~~l~~l~~~~~~~ 80 (1215)
.+++|..-|-|++.-+.+++... ++...+.--+.++ -..+...+||- -++++.-.-.++.++.++...
T Consensus 241 ~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~ 320 (678)
T KOG1293|consen 241 LKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLP 320 (678)
T ss_pred hhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhH
Confidence 47888888999999998888775 3332222112222 22445556773 234443333333466665554
Q ss_pred hHH----HHHHHHHHHh---cCCCcchhhHHHH--HHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHH
Q 000941 81 RVV----EMTDKLCIKL---LNGKDQHRDIASI--ALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1215)
Q Consensus 81 ~~~----~lv~~L~~~~---~~~~~~~r~~a~~--aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~ 151 (1215)
+.+ +++..|+-.. ....++.|-++.- .+....+....-.+...+...-+-.....+.--+ +..++..+|.
T Consensus 321 ~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l 399 (678)
T KOG1293|consen 321 QHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALL 399 (678)
T ss_pred HhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHH
Confidence 433 3333333222 2233343332221 1111111000000101011000000000000001 3456666665
Q ss_pred HHHHHHHHhhhhhh--hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---H-HHHHHHHHHHHhhcCCCChH
Q 000941 152 ILCDVLHKFGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---L-LAKATIEVVRNLRSKGAKPE 225 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~--~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~-~~~l~~~ll~~l~~~~~~~~ 225 (1215)
.+-.+.+. -+.+. .......+-+.+.+.+|+..|.+.+..++..++.-+++- + -...++.+.+.+.++.. .
T Consensus 400 ~~~s~srs-V~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~--n 476 (678)
T KOG1293|consen 400 CLKSFSRS-VSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDF--N 476 (678)
T ss_pred HHHHHHHH-HHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCc--h
Confidence 55433222 12221 233455666777778999999999999999998776654 1 24567777777777654 4
Q ss_pred HHHHHHHHHHHHHhhhhh--hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 226 MIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~--~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
.|..++.++-.+...+.. ++.++-.--...+...++ |.|.++.|.|++.+.++...|.
T Consensus 477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n---d~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN---DPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh---CCCHHHHHHHHHHHHHhhcCcH
Confidence 676777777776665553 444444444677777776 6899999999999999987765
No 218
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=53 Score=41.36 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=100.8
Q ss_pred hhhhhHhHHHHHHhccCCChH--HHHHHHHHHHHHHhcCcccccchhhh--hhHHHHHHhhcccccceeeeccCceeecc
Q 000941 997 DEIIFPEISSFLMLIKDQDRH--VRRAAVLALSTFAHNKPNLIKGLLPE--LLPLLYDQTIVKKELIRTVDLGPFKHTVD 1072 (1215)
Q Consensus 997 ~~~l~~~i~~~l~~l~D~d~~--Vr~~a~~~L~~~~~~~p~~i~~~l~~--llp~l~~~~~~~~~lir~v~mgpfkh~~D 1072 (1215)
..+|..++..++..+..++++ .--.--.++-.+....|.+ .++++. .+|.+.+....+.
T Consensus 1998 k~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L-ADqip~LGylPK~~~Am~~~n---------------- 2060 (2235)
T KOG1789|consen 1998 KLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL-ADQLPSLGYLPKFCTAMCLQN---------------- 2060 (2235)
T ss_pred HHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch-hhhCCCccchHHHHHHHHhcC----------------
Confidence 456777788888877755443 1111122334456677877 555554 5676665433211
Q ss_pred cChhHHHHHHHHHHHHHhh--cccCCCchhchHHHHhcccCCcchhHhhHHHHHHHHHhhChhhHHH-hHH-HhhHHHHh
Q 000941 1073 DGLELRKAAFECVDTLLDS--CLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLA-VLD-SLVDPLQK 1148 (1215)
Q Consensus 1073 dgl~~Rk~A~~~l~~ll~~--~~~~~~~~~~~~~~~~~gl~D~~di~~~~~~~l~~l~~~~p~~~~~-~l~-~l~~~l~~ 1148 (1215)
-.+-+.|...+-.|-++ |.+.+.-.+-++ .+..+++...+---+++-.|.|+....-+++.. -|. .|++.|-+
T Consensus 2061 --~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2061 --TSAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred --CcCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence 12336777777777654 433333333342 466778877787779999999999988876662 211 23333333
Q ss_pred h-----hcccCCcchhhhhhhhHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 000941 1149 T-----INFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSE 1198 (1215)
Q Consensus 1149 ~-----l~~k~k~~~~~qe~e~~~e~~rs~l~~~~~l~~~~~~~~~~~~~~~~~~ 1198 (1215)
. |+.--|.++.+.++-|..-..-+.+..-.+.++|- ++++.|..|-.+
T Consensus 2138 LLd~~tL~~~~~~aas~A~Iv~aLk~~~~~l~vg~kV~EIL--d~S~VWSAfKDQ 2190 (2235)
T KOG1789|consen 2138 LLDSSTLNGVSNGAAARAEIVDALKSAILDLKVGQKVAEIL--DKSPVWSAFKDQ 2190 (2235)
T ss_pred HhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHhhhc
Confidence 2 44444667777777553222222233333333332 456788888765
No 219
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.92 E-value=1.8 Score=49.05 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccC----C-ChhHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----M-NTEIRCECLDILC 154 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----~-~~~v~~~al~~L~ 154 (1215)
.....+...+.+.+.+.++..|..+...|++ + +-++.++|.+++.+.+.- . +...-...+.++.
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~t---D--------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ 242 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRT---D--------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVR 242 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc---C--------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 3445556666666655555555544443332 1 125667777777665421 0 1333444555666
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhc----------CChHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCC
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLS----------ANQASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKG 221 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~----------~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~ 221 (1215)
.|+.+-.-.+.+|.-.+++.++.++- +..+.+|.-|...++.++..++.. +...++..+.+.+.++.
T Consensus 243 ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 243 ALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred HHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC
Confidence 66666666677887778888887762 245689999999999999887665 45667777777777665
Q ss_pred CChHHHHHHHHHHHHH
Q 000941 222 AKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 222 ~~~~~~~~~i~~l~~l 237 (1215)
......-.++..++.+
T Consensus 323 ~~~~~~YGAi~GL~~l 338 (343)
T cd08050 323 KPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCcchhhHHHHHHHHh
Confidence 4222344445444443
No 220
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.68 E-value=46 Score=40.20 Aligned_cols=361 Identities=15% Similarity=0.175 Sum_probs=186.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc--cchhHHHHHHHHHHhhccChhh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--GDVSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~--~~Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
-.|+.+|.|+.|++..+|---++-|. .+++.- + ......-=+..|+....+|+ .-|||.+.--|..=+.+++.+.
T Consensus 23 ~~L~plLlkl~S~~~~VR~kV~eil~-hin~Ri-k-~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e 99 (501)
T PF13001_consen 23 KYLPPLLLKLASPHASVRKKVIEILS-HINKRI-K-SNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEE 99 (501)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHh-c-cCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHH
Confidence 35788999999999999986554443 333210 0 00112223567888888887 8899999977777778898888
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHH---HHhccCc-------h----hh------HHHHH-HhHhHHHHhhh----
Q 000941 82 VVEMTDKLCIKLLNGKDQHRDIASIALKT---IIAEVTT-------S----SL------AQSIH-TSLTPQLTKGI---- 136 (1215)
Q Consensus 82 ~~~lv~~L~~~~~~~~~~~r~~a~~aL~~---~i~~~~~-------~----~~------~~~~~-~~l~p~L~~~l---- 136 (1215)
-.++++.++..+..-..++++........ +|+-.+. . .. ..... ..+.|.....+
T Consensus 100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~ 179 (501)
T PF13001_consen 100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQP 179 (501)
T ss_pred HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhcccccccc
Confidence 89999999999975443444433332221 2221111 0 00 00000 11222222111
Q ss_pred ---------hccCCChhHHHH-------------HHHHHHHH----HHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHH
Q 000941 137 ---------TLKDMNTEIRCE-------------CLDILCDV----LHKFGNLMSNDHERLLSALLPQLSANQASVRKKS 190 (1215)
Q Consensus 137 ---------~~~~~~~~v~~~-------------al~~L~~l----~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a 190 (1215)
.... .+..... .-+-|.+. ++-....+.+... ....++-.-.+++..|...|
T Consensus 180 ~~~~~~pgl~~~~-~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~-~~~~~liAsad~~~~V~~~a 257 (501)
T PF13001_consen 180 NRAYACPGLSPAD-PPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEE-RFPPLLIASADSNSSVSDRA 257 (501)
T ss_pred ccccCCCCCCCCC-CCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHh-HHhheeeEEeCCcchHHHHH
Confidence 0000 0000000 00001000 0000111111112 22222233345667888899
Q ss_pred HHHHHHHHhhcCHH-HHHHHHHHHHH-Hhhc----CCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccC
Q 000941 191 VSCIASLASSLSDD-LLAKATIEVVR-NLRS----KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1215)
Q Consensus 191 ~~~l~~l~~~~~~~-~~~~l~~~ll~-~l~~----~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~ 264 (1215)
-..|-.+.....+. +.+.++...+. ++.. +..+...|. ..++.++++... ....+.++..+...+...
T Consensus 258 e~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~---kIL~~L~kS~~A--a~~~~~~~~i~~~~l~~~- 331 (501)
T PF13001_consen 258 EDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQE---KILSLLSKSVIA--ATSFPNILQIVFDGLYSD- 331 (501)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHH---HHHHHHHHhHHH--HhCCccHHHHHhccccCC-
Confidence 99888887776665 45555554442 1111 111223333 455566664321 123456666666666531
Q ss_pred CCcHHHHHHHHHHH---HHHHHhChhh-hcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCC
Q 000941 265 ENDEELREYSLQAL---ESFLLRCPRD-ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDED 340 (1215)
Q Consensus 265 ~~d~elre~al~~l---~~l~~~~~~~-~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d 340 (1215)
.....+|..+++.+ ......++.. +...-+.+..-+.+.+. .+.. ...+ .
T Consensus 332 ~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~--~~~~--------------------~~~~----~ 385 (501)
T PF13001_consen 332 NTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQ--DSSS--------------------QSNS----S 385 (501)
T ss_pred ccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccc--cccc--------------------cCCC----c
Confidence 12567888888888 6666666532 11111222222222220 0000 0000 0
Q ss_pred ccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc
Q 000941 341 ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1215)
Q Consensus 341 ~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~ 402 (1215)
.+-+.|..+=.++|.+....|..+..=+ .++..|...+.+..+++|..+-+|+..++.+..
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 1237899999999999999997663211 233444555577779999999999999987653
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.57 E-value=2.2 Score=52.85 Aligned_cols=159 Identities=20% Similarity=0.181 Sum_probs=103.4
Q ss_pred CCCcchhhhhHHHHHHHhccccCCCCh--HHHHHHHHHHHHhccCc-ccchhHHHHHHHHHHhhccChhhHH----HHHH
Q 000941 15 GKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEPRVV----EMTD 87 (1215)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~i~~~ll~~L~D~-~~~Vq~~A~~~l~~l~~~~~~~~~~----~lv~ 87 (1215)
+.++.-|-||..=|...... |++.. -....++...+..|+|+ .+-.|.=.+-|||.|-..+.+..|. .-.+
T Consensus 568 ~~~~EqrtmaAFVLAviv~n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRN--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcc--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 34567899999888766654 44433 23345788899999995 7888999999999999887776663 3466
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHHhccCch-hhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh
Q 000941 88 KLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1215)
Q Consensus 88 ~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~-~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~ 166 (1215)
+|...+.++-+++|.+|..||++++.+.... +-...+++..+- |.+ .+++.+ .
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-----l~~----~~~~~E-----------------~ 699 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-----LDD----ERTSIE-----------------D 699 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-----chh----hhhhHH-----------------H
Confidence 7888888888999999999999999764320 001111111111 000 001000 0
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1215)
.....+..++..+++.++.+|+....+++.++...
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 11111234556778888999999999998887544
No 222
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=90.42 E-value=40 Score=39.06 Aligned_cols=107 Identities=11% Similarity=0.072 Sum_probs=49.2
Q ss_pred HHHHHHh-ccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChH-
Q 000941 107 ALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA- 184 (1215)
Q Consensus 107 aL~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~- 184 (1215)
||-++|. .+| .++.-.++.++-.+..+.+.. +..+...++..++-|+ ...+ .+.-..++++.-.|..|..
T Consensus 219 ALvAviNskfP--~IgElLlkrLilqf~r~f~Rn--Dk~~c~~~~kfiahLi---nq~V-ahEIv~Leil~lLLe~PTdd 290 (739)
T KOG2140|consen 219 ALVAVINSKFP--QIGELLLKRLILQFKRSFRRN--DKVSCLNASKFIAHLI---NQQV-AHEIVALEILTLLLERPTDD 290 (739)
T ss_pred HHHHHHccCCc--hHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHhcCCCCc
Confidence 3444442 333 455666677776666666543 3334444444443332 2222 1333455666666665432
Q ss_pred --HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 000941 185 --SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1215)
Q Consensus 185 --~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~ 221 (1215)
.|--.-+.-.|+-..-++..-++.+.+.+-..|....
T Consensus 291 SvevaI~flkecGakL~~VSpr~~n~IfErlR~ILhe~E 329 (739)
T KOG2140|consen 291 SVEVAIAFLKECGAKLAEVSPRALNGIFERLRYILHEGE 329 (739)
T ss_pred hHHHHHHHHHHHHHHHHHhChHHHhHHHHHHHHHHhHhh
Confidence 2322333333433333344445555555544444433
No 223
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.35 E-value=0.32 Score=44.75 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=44.4
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK 75 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~ 75 (1215)
.+.|+..-.-|++|+-..+...+....--..-.....+++++++++++||..|.+|+..++.
T Consensus 54 ~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 54 KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45688888899999977776532111001223467889999999999999999999998864
No 224
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=12 Score=49.16 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccC
Q 000941 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~ 264 (1215)
.|-+..+.|++..+...+++ |.++...++...++... ..|-.++..+..+....|....+++++++|++-+.++
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~~--~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~E--- 1592 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDD-LKPLNQKILKKTRSSSR--KARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELME--- 1592 (1621)
T ss_pred HHHHHHHHHHHhhccCChhh-hHHHHHHHHHHhccccH--HHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHh---
Confidence 47788889999998888777 77777666666555432 5677789999999999999999999999999999987
Q ss_pred CCcHHHHHHHHH
Q 000941 265 ENDEELREYSLQ 276 (1215)
Q Consensus 265 ~~d~elre~al~ 276 (1215)
|+++++...|-.
T Consensus 1593 D~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1593 DEDDEVECLCQK 1604 (1621)
T ss_pred hhHHHHHHHHHH
Confidence 567776554443
No 225
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=40 Score=43.92 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=121.9
Q ss_pred hccCcccchhHHHHHHHHHHhhccChh---hHHHHHHHHHHHhcCCCcc---hhhHHHHHHHHHHhccCchhhHHHHHHh
Q 000941 54 QLDDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCIKLLNGKDQ---HRDIASIALKTIIAEVTTSSLAQSIHTS 127 (1215)
Q Consensus 54 ~L~D~~~~Vq~~A~~~l~~l~~~~~~~---~~~~lv~~L~~~~~~~~~~---~r~~a~~aL~~~i~~~~~~~~~~~~~~~ 127 (1215)
....+..+||-...+|+-.+....++. .|..+.+-|-.....+.+. .-..+-.+|+-++.++=+ .+-......
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLq-SLp~sci~~ 928 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQ-SLPTSCILD 928 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchh-cCChHHHHH
Confidence 334678899999999999999877662 2444444333222222222 223455567766654322 121233455
Q ss_pred HhHHHHhhhhccCCChhHHHHHH---HHHHHHHHH----hhhhhh--------------------hhHHHHHHHHhhhhc
Q 000941 128 LTPQLTKGITLKDMNTEIRCECL---DILCDVLHK----FGNLMS--------------------NDHERLLSALLPQLS 180 (1215)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al---~~L~~l~~~----~g~~l~--------------------~~~~~ll~~ll~~l~ 180 (1215)
++..+...-.+.. +..+...|+ ..++|.+.+ .|+.-. .-+-.++..+.....
T Consensus 929 lidtl~~fs~Qkt-dlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKT-DLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHhhhc-cccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 5555554444432 455655554 456787776 121111 012334555666667
Q ss_pred CChHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhc-------CCCCh-----HHHHHHHHHHHHHHhhhhhh
Q 000941 181 ANQASVRKKSVSCIASLAS----SLSDDLLAKATIEVVRNLRS-------KGAKP-----EMIRTNIQMVGALSRAVGYR 244 (1215)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~----~~~~~~~~~l~~~ll~~l~~-------~~~~~-----~~~~~~i~~l~~l~~~~~~~ 244 (1215)
|++..||+.|++.+=.+.. .++...|..+.-.++..+-+ ..|+. +-.++.+.+++.|++-.+..
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 8889999999998865543 34555455443333222211 12211 12356788888888876654
Q ss_pred hccc---------hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 245 FGPH---------LGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 245 ~~~~---------l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
|.-. ...+..++..... +...++.-+++.+++.++.
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s---~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHS---DISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHh---cCChHhHHHHHHHHHHHHH
Confidence 3322 1223333333333 4667777777777766543
No 226
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=19 Score=47.64 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---HHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccc
Q 000941 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVV---RNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1215)
Q Consensus 172 l~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll---~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~ 248 (1215)
+..++..+...++..|.+|++.++.+......+.+..++++.. ..+-.... ..+|....+.+..+...+..++.||
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4445566666778899999999999988776664444444433 33322332 3788899999999999999999999
Q ss_pred hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH
Q 000941 249 LGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1215)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1215)
+..+||..+-+.- |.+..+.++|...+..
T Consensus 122 LK~li~~wl~~~~---d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQF---DLDYPVSEAAKASFKD 150 (1312)
T ss_pred HHhhhhhhhheec---ccchHHHHHHHHHHHh
Confidence 9999999987654 4566676666665544
No 227
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.95 E-value=30 Score=36.96 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=89.4
Q ss_pred HHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHH
Q 000941 373 PKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1215)
Q Consensus 373 p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1215)
|.|+... ++.++++....++++..++.+- . ...|.+++.+......+....+..+..++.
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~-----------------~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~ 63 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK-----------------N--VCVPPVLQTLVSLVEQGSLELRYVALRLLT 63 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC-----------------c--cchhHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 4444433 5667888888888888887542 1 346778888887777666656667778888
Q ss_pred HHHHhCchhhhhhhhhhhHH-HHHh---hcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHh-cCCchH
Q 000941 452 ELVVVLPDCLADHIGSLIPG-IEKS---LNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GERYYK 526 (1215)
Q Consensus 452 ~L~~~~~~~l~~~~~~lv~~-l~~~---l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l-~d~~~~ 526 (1215)
.+....+..+ +++..++.. ..+. ..+........+.....+..+++..+ + +-..+++.+...+ ++....
T Consensus 64 ~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~----~g~~ll~~ls~~L~~~~~~~ 137 (234)
T PF12530_consen 64 LLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP-D----HGVDLLPLLSGCLNQSCDEV 137 (234)
T ss_pred HHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h----hHHHHHHHHHHHHhccccHH
Confidence 8877655444 333333222 1111 11111112334444456667766532 2 6677888888888 677778
Q ss_pred HHHHHHHHHHHHHHh
Q 000941 527 VTAEALRVCGELVRV 541 (1215)
Q Consensus 527 v~~~al~~l~~l~~~ 541 (1215)
++..|+..+..+|+.
T Consensus 138 ~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 138 AQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999999999854
No 228
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=89.95 E-value=1.1 Score=39.65 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHH
Q 000941 341 ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE--ENVKMDVFNTFIEL 397 (1215)
Q Consensus 341 ~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e--~~Vr~~~~~~l~~l 397 (1215)
..|.+|..|++++..+...+.+....+...+...+.+.|.|+. ..+...++.++..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3699999999999999998876666666677777777776654 44566666665555
No 229
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.78 E-value=84 Score=41.82 Aligned_cols=253 Identities=16% Similarity=0.164 Sum_probs=138.5
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhc-CCCCcchhHHHHHHHHHHHhccCCCCcc
Q 000941 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN-DKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1215)
Q Consensus 427 i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1215)
++..++..|..+...+.-.|..+-..++...+..+.+.+...+. .++. +......++.....++..+-...
T Consensus 182 ~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~---~~~~~~~s~~~~~~~~~he~i~~L~~~~----- 253 (1266)
T KOG1525|consen 182 LLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLN---SCLTEYKSRQSSLKIKYHELILELWRIA----- 253 (1266)
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHH---HHHhhccccccchhhHHHHHHHHHHHhh-----
Confidence 34444444444444455566666666666555544444433332 2222 11122334444444444443221
Q ss_pred hhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 000941 506 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 585 (1215)
Q Consensus 506 ~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~l 585 (1215)
...+-.++|.+...+....-.++-+|.+.+|.++..-.. .+..-.+.+|...+.++. |.+.+||-.++.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-------~l~~~~~~~~~~fl~r~~--D~~~~vR~~~v~~~ 324 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-------QLSETYDDLWSAFLGRFN--DISVEVRMECVESI 324 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-------hhcccchHHHHHHHHHhc--cCChhhhhhHHHHh
Confidence 123566777777777666667888999999998753211 122445678888888876 77899999999998
Q ss_pred HHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000941 586 GLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1215)
Q Consensus 586 g~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1215)
.++..+-++.. .-...+-.+..+.-++..|.....++..+...... -.+.+.++..+..-+++-.+.+|..|+.-
T Consensus 325 ~~~l~~~~~~~--~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~---l~~~~~ll~~~~eR~rDKk~~VR~~Am~~ 399 (1266)
T KOG1525|consen 325 KQCLLNNPSIA--KASTILLALRERDLDEDVRVRTQVVIVACDVMKFK---LVYIPLLLKLVAERLRDKKIKVRKQAMNG 399 (1266)
T ss_pred HHHHhcCchhh--hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh---hhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88876632211 11112222333444554444332222211111001 23444466677777788888999999999
Q ss_pred HHHHHHHh------CCCCCcchHHHHHHHhhhhcCCCChhhH
Q 000941 666 MNSLVVAY------GDKIGASAYEVIIVELSTLISDSDLHMT 701 (1215)
Q Consensus 666 L~~l~~~~------~~~~~~~~~~~~l~~l~~~l~~~d~~~~ 701 (1215)
|..+..++ ++....+-+..+-..+..++...|..-+
T Consensus 400 LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 400 LAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99999862 1111122244455556666655555555
No 230
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.66 E-value=28 Score=43.70 Aligned_cols=123 Identities=24% Similarity=0.278 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhh----------hccchhhhHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHhChhhhccc
Q 000941 224 PEMIRTNIQMVGALSRAVGYR----------FGPHLGDTVPVLIDYCTSA-SENDEELREYSLQALESFLLRCPRDISSY 292 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~----------~~~~l~~iip~ll~~~~~~-~~~d~elre~al~~l~~l~~~~~~~~~~~ 292 (1215)
...+.+++.++|++++..-.. .......+++.+.+.+... +..|.+-+-.++.+|+++-
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g---------- 518 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG---------- 518 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------
Confidence 357888999999999864322 3444556666666555421 1355677778888888762
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHH
Q 000941 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC 372 (1215)
Q Consensus 293 l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~ 372 (1215)
.+.+++.+.+++..+ .+.+-.+|-+|+.+|+.+....|+... +.++
T Consensus 519 ~~~~i~~l~~~i~~~-------------------------------~~~~~~~R~~Ai~Alr~~~~~~~~~v~---~~l~ 564 (618)
T PF01347_consen 519 HPESIPVLLPYIEGK-------------------------------EEVPHFIRVAAIQALRRLAKHCPEKVR---EILL 564 (618)
T ss_dssp -GGGHHHHHTTSTTS-------------------------------S-S-HHHHHHHHHTTTTGGGT-HHHHH---HHHH
T ss_pred CchhhHHHHhHhhhc-------------------------------cccchHHHHHHHHHHHHHhhcCcHHHH---HHHH
Confidence 134566666665310 023347999999999988776664333 2333
Q ss_pred HHHHhhhcccchhHHHHHHH
Q 000941 373 PKLIDRFKEREENVKMDVFN 392 (1215)
Q Consensus 373 p~Li~~~~d~e~~Vr~~~~~ 392 (1215)
|.+... ....+||..|+.
T Consensus 565 ~I~~n~--~e~~EvRiaA~~ 582 (618)
T PF01347_consen 565 PIFMNT--TEDPEVRIAAYL 582 (618)
T ss_dssp HHHH-T--TS-HHHHHHHHH
T ss_pred HHhcCC--CCChhHHHHHHH
Confidence 433211 123568987653
No 231
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=89.59 E-value=43 Score=41.09 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC----
Q 000941 148 ECLDILCDVLHKFGNLMSNDHERLLSALLPQLS-ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA---- 222 (1215)
Q Consensus 148 ~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~---- 222 (1215)
..+..+-.-+......|...+..++..++...= .-++.+++.-+.-++.|+..- ..++..++..+++.+..+..
T Consensus 51 ~~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~~~~~~~ 129 (563)
T PF05327_consen 51 SQLIRWLKALSSCVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPPPSSIAE 129 (563)
T ss_dssp HHHHHHHHHHHHGGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCCCccccc
Confidence 333333333344444555557778887776632 234466776677777776554 33566677777766643221
Q ss_pred --------ChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH
Q 000941 223 --------KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294 (1215)
Q Consensus 223 --------~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1215)
..........++..|++..|.. ...++|.+.+.+-..........- -...+=.+..++|.--...+.
T Consensus 130 ~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s----~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y~P~L~~~Il~ 204 (563)
T PF05327_consen 130 WPGCPPEKRREIYERVHDALQKILRLVPTS----PSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEYCPELRSDILS 204 (563)
T ss_dssp ---------------HHHHHHHHHHH-GGG----HHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC-GGGHHHHHH
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHcCCC----HHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcchHHHHHHHHH
Confidence 0122234567788888766643 233444444444322122222222 233444567778854445556
Q ss_pred HHHHHHHHH
Q 000941 295 EILHLTLEY 303 (1215)
Q Consensus 295 ~ii~~~l~~ 303 (1215)
-|+..+++.
T Consensus 205 lIi~rLi~i 213 (563)
T PF05327_consen 205 LIIERLIKI 213 (563)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 232
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.44 E-value=1.5e+02 Score=43.11 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh-h---hhhhhHHHHHhhcCC---CCcchhHHHHHH
Q 000941 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD-H---IGSLIPGIEKSLNDK---SSTSNLKIEALT 491 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~-~---~~~lv~~l~~~l~d~---~~~~~~~~~al~ 491 (1215)
.+..+++.|+....+....... -..-+.++.++....+|+..+ - +-+++|.+.++++.- .....+|.
T Consensus 626 vl~phv~~Ii~~smela~~a~e--plnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkd---- 699 (3550)
T KOG0889|consen 626 VLRPHVHDIISTSMELATTAPE--PLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKD---- 699 (3550)
T ss_pred hcccchhHHHHHHHHHHhcCCc--chhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHH----
Confidence 4677888888776666543221 233467888888888765322 2 333344444444311 11122221
Q ss_pred HHHHHhccCC--CCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhh
Q 000941 492 FTRLVLSSHS--PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 569 (1215)
Q Consensus 492 ~l~~l~~~~~--~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 569 (1215)
++..++-+.+ -..+.||++.++.++..+++.+ +++.+.+|.++.-.+.++.|.-- ...+.|..+.++..+...++
T Consensus 700 LfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL--~~~mepv~~~lmqaLw~~l~ 776 (3550)
T KOG0889|consen 700 LFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFL--DPIMEPVRDDLMQALWSHLR 776 (3550)
T ss_pred HHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhh--hHHHHHHHHHHHHHHHHhcc
Confidence 1111211111 1356799999999999999754 68999999999998888766310 11233444445555555444
Q ss_pred ccCCCHHHHHHHHHHHHHHHHh
Q 000941 570 NQDQDQEVKECAISCMGLVIST 591 (1215)
Q Consensus 570 ~~d~~~~Vr~~Ai~~lg~l~~~ 591 (1215)
..- +..+-..|+..+|-+-++
T Consensus 777 ~~~-~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 777 PVP-NYSYSHRALRILGKLGGR 797 (3550)
T ss_pred CCC-CchHHHHHHHHHHhhcCc
Confidence 321 456677888888876543
No 233
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=62 Score=38.19 Aligned_cols=112 Identities=15% Similarity=0.247 Sum_probs=67.2
Q ss_pred cchhhhhhhHHHHHHHhc------------CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc
Q 000941 504 VFHPYIKALSSPVLAAVG------------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1215)
Q Consensus 504 ~~~~~l~~l~p~l~~~l~------------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 571 (1215)
.|+||+.+++..+...++ +.+...+....+++.++.-.+|.. .-++.+ ..++..+
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~---------e~lk~~----~~~l~e~ 399 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD---------ECLKQM----YIRLKEN 399 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH----HHHHccC
Confidence 567888888888877664 112344555555555655544431 223333 3444445
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHH
Q 000941 572 DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIA 628 (1215)
Q Consensus 572 d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~ 628 (1215)
+.+.+.-|+|+.++..++.+....=.+.++.++..+++.=.....|.+++-.+|.+.
T Consensus 400 ~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ 456 (559)
T KOG2081|consen 400 NASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPLRYTSILLLGEYS 456 (559)
T ss_pred CCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhHHHHHHHHHHHHH
Confidence 668999999999999988776433333455555555433222236777777777764
No 234
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.11 E-value=4.2 Score=39.77 Aligned_cols=140 Identities=18% Similarity=0.221 Sum_probs=85.0
Q ss_pred chhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccC
Q 000941 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD 140 (1215)
Q Consensus 61 ~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~ 140 (1215)
-|++....+++.++.+--++.|+.+++.+++.+.++ +.........|+.+.+++.. ..+..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~------------------~~~~~ 63 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD------------------FRRSS 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT------------------SHCCH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh------------------hhchh
Confidence 478899999999998877788999999999988663 44455566666666554321 00000
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC----hHHHHHHHHHHHHHHHhhcCHHHH-H-HHHHHHH
Q 000941 141 MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN----QASVRKKSVSCIASLASSLSDDLL-A-KATIEVV 214 (1215)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~----~~~vrk~a~~~l~~l~~~~~~~~~-~-~l~~~ll 214 (1215)
.....+.+.-+ .+....+.+++.+...+... ...+.+.++.|+.......+-..+ + .+++.+.
T Consensus 64 ~~~~r~~~l~~-----------~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~ 132 (148)
T PF08389_consen 64 LSQERRRELKD-----------ALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIF 132 (148)
T ss_dssp SHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHH
T ss_pred hhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHH
Confidence 00111111111 11222344444444444332 267899999999999987777643 2 4888888
Q ss_pred HHhhcCCCChHHHHHHHHHH
Q 000941 215 RNLRSKGAKPEMIRTNIQMV 234 (1215)
Q Consensus 215 ~~l~~~~~~~~~~~~~i~~l 234 (1215)
+.+.++. .+..+++|+
T Consensus 133 ~~l~~~~----~~~~A~~cl 148 (148)
T PF08389_consen 133 QLLQSPE----LREAAAECL 148 (148)
T ss_dssp HHTTSCC----CHHHHHHHH
T ss_pred HHcCCHH----HHHHHHHhC
Confidence 8885544 466777664
No 235
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.05 E-value=1.1 Score=44.97 Aligned_cols=94 Identities=15% Similarity=0.287 Sum_probs=75.4
Q ss_pred ccCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHH
Q 000941 1093 LDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIR 1171 (1215)
Q Consensus 1093 ~~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~~r 1171 (1215)
++++|+..++ |.+..||.+ +++-+..+-..+.-|....+..+++.|.+|+-++|+.|...- .|.+.
T Consensus 107 pe~Ldy~~yL-p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd------------~ev~~ 173 (262)
T KOG3961|consen 107 PEKLDYCPYL-PLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRD------------DEVIC 173 (262)
T ss_pred HHhccchHHH-HHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhcc------------HHHHH
Confidence 4678888899 899999999 999999999999999999999999999999999999986431 26677
Q ss_pred HHHHHHHHhhcccCCCCChhHHHHHHHHh
Q 000941 1172 SALRAIASLNQISGGDCSMKFKSLMSEIS 1200 (1215)
Q Consensus 1172 s~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 1200 (1215)
.+|+++..|....+- ..+++.-|+.++.
T Consensus 174 ~~Lkvlq~lv~~~~~-vG~aLVPfYRQlL 201 (262)
T KOG3961|consen 174 RTLKVLQQLVVSVGC-VGAALVPFYRQLL 201 (262)
T ss_pred HHHHHHHHHHHhccc-cchhhhhHHHHhh
Confidence 788888777644331 2256677777754
No 236
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=87.83 E-value=47 Score=37.85 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=92.1
Q ss_pred cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC--
Q 000941 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-- 457 (1215)
Q Consensus 380 ~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~-- 457 (1215)
+|.+|.+....+.++..=+...+ .+.-+.+++.+.+.++++.+.+|..-+..++......
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~------------------~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLS------------------SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhC------------------cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 78888888777666655443321 1123677889999999998889988888777766411
Q ss_pred ---chhhhhhhhhhhHHHHHhhcCCCCcc--hhHHHHHHHHHHHhccCCCCcc--------------hhhhhhhHHHHHH
Q 000941 458 ---PDCLADHIGSLIPGIEKSLNDKSSTS--NLKIEALTFTRLVLSSHSPPVF--------------HPYIKALSSPVLA 518 (1215)
Q Consensus 458 ---~~~l~~~~~~lv~~l~~~l~d~~~~~--~~~~~al~~l~~l~~~~~~~~~--------------~~~l~~l~p~l~~ 518 (1215)
.....+.++.++..+.++..++.... ..-..+..++. +... ..... .|.+ -+-+-+..
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~-~~~~~~~~~~~~~~l~~~~kps~-ll~~kvys 171 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSW-KLDKIDSKNISFWSLALDPKPSF-LLSEKVYS 171 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccc-cchhhhhhhhhhhhhccCCCcch-hcCHHHHh
Confidence 11123344444555545545443211 11122333322 1000 00000 0000 00111222
Q ss_pred HhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccC
Q 000941 519 AVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 594 (1215)
Q Consensus 519 ~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~ 594 (1215)
.+.+ .....+.+.++..+........ ..+. .......++-.+.......+||+.|+.++..+....+.
T Consensus 172 kl~~--~~d~~w~~~al~~~~~~~~~~~---~~~~---~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 172 KLAS--EEDLCWLLRALEALLSDHPSEL---SSDK---SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred ccCC--HhHHHHHHHHHHHHHhcchhhh---hhhH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 2111 1223344455554443332210 1111 34445555555554445789999999999988776543
No 237
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.76 E-value=19 Score=40.48 Aligned_cols=168 Identities=12% Similarity=0.248 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHh----hhcccchhHH-HHHHHHHHHHHHHhcccCCCcCCCCCCChhh
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLID----RFKEREENVK-MDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~----~~~d~e~~Vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1215)
.||+.-.+++.+.+...++. ..+...++|.+++ -++...+..| .+++.++.++++..+... .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---------~~-- 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---------QP-- 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---------CC--
T ss_pred HHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---------hh--
Confidence 35677778888888776532 2244445555443 2233334444 356788888988876310 01
Q ss_pred HHHHHHHHHHHHHHHHhcc---cChhhHHHHHHHHHHHHHhCchhhh----hhhhhhhHHHHHhhcCCCCcchhHHHHHH
Q 000941 419 LLKQEVSKIVKSINRQLRE---KSIKTKVGAFSVLRELVVVLPDCLA----DHIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~---~~~~~r~~~~~~l~~L~~~~~~~l~----~~~~~lv~~l~~~l~d~~~~~~~~~~al~ 491 (1215)
.+...+..++......+++ ..|..|..-+.+++.+....+..+. +.+..++..+.-++++.. .++...++.
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~--~~I~~~~L~ 187 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTN--REISETGLN 187 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSS--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCc--HHHHHHHHH
Confidence 2334445555555555544 2467899999999999988766542 367888888888888765 678888888
Q ss_pred HHHHHhccCCC---C----cchhhhhhhHHHHHHHhcCCch
Q 000941 492 FTRLVLSSHSP---P----VFHPYIKALSSPVLAAVGERYY 525 (1215)
Q Consensus 492 ~l~~l~~~~~~---~----~~~~~l~~l~p~l~~~l~d~~~ 525 (1215)
.+..+++.... + -++.|.-.++..+...+-|+..
T Consensus 188 ~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 188 ILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 88888765332 1 1123445555555555555544
No 238
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.63 E-value=1.1e+02 Score=40.49 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhCchhhH----HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhh
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLS----KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~----~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1215)
-.+||.|..+|-.| +|++.-. --+..++..++..+...-+ +..+++..+++.+ .|+.|... +
T Consensus 365 ~aLRrYa~MALTNL--TFGDv~NKa~LCs~rgfMeavVAQL~s~pe----eL~QV~AsvLRNL----SWRAD~nm----K 430 (2195)
T KOG2122|consen 365 NALRRYAGMALTNL--TFGDVANKATLCSQRGFMEAVVAQLISAPE----ELLQVYASVLRNL----SWRADSNM----K 430 (2195)
T ss_pred HHHHHHHHHHhhcc--ccccccchhhhhhhhhHHHHHHHHHhcChH----HHHHHHHHHHHhc----cccccccH----H
Confidence 47899998888766 2332110 0234566666666644333 3466777888765 58775421 1
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC
Q 000941 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~ 457 (1215)
...+.+..+.....-.+..+++.+-.+.+++|..|..+.
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 112222333333333355555556667788888876543
No 239
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=87.49 E-value=26 Score=38.01 Aligned_cols=171 Identities=15% Similarity=0.248 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHHHHHHhhCc-------hhh-HHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCCCcCCCC
Q 000941 342 SWKVRRAAAKCLAALIVSRP-------EML-SKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNN 412 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~-------~~l-~~~~~~i~p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1215)
+|+.=+.+..+++.++...| ..+ .+.+..+...++..+ +=|+..+-..+..++..+++......
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~------- 132 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSN------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCC-------
Confidence 69988888999999985422 111 123344444444333 22333444455667777776553210
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhccc-Ch---hhHH-HHHH-HHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCc----
Q 000941 413 ELNPRWLLKQEVSKIVKSINRQLREK-SI---KTKV-GAFS-VLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---- 482 (1215)
Q Consensus 413 ~~~~~~~L~~~~p~i~~~l~~~L~~~-~~---~~r~-~~~~-~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~---- 482 (1215)
.+ .+.+.-..-++.+...+..+ .. .+|. +++. ++..+....+..-.+.++..+..+.+..+.+...
T Consensus 133 --~~--~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~ 208 (255)
T PF10350_consen 133 --NP--ELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDE 208 (255)
T ss_pred --Cc--hHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccccc
Confidence 01 22333333444444444444 11 2444 4443 4445555555432245555566666655544321
Q ss_pred --chhHHHHHHHHHHHhccCC-CCcchhhhhhhHHHHHHHhcCC
Q 000941 483 --SNLKIEALTFTRLVLSSHS-PPVFHPYIKALSSPVLAAVGER 523 (1215)
Q Consensus 483 --~~~~~~al~~l~~l~~~~~-~~~~~~~l~~l~p~l~~~l~d~ 523 (1215)
...++.|+++|+.++.... .....+|+...+-..+.++.++
T Consensus 209 ~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 209 KSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 2467889999999987632 2234456666655555555444
No 240
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=87.22 E-value=7.6 Score=44.78 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhch
Q 000941 1023 VLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFI 1102 (1215)
Q Consensus 1023 ~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~ 1102 (1215)
+..+...+..+|+.+.|+++.++|.|.+- + +....+...+|.||... .--.+.+++
T Consensus 183 LrvlS~Vye~~P~~i~PhlP~l~~lL~q~---~--------------------p~~~~ll~~l~~LI~Qk-~~evL~~ci 238 (851)
T KOG3723|consen 183 LRVLSAVYEKQPQPINPHLPELLALLSQL---E--------------------PEQYHLLRLLHVLIKQK-QLEVLQKCI 238 (851)
T ss_pred HHHHHHHHhcCCCccCcccHHHHHHhcCC---C--------------------HHHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 33455567899999999999999876531 1 12235666666666542 122366778
Q ss_pred HHHHhcccCC--cchhHhhHHHHHHHHHhhChhhHH---HhHHHhhHHHH
Q 000941 1103 VPYLKSGLED--HYDVKMPCHLILSKLADKCPSAVL---AVLDSLVDPLQ 1147 (1215)
Q Consensus 1103 ~~~~~~gl~D--~~di~~~~~~~l~~l~~~~p~~~~---~~l~~l~~~l~ 1147 (1215)
|.++..++| ..+|++. ++-++++..|..+. +.++.+..-+.
T Consensus 239 -P~L~g~l~ds~~~~i~~~---Ilk~ia~~~pv~l~~~~E~l~e~~~~~p 284 (851)
T KOG3723|consen 239 -PFLIGHLKDSTHNDIILN---ILKEIAVYEPVALNSFLEMLKEIGERFP 284 (851)
T ss_pred -HHHHHHhccccchhHHHH---HHHHHHhcCccchhhHHHHHHHHHHhCC
Confidence 889999998 4456644 45556666666444 45555544433
No 241
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.97 E-value=25 Score=40.10 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh----ccChhhHHHHHHHHHHHhc----CCCc--chhh-HHHHHH
Q 000941 40 DADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSEPRVVEMTDKLCIKLL----NGKD--QHRD-IASIAL 108 (1215)
Q Consensus 40 ~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~----~~~~~~~~~lv~~L~~~~~----~~~~--~~r~-~a~~aL 108 (1215)
+.+.-+.+++.+.+++.|+.+-||+.-..++|.... .-....+..+++.|.+.+. ++.. +... .+++++
T Consensus 55 ~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~ 134 (339)
T PF12074_consen 55 SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVL 134 (339)
T ss_pred CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHH
Confidence 334457889999999999999999999999998875 3344566777777777663 2211 1111 122222
Q ss_pred HHHHh-ccCchhhHHHHHH----------hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHh
Q 000941 109 KTIIA-EVTTSSLAQSIHT----------SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALL 176 (1215)
Q Consensus 109 ~~~i~-~~~~~~~~~~~~~----------~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~ll~~ll 176 (1215)
-.+.. ..+.......... .+-|+++..+. +.+...-.+.++..++..+.....+. ....-+.++
T Consensus 135 l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~----~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i 210 (339)
T PF12074_consen 135 LALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA----SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFI 210 (339)
T ss_pred HHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC----CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 11100 0100000000000 11245544432 23444555666666666665555433 355666777
Q ss_pred hhhcCC--hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhc
Q 000941 177 PQLSAN--QASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRS 219 (1215)
Q Consensus 177 ~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~ 219 (1215)
-.+-++ .+.+|+.|..++..+....+..+-..++..+.+-+..
T Consensus 211 ~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 211 YLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 777777 6799999999999888777665444455555555543
No 242
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.93 E-value=17 Score=40.83 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=106.9
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCC------ChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKA------DADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~------~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~ 79 (1215)
+-++|++. +.++|...-.+.-+...+..+.... ...........+++.++.++.-++..|.++++.++...+.
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 34677777 6666776666666666555543110 0011123778888999999999999999999999976555
Q ss_pred hhHH---HHHHHHHHHhcC----CCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhh-----hccCCChhHH
Q 000941 80 PRVV---EMTDKLCIKLLN----GKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGI-----TLKDMNTEIR 146 (1215)
Q Consensus 80 ~~~~---~lv~~L~~~~~~----~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l-----~~~~~~~~v~ 146 (1215)
..-. ..++.+++.+.+ ++.+...++..+|..+... +.+...++ ...++.+.+.+ .+........
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~---~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS---KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS---HHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc---chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 4433 666766666653 2334456777777777632 12222222 23444444444 1111123333
Q ss_pred HHHHHHHHHH--HHHhhhhhhhhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhc
Q 000941 147 CECLDILCDV--LHKFGNLMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRS 219 (1215)
Q Consensus 147 ~~al~~L~~l--~~~~g~~l~~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~ 219 (1215)
.+++-++=-+ -+.....+..+. +++.+...++.. ...|-+-++.++-.+.....+.. +..=+..+++.|..
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 3333332111 000111121111 666666666543 34666677888888887766432 22223455666666
Q ss_pred CCCChHHHHHHHH
Q 000941 220 KGAKPEMIRTNIQ 232 (1215)
Q Consensus 220 ~~~~~~~~~~~i~ 232 (1215)
.+|.++.-..-++
T Consensus 294 rk~~Dedl~edl~ 306 (312)
T PF03224_consen 294 RKWSDEDLTEDLE 306 (312)
T ss_dssp S--SSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 6664443333333
No 243
>PF05536 Neurochondrin: Neurochondrin
Probab=86.72 E-value=85 Score=38.25 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCch-hhHHHHHHhHhHHHHhhhhccC------CChhHHHHHHHHHHHHHH
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKD------MNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~-~~~~~~~~~l~p~L~~~l~~~~------~~~~v~~~al~~L~~l~~ 158 (1215)
+++....+...++..|=++..-+++++.+-+.. ...+.+.+.+=|+++..|-... +....+.-|+.+|+.++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 344444444444333444445555565543321 1122345555555554443210 134556667777777765
Q ss_pred Hhhhhhh--hhHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHH-HH--HHHHHHHHHHhhcCCCChHHHHHHHH
Q 000941 159 KFGNLMS--NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD-LL--AKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1215)
Q Consensus 159 ~~g~~l~--~~~~~ll~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~-~~--~~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1215)
.+.+. +..-..++.++..+.+.+. .+-.-+++||..++.+-... .+ ...++.+.+.+.+.. ...+.++.
T Consensus 87 --~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~ 161 (543)
T PF05536_consen 87 --DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALN 161 (543)
T ss_pred --ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHH
Confidence 33332 4566678888888877666 88899999999999543222 22 235667777766632 45778888
Q ss_pred HHHHHHhhhhhhh----ccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 233 MVGALSRAVGYRF----GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 233 ~l~~l~~~~~~~~----~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
++..++...+... ...+..+++.+-..... ...+.+=..+..+..|...+|
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~---~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSS---FHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhcCcCC
Confidence 8888887665322 23445555555544442 233344445666666666664
No 244
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=86.66 E-value=1.8 Score=39.27 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=54.3
Q ss_pred hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh-hcccHHHHHHHHHHHhcc
Q 000941 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSY 306 (1215)
Q Consensus 243 ~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~-~~~~l~~ii~~~l~~l~~ 306 (1215)
..+.||++.++.++...+. .-.+++|..++..+.-++.+||.+ +..+..++++-...++..
T Consensus 3 ~~l~p~~~~l~~~i~sAMT---Hi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMT---HISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHH---hCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 4578999999999999998 478999999999999999999998 788999999988888864
No 245
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=86.58 E-value=1.2e+02 Score=40.17 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=48.4
Q ss_pred hhhHHHHHHhhccch--hHHHHHHHHHHHHcCCCCCchhHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000941 601 PACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLHIDLTCVL--EHVIAELTAFLRKANRALRQATLGTMNSLVVAY 673 (1215)
Q Consensus 601 ~~~l~~L~~~L~~e~--~r~~a~~al~~i~~s~~~~~~~~~l--~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 673 (1215)
..||.+|+..|+.+. ...+++.+|.++....-.+ ..++ ...++.|..++.+.++.+-..+..+|..++..-
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D--Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED--QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH--HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 356677777776653 4567888888887432121 3333 457888999999888887777888888877554
No 246
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=86.31 E-value=85 Score=40.45 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=32.8
Q ss_pred chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc
Q 000941 248 HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 248 ~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
.+..++.+++..+.. ...-+|..+.++|+.|+.... +.-+..++..+.
T Consensus 586 ~~~vlveiLLslls~---~s~llR~~~~~vf~~~~~~~t-------~~~l~~ll~vl~ 633 (784)
T PF04931_consen 586 WSEVLVEILLSLLSQ---PSALLRKVSEQVFEAFCPHLT-------ESGLQLLLDVLD 633 (784)
T ss_pred HHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHhhcC-------HHHHHHHHHHhc
Confidence 366788888888873 566789999999988865433 344445555554
No 247
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.23 E-value=66 Score=36.55 Aligned_cols=290 Identities=16% Similarity=0.108 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHHHHhccCcccc-hhhhhHH---HHHHhhccchhHHHHHHHHHHHHcCC-CCCch--hHHHHHHHHH
Q 000941 574 DQEVKECAISCMGLVISTFGDNLGA-ELPACLP---VLVDRMGNEITRLTAVKAFAVIAASP-LHIDL--TCVLEHVIAE 646 (1215)
Q Consensus 574 ~~~Vr~~Ai~~lg~l~~~~~~~l~~-~~~~~l~---~L~~~L~~e~~r~~a~~al~~i~~s~-~~~~~--~~~l~~~l~~ 646 (1215)
+.-+-+.+.+.++.++......+.. .+.-.+. -++.+..+..++..++++|..+..-+ -...+ ..-+.-+++.
T Consensus 127 d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~ 206 (442)
T KOG2759|consen 127 DTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRI 206 (442)
T ss_pred ChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHH
Confidence 4445555666667666655433332 3333333 33444445567889999999887321 01000 1112233333
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcc-hHHHHHHHhhhhcCCCCh-hhHHHHHHHHHHHhhcccCCCc--hh
Q 000941 647 LTAFLRKANRALRQATLGTMNSLVVAYGDKIGAS-AYEVIIVELSTLISDSDL-HMTALALELCCTLMADKRSSPN--VG 722 (1215)
Q Consensus 647 L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~-~~~~~l~~l~~~l~~~d~-~~~~~al~~l~~l~~~~~~~p~--~~ 722 (1215)
+. -.+.+-++...++.|+..+.-+...+ .. ..-.+++.+...++++-. -+....+.++..++.. .|. ..
T Consensus 207 l~--s~~~~~QlQYqsifciWlLtFn~~~a--e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k---~~~~~~~ 279 (442)
T KOG2759|consen 207 LA--STKCGFQLQYQSIFCIWLLTFNPHAA--EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK---GPDRETK 279 (442)
T ss_pred Hh--ccCcchhHHHHHHHHHHHhhcCHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CchhhHH
Confidence 33 23456678888888888775332211 00 001234444444433211 2444556666666553 111 00
Q ss_pred h-----hhhhhhHHHHHHHhhhcccchhhhH-HHHHHHHHHHhhc--CCChHHHHHHHhccCCCCCCCcchhhhhhhhHH
Q 000941 723 L-----AVRNKVLPQALALIKSSLLQGQALV-ALQSFFAALVYSA--NTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIA 794 (1215)
Q Consensus 723 ~-----~~~~~~l~~l~~ll~s~~l~~~~l~-~l~~~~~~l~~~~--~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a 794 (1215)
. .+...+++.+ +.+...--+...+. .+..+-+.+.... -..|.++...+....-.- +|.+-.+.-...=+
T Consensus 280 k~~~~~mv~~~v~k~l-~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W-SP~Hk~e~FW~eNa 357 (442)
T KOG2759|consen 280 KDIASQMVLCKVLKTL-QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW-SPVHKSEKFWRENA 357 (442)
T ss_pred HHHHHHHHhcCchHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC-CccccccchHHHhH
Confidence 1 0111111211 22211111222221 1111112222211 123444444443221110 11110000000000
Q ss_pred HHHHHHHhhcCCcchhhHHHHHHHHhcCCCchh-hHHHHHHHhhhhccCCCCC--cc--chHHHHHHhcCCCchhHhhHH
Q 000941 795 QCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTN-SHLALLCLGEIGRRKDLSS--HE--HIENVIIESFQSPFEEIKSAA 869 (1215)
Q Consensus 795 ~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~lal~~lgei~~~~~~~~--~~--~l~~~ll~~l~~~~e~vR~aA 869 (1215)
.++ . . .--.++..++..++.+.++. -+.|++=+|+..|+.+-.- +. .-.+.+++++++++++||--|
T Consensus 358 ~rl-----n-e--nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 358 DRL-----N-E--NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred HHH-----h-h--ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 110 0 0 11246677777776654433 6789999999988874321 11 356778899999999999999
Q ss_pred HHHHHhhhhcC
Q 000941 870 SYALGNIAVGN 880 (1215)
Q Consensus 870 a~aLG~l~~~~ 880 (1215)
..|+-++...+
T Consensus 430 LlavQ~lm~~~ 440 (442)
T KOG2759|consen 430 LLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHhhc
Confidence 88887776554
No 248
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.64 E-value=74 Score=39.40 Aligned_cols=18 Identities=33% Similarity=0.065 Sum_probs=9.1
Q ss_pred chhHhhHHHHHHHhhhhc
Q 000941 862 FEEIKSAASYALGNIAVG 879 (1215)
Q Consensus 862 ~e~vR~aAa~aLG~l~~~ 879 (1215)
+++.+..+..|||+++..
T Consensus 459 ~~~~~~~~LkaLGN~g~~ 476 (574)
T smart00638 459 DEEEIQLYLKALGNAGHP 476 (574)
T ss_pred CchheeeHHHhhhccCCh
Confidence 344445555555555543
No 249
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=83.60 E-value=84 Score=35.50 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhhCc--------hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCC
Q 000941 343 WKVRRAAAKCLAALIVSRP--------EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~--------~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1215)
|..|+.++..+..++...+ +++......++..|+.....++- +-..+.++|.....
T Consensus 90 fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di------al~~g~mlRec~k~---------- 153 (335)
T PF08569_consen 90 FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI------ALNCGDMLRECIKH---------- 153 (335)
T ss_dssp HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT------HHHHHHHHHHHTTS----------
T ss_pred CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc------cchHHHHHHHHHhh----------
Confidence 5678888888888875542 22333335566677766654432 22334454432110
Q ss_pred ChhhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh----hhhhhhhhhHHHHHhhcCCCCcchhHHH
Q 000941 415 NPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC----LADHIGSLIPGIEKSLNDKSSTSNLKIE 488 (1215)
Q Consensus 415 ~~~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~----l~~~~~~lv~~l~~~l~d~~~~~~~~~~ 488 (1215)
+ .+..++ ++.+..+.+....++-.+...|+.+|..+...++.. +..+.+.++......+...+ .-.|-.
T Consensus 154 -e--~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--Yvtkrq 228 (335)
T PF08569_consen 154 -E--SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKRQ 228 (335)
T ss_dssp -H--HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHHH
T ss_pred -H--HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeehh
Confidence 0 111111 334445666666777788889999999988877653 45577778887777776544 445778
Q ss_pred HHHHHHHHhccCCC-Ccchhhh--hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000941 489 ALTFTRLVLSSHSP-PVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1215)
Q Consensus 489 al~~l~~l~~~~~~-~~~~~~l--~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1215)
++.+|+.++....- ..+..|+ +.-+..+...+.|+...++.+|+.++--++.+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999865321 1223343 34566777788899999999999999888754
No 250
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.19 E-value=1.8e+02 Score=39.00 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=82.9
Q ss_pred CccHHHHHHHHHHHHHHHhh--CchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChh
Q 000941 340 DASWKVRRAAAKCLAALIVS--RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1215)
Q Consensus 340 d~swkvR~~Aa~~L~~li~~--~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 417 (1215)
+.+|+||-+..+-+.+++-. ++ ....-.+.+-..+.+.+.|.+-.||..+..++..+++...-
T Consensus 1538 ~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~-------------- 1602 (1710)
T KOG1851|consen 1538 SSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF-------------- 1602 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc--------------
Confidence 35799999998888876632 33 11222233334444556888888999999999999874320
Q ss_pred hHHHHHHHHHHHHHHHHhcc--cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHH
Q 000941 418 WLLKQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRL 495 (1215)
Q Consensus 418 ~~L~~~~p~i~~~l~~~L~~--~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~ 495 (1215)
...+...+...+.... +......+|+-.|++++-.+|-.+...++..+..+....+++ ..++..+-..++.
T Consensus 1603 ----~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~---~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1603 ----QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES---AAIKQTVKKTVSE 1675 (1710)
T ss_pred ----ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc---hHHHHHHHHHHHH
Confidence 1111112222222222 223356788999999999888766556666555555544443 3455555566666
Q ss_pred HhccCC
Q 000941 496 VLSSHS 501 (1215)
Q Consensus 496 l~~~~~ 501 (1215)
+=+.|.
T Consensus 1676 Frrth~ 1681 (1710)
T KOG1851|consen 1676 FRRTHA 1681 (1710)
T ss_pred HHHHhh
Confidence 655553
No 251
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.17 E-value=4.9 Score=41.27 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~ 78 (1215)
..+..+++-..+.|..+|..|+.-+...+..+-.+. ...++.++.+..||++.+|+.|.+++..+..|.+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 456677777788888899988888777766554432 4678888888889999999999888888776543
No 252
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=83.03 E-value=5.3 Score=51.17 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh
Q 000941 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1215)
..-+++.++..+..++. -.|..+-+.|+.++...
T Consensus 587 ~~vlveiLLslls~~s~--llR~~~~~vf~~~~~~~ 620 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPSA--LLRKVSEQVFEAFCPHL 620 (784)
T ss_pred HHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHhhc
Confidence 44566666676666553 56777777777776443
No 253
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.45 E-value=91 Score=35.06 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh---hhh----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH---HHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLM---SND----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA---KATI 211 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l---~~~----~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~---~l~~ 211 (1215)
+.++....+..+++++..-+... ... .+.....++..+++++..++..|+..++.++...+..... ..++
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~ 149 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALP 149 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 57788888888888888765322 111 1225667777888888999999999999999887665443 6777
Q ss_pred HHHHHhhcCCC--ChHHHHHHHHHHHHHHhhhhhh--hccchhhhHHHHHHhh
Q 000941 212 EVVRNLRSKGA--KPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLIDYC 260 (1215)
Q Consensus 212 ~ll~~l~~~~~--~~~~~~~~i~~l~~l~~~~~~~--~~~~l~~iip~ll~~~ 260 (1215)
.+++.+.+... +.+.+..++++++.+.+.-..| |.. ...++.+.+.+
T Consensus 150 ~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 150 KLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 78777765322 1234578899999999865432 222 44555555554
No 254
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.98 E-value=61 Score=37.27 Aligned_cols=209 Identities=19% Similarity=0.203 Sum_probs=120.7
Q ss_pred hcCCCchhHhhHHHHHHHhhhh----------cCcccchHHHHHHhhcccch---hHHHHHHHHHHHhhccccchhhhhH
Q 000941 857 SFQSPFEEIKSAASYALGNIAV----------GNLSKFLPFILDQIDNQQKK---QYLLLHSLKEVIVRQSVDKAEFQDS 923 (1215)
Q Consensus 857 ~l~~~~e~vR~aAa~aLG~l~~----------~~~~~~lp~il~~l~~~~~~---~~~~l~alke~i~~~~~~~~~~~~~ 923 (1215)
.+-+++.+||.++...+=-+.. -+... .|...+..+.+. |..++.=+|.++...+. ...+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~--~~~~-- 105 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLEIKKG--PKEI-- 105 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHHhcCC--cccC--
Confidence 3434458898888766543332 12222 234444444322 44444444555544210 1122
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCCc-----chHHHHHhhcCCCcchhHHHhhhhHhhhcCCCc-h--
Q 000941 924 SVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAK-----LVPALKVRTTSSAAFTRATVVIAIKYSIVERPE-K-- 995 (1215)
Q Consensus 924 ~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~-----~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~-~-- 995 (1215)
-..+...+....+++++..|+.+.++|..++..+|+- =+..+.+.+.+.+...-..++.++=|+++.... .
T Consensus 106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 2334445555556677889999999999999999872 234444444444444667788888888876532 0
Q ss_pred -hhhhhhHhHHHHHHh----ccCCC-hHHHHHHHHHHHHHHhcCcccccchhh--hhhHHHHHHhhcccccceeeeccCc
Q 000941 996 -IDEIIFPEISSFLML----IKDQD-RHVRRAAVLALSTFAHNKPNLIKGLLP--ELLPLLYDQTIVKKELIRTVDLGPF 1067 (1215)
Q Consensus 996 -~~~~l~~~i~~~l~~----l~D~d-~~Vr~~a~~~L~~~~~~~p~~i~~~l~--~llp~l~~~~~~~~~lir~v~mgpf 1067 (1215)
.+-.+..++.+|... ..+.. .+.-+.+..++.++..+-|.++.=-.+ +-+..|..-+.+
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~------------- 251 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL------------- 251 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC-------------
Confidence 011244455555543 22222 135567777888888998888632222 355555555543
Q ss_pred eeecccChhHHHHHHHHHHHHHhh
Q 000941 1068 KHTVDDGLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1068 kh~~Ddgl~~Rk~A~~~l~~ll~~ 1091 (1215)
...++|+..++.++.++..
T Consensus 252 -----p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 252 -----PNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred -----CCHHHHHHHHHHHHHHHCC
Confidence 2346999999999999875
No 255
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.86 E-value=2.9 Score=37.88 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=48.3
Q ss_pred chhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc
Q 000941 458 PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 521 (1215)
Q Consensus 458 ~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 521 (1215)
|+.+.+|++.++..+..++.+-. +++|.+++.++..+++.++...+..+..++++.....++
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~--~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHIS--PDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCC--HHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 34578899999999999998755 899999999999999987654344566666666665554
No 256
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.36 E-value=80 Score=33.72 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhc
Q 000941 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1215)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~ 290 (1215)
+.++..+.+... ++.....+.++..++. +++ ...+.++..+..... ....+.+-.+.+.+..+....+..+
T Consensus 3 ~~L~~~l~~~~~-~~~~~~~L~~L~~l~~---~~~-~~~~~v~~~L~~L~~---~~~~~~~~~~~rLl~~lw~~~~r~f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISD-PELQLPLLEALPSLAC---HKN-VCVPPVLQTLVSLVE---QGSLELRYVALRLLTLLWKANDRHF- 73 (234)
T ss_pred HHHHHHhcCCCC-hHHHHHHHHHHHHHhc---cCc-cchhHHHHHHHHHHc---CCchhHHHHHHHHHHHHHHhCchHH-
Confidence 344444444332 3455555666666655 333 555666666555444 2444555556666666666655444
Q ss_pred ccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHH
Q 000941 291 SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEE 370 (1215)
Q Consensus 291 ~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~ 370 (1215)
|++..++......+.. .. -+++..|.+.-+.+.++..+...+|+. ...
T Consensus 74 ~~L~~~L~~~~~r~~~-~~---------------------------~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ 121 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPS-SF---------------------------SSKDEFWECLISIAASIRDICCSRPDH----GVD 121 (234)
T ss_pred HHHHHHHHHHHhhccc-cc---------------------------CCCcchHHHHHHHHHHHHHHHHhChhh----HHH
Confidence 4554444332111110 00 011234777777777888888888873 334
Q ss_pred HHHHHHhhh-cccchhHHHHHHHHHHHHHHH
Q 000941 371 ACPKLIDRF-KEREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 371 i~p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
+++.+..-+ ++.++.++.-+++++..+++.
T Consensus 122 ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 122 LLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 555555556 677788898899999999865
No 257
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.00 E-value=1.1e+02 Score=35.16 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh----hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD----HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~----~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
....+.+...+-+.+..+|.+|+.++..++.... .+.. +++- .+..+|...+....-|.+|+.+++.+++..
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 3444444444433447799999999998875421 1211 2222 334455433333456889999999998764
Q ss_pred C-CCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 501 S-PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 501 ~-~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
+ +..+ -..++.+++...++..-+.+..++.++.+++
T Consensus 100 ~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~ 136 (371)
T PF14664_consen 100 KGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELA 136 (371)
T ss_pred CCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 3 2222 3456666666666666677777888877775
No 258
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.04 E-value=18 Score=45.08 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHH
Q 000941 225 EMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1215)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~ 303 (1215)
..|..++.+++.+++.-|..+..-+ ..+++-++.++.. |.+.-+-..|+.++..++-.+|..+.+|+++++.+..+.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~--D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF--DTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh--cccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4678899999999998765543333 2567788888875 566677788999999999999999999999999999888
Q ss_pred hccC
Q 000941 304 LSYD 307 (1215)
Q Consensus 304 l~~d 307 (1215)
+.++
T Consensus 161 ~~W~ 164 (668)
T PF04388_consen 161 LSWE 164 (668)
T ss_pred HHcc
Confidence 7654
No 259
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.29 E-value=8.3 Score=35.70 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000941 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1215)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1215)
.|++.|.... ++.+..-||.=+|++++.++..-. -..-..-..+|..+.++++.||+.|+.|+..+..
T Consensus 47 ~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 47 KLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4444443322 456666788888999888755321 0223356778889999999999999999987764
No 260
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=2.3e+02 Score=38.08 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=118.8
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 375 Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
+++.+..+++..|..+.+.+..++.+... + .+...+|.......+...+.+..+|.....++..+.
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~------------e--~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~ 111 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDT------------E--ELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLL 111 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccc------------h--HHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 33445667888999999999888875321 1 233345555566667778888899999999999999
Q ss_pred HhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC-CCcchhhhhhhHHHHHHH--------------
Q 000941 455 VVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS-PPVFHPYIKALSSPVLAA-------------- 519 (1215)
Q Consensus 455 ~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~l~~l~p~l~~~-------------- 519 (1215)
......+++|+..++|....+--|.. ..+...|...+........ +..+.-+-+.|.+.+.+-
T Consensus 112 t~lkk~lsp~LK~li~~wl~~~~d~~--~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~ 189 (1312)
T KOG0803|consen 112 TKLKKKLSPFLKSLIPPWLGGQFDLD--YPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRT 189 (1312)
T ss_pred HHHHHHhhHHHHhhhhhhhheecccc--hHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhh
Confidence 99888899999999999887766543 3444444444443332100 001101112222222221
Q ss_pred -----hcCCchHHHHHHHHHHHHHHHhccCCCcCC--CCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 000941 520 -----VGERYYKVTAEALRVCGELVRVLRPSVEGL--GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1215)
Q Consensus 520 -----l~d~~~~v~~~al~~l~~l~~~~~~~~~~~--~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~ 592 (1215)
++.+++++...++.++..+.+..++..+-. ...++.++. -..+...++ ...+.+|.+...++-.++...
T Consensus 190 ~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s--~~~fWk~~~--~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 190 LSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLS--SEKFWKLLK--SKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhh--HHHHHHHhc--CCCcchhHHHHHHHHHHHhhh
Confidence 123466888899988888886655432100 111221111 111222222 445678888888887777665
Q ss_pred cCc
Q 000941 593 GDN 595 (1215)
Q Consensus 593 ~~~ 595 (1215)
...
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 443
No 261
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=78.00 E-value=3 Score=30.39 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHh
Q 000941 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1215)
Q Consensus 46 ~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~ 74 (1215)
..++.|+++|++++.+||..|+-+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 262
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.92 E-value=12 Score=37.92 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
+..+++.+..++...+. .-+-.+-+-+..+....|.++.|.|+++|..+-..+.. -|.|+...++++++.++...
T Consensus 112 y~~yLp~F~dGL~e~~h--pyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~t---rd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDH--PYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVT---RDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred chHHHHHHhhhhhhcCC--CcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhc
Confidence 45567777777765443 23345566777777888899999999999999998884 68899999999999997764
Q ss_pred ---hhhhcccHHHHHHHHHHH
Q 000941 286 ---PRDISSYCDEILHLTLEY 303 (1215)
Q Consensus 286 ---~~~~~~~l~~ii~~~l~~ 303 (1215)
+..+.||..++++.+--+
T Consensus 187 ~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred cccchhhhhHHHHhhhhhhhh
Confidence 467889999999987543
No 263
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.86 E-value=2.3e+02 Score=36.84 Aligned_cols=212 Identities=15% Similarity=0.180 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHhhh-h-h-hh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH--HHHHHHHHHh
Q 000941 144 EIRCECLDILCDVLHKFGN-L-M-SN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA--KATIEVVRNL 217 (1215)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~-~-l-~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~--~l~~~ll~~l 217 (1215)
.++..-+..+..++...+. . + .. ..+.++.++...-.++-..+|..|-.+.-.+..++-+..++ .-....-..+
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl 249 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL 249 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3566667777777777655 2 2 22 35666666655555544578887766665555443222111 0000011111
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhh---cccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH
Q 000941 218 RSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYC---TSASENDEELREYSLQALESFLLRCPRDISSYCD 294 (1215)
Q Consensus 218 ~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~---~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~ 294 (1215)
.....+....+..+..+...-... .+...-+..+|..+...+ ... |-++++|-.|.+.++-|+..+|..|-.
T Consensus 250 eaEr~k~r~~rarle~Ll~~r~et-qe~~d~i~~mi~~if~sVFVHRYR-DV~~~IRaiCiqeLgiWi~~yP~~Fl~--- 324 (1048)
T KOG2011|consen 250 EAERNKSRGNRARLESLLMLRKET-QEQQDEIESMINDIFDSVFVHRYR-DVDPDIRAICIQELGIWIKSYPEIFLS--- 324 (1048)
T ss_pred HHHhcccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhheeeeecc-cCchHHHHHHHHHHHHHHHhccHHHhc---
Confidence 110000111222222222221111 122223444555554432 111 678999999999999999999964421
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc--hhhHHHHHHHH
Q 000941 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EMLSKLYEEAC 372 (1215)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~--~~l~~~~~~i~ 372 (1215)
...++|+.. .= .|-+-.||+...++|..+....- ..+..+.+.+-
T Consensus 325 ---dsYLKYiGW----tL--------------------------sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 325 ---DSYLKYIGW----TL--------------------------SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred ---chHHHHhcc----ee--------------------------ecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 123444421 10 01112799999999999988732 33444444444
Q ss_pred HHHHhhh-cccchhHHHHHHHH
Q 000941 373 PKLIDRF-KEREENVKMDVFNT 393 (1215)
Q Consensus 373 p~Li~~~-~d~e~~Vr~~~~~~ 393 (1215)
.-+++.. +|.+..||...+..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHH
Confidence 4444443 56667777654433
No 264
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=77.37 E-value=1.6e+02 Score=36.53 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=76.1
Q ss_pred HHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC--C
Q 000941 607 LVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLE-------HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK--I 677 (1215)
Q Consensus 607 L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~-------~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~--~ 677 (1215)
++...+|..|-.++..+|-++....- ....|+. ..++.|..+|+..+..+-.++..+|..+....... +
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~--~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li 603 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLW--TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI 603 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCC--cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence 34455677788889999998874321 1133333 34578899999888888888888888887554321 3
Q ss_pred CcchHHHHHHHhhhhcC--CCChhhHHHHHHHHHHHhhcccCCCchhhh-hhhhhHHHHHHHhhhc
Q 000941 678 GASAYEVIIVELSTLIS--DSDLHMTALALELCCTLMADKRSSPNVGLA-VRNKVLPQALALIKSS 740 (1215)
Q Consensus 678 ~~~~~~~~l~~l~~~l~--~~d~~~~~~al~~l~~l~~~~~~~p~~~~~-~~~~~l~~l~~ll~s~ 740 (1215)
....+..++..|...-. ..+-++...+..++..++.. .+..... ....-++.++.+.++.
T Consensus 604 gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~---~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 604 GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK---NVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH---hHHHHHHHHhccChHHHHHHhccc
Confidence 33344445554433322 12345566777777777753 2222222 2334566777666653
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.15 E-value=79 Score=34.32 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=60.9
Q ss_pred HHHHHHHHhCchhh-hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchH
Q 000941 448 SVLRELVVVLPDCL-ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYK 526 (1215)
Q Consensus 448 ~~l~~L~~~~~~~l-~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~ 526 (1215)
..+..++..+-..+ .+|-.+++..+...+.+.. +.++..++..+..++...... .|+.+.++.++.+.++..++
T Consensus 168 dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~--~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~- 242 (262)
T PF14225_consen 168 DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGP--PWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW- 242 (262)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH-
Confidence 34444444443333 3455666777777776543 678999999999999765432 55888899999999987655
Q ss_pred HHHHHHHHHHHHHHhc
Q 000941 527 VTAEALRVCGELVRVL 542 (1215)
Q Consensus 527 v~~~al~~l~~l~~~~ 542 (1215)
.+|+.++...+..-
T Consensus 243 --~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 243 --MEALEVLDEIVTRS 256 (262)
T ss_pred --HHHHHHHHHHHhhc
Confidence 57888887776543
No 266
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=77.01 E-value=15 Score=37.67 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=62.0
Q ss_pred cchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccch
Q 000941 961 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGL 1040 (1215)
Q Consensus 961 ~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~ 1040 (1215)
.|++.+.+...+++...|..++..++.++..+-- .| ..|+|.++....|++..+|..|...+..+....|+.+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--Ch--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4666677766677777888888888777765531 11 3578999988889999999999999999999999988776
Q ss_pred hhhhh
Q 000941 1041 LPELL 1045 (1215)
Q Consensus 1041 l~~ll 1045 (1215)
+.+-+
T Consensus 84 ~~~gi 88 (187)
T PF12830_consen 84 YSEGI 88 (187)
T ss_pred HHHHH
Confidence 65533
No 267
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=82 Score=42.17 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCcccc-hhhhhHHHHHHhh-----------ccc---hhHHHHHHHHHHHHcCCCCCch
Q 000941 572 DQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDRM-----------GNE---ITRLTAVKAFAVIAASPLHIDL 636 (1215)
Q Consensus 572 d~~~~Vr~~Ai~~lg~l~~~~~~~l~~-~~~~~l~~L~~~L-----------~~e---~~r~~a~~al~~i~~s~~~~~~ 636 (1215)
+.+.+||-+++..+=.+....|+.+.+ ....++.++.... +++ +|..-|++++-.+... .-..+
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~-~~~~l 1263 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQ-FFKQL 1263 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 567899999999999999999887775 4444444333221 111 2334455555555421 01123
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcC
Q 000941 637 TCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS 694 (1215)
Q Consensus 637 ~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 694 (1215)
...++.++..|..+++++|..+-.....|+-.++...+..+.....+++...+..+..
T Consensus 1264 ~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1264 NNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 5667788888888889999999999999999999999998988777888777665543
No 268
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=76.67 E-value=1e+02 Score=32.37 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=69.8
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccChh-hHHHH
Q 000941 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEP-RVVEM 85 (1215)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~~-~~~~l 85 (1215)
.+..++.+.|+..|--|+..|.+.|.+.+...++....++-..|+=++= ..-+.||..-+..|+.++..++.. .....
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Confidence 5677899999999999999999999886655477788888888886663 456789999999999999887775 55566
Q ss_pred HHHHHHHhc
Q 000941 86 TDKLCIKLL 94 (1215)
Q Consensus 86 v~~L~~~~~ 94 (1215)
+...+..+.
T Consensus 84 ~~~f~~tm~ 92 (217)
T PF05997_consen 84 LKAFWETMR 92 (217)
T ss_pred HHHHHHHHH
Confidence 666666654
No 269
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=76.38 E-value=10 Score=36.70 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcC
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~ 95 (1215)
..+.+-+.++.+|.+++++||..|.+||-. ++.+.+.++-+.|.+.+.+
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcCc
Confidence 345677888899999999999999999975 3455777888888877744
No 270
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=76.20 E-value=1.4e+02 Score=33.64 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1215)
+.-.+.-+....+.+..||+.|+..|..++.-
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 34445556777888899999999999988864
No 271
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.13 E-value=8.8 Score=37.48 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=47.2
Q ss_pred ChhcHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHHHHhccCcccch-hhhhHHHHHHhhccchhHHHHHHHH
Q 000941 553 FKPYVQPIYNAIMSRLTNQDQD--QEVKECAISCMGLVISTFGDNLGAE-LPACLPVLVDRMGNEITRLTAVKAF 624 (1215)
Q Consensus 553 ~~~~l~~l~~~l~~~l~~~d~~--~~Vr~~Ai~~lg~l~~~~~~~l~~~-~~~~l~~L~~~L~~e~~r~~a~~al 624 (1215)
+....+.++..+.+.+...... .++...++.|++.++...+- ... -..+++.+.+.++++.++..|+.+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~--~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI--ELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H--HHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH--HHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3344556666666666543322 78899999999988874422 111 1347888888888988898888875
No 272
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=75.89 E-value=63 Score=33.38 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA 222 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~ 222 (1215)
...-.+.+.+++.+.+++|..-.+....++..+-+.-.+++-..|+.+-.|+|..+..+|.+.+-+++|--+.. ++.
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~---~~~ 90 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN---ADD 90 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC---CCc
Confidence 34666788889999999998877778888888877777767789999999999999999998765566533221 111
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc-----CCCcHHHHH---HHHHHHHHHHHhC--hhhhccc
Q 000941 223 KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA-----SENDEELRE---YSLQALESFLLRC--PRDISSY 292 (1215)
Q Consensus 223 ~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~-----~~~d~elre---~al~~l~~l~~~~--~~~~~~~ 292 (1215)
....|.-.+-.+-.-.. +.++.-|...++|..-..-+.. ..+..+.|. ...|.++-+-..| |.++...
T Consensus 91 ~~~~raWLLPlLr~~i~--~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~ 168 (198)
T PF08161_consen 91 SQPGRAWLLPLLRDHIR--NASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAES 168 (198)
T ss_pred CCcccchhHHHHHHhcc--CCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHH
Confidence 11222222333332222 2344445555666554322211 011222221 1223333333333 5566555
Q ss_pred HHHHHHHHHHHhc
Q 000941 293 CDEILHLTLEYLS 305 (1215)
Q Consensus 293 l~~ii~~~l~~l~ 305 (1215)
++.+...+.+.+.
T Consensus 169 F~~~a~~L~~~L~ 181 (198)
T PF08161_consen 169 FPSFAKLLGNALY 181 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 5777777766664
No 273
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=75.76 E-value=1.5e+02 Score=33.82 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=99.2
Q ss_pred HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC--------------hHHHHHHHHHH
Q 000941 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--------------QASVRKKSVSC 193 (1215)
Q Consensus 128 l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~--------------~~~vrk~a~~~ 193 (1215)
.+..+++.|+.+. +|+|-...+.-|...+.+-.-......+.+...+...+.+. +..+......+
T Consensus 142 ~~~~il~~L~~e~-dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 142 WFSVILQCLEHET-DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHhcCC-CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 3345555565544 78877777776666666544333333555555555543321 23466667777
Q ss_pred HHHHHhhc---CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHH
Q 000941 194 IASLASSL---SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1215)
Q Consensus 194 l~~l~~~~---~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el 270 (1215)
|+.+..|- ++..-++++..+..++.+. ..+.+|.++.-.+...|..+.++++.++..+-+... ...+
T Consensus 221 Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~-----~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t-----t~~~ 290 (356)
T PF03542_consen 221 LSALISYHSHFSKQEQDEIVRALESGLGSK-----TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST-----TPNM 290 (356)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-----chhh
Confidence 77777653 3444567888888887642 235678888888888888888888888766644332 2223
Q ss_pred HHHHHHHHHHHHHhCh-hhhcc----cHHHHHHHHHHHhc
Q 000941 271 REYSLQALESFLLRCP-RDISS----YCDEILHLTLEYLS 305 (1215)
Q Consensus 271 re~al~~l~~l~~~~~-~~~~~----~l~~ii~~~l~~l~ 305 (1215)
.-..++.|..++ +.| .-... ....++.++++|++
T Consensus 291 Ai~ILEFLs~L~-~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 291 AIHILEFLSSLS-RLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred HHHHHHHHHHHh-hCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 333444444443 456 43333 33577888888874
No 274
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.63 E-value=3e+02 Score=37.11 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred chhhHHHHHhhhccccCCCcchHHHHHhh---cCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHH
Q 000941 942 GVRNVVAECLGKIALIEPAKLVPALKVRT---TSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHV 1018 (1215)
Q Consensus 942 ~~r~~aae~Lg~l~~~~~~~~lp~l~~~l---~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~V 1018 (1215)
.+-...+-|+++.+..+++.+-|.+++.+ .+.++..|+.++..++..++..++.+-..+...+|.+-+.+.|.+.+|
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 35567888999999999887888888865 455668999999999999999998888888888888878999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 000941 1019 RRAAVLALSTFAHNK 1033 (1215)
Q Consensus 1019 r~~a~~~L~~~~~~~ 1033 (1215)
...+...+..+=+.-
T Consensus 1599 e~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVL 1613 (1621)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999987666544433
No 275
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=75.14 E-value=2.1e+02 Score=35.17 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHH--------------HHHHHHHHHHHHHhhcCH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQAS--------------VRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~--------------vrk~a~~~l~~l~~~~~~ 203 (1215)
+.+...-+..++.|+...|. |.+.++..+...+..+... +..+.-.+|..+...+|.
T Consensus 88 ~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 88 EDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GG
T ss_pred HHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 44555555566666555555 4556666666655543322 334556666666655544
No 276
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.71 E-value=4.7 Score=29.37 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=25.9
Q ss_pred chHHHHHHhcCCCchhHhhHHHHHHHhhh
Q 000941 849 HIENVIIESFQSPFEEIKSAASYALGNIA 877 (1215)
Q Consensus 849 ~l~~~ll~~l~~~~e~vR~aAa~aLG~l~ 877 (1215)
...+.+++++.+++++++..|+.|||+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999876
No 277
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=73.85 E-value=35 Score=33.71 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHhcCCCcchhhhhHHHHHHHhcccc--CCCChHHHHHHHHHHHHhcc
Q 000941 1 MANLQMAAILEKITGKDKDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLD 56 (1215)
Q Consensus 1 ~~~~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~i~~~ll~~L~ 56 (1215)
|+...+..++..+.|.----|--|+.+|...+.++. ..++......+.+.|++++.
T Consensus 1 M~~~~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 1 MSTLDINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred CccchHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 888999999999999888889999999999888764 55555666666666666554
No 278
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=73.65 E-value=12 Score=33.13 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChH--HHHHHHHHHHHHHHh
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA--SVRKKSVSCIASLAS 199 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~--~vrk~a~~~l~~l~~ 199 (1215)
++..|..|-.+|+.++.+|+..-..-.+.+...+...+.|++. ...-.|+.+|..++.
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999987666678888899988887654 678889999988864
No 279
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=73.13 E-value=7.8 Score=32.86 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=37.5
Q ss_pred HHHHHh--cCCCcchhhhhHHHHHHHhccccC--------CCChHHHHHHHHHHHHhc
Q 000941 8 AILEKI--TGKDKDFRYMATSDLLNELNKESF--------KADADLEVKLSNIVVQQL 55 (1215)
Q Consensus 8 ~ll~~~--~~~d~d~R~mAl~dL~~~l~~~~~--------~~~~~~~~~i~~~ll~~L 55 (1215)
.++.-+ .+.|+.+|++|+.-|++.+.+.|. .++++....|...++.+|
T Consensus 18 ~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 18 YLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 344444 556899999999999999999876 778777777777777765
No 280
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.94 E-value=4.8 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=30.5
Q ss_pred HHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 000941 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNT 393 (1215)
Q Consensus 351 ~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~ 393 (1215)
++++.++...|..+. .+.+...+..++.|....||..+++.
T Consensus 1 k~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 356777777776554 23567778888999999999988754
No 281
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=72.80 E-value=64 Score=31.81 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHH
Q 000941 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRS------KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLID 258 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~------~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~ 258 (1215)
.+-..++.|+-.++.-+++..|.++.-.+++=-.. ...+...+-+....+..+++....-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888998999889998887777777654322 121112233456788888888888899999999888777
Q ss_pred hhc
Q 000941 259 YCT 261 (1215)
Q Consensus 259 ~~~ 261 (1215)
.++
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 665
No 282
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=71.19 E-value=47 Score=32.93 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=79.0
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~----~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
.|=|.|+.+|+. .+++...+.+|+.+..+....+- ..++.+.+.++..-. .--++|...+..|.....
T Consensus 3 eikplLIsCL~~----q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~----~e~~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 3 EIKPLLISCLTM----QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE----NEPVKAFHIFICLPMPLY 74 (174)
T ss_pred chHHHHHHHHHh----hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc----cchHHHHHHHHhCCchhh
Confidence 355677777765 34667778888888888777653 235666666655332 122678888888873334
Q ss_pred HHH----HHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhh---hhhhh-ccchhhhHHHHHHhhccc-CCCcH-HHH
Q 000941 203 DDL----LAKATIEVVRNLRSKGA-KPEMIRTNIQMVGALSRA---VGYRF-GPHLGDTVPVLIDYCTSA-SENDE-ELR 271 (1215)
Q Consensus 203 ~~~----~~~l~~~ll~~l~~~~~-~~~~~~~~i~~l~~l~~~---~~~~~-~~~l~~iip~ll~~~~~~-~~~d~-elr 271 (1215)
++. ++.+.+.+.+.|.+|.. +.+..-.|++ +.++.. ..... ..++..++|.+++....- +-+.+ +.-
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~--~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l 152 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALT--GAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFL 152 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 443 45566666677766643 1121222222 222211 11111 345666777766555411 01222 443
Q ss_pred HHHHHHHHHHHHh
Q 000941 272 EYSLQALESFLLR 284 (1215)
Q Consensus 272 e~al~~l~~l~~~ 284 (1215)
..+++-++.++..
T Consensus 153 ~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 153 RRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHH
Confidence 4466666666553
No 283
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.12 E-value=3e+02 Score=35.81 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHhhc-cCCccchhhHHHHHhhhccccCCCcchH-----HHHHhhcCCCcchhHHHhhhhHhhhcCCC
Q 000941 920 FQDSSVEKILNLLFNHC-ESEEEGVRNVVAECLGKIALIEPAKLVP-----ALKVRTTSSAAFTRATVVIAIKYSIVERP 993 (1215)
Q Consensus 920 ~~~~~~~~i~~~L~~~~-~~~~e~~r~~aae~Lg~l~~~~~~~~lp-----~l~~~l~~~~~~~R~~~i~~lk~~i~~~~ 993 (1215)
.+..++..|+..+|-|- .+-+.++|..+.+-||-=+..-|+.|+. ++.=.+.+.+..+|-.++.++.+++....
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~ 358 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDE 358 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccc
Confidence 45556667777666553 2445788988888888888777876543 33334689999999999999999998732
Q ss_pred c--hhhhhhhHhHHHHHHhc-cCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceee
Q 000941 994 E--KIDEIIFPEISSFLMLI-KDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHT 1070 (1215)
Q Consensus 994 ~--~~~~~l~~~i~~~l~~l-~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~ 1070 (1215)
. ....+..-+=.+++.+. .|-+..||-+.+..+....+ ..-+--.-+..+++.+|+
T Consensus 359 ~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~-~g~L~d~di~~Vy~Li~d-------------------- 417 (1048)
T KOG2011|consen 359 DKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS-SGLLSDKDILIVYSLIYD-------------------- 417 (1048)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc-ccccChhHHHHHHHHHhc--------------------
Confidence 1 22222333333455554 46677898887766555332 122222334445565553
Q ss_pred cccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCCcchhHhhHHHHHHHHHhhChhhHHHhHHH
Q 000941 1071 VDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDS 1141 (1215)
Q Consensus 1071 ~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D~~di~~~~~~~l~~l~~~~p~~~~~~l~~ 1141 (1215)
..-++|++|.+.+|.-+.....+. ...............+.++.++...+.--.+.|-..+...+..
T Consensus 418 --~~r~~~~aa~~fl~~k~~~~~a~~--e~~~~~~~~~~~~~~~~l~~lv~~fi~~~l~~~~~ylv~~l~d 484 (1048)
T KOG2011|consen 418 --SNRRVAVAAGEFLYKKLFERVANS--ERVGAEKSLLKAENRELLPLLVSFFEESELHQHAAYLVDSLFD 484 (1048)
T ss_pred --cCcchHHHHHHHHHHHhhccccch--hhhccccccccccccchHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 234577888888887765531111 1111001111122356677777666555555555555543333
No 284
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=70.73 E-value=1.4e+02 Score=36.41 Aligned_cols=234 Identities=19% Similarity=0.266 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHhhcccc-chhhhhHHHHHHHHHHHhhccCCcc--------ch----hhHHHHHhhhccccCC----Cc
Q 000941 899 QYLLLHSLKEVIVRQSVD-KAEFQDSSVEKILNLLFNHCESEEE--------GV----RNVVAECLGKIALIEP----AK 961 (1215)
Q Consensus 899 ~~~~l~alke~i~~~~~~-~~~~~~~~~~~i~~~L~~~~~~~~e--------~~----r~~aae~Lg~l~~~~~----~~ 961 (1215)
-|.++.+|-|++...+.. ..+.+ .+.+-+..|+.....|. .+ -+..|+.||.|.-... +.
T Consensus 9 ~yI~CrvLieil~q~~~~~l~~~l---~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdR 85 (552)
T PF14222_consen 9 IYILCRVLIEILKQSPLHSLTEEL---GDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDR 85 (552)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHH---HHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence 488899999999876532 12223 23333444444332222 11 2678899999998654 36
Q ss_pred chHHHHHhhcCCCcch-h-HHHhhhhHhhhcCCCc--h---hhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHH----
Q 000941 962 LVPALKVRTTSSAAFT-R-ATVVIAIKYSIVERPE--K---IDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFA---- 1030 (1215)
Q Consensus 962 ~lp~l~~~l~~~~~~~-R-~~~i~~lk~~i~~~~~--~---~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~---- 1030 (1215)
|+-.|.+..++.+..+ + ...+..+||+=-..-. + .-+++..+-.-|...- .+.+||.+-..+|..+.
T Consensus 86 F~~eL~~~~~~~~~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h--~~~~ik~A~~~~l~~lLlPvA 163 (552)
T PF14222_consen 86 FIAELEKLRKDSNDAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH--KKSDIKHAYCEVLVELLLPVA 163 (552)
T ss_pred HHHHHHHhcccCCchHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHHh
Confidence 7777777764322221 1 5567777765433321 1 1233444333333321 46779998888888743
Q ss_pred -hcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHh--
Q 000941 1031 -HNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLK-- 1107 (1215)
Q Consensus 1031 -~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~-- 1107 (1215)
..++++-.|...+.+..+|..+..--. -=||.. .||=.+.++|... -.+++..+|.
T Consensus 164 ~~~~~evn~P~W~~~v~~i~~~~~~~~~--------K~khw~--------~afPL~t~lLCvS-----~~e~F~~~W~~~ 222 (552)
T PF14222_consen 164 ATATAEVNHPKWKEAVETIYPRAAKMMS--------KPKHWN--------VAFPLVTTLLCVS-----PKEFFLSNWLPS 222 (552)
T ss_pred hcccccccccHHHHHHHHHHHHHHHHHh--------Ccchhh--------hHHHHHHHHHhcC-----cHHHHHHHHHHH
Confidence 334443344445555555554331000 013333 4666666665543 2233323443
Q ss_pred ------cccCCcchhHhhHHHHHHHHH-----hhChhh---HHHhHHHhhHHHHhhhcccCCcchhhhhh
Q 000941 1108 ------SGLEDHYDVKMPCHLILSKLA-----DKCPSA---VLAVLDSLVDPLQKTINFKPKQDAVKQEV 1163 (1215)
Q Consensus 1108 ------~gl~D~~di~~~~~~~l~~l~-----~~~p~~---~~~~l~~l~~~l~~~l~~k~k~~~~~qe~ 1163 (1215)
..+||- ..|..+...|.||+ ..+++. ...+||+++..+ +.++ |.+.+..|.
T Consensus 223 ~i~~~~~klKdk-~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~l---fp~~-kk~~i~~D~ 287 (552)
T PF14222_consen 223 LIESLISKLKDK-ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLL---FPKG-KKGWIPRDP 287 (552)
T ss_pred HHHHHHhhcCCh-hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH---ccCC-CCcccCCCh
Confidence 236764 56777777788874 455553 345666555444 4333 557777773
No 285
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.44 E-value=4.1e+02 Score=35.98 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHH
Q 000941 482 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1215)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1215)
...+|..++.++..++=.+.....+...+.|-..+...+.|..-.++.+|..++.-+.+.- +.....+--
T Consensus 1540 tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s----------~~~~~~~k~ 1609 (1710)
T KOG1851|consen 1540 TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS----------KFQFVSDKR 1609 (1710)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc----------ccccchHhh
Confidence 4678999999999887554433445678888888999999887789999999998887542 111111111
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhh
Q 000941 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM 611 (1215)
Q Consensus 562 ~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L 611 (1215)
............+......|.-++|.++-.++..+...++..+..+....
T Consensus 1610 d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1610 DTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred hhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence 11222223333345566788889999988886655444444444444333
No 286
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=69.13 E-value=38 Score=31.46 Aligned_cols=51 Identities=29% Similarity=0.428 Sum_probs=30.9
Q ss_pred chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh---hhcccHHHHHHHHHHH
Q 000941 248 HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR---DISSYCDEILHLTLEY 303 (1215)
Q Consensus 248 ~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~---~~~~~l~~ii~~~l~~ 303 (1215)
|+.+++..+.. . +++.+-.+.++...+.++++.+. ++..|..+++..++.+
T Consensus 4 YlrDll~~L~~----~-~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L 57 (114)
T PF10193_consen 4 YLRDLLEYLRS----D-DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHL 57 (114)
T ss_dssp -HHHHHHHHT-----------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhc----C-cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc
Confidence 66666655432 1 23567778999999999999887 8888888888777653
No 287
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.86 E-value=52 Score=33.03 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh------h----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSN------D----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKA 209 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~------~----~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l 209 (1215)
...+.-+++++..+++..|..+.. . ...+.+.++..+.++...+=.+++..+..+.......+ ++-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999988887762 1 24556666777766667777788888888887665543 4556
Q ss_pred HHHHHHH-hhcCCCChHHHHHHHHHHHHHHh
Q 000941 210 TIEVVRN-LRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 210 ~~~ll~~-l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
++.++.. +.+++.....|..+++++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666663 33333223577788888888886
No 288
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.69 E-value=25 Score=30.66 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 000941 132 LTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIA 195 (1215)
Q Consensus 132 L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~ 195 (1215)
+...+.+. ++.++|.-.++++..++...|..+..-++.+..++-....+++..+-+.|..++.
T Consensus 22 f~~i~~~~-~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 22 FEYIMSNN-PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHhcc-CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 33333433 3689999999999999999999999899999999988888877778778887764
No 289
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=67.32 E-value=8.6 Score=28.28 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 000941 153 LCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCI 194 (1215)
Q Consensus 153 L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l 194 (1215)
|+.+++..+..+ ..+.+++.+...+.|+++.||+.|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 344444444443 3457788888889999999999998753
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.69 E-value=55 Score=31.79 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
+..+.+.+++.+. .+...++..+.++++.||.+|...+ ...+..+...+.. ..+.++++-++..+..|...++.
T Consensus 43 ~ral~krl~~~n~--~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 43 MRALKKRLLSKNP--NVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHcCCCh--HHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHHHhCC
Confidence 3444555555432 4556678888888888887666543 3345555554443 36788999999999999987764
Q ss_pred hhcccHHHHHHH
Q 000941 288 DISSYCDEILHL 299 (1215)
Q Consensus 288 ~~~~~l~~ii~~ 299 (1215)
. |.++.+...
T Consensus 119 ~--~~l~~i~~~ 128 (142)
T cd03569 119 K--PQLKYVVDT 128 (142)
T ss_pred C--cccHHHHHH
Confidence 3 444444443
No 291
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.57 E-value=2.5e+02 Score=37.95 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=73.2
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHhhc----CCC---Ch-HHHHHHHHHHHHHHh---hhhh
Q 000941 179 LSANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRNLRS----KGA---KP-EMIRTNIQMVGALSR---AVGY 243 (1215)
Q Consensus 179 l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~ll~~l~~----~~~---~~-~~~~~~i~~l~~l~~---~~~~ 243 (1215)
..+.+..+|+++++.+-.+....++. .|+.+.. ++=.+.+ +.. ++ =...+..+++-.++. ..=.
T Consensus 1183 ~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~ 1261 (1514)
T KOG0929|consen 1183 INDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFK 1261 (1514)
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567899999999987776665554 4666655 3222211 111 00 123344444444443 2223
Q ss_pred hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcc-cHHHHHHHHHHHh
Q 000941 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYL 304 (1215)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~-~l~~ii~~~l~~l 304 (1215)
.+.+.|+.+.-.+..+.. .++..+......+|..++...+..|.. .++++...+.+..
T Consensus 1262 ~l~~lL~~~~~ll~~ci~---~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1262 QLNNLLPKVLGLLVGCIK---QDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHHHHhc---CcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 444456666666666665 367778888899999999888766654 5677777666654
No 292
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=65.06 E-value=74 Score=32.89 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcc
Q 000941 445 GAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1215)
Q Consensus 445 ~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1215)
.++.+++.+.+.++..-.+.+..++..+.+.-.+.. -..+.++=.+++..++..||+.+
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~--f~~~~~~e~~lgaAi~amGpe~v 77 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESED--FSFRKELEQVLGAAIRAMGPEQV 77 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHCCHHHH
Confidence 445556666665554444556666655555433332 35677777888888888887654
No 293
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=64.38 E-value=59 Score=31.15 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
+..+.+.+++++. .+...++..+.++++.||..|...+ ...+..+...+... ...+.+|+-++..+..|...++
T Consensus 39 ~r~l~krl~~~n~--~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~-~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 39 VRLLKKRLNNKNP--HVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK-YPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHc
Confidence 3344555555442 4556678888888888887766544 33455555555432 2334599999999999988764
No 294
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.35 E-value=3.1e+02 Score=32.77 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=79.5
Q ss_pred HHHHHh-ccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHH
Q 000941 108 LKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASV 186 (1215)
Q Consensus 108 L~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~v 186 (1215)
|+++++ .++..+-+..+...++-.++.|...+ +..||..++.+|.-+..+.++.=..-+..++..+..-+-+..+.|
T Consensus 71 l~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~esk--dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~V 148 (885)
T COG5218 71 LKRFFEYDMPDDPEGEELVAGTFYHLLRGTESK--DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAV 148 (885)
T ss_pred HHHHHHhcCCCChhhhHHHHHHHHHHHhcccCc--chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHH
Confidence 445555 33332222334444555666676664 688999999999999888887544456777777777777888899
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 000941 187 RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1215)
Q Consensus 187 rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1215)
|..|+.||+.+-..-.++- +.+...+...++.... +++|+.++.
T Consensus 149 R~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS-~EVRr~all 192 (885)
T COG5218 149 RREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPS-DEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcH-HHHHHHHHH
Confidence 9999999998876554432 2233344444554433 478887654
No 295
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=63.57 E-value=25 Score=34.91 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHhcc--CcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH--H
Q 000941 51 VVQQLD--DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH--T 126 (1215)
Q Consensus 51 ll~~L~--D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~--~ 126 (1215)
++..|. ...++||.+|.=|+..+....+++.-..+-+.+-..+.++..+..-.+..++..++-..| +....++ +
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~--dv~~~l~~~e 85 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP--DVGSELFLSE 85 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH--HHHHHHCCTT
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH--HHHHHHHhhh
Confidence 444444 357899999999999987554444433444444444443333333344444444443222 2322221 2
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHhhhhc-CChHH-HHHHHHHHHHH
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHK--FGNLMSNDHERLLSALLPQLS-ANQAS-VRKKSVSCIAS 196 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~--~g~~l~~~~~~ll~~ll~~l~-~~~~~-vrk~a~~~l~~ 196 (1215)
.+++.++..+.....+..++..++++|+.-+.. .-..+..++ .+++-..++ +++.. +|-+|..+|..
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~---~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY---VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC---HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH---HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 344455544442223678888888888754322 112232333 333434443 33344 78888877754
No 296
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=63.12 E-value=40 Score=29.43 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHH
Q 000941 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1215)
.++..+...+.+.. +.++|+..++|+..+....+..+..--+.++..+-.... ++++++-..|+++++
T Consensus 17 ~fL~Pf~~i~~~~~-~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~---~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNP-SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAK---DNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHh---CCCccHHHHHHHHHh
Confidence 34444444444443 358899999999999999998888888888888777665 467778777877664
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.92 E-value=79 Score=30.66 Aligned_cols=78 Identities=12% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHH-HHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPV-LIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~-ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
.+..+.+.+.... +..+...++.++.++++.||.+|...+ ...+.- +...+......+.++++-++..+..|...+
T Consensus 39 a~ralkkRl~~~~-n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNK-NHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3444555554322 234566789999999999998877544 234443 444444221245689999999999999877
Q ss_pred hh
Q 000941 286 PR 287 (1215)
Q Consensus 286 ~~ 287 (1215)
+.
T Consensus 118 ~~ 119 (141)
T cd03565 118 RG 119 (141)
T ss_pred CC
Confidence 54
No 298
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=62.52 E-value=2.2e+02 Score=30.47 Aligned_cols=87 Identities=11% Similarity=0.192 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc----CCC-cH-H---HHHHHHHHHH
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA----SEN-DE-E---LREYSLQALE 279 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~----~~~-d~-e---lre~al~~l~ 279 (1215)
+++.++..+..+...+...-+.+.+++.|++.-| .|.+.|++.++.+-... ... .. . ++...-..|.
T Consensus 115 lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~ 190 (239)
T PF11935_consen 115 LLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLL 190 (239)
T ss_dssp HHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHH
Confidence 4445556665555334555667788888887554 35678888887765421 000 00 1 2222222333
Q ss_pred HHHHhChhhhcccHHHHHHHHH
Q 000941 280 SFLLRCPRDISSYCDEILHLTL 301 (1215)
Q Consensus 280 ~l~~~~~~~~~~~l~~ii~~~l 301 (1215)
.+. ++|. ..||-+++...+.
T Consensus 191 ~ll-k~~~-~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 191 HLL-KHPA-SSPFQGRITQALT 210 (239)
T ss_dssp HHH-TSGG-GGGGHHHHHHHHH
T ss_pred HHH-CCCC-chhhHHHHHHHHH
Confidence 333 4452 3388888888776
No 299
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.35 E-value=78 Score=30.81 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhh--hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~--~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
..+++|.+.+..+++.+..-++.+|..++...|..|... -..++..+.+.+.++ ....++...+.++......
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHH
Confidence 456788888888999999999999999999888766542 335667777777765 4467888888877776543
No 300
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=61.61 E-value=4.8e+02 Score=34.00 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~ 74 (1215)
...-.++.||.+.|+-+|+.|+..|...++... +.....+++..+++.+.+.-..+|-...-|++.+.
T Consensus 73 k~~ldlf~klas~l~~~r~~aa~~Ll~~lq~~~---~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 73 KEKLDLFTKLASSLRPVRLAAAFQLLADLQELR---DAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred hHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 444578899999999999999999988777533 56778899999999999777889998888998776
No 301
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=61.34 E-value=7.9 Score=25.24 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=17.0
Q ss_pred HhhHHHHHHHhhhhcCcccchHHHHHHh
Q 000941 865 IKSAASYALGNIAVGNLSKFLPFILDQI 892 (1215)
Q Consensus 865 vR~aAa~aLG~l~~~~~~~~lp~il~~l 892 (1215)
||.+|+.+||.+.. +..+|.+++.+
T Consensus 1 VR~~Aa~aLg~igd---~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD---PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHh
Confidence 68999999998775 34555555544
No 302
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=60.62 E-value=1.8e+02 Score=33.20 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=88.5
Q ss_pred HHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc--------------cchhHHHHHHHH
Q 000941 7 AAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--------------GDVSGLAVKCLA 71 (1215)
Q Consensus 7 ~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~--------------~~Vq~~A~~~l~ 71 (1215)
.-++..+ +..|.++=..-+.-|..-|++..+-...+ .+++...|.+.+.|++ .|++.....+|+
T Consensus 144 ~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls 222 (356)
T PF03542_consen 144 SVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLS 222 (356)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3344444 45777776677777777777644322222 6666666766655432 377888899999
Q ss_pred HHhhc---cChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHH
Q 000941 72 PLVKK---VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1215)
Q Consensus 72 ~l~~~---~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~ 148 (1215)
.|+.+ +.......++..+..++.++. -..+-.||-.+|-++|. .+.+.+|.++..|.+-.....+...
T Consensus 223 ~LisYh~~~~k~~qd~iV~~l~~GL~s~~---a~~CI~aLtic~~EmP~------s~~k~L~~iL~kLs~i~tt~~~Ai~ 293 (356)
T PF03542_consen 223 ALISYHSHFSKQEQDEIVRALESGLGSKT---AKPCIHALTICCYEMPD------SMKKLLPSILLKLSKISTTPNMAIH 293 (356)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHhhccchhhHHH
Confidence 99863 555667789999988875522 12344566667777764 3456667777766653334555666
Q ss_pred HHHHHHHHH
Q 000941 149 CLDILCDVL 157 (1215)
Q Consensus 149 al~~L~~l~ 157 (1215)
.++.|+.+.
T Consensus 294 ILEFLs~L~ 302 (356)
T PF03542_consen 294 ILEFLSSLS 302 (356)
T ss_pred HHHHHHHHh
Confidence 666666553
No 303
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.57 E-value=1.7e+02 Score=28.36 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHhhhh--cCChHHHHHHHHHHHHHHHhhcCH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSND------HERLLSALLPQL--SANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~------~~~ll~~ll~~l--~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
++.++..|+.+|..+++++|..+..+ ...++..+-+.- ......||.+.+..+-.-+..+++
T Consensus 51 n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 51 QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999977532 334444442211 123568999999999888766643
No 304
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=60.53 E-value=1.1e+02 Score=34.50 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhc-cCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHH
Q 000941 486 KIEALTFTRLVLS-SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564 (1215)
Q Consensus 486 ~~~al~~l~~l~~-~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l 564 (1215)
|++++.-+...+. .|-++.+.+-...+...+..+++.+..+-..-+-.+++.++..+++. +.-..+.....+..
T Consensus 77 R~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~-----q~~ee~~~t~~~~~ 151 (427)
T KOG2842|consen 77 RQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPG-----QEEEEWTKTLGPFL 151 (427)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCc-----chhhHHHhccchHH
Confidence 4555544333322 22233334445566667777776554332222333455555555542 23334444555554
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHh
Q 000941 565 MSRLTNQDQDQEVKECAISCMGLVIST 591 (1215)
Q Consensus 565 ~~~l~~~d~~~~Vr~~Ai~~lg~l~~~ 591 (1215)
...+..++....-|..+..|+|..+-.
T Consensus 152 ~li~~d~s~sv~~r~~ca~sl~v~~l~ 178 (427)
T KOG2842|consen 152 ALILDDESASIKARSICATSLGTACLI 178 (427)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHH
Confidence 554555555566777778888765433
No 305
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.50 E-value=2.5e+02 Score=30.47 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=108.3
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCc--------CCCCCCh-hcHHHHHHHHHHHhhccCCCHHHHHHH
Q 000941 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE--------GLGFDFK-PYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1215)
Q Consensus 511 ~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--------~~~~~~~-~~l~~l~~~l~~~l~~~d~~~~Vr~~A 581 (1215)
+++=..+++++..+-..-.+|+..+..++..+.-... ..+..+. .-.+.+-+.+++.+....+ -+.+
T Consensus 7 QlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t----~e~t 82 (262)
T PF14225_consen 7 QLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST----YELT 82 (262)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc----HHHH
Confidence 3333444555544444555666666665544322110 0122332 3455567777777764433 4667
Q ss_pred HHHHHHHHHhccCc-ccc-------hhhhhHHHHHHhhccch------hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 000941 582 ISCMGLVISTFGDN-LGA-------ELPACLPVLVDRMGNEI------TRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647 (1215)
Q Consensus 582 i~~lg~l~~~~~~~-l~~-------~~~~~l~~L~~~L~~e~------~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L 647 (1215)
+..+..++....+. +.+ .+-..+|.++..+.++. -...+...|..++...... .+-..+
T Consensus 83 l~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~-------~La~il 155 (262)
T PF14225_consen 83 LRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP-------NLARIL 155 (262)
T ss_pred HHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc-------cHHHHH
Confidence 88888877665332 211 23455666666665544 1234556677776432111 222223
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhh
Q 000941 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRN 727 (1215)
Q Consensus 648 ~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~ 727 (1215)
..|.+...|....=.-..+..+-..+.. +.--.++..+..++..+-..++..++.++..+..... .......
T Consensus 156 ~~ya~~~fr~~~dfl~~v~~~l~~~f~P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d----~~~~~~~ 227 (262)
T PF14225_consen 156 SSYAKGRFRDKDDFLSQVVSYLREAFFP----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD----MRSPHGA 227 (262)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc----CCCCcch
Confidence 3333333322221111222223333322 3334455566677766666778888888888887532 1122556
Q ss_pred hhHHHHHHHhhhcc
Q 000941 728 KVLPQALALIKSSL 741 (1215)
Q Consensus 728 ~~l~~l~~ll~s~~ 741 (1215)
.++.++.++++++.
T Consensus 228 dlispllrlL~t~~ 241 (262)
T PF14225_consen 228 DLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHHhCCcc
Confidence 67888888886554
No 306
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.04 E-value=68 Score=31.06 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHHHHHhhcCCCCcch--hHHHHHHHHHHHhccC
Q 000941 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSN--LKIEALTFTRLVLSSH 500 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~l~~~l~d~~~~~~--~~~~al~~l~~l~~~~ 500 (1215)
...+++|.+.|+.+++.++.-|+.++..++...+..|...+ ..++..+...+.++..... ++..++.++.......
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999998776665432 3456666666665554333 7888887777665443
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=59.91 E-value=72 Score=29.95 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=42.0
Q ss_pred HHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhH
Q 000941 28 LLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1215)
Q Consensus 28 L~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~ 82 (1215)
+++++.+-.+. +......++++|++-|+|+++-|+--|.++|-.++...++...
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH
Confidence 34444433333 5567889999999999999999999999999999988776443
No 308
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=59.71 E-value=2.6e+02 Score=30.32 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHhh-------hhhh-hhHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcC----HH---HH
Q 000941 143 TEIRCECLDILCDVLHKFG-------NLMS-NDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLS----DD---LL 206 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g-------~~l~-~~~~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~----~~---~~ 206 (1215)
+..-.++..+|+.++.... ..+. .....+-..++..|.. .+...=..+..++..++..+- .+ +-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 4444556666666665431 2222 2344455555555432 123333444555555544332 11 22
Q ss_pred HHHHHHHHHHhhcC-CC-ChHHHHHH--HHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCC-----cHHHHHHHHHH
Q 000941 207 AKATIEVVRNLRSK-GA-KPEMIRTN--IQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN-----DEELREYSLQA 277 (1215)
Q Consensus 207 ~~l~~~ll~~l~~~-~~-~~~~~~~~--i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~-----d~elre~al~~ 277 (1215)
..-+..+++.+.+. .. ..-.||.+ -.++.+|..+.+..-.+.++..|..+++..+..... .+.-+=.|++.
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 33455566666554 11 11355543 456677777766543478888999999887643211 12355678888
Q ss_pred HHHHHHh--ChhhhcccHHHHHHHHHHHhc
Q 000941 278 LESFLLR--CPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 278 l~~l~~~--~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
+..+.+. ....+.+|+++.+.+.++.+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 8777663 346788999999988887764
No 309
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=59.57 E-value=86 Score=29.44 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=55.8
Q ss_pred HhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHH
Q 000941 1002 PEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAA 1081 (1215)
Q Consensus 1002 ~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A 1081 (1215)
.++.-+++.|++.++.|+.=++..|-.+.++.+..+...+..-...+..-..-+ -...|+ |-.+-|-.+|..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~------g~~Dp~-~Gd~~~~~VR~~A 110 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYK------GPPDPL-KGDSLNEKVREEA 110 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcC------CCCCcc-cCcchhHHHHHHH
Confidence 445566678999999999999999999999998887766655444333221110 000111 2345688899999
Q ss_pred HHHHHHHHh
Q 000941 1082 FECVDTLLD 1090 (1215)
Q Consensus 1082 ~~~l~~ll~ 1090 (1215)
-|++..+..
T Consensus 111 ~El~~~if~ 119 (122)
T cd03572 111 QELIKAIFS 119 (122)
T ss_pred HHHHHHHhc
Confidence 999988754
No 310
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=59.50 E-value=66 Score=31.29 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcC
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA-NQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
++.++..|+.+|..+++++|..+..+. ...++.+...+.. ....||.+.+..+...+..+.
T Consensus 50 n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 50 DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 588999999999999999999775332 3445555555554 456899999999988876664
No 311
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=59.26 E-value=2.2e+02 Score=30.46 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=43.7
Q ss_pred hcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH---HHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV---SKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 379 ~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~---p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
++|+++.|...+++|.+.+.+..-. |. ...+ ...+.| ..+=..+...+.+.++.+|..|+.++..++.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~---~i----~~~~--~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFR---WI----CVNP--SDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHH---HH----S--H--HHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH---HH----cCCc--hHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 3667777777777776666554210 00 0001 233444 4444677777888888899999999999887
Q ss_pred hC
Q 000941 456 VL 457 (1215)
Q Consensus 456 ~~ 457 (1215)
+.
T Consensus 73 ~q 74 (239)
T PF11935_consen 73 VQ 74 (239)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 312
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=58.87 E-value=3.1e+02 Score=31.01 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhh---ccch----hhhHHHHHHhhcccCCCcHHHHHHHHHHHH
Q 000941 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRF---GPHL----GDTVPVLIDYCTSASENDEELREYSLQALE 279 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~---~~~l----~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1215)
+++..++..+..-+ -+.|+.+.+.++.+.+.. +.++ ..|+ +.++..++.+-+. +|+ |+. ++
T Consensus 76 dll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~-----~di---al~-~g 144 (335)
T PF08569_consen 76 DLLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN-----PDI---ALN-CG 144 (335)
T ss_dssp THHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS-----TTT---HHH-HH
T ss_pred CHHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC-----ccc---cch-HH
Confidence 45666676666544 478899999999999864 3333 2244 6677777766542 222 221 12
Q ss_pred HHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh
Q 000941 280 SFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1215)
Q Consensus 280 ~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~ 359 (1215)
.+.+-|-+ .+. +.+++-++|.+. ..- +|. ...+..|=.-|-..+..++..
T Consensus 145 ~mlRec~k-----~e~----l~~~iL~~~~f~----------------~ff---~~~--~~~~Fdiasdaf~t~~~llt~ 194 (335)
T PF08569_consen 145 DMLRECIK-----HES----LAKIILYSECFW----------------KFF---KYV--QLPNFDIASDAFSTFKELLTR 194 (335)
T ss_dssp HHHHHHTT-----SHH----HHHHHHTSGGGG----------------GHH---HHT--TSSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHh-----hHH----HHHHHhCcHHHH----------------HHH---HHh--cCCccHhHHHHHHHHHHHHhc
Confidence 22222211 011 122222232210 000 000 011233444566667777777
Q ss_pred Cc----hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHHHH
Q 000941 360 RP----EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINR 433 (1215)
Q Consensus 360 ~~----~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l~~ 433 (1215)
++ +.+...|..+....-..+...+.-+|..+++.++.++-.-. ....+..++ |.-++.+..
T Consensus 195 hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~-------------n~~vm~~yi~~~~nLkl~M~ 261 (335)
T PF08569_consen 195 HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS-------------NFNVMTRYISSPENLKLMMN 261 (335)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG-------------GHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh-------------HHHHHHHHHCCHHHHHHHHH
Confidence 65 44555666777665555677889999999999999986421 112334444 888899999
Q ss_pred HhcccChhhHHHHHHHHHHHHHh
Q 000941 434 QLREKSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 434 ~L~~~~~~~r~~~~~~l~~L~~~ 456 (1215)
.|++++...|..|+.++.-++..
T Consensus 262 lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 262 LLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999999999999988864
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.43 E-value=1e+02 Score=29.57 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhh--hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~--~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
..+++|.+.++.+++.++.-++.+|..++...+..|... -..++..+...+.++...+.++..++.++..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 456778888998999999999999999999877766543 2345667777777665433477777777766544
No 314
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=58.03 E-value=3.4e+02 Score=31.11 Aligned_cols=240 Identities=19% Similarity=0.221 Sum_probs=119.6
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---------HHHHHHHHHHH--hhcCC-CCh----HHHH--
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---------LAKATIEVVRN--LRSKG-AKP----EMIR-- 228 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---------~~~l~~~ll~~--l~~~~-~~~----~~~~-- 228 (1215)
|...+.+++-+.+...++....+...++|.+..+++.-+ +..+++.++-. +.... ... ..++
T Consensus 66 Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~l 145 (373)
T PF14911_consen 66 YFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKSL 145 (373)
T ss_pred HHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHHH
Confidence 444555555566655566778888888888887766543 44444444322 11111 000 1222
Q ss_pred -HHHHHHHHHHhhhhhhhccchhhhHHHHH----Hhhc----------------ccCCCcHHHHHHHHHHH-HHHHHhCh
Q 000941 229 -TNIQMVGALSRAVGYRFGPHLGDTVPVLI----DYCT----------------SASENDEELREYSLQAL-ESFLLRCP 286 (1215)
Q Consensus 229 -~~i~~l~~l~~~~~~~~~~~l~~iip~ll----~~~~----------------~~~~~d~elre~al~~l-~~l~~~~~ 286 (1215)
.++|.++.+. .+-.+|+.+.+.-++ .... .....+.++|...++.+ +++...-+
T Consensus 146 pl~lqGl~~~~----~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~ 221 (373)
T PF14911_consen 146 PLFLQGLGRLS----QRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKG 221 (373)
T ss_pred HHHHHHHHhcc----cccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 2334444222 222333333222211 1110 00134667777777665 44555445
Q ss_pred hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHH
Q 000941 287 RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 287 ~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
....|++..++..+...++--.-+ .-+....
T Consensus 222 ~~p~p~l~~vL~fl~~Ll~~~~~~-------------------------------------------------~~~~~~~ 252 (373)
T PF14911_consen 222 SAPPPRLASVLAFLQQLLKRLQRQ-------------------------------------------------NENQILT 252 (373)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCcc-------------------------------------------------cchhHHH
Confidence 556778888888877776520000 0001112
Q ss_pred HHHHHHHHHHhhh--cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHH-HHHhcccChhhH
Q 000941 367 LYEEACPKLIDRF--KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSI-NRQLREKSIKTK 443 (1215)
Q Consensus 367 ~~~~i~p~Li~~~--~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l-~~~L~~~~~~~r 443 (1215)
+.+.++|.+++.+ -+.++.+|.-+...+..+++..... .+..+ .+.+..++... .+.+. ..-
T Consensus 253 ~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~-------~~~~~----~~~l~s~lrsfvqk~l~----~~t 317 (373)
T PF14911_consen 253 LLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVG-------SSGEP----REQLTSVLRSFVQKYLA----HYT 317 (373)
T ss_pred HHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccccc-------CcchH----HHHHHHHHHHHHHHHhh----hhh
Confidence 3344555555542 3446789988888888888765411 11122 33333333222 22222 123
Q ss_pred HHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcC
Q 000941 444 VGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478 (1215)
Q Consensus 444 ~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d 478 (1215)
.-.+.++..++...|. .+..++|.+...+.+
T Consensus 318 ~~~f~~l~~vA~l~p~----lV~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 318 YQYFQFLEKVAELDPQ----LVISLIPTIRQSLKD 348 (373)
T ss_pred HHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHH
Confidence 3457888888875443 466667777766654
No 315
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=58.00 E-value=3.8e+02 Score=33.81 Aligned_cols=124 Identities=12% Similarity=0.164 Sum_probs=69.8
Q ss_pred cchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh-
Q 000941 382 REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC- 460 (1215)
Q Consensus 382 ~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~- 460 (1215)
|-..|.. +..++..++.+.. +.+.-.....+..+.+.|.+.+++.+..|...|-.++.....+
T Consensus 69 r~~~v~I-amea~~kLL~~C~---------------eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~ 132 (819)
T KOG1877|consen 69 RFGSVKI-AMEAYDKLLQACK---------------EQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGP 132 (819)
T ss_pred cCcchhh-HHHHHHHHHHHHh---------------hhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCc
Confidence 3344433 4566777776532 2344455777888888888888888888998888888554322
Q ss_pred -hhhhhhhhhHHHHHhh---cCCCCcchhHHHHHHHHHHHhcc-----CCCCcchh-hhhhhHHHHHHHhc
Q 000941 461 -LADHIGSLIPGIEKSL---NDKSSTSNLKIEALTFTRLVLSS-----HSPPVFHP-YIKALSSPVLAAVG 521 (1215)
Q Consensus 461 -l~~~~~~lv~~l~~~l---~d~~~~~~~~~~al~~l~~l~~~-----~~~~~~~~-~l~~l~p~l~~~l~ 521 (1215)
.....+.+++.+...- .+......+|.+.+..|..++.- ..+..+.+ |.++++|.+...++
T Consensus 133 sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 133 SYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred hhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhc
Confidence 1111233333333322 22222234566666555554321 12234444 58888888876654
No 316
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=57.67 E-value=2e+02 Score=28.78 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=57.3
Q ss_pred hHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh-hhcCChH--HHHHHHHHHHHH
Q 000941 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP-QLSANQA--SVRKKSVSCIAS 196 (1215)
Q Consensus 120 ~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~-~l~~~~~--~vrk~a~~~l~~ 196 (1215)
+...+-+.+.|.+++.+... +..+-..++.++..++.+++..+..+.+.+++.++. .+.++.+ .-|..+++++..
T Consensus 66 l~~~lk~~l~~~Ll~~~~~~--~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLSSS--DFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 44445567778888777664 477888999999999999999998888888777776 5554442 456667777776
Q ss_pred HHh
Q 000941 197 LAS 199 (1215)
Q Consensus 197 l~~ 199 (1215)
+..
T Consensus 144 l~~ 146 (168)
T PF12783_consen 144 LCK 146 (168)
T ss_pred HHh
Confidence 664
No 317
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=57.66 E-value=1.7e+02 Score=27.99 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH-----HHHHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA-----KATIEVVRN 216 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~-----~l~~~ll~~ 216 (1215)
++..-.+.+|.+..- ...-...+..+..-+.++++.++-+|+..+..++..++..+.. ..+..+...
T Consensus 17 D~~~il~icd~I~~~--------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l 88 (133)
T cd03561 17 DWALNLELCDLINLK--------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKI 88 (133)
T ss_pred cHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHH
Confidence 455555555554321 1123455667777788889999999999999999999887422 345566666
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHhhhh
Q 000941 217 LRSK-GAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 217 l~~~-~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
+.+. .....++..+++++.......+
T Consensus 89 ~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 89 AKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6553 3345788888888888877655
No 318
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=1.4e+02 Score=36.14 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCc--hhHhhHHHHHHHhhhhcCc
Q 000941 808 KCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF--EEIKSAASYALGNIAVGNL 881 (1215)
Q Consensus 808 ~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~--e~vR~aAa~aLG~l~~~~~ 881 (1215)
+.+..+.-+..+++++++.-+.-++..||-..... . .+++...+.+.+.+.+ .+|..-|+.+||.+.+|.-
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGs--q-~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc 521 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGS--Q-REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSC 521 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCC--c-hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecC
Confidence 34566666777777665556778887777532221 1 2344445666665443 5688889999999887643
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=56.57 E-value=1.7e+02 Score=36.73 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=95.1
Q ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH
Q 000941 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH 125 (1215)
Q Consensus 46 ~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~ 125 (1215)
..+..|+..|++++-.|-..+-+.+-.+...-++. -++..|+.+..+.+.. .++.-++ .+ ..+.-
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~y~~~t~s~------~~~~il~-~~-----~~P~~ 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP---WLVNGLVDYYLSTNSQ------RALEILV-GV-----QEPHD 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---HHHHHHHHHHhhcCcH------HHHHHHH-hc-----CCccH
Confidence 34667888888888888777777777666544442 4577777766554332 2222222 11 12223
Q ss_pred HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhcCH
Q 000941 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALLPQLS-ANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 126 ~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~ll~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
+.++..|-+.+. .+..|..++.+|+.++..-+.-+..- .-.+.+.++.+|. +.+..+=-.|+.+|..|.+.++.
T Consensus 69 K~~~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 69 KHLFDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 444445544444 35789999999999999988766432 2245555666665 44567888999999999988876
Q ss_pred H---HHHHHHHHHHHH
Q 000941 204 D---LLAKATIEVVRN 216 (1215)
Q Consensus 204 ~---~~~~l~~~ll~~ 216 (1215)
. ++..++..+...
T Consensus 145 ~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5 344554444433
No 320
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.57 E-value=1.9e+02 Score=27.89 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcCCh--HH--HHHHHHHHHHHHHhhcC
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSANQ--AS--VRKKSVSCIASLASSLS 202 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~~~--~~--vrk~a~~~l~~l~~~~~ 202 (1215)
++.++..|+.+|..++.+.|..+..+. ...+..+...+.++. .. ||++++..+...+..+.
T Consensus 55 ~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 55 NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 689999999999999999998775432 345555555444322 22 99999999988887773
No 321
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=56.32 E-value=52 Score=30.87 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 638 CVLEHVIAELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 638 ~~l~~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.+++.++|.+...+. +....+|.+++..++.++...+ +.++.++.++..+......... ...++.++..+++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467788888988888 7778999999999999987754 5666677777776665544333 35677777777764
No 322
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.00 E-value=1.2e+02 Score=29.38 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhh--hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~--~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
..+++|.+.++.+++.++.-|+.+|..++...|..|... -..++..+...+.+ .....++..++.++..-...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHH
Confidence 456788888988999999999999999998877665442 23455666666654 33467887778777666543
No 323
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.42 E-value=3.4e+02 Score=30.11 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=120.6
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH------hhhhhhhh-----HHHHHHHHhhhhcCC-hHHHHHHHHHHH
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHK------FGNLMSND-----HERLLSALLPQLSAN-QASVRKKSVSCI 194 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~------~g~~l~~~-----~~~ll~~ll~~l~~~-~~~vrk~a~~~l 194 (1215)
.++|.+++.+.... ..++..+.++++..++.. ||..- .| ...++..+.+.+... +|.+-.....+|
T Consensus 189 ~il~Li~~~l~~~g-k~~~VRel~~a~r~l~~dDDiRV~fg~ah-~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl 266 (461)
T KOG4199|consen 189 KILELILQVLNREG-KTRTVRELYDAIRALLTDDDIRVVFGQAH-GHARTIAKEGILTALTEALQAGIDPDSLVSLSTTL 266 (461)
T ss_pred hHHHHHHHHHcccC-ccHHHHHHHHHHHHhcCCCceeeecchhh-HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHH
Confidence 35566666665543 235666777777666543 22211 11 122444554444321 133333444555
Q ss_pred HHHHhhcCHHHHHHH-----HHHHHHHhhcCCCChHHH---HHHHHHHHHHHhhhhhh--h--ccchhhhHHHHHHhhcc
Q 000941 195 ASLASSLSDDLLAKA-----TIEVVRNLRSKGAKPEMI---RTNIQMVGALSRAVGYR--F--GPHLGDTVPVLIDYCTS 262 (1215)
Q Consensus 195 ~~l~~~~~~~~~~~l-----~~~ll~~l~~~~~~~~~~---~~~i~~l~~l~~~~~~~--~--~~~l~~iip~ll~~~~~ 262 (1215)
+.++. .+++-..+ +..++..+.+.+. ...| ++++.++..++.+-.-+ + ..-++.|+..+++..
T Consensus 267 ~~lAV--r~E~C~~I~e~GGl~tl~~~i~d~n~-~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-- 341 (461)
T KOG4199|consen 267 KALAV--RDEICKSIAESGGLDTLLRCIDDSNE-QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-- 341 (461)
T ss_pred HHHHH--HHHHHHHHHHccCHHHHHHHHhhhch-hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--
Confidence 55442 23321111 2345555555443 2344 45566666666543211 1 113455666555543
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhChhhhcccHHH-HHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCc
Q 000941 263 ASENDEELREYSLQALESFLLRCPRDISSYCDE-ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1215)
Q Consensus 263 ~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~-ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~ 341 (1215)
+|+.+.+.+.-++..++.+.|+.-+.+++. .-.+.++.|+--|--
T Consensus 342 ---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~------------------------------- 387 (461)
T KOG4199|consen 342 ---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA------------------------------- 387 (461)
T ss_pred ---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH-------------------------------
Confidence 578888888888888888988766655542 333455666644421
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE 396 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~ 396 (1215)
-.|.|-|+..++.++....+.-..++..=+..|+..-+..++.++..+-.++..
T Consensus 388 -a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 388 -AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred -HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 257778888888887665444444554445566655455556676665444433
No 324
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.85 E-value=16 Score=38.40 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=61.8
Q ss_pred HHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHH
Q 000941 946 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1025 (1215)
Q Consensus 946 ~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~ 1025 (1215)
.+..++|.+.... +.+.+.+.+.+.++++..|.+++..+-..+.+ +....++..+-..+.|++.-||.+.-.+
T Consensus 106 ~~~~~~~~~~~~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 106 LCSKLLGPLLKKH-PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp HTHHHHHHHHHHH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3345556554433 45678888888888888876666555433333 2233444445556789999999999999
Q ss_pred HHHHHhcCcccccchhhh
Q 000941 1026 LSTFAHNKPNLIKGLLPE 1043 (1215)
Q Consensus 1026 L~~~~~~~p~~i~~~l~~ 1043 (1215)
|..+....|+.+.+++.+
T Consensus 179 L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 179 LREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 999999999998888766
No 325
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=53.64 E-value=65 Score=29.86 Aligned_cols=74 Identities=9% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhc------ccCCCcHHHHHHHHHHHH
Q 000941 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCT------SASENDEELREYSLQALE 279 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~------~~~~~d~elre~al~~l~ 279 (1215)
...++..+.+.+.++++ .+...++.++.++++.+|.+|..++..-. ++...+. ...+.+..+|+.+++.++
T Consensus 35 ~~~~~~~l~kRl~~~~~--~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 35 PKEAVDAIKKRINNKNP--HVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 44566777777777654 56667888888888888887777663321 2222211 111346789999998888
Q ss_pred HHH
Q 000941 280 SFL 282 (1215)
Q Consensus 280 ~l~ 282 (1215)
.|+
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 775
No 326
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=53.17 E-value=2.6e+02 Score=28.77 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcccChhhHHHHHHHHHHHHHh
Q 000941 424 VSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 424 ~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~ 456 (1215)
+..++..+.++..++-.++|..|..+|..+...
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555666666666678999999999999843
No 327
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=52.56 E-value=5e+02 Score=31.73 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHH-hcccChhhHHH
Q 000941 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQ-LREKSIKTKVG 445 (1215)
Q Consensus 367 ~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~-L~~~~~~~r~~ 445 (1215)
+...++..++.-|.-.++.+|..++-++..+++... ...+.++++..... ..+... +...
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~------------------~~~l~~vlk~mY~afv~nsk~-~~~~ 339 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK------------------STCLDPVLKTMYLAFVRNSKF-VTVN 339 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh------------------hHHHHHHHHHHHHHHHHhCCC-CCCc
Confidence 444555555656766689999999999988877542 12222333222222 111110 1111
Q ss_pred H---HHHHH-HHHHhCchhh-------hhhhhhhhHHHHHhhcCCCCcchhH------HHHHHHHHHHhc--cCCCCcch
Q 000941 446 A---FSVLR-ELVVVLPDCL-------ADHIGSLIPGIEKSLNDKSSTSNLK------IEALTFTRLVLS--SHSPPVFH 506 (1215)
Q Consensus 446 ~---~~~l~-~L~~~~~~~l-------~~~~~~lv~~l~~~l~d~~~~~~~~------~~al~~l~~l~~--~~~~~~~~ 506 (1215)
. ++++. .+++.++-.. --|+.++--.+..++..++..+... +.++.+=..++. +.....++
T Consensus 340 tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq 419 (661)
T KOG2256|consen 340 TLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQ 419 (661)
T ss_pred ccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhh
Confidence 1 11111 1222221110 1255555555666665443211111 233433333333 22233455
Q ss_pred hhhhhhHHHHHHHhc----CCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHH
Q 000941 507 PYIKALSSPVLAAVG----ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 563 (1215)
Q Consensus 507 ~~l~~l~p~l~~~l~----d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 563 (1215)
|.+.+++..+..++. ..++..+-..+..+..+++.. ..|.|..+.++..
T Consensus 420 ~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ss--------g~fIPi~~ll~Em 472 (661)
T KOG2256|consen 420 PLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSS--------GTFIPLSPLLVEM 472 (661)
T ss_pred hhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhc--------CceeecHHHHHHH
Confidence 555555555555443 457788888888888888653 3477765555443
No 328
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=52.26 E-value=34 Score=31.71 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh---hhccchhhhHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHhChh
Q 000941 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSA-SENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~---~~~~~l~~iip~ll~~~~~~-~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
.++..+...+.+.+..+.++.....+.+.-+. .+..|-.+++..++..-+.- .++-++.|. +++-+++..+|.
T Consensus 7 Dll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~---~alval~v~~P~ 83 (114)
T PF10193_consen 7 DLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQ---NALVALVVAAPE 83 (114)
T ss_dssp HHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHH---HHHHHHHHHSGG
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHH---HHHHHHHHHhhH
Confidence 34555554332235667889999999998766 66777777777776643311 134455664 456667778897
Q ss_pred hhcccHH
Q 000941 288 DISSYCD 294 (1215)
Q Consensus 288 ~~~~~l~ 294 (1215)
.+.||+-
T Consensus 84 ~~~~~L~ 90 (114)
T PF10193_consen 84 KVAPYLT 90 (114)
T ss_dssp GHHH-HH
T ss_pred HHHHHHH
Confidence 7776653
No 329
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=52.15 E-value=2.8e+02 Score=33.64 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChh--hHHHHHHHHHHHhhcccCC
Q 000941 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLH--MTALALELCCTLMADKRSS 718 (1215)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~--~~~~al~~l~~l~~~~~~~ 718 (1215)
+..+..|..++.+++..+|..++.-|+..... ..-++++..|.|++.+.+.. +...+--.+|.+.-.
T Consensus 451 dpalALLsdyv~~~~s~~ri~aIlGLglayaG-------sq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvG---- 519 (878)
T KOG2005|consen 451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAG-------SQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVG---- 519 (878)
T ss_pred CHHHHHHHHhccCCCceeehHHhhhhHHhhcC-------CchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEe----
Confidence 34667788888888888898888777754322 22466666788888877665 444444445544321
Q ss_pred CchhhhhhhhhHHHHHHH
Q 000941 719 PNVGLAVRNKVLPQALAL 736 (1215)
Q Consensus 719 p~~~~~~~~~~l~~l~~l 736 (1215)
.....+...++..+++-
T Consensus 520 -scn~dvts~ilqtlmek 536 (878)
T KOG2005|consen 520 -SCNEDVTSSILQTLMEK 536 (878)
T ss_pred -cCChHHHHHHHHHHHHh
Confidence 22334555666666643
No 330
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.83 E-value=5.4e+02 Score=31.58 Aligned_cols=101 Identities=13% Similarity=0.257 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHHHHhhC---chhhH---HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Q 000941 342 SWKVRRAAAKCLAALIVSR---PEMLS---KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~---~~~l~---~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1215)
|+.+|-+-..+++.++..+ |++.. .-...++..+.+|+.|..+-+|..+++.+..++.-...+.++
T Consensus 312 s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~-------- 383 (1128)
T COG5098 312 SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR-------- 383 (1128)
T ss_pred chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch--------
Confidence 5688988888888887654 33333 344456677889999999999999999999988753222111
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc
Q 000941 416 PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP 458 (1215)
Q Consensus 416 ~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~ 458 (1215)
-..++....+.+.|++.-+|..+..+++.|...+|
T Consensus 384 --------r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 384 --------RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 13455666778888888899999999999987765
No 331
>COG5138 Uncharacterized conserved protein [Function unknown]
Probab=50.48 E-value=74 Score=29.99 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=58.2
Q ss_pred hhcccCCCchhchHHHHhcccCCcchhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHH
Q 000941 1090 DSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDM 1169 (1215)
Q Consensus 1090 ~~~~~~~~~~~~~~~~~~~gl~D~~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~ 1169 (1215)
.+.+..+|+..+. +|+.. .-+|..-.+.=..|++..|..+.+|...+.. +-|+.|-+-.+-.|.++|.++.
T Consensus 76 ka~P~tvdlrsI~-~hff~-----lA~K~~mL~se~sLv~~~~e~l~~Ra~~~~~---ASLn~~g~~s~nSqfv~~Ld~~ 146 (168)
T COG5138 76 KAKPSTVDLRSIC-PHFFY-----LAEKYAMLLSEGSLVAGLPEFLYERAGDYSS---ASLNLKGTFSENSQFVWRLDMV 146 (168)
T ss_pred hcCCceeehhhcc-hHHHH-----HHHHHHHHhcCchHhhhhHHHHHHHHHhhhc---cccCcccccccccHHHHHHHHH
Confidence 3345567777666 55543 2244333333345666677777777766655 3355553444457889999999
Q ss_pred HHHHHHHHHHhhcccCCCCChhHHHHHHHHh
Q 000941 1170 IRSALRAIASLNQISGGDCSMKFKSLMSEIS 1200 (1215)
Q Consensus 1170 ~rs~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 1200 (1215)
-|++++.. +..|+.|..|+.
T Consensus 147 Ek~i~~~S-----------h~~~~~~~~w~~ 166 (168)
T COG5138 147 EKSIVVGS-----------HRRFQRFCAWLV 166 (168)
T ss_pred HHHHHHHh-----------HHHHHHHHHHHh
Confidence 99988765 567889988865
No 332
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.62 E-value=77 Score=34.52 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHhhc
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL--SDDLLAKATIEVVRNLRS 219 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~--~~~~~~~l~~~ll~~l~~ 219 (1215)
++.|+..|++.+..+..+-+..+..+....++.+++.+.+..+ -.-|..++..++... .+.++..++..++..+.+
T Consensus 16 sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~~~ 93 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKVLMDMLTD 93 (353)
T ss_pred ChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999888887775556666777788888888877665 445666777766532 122344555556666666
Q ss_pred CCCChHHHHHHHHHHHHHHh
Q 000941 220 KGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~ 239 (1215)
+.+ ...+..++++.++++
T Consensus 94 p~~--~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 94 PQS--PLADLICMLLSNLSR 111 (353)
T ss_pred ccc--chHHHHHHHHHHhcc
Confidence 655 345566666666655
No 333
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=48.45 E-value=2.4e+02 Score=27.21 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=61.7
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh-h--hccchhhh
Q 000941 176 LPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-R--FGPHLGDT 252 (1215)
Q Consensus 176 l~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~-~--~~~~l~~i 252 (1215)
+..|+.+..+++|.|--||-. .-+.+ .+.+.+++.+.+++. ..|-..++++..++..+-. . ..+|...+
T Consensus 14 L~~L~aS~qSi~kaa~fAlk~--~~~~e----dL~~cIle~le~~~l--N~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l 85 (139)
T PF12243_consen 14 LRRLNASQQSIQKAAQFALKN--RDMEE----DLWSCILEQLEKENL--NTRINIFYFIDSLCESSQKSKKYNYPYVSML 85 (139)
T ss_pred HHHcchhHHHHHHHHHHHHHc--cccHH----HHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHhcccccchhHHHH
Confidence 345555566788888888876 33333 466677777777654 4677788999998887642 2 35565444
Q ss_pred ---HHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 253 ---VPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 253 ---ip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
+|.++...-..+.....=+..+.+.|..|-.++
T Consensus 86 ~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~ 121 (139)
T PF12243_consen 86 QRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKK 121 (139)
T ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcC
Confidence 566665543211011123456777777776654
No 334
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=48.43 E-value=1.1e+02 Score=31.63 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhccc-----Chh
Q 000941 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK-----SIK 441 (1215)
Q Consensus 367 ~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~-----~~~ 441 (1215)
++..++..+++.--|+-+.||..+..++..++...... .+. -| +.+.+ .+.+... ++.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~-~~~------ip------~~~~L----~~i~~~~~~~~~~w~ 66 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPT-IPH------IP------HREEL----QDIFPSESEASLNWS 66 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccC------CC------cHHHH----HHHcccccccccccC
Confidence 44455555555556777899999999999998432110 000 01 11111 1111111 133
Q ss_pred hHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc
Q 000941 442 TKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 521 (1215)
Q Consensus 442 ~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 521 (1215)
.-..+|..+..|.. +..+...++.++.......+ ..+...+...|-..+..+ +.-...+..++..++..++
T Consensus 67 ~~~~~F~~l~~LL~-----~~~y~~~ll~Glv~S~G~~t--esl~~~s~~AL~~~~~~~--~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 67 SSSEYFPRLVKLLD-----LPEYRYSLLSGLVVSAGGLT--ESLVRASSAALLSYLREL--SDSPEELEQVLSDLLSILK 137 (193)
T ss_pred CHHHHHHHHHHHhc-----cHHHHHHHHhHHHhcCCCCc--hhHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHH
Confidence 34445555544432 23566677777777666533 344445555555555432 1112235556666665554
Q ss_pred C--CchHHHHHHHHHHHHHHHh
Q 000941 522 E--RYYKVTAEALRVCGELVRV 541 (1215)
Q Consensus 522 d--~~~~v~~~al~~l~~l~~~ 541 (1215)
+ ...++....+.++..+...
T Consensus 138 ~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 138 ENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HhCCCCCeeecHHHHHHHHHhC
Confidence 3 2336666777777777654
No 335
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.01 E-value=1.8e+02 Score=28.20 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH-HHHHHHhhhhcCC------CChhhHHHHHHHHHHHhh
Q 000941 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY-EVIIVELSTLISD------SDLHMTALALELCCTLMA 713 (1215)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~------~d~~~~~~al~~l~~l~~ 713 (1215)
...+..+..-|.+.|..+..-|+..|..++.++|..|..... ..+++++..+++. .+..+..-++..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345555666666777778888999999999999986543322 5567777777742 466777777777776665
Q ss_pred c
Q 000941 714 D 714 (1215)
Q Consensus 714 ~ 714 (1215)
.
T Consensus 117 ~ 117 (139)
T cd03567 117 E 117 (139)
T ss_pred H
Confidence 3
No 336
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=47.71 E-value=3e+02 Score=27.50 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHHHHhhhcccc-hhHHH--HHHH-HHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000941 360 RPEMLSKLYEEACPKLIDRFKERE-ENVKM--DVFN-TFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQL 435 (1215)
Q Consensus 360 ~~~~l~~~~~~i~p~Li~~~~d~e-~~Vr~--~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L 435 (1215)
+.+.+.++.+.+.|...+++.+++ .+|.. -++. ++...+.... .....+.+++.++.+++.+.+..
T Consensus 74 ~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e----------~~~~~~~vk~L~~~mv~Sv~elV 143 (174)
T PF04510_consen 74 YGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE----------SSMRVDLVKELLPKMVKSVKELV 143 (174)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888898888887764 33331 1221 1111121111 01233467888899999888887
Q ss_pred cccCh-hhHHHHHHHHHHHH
Q 000941 436 REKSI-KTKVGAFSVLRELV 454 (1215)
Q Consensus 436 ~~~~~-~~r~~~~~~l~~L~ 454 (1215)
+.... ..-+.|+.-+..++
T Consensus 144 ~~g~E~~~l~rgl~~~e~~v 163 (174)
T PF04510_consen 144 ERGMEVGFLRRGLRDFESFV 163 (174)
T ss_pred HcccHHHHHHHHHHHHHHHH
Confidence 65544 33334444444443
No 337
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=47.34 E-value=5.5e+02 Score=30.42 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHhCchhhhhhhhhhhH-HHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHH
Q 000941 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIP-GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA 518 (1215)
Q Consensus 440 ~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~-~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~ 518 (1215)
.+.|..|..+|+.++...+.. .+..+.. .+..+|+.++ ..-|.-+.-.+...++......-.+..+.+.+.+..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~s--a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPS--ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 358999999999999886432 2233332 4566666544 233555555556555544322222213455566666
Q ss_pred HhcCC---ch--------HHHHHHHHHHHHHHHh
Q 000941 519 AVGER---YY--------KVTAEALRVCGELVRV 541 (1215)
Q Consensus 519 ~l~d~---~~--------~v~~~al~~l~~l~~~ 541 (1215)
.++++ +| +++.++-..+..+...
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66522 22 4556665555555443
No 338
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=46.76 E-value=19 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=24.5
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHh
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~ 74 (1215)
.++.+++++.+++.+++..|+.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6778888899889999999999998875
No 339
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=46.18 E-value=34 Score=30.14 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
.|-.++..+++++.+.|..+.++++.++..+-.... +...++..+-.+|+.|-+...
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~----~~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAN----DPQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSS----S-SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHhCc
Confidence 456789999999999999999999999988766654 356788888888888766544
No 340
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=5.8e+02 Score=30.28 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCch--hHhhHHHHHHHhhhhcC
Q 000941 808 KCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFE--EIKSAASYALGNIAVGN 880 (1215)
Q Consensus 808 ~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e--~vR~aAa~aLG~l~~~~ 880 (1215)
+.+..+.-+.++++++++..+.-|++.||-...... .+++...+.+...+.+- ++---|+.+||.+-.|.
T Consensus 447 E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~---~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGt 518 (881)
T COG5110 447 ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQ---AEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGT 518 (881)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCc---HHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeec
Confidence 345566666667766544446667777765432221 25677777776655443 66667888999887653
No 341
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.75 E-value=2.5e+02 Score=25.94 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=52.4
Q ss_pred hHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhh--hhHHHHHHhhcccccceeeeccCceeecccChhHH
Q 000941 1001 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPE--LLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELR 1078 (1215)
Q Consensus 1001 ~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~--llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~R 1078 (1215)
..++..+.+.|++.+..+..-|+..|.+++.|++.-+...+.. ++-.+...... ++ ...+-|..+|
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~-----------~~-~~~~~~~~Vr 103 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKS-----------KL-LGDDVSTNVR 103 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcc-----------cc-ccCCCChHHH
Confidence 3456666678888999999999999999999999988776644 22222211000 00 1335689999
Q ss_pred HHHHHHHHHH
Q 000941 1079 KAAFECVDTL 1088 (1215)
Q Consensus 1079 k~A~~~l~~l 1088 (1215)
+.+.+.+.+.
T Consensus 104 ~k~~~l~~~w 113 (115)
T cd00197 104 EKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHH
Confidence 9999877654
No 342
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=45.57 E-value=51 Score=32.42 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=50.0
Q ss_pred CCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHH
Q 000941 16 KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLC 90 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~ 90 (1215)
.|+.+-.-|+.=|-+.+...+.....=..+-.++.++..|.++++++|..|+-.+..|..+.++.....+.+.|.
T Consensus 72 ~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 72 MDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred ccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 356666666666766665422111111122356788899999999999999999998888877776666666654
No 343
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=45.47 E-value=6.3e+02 Score=30.59 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhccCcccchhHH--HHHHHHHHhhccCh----hhHHHHHHHHHHHhc--CCCcchhhHHHHHHHHHHh
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGL--AVKCLAPLVKKVSE----PRVVEMTDKLCIKLL--NGKDQHRDIASIALKTIIA 113 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~--A~~~l~~l~~~~~~----~~~~~lv~~L~~~~~--~~~~~~r~~a~~aL~~~i~ 113 (1215)
+.+..++..+-+.+.++.=.-++. -+=.||.+...+++ +.+..++..|+..+. .+++. ..+.+.-+-.+++
T Consensus 477 Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdn-KAVvASnIMyvvG 555 (1053)
T COG5101 477 DTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDN-KAVVASNIMYVVG 555 (1053)
T ss_pred hHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCc-chhhecceeeeec
Confidence 556667777777777775544443 33345666655554 334566666666553 22222 2222222223343
Q ss_pred ccCc-hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh--------hhHHHHHHHHhhhhcCChH
Q 000941 114 EVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--------NDHERLLSALLPQLSANQA 184 (1215)
Q Consensus 114 ~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~--------~~~~~ll~~ll~~l~~~~~ 184 (1215)
.-|. -...-+.++.++-+|++.|... +..|+.-|||.+..+..++...+. ++...++.-+-....+=.+
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~--HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHED--HEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 3332 1122345677888999999765 578999999999999998876542 2334444444333333334
Q ss_pred HHHHHHHHHHHHHHhhcCHH
Q 000941 185 SVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~ 204 (1215)
.-...-..|+|.+....+..
T Consensus 634 qQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred HHHhHHHHHHhHHHhccchh
Confidence 44444555666655555443
No 344
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=45.09 E-value=1.1e+02 Score=28.75 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccC--hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHh
Q 000941 42 DLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVS--EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA 113 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~--~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~ 113 (1215)
+....+++.+.++|. ...+|.|-.+.-.++.|+.+.+ ++-+..++..++........ ..-+.++|-.++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 456889999999999 8889999999999999998755 34445555555544332222 1335555555554
No 345
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=44.69 E-value=28 Score=24.80 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.7
Q ss_pred hHHHHHHhcCCCchhHhhHHHHHHHhhh
Q 000941 850 IENVIIESFQSPFEEIKSAASYALGNIA 877 (1215)
Q Consensus 850 l~~~ll~~l~~~~e~vR~aAa~aLG~l~ 877 (1215)
..+.+++++.+++++++..|..+|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667888888888999999999999875
No 346
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.57 E-value=9.5e+02 Score=32.36 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=109.5
Q ss_pred HhcCCCcchhhhhHHHHHHHhccc--cCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh----ccChhhHHHH
Q 000941 12 KITGKDKDFRYMATSDLLNELNKE--SFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSEPRVVEM 85 (1215)
Q Consensus 12 ~~~~~d~d~R~mAl~dL~~~l~~~--~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~----~~~~~~~~~l 85 (1215)
-..+.--++|.-.+..|++.++.. +.-.+....-++++.+...-......+-.++..|+--+.. .++..-+..+
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~l 929 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDL 929 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHH
Confidence 345667788888888899988874 2222333444444444333333456677788888865443 4666777788
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHh----c-cCc-h--------------------hhHHHHHHhHhHHHHhhhhcc
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIA----E-VTT-S--------------------SLAQSIHTSLTPQLTKGITLK 139 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~----~-~~~-~--------------------~~~~~~~~~l~p~L~~~l~~~ 139 (1215)
++.+........+..-...+++|-=-+. . +.. . .+.+..+=.++..|.+...+.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 8888887755444333344444321111 1 000 0 000111111222222323332
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHhhhhcCCh------H---HHHH----HHHHHHHHHHhhcCHH
Q 000941 140 DMNTEIRCECLDILCDVLHKFGNLMSN--DHERLLSALLPQLSANQ------A---SVRK----KSVSCIASLASSLSDD 204 (1215)
Q Consensus 140 ~~~~~v~~~al~~L~~l~~~~g~~l~~--~~~~ll~~ll~~l~~~~------~---~vrk----~a~~~l~~l~~~~~~~ 204 (1215)
..+||.+|+.++-.++...|..+.+ ++.-+...+++.|+..+ + .++| ..+..|+.++..++..
T Consensus 1010 --r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1010 --RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred --hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 6899999999999999999998876 67777888888887321 1 2433 3455566666555443
No 347
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=44.40 E-value=1.7e+02 Score=31.45 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHHHHhChhhhcccH--HHHHHHHHHHhc
Q 000941 266 NDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLS 305 (1215)
Q Consensus 266 ~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~ 305 (1215)
..+.+|=.+++.++.+++....++-.|+ .+++|.|++.|.
T Consensus 108 ~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me 149 (262)
T PF04078_consen 108 PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME 149 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence 3577999999999999987766766666 488999999885
No 348
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=43.97 E-value=6.7e+02 Score=30.42 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHH-hcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhccc
Q 000941 1016 RHVRRAAVLALSTFA-HNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLD 1094 (1215)
Q Consensus 1016 ~~Vr~~a~~~L~~~~-~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~ 1094 (1215)
++-|-++...+++.+ .+-.+.+.....-++-.++..+.. ||..-.|+-.|.||+-|-.|-.+...|+.
T Consensus 799 PdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~-----------mi~kdf~EypEhr~~f~~Ll~~inl~sF~ 867 (1053)
T COG5101 799 PDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLI-----------MIVKDFDEYPEHRKNFLLLLENINLFSFS 867 (1053)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHH-----------HHHhhhhhChHHHHHHHHHHHHHHHHhHH
Confidence 455656655565543 443444444444455555555443 45557789999999999888888777632
Q ss_pred ---CCCchh---chHHHHhcccCC-cchhHhhHHHHHHHHHhhC
Q 000941 1095 ---QVNPSS---FIVPYLKSGLED-HYDVKMPCHLILSKLADKC 1131 (1215)
Q Consensus 1095 ---~~~~~~---~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~ 1131 (1215)
.++... ++ +.++=.++- ..||..++..++.-|+.++
T Consensus 868 afl~~p~p~Fklv~-nti~wsfkhi~RDv~~~gLnill~l~kn~ 910 (1053)
T COG5101 868 AFLSFPQPSFKLVY-NTILWSFKHINRDVSDLGLNILLILFKNC 910 (1053)
T ss_pred HHHcCCcHHHHHHH-HHHHHHHHhccchHhhhhhHHHHHHHHHH
Confidence 233333 33 233333444 4566666655555555543
No 349
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=43.87 E-value=3.8e+02 Score=28.87 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=33.6
Q ss_pred HHHHhccCCChH--HHHHHHHHHHHHHhcCcccccchhhhhhHHHHHH
Q 000941 1006 SFLMLIKDQDRH--VRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQ 1051 (1215)
Q Consensus 1006 ~~l~~l~D~d~~--Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~ 1051 (1215)
.+...+.|++.+ ||.+|+.+|..+++.+|.. ++.+-+.++.++..
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~-Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPIS-REEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH
Confidence 444567777655 9999999999999998886 66666666666654
No 350
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.97 E-value=3.1e+02 Score=26.23 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH-hHhHHHHhhhhcc-CCChhHHHHHHHHHHHHHHHh
Q 000941 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLK-DMNTEIRCECLDILCDVLHKF 160 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~-~~~~~v~~~al~~L~~l~~~~ 160 (1215)
...+..|-..+.++++.+.--|...|..++.+++. .+...+.. ..+..|...+... ..+..|+..+++++......|
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444555556666666654 23333332 3333444444332 336789999999998888877
Q ss_pred hh
Q 000941 161 GN 162 (1215)
Q Consensus 161 g~ 162 (1215)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 75
No 351
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=42.84 E-value=3e+02 Score=37.89 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 000941 152 ILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNI 231 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i 231 (1215)
.+.+.+..++..+..|.+.++...-..+.++++.++.-+......+-.....-.-++++..++.-+.+.+ +.....++
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~--~~ev~~aL 494 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGN--SQEVDAAL 494 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCc--HHHHHHHH
Confidence 4566666677778888999999999999999999999988888877776643222344444544443333 23456889
Q ss_pred HHHHHHHhhhhhhhccc
Q 000941 232 QMVGALSRAVGYRFGPH 248 (1215)
Q Consensus 232 ~~l~~l~~~~~~~~~~~ 248 (1215)
..+..++...+..+.||
T Consensus 495 ~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 495 DVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHhccHHHHHHH
Confidence 99999999888766665
No 352
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=42.25 E-value=69 Score=28.97 Aligned_cols=59 Identities=14% Similarity=0.332 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhh--hHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 227 IRTNIQMVGALSRAVGYRFGPHLGD--TVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 227 ~~~~i~~l~~l~~~~~~~~~~~l~~--iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
++..+..++.++...+.. ...+.. -+|.+++.+..+ +.++-+||.++.++..++..+++
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHH
Confidence 456677888888766521 222222 288999988763 56788999999999999998884
No 353
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=41.65 E-value=3.1e+02 Score=27.02 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcC
Q 000941 60 GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1215)
Q Consensus 60 ~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~ 95 (1215)
.+|-..++.|+-.++-|+.+....|+.-+|+.+...
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~ 70 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATS 70 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcc
Confidence 467788999999999999999999999999998754
No 354
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=41.37 E-value=5.6e+02 Score=33.29 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhccc-C--hhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhc
Q 000941 418 WLLKQEVSKIVKSINRQLREK-S--IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 477 (1215)
Q Consensus 418 ~~L~~~~p~i~~~l~~~L~~~-~--~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~ 477 (1215)
..|..++.-+++.+....... . ..+-...+..|..|+...|.....++...+..+...+.
T Consensus 464 ~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~ 526 (840)
T PF04147_consen 464 EKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFR 526 (840)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666676666655443 1 22333344555666666666656666666655544443
No 355
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.94 E-value=5.6e+02 Score=30.47 Aligned_cols=135 Identities=10% Similarity=0.080 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC-----hHHHHHHHHHHHHHHHhhcCHH--------HHHHH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN-----QASVRKKSVSCIASLASSLSDD--------LLAKA 209 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~-----~~~vrk~a~~~l~~l~~~~~~~--------~~~~l 209 (1215)
|.+-..-++++.-+++++++.+.+++..+.+.+..++.=. ++..-..-..++-.++.-+.+. ++..+
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~ef 650 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREF 650 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHH
Confidence 4566666777888899999999888889988888665421 1222222333444444333222 23446
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
++.++..+-..+...+...++..++-.+.-.-+..+ +.++.-+++.. .++..|.-...||..+....+
T Consensus 651 L~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y----~elvneL~skq-----~np~~~qrLa~Af~~Lt~sn~ 718 (748)
T KOG4541|consen 651 LRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLY----QELVNELISKQ-----ANPNFKQRLANAFQVLTTSNQ 718 (748)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHH----HHHHHHHHhhc-----cChHHHHHHHHHHHHHhccCC
Confidence 666666554333334677777888877766554444 44555555432 467777777777777766544
No 356
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.35 E-value=9e+02 Score=30.91 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=111.2
Q ss_pred HHHHHHHHhccCcc-----cchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc---cCc
Q 000941 46 KLSNIVVQQLDDVA-----GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE---VTT 117 (1215)
Q Consensus 46 ~i~~~ll~~L~D~~-----~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~---~~~ 117 (1215)
.+.-.+..+|..|. +.+|..=-..+..+..+-+......+++.++-.+.+++++.|.=|...++.+-.. +..
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 45555566666542 2345544445554443322222256677777777777777788787777765432 222
Q ss_pred hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh-hhhh------HHHHHHHHhhhhcCChHHHHHHH
Q 000941 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSND------HERLLSALLPQLSANQASVRKKS 190 (1215)
Q Consensus 118 ~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~-l~~~------~~~ll~~ll~~l~~~~~~vrk~a 190 (1215)
.++-..+.+.+...+... +....++.....-=..+..+++.+... +..+ .+ +...++..|.++....-.-.
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 222233344444444332 222112222222222344444433322 1111 23 67777777776633333456
Q ss_pred HHHHHHHHhhcCHHHHH--------HHHHH---------HHHHhhcCCCChHH--HHHHHHHHHHHHhhhh-hhhccchh
Q 000941 191 VSCIASLASSLSDDLLA--------KATIE---------VVRNLRSKGAKPEM--IRTNIQMVGALSRAVG-YRFGPHLG 250 (1215)
Q Consensus 191 ~~~l~~l~~~~~~~~~~--------~l~~~---------ll~~l~~~~~~~~~--~~~~i~~l~~l~~~~~-~~~~~~l~ 250 (1215)
+.|+..|....+.+++. .+++. ++.....+...... ....+.=+..+.++.+ .+-.+...
T Consensus 235 L~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~ 314 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACR 314 (727)
T ss_pred HHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHH
Confidence 67888777777766532 12221 22222221111011 1123344444444443 23355667
Q ss_pred hhHHHHHHhhcccCCCcHHHHHHHHHHH
Q 000941 251 DTVPVLIDYCTSASENDEELREYSLQAL 278 (1215)
Q Consensus 251 ~iip~ll~~~~~~~~~d~elre~al~~l 278 (1215)
.++..+++.++.. ...++.|.+|+.+.
T Consensus 315 ~l~~~Ll~~~q~~-~~~~~~r~~c~~~~ 341 (727)
T PF12726_consen 315 KLLHFLLERLQHD-RFPDEARAACLRAG 341 (727)
T ss_pred HHHHHHHHHHhcc-ccchhHHHHHHHHH
Confidence 7888888877653 23344777777643
No 357
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.81 E-value=1.6e+03 Score=33.77 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH----HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh---h
Q 000941 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ----EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC---L 461 (1215)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~----~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~---l 461 (1215)
.-+..+.++++..|. |..+.+.. .+|.+++.+.+.+.... ++.--.++.+++.+.|-- +
T Consensus 650 nYf~LLraLFRsigG-----------g~~d~ly~e~lplL~~lLe~ln~l~~~~~---s~~mkdLfvELclTvPvRLS~L 715 (3550)
T KOG0889|consen 650 NYFQLLRALFRSIGG-----------GAFDSLYREVLPLLPNLLEILNHLLSSFH---SQGMKDLFVELCLTLPVRLSSL 715 (3550)
T ss_pred hHHHHHHHHHHHhhc-----------cchHhHHHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHhhhHHHHHh
Confidence 345667778887763 12222322 34555555544443322 222235677777777653 5
Q ss_pred hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc----C-CchHHHHHHHHHHH
Q 000941 462 ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG----E-RYYKVTAEALRVCG 536 (1215)
Q Consensus 462 ~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~----d-~~~~v~~~al~~l~ 536 (1215)
.||++-++..+..+++.+ +.+...++..+--.+.+..|+.+.|++++..+.+++++- + +.+.....|+.++|
T Consensus 716 lpylp~LM~PLv~aLkgs---~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 716 LPYLPLLMKPLVFALKGS---PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhHHHHHhcCC---HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 689999999999999853 678889999999889998888888888888888877763 2 14566777888888
Q ss_pred HHHHh----ccCCC------------------cCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 000941 537 ELVRV----LRPSV------------------EGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587 (1215)
Q Consensus 537 ~l~~~----~~~~~------------------~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~ 587 (1215)
.+-.. +.++. .+....+.-.+.+.+...+..+.....|...|..|...+-.
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~ 865 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRC 865 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHH
Confidence 76421 11100 00011222234556666666666666677777777665554
No 358
>PF14961 BROMI: Broad-minded protein
Probab=39.81 E-value=2.9e+02 Score=36.23 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=48.2
Q ss_pred HHHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC
Q 000941 5 QMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1215)
Q Consensus 5 ~l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~ 78 (1215)
.+..+++++ .+--+++|.-|+.-|++.=..+-. ..+.=..+...|...|.||++.+...+.+..+.+....+
T Consensus 162 ~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVl--s~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 162 QLQLIADKLDPGQPKEVRLEALQILCSAPPSDVL--SCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChhhcc--ccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 355667776 334467888888888766433322 224455667778888888888888888888887765433
No 359
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=7.2e+02 Score=29.59 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChh
Q 000941 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLH 699 (1215)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~ 699 (1215)
+.++..|..++.+++..++.+++--|+..... ...++++.-+.|++.+.|..
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsG-------t~~eevl~lL~Pi~~std~p 500 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSG-------TQAEEVLELLQPIMFSTDSP 500 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcC-------CcHHHHHHHhhhhhcCCCCc
Confidence 45667778888887777777777666654432 23477888888888777764
No 360
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=39.48 E-value=6.4e+02 Score=28.93 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=52.0
Q ss_pred ecccChhHHHHHHHHHHHHHhhcc--cCCCchhchHHHHhcccCCc-chhHhhHHHHHHHHHhhChhhHHHhHHHhhHHH
Q 000941 1070 TVDDGLELRKAAFECVDTLLDSCL--DQVNPSSFIVPYLKSGLEDH-YDVKMPCHLILSKLADKCPSAVLAVLDSLVDPL 1146 (1215)
Q Consensus 1070 ~~Ddgl~~Rk~A~~~l~~ll~~~~--~~~~~~~~~~~~~~~gl~D~-~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l 1146 (1215)
.++|-...|+.|.+.+--+++.|. +.-...+-+.+++-.-.+|+ .--.-..|.+|.+++..+|..|...++.+-+.+
T Consensus 267 ~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l 346 (373)
T PF14911_consen 267 LVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSL 346 (373)
T ss_pred hcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345566788899998888888873 22223333323333333331 123345688899999999999998777777766
Q ss_pred Hhh
Q 000941 1147 QKT 1149 (1215)
Q Consensus 1147 ~~~ 1149 (1215)
+.+
T Consensus 347 ~~~ 349 (373)
T PF14911_consen 347 KDS 349 (373)
T ss_pred HHH
Confidence 665
No 361
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=38.36 E-value=3.9e+02 Score=26.40 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH--HHHHHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL--AKATIEVVRN 216 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~--~~l~~~ll~~ 216 (1215)
..++|..+.-+++.+++..+..........+... +..++..-...++.++..+-+..++- +| +.+++.++..
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~---~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESL---LDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 4678999998898887666654433333333333 33334456667888888777665553 22 3456666665
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHH-HHHHHHHHH
Q 000941 217 LRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEE-LREYSLQAL 278 (1215)
Q Consensus 217 l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~e-lre~al~~l 278 (1215)
......+......+++++.+-|..-..+ .--...-++.+-+..+. .+++. +|-.|+-.|
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~--~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKN--SKDDSEIRVLAAVGL 154 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTT--CC-HH-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHcc--ccchHHHHHHHHHHH
Confidence 5522222344555566665544322111 11224445555555542 23444 666555443
No 362
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=37.02 E-value=9.4e+02 Score=30.13 Aligned_cols=65 Identities=25% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHhccCcccchhHHHHHHHHHHhh---ccChhhHHHH--HHHHHHHhcCCCcchhhHHHHHHHHHHh
Q 000941 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVK---KVSEPRVVEM--TDKLCIKLLNGKDQHRDIASIALKTIIA 113 (1215)
Q Consensus 48 ~~~ll~~L~D~~~~Vq~~A~~~l~~l~~---~~~~~~~~~l--v~~L~~~~~~~~~~~r~~a~~aL~~~i~ 113 (1215)
++.++..|..+++.||..|.--+..+.. +++. .+..+ ++.|+..+...+.+++..++-||++++=
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~-~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKS-RVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHH-HHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 4555566678999999988876665542 1111 22233 7788888888888888899999998873
No 363
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=36.95 E-value=3.6e+02 Score=26.17 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=49.4
Q ss_pred HHHHHHHHHhc-ccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHH-HHHhhcCCC-CcchhHHHHHHHHHHHhcc
Q 000941 426 KIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPG-IEKSLNDKS-STSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 426 ~i~~~l~~~L~-~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~-l~~~l~d~~-~~~~~~~~al~~l~~l~~~ 499 (1215)
..+++|.+.+. .+++.+..-++.+|..++...|..|..++ ..++.. +.+.+..+. ....++...+.++......
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45677777776 45777888889999999998877665432 245555 556665443 2246777777777766543
No 364
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.48 E-value=45 Score=22.11 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q 000941 343 WKVRRAAAKCLAAL 356 (1215)
Q Consensus 343 wkvR~~Aa~~L~~l 356 (1215)
|.||..|+.+|+.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 78999999999976
No 365
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=32.97 E-value=1e+02 Score=31.78 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=58.3
Q ss_pred HHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHH
Q 000941 947 VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLAL 1026 (1215)
Q Consensus 947 aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L 1026 (1215)
+...+|.+....+.. +.+.+...+++...|..++..+-..+.+ ...+..++..+-..+.|++.-||+++..+|
T Consensus 93 ~~~~~~~~~~~~~~~--~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L 165 (197)
T cd06561 93 CANLLGKLLYAEPEL--DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWAL 165 (197)
T ss_pred HHHHHHHHHhcCcch--HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333444443333332 6777777888888776655555443333 112334444444567788889999999999
Q ss_pred HHHHhcCcccccchhhh
Q 000941 1027 STFAHNKPNLIKGLLPE 1043 (1215)
Q Consensus 1027 ~~~~~~~p~~i~~~l~~ 1043 (1215)
.......|+.+.+++..
T Consensus 166 ~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 166 REYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHhhCHHHHHHHHHH
Confidence 99998889887777655
No 366
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=31.71 E-value=6.6e+02 Score=26.79 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhChhhhcccH--HHHHHHHHHHhc
Q 000941 265 ENDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLS 305 (1215)
Q Consensus 265 ~~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~ 305 (1215)
-.++-+|-.++..++.+++.-..++-.|+ .+|+|.|++.|.
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 35678999999999999998887777776 588999999873
No 367
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=31.62 E-value=1e+02 Score=26.01 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHH--HHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Q 000941 617 RLTAVKAFAVIAASPLHIDLTCVLE--HVIAELTAFLR-KANRALRQATLGTMNSLVVA 672 (1215)
Q Consensus 617 r~~a~~al~~i~~s~~~~~~~~~l~--~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~ 672 (1215)
.+.|+.|++.++.++.+ -++++ ++++.+..... .+...+|..++-+|+.+...
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 35788888888876544 33443 46777766665 45678999999999988754
No 368
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=31.21 E-value=4e+02 Score=32.67 Aligned_cols=151 Identities=12% Similarity=0.147 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--------------CcchhhHHHHH
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--------------KDQHRDIASIA 107 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--------------~~~~r~~a~~a 107 (1215)
...+-+++.+..-++|.+..||.++.+-++....+++....+..++ +.+.+... .++..-+.+++
T Consensus 242 ~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 242 IYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 4556677888888888889999999999999999888755555554 44333211 01111111222
Q ss_pred HHHHHhccCchhhHHHHHHhHhHHHHhhhhccCC------ChhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHhh-hh
Q 000941 108 LKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDM------NTEIRCECLDILCDVLHKFGNLMSNDHER-LLSALLP-QL 179 (1215)
Q Consensus 108 L~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~------~~~v~~~al~~L~~l~~~~g~~l~~~~~~-ll~~ll~-~l 179 (1215)
.-.+.+-.+- ++...+ +.|.+..++..++. ...+|..++-++=.+.++....+.+.... +...++. .+
T Consensus 321 ~~ala~~~~i-d~~d~~---i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 321 FFALAGAGLI-DYSDCL---ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHhhcccc-chhhhh---hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 1111111111 222222 33444444443210 23577777777777777766666655443 3344444 56
Q ss_pred cCChHHHHHHHHHHHHHH
Q 000941 180 SANQASVRKKSVSCIASL 197 (1215)
Q Consensus 180 ~~~~~~vrk~a~~~l~~l 197 (1215)
=||+-.+|+.|..++-.+
T Consensus 397 FDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 397 FDPELNVRRAATAALFEV 414 (993)
T ss_pred cCchhhhhhHHHHHHHHH
Confidence 678889999888877544
No 369
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=30.72 E-value=1.4e+02 Score=25.08 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhc-CHHHHH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh
Q 000941 187 RKKSVSCIASLASSL-SDDLLA--KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1215)
Q Consensus 187 rk~a~~~l~~l~~~~-~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1215)
.|.|+-|+++++..- +-.+++ ++++.+++...+.+. -.+|-+++-++|-++++.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCCH
Confidence 578999999998753 333444 588888888776543 368999999999999864
No 370
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=29.84 E-value=1.1e+02 Score=27.04 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
.-|.+++..|++++..+|-.++++...++..|-...++ ...|+..+=+++...-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 35779999999999999987777777777776544455 455677766677776554
No 371
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.82 E-value=1.2e+03 Score=31.19 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000941 149 CLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1215)
Q Consensus 149 al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1215)
++-.|.+++-.-...+.++.|.++.+.+-.+++..+.|++.|-..|-.|..
T Consensus 936 alifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 936 ALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHH
Confidence 566788888777777778999999999999999999999999988877664
No 372
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.81 E-value=1.8e+03 Score=30.82 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=84.9
Q ss_pred HHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHH
Q 000941 353 LAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1215)
Q Consensus 353 L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~ 432 (1215)
+...+..++..+.+++..++...-..++..++.|+.-....|..+...-. .. .-..++..+.
T Consensus 418 l~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----------------s~--~qqeVv~~Lv 479 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----------------SY--CQQEVVGALV 479 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----------------HH--HHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----------------ch--hHHHHHHHHH
Confidence 44444445555555666555544344578888888766666666665321 11 1245565555
Q ss_pred HHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhh
Q 000941 433 RQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKAL 512 (1215)
Q Consensus 433 ~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l 512 (1215)
..+.+.+....-+|+.+|..|+...+..+.+|- .++..++..+.+-+ ...+| ..+..+..+.-... ..-...-+.+
T Consensus 480 thi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa-~~l~giLD~l~~Ls-~~qiR-~lf~il~~La~~~~-~~~s~i~del 555 (1426)
T PF14631_consen 480 THIGSGNSQEVDAALDVLCELAEKNPSELQPFA-TFLKGILDYLDNLS-LQQIR-KLFDILCTLAFSDS-SSSSSIQDEL 555 (1426)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTH-HHHHGGGGGGGG---HHHHH-HHHHHHHHHHHHHS-S---HHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHhcCC-HHHHH-HHHHHHHHHhcCCc-ccchhhHHHH
Confidence 555445554556889999999998877766653 33334444554322 12333 22444444432211 1111123444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 000941 513 SSPVLAAVGERYYKVTAEALRVCGELVRVLR 543 (1215)
Q Consensus 513 ~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1215)
.-.+-+.+.....+....++-..-.++..+.
T Consensus 556 ~ivIRKQLss~~~~~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 556 HIVIRKQLSSSNPKYKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Confidence 4455666776666655544433333444443
No 373
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=27.43 E-value=1.2e+03 Score=28.48 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=56.3
Q ss_pred hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 000941 464 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1215)
Q Consensus 464 ~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1215)
++.+++..+...+.... +..+|...+.|++.+.+..-|+..++ ..+.+.......+.|++|-+...|+.+++.+++.
T Consensus 476 ~i~qv~~~l~~l~~~~p-p~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEP-PDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHHHHhhCC-CccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 67777777777775332 24589999999999977665655553 4555544455566899999999999999999864
No 374
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=27.24 E-value=82 Score=31.64 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHhcCC--CchhHhhHHHHHHHhhhhcCcccchHHHHHHhhccc
Q 000941 854 IIESFQS--PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 896 (1215)
Q Consensus 854 ll~~l~~--~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 896 (1215)
.+.+|+. +++.||+-|..+|.++....+..|||++++.++-++
T Consensus 74 aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 74 ALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccc
Confidence 4455542 358999999999999888888999999999998764
No 375
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.09 E-value=5.7e+02 Score=30.35 Aligned_cols=88 Identities=14% Similarity=0.256 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
+.+..|.+.+.+.+. .+...++.++.++++.||+.|...+ ..+++-++...... .-+..+|+-.+..++.|-...
T Consensus 38 eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~-~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK-PRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC-CcchhHHHHHHHHHHHHHHHc
Confidence 345556666665443 5667889999999999999887654 44666666666643 267889999999999998876
Q ss_pred hhhhcccHHHHHHH
Q 000941 286 PRDISSYCDEILHL 299 (1215)
Q Consensus 286 ~~~~~~~l~~ii~~ 299 (1215)
+ ....|++.....
T Consensus 115 ~-~~~~~~~~~~~~ 127 (470)
T KOG1087|consen 115 C-GPDGYLPDYYQI 127 (470)
T ss_pred c-CCCCcchhHHHH
Confidence 6 334455555443
No 376
>PF09462 Mus7: Mus7/MMS22 family; InterPro: IPR019021 Methyl methanesulphonate-sensitivity protein 22 (MMS22), along with MMS1, is involved in protection against replication-dependent DNA damage. MMS22 may act by restoring active replication forks, repairing unusual DNA structures, and/or preventing aberrant DNA rearrangement at arrested replication forks, including the repair of double-stranded DNA breaks created by the cleavage reaction of topoisomerase II [].
Probab=27.05 E-value=1.3e+03 Score=28.74 Aligned_cols=47 Identities=28% Similarity=0.177 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHH
Q 000941 441 KTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEA 489 (1215)
Q Consensus 441 ~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~a 489 (1215)
..|+-+..++..+++..+..+..+-..++.....+|-.+. ..++.+.
T Consensus 468 ~~rkf~p~Fl~~ll~~d~~~f~~~~~~il~~wl~sLv~~~--~~l~~e~ 514 (614)
T PF09462_consen 468 QRRKFLPLFLANLLEHDPDDFSDCKESILELWLLSLVKRS--SSLKFEH 514 (614)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhccc--hhHHHHH
Confidence 4677778888999988888888888888888888877654 4455443
No 377
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=26.68 E-value=2.6e+02 Score=24.07 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHH
Q 000941 1118 MPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAI 1177 (1215)
Q Consensus 1118 ~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~~rs~l~~~ 1177 (1215)
.++...+..++...|....+.+..+.+-||.++..+-+.-++++|+ +.+++-+...
T Consensus 15 ~NtLn~I~~l~~~~~~~~~~~i~~ls~~lRy~l~~~~~~v~l~~El----~~i~~Yl~i~ 70 (82)
T PF06580_consen 15 FNTLNSISWLARIDPEKASEMILSLSDLLRYSLSSKEEFVTLEEEL----EFIENYLEIQ 70 (82)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCCCeeeHHHHH----HHHHHHHHHH
Confidence 3566678888998899999999999999999996665667889998 5455555443
No 378
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=26.51 E-value=1.4e+03 Score=29.04 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=68.5
Q ss_pred hHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC---h--hhHHHHHHHHHHHhcCC-C
Q 000941 24 ATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS---E--PRVVEMTDKLCIKLLNG-K 97 (1215)
Q Consensus 24 Al~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~---~--~~~~~lv~~L~~~~~~~-~ 97 (1215)
|+.-..+.|..-+-++ .--...++.++.++|++.++++|-.+..++..++..-. . .....++++.++.+.+. .
T Consensus 76 amea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~ 154 (819)
T KOG1877|consen 76 AMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGD 154 (819)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccc
Confidence 4455555555443333 45567789999999999999999999999999984322 1 12467888888887653 2
Q ss_pred cc----hhhHHHHHHHHHHhccCchhhHHH-----HHHhHhHHHHhhhh
Q 000941 98 DQ----HRDIASIALKTIIAEVTTSSLAQS-----IHTSLTPQLTKGIT 137 (1215)
Q Consensus 98 ~~----~r~~a~~aL~~~i~~~~~~~~~~~-----~~~~l~p~L~~~l~ 137 (1215)
++ .|-....||+.++-..-.+.+... ..+.++|.+.-.++
T Consensus 155 ~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 155 DDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred hhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhc
Confidence 22 333444566655533211112111 25566776664443
No 379
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.36 E-value=34 Score=42.13 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=11.1
Q ss_pred CCcchhhhhHHHHHHHh
Q 000941 16 KDKDFRYMATSDLLNEL 32 (1215)
Q Consensus 16 ~d~d~R~mAl~dL~~~l 32 (1215)
+||.+|..|++-+.+.+
T Consensus 674 ~Dpei~~~AL~vIincV 690 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCV 690 (1516)
T ss_pred cCHHHHHHHHhhhheee
Confidence 46677777776666654
No 380
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=26.29 E-value=1.5e+03 Score=29.12 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=66.6
Q ss_pred HhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhccCchhhHHHHHHhHhH
Q 000941 53 QQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTP 130 (1215)
Q Consensus 53 ~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p 130 (1215)
....++++.+++.|..-|-+.=.. ....-+|.....+. +-..|-+|.+-+|+-|.. +|+.
T Consensus 11 ~~aqs~~p~s~k~AE~~Lrqwe~q------~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~---------~W~~--- 72 (947)
T COG5657 11 DLAQSPDPPSVKCAEERLRQWEKQ------HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDK---------HWRE--- 72 (947)
T ss_pred HhhcCCCCchHhhHHHHHHhhhcc------ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHH---------Hhhh---
Confidence 455678888999988777655321 12444555544443 234677777777765531 1110
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 000941 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKAT 210 (1215)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~ 210 (1215)
.--.++.- +.++ .+-..++..+-+.+..+.-.-..|++.+|...-.+.|+.++
T Consensus 73 ~~~~~i~p---~e~v------------------------~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~ 125 (947)
T COG5657 73 ENGNSILP---DENV------------------------LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLV 125 (947)
T ss_pred hcccCCCC---ccch------------------------HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHH
Confidence 00000000 1111 12222233332223333335677888888887777789999
Q ss_pred HHHHHHhhcC
Q 000941 211 IEVVRNLRSK 220 (1215)
Q Consensus 211 ~~ll~~l~~~ 220 (1215)
+.++..+++.
T Consensus 126 ~DL~~~Ls~~ 135 (947)
T COG5657 126 PDLLSLLSEK 135 (947)
T ss_pred HHHHhhhccc
Confidence 9999888763
No 381
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.01 E-value=1.1e+03 Score=27.39 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhCchhh---hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHH
Q 000941 419 LLKQEVSKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCL---ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 494 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~-~~~r~~~~~~l~~L~~~~~~~l---~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~ 494 (1215)
.+.+.-=.|++.+.+.|..++ +..-..|+.=++++++..|.+- .++-. =..+.+.+++++ +++|.+|+.++.
T Consensus 359 rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~gg--Ke~vM~Llnh~d--~~Vry~ALlavQ 434 (442)
T KOG2759|consen 359 RLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGG--KERVMNLLNHED--PEVRYHALLAVQ 434 (442)
T ss_pred HHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhch--HHHHHHHhcCCC--chHHHHHHHHHH
Confidence 455555688899999997766 4444556667788888887642 22110 123445556544 789999999988
Q ss_pred HHhcc
Q 000941 495 LVLSS 499 (1215)
Q Consensus 495 ~l~~~ 499 (1215)
.++.+
T Consensus 435 ~lm~~ 439 (442)
T KOG2759|consen 435 KLMVH 439 (442)
T ss_pred HHHhh
Confidence 87653
No 382
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=25.21 E-value=7.6e+02 Score=28.43 Aligned_cols=218 Identities=15% Similarity=0.183 Sum_probs=106.4
Q ss_pred HHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCC
Q 000941 684 VIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANT 763 (1215)
Q Consensus 684 ~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~ 763 (1215)
.++..|..++.+.|+.-|++.-.+|-++... .+.-...+...+-..+++.+.+.- ......-++..++.+......
T Consensus 177 ~FvlkLLdLFdSEDpRERe~LKT~LhrIygK---fl~~r~firk~iNNif~~FIyEte-~hnGIaELLEIlgSiIngfAl 252 (457)
T KOG2085|consen 177 KFVLKLLDLFDSEDPREREFLKTILHRIYGK---FLVHRPFIRKSINNIFLRFIYETE-RHNGIAELLEILGSIINGFAL 252 (457)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhhHHHHHHhhcchhhhhccccc-ccCCHHHHHHHHHHhcCcccC
Confidence 3566677888899999998888777666542 121111222222233333333222 111223344444444322211
Q ss_pred ChH----H-HHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCCchhhHHHHHHHhhh
Q 000941 764 SFD----T-LLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSHLALLCLGEI 838 (1215)
Q Consensus 764 ~~~----~-l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~lal~~lgei 838 (1215)
.++ - +...|+ ++-..+.-..-|.| ++-|+-.+... +...+..++..++.+--..-+......|.-++||
T Consensus 253 PlKEEhkiFL~rvLi-pLhk~k~l~~yh~Q----LaYcivQfveK-d~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEI 326 (457)
T KOG2085|consen 253 PLKEEHKLFLVRVLI-PLHKPKSLSLYHKQ----LAYCIVQFVEK-DPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEI 326 (457)
T ss_pred cchhHHHHHHHHhhh-ccccCCCccccccc----cceeeeeeecc-CccccHHHHHHHHHhcCCCCCcceeeeHhhHHHH
Confidence 111 1 122222 11111000111122 33344333221 1113455666666554222233456777788888
Q ss_pred hccCCCCCcc----chHHHHHHhcCCCchhHhhHHHHHH-----HhhhhcCcccchHHHHHHhhcccc------hhHHHH
Q 000941 839 GRRKDLSSHE----HIENVIIESFQSPFEEIKSAASYAL-----GNIAVGNLSKFLPFILDQIDNQQK------KQYLLL 903 (1215)
Q Consensus 839 ~~~~~~~~~~----~l~~~ll~~l~~~~e~vR~aAa~aL-----G~l~~~~~~~~lp~il~~l~~~~~------~~~~~l 903 (1215)
-..+..+.+. .+...+-.+++++.-.|-.-|.+-. -.+...|...++|-+...+....+ ...+.+
T Consensus 327 Le~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~ 406 (457)
T KOG2085|consen 327 LEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLIL 406 (457)
T ss_pred HHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHH
Confidence 7766554333 3445555666777665554444322 345678888999999888865432 245566
Q ss_pred HHHHHHHh
Q 000941 904 HSLKEVIV 911 (1215)
Q Consensus 904 ~alke~i~ 911 (1215)
..+|-++.
T Consensus 407 nvlk~f~e 414 (457)
T KOG2085|consen 407 NVLKTFME 414 (457)
T ss_pred HHHHHHHH
Confidence 66665543
No 383
>PRK13689 hypothetical protein; Provisional
Probab=24.36 E-value=1.6e+02 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=30.9
Q ss_pred HhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc
Q 000941 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1215)
Q Consensus 73 l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~ 114 (1215)
...+++.++++.++..++.-+.+-+. -.|.+.++|++++.+
T Consensus 3 i~SKYsd~qvE~il~el~~VLeKH~A-p~DLSLMvLGN~vTn 43 (75)
T PRK13689 3 QQSKYSDEQVEQLLAELLAVLEKHKA-PTDLSLMVLGNMVTN 43 (75)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 34678889999999999988754322 258899999987754
No 384
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=24.35 E-value=6.5e+02 Score=27.31 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh--hhh---hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC--LAD---HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~--l~~---~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
+.....+.+.+.......+--++.+++-++...+.. +.. +....+..+.....+. .....+.-++.++..++.+
T Consensus 62 ~~~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 62 SAWLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS-SPPANQMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT-SSHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC-CcHHHHHHHHHHHHHhhCC
Confidence 344455555555555567777888886665432211 111 1122333333222222 3356777889999999875
Q ss_pred CCCCc-chhhhh-hhHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCC
Q 000941 500 HSPPV-FHPYIK-ALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD 574 (1215)
Q Consensus 500 ~~~~~-~~~~l~-~l~p~l~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~ 574 (1215)
..... +..+.. .++..+....... +..++..+-.++-++.-...... .-.+.-.+++..+.+.+.....|
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~-----~~~~~~~~ll~~i~~~~~~~~~d 215 (268)
T PF08324_consen 141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR-----SDEEWQSELLSSIIEVLSREESD 215 (268)
T ss_dssp CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT-----S-CCHHHHHHHHHHHHCHCCHTS
T ss_pred CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHhccccCC
Confidence 33211 112333 3434433333322 33444444444555543332211 01122333555555544444457
Q ss_pred HHHHHHHHHHHHHHH
Q 000941 575 QEVKECAISCMGLVI 589 (1215)
Q Consensus 575 ~~Vr~~Ai~~lg~l~ 589 (1215)
.|+.-+++.|+|.++
T Consensus 216 ~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 216 EEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888889999999988
No 385
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=24.03 E-value=9.7e+02 Score=26.20 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=4.0
Q ss_pred HHHHHHHHHHhhh
Q 000941 229 TNIQMVGALSRAV 241 (1215)
Q Consensus 229 ~~i~~l~~l~~~~ 241 (1215)
...+..|.+=.+|
T Consensus 98 ~~~~~tG~VWeaC 110 (275)
T PF13324_consen 98 EVLQSTGRVWEAC 110 (275)
T ss_dssp -------HHHHHH
T ss_pred hhHHHHhHHHHHH
Confidence 4456777776666
No 386
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=24.03 E-value=7.7e+02 Score=25.03 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHH-HhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVV-QQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll-~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
+..++.|++ +.--.....++.+..... ++.....++..++ +...+| .-....++.++.+....+......
T Consensus 4 v~~~lnklt---~~n~~~~~~~l~~~~~~~----~~~~~~~i~~~i~~~a~~~~--~~~~~~a~l~~~l~~~~~~~f~~~ 74 (209)
T PF02854_consen 4 VRGILNKLT---PSNFESIIDELIKLNWSD----DPETLKEIVKLIFEKAVEEP--NFSPLYARLCAALNSRFPSEFRSL 74 (209)
T ss_dssp HHHHHHHCS---STTHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHhhhhhcCc--hHHHHHHHHHHHHhccchhhHHHH
Q ss_pred HHHHHHHHhcC--------CCcchhhHHHHHHHHHHhccCc-hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHH
Q 000941 85 MTDKLCIKLLN--------GKDQHRDIASIALKTIIAEVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1215)
Q Consensus 85 lv~~L~~~~~~--------~~~~~r~~a~~aL~~~i~~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1215)
++..+...+.. .......--..++-.++.++-. .-+.....-.++-.++........ +.-....++++..
T Consensus 75 ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~-~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 75 LLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ-PPPDEENIECLCT 153 (209)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc-CCCcHhHHHHHHH
Q ss_pred HHHHhhhhhh--hhHHHHHHHHhhhhc
Q 000941 156 VLHKFGNLMS--NDHERLLSALLPQLS 180 (1215)
Q Consensus 156 l~~~~g~~l~--~~~~~ll~~ll~~l~ 180 (1215)
++...|..+. +..+..+..++..+.
T Consensus 154 lL~~~G~~l~~~~~~~~~l~~~~~~~~ 180 (209)
T PF02854_consen 154 LLKTCGKKLENSEESPKALDEIFERLQ 180 (209)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHH
No 387
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.76 E-value=1.9e+03 Score=29.50 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000941 484 NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1215)
Q Consensus 484 ~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1215)
.+....+..+..++..+. ...-.+..++..++-.+.++...|+..|+..+..+-.
T Consensus 518 ~va~gYF~vlaev~~~~~--~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 518 RVAEGYFTVLAEVFSERE--YPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred hHHHHHHHHHHHHHHcCC--CCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 344445555666654322 2222456888888999999999999999998877643
No 388
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=1.1e+03 Score=26.51 Aligned_cols=177 Identities=8% Similarity=0.115 Sum_probs=91.6
Q ss_pred HHHHHh-HhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcCCh-HHHHHHHHHHHHHH
Q 000941 122 QSIHTS-LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSANQ-ASVRKKSVSCIASL 197 (1215)
Q Consensus 122 ~~~~~~-l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~~~-~~vrk~a~~~l~~l 197 (1215)
+.+.+. ++..|+++++-.- ++++-.+.+..|+.+.-+-.- .... ..=++.++.++++.+ ..+|..+-+|++.|
T Consensus 235 r~ia~e~~l~~L~Eal~A~~-dp~~L~~l~~tl~~lAVr~E~--C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 235 RTIAKEGILTALTEALQAGI-DPDSLVSLSTTLKALAVRDEI--CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred HHHHHhhhHHHHHHHHHccC-CccHHHHHHHHHHHHHHHHHH--HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 334443 3566666666543 467777777777766554221 1111 112566777777643 35665555555544
Q ss_pred HhhcCHH-----HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh-hhHHHHHHhhcccCCCcHHH
Q 000941 198 ASSLSDD-----LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEEL 270 (1215)
Q Consensus 198 ~~~~~~~-----~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~el 270 (1215)
-...+.+ +. ..-.+.++..+..-..++.+...++-++..++-..|+.-...+. ..-...++.++.. +....+
T Consensus 312 ralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P~~a~v 390 (461)
T KOG4199|consen 312 RALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-PVAAQV 390 (461)
T ss_pred HHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-cHHHHH
Confidence 4433332 21 12233333333222223467778888888888887754333331 2333444555421 233456
Q ss_pred HHHHHHHHHHHHHhChhhhcccHHHHHHHHHH
Q 000941 271 REYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1215)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1215)
...+.+.+.+++.+-...-.+.+.-=++-+++
T Consensus 391 Qrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~ 422 (461)
T KOG4199|consen 391 QRNACNMIRNIVVRSAENRTILLANGIEKLIR 422 (461)
T ss_pred HHHHHHHHHHHHHhhhhccchHHhccHHHHHH
Confidence 66677778888776554444444433443333
No 389
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.49 E-value=7.4e+02 Score=24.61 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1215)
+..+...|+.+|..++.+-...-.. ..+.-++.++..|+.++..++..|+..+.++....++.--..+
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 5778889999998888764332111 1233356667777778889999999999888777766543333
No 390
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=23.43 E-value=1.2e+03 Score=26.98 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc-hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
..+-+|+..+.++++..|+---..|..+-..+.. ..+.+ +.+-..++..+-... .-.-..+-+++||.++..|.-
T Consensus 177 ~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir---k~iNNif~~FIyEte-~hnGIaELLEIlgSiIngfAl 252 (457)
T KOG2085|consen 177 KFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR---KSINNIFLRFIYETE-RHNGIAELLEILGSIINGFAL 252 (457)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH---Hhhcchhhhhccccc-ccCCHHHHHHHHHHhcCcccC
Confidence 5566777778788888888666666555543332 01111 111122222232221 122345678999999988877
Q ss_pred hhhhhH-HHHHHHHhhhh
Q 000941 163 LMSNDH-ERLLSALLPQL 179 (1215)
Q Consensus 163 ~l~~~~-~~ll~~ll~~l 179 (1215)
-+...| --+..++++.-
T Consensus 253 PlKEEhkiFL~rvLipLh 270 (457)
T KOG2085|consen 253 PLKEEHKLFLVRVLIPLH 270 (457)
T ss_pred cchhHHHHHHHHhhhccc
Confidence 665444 44555555543
No 391
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=23.01 E-value=1.1e+02 Score=30.56 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.4
Q ss_pred chhHhhHHHHHHHhhhhcCcccchHHHHHHhhccc
Q 000941 862 FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 896 (1215)
Q Consensus 862 ~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 896 (1215)
++.||+-|..+|..+....+..|||++++.++-++
T Consensus 84 d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~ 118 (169)
T cd00869 84 DQEVRAHAVQWLARLSNDELLDYLPQLVQALKFEL 118 (169)
T ss_pred ChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccc
Confidence 47899999999999988888899999999998764
No 392
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=22.99 E-value=1e+03 Score=26.72 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh--hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHH
Q 000941 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1215)
Q Consensus 205 ~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~--~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1215)
.++.+...++..+.... +..++-.++.++..-...+|..+..+|. ..++.+++.....++++.=++--|.-.|+-..
T Consensus 152 liq~v~~lL~~~l~~~~-d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 152 LIQTVSELLIASLRRNS-DPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHHHHHHHTTT----T---HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCC-chhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 35555555555555333 3567778899999888888877777764 36788887644333444445544444444444
Q ss_pred HhC
Q 000941 283 LRC 285 (1215)
Q Consensus 283 ~~~ 285 (1215)
+.+
T Consensus 231 ef~ 233 (312)
T PF04869_consen 231 EFS 233 (312)
T ss_dssp HT-
T ss_pred Hhc
Confidence 444
No 393
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=22.52 E-value=8.3e+02 Score=24.88 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHhccC--cccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 000941 52 VQQLDD--VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1215)
Q Consensus 52 l~~L~D--~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i 112 (1215)
+.+|+. +++.||..|+++|.. .+++.+..++++|++.+.-+.......+..-|+...
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~----~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~ 139 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLES----LSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRAL 139 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCT----S-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHheeccccccHHHHHHHHHHH
Confidence 444543 357899999988854 567788888888888886432233445555555443
No 394
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.16 E-value=1.1e+02 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHHhcCC--CchhHhhHHHHHHHhhhhcCcccchHHHHHHhhccc
Q 000941 854 IIESFQS--PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 896 (1215)
Q Consensus 854 ll~~l~~--~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 896 (1215)
.+.+|+. .++.||.-|..+|..+....+..|||++++.++-+.
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 3444432 358899999999999888888999999999998764
No 395
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.14 E-value=4.9e+02 Score=23.86 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000941 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 676 (1215)
Q Consensus 619 ~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 676 (1215)
..+..+..++... ..+...++..+...+++.....|...+-.+..++.+++..
T Consensus 19 ~~I~~lt~~a~~~-----~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~ 71 (114)
T cd03562 19 PSIQTLTKLAIEN-----RKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK 71 (114)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc
Confidence 4455566555321 3566788888888888888888999999999999998764
No 396
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.12 E-value=1.3e+02 Score=29.72 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHhcCC--CchhHhhHHHHHHHhhhhcCcccchHHHHHHhhccc
Q 000941 854 IIESFQS--PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQ 896 (1215)
Q Consensus 854 ll~~l~~--~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~ 896 (1215)
.+.+|+. .++.||.-|..+|.+.....+..|+|++++.++-++
T Consensus 74 aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 74 ALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 3444442 358999999999999888888899999999998765
No 397
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=22.07 E-value=4.1e+02 Score=34.74 Aligned_cols=124 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcc
Q 000941 1014 QDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCL 1093 (1215)
Q Consensus 1014 ~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~ 1093 (1215)
+|-+||..|+.-|..+.. +.+.++++++...|.-++..+..++|- ||..++
T Consensus 902 PDqeVR~~AVqwi~~ls~---DeL~d~LPQlVQALK~E~yl~S~Lv~F--------------------------LL~rsl 952 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLSN---DELLDYLPQLVQALKFELYLKSALVQF--------------------------LLSRSL 952 (1639)
T ss_pred CcHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHhccCHHHHH--------------------------HHHHHh
Q ss_pred cCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhChh----------hHHHhHHHhhHHHHhhhcccCCcchhhhh
Q 000941 1094 DQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPS----------AVLAVLDSLVDPLQKTINFKPKQDAVKQE 1162 (1215)
Q Consensus 1094 ~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~----------~~~~~l~~l~~~l~~~l~~k~k~~~~~qe 1162 (1215)
..+++...+-=.+-.++.| ..+++= -.+|..|...|.. .+++.|+.|.+.+|. +.+...|+
T Consensus 953 ~sl~~ah~lYWlLk~~l~d~qfs~rY--q~ll~aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~------as~s~Rq~ 1024 (1639)
T KOG0905|consen 953 VSLQFAHELYWLLKDALDDSQFSLRY--QNLLAALLDCCGKNLREEFKKQHKLVNELGSIAEDVRS------ASGSARQH 1024 (1639)
T ss_pred cchHHHHHHHHHHhhccccceeehHH--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchHHHH
Q ss_pred -hhhHHHHHHHHH
Q 000941 1163 -VDRNEDMIRSAL 1174 (1215)
Q Consensus 1163 -~e~~~e~~rs~l 1174 (1215)
+.+.-+...+-+
T Consensus 1025 vL~~~l~~v~~ff 1037 (1639)
T KOG0905|consen 1025 VLRTGLGRVDSFF 1037 (1639)
T ss_pred HHHHhHHHHHHHH
No 398
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=5.3e+02 Score=30.70 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCC
Q 000941 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 479 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~ 479 (1215)
.+++.+|.++..|.+-+.+.. + .-...+..-.+.++..+..+++.|-..|...+.|.
T Consensus 489 llqevl~elle~I~~kl~~~~-k---~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~ 545 (705)
T KOG2307|consen 489 LLQEVLPELLESIWGKLHDIT-K---VFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDV 545 (705)
T ss_pred HHHHHhHHHHHHHHhhccchh-h---hhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHH
Confidence 678889999999888776543 1 11334444445556667777777777777666543
No 399
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.68 E-value=2.2e+02 Score=28.95 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=39.5
Q ss_pred cchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHH--HHHHHHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 382 REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 382 ~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
.+...-..++.|+.++++... .+... -|..+..|...+.+++.++|..++.+|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~----------------G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKY----------------GLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHH----------------HHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHH----------------HHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 344566778888888876431 12221 3777888888888899999999999998775
No 400
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.43 E-value=6.4e+02 Score=23.11 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhh-HHHHHHhhc
Q 000941 183 QASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDT-VPVLIDYCT 261 (1215)
Q Consensus 183 ~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~i-ip~ll~~~~ 261 (1215)
.+.|..-+.-|+... ..-..++..+.+.+..... ..+..++-.+.+|++.++.+...++... .+.+.....
T Consensus 18 ~~~I~~lt~~a~~~~------~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~ 89 (114)
T cd03562 18 QPSIQTLTKLAIENR------KHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYE 89 (114)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 344444444444433 2234566666666665543 5667889999999999876544443333 444444444
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHh
Q 000941 262 SASENDEELREYSLQALESFLLR 284 (1215)
Q Consensus 262 ~~~~~d~elre~al~~l~~l~~~ 284 (1215)
..++++|+.....+..|-.+
T Consensus 90 ---~~~~~~r~kl~rl~~iW~~~ 109 (114)
T cd03562 90 ---KVDEKTRKKLERLLNIWEER 109 (114)
T ss_pred ---hCCHHHHHHHHHHHHHccCC
Confidence 35778887777766666443
No 401
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=21.39 E-value=6.2e+02 Score=25.47 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHhccC--cccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 000941 52 VQQLDD--VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1215)
Q Consensus 52 l~~L~D--~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i 112 (1215)
+.+|+. +++.||+.|+++|.. .+++.+..++++|.+.+.-+.......+..-|+..+
T Consensus 75 LeLL~~~f~d~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral 133 (171)
T cd00872 75 LELLDCNFPDEHVREFAVRCLEK----LSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRAL 133 (171)
T ss_pred HHHCCCcCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHh
Confidence 444442 357899999988865 456778888888888775433222334444444433
No 402
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.93 E-value=1.1e+03 Score=29.38 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHH
Q 000941 194 IASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPV 255 (1215)
Q Consensus 194 l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ 255 (1215)
+..++..++..+++.+++.+...+.+. .+.+.++.-+-.|+...|..+...-....|.
T Consensus 765 Ie~V~~~Lp~~y~erll~~l~~~l~~s----~HieF~l~W~~~il~~hG~~~~~~~~~~~~~ 822 (893)
T KOG0291|consen 765 IELVASSLPTAYLERLLKALSRFLENS----PHIEFYLRWLRAILTYHGSSLKRRAETLLPA 822 (893)
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHhhhhhhccceehhhH
Confidence 557778888889999999998877653 4567888888888888776555544444443
No 403
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=20.58 E-value=5.9e+02 Score=26.85 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcC------CCCcchhHHHHHHHHHHHhccCC
Q 000941 447 FSVLRELVVVLPDCLAD-HIGSLIPGIEKSLND------KSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 447 ~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d------~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
+.++..+....|-.++. .++.+++.+...... ......+-.....++..++..|.
T Consensus 9 l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr 70 (223)
T PF10441_consen 9 LEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHR 70 (223)
T ss_pred HHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhH
Confidence 33444444433333433 344455555444432 11223455566777777777765
No 404
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=20.28 E-value=1.3e+03 Score=26.13 Aligned_cols=260 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred chHHHHHHh-----hcccchhHHHHHHHHHHHhhcccc------chhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhh
Q 000941 884 FLPFILDQI-----DNQQKKQYLLLHSLKEVIVRQSVD------KAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLG 952 (1215)
Q Consensus 884 ~lp~il~~l-----~~~~~~~~~~l~alke~i~~~~~~------~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg 952 (1215)
+++.+++.+ .++...-..+...|..++...+.. +..-...++..=...+.+........+.+.+...|.
T Consensus 2 ~~~~l~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~ 81 (330)
T PF11707_consen 2 FLSELLQIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDLSFQSYGLELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLT 81 (330)
T ss_pred CHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q ss_pred hccccCCCcchHHHHHhhcCCCc------------------------chhHHHhhhhHhhhcCCCchhhhh---hhHhHH
Q 000941 953 KIALIEPAKLVPALKVRTTSSAA------------------------FTRATVVIAIKYSIVERPEKIDEI---IFPEIS 1005 (1215)
Q Consensus 953 ~l~~~~~~~~lp~l~~~l~~~~~------------------------~~R~~~i~~lk~~i~~~~~~~~~~---l~~~i~ 1005 (1215)
.++..+...+...+.....-..+ .+|...|.-+=.++..+....... .+..+.
T Consensus 82 ~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~ 161 (330)
T PF11707_consen 82 AIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMS 161 (330)
T ss_pred HHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHH
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhcCcccc-----cchhhh-hhHHHHHHhhcccccceeeeccCceeecccChhHHH
Q 000941 1006 SFLMLIKDQDRHVRRAAVLALSTFAHNKPNLI-----KGLLPE-LLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRK 1079 (1215)
Q Consensus 1006 ~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i-----~~~l~~-llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk 1079 (1215)
.+++.|.+++.++-...+.+|..-+-..+ .+ ...+++ .|..|..-..-..+ +++..+|+
T Consensus 162 ~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~~~~--------------~~~~~~~~ 226 (330)
T PF11707_consen 162 ALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSRDGE--------------DEKSSVAD 226 (330)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcccCC--------------cccchHHH
Q ss_pred HHHHHHHHHHhhcccCCCch----------------------hchHHHHhcccCC-cchhHhhHHHHHHHHHhhChhhHH
Q 000941 1080 AAFECVDTLLDSCLDQVNPS----------------------SFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVL 1136 (1215)
Q Consensus 1080 ~A~~~l~~ll~~~~~~~~~~----------------------~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~~~~ 1136 (1215)
.|.+.+..+.......+-.. .+-+.++..-|+- .+.........+.++...+|+.+.
T Consensus 227 ~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~PeLva 306 (330)
T PF11707_consen 227 LVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKILKACPELVA 306 (330)
T ss_pred HHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHHHHHChHHHH
Q ss_pred HhHHHhhHHHHhhhcccCCcchhh
Q 000941 1137 AVLDSLVDPLQKTINFKPKQDAVK 1160 (1215)
Q Consensus 1137 ~~l~~l~~~l~~~l~~k~k~~~~~ 1160 (1215)
+++..+...+. ...|+...|+.
T Consensus 307 ~Y~~~~~~~~~--~dPrlss~W~~ 328 (330)
T PF11707_consen 307 PYFNNLPYSLE--HDPRLSSTWIG 328 (330)
T ss_pred HHHHhhhhhCC--CCCCCCHHHHh
No 405
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=20.17 E-value=1.6e+03 Score=27.14 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=92.7
Q ss_pred HHHHHHHhccccC-CCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHH-----HHHHHHHhcCCCc
Q 000941 25 TSDLLNELNKESF-KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM-----TDKLCIKLLNGKD 98 (1215)
Q Consensus 25 l~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~l-----v~~L~~~~~~~~~ 98 (1215)
+.+..+++..+.. ++ ..+-......+++.+..+|+.-|-.|.|.+..+..... ...++ +..|.+.+.++..
T Consensus 62 te~nrn~i~ng~iL~l-~~sp~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~--fa~efi~~~gl~~L~~liedg~~ 138 (713)
T KOG2999|consen 62 TEKNRNEIKNGFILQL-CASPSHYAKRIMEILTEGNNISKMEALKELDSLSLDPT--FAEEFIRCSGLELLFSLIEDGRV 138 (713)
T ss_pred ehhhhhcccCCcEEEe-ecCchHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH--HHHHHHhcchHHHHHHHHHcCcc
Confidence 3445555554321 11 12234556677788889999999999999998875322 22222 3445555555543
Q ss_pred -chhhHHHHHHHHHHhccCc-----hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh--hHHH
Q 000941 99 -QHRDIASIALKTIIAEVTT-----SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN--DHER 170 (1215)
Q Consensus 99 -~~r~~a~~aL~~~i~~~~~-----~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~--~~~~ 170 (1215)
-.+++-+..|+.+++-+.. ..+...++..+..-+ ..+. .+..+-..|+.+|..+.-+-.. +.. ..+.
T Consensus 139 ~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V--~~~~--~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev 213 (713)
T KOG2999|consen 139 CMSSELLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYV--NAKR--EDANTLLAALQMLESLVLGSDT-LRQLVAEEV 213 (713)
T ss_pred chHHHHHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHH--hhhh--hcccchHHHHHHHHHHHhCChH-HHHHHHhcC
Confidence 3466777778777764332 111112222222211 1111 1345666777777665433221 110 1123
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 000941 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 171 ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
.++.++..++..+..+...|+..+..+...++++
T Consensus 214 ~i~~li~hlq~~n~~i~~~aial~nal~~~a~~~ 247 (713)
T KOG2999|consen 214 PIETLIRHLQVSNQRIQTCAIALLNALFRKAPDD 247 (713)
T ss_pred cHHHHHHHHHhcchHHHHHHHHHHHHHHhhCChH
Confidence 3556666676666667666888888777777766
No 406
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=20.14 E-value=1.2e+03 Score=25.97 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 42 ~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
.....++....-+..+|..+ =.-....|..|+...+++...+++..+|..+.+..+..+ ++.+|+
T Consensus 43 ~~l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~--~~l~L~------------ 107 (378)
T KOG2753|consen 43 EDLLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKT--ASLRLQ------------ 107 (378)
T ss_pred HHHHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCC--cccHHH------------
Confidence 34556777777777778777 344556677777777788888889988888865433322 223332
Q ss_pred HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000941 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL--MSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1215)
Q Consensus 122 ~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~--l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1215)
++-.|++++... ..+|...+.-+-+++.+.+-. +.+....+-+.+-..-- +..-++.=..++.....
T Consensus 108 ------vLsnLfn~~d~~---~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~--~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 108 ------VLSNLFNGVDKP---TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNI--SVEDQRELLRAVHKALK 176 (378)
T ss_pred ------HHHHHHhccCCC---chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 233455555443 226777766666666665432 22333443333322110 01111111222222111
Q ss_pred -hcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh
Q 000941 200 -SLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1215)
Q Consensus 200 -~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~ 241 (1215)
+-+-+.=.++|..++......+. +..|+.+..|+......-
T Consensus 177 ~~k~~~~s~kvmt~lLgtyt~dna-s~AredA~rcV~~av~dP 218 (378)
T KOG2753|consen 177 DNKSVDESSKVMTELLGTYTEDNA-SEAREDAMRCVVEAVKDP 218 (378)
T ss_pred hcchhhhHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHcCC
Confidence 11111234577777777766553 467788888887766643
Done!