Query 000941
Match_columns 1215
No_of_seqs 335 out of 1733
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 02:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 1E-124 4E-129 1266.3 100.1 1201 1-1215 1-1218(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 2.6E-46 8.8E-51 504.0 64.9 984 4-1091 48-1186(1230)
3 4fdd_A Transportin-1; heat rep 100.0 1.5E-38 5.2E-43 411.8 57.0 663 5-738 49-764 (852)
4 1qgr_A Protein (importin beta 100.0 2.5E-36 8.5E-41 394.5 67.5 656 5-737 2-743 (876)
5 4fdd_A Transportin-1; heat rep 100.0 2.5E-36 8.6E-41 391.0 62.6 710 4-776 13-763 (852)
6 2bpt_A Importin beta-1 subunit 100.0 1.1E-35 3.6E-40 387.8 68.4 660 1-738 1-733 (861)
7 2bpt_A Importin beta-1 subunit 100.0 5.9E-35 2E-39 380.7 63.0 704 8-776 43-834 (861)
8 1qgr_A Protein (importin beta 100.0 2.7E-33 9.3E-38 365.7 68.9 596 50-714 5-680 (876)
9 1b3u_A Protein (protein phosph 100.0 1E-30 3.4E-35 325.1 44.4 572 47-712 11-586 (588)
10 1b3u_A Protein (protein phosph 100.0 9.1E-30 3.1E-34 316.5 48.0 569 4-669 10-585 (588)
11 2x1g_F Cadmus; transport prote 99.9 1.2E-22 4.1E-27 266.7 56.6 670 14-714 50-859 (971)
12 2x19_B Importin-13; nuclear tr 99.9 4.1E-22 1.4E-26 261.8 54.6 669 14-714 68-847 (963)
13 1ibr_B P95, importin beta-1 su 99.9 7.2E-23 2.5E-27 245.9 36.2 411 5-477 2-461 (462)
14 1wa5_C Importin alpha RE-expor 99.9 1.1E-20 3.6E-25 246.8 50.5 644 15-738 48-771 (960)
15 3m1i_C Exportin-1; heat repeat 99.9 1.5E-18 5E-23 228.6 54.8 674 6-714 53-879 (1049)
16 1ibr_B P95, importin beta-1 su 99.9 3.3E-19 1.1E-23 214.0 36.6 437 49-569 4-461 (462)
17 3ibv_A Exportin-T; karyopherin 99.9 9.5E-18 3.2E-22 215.1 50.9 717 17-767 56-932 (980)
18 2x1g_F Cadmus; transport prote 99.8 3.9E-16 1.3E-20 204.8 60.9 675 6-761 9-816 (971)
19 1wa5_C Importin alpha RE-expor 99.8 5.6E-15 1.9E-19 192.8 58.4 596 50-713 9-710 (960)
20 2x19_B Importin-13; nuclear tr 99.8 3.7E-14 1.3E-18 186.2 65.2 671 4-761 24-804 (963)
21 4hat_C Exportin-1; heat repeat 99.8 1.3E-14 4.6E-19 185.9 54.4 672 7-714 54-879 (1023)
22 2vgl_B AP-2 complex subunit be 99.7 2.8E-15 9.6E-20 184.0 36.6 478 4-588 49-530 (591)
23 2jdq_A Importin alpha-1 subuni 99.7 4.4E-15 1.5E-19 177.2 32.8 403 80-539 13-442 (450)
24 2jdq_A Importin alpha-1 subuni 99.7 2.4E-15 8.3E-20 179.5 28.1 399 6-454 22-442 (450)
25 3now_A UNC-45 protein, SD10334 99.7 1.3E-12 4.4E-17 160.3 50.5 660 374-1092 53-784 (810)
26 2z6g_A B-catenin; FULL-length, 99.7 8.6E-14 2.9E-18 176.0 38.9 508 5-593 116-666 (780)
27 2vgl_B AP-2 complex subunit be 99.7 1.6E-13 5.6E-18 168.3 38.7 437 172-711 88-530 (591)
28 3now_A UNC-45 protein, SD10334 99.7 3.1E-12 1.1E-16 156.9 48.8 654 14-740 18-762 (810)
29 1wa5_B Importin alpha subunit; 99.6 3.3E-14 1.1E-18 173.1 30.3 403 5-455 88-510 (530)
30 4b8j_A Importin subunit alpha- 99.6 4.2E-14 1.4E-18 172.3 30.2 403 5-455 75-496 (528)
31 1wa5_B Importin alpha subunit; 99.6 4.6E-14 1.6E-18 171.9 30.3 399 85-540 88-510 (530)
32 3gjx_A Exportin-1; transport, 99.6 3.1E-11 1E-15 153.7 53.4 666 15-714 72-905 (1073)
33 1w63_A Adapter-related protein 99.6 1E-11 3.6E-16 152.7 46.5 453 171-712 108-576 (618)
34 2z6h_A Catenin beta-1, beta-ca 99.6 1.8E-12 6.1E-17 161.4 40.0 473 45-592 13-529 (644)
35 4b8j_A Importin subunit alpha- 99.6 1.7E-12 5.8E-17 158.0 36.2 399 86-540 76-496 (528)
36 2z6g_A B-catenin; FULL-length, 99.6 1.6E-12 5.6E-17 164.3 35.8 510 86-674 117-666 (780)
37 1w63_A Adapter-related protein 99.6 9.1E-12 3.1E-16 153.2 41.4 476 7-588 73-575 (618)
38 3m1i_C Exportin-1; heat repeat 99.6 1.5E-10 5.2E-15 152.3 55.1 530 4-610 16-640 (1049)
39 3ibv_A Exportin-T; karyopherin 99.6 1.1E-09 3.7E-14 140.6 60.7 630 1-714 3-769 (980)
40 3a6p_A Exportin-5; exportin-5, 99.6 1.4E-11 4.7E-16 162.6 44.0 496 14-544 57-701 (1204)
41 2qk2_A LP04448P; mini spindles 99.5 1.7E-13 6E-18 147.7 17.8 194 339-561 25-220 (242)
42 4hat_C Exportin-1; heat repeat 99.5 4.3E-09 1.5E-13 135.1 58.2 574 4-652 16-698 (1023)
43 2qk2_A LP04448P; mini spindles 99.5 2.3E-13 7.8E-18 146.8 15.4 190 8-209 19-215 (242)
44 2z6h_A Catenin beta-1, beta-ca 99.5 3.6E-11 1.2E-15 149.7 35.2 476 127-673 14-529 (644)
45 1jdh_A Beta-catenin; beta-cate 99.4 6.2E-11 2.1E-15 144.4 35.4 471 43-588 14-528 (529)
46 3ul1_B Importin subunit alpha- 99.4 4.4E-11 1.5E-15 143.9 31.0 399 4-454 57-477 (510)
47 1jdh_A Beta-catenin; beta-cate 99.4 9.1E-11 3.1E-15 142.9 33.9 467 5-538 18-528 (529)
48 2vgl_A Adaptor protein complex 99.4 4.7E-10 1.6E-14 137.3 40.0 483 7-588 77-587 (621)
49 3tpo_A Importin subunit alpha- 99.4 7.4E-11 2.5E-15 142.9 32.6 399 4-453 76-495 (529)
50 2qk1_A Protein STU2; STU2P, XM 99.3 2.1E-11 7.1E-16 130.8 16.9 197 340-560 27-234 (249)
51 3ul1_B Importin subunit alpha- 99.3 8.6E-10 2.9E-14 132.7 32.3 397 87-539 60-477 (510)
52 2qk1_A Protein STU2; STU2P, XM 99.3 2.1E-11 7.3E-16 130.7 16.1 202 8-212 20-233 (249)
53 2vgl_A Adaptor protein complex 99.3 8.8E-09 3E-13 126.0 41.0 459 169-712 110-588 (621)
54 3tpo_A Importin subunit alpha- 99.3 1.9E-09 6.7E-14 130.4 33.5 399 86-539 78-496 (529)
55 3gjx_A Exportin-1; transport, 99.1 3.8E-06 1.3E-10 107.2 53.1 524 142-773 74-716 (1073)
56 4ady_A RPN2, 26S proteasome re 99.1 1.2E-05 4.1E-10 98.9 54.7 324 649-1050 365-695 (963)
57 1oyz_A Hypothetical protein YI 99.1 5.9E-09 2E-13 114.9 21.2 252 47-394 24-277 (280)
58 2iw3_A Elongation factor 3A; a 99.1 5.2E-09 1.8E-13 130.2 22.5 303 5-358 15-324 (986)
59 2iw3_A Elongation factor 3A; a 99.0 1.2E-07 4E-12 118.2 33.2 291 98-456 28-325 (986)
60 4ady_A RPN2, 26S proteasome re 99.0 2.3E-05 7.7E-10 96.5 50.6 295 811-1154 392-701 (963)
61 4hxt_A De novo protein OR329; 99.0 8.5E-09 2.9E-13 111.6 18.7 236 47-291 3-249 (252)
62 4hxt_A De novo protein OR329; 99.0 4.3E-09 1.5E-13 113.9 16.4 238 5-248 3-250 (252)
63 1oyz_A Hypothetical protein YI 99.0 1.2E-08 4.2E-13 112.4 19.0 238 5-305 24-262 (280)
64 4db8_A Armadillo-repeat protei 98.9 1.1E-08 3.9E-13 110.6 15.6 225 48-282 14-250 (252)
65 4db8_A Armadillo-repeat protei 98.9 7.1E-09 2.4E-13 112.3 13.6 230 4-239 12-251 (252)
66 3a6p_A Exportin-5; exportin-5, 98.9 1.6E-05 5.5E-10 105.0 45.7 532 4-617 11-686 (1204)
67 3l6x_A Catenin delta-1; cateni 98.9 5.1E-06 1.7E-10 98.7 36.5 355 47-455 49-476 (584)
68 2db0_A 253AA long hypothetical 98.9 1.2E-06 4.1E-11 83.0 24.4 201 342-590 45-246 (253)
69 1xm9_A Plakophilin 1; armadill 98.8 1.2E-06 4.1E-11 103.4 29.9 349 48-455 4-449 (457)
70 1xm9_A Plakophilin 1; armadill 98.8 7.6E-07 2.6E-11 105.1 26.8 355 5-398 3-448 (457)
71 3l6x_A Catenin delta-1; cateni 98.8 2.1E-06 7.3E-11 101.9 29.3 362 4-400 48-477 (584)
72 3opb_A SWI5-dependent HO expre 98.8 0.00044 1.5E-08 83.4 48.9 512 145-739 148-708 (778)
73 3opb_A SWI5-dependent HO expre 98.8 7.3E-05 2.5E-09 90.2 42.1 478 524-1031 183-728 (778)
74 3ltj_A Alpharep-4; protein eng 98.7 1.1E-07 3.7E-12 98.8 15.0 185 44-281 12-196 (201)
75 3ltm_A Alpha-REP4; protein eng 98.7 7.8E-08 2.7E-12 100.8 14.0 188 4-242 19-206 (211)
76 3ltm_A Alpha-REP4; protein eng 98.7 1.8E-07 6.1E-12 98.0 16.8 187 811-1034 19-206 (211)
77 3ltj_A Alpharep-4; protein eng 98.7 1.5E-07 5.3E-12 97.7 15.1 183 4-237 14-196 (201)
78 4ffb_C Protein STU2; tubulin f 98.6 1.7E-07 5.8E-12 102.7 13.9 190 339-544 19-216 (278)
79 2db0_A 253AA long hypothetical 98.6 3.1E-06 1.1E-10 80.2 19.9 218 167-455 29-246 (253)
80 3nmz_A APC variant protein; pr 98.6 3.4E-05 1.2E-09 89.5 31.8 354 5-400 33-451 (458)
81 4db6_A Armadillo repeat protei 98.6 3.1E-07 1E-11 96.1 13.3 189 7-199 15-209 (210)
82 2of3_A ZYG-9; multifunctional 98.5 1.7E-06 6E-11 91.1 17.6 180 9-207 51-244 (266)
83 4gmo_A Putative uncharacterize 98.5 0.00031 1E-08 87.0 40.7 75 5-80 35-110 (684)
84 3nmz_A APC variant protein; pr 98.5 8.6E-06 2.9E-10 94.5 24.7 304 17-363 95-455 (458)
85 1xqr_A HSPBP1 protein; armadil 98.4 9.5E-06 3.2E-10 88.6 20.9 194 44-242 26-241 (296)
86 4db6_A Armadillo repeat protei 98.4 2.2E-06 7.6E-11 89.5 14.4 189 44-239 10-209 (210)
87 4ffb_C Protein STU2; tubulin f 98.4 2.8E-06 9.5E-11 93.0 15.3 187 9-204 14-217 (278)
88 1xqr_A HSPBP1 protein; armadil 98.3 4.1E-05 1.4E-09 83.6 22.8 220 226-497 56-286 (296)
89 2of3_A ZYG-9; multifunctional 98.3 3.2E-05 1.1E-09 81.5 20.0 178 342-544 59-240 (266)
90 3nmw_A APC variant protein; AR 98.1 9.6E-05 3.3E-09 83.0 19.8 235 47-289 74-340 (354)
91 3nmw_A APC variant protein; AR 98.0 0.00039 1.3E-08 78.0 22.9 229 183-459 97-338 (354)
92 3b2a_A TON_1937, putative unch 98.0 0.0016 5.4E-08 65.2 23.1 189 423-633 30-222 (265)
93 3b2a_A TON_1937, putative unch 98.0 0.002 7E-08 64.5 23.9 199 252-513 34-233 (265)
94 1vsy_5 Proteasome activator BL 97.9 0.011 3.6E-07 75.2 34.0 587 80-713 129-873 (997)
95 1vsy_5 Proteasome activator BL 97.8 0.00064 2.2E-08 86.2 21.1 389 43-501 505-969 (997)
96 3tjz_B Coatomer subunit gamma; 97.8 0.00029 1E-08 78.0 15.8 302 342-708 41-348 (355)
97 3grl_A General vesicular trans 97.8 0.0048 1.6E-07 72.5 26.5 224 343-590 136-394 (651)
98 3u0r_A Apoptosis inhibitor 5; 97.7 0.011 3.8E-07 66.1 26.3 310 17-364 41-364 (507)
99 3tjz_B Coatomer subunit gamma; 97.5 0.00019 6.5E-09 79.5 9.4 225 7-256 107-333 (355)
100 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00056 1.9E-08 76.8 12.7 242 427-709 175-432 (800)
101 4gmo_A Putative uncharacterize 97.5 0.24 8.1E-06 61.0 37.2 159 126-287 34-218 (684)
102 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00038 1.3E-08 78.1 10.3 241 7-279 177-432 (800)
103 3grl_A General vesicular trans 97.3 0.04 1.4E-06 64.8 25.9 313 172-539 23-393 (651)
104 1te4_A Conserved protein MTH18 97.3 7.1E-05 2.4E-09 71.1 1.9 120 45-196 11-130 (131)
105 1te4_A Conserved protein MTH18 97.2 9.1E-05 3.1E-09 70.3 1.4 116 850-986 13-129 (131)
106 3l9t_A Putative uncharacterize 97.0 0.0081 2.8E-07 61.0 13.2 149 848-1043 70-219 (240)
107 1w9c_A CRM1 protein, exportin 96.6 0.027 9.1E-07 60.5 14.4 184 385-580 44-236 (321)
108 3tt9_A Plakophilin-2; cell adh 96.4 0.14 4.8E-06 53.0 18.7 188 48-239 10-229 (233)
109 3tt9_A Plakophilin-2; cell adh 96.4 0.017 6E-07 59.9 11.5 191 4-198 8-228 (233)
110 3l9t_A Putative uncharacterize 96.3 0.01 3.6E-07 60.2 9.0 164 810-986 70-236 (240)
111 3u0r_A Apoptosis inhibitor 5; 96.1 0.77 2.6E-05 51.6 22.9 265 4-286 65-361 (507)
112 1vsy_4 Proteasome activator BL 96.1 0.55 1.9E-05 58.0 24.2 264 37-304 326-666 (799)
113 1vsy_4 Proteasome activator BL 96.0 4.8 0.00016 49.7 37.6 320 168-542 337-689 (799)
114 4atg_A TAF6; transcription, TF 95.4 2.4 8.3E-05 41.9 21.7 112 526-652 61-178 (196)
115 4atg_A TAF6; transcription, TF 94.8 0.3 1E-05 48.4 12.8 132 164-304 9-140 (196)
116 3o2t_A Symplekin; heat repeat, 94.5 4.5 0.00015 44.8 22.6 107 344-457 78-185 (386)
117 1lrv_A LRV, leucine-rich repea 93.8 0.0051 1.7E-07 64.4 -2.6 39 13-69 59-97 (244)
118 1lrv_A LRV, leucine-rich repea 93.0 0.027 9.3E-07 58.9 1.5 156 13-235 83-242 (244)
119 3fga_B Serine/threonine-protei 93.0 13 0.00046 41.2 25.3 303 19-366 34-374 (403)
120 3gs3_A Symplekin, LD45768P; he 92.8 11 0.00036 39.4 22.6 149 5-160 16-175 (257)
121 2npp_B PP2A, B subunit, serine 91.9 20 0.00068 40.5 23.2 303 18-365 66-406 (449)
122 3gs3_A Symplekin, LD45768P; he 91.4 15 0.00051 38.2 24.3 108 343-457 67-175 (257)
123 1lsh_A Lipovitellin (LV-1N, LV 89.4 22 0.00075 45.8 23.3 172 170-400 391-577 (1056)
124 3o2t_A Symplekin; heat repeat, 87.4 39 0.0013 37.3 28.1 274 6-304 27-320 (386)
125 1w9c_A CRM1 protein, exportin 86.9 16 0.00055 39.1 16.3 164 344-525 44-229 (321)
126 3fga_B Serine/threonine-protei 85.3 50 0.0017 36.6 26.5 92 490-592 272-368 (403)
127 3dad_A FH1/FH2 domain-containi 83.7 6.4 0.00022 42.3 11.3 155 4-161 118-289 (339)
128 3tj1_A RNA polymerase I-specif 82.6 85 0.0029 37.1 21.2 145 149-302 114-261 (649)
129 2jak_A Serine/threonine-protei 80.8 73 0.0025 35.1 22.6 251 19-278 79-362 (392)
130 2npp_B PP2A, B subunit, serine 79.2 90 0.0031 35.2 20.3 90 489-589 304-398 (449)
131 1lsh_A Lipovitellin (LV-1N, LV 77.3 18 0.00061 46.6 14.7 171 84-285 391-578 (1056)
132 1ho8_A Vacuolar ATP synthase s 73.3 1.3E+02 0.0044 34.1 23.0 261 9-285 172-478 (480)
133 1upk_A MO25 protein; transfera 64.7 1.5E+02 0.0053 31.7 19.4 184 47-239 79-283 (341)
134 2jak_A Serine/threonine-protei 63.3 1.8E+02 0.0062 32.0 17.7 47 489-535 316-362 (392)
135 2b6c_A Hypothetical protein EF 63.0 12 0.0004 38.2 6.7 90 946-1041 109-198 (220)
136 3dad_A FH1/FH2 domain-containi 61.4 1.8E+02 0.006 31.3 15.4 101 142-242 173-289 (339)
137 1juq_A ADP-ribosylation factor 55.0 69 0.0024 30.9 10.2 125 951-1091 3-129 (171)
138 3jxy_A Alkylpurine DNA glycosy 54.5 14 0.00049 37.9 5.7 89 949-1043 119-207 (232)
139 3ldz_A STAM-1, signal transduc 54.5 35 0.0012 31.7 7.8 61 142-202 55-117 (140)
140 1upk_A MO25 protein; transfera 52.2 2.5E+02 0.0085 30.1 24.1 99 344-455 179-283 (341)
141 1ho8_A Vacuolar ATP synthase s 51.6 3.1E+02 0.011 31.0 29.2 126 131-258 81-218 (480)
142 1x5b_A Signal transducing adap 51.4 84 0.0029 29.9 10.1 72 426-498 52-125 (163)
143 3tj1_A RNA polymerase I-specif 51.2 43 0.0015 39.6 9.4 91 188-287 116-207 (649)
144 3g2s_A C-terminal fragment of 50.5 92 0.0031 29.2 10.0 75 212-288 52-131 (149)
145 1mhq_A ADP-ribosylation factor 49.7 1E+02 0.0034 28.9 10.1 76 210-287 40-120 (148)
146 1mhq_A ADP-ribosylation factor 47.7 1.2E+02 0.0041 28.3 10.3 62 142-203 51-120 (148)
147 1x5b_A Signal transducing adap 47.5 73 0.0025 30.4 9.0 62 142-203 65-129 (163)
148 1vdy_A Hypothetical protein (R 46.5 60 0.0021 30.0 7.8 79 1000-1091 47-131 (140)
149 3ldz_A STAM-1, signal transduc 44.3 1.2E+02 0.004 28.1 9.6 71 426-498 42-114 (140)
150 1juq_A ADP-ribosylation factor 43.6 2.3E+02 0.0077 27.2 14.0 62 142-203 63-132 (171)
151 4flb_A Regulation of nuclear P 43.1 1.9E+02 0.0065 26.2 10.9 102 169-283 7-112 (132)
152 1sz9_A PCF11 protein; RNA poly 40.5 1.4E+02 0.0049 27.7 9.5 89 619-713 25-114 (144)
153 1dvp_A HRS, hepatocyte growth 37.2 1.4E+02 0.0049 29.9 9.9 74 210-287 44-119 (220)
154 2fv2_A RCD1 required for cell 36.4 1.3E+02 0.0045 30.8 9.0 40 266-305 114-155 (268)
155 1elk_A Target of MYB1; superhe 36.2 1E+02 0.0035 29.1 8.0 77 209-286 54-133 (157)
156 3zyq_A Hepatocyte growth facto 34.5 1.9E+02 0.0064 29.2 10.2 73 212-288 49-123 (226)
157 3eg5_B Protein diaphanous homo 34.3 3E+02 0.01 30.4 12.7 59 384-458 134-194 (383)
158 3g2s_A C-terminal fragment of 34.2 2.9E+02 0.0099 25.7 14.4 62 142-203 61-130 (149)
159 3ebb_A Phospholipase A2-activa 32.5 4E+02 0.014 28.2 12.8 151 428-589 105-262 (304)
160 3jxy_A Alkylpurine DNA glycosy 30.6 4.3E+02 0.015 26.6 12.9 65 1072-1141 142-207 (232)
161 3d9j_A RNA-binding protein 16; 29.1 2E+02 0.0067 26.7 8.6 93 188-283 23-119 (145)
162 1vdy_A Hypothetical protein (R 28.9 1.2E+02 0.0041 28.0 6.7 71 8-81 14-84 (140)
163 1dvp_A HRS, hepatocyte growth 28.6 2E+02 0.0069 28.8 9.3 73 426-499 42-116 (220)
164 3zyq_A Hepatocyte growth facto 28.5 2.1E+02 0.0071 28.9 9.3 73 426-499 45-119 (226)
165 3rru_A TOM1L1 protein; structu 27.5 2.8E+02 0.0097 25.9 9.3 75 426-500 53-132 (152)
166 4fu3_A Regulation of nuclear P 27.1 1.2E+02 0.0041 27.7 6.7 102 172-283 9-113 (135)
167 2jpq_A UPF0352 protein VP2129; 25.5 67 0.0023 26.0 3.7 41 73-114 3-43 (83)
168 1sz9_A PCF11 protein; RNA poly 24.9 4.1E+02 0.014 24.5 12.0 113 181-304 22-135 (144)
169 2juw_A UPF0352 protein SO_2176 24.7 69 0.0024 25.8 3.6 40 74-114 4-43 (80)
170 3qml_C Protein SLS1, nucleotid 23.1 2.9E+02 0.01 29.1 9.1 95 572-671 81-189 (315)
171 3s4w_B Protein FACD2, fanconi 21.7 8.4E+02 0.029 31.6 14.7 146 151-302 381-526 (1323)
172 3rru_A TOM1L1 protein; structu 20.4 3E+02 0.01 25.7 8.0 78 209-287 54-134 (152)
173 2f31_A Diaphanous protein homo 20.3 2.6E+02 0.009 28.2 8.3 59 384-458 68-128 (233)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.3e-124 Score=1266.34 Aligned_cols=1201 Identities=44% Similarity=0.733 Sum_probs=1042.6
Q ss_pred Cch--HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC
Q 000941 1 MAN--LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1215)
Q Consensus 1 ~~~--~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~ 78 (1215)
|++ +.+..+|+++.|+|+|+|+||++||.+.++++.++.++...+++++.+++.|.|++++||+.|+++|+.++..++
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 676 999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCch----hhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 79 EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 79 ~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~----~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
++++..+++.|+..+.++++.+|..++.+|+.++..++.. .....+++.++|.|+.++.+. +++.++..++++|+
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 9899999999999998888889999999999999887652 134567899999999999852 26899999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l 234 (1215)
++++.+|..+.++.+.+++.+++.+.++++.||++|+.+++.++...++..+..+++.+++.+.+..+ ...|+.+++++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888889999999877643 25677899999
Q ss_pred HHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCC
Q 000941 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM 314 (1215)
Q Consensus 235 ~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~ 314 (1215)
+.+++..|..|.||++.++|.+++.++ ++++++|+.++++++.|+..+++++.||++.+++.+++.++|||++..++
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~ 315 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCN---VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 315 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHS---SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcc
Confidence 999999999999999999999999997 57889999999999999999999999999999999999999999874221
Q ss_pred CCCc-ccccc--cccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHH
Q 000941 315 EEDS-DDEAY--EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVF 391 (1215)
Q Consensus 315 d~d~-~~~~~--~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~ 391 (1215)
|+++ ++.++ +++++++.+++|++++|.+|+||++|+.+++.++...|+.+.++++.++|.++.+++|++++||..++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 1111 00111 11122222346777788999999999999999999889888999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcCCC----CCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhh
Q 000941 392 NTFIELVRQTGNVTKGQIDN----NELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467 (1215)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~----~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~ 467 (1215)
.++..+++..+....|..+. ...++...+..++|.+++.+.+.++++++++|++++.+++.++...++.+.+|++.
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ 475 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH
T ss_pred HHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH
Confidence 99999998875421111100 00134456778899999999999999999999999999999999988888899999
Q ss_pred hhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCc
Q 000941 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE 547 (1215)
Q Consensus 468 lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 547 (1215)
++|.+...+.|+.....++.+++..+..+++.++++.+.||++.++|.+...++|+.++++.+|+++++.+++.+++...
T Consensus 476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998764457899999999999998888889999999999999999999999999999999999998876221
Q ss_pred CCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHH
Q 000941 548 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVI 627 (1215)
Q Consensus 548 ~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i 627 (1215)
.....+.||++.+++.++..+...|.+.++|++|+.++|.++.+.|+.+.++++.+++.|.+.+.++.+|..++++++.+
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i 635 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLI 635 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 12347899999999999999976788899999999999999999999888999999999999999999999999999999
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHH
Q 000941 628 AASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707 (1215)
Q Consensus 628 ~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~ 707 (1215)
+.+..+.++.+|++.+++.|...++++++.+|.+++.|++.++...+..+..+.+..++..+.++++++|.+....++.+
T Consensus 636 ~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~ 715 (1230)
T 1u6g_C 636 AGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 715 (1230)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHH
T ss_pred HhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 97766678899999999999999999999999999999999999998877777788888888888889999999999999
Q ss_pred HHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcC--CChHHHHHHHhccCCCCCCCcch
Q 000941 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN--TSFDTLLDSLLSSAKPSPQSGGV 785 (1215)
Q Consensus 708 l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~--~~~~~l~~~ll~~~~~~~~~~~~ 785 (1215)
++.+++. .|.....+...++|.++.+++++.+++.++.++..+++.++..+. ..+.++++.+++.....+.. ..
T Consensus 716 L~~l~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~-~~ 791 (1230)
T 1u6g_C 716 LTTLAKV---YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTA-LT 791 (1230)
T ss_dssp HHHHTTS---CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----C
T ss_pred HHHHHHh---CchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCc-cc
Confidence 9999984 555555578899999999999988889888999999999987653 47889999998765432111 13
Q ss_pred hhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCC--chhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCch
Q 000941 786 AKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDS--STNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFE 863 (1215)
Q Consensus 786 ~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e 863 (1215)
+++++..+++|+|.++...++. ...+++.|...++++. +..+.+++.++|++|++.++...+++.+.+++.|.++++
T Consensus 792 ~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~ 870 (1230)
T 1u6g_C 792 HKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 870 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCH
T ss_pred cchhhHHHHHHHHHHHHhcchh-hHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhCCCCH
Confidence 4677888999999998876653 3467777777776432 234788999999999988777667889999999999999
Q ss_pred hHhhHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccch
Q 000941 864 EIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGV 943 (1215)
Q Consensus 864 ~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~ 943 (1215)
+||.+|+.|||.++.++++.|+|.+++.+.++++.|+.+++||+|++.+.+ .+.+.|+.++||+.|++.+++.++++
T Consensus 871 ~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~---~~~~~~~~~~i~~~L~~~~~~~~~~~ 947 (1230)
T 1u6g_C 871 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS---VVGLKPYVENIWALLLKHCECAEEGT 947 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSC---STTTHHHHHHHHHHHTTCCCCSSTTH
T ss_pred HHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCC---hhhHHhhHHHHHHHHHHHhcCcchhh
Confidence 999999999999999999999999999998888889999999999998653 45688999999999999998888999
Q ss_pred hhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHH
Q 000941 944 RNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAV 1023 (1215)
Q Consensus 944 r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~ 1023 (1215)
|+.+++|+|+++..+|+.++|.|.+.+.+.++.+|.++++++++++.+.+..+++++.++++.|+++|+|+|.+||++|+
T Consensus 948 r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~ 1027 (1230)
T 1u6g_C 948 RNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVAL 1027 (1230)
T ss_dssp HHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHH
T ss_pred HHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchH
Q 000941 1024 LALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIV 1103 (1215)
Q Consensus 1024 ~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~ 1103 (1215)
++|++++|++|+++.++++.++|.||+++.+++++||+|+||||||++|||+++||+||+|||+++++|.+++++.+|+
T Consensus 1028 ~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~- 1106 (1230)
T 1u6g_C 1028 VTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL- 1106 (1230)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH-
T ss_pred HHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCcchhHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccCCcchhhhhhhhHHHHHHHHHHHHHHhhcc
Q 000941 1104 PYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQI 1183 (1215)
Q Consensus 1104 ~~~~~gl~D~~di~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~k~~~~~qe~e~~~e~~rs~l~~~~~l~~~ 1183 (1215)
++|+.||+||+|||++||.||.||+..+|..+++++|+++++|+++|++|+|++|||||+||++|++||++||+.+|+++
T Consensus 1107 ~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~ 1186 (1230)
T 1u6g_C 1107 NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTI 1186 (1230)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHcccCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHhcCcchHHHHHHHhcC
Q 000941 1184 SGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 1215 (1215)
Q Consensus 1184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1215)
|+++++|+|++|++++++||+|+.+|++|++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1230)
T 1u6g_C 1187 PEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218 (1230)
T ss_dssp CSCSSSSSCCCCCHHHHHHHHHTC--------
T ss_pred CCcccChHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.6e-46 Score=504.00 Aligned_cols=984 Identities=16% Similarity=0.215 Sum_probs=714.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChh---
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP--- 80 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~--- 80 (1215)
..+..+++.+.+.++.+|.+|..-|.+.... ..+.....+++.++..+.|+++.||+.|.++++.++..+++.
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~----~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSK----VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4577788889999999999999988776653 344677889999999999999999999999999999888765
Q ss_pred ------hHHHHHHHHHHHhcC-CCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHH
Q 000941 81 ------RVVEMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1215)
Q Consensus 81 ------~~~~lv~~L~~~~~~-~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L 153 (1215)
+|..+++.|+..+.+ ++...|..+..+|..+++..+. .+ .++.+.+++.++..+.+. ++.||..++.++
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l-~~~~~~ll~~l~~~L~~~--~~~vR~~a~~al 199 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG-LL-VNFHPSILTCLLPQLTSP--RLAVRKRTIIAL 199 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-SC-TTTHHHHHHHHGGGGGCS--SHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh-HH-HHHHHHHHHHHHHHHcCC--cHHHHHHHHHHH
Confidence 699999999999974 6667888999999999876654 12 235678888898888875 578999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCCChHHHHH
Q 000941 154 CDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRT 229 (1215)
Q Consensus 154 ~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~~~~~~~~~ 229 (1215)
+.++...+..+ .+.+++.+++.+.+.. ..+|+.++.+++.++...++. ++..+++.+++.+.+.+. ++|+.
T Consensus 200 ~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~--~vR~~ 274 (1230)
T 1u6g_C 200 GHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD--ELREY 274 (1230)
T ss_dssp HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCT--TTHHH
T ss_pred HHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCH--HHHHH
Confidence 99988877654 2334444554444332 468899999999999888764 357899999999876543 78999
Q ss_pred HHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc--------------------CCC--------------cHHHHHHHH
Q 000941 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--------------------SEN--------------DEELREYSL 275 (1215)
Q Consensus 230 ~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~--------------------~~~--------------d~elre~al 275 (1215)
++++++.+++.+|..|.||++.++|.+++.+..+ +++ ..++|..+.
T Consensus 275 a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHH
Confidence 9999999999999999999999999998877421 000 024799999
Q ss_pred HHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHH
Q 000941 276 QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1215)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~ 355 (1215)
.++..++...|+.+.+|++.+++.+...++ |+ .+.||.++..++..
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d~---------------------------------~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFK-ER---------------------------------EENVKADVFHAYLS 400 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-CS---------------------------------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHcC-CC---------------------------------chHHHHHHHHHHHH
Confidence 999999998887788999999988766552 11 13799999999998
Q ss_pred HHhhCc-------------------hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh
Q 000941 356 LIVSRP-------------------EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1215)
Q Consensus 356 li~~~~-------------------~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1215)
++...+ ..+..+.+.++|.+.+.+++.++.+|..++.+++.++.....
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~------------- 467 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG------------- 467 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-------------
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh-------------
Confidence 886532 234556777778877779999999999999999999876321
Q ss_pred hhHHHHHHHHHHHHHHHHhcccCh--hhHHHHHHHHHHHHHhCchh-hhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHH
Q 000941 417 RWLLKQEVSKIVKSINRQLREKSI--KTKVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFT 493 (1215)
Q Consensus 417 ~~~L~~~~p~i~~~l~~~L~~~~~--~~r~~~~~~l~~L~~~~~~~-l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l 493 (1215)
.+.++++.+++.+.+.+.++++ .+|..++..+..++...++. +.+|++.++|.+...++|++ ..++.+++..+
T Consensus 468 --~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~--~~v~~~al~~l 543 (1230)
T 1u6g_C 468 --ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF--YKITSEALLVT 543 (1230)
T ss_dssp --TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS--HHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc--hHHHHHHHHHH
Confidence 2345678889999999988865 78889999999998876554 88899999999999998865 57788888899
Q ss_pred HHHhccCCC------CcchhhhhhhHHHHHHHh--cCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHH
Q 000941 494 RLVLSSHSP------PVFHPYIKALSSPVLAAV--GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 565 (1215)
Q Consensus 494 ~~l~~~~~~------~~~~~~l~~l~p~l~~~l--~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~ 565 (1215)
+.+++..++ ..+.||++.++|.++..+ .|..+.++..|+.+++.++...++ .+.++++.+++.+.
T Consensus 544 ~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-------~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-------NLGSDLPNTLQIFL 616 (1230)
T ss_dssp HHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-------GCCTHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-------hhhhhHHHHHHHHH
Confidence 988865443 478899999999999999 677889999999999999988754 47789999999988
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHhccC-cccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcC-CCCCchhHHHH
Q 000941 566 SRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAAS-PLHIDLTCVLE 641 (1215)
Q Consensus 566 ~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~-~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s-~~~~~~~~~l~ 641 (1215)
+.+.+. ..|..++.++|.++...+. .+.++++.++|.+...++++ ..|.+++.+++.++.. +...+ .+.+.
T Consensus 617 ~~l~~e----~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~-~~~v~ 691 (1230)
T 1u6g_C 617 ERLKNE----ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT-AAMID 691 (1230)
T ss_dssp HHTTSS----SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC-HHHHH
T ss_pred HHhccc----hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC-HHHHH
Confidence 888643 3688899999988764432 55678899999999888644 5889999999999843 21111 34555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCC--hhhHHHHHHHHHHHhhcccCCC
Q 000941 642 HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD--LHMTALALELCCTLMADKRSSP 719 (1215)
Q Consensus 642 ~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d--~~~~~~al~~l~~l~~~~~~~p 719 (1215)
.++..+.+.+.+.|...+..++.+|..++...+..+. +..+.+++.+..++.++- .......+..+..+... .+
T Consensus 692 ~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~---~~ 767 (1230)
T 1u6g_C 692 AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS-KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVT---GT 767 (1230)
T ss_dssp HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG-GTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTT---CC
T ss_pred HHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH-HhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhc---CC
Confidence 5555555556677888899999999999876654332 233445565555554432 11223344444555442 11
Q ss_pred chhhhhhhhhHHHHHHHhhhcc---cchhhhHHHHHHHHHHHhhcCCChH------------------------------
Q 000941 720 NVGLAVRNKVLPQALALIKSSL---LQGQALVALQSFFAALVYSANTSFD------------------------------ 766 (1215)
Q Consensus 720 ~~~~~~~~~~l~~l~~ll~s~~---l~~~~l~~l~~~~~~l~~~~~~~~~------------------------------ 766 (1215)
. ......+++.+++.+..+. .+......+..+++.+....++...
T Consensus 768 ~--~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 845 (1230)
T 1u6g_C 768 N--NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEV 845 (1230)
T ss_dssp T--TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHh
Confidence 0 0122333333332211100 0111223333444443332222111
Q ss_pred ----------HHHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCCchhhHHHHHHHh
Q 000941 767 ----------TLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSHLALLCLG 836 (1215)
Q Consensus 767 ----------~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~lal~~lg 836 (1215)
++.+.++...... . +......+.++|.++.. .....++.++..+.+. ...++.++.+|+
T Consensus 846 g~~~~~~~~~~l~~~~~~~l~~~--~----~~Vr~aAa~aLg~l~~~----~~~~~lp~ll~~l~~~-~~~~~~~l~al~ 914 (1230)
T 1u6g_C 846 GHHIDLSGQLELKSVILEAFSSP--S----EEVKSAASYALGSISVG----NLPEYLPFVLQEITSQ-PKRQYLLLHSLK 914 (1230)
T ss_dssp HHHSCCCSCTHHHHHHHHGGGCS--C----HHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHSC-GGGHHHHHHHHH
T ss_pred cccCCCcccccHHHHHHHHhCCC--C----HHHHHHHHHHhHHHhcc----CHHHHHHHHHHHHhcc-chhhHHHHHHHH
Confidence 2222222222111 1 22223345556655432 1223444455555433 334888999999
Q ss_pred hhhccCCCCCc----cchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHHHhhcc-cchhHHHHHHHHHHHh
Q 000941 837 EIGRRKDLSSH----EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIV 911 (1215)
Q Consensus 837 ei~~~~~~~~~----~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~-~~~~~~~l~alke~i~ 911 (1215)
++..+.+.... +.+++.+++.+++.++++|..++.|||.++..++..++|.+.+.+.++ +..|...+.++++++.
T Consensus 915 e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 915 EIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC
T ss_pred HHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 98876544333 467787888888888999999999999999988899999999988765 3458888899998887
Q ss_pred hccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCC-------cchHHHHHhhcCCCcchhHHHhhh
Q 000941 912 RQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAAFTRATVVIA 984 (1215)
Q Consensus 912 ~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~-------~~lp~l~~~l~~~~~~~R~~~i~~ 984 (1215)
.++ ....++++.+++.+++.+++++.++|++++.+||.+++..|. .++|.|++.+..++..+|.+-+|+
T Consensus 995 ~~~----~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp 1070 (1230)
T 1u6g_C 995 DHP----QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP 1070 (1230)
T ss_dssp SSC----CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETT
T ss_pred cCc----hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCC
Confidence 653 334577888888888888888889999999999999998876 456777777777777777777888
Q ss_pred hHhhhcCCCc----hh---hhh---------hhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHH
Q 000941 985 IKYSIVERPE----KI---DEI---------IFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLL 1048 (1215)
Q Consensus 985 lk~~i~~~~~----~~---~~~---------l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l 1048 (1215)
+||.++++.+ ++ ..+ +.++++.++.+|.| +.++|..+..+|..+++.+|..+.++++.+...+
T Consensus 1071 ~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 1149 (1230)
T 1u6g_C 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPL 1149 (1230)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8877766633 11 111 44566777788999 4899999999999999999999999999999988
Q ss_pred HHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000941 1049 YDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1049 ~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~ 1091 (1215)
.+.+..| ++=...|+..+...|+.|.|+.|+..|...
T Consensus 1150 ~~~l~~~------~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~ 1186 (1230)
T 1u6g_C 1150 RATCTTK------VKANSVKQEFEKQDELKRSAMRAVAALLTI 1186 (1230)
T ss_dssp HHHHHCC------CCTTSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHhhc------cccchhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 8765432 223356677888899999999999888644
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-38 Score=411.83 Aligned_cols=663 Identities=13% Similarity=0.143 Sum_probs=536.1
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
.+..++..+.+.|+.+|++|+.-|++.+.+.|.+++++....+.+.++++|.|+++.||+.++.+++.++..-.+..|+.
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ 128 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD 128 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHH
Confidence 45667777788999999999999999999988889999999999999999999999999999999999998877789999
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH----HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHh
Q 000941 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA----QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1215)
Q Consensus 85 lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~----~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~ 160 (1215)
+++.|++.+.+++...|+.+..+|..+++..+. ... ....+.++|.+++++++. +..||..|+.+|+.++...
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~-~~~~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE-ILDSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT-HHHHCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH-HhchhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc
Confidence 999999999888888999999999999998775 111 123677899999998865 6899999999999888766
Q ss_pred hhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000941 161 GNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 161 g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1215)
+..+.+..+.+++.++..+.++++.+|+.|+.+|+.++...++. ++..+++.+++.+++.+ +.+|..+++++.++
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~--~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD--ENVALEACEFWLTL 283 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHH
Confidence 66666677889999999999999999999999999999887665 36778888888887654 47899999999999
Q ss_pred Hhh--hhhhhccchhhhHHHHHHhhc----------cc--CCC-------cHHHHHHHHHHHHHHHHhChhhhcccHHHH
Q 000941 238 SRA--VGYRFGPHLGDTVPVLIDYCT----------SA--SEN-------DEELREYSLQALESFLLRCPRDISSYCDEI 296 (1215)
Q Consensus 238 ~~~--~~~~~~~~l~~iip~ll~~~~----------~~--~~~-------d~elre~al~~l~~l~~~~~~~~~~~l~~i 296 (1215)
++. +...+.||++.++|.++..+. .+ +|+ +..+|..+..++..++...|+. .++.+
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~~l 360 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLPHI 360 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHHHH
Confidence 874 334578999999999998872 11 111 1137999999999999888743 45667
Q ss_pred HHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHH
Q 000941 297 LHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLI 376 (1215)
Q Consensus 297 i~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li 376 (1215)
++.+.+.+. +.+|++|.+|+.+++.+....++.+.+++..++|.++
T Consensus 361 ~~~l~~~l~----------------------------------~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 361 LPLLKELLF----------------------------------HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp HHHHHHHHT----------------------------------CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHhc----------------------------------CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 777776663 1249999999999999998888777778899999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHh
Q 000941 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 377 ~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~ 456 (1215)
..++|+++.||..++.+++.+....+.. ....+++.+++.+.+.+.+.++.+|..++.++..+++.
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--------------~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQ--------------PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHS--------------CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888754310 11345677888888888888899999999999999998
Q ss_pred CchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcc-hhhhhhhHHHHHH---HhcCCchHHHHHHH
Q 000941 457 LPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF-HPYIKALSSPVLA---AVGERYYKVTAEAL 532 (1215)
Q Consensus 457 ~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~l~~l~p~l~~---~l~d~~~~v~~~al 532 (1215)
.+..+.+|++.+++.+...+++.. ......++.+++.++...++... .+|++.++|.+.. .+.|....++ .++
T Consensus 473 ~~~~l~~~l~~ll~~L~~~l~~~~--~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~ 549 (852)
T 4fdd_A 473 ACTELVPYLAYILDTLVFAFSKYQ--HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLL 549 (852)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHH
T ss_pred hhHhhHhHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHH
Confidence 888889999999999999987543 22233345566666544333222 3489999999985 4445555553 678
Q ss_pred HHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc---------------CCCHHHHHHHHHHHHHHHHhccCccc
Q 000941 533 RVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ---------------DQDQEVKECAISCMGLVISTFGDNLG 597 (1215)
Q Consensus 533 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~---------------d~~~~Vr~~Ai~~lg~l~~~~~~~l~ 597 (1215)
.+++.++..++. .+.||++.+++.++..+... ..+.+++..++.++|.++..+|..+.
T Consensus 550 ~~l~~i~~~~g~-------~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 550 ECLSSVATALQS-------GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp HHHHHHHHHHGG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 899999888754 68999999999888776531 12577899999999999999998888
Q ss_pred chh--hhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000941 598 AEL--PACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAY 673 (1215)
Q Consensus 598 ~~~--~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 673 (1215)
+++ +.+++.+...+++ ...|..+..+++.++.. .+..+.+|++.++|.+...+...+..+|.+++.+++.++.+.
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA-CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 887 7899999998876 45899999999999844 245789999999999999997778889999999999999988
Q ss_pred CCCCCcchHHHHHHHhhhhcCCCCh--hhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhh
Q 000941 674 GDKIGASAYEVIIVELSTLISDSDL--HMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIK 738 (1215)
Q Consensus 674 ~~~~~~~~~~~~l~~l~~~l~~~d~--~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~ 738 (1215)
+..+. +++..+++.+.+.+++++. .++..+..++|++... .|+....+.+++++.+++.+.
T Consensus 702 ~~~~~-p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~---~~~~~~~~l~~~~~~~~~~l~ 764 (852)
T 4fdd_A 702 GIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV---CPQEVAPMLQQFIRPWCTSLR 764 (852)
T ss_dssp GGGGG-GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH---CHHHHGGGHHHHHHHHHHHHH
T ss_pred hHhHH-HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh---CHHHhCccHHHHHHHHHHHhc
Confidence 77665 4678899999998876643 5788899999999985 555445567788888888775
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.5e-36 Score=394.49 Aligned_cols=656 Identities=12% Similarity=0.092 Sum_probs=508.5
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHhh-------
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV--AGDVSGLAVKCLAPLVK------- 75 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~--~~~Vq~~A~~~l~~l~~------- 75 (1215)
.|..+|+.+.++|+++|..|...|.+. .. .....+...++..+.++ +..||..|..+|...+.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~-~~-------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERA-AV-------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHH-Hh-------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 467889999999999999999998553 21 22457888888888774 57899999999988653
Q ss_pred --------ccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHH
Q 000941 76 --------KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1215)
Q Consensus 76 --------~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~ 147 (1215)
.+.++....+-..|+..+.++++.. ..++.++..+...... ...+..++|.+++.+.+.+.++.+|.
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~~w~~ll~~l~~~l~~~~~~~~~r~ 148 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTNPNSTEHMKE 148 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHhCCCCCHHHHH
Confidence 2344444555666888887766667 7788888877653211 12356788888888876411478999
Q ss_pred HHHHHHHHHHHHh-hhhhhhhHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH----H-HHHHHHHHHHhhc
Q 000941 148 ECLDILCDVLHKF-GNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL----L-AKATIEVVRNLRS 219 (1215)
Q Consensus 148 ~al~~L~~l~~~~-g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~----~-~~l~~~ll~~l~~ 219 (1215)
.++.+++.+++.+ +..+.++.+.+++.+...+.++ +..+|..|+.+++.++.+.+... + +.+++.+.+.+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 228 (876)
T 1qgr_A 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (876)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 9999999999886 4556678899999999999887 57899999999999887765442 1 2356666666654
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhccchh-hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh------------
Q 000941 220 KGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCP------------ 286 (1215)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~------------ 286 (1215)
.+ .++|..++++++.++...+..+.||+. .+++.++..+. ++++++|..+++++..++...+
T Consensus 229 ~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 229 PD--TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK---SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp SS--HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 43 478899999999999999999999999 99999998876 5778999999999988876421
Q ss_pred ---------hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHH
Q 000941 287 ---------RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1215)
Q Consensus 287 ---------~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li 357 (1215)
...+++++.+++.+++.+.... + |++|.+|++|++|+.+++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~-----~----------------------d~~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQD-----E----------------------NDDDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC-----S----------------------SCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhccc-----c----------------------cccccccHHHHHHHHHHHHHH
Confidence 1234567888888888875210 0 012235999999999999999
Q ss_pred hhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~ 437 (1215)
...++ .++..++|.+...+++.++.+|..++.+++.+....+ | ..+..+++.+++.+.+.+++
T Consensus 357 ~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-------------P-SQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp HHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-------------H-HHHHHHHHHHHHHHHHHhCC
Confidence 88774 3466788888888899999999999999888764221 2 24567889999999999999
Q ss_pred cChhhHHHHHHHHHHHHHhCchhh--hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC-------------C
Q 000941 438 KSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS-------------P 502 (1215)
Q Consensus 438 ~~~~~r~~~~~~l~~L~~~~~~~l--~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~-------------~ 502 (1215)
+++.+|..++.+++.++...+..+ .++++.+++.+...+.+. +.++..++.+++.++...+ .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999877653 579999999999999873 6788889998888876532 3
Q ss_pred CcchhhhhhhHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc---------
Q 000941 503 PVFHPYIKALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN--------- 570 (1215)
Q Consensus 503 ~~~~~~l~~l~p~l~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~--------- 570 (1215)
+.+.||++.++|.+...+.+. ...++..++.+++.++...+ .++.+|+..+++.+++.+..
T Consensus 497 ~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~-------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 569 (876)
T 1qgr_A 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA-------KDCYPAVQKTTLVIMERLQQVLQMESHIQ 569 (876)
T ss_dssp CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC-------STTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 458899999999999999754 35788889999999998764 35788999999999988864
Q ss_pred cCCC----HHHHHHHHHHHHHHHHhcc-CcccchhhhhHHHHHHhhccc----hhHHHHHHHHHHHHcCCCCCchhHHHH
Q 000941 571 QDQD----QEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE----ITRLTAVKAFAVIAASPLHIDLTCVLE 641 (1215)
Q Consensus 571 ~d~~----~~Vr~~Ai~~lg~l~~~~~-~~l~~~~~~~l~~L~~~L~~e----~~r~~a~~al~~i~~s~~~~~~~~~l~ 641 (1215)
++.| .++|+.++.+++.++...| ..+.++++.++|.++..++++ .++..++.+++.++.. .+.++.+|++
T Consensus 570 ~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~ 648 (876)
T 1qgr_A 570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV-LGGEFLKYME 648 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH-HGGGGGGGHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 2333 5688999999999999999 788899999999999988765 4688899999999854 2456889999
Q ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCC--CChhhHHHHHHHHHHHhhcccCC
Q 000941 642 HVIAELTAFLRKA-NRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD--SDLHMTALALELCCTLMADKRSS 718 (1215)
Q Consensus 642 ~~l~~L~~~L~~~-~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~d~~~~~~al~~l~~l~~~~~~~ 718 (1215)
.+++.+...+... +..+|..++.+++.++...+..+. ++++.+++.+...+++ .+..++..++.+++.++...
T Consensus 649 ~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~--- 724 (876)
T 1qgr_A 649 AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI--- 724 (876)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh---
Confidence 9999999999987 889999999999999998876554 3567888888888866 46678999999999998742
Q ss_pred CchhhhhhhhhHHHHHHHh
Q 000941 719 PNVGLAVRNKVLPQALALI 737 (1215)
Q Consensus 719 p~~~~~~~~~~l~~l~~ll 737 (1215)
+.....+.+.++|.+.+.+
T Consensus 725 g~~~~~~l~~~~~~l~~~~ 743 (876)
T 1qgr_A 725 GGEFKKYLEVVLNTLQQAS 743 (876)
T ss_dssp GGGGGGGHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 2223334555555555444
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.5e-36 Score=391.04 Aligned_cols=710 Identities=13% Similarity=0.130 Sum_probs=544.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhc----cCh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKK----VSE 79 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~----~~~ 79 (1215)
..|..+|+...|+|++.|.-|...|.+. .. .++. ...+-.++..+.+.+..||..|.-.+...+.+ +++
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~-~~-----~p~~-~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQL-NQ-----YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHH-TT-----SHHH-HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHH-Hh-----CCCH-HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 4677788888999999999999998643 21 2222 23344444555678899999999888887753 555
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1215)
+.-..+-..|+..+.++++.+|..++.++..+...-+. ..+..++|.|++.+.+. ++.++..++.+|+.+++.
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-----~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-----QNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICED 158 (852)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-----TTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-----cccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Confidence 56667777888888777778899999999988764322 23567888999888775 578999999999999999
Q ss_pred hhhhhhh-----hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHH
Q 000941 160 FGNLMSN-----DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNI 231 (1215)
Q Consensus 160 ~g~~l~~-----~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~i 231 (1215)
.+..+.. ....+++.++..++++++.||..|+.+++.+....++.. +..+++.+++.+.+++ .++|+.++
T Consensus 159 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~--~~vr~~a~ 236 (852)
T 4fdd_A 159 SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE--PEVRKNVC 236 (852)
T ss_dssp HTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC--HHHHHHHH
T ss_pred hHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHH
Confidence 9887543 368899999999999999999999999998887766653 5678888888776654 47999999
Q ss_pred HHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh--ChhhhcccHHHHHHHHHHHhccCCC
Q 000941 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR--CPRDISSYCDEILHLTLEYLSYDPN 309 (1215)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~--~~~~~~~~l~~ii~~~l~~l~~dpn 309 (1215)
++++.+++..|..+.||++.+++.++..++ +.++++|..+++++..+++. +.+.+.||++.+++.+++.+.|.+.
T Consensus 237 ~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 237 RALVMLLEVRMDRLLPHMHNIVEYMLQRTQ---DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 999999999999999999999999999887 56889999999888887753 3455789999999999999875310
Q ss_pred CCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHH
Q 000941 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMD 389 (1215)
Q Consensus 310 ~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~ 389 (1215)
| ...- ++|.++|+++||+..+|.||++|+.+++.+....|+ ..+..++|.+.+.+++.++.+|..
T Consensus 314 -------d-~~~~----~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~a 378 (852)
T 4fdd_A 314 -------D-IILL----KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKES 378 (852)
T ss_dssp -------H-HHHH----HC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred -------H-HHHh----cCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0 0000 000000111122226799999999999999988774 355567888888888889999999
Q ss_pred HHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch-hhhhhhhhh
Q 000941 390 VFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD-CLADHIGSL 468 (1215)
Q Consensus 390 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~-~l~~~~~~l 468 (1215)
++.+++.+.... ...+..+++.+++.+.+.++++++.+|..++.+++.++...++ ....++..+
T Consensus 379 a~~alg~i~~~~---------------~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 379 GILVLGAIAEGC---------------MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp HHHHHHHTTTTT---------------HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred HHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999887543 1245567899999999999999999999999999999986544 245689999
Q ss_pred hHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcC
Q 000941 469 IPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEG 548 (1215)
Q Consensus 469 v~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~ 548 (1215)
++.+...+.|.+ +.++..++..++.+++..++ .+.||++.+++.+...+++...+....++.+++.++...++.
T Consensus 444 l~~L~~~L~d~~--~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~--- 517 (852)
T 4fdd_A 444 MTELLKRILDSN--KRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH--- 517 (852)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh---
Confidence 999999998764 78999999999999887654 578999999999999998665666666777788887776542
Q ss_pred CCCCChhcHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhc---------------
Q 000941 549 LGFDFKPYVQPIYNAIMSRLTN-QDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG--------------- 612 (1215)
Q Consensus 549 ~~~~~~~~l~~l~~~l~~~l~~-~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~--------------- 612 (1215)
..-.+|++.++|.+++.... .+.+.+++ .++.|++.++...|..+.++++.+++.+++.++
T Consensus 518 --~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~ 594 (852)
T 4fdd_A 518 --LNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 594 (852)
T ss_dssp --GCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred --hccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 12256899999998865432 24456665 799999999999999888888888886665543
Q ss_pred ----cchhHHHHHHHHHHHHcCCCCCchhHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Q 000941 613 ----NEITRLTAVKAFAVIAASPLHIDLTCVL--EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVII 686 (1215)
Q Consensus 613 ----~e~~r~~a~~al~~i~~s~~~~~~~~~l--~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l 686 (1215)
+...+..++.+++.++.. .+..+.+|+ +.+++.+...+.+.+..+|..++.+++.++..++..+. +++..++
T Consensus 595 ~~~~d~~~~~~~l~~l~~l~~~-l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~l~~~l 672 (852)
T 4fdd_A 595 YEAPDKDFMIVALDLLSGLAEG-LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVK-PCIADFM 672 (852)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHH-HGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTG-GGHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHH-HhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 123577888999988843 245678887 67899888888877788999999999999998887665 4678899
Q ss_pred HHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhc----C
Q 000941 687 VELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSA----N 762 (1215)
Q Consensus 687 ~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~----~ 762 (1215)
+.+...+..++..++..+..++|.++.. .+.....+...+++.++++++++.......+.....++.++... .
T Consensus 673 p~l~~~l~~~~~~v~~~a~~alg~i~~~---~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~ 749 (852)
T 4fdd_A 673 PILGTNLNPEFISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA 749 (852)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHHH---HGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHH---hhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC
Confidence 9888888888889999999999999875 22335667889999999999877555555566667777777654 2
Q ss_pred CChHHHHHHHhccC
Q 000941 763 TSFDTLLDSLLSSA 776 (1215)
Q Consensus 763 ~~~~~l~~~ll~~~ 776 (1215)
+.+..+++.++..+
T Consensus 750 ~~l~~~~~~~~~~l 763 (852)
T 4fdd_A 750 PMLQQFIRPWCTSL 763 (852)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 44566666665544
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.1e-35 Score=387.78 Aligned_cols=660 Identities=12% Similarity=0.138 Sum_probs=526.1
Q ss_pred CchHHHHHHHHHh-cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC--cccchhHHHHHHHHHHhh--
Q 000941 1 MANLQMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD--VAGDVSGLAVKCLAPLVK-- 75 (1215)
Q Consensus 1 ~~~~~l~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D--~~~~Vq~~A~~~l~~l~~-- 75 (1215)
|-...+..+|+.+ .|+|++.|.+|...|.+. .+. ....+...++..+.+ .+..||..|...+...+.
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~-~~~-------~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKL-SND-------NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH-HHH-------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHH-Hhh-------CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc
Confidence 6667899999999 999999999999999663 321 124567777777765 467899999999998763
Q ss_pred -------------c-cChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc-cCchhhHHHHHHhHhHHHHhhhhccC
Q 000941 76 -------------K-VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKD 140 (1215)
Q Consensus 76 -------------~-~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~ 140 (1215)
. ++++....+-..|+..+.++++.+|..++.+|..+... .|. ..+..++|.|++.+.+.+
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~-----~~w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH-----GAWPELMKIMVDNTGAEQ 147 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-----TCCHHHHHHHHHHTSTTS
T ss_pred ChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc-----cccHHHHHHHHHHHhcCC
Confidence 2 66666677788888888888888899999999888753 221 125678889988887652
Q ss_pred CChhHHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH-----HHHHH
Q 000941 141 MNTEIRCECLDILCDVLHKFGNL---MSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL-----LAKAT 210 (1215)
Q Consensus 141 ~~~~v~~~al~~L~~l~~~~g~~---l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~ 210 (1215)
++.++..++.+++.+++.++.. +.++.+.+++.+...+.++ ++.||..|+.+++.+..+++... .+.++
T Consensus 148 -~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 -PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp -CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5789999999999999988765 5678899999999999987 67999999999999876654432 24466
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh-hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh-----
Q 000941 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLR----- 284 (1215)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~----- 284 (1215)
+.+.+.+.+++ .+.|+.++++++.++...|..|.+|+. .+++.++..+. +.++++|..+++++..++..
T Consensus 227 ~~l~~~~~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 227 QVVCEATQAED--IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK---SPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHTCSC--HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666665544 478999999999999999999999999 99999988887 57889999999999988775
Q ss_pred ------------ChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHH
Q 000941 285 ------------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1215)
Q Consensus 285 ------------~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~ 352 (1215)
++..+.++++.+++.++..+++.. + |++|..|.+|++|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~-----~----------------------d~~d~~~~~r~~a~~~ 354 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN-----E----------------------DPEDDDWNVSMSAGAC 354 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC-----C----------------------C-CCCCCHHHHHHHHH
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc-----c----------------------ccccccCcHHHHHHHH
Confidence 333456788899999988885210 0 0012248999999999
Q ss_pred HHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHH
Q 000941 353 LAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1215)
Q Consensus 353 L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~ 432 (1215)
++.+....++ ..+..++|.+.+.+++.++.+|..++.+++.+++..+ + ..+.++++.+++.+.
T Consensus 355 L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 355 LQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-------------K-VQRTYYVHQALPSIL 417 (861)
T ss_dssp HHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccH---hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC-------------H-HHHHHHHHHHHHHHH
Confidence 9999987764 3455677777777888899999999999888864221 1 256778899999999
Q ss_pred HHhcccChhhHHHHHHHHHHHHHhCchhh--hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC---CCcchh
Q 000941 433 RQLREKSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS---PPVFHP 507 (1215)
Q Consensus 433 ~~L~~~~~~~r~~~~~~l~~L~~~~~~~l--~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~---~~~~~~ 507 (1215)
+.++++++.+|..++.+++.++...+..+ .++++.++|.+...+++. +.++..++..+..+++..+ +..+.|
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 99999999999999999999998776544 468999999999999763 6788888888888887654 367889
Q ss_pred hhhhhHHHHHHHhcC--CchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc-------------C
Q 000941 508 YIKALSSPVLAAVGE--RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-------------D 572 (1215)
Q Consensus 508 ~l~~l~p~l~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-------------d 572 (1215)
|++.+++.+...+.+ ....++..++.+++.++...+. .+.+|+..+++.+++.+... +
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD-------TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-------GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch-------hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 999999999999974 4468999999999999987643 57889999999998888632 1
Q ss_pred CCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc---hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHH
Q 000941 573 QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA 649 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~ 649 (1215)
...++|..++.+++.++...|..+.++++.+++.+...+++. ..|..++.+++.++.. .+.++.+|++.+++.|..
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~-~~~~~~~~l~~i~~~l~~ 646 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS-LGKGFEKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 235688999999999999999888899999999999887553 5688899999988843 245678999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCC--ChhhHHHHHHHHHHHhhcccCCCchhhhhhh
Q 000941 650 FLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS--DLHMTALALELCCTLMADKRSSPNVGLAVRN 727 (1215)
Q Consensus 650 ~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~ 727 (1215)
.+...+..+|..++.+++.++...+..+. +++..+++.+...+.++ |..++..++.+++.++.. .+.....|.+
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~---~~~~~~~~l~ 722 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSLEEDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN---IGADFIPYLN 722 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGGGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH---HGGGGHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHhchhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH---hhhhHHHHHH
Confidence 99877888999999999999998876443 45677787777777655 488999999999999985 2344556778
Q ss_pred hhHHHHHHHhh
Q 000941 728 KVLPQALALIK 738 (1215)
Q Consensus 728 ~~l~~l~~ll~ 738 (1215)
.++|.+++.+.
T Consensus 723 ~~l~~l~~~~~ 733 (861)
T 2bpt_A 723 DIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88888888775
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5.9e-35 Score=380.72 Aligned_cols=704 Identities=13% Similarity=0.191 Sum_probs=533.0
Q ss_pred HHHHHhcC--CCcchhhhhHHHHHHHhcccc-----------CC-CChHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Q 000941 8 AILEKITG--KDKDFRYMATSDLLNELNKES-----------FK-ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPL 73 (1215)
Q Consensus 8 ~ll~~~~~--~d~d~R~mAl~dL~~~l~~~~-----------~~-~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l 73 (1215)
.+++-+.+ .++.+|++|+.-|++.+.+.| .. ++++....+.+.++..|.++++.||+.+..+++.+
T Consensus 43 ~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i 122 (861)
T 2bpt_A 43 LSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122 (861)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 44444544 578899999999999886542 33 78888888999999999999999999999999999
Q ss_pred hhcc-ChhhHHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhccCchhh--HHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 74 VKKV-SEPRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSL--AQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 74 ~~~~-~~~~~~~lv~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~--~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
+... +...|+.+++.|+..+.++ ++..|..+..+|+.+++..+. .. ..+....++|.+..++.+.+++..||..+
T Consensus 123 ~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a 201 (861)
T 2bpt_A 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP-QSQALVSSSNNILIAIVQGAQSTETSKAVRLAA 201 (861)
T ss_dssp HHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST-TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred HHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh-hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 8764 4358999999999999887 778899999999999987653 21 23456778888888888753358899999
Q ss_pred HHHHHHHHHHhhhhhh--hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCC
Q 000941 150 LDILCDVLHKFGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAK 223 (1215)
Q Consensus 150 l~~L~~l~~~~g~~l~--~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~ll~~l~~~~~~ 223 (1215)
+.+++.++..++..+. ...+.+++.+...+.++++.+|+.++.+++.++...++. ++. .+++.++..+.+.+
T Consensus 202 l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~-- 279 (861)
T 2bpt_A 202 LNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN-- 279 (861)
T ss_dssp HHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSS--
T ss_pred HHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 9999998776655443 134567888888888888999999999999999776543 355 67777777776543
Q ss_pred hHHHHHHHHHHHHHHhhhh-----------------hhhccchhhhHHHHHHhhcccC----CCcHHHHHHHHHHHHHHH
Q 000941 224 PEMIRTNIQMVGALSRAVG-----------------YRFGPHLGDTVPVLIDYCTSAS----ENDEELREYSLQALESFL 282 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~-----------------~~~~~~l~~iip~ll~~~~~~~----~~d~elre~al~~l~~l~ 282 (1215)
.++|..++++++.+++... ..+.+++..++|.++..+...+ +++..+|..+..++..++
T Consensus 280 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~ 359 (861)
T 2bpt_A 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence 4789999999999988642 1245677889999998886432 122369999999999999
Q ss_pred HhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc-
Q 000941 283 LRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP- 361 (1215)
Q Consensus 283 ~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~- 361 (1215)
..+++ ..++.+++.+.+.+. +.+|++|++|+.+++.+.....
T Consensus 360 ~~~~~---~~~~~l~~~l~~~l~----------------------------------~~~~~~r~~a~~~l~~i~~~~~~ 402 (861)
T 2bpt_A 360 QNCGN---HILEPVLEFVEQNIT----------------------------------ADNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HHHGG---GGHHHHHHHHHHHTT----------------------------------CSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHccH---hHHHHHHHHHHHHcC----------------------------------CCChhHHHHHHHHHHHHHcCCCH
Confidence 88774 345667777766653 1249999999999999997764
Q ss_pred hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChh
Q 000941 362 EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK 441 (1215)
Q Consensus 362 ~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~ 441 (1215)
+.+.+++..++|.++..++|+++.||..++.+++.+....+.. ..+ ..+++.+++.+.+.+.+. ++
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------~~~----~~~~~~~l~~l~~~l~~~-~~ 468 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES---------IDP----QQHLPGVVQACLIGLQDH-PK 468 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG---------SCT----TTTHHHHHHHHHHHHTSC-HH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh---------cCC----HHHHHHHHHHHHHHhccC-hH
Confidence 7777888999999999999999999999999999998765410 000 234566677777777775 78
Q ss_pred hHHHHHHHHHHHHHhCc----hhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHH
Q 000941 442 TKVGAFSVLRELVVVLP----DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVL 517 (1215)
Q Consensus 442 ~r~~~~~~l~~L~~~~~----~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~ 517 (1215)
+|..++.++..++...+ ..+.+|++.+++.+...+.+......+|..++.+++.++...+ ..+.+|++.++|.++
T Consensus 469 v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~ 547 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT-DTVAETSASISTFVM 547 (861)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHH
Confidence 99999999999998754 5678999999999999998654346789999999999998865 457789999999998
Q ss_pred HHhcC---------------CchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHH
Q 000941 518 AAVGE---------------RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAI 582 (1215)
Q Consensus 518 ~~l~d---------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai 582 (1215)
..+.+ ....++..++.+++.+++.+++ .+.||++.+++.++..+...+.+ .+|+.++
T Consensus 548 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~ 619 (861)
T 2bpt_A 548 DKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-------SVEPVADMLMGLFFRLLEKKDSA-FIEDDVF 619 (861)
T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-------GTGGGHHHHHHHHHHHHHSTTGG-GTHHHHH
T ss_pred HHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHccCCCC-cHHHHHH
Confidence 88763 2446778899999999988753 58899999999999998754322 8999999
Q ss_pred HHHHHHHHhccCcccchhhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhh--hHH
Q 000941 583 SCMGLVISTFGDNLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKAN--RAL 658 (1215)
Q Consensus 583 ~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~--~~l 658 (1215)
.++|.++...|..+.++++.++|.+.+.+++ ..+|..++.+++.++.. .+..+.+|++.+++.+...+.+++ +.+
T Consensus 620 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~v 698 (861)
T 2bpt_A 620 YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS-LEEDFRRYSDAMMNVLAQMISNPNARREL 698 (861)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH-TGGGGHHHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hchhccchHHHHHHHHHHHhCCccccHhh
Confidence 9999999999998989999999999998854 35788999999998854 245688999999999999998765 889
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCC-----------hhhHHHHHHHHHHHhhcccCCCchhhhhhh
Q 000941 659 RQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD-----------LHMTALALELCCTLMADKRSSPNVGLAVRN 727 (1215)
Q Consensus 659 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d-----------~~~~~~al~~l~~l~~~~~~~p~~~~~~~~ 727 (1215)
|..++.+++.++...+..+. ++++.+++.+.+.+..+. ..++..++++++.++......|.....+.+
T Consensus 699 r~~~~~~l~~l~~~~~~~~~-~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~ 777 (861)
T 2bpt_A 699 KPAVLSVFGDIASNIGADFI-PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred hHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999887654 456777777766665321 346788999999988752100122233344
Q ss_pred hhHHHHHHHhhhcc-c-chhhhHHHHHHHHHHHhhc-CCC----hH-HHHHHHhccC
Q 000941 728 KVLPQALALIKSSL-L-QGQALVALQSFFAALVYSA-NTS----FD-TLLDSLLSSA 776 (1215)
Q Consensus 728 ~~l~~l~~ll~s~~-l-~~~~l~~l~~~~~~l~~~~-~~~----~~-~l~~~ll~~~ 776 (1215)
.+++.+...+.++. - +.....+...+++.++... ++. ++ .+++.+++..
T Consensus 778 ~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l 834 (861)
T 2bpt_A 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRT 834 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHH
Confidence 44444444443210 0 1122244556666666544 333 44 5566666433
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.7e-33 Score=365.72 Aligned_cols=596 Identities=10% Similarity=0.097 Sum_probs=455.4
Q ss_pred HHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhccCc----------
Q 000941 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTT---------- 117 (1215)
Q Consensus 50 ~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~---------- 117 (1215)
.++..+.+|++++|++|...|..+.. ...+.+...|+..+.++ +...|..|+..||+.+.....
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~----~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAV----ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh----cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 45666778999999999999987643 34566777777777653 467899999999998743211
Q ss_pred hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCC--hHHHHHHHHHHHH
Q 000941 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIA 195 (1215)
Q Consensus 118 ~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~ 195 (1215)
..+.......+-+.+++.+.+. ++.+ ..++.+++.++...+. ..+++.+++.++..+.++ ++.+|+.++.+++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~--~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~ 155 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGTE--TYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTC--CSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCC--cHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 0111223344455677777764 3566 8899999999887543 246788999999999988 8899999999999
Q ss_pred HHHhhcCHH----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHH
Q 000941 196 SLASSLSDD----LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEE 269 (1215)
Q Consensus 196 ~l~~~~~~~----~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~e 269 (1215)
.++..++.+ .+..+++.+.+.+.+++.+..+|..++.+++.++...+..+.... +.+++.+.+.+. +++++
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~---~~~~~ 232 (876)
T 1qgr_A 156 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---CPDTR 232 (876)
T ss_dssp HHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT---CSSHH
T ss_pred HHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC---CCCHH
Confidence 999877544 356777888888876632247888999999998876554443221 347777777665 56789
Q ss_pred HHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHH
Q 000941 270 LREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRA 348 (1215)
Q Consensus 270 lre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~ 348 (1215)
+|..+++++..++..+|+.+.||+. .+++.++..+..+ ...||..
T Consensus 233 vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~v~~~ 278 (876)
T 1qgr_A 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD----------------------------------IDEVALQ 278 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS----------------------------------SHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC----------------------------------chHHHHH
Confidence 9999999999999999999999999 9999988766310 0267888
Q ss_pred HHHHHHHHHhhC---------------------chhhHHHHHHHHHHHHhhhc-------ccchhHHHHHHHHHHHHHHH
Q 000941 349 AAKCLAALIVSR---------------------PEMLSKLYEEACPKLIDRFK-------EREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 349 Aa~~L~~li~~~---------------------~~~l~~~~~~i~p~Li~~~~-------d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
|...+..+.... .+.....+..++|.+++.+. +.++++|..+..++..+...
T Consensus 279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH
Confidence 888877776532 12333455777888877764 34578999999999999876
Q ss_pred hcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc-hhhhhhhhhhhHHHHHhhcCC
Q 000941 401 TGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDK 479 (1215)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~-~~l~~~~~~lv~~l~~~l~d~ 479 (1215)
.+ ...++.+++.+...+.++++++|.+++.+++.++...+ ..+.++++.++|.+...++|+
T Consensus 359 ~~------------------~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~ 420 (876)
T 1qgr_A 359 CE------------------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (876)
T ss_dssp HG------------------GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cc------------------HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 53 12367788888888899999999999999999988765 457789999999999999886
Q ss_pred CCcchhHHHHHHHHHHHhccCCCCc-chhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc-------CCCcCCCC
Q 000941 480 SSTSNLKIEALTFTRLVLSSHSPPV-FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLR-------PSVEGLGF 551 (1215)
Q Consensus 480 ~~~~~~~~~al~~l~~l~~~~~~~~-~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~-------~~~~~~~~ 551 (1215)
+ +.+|..++.+++.+.+..++.. ..+|++.+++.++..+.|. .+++..+..+++.++...+ +.......
T Consensus 421 ~--~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~ 497 (876)
T 1qgr_A 421 S--VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATY 497 (876)
T ss_dssp S--HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCC
T ss_pred C--HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccch
Confidence 5 7899999999999988765432 4579999999999999886 8899999999999998764 10000124
Q ss_pred CChhcHHHHHHHHHHHhhccCC-CHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhcc-----------------
Q 000941 552 DFKPYVQPIYNAIMSRLTNQDQ-DQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN----------------- 613 (1215)
Q Consensus 552 ~~~~~l~~l~~~l~~~l~~~d~-~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~----------------- 613 (1215)
.+.||++.+++.++..+...+. +..+|..++.++|.++...|....+++..++|.+++.+..
T Consensus 498 ~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~ 577 (876)
T 1qgr_A 498 CLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF 577 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHH
Confidence 5889999999999998875432 3679999999999999999987778889999998877642
Q ss_pred chhHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhh
Q 000941 614 EITRLTAVKAFAVIAASPLH-IDLTCVLEHVIAELTAFLRKAN--RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELS 690 (1215)
Q Consensus 614 e~~r~~a~~al~~i~~s~~~-~~~~~~l~~~l~~L~~~L~~~~--~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~ 690 (1215)
...+..++.+++.++.. .+ .++.||++.+++.+...++..+ +.+|..++.+++.++...+..+. ++++.+++.+.
T Consensus 578 ~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~l~ 655 (876)
T 1qgr_A 578 NDLQSLLCATLQNVLRK-VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL-KYMEAFKPFLG 655 (876)
T ss_dssp HHHHHHHHHHHHHHHTT-SCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHH
Confidence 12356778899988855 34 5678999999999999988764 47899999999999988776665 46788888888
Q ss_pred hhcCCC-ChhhHHHHHHHHHHHhhc
Q 000941 691 TLISDS-DLHMTALALELCCTLMAD 714 (1215)
Q Consensus 691 ~~l~~~-d~~~~~~al~~l~~l~~~ 714 (1215)
+.+.+. +..++..++.+++.++..
T Consensus 656 ~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 656 IGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHH
Confidence 888765 788899999999999874
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1e-30 Score=325.11 Aligned_cols=572 Identities=14% Similarity=0.173 Sum_probs=445.7
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhccCh-hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH 125 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~ 125 (1215)
-+..++..|.++++++|..|++.++.++..+++ ..+..+++.|.... ++++++|..++.+|..++..++.. .+.
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~----~~~ 85 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP----EYV 85 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG----GGG
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH----HHH
Confidence 377889999999999999999999999876664 45677888887665 566678888888877666544331 235
Q ss_pred HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH
Q 000941 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL 205 (1215)
Q Consensus 126 ~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1215)
..++|.|...+.++ +..+|..++++|+.+....+.. ...+.+++.+.....++.+.+|..|+.+++.++...++..
T Consensus 86 ~~ll~~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~ 161 (588)
T 1b3u_A 86 HCLLPPLESLATVE--ETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV 161 (588)
T ss_dssp GGGHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 66778877666554 6899999999999998877652 1234456666666677778999999999999999999887
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
.+.+++.+.+.+.+++ ..+|..++++++.+++..|.. .+.+.++|.+...++ ++++.+|..|..++..++..+
T Consensus 162 ~~~l~~~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDT--PMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS---DEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHHHHHHHHHHHTCSC--HHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhC
Confidence 8888888888877654 489999999999999987753 356788999988887 578899999999999999887
Q ss_pred hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhH
Q 000941 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1215)
Q Consensus 286 ~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~ 365 (1215)
+.+ .+.+.+++.+.+++. |.+|+||++|+.+++.+....+..
T Consensus 235 ~~~--~~~~~~~~~l~~~~~----------------------------------d~~~~vR~~a~~~l~~l~~~~~~~-- 276 (588)
T 1b3u_A 235 PQE--DLEALVMPTLRQAAE----------------------------------DKSWRVRYMVADKFTELQKAVGPE-- 276 (588)
T ss_dssp CHH--HHHHHTHHHHHHHHT----------------------------------CSSHHHHHHHHHTHHHHHHHHCHH--
T ss_pred CHH--HHHHHHHHHHHHHcc----------------------------------CCCHHHHHHHHHHHHHHHHHhCcc--
Confidence 743 244556666665542 235999999999999998765431
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHH
Q 000941 366 KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVG 445 (1215)
Q Consensus 366 ~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~ 445 (1215)
.+...++|.++..++|.++.||..++.+++.+....+. ......+++.+++.+.+.++++++.+|..
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-------------~~~~~~~~~~l~p~l~~~l~d~~~~vR~~ 343 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA-------------DCRENVIMSQILPCIKELVSDANQHVKSA 343 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT-------------TTHHHHHHHTHHHHHHHHHTCSCHHHHHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh-------------hhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 23456788888888999999999999999999876541 11112467788888888899999999999
Q ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCch
Q 000941 446 AFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYY 525 (1215)
Q Consensus 446 ~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~ 525 (1215)
++..++.++...+.. ...+.++|.+...++|.+ +.+|..++..++.+.+..+. ..+.+.++|.+...++|+++
T Consensus 344 a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~ 416 (588)
T 1b3u_A 344 LASVIMGLSPILGKD--NTIEHLLPLFLAQLKDEC--PEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKW 416 (588)
T ss_dssp HHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSC--HHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCc
Confidence 999999998876542 245678899999998764 78999999998888876542 23567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHH
Q 000941 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLP 605 (1215)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~ 605 (1215)
+++..++.+++.++..+++. .+.+.+++.++..+. |.+.+||+.|+.++|.++..+|... +.+.++|
T Consensus 417 ~vr~~~~~~l~~l~~~~~~~---------~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp 483 (588)
T 1b3u_A 417 RVRLAIIEYMPLLAGQLGVE---------FFDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIP 483 (588)
T ss_dssp HHHHHHHHHHHHHHHHHCGG---------GCCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHH
T ss_pred hHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHH
Confidence 99999999999999877542 123567888888775 6678999999999999999887532 4678888
Q ss_pred HHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH-
Q 000941 606 VLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY- 682 (1215)
Q Consensus 606 ~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~- 682 (1215)
.+...+++ ..+|..++.+++.++..- ....+.+.+++.|...++++++.+|..++.+++.+....+. ..+
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~ 556 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVC---GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----STLQ 556 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hhhH
Confidence 88876654 358899999999987421 12457888999999999999999999999999999876654 222
Q ss_pred HHHHHHhhhhcCCCChhhHHHHHHHHHHHh
Q 000941 683 EVIIVELSTLISDSDLHMTALALELCCTLM 712 (1215)
Q Consensus 683 ~~~l~~l~~~l~~~d~~~~~~al~~l~~l~ 712 (1215)
+.+++.+..++.++|..++..+..+++.+.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 456666667788999999999999988754
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=9.1e-30 Score=316.46 Aligned_cols=569 Identities=12% Similarity=0.128 Sum_probs=445.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCC-hHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-hh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKAD-ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PR 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~~ 81 (1215)
+.|..+++.+.|.|+++|.+|+..|.+.... +. ......+++.+.... |++.+||..+.++++.+...++. .+
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~----~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALA----LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHH----SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred CcHHHHHHHhhcccHHHHHHHHHhHHHHHHH----hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 6789999999999999999999998765432 22 234456777777666 88899999999999998876643 45
Q ss_pred HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000941 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1215)
Q Consensus 82 ~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1215)
+..+++.|...+.+++..+|..+..+|+.+++..+. ..+.+.++|.+.....++ ++.+|..++.+++.+....+
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~----~~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP----SDLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH----HHHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhcC
Confidence 667788877777677788999999999999987764 123445666665544443 68899999999999887776
Q ss_pred hhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 000941 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1215)
Q Consensus 162 ~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1215)
.. ..+.+++.+...+.++++.||+.|+.+++.++...+.+ ....+++.+...+.++++ .+|..++.+++.++..
T Consensus 159 ~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 SA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD--SVRLLAVEACVNIAQL 233 (588)
T ss_dssp HH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCH--HHHTTHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHh
Confidence 53 45778888888889999999999999999999999876 457788888888877653 7899999999999988
Q ss_pred hhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCccc
Q 000941 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD 320 (1215)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~ 320 (1215)
.+.. .+.+.++|.+.+.++ +.+..+|..+..++..++...+.+ .+.+.+++.+.+.++
T Consensus 234 ~~~~--~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~--------------- 291 (588)
T 1b3u_A 234 LPQE--DLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMK--------------- 291 (588)
T ss_dssp SCHH--HHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHT---------------
T ss_pred CCHH--HHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhC---------------
Confidence 7643 245678888888776 577889999999999998876533 245677888877764
Q ss_pred ccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhH--HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 000941 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS--KLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1215)
Q Consensus 321 ~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~--~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~ 398 (1215)
|.+|.||++|+.+++.+....+.... .+++.++|.+...++|.++.||..++.++..+.
T Consensus 292 -------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 292 -------------------DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp -------------------CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred -------------------CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11378999999999999988764322 467788888888889999999999999988887
Q ss_pred HHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcC
Q 000941 399 RQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478 (1215)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d 478 (1215)
...+ . ....+.+++.+...++++++.+|..++..++.+....+. ..+.+.++|.+...++|
T Consensus 353 ~~~~-------------~----~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 353 PILG-------------K----DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAED 413 (588)
T ss_dssp HHHC-------------H----HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTC
T ss_pred HHhh-------------H----hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcC
Confidence 7654 1 123467777888888898889999999999999887653 23567788888888877
Q ss_pred CCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH
Q 000941 479 KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ 558 (1215)
Q Consensus 479 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~ 558 (1215)
++ ..+|..++.+++.+....++.. +.+.++|.+...++|+.+.++..|+.+++.++..+++ ..+..
T Consensus 414 ~~--~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---------~~~~~ 479 (588)
T 1b3u_A 414 AK--WRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---------EWAHA 479 (588)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---------HHHHH
T ss_pred CC--chHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---------hhHHH
Confidence 54 6889999999999887655432 3457889999999999999999999999999987743 12456
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcCCCCCch
Q 000941 559 PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDL 636 (1215)
Q Consensus 559 ~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~~~~~~ 636 (1215)
.++|.+...+. +.+..+|..++.++|.++...|.. .+.+.++|.+...++++ .+|..++++++.++..- +.
T Consensus 480 ~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~-- 552 (588)
T 1b3u_A 480 TIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL-DN-- 552 (588)
T ss_dssp HTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS-CH--
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh-ch--
Confidence 77777776543 667899999999999999887643 36788999999988764 58999999999998532 21
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000941 637 TCVLEHVIAELTAFLRKANRALRQATLGTMNSL 669 (1215)
Q Consensus 637 ~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l 669 (1215)
..+.+.++|.|..++.+.|..+|..+..+++.+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 222357778888877788999999999998865
No 11
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.94 E-value=1.2e-22 Score=266.69 Aligned_cols=670 Identities=10% Similarity=0.047 Sum_probs=436.6
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC---cccchhHHHHHHHHHHhhccChhhHHHHHHHHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD---VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLC 90 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D---~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~ 90 (1215)
.+.|+.+|+.|+.-|++.+.+.|.+++++....+.+.++..+.. ..+-||++...|++.++.+..+ .|+.+++.|+
T Consensus 50 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~ 128 (971)
T 2x1g_F 50 LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVI 128 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHH
T ss_pred cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHH
Confidence 36788999999999999999988888877777777777766654 2478999999999999987655 8999999999
Q ss_pred HHhcCC------CcchhhHHHHHHHHHHhccCc------h-hh---HHHHHHhHhHHHHhhhhccCCC------hhHHHH
Q 000941 91 IKLLNG------KDQHRDIASIALKTIIAEVTT------S-SL---AQSIHTSLTPQLTKGITLKDMN------TEIRCE 148 (1215)
Q Consensus 91 ~~~~~~------~~~~r~~a~~aL~~~i~~~~~------~-~~---~~~~~~~l~p~L~~~l~~~~~~------~~v~~~ 148 (1215)
..+.++ ++..+..+...|+.+++++.. . .+ ....++.+++.+.+.+++...+ ..++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~ 208 (971)
T 2x1g_F 129 NTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNR 208 (971)
T ss_dssp HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHH
Confidence 988653 344677888888888865321 0 01 1112234444444444432211 167888
Q ss_pred HHHHHHHHHHH--hhhhhhhhHHHHHHHHhhhhc----------------CChHHHHHHHHHHHHHHHhhcC----HHHH
Q 000941 149 CLDILCDVLHK--FGNLMSNDHERLLSALLPQLS----------------ANQASVRKKSVSCIASLASSLS----DDLL 206 (1215)
Q Consensus 149 al~~L~~l~~~--~g~~l~~~~~~ll~~ll~~l~----------------~~~~~vrk~a~~~l~~l~~~~~----~~~~ 206 (1215)
++.++...+.. .+.. ....+++.++. +. ++.+.+|+.|+.|+..+...-. ...+
T Consensus 209 al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~ 284 (971)
T 2x1g_F 209 AVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTA 284 (971)
T ss_dssp HHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHH
T ss_pred HHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHH
Confidence 88888877764 2222 34566676666 41 1356899999999999987422 2345
Q ss_pred HHHHHHHHHHhhc-----CCCC---hHHHHHHHHHHHHHHhhhhhhh-----------ccchhhhHHHHHHhhcccC--C
Q 000941 207 AKATIEVVRNLRS-----KGAK---PEMIRTNIQMVGALSRAVGYRF-----------GPHLGDTVPVLIDYCTSAS--E 265 (1215)
Q Consensus 207 ~~l~~~ll~~l~~-----~~~~---~~~~~~~i~~l~~l~~~~~~~~-----------~~~l~~iip~ll~~~~~~~--~ 265 (1215)
..+++.++..... .+.+ .+........+..++...+..+ .+++..+++.++....... .
T Consensus 285 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~ 364 (971)
T 2x1g_F 285 FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYP 364 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTT
T ss_pred HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCC
Confidence 5566555542211 1111 1455666777777775544333 2578888888888664210 2
Q ss_pred CcHHHHHHHHHHHHHHHHhC------------hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchh----
Q 000941 266 NDEELREYSLQALESFLLRC------------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED---- 329 (1215)
Q Consensus 266 ~d~elre~al~~l~~l~~~~------------~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~---- 329 (1215)
++++++..+++++..++... ...++|+++.+++.++.-+.|+++.. .++.+.++++++.+.
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~---~~~~d~~e~~~f~~~R~~~ 441 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS---LAKWSSDDLECFRCYRQDI 441 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT---TSCSCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccCHhHHHHHHHHHHHH
Confidence 46778888998888876621 23567899999999998887643211 000010000010000
Q ss_pred -------------h---------hc--CCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhc--ccc
Q 000941 330 -------------E---------SA--NEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK--ERE 383 (1215)
Q Consensus 330 -------------~---------~~--~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~--d~e 383 (1215)
+ .. ..|. .+...|+.|++|..+++++.+..++...+....+++ ++..+. |.+
T Consensus 442 ~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~ 519 (971)
T 2x1g_F 442 SDTFMYCYDVLNDYILEILAAMLDEAIADLQ-RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccC
Confidence 0 00 0000 112579999999999999887655433345555565 333444 457
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD 463 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~ 463 (1215)
+.||..++.+++.+.+.... -.++++.+++.+.+.+ + ++++..|+.++..+++..+..+.+
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~----------------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p 580 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLME----------------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKP 580 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC--------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999988876531 0245677777777777 3 679999999999999988888999
Q ss_pred hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc----CC--ch---HHHHHHHHH
Q 000941 464 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG----ER--YY---KVTAEALRV 534 (1215)
Q Consensus 464 ~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~----d~--~~---~v~~~al~~ 534 (1215)
|++.++..+...+.....+...+...+.+++.++...+++...+|+..+++.+...++ .. .. .....+++.
T Consensus 581 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 660 (971)
T 2x1g_F 581 YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNM 660 (971)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 9999999999998865444567888889999998766556777888888888887654 21 11 234456666
Q ss_pred HHHHHHhccCCCcC-C-----CCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHH
Q 000941 535 CGELVRVLRPSVEG-L-----GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 608 (1215)
Q Consensus 535 l~~l~~~~~~~~~~-~-----~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~ 608 (1215)
++.++..+++.... . ...+.++.+.+++.+...+.....+.+|.+.++.++|.++..+|..+.|+++.+++.+.
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 66666665432100 0 23578899999999988886544467999999999999999999989999999999999
Q ss_pred HhhccchhHHHHHHHHHHHHcCCCCCc------hhHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHhCC
Q 000941 609 DRMGNEITRLTAVKAFAVIAASPLHID------LTCVLEHVIAELTAFLRK-------ANRALRQATLGTMNSLVVAYGD 675 (1215)
Q Consensus 609 ~~L~~e~~r~~a~~al~~i~~s~~~~~------~~~~l~~~l~~L~~~L~~-------~~~~lr~~al~~L~~l~~~~~~ 675 (1215)
..+++... ..+++.++.++.. .+.+ +.+.+..+.......+.+ +++.++...+..+..++.+++.
T Consensus 741 ~~~~~~~~-~~~l~l~~~~i~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 741 ASFQTRCC-APTLEISKTAIVM-FFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp HHCC--CC-HHHHHHHHHHHTT-CCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHhcCCc-hHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence 88876432 3577888888753 2221 233333333333333322 3667999999999999988876
Q ss_pred CC-Ccch-HHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 676 KI-GASA-YEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 676 ~~-~~~~-~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.+ ..+. +..++......+...+......++.+|..++..
T Consensus 819 ~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 819 VLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 53 3455 788888777777667777777888888887764
No 12
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.93 E-value=4.1e-22 Score=261.85 Aligned_cols=669 Identities=12% Similarity=0.054 Sum_probs=453.7
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC---cccchhHHHHHHHHHHhhccChhhHHHHHHHHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD---VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLC 90 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D---~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~ 90 (1215)
++.++.+|+.|+.-|++.+.+.|..++++....+.+.++..+.. ..+-||++...+++.++...-++.|+.+++.|+
T Consensus 68 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~ 147 (963)
T 2x19_B 68 PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMV 147 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence 36788999999999999999988888887777777777777654 357899999999999998755567999999999
Q ss_pred HHhcC-----CCcchhhHHHHHHHHHHhccCchh-----------hHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 91 IKLLN-----GKDQHRDIASIALKTIIAEVTTSS-----------LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 91 ~~~~~-----~~~~~r~~a~~aL~~~i~~~~~~~-----------~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
..+.+ +++..+..+...|+.+++++.... ......+.+++.+...+++...+..+...++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~ 227 (963)
T 2x19_B 148 RLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFS 227 (963)
T ss_dssp HHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHH
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 98864 133457788888888887542100 01122445555555555543322246777777776
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHH-------hhcCCCC
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS----DDLLAKATIEVVRN-------LRSKGAK 223 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~----~~~~~~l~~~ll~~-------l~~~~~~ 223 (1215)
..+. .|..+. ....+++.++..+. .+.+|..|+.|+..+..... ...+..+++.++.. +.. . +
T Consensus 228 ~wi~-~~~~~~-~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-d 301 (963)
T 2x19_B 228 SWVQ-LEVPLQ-DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQN-G-D 301 (963)
T ss_dssp HHHT-SSCCGG-GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHT-T-C
T ss_pred HHHc-CCCCcc-cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHC-C-C
Confidence 5554 444332 23567777777774 46789999999999986432 23455555544432 222 2 2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhc------cchhhhHHHHHHhhcccC--CCcHHHHHHHHHHHHHHHHhC----------
Q 000941 224 PEMIRTNIQMVGALSRAVGYRFG------PHLGDTVPVLIDYCTSAS--ENDEELREYSLQALESFLLRC---------- 285 (1215)
Q Consensus 224 ~~~~~~~i~~l~~l~~~~~~~~~------~~l~~iip~ll~~~~~~~--~~d~elre~al~~l~~l~~~~---------- 285 (1215)
.+..+....++..++...+..+. +++..+++.+++...... +.+++++..|+..+..++...
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~ 381 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAV 381 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHH
Confidence 24555667777777766554443 577788888887665310 135667888888888887621
Q ss_pred -hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccch-----------------hh-----------hcCCCC
Q 000941 286 -PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE-----------------DE-----------SANEYT 336 (1215)
Q Consensus 286 -~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d-----------------~~-----------~~~~~~ 336 (1215)
...+.|++.++++.++..+.|.++..- ++.|+| +++++++ ++ .-..|
T Consensus 382 ~~~~~~~~l~~l~~~ll~~~~~p~~~~~-~~~~~d--e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~- 457 (963)
T 2x19_B 382 YQQVYRPVYFQLVDVLLHKAQFPSDEEY-GFWSSD--EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS- 457 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHH-HTSCHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccc-cCCChh--HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc-
Confidence 235678999999999988875321000 000000 0000100 00 00111
Q ss_pred CCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh
Q 000941 337 DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1215)
Q Consensus 337 dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1215)
.++.+|+.|+++..+++++.+...+...++...+++.+. .+.+.++.||..++.+++...+....
T Consensus 458 -~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~------------- 522 (963)
T 2x19_B 458 -EEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD------------- 522 (963)
T ss_dssp -CCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH-------------
T ss_pred -CCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh-------------
Confidence 134579999999999999988765433345556666443 45555778999999988888765421
Q ss_pred hhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHH
Q 000941 417 RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1215)
Q Consensus 417 ~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1215)
-.++++.+++.+...+.+ ++++..|+.+|..+++..+..+.+|++.+++.+...+.........+...+..++.+
T Consensus 523 ---~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 523 ---HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp ---CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 025677888888888865 679999999999999988888899999999999988875333356777888888998
Q ss_pred hccCCCCcchhhhhhhHHHHHHHhcC-----Cch---HHHHHHHHHHHHHHHhccCCCcC---------------CCCCC
Q 000941 497 LSSHSPPVFHPYIKALSSPVLAAVGE-----RYY---KVTAEALRVCGELVRVLRPSVEG---------------LGFDF 553 (1215)
Q Consensus 497 ~~~~~~~~~~~~l~~l~p~l~~~l~d-----~~~---~v~~~al~~l~~l~~~~~~~~~~---------------~~~~~ 553 (1215)
+...+++.+.+|+..+++.+...++. ... +.....+.+++.+++.++..... ....+
T Consensus 598 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (963)
T 2x19_B 598 LSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPV 677 (963)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCch
Confidence 87654456778999999998877641 122 33446778888888877642110 01224
Q ss_pred hhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHc--CC
Q 000941 554 KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA--SP 631 (1215)
Q Consensus 554 ~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~--s~ 631 (1215)
.++.+.+++.+...+..-..+.++++.++.+++.++..+|+.+.++++.+++.++...++.. ....++.++.++. ..
T Consensus 678 ~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 678 VVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhCC
Confidence 56888899988887765445689999999999999999999888999988888876654421 1234556666653 21
Q ss_pred CCCchhHHHH----HHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhCCCC-Ccch-HHHHHHHhhhhcCCCChhhHH
Q 000941 632 LHIDLTCVLE----HVIAELTAFLRK---ANRALRQATLGTMNSLVVAYGDKI-GASA-YEVIIVELSTLISDSDLHMTA 702 (1215)
Q Consensus 632 ~~~~~~~~l~----~~l~~L~~~L~~---~~~~lr~~al~~L~~l~~~~~~~~-~~~~-~~~~l~~l~~~l~~~d~~~~~ 702 (1215)
...+.+++. .++..+.+.+.+ .++.++...+..+..++.+++..+ .++. +..++..+...++..+..+..
T Consensus 757 -~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 757 -EPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp -CTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHH
Confidence 112234444 444444444543 358899999999999999887653 3444 888999888888889999999
Q ss_pred HHHHHHHHHhhc
Q 000941 703 LALELCCTLMAD 714 (1215)
Q Consensus 703 ~al~~l~~l~~~ 714 (1215)
.++.++..++..
T Consensus 836 ~~l~~l~~l~~~ 847 (963)
T 2x19_B 836 ASCGFFTELLPR 847 (963)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=7.2e-23 Score=245.94 Aligned_cols=411 Identities=12% Similarity=0.123 Sum_probs=316.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHhh-------
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV--AGDVSGLAVKCLAPLVK------- 75 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~--~~~Vq~~A~~~l~~l~~------- 75 (1215)
.|..+|+++.++|+++|.+|...|.+ +.+ .....+...|+..+.++ +..||..|...|..++.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~-~~~-------~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLER-AAV-------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHH-HHh-------hChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 46789999999999999999999966 332 11345667777777765 57899999999998863
Q ss_pred --------ccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHH
Q 000941 76 --------KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1215)
Q Consensus 76 --------~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~ 147 (1215)
.++++....+-..|+..+.++++.+ ..++.++..+.....+ ...+..++|.|++.+.+.+.++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~----~~~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP----VNQWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG----GTCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc----ccccHHHHHHHHHHhccCCCCHHHHH
Confidence 3555555667778888887777777 7778888777653211 11357788999998876411478999
Q ss_pred HHHHHHHHHHHHh-hhhhhhhHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH----H-HHHHHHHHHHhhc
Q 000941 148 ECLDILCDVLHKF-GNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL----L-AKATIEVVRNLRS 219 (1215)
Q Consensus 148 ~al~~L~~l~~~~-g~~l~~~~~~ll~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~----~-~~l~~~ll~~l~~ 219 (1215)
.++.+|+.+++.+ +..+.++.+.+++.++..+.++ ++.||+.|+.+++.+..++.+.. + +.+++.+.+.+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999987 6667788999999999999988 68999999999999876654332 2 2245555554444
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhhhhccchh-hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC-------------
Q 000941 220 KGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRC------------- 285 (1215)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~-~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~------------- 285 (1215)
++ .++|..++++++.++...+..|.+|++ .+++.++..+. +.++++|..+++++..++...
T Consensus 229 ~~--~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 229 PD--TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK---SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp SS--HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 33 478999999999999999999999999 99999998887 578899999999888887642
Q ss_pred --------hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHH
Q 000941 286 --------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1215)
Q Consensus 286 --------~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li 357 (1215)
...+.+|++.+++.+++.+... |+ |++|.+|.+|++|+.+|+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~-------d~--------------------d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQ-------DE--------------------NDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCC-------CS--------------------SCCTTCCSHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhc-------cc--------------------ccccccchHHHHHHHHHHHHH
Confidence 2235567889999988887410 00 012235899999999999999
Q ss_pred hhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc
Q 000941 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1215)
Q Consensus 358 ~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~ 437 (1215)
..+++ .++..++|.+...++++++.+|..++.+++.+..... + ..+..+++.+++.+.+.+++
T Consensus 357 ~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-------------~-~~~~~~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-------------P-SQLKPLVIQAMPTLIELMKD 419 (462)
T ss_dssp HHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------T-TTTCTTTTTHHHHHHHGGGC
T ss_pred HhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-------------H-HHHHHHHHHHHHHHHHHhcC
Confidence 98884 4556788888888899999999999999988864211 0 12344568889999999999
Q ss_pred cChhhHHHHHHHHHHHHHhCchhh--hhhhhhhhHHHHHhhc
Q 000941 438 KSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLN 477 (1215)
Q Consensus 438 ~~~~~r~~~~~~l~~L~~~~~~~l--~~~~~~lv~~l~~~l~ 477 (1215)
+++.+|..|+.+++.++...++.+ .+|++.+++.+..+|+
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999999999999999999887765 4689999998887664
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.91 E-value=1.1e-20 Score=246.83 Aligned_cols=644 Identities=11% Similarity=0.063 Sum_probs=403.9
Q ss_pred CCCcchhhhhHHHHHHHhccccC------CCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHH
Q 000941 15 GKDKDFRYMATSDLLNELNKESF------KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1215)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~------~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~ 88 (1215)
+.+..+|++|+.-|+|.+.+.|. .++++....|...++..+.++++.||+++..+++.++..-.+..|+.+++.
T Consensus 48 ~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 35678999999999999988764 678888888999999999887899999999999999986444789999999
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhccCc----hhhHH---HHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000941 89 LCIKLLNGKDQHRDIASIALKTIIAEVTT----SSLAQ---SIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1215)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~----~~~~~---~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1215)
|++.+.+++...+..+..+|..+++.... ++... .++....|.+++
T Consensus 128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~--------------------------- 180 (960)
T 1wa5_C 128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLN--------------------------- 180 (960)
T ss_dssp HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 99999877767778888888888875431 00000 011112221111
Q ss_pred hhhhhhHHHHHHHHhhhhcCChH---------HHHHHHHHHHHHHHhh-cCHH---HHHHHHHHHHHHhhcC--------
Q 000941 162 NLMSNDHERLLSALLPQLSANQA---------SVRKKSVSCIASLASS-LSDD---LLAKATIEVVRNLRSK-------- 220 (1215)
Q Consensus 162 ~~l~~~~~~ll~~ll~~l~~~~~---------~vrk~a~~~l~~l~~~-~~~~---~~~~l~~~ll~~l~~~-------- 220 (1215)
+...+...+.++.. .+++.+++++..+... .+.. .+...++.+.+.+...
T Consensus 181 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~ 251 (960)
T 1wa5_C 181 ---------LLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD 251 (960)
T ss_dssp ---------HHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC---
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCc
Confidence 11111111222110 1223344444443311 1221 2445555555555321
Q ss_pred CCC-----hHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhccc--CCCcHHHHHHHHHHHHHHHHhC--hhhhc-
Q 000941 221 GAK-----PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--SENDEELREYSLQALESFLLRC--PRDIS- 290 (1215)
Q Consensus 221 ~~~-----~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~--~~~d~elre~al~~l~~l~~~~--~~~~~- 290 (1215)
+.+ ...++.++.++..++...+..|.||++.+++.+++.+... ...++.++..+++.+..+++.- .+.++
T Consensus 252 d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~ 331 (960)
T 1wa5_C 252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNN 331 (960)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcC
Confidence 000 1356678899999999889999999999999998877521 1356778888888887776532 23555
Q ss_pred -ccHHHHH-HHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH
Q 000941 291 -SYCDEIL-HLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY 368 (1215)
Q Consensus 291 -~~l~~ii-~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~ 368 (1215)
+|++.++ +.+++++.|.+. |++. - ++|.+++..++ . |++..|.+|++|..+|..+...+++.+ .
T Consensus 332 ~~~l~~li~~~i~~~m~~~~~---d~e~----w-~~dp~e~i~~d-~--e~~d~~s~R~aa~~~L~~l~~~~~~~v---~ 397 (960)
T 1wa5_C 332 ESAMNNITEQIILPNVTLREE---DVEL----F-EDDPIEYIRRD-L--EGSDTDTRRRACTDFLKELKEKNEVLV---T 397 (960)
T ss_dssp HHHHHHHHHHTHHHHHSCCGG---GTTT----T-TTCHHHHHHHH-H--HC----CHHHHHHHHHHHHHHHCHHHH---H
T ss_pred chHHHHHHHHHhHHhcCCCHH---HHHH----H-hcCHHHHHHhc-c--CcccccCcHHHHHHHHHHHHHHcchhH---H
Confidence 8999999 799999976532 1000 0 00011110000 0 112347899999999999999988433 3
Q ss_pred HHHHHHHHhhhc------ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCC-ChhhHHHHHHHHHHHHHHHHhccc---
Q 000941 369 EEACPKLIDRFK------EREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL-NPRWLLKQEVSKIVKSINRQLREK--- 438 (1215)
Q Consensus 369 ~~i~p~Li~~~~------d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~~p~i~~~l~~~L~~~--- 438 (1215)
..+++.+.+.+. ..++..|..++.+++.+........+ +... .+.-.+. +-+.+.+...+.++
T Consensus 398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~----~~~~~~~~~~l~---~~l~~~v~p~l~~~~~~ 470 (960)
T 1wa5_C 398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA----GVSSTNNLLNVV---DFFTKEIAPDLTSNNIP 470 (960)
T ss_dssp HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT----BCCCBCTTCCHH---HHHHHHTHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC----CcccccccccHH---HHHHHHhHHHhcCCCCC
Confidence 334444433333 45678888899999888642110000 0000 0000122 22333444555666
Q ss_pred ChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC----------CCCcchhh
Q 000941 439 SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH----------SPPVFHPY 508 (1215)
Q Consensus 439 ~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~----------~~~~~~~~ 508 (1215)
++.+|..++.+++.+.+..+ ..++..+++.+...|.+++ ..++..|..++..+++.. ..+.+.||
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~--~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~ 545 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDE--YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS 545 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT
T ss_pred CceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhcccccccccccccHHHhhhh
Confidence 77899999999999988753 2478999999999998753 678999999999988742 13457899
Q ss_pred hhhhHHHHHHHhcCCc---hH--HHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc---cCCCHHHHHH
Q 000941 509 IKALSSPVLAAVGERY---YK--VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN---QDQDQEVKEC 580 (1215)
Q Consensus 509 l~~l~p~l~~~l~d~~---~~--v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~---~d~~~~Vr~~ 580 (1215)
++.+++.+...++... .+ ....++.+++.++..++ +.+.||+..+++.+...+.. +..+...+..
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-------~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 618 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE-------DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHY 618 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-------TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999998887531 11 33567778888887763 46899999999988888764 2345778888
Q ss_pred HHHHHHHHHHhcc-CcccchhhhhHHHHHHhhccc--hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHH--HHHHHhh
Q 000941 581 AISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELT--AFLRKAN 655 (1215)
Q Consensus 581 Ai~~lg~l~~~~~-~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~--~~L~~~~ 655 (1215)
++.|+|.++...+ +.+.++.+.++|.+...+++. .....+...++.+.... ..+.+++..+++.+. ..+...
T Consensus 619 ~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~- 695 (960)
T 1wa5_C 619 TFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWELK- 695 (960)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCCT-
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcCC-
Confidence 9999999988744 345567888899888877654 34455777777766322 335666666666665 333322
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch-hhhhhhhhHHHHH
Q 000941 656 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQAL 734 (1215)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~ 734 (1215)
..-.....+|...+...+..+.. ++.++..+..++.+... ...++..++.++.. .|.. ...|.+.+++.++
T Consensus 696 -~~~~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~---~~~~~~~~yl~~i~~~l~ 767 (960)
T 1wa5_C 696 -GNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLL---IDMNRLRPYIKQIAVLLL 767 (960)
T ss_dssp -TTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHH---SCHHHHGGGHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
Confidence 23334555666665554443332 34455555555544332 36788999988885 3332 3444555555554
Q ss_pred HHhh
Q 000941 735 ALIK 738 (1215)
Q Consensus 735 ~ll~ 738 (1215)
..++
T Consensus 768 ~~l~ 771 (960)
T 1wa5_C 768 QRLQ 771 (960)
T ss_dssp HGGG
T ss_pred HHHh
Confidence 4443
No 15
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.88 E-value=1.5e-18 Score=228.55 Aligned_cols=674 Identities=11% Similarity=0.097 Sum_probs=414.3
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCc---------ccchhHHHHHHHHHHhhc
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV---------AGDVSGLAVKCLAPLVKK 76 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~---------~~~Vq~~A~~~l~~l~~~ 76 (1215)
+..++.. +.++.+|++|+.-|++.+.+.|..++++....+...++..+.+. ++.||+....+++.++..
T Consensus 53 l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~ 130 (1049)
T 3m1i_C 53 ADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1049)
T ss_dssp HHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444544 56889999999999999999998889888888888888887643 378999999999999987
Q ss_pred cChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc---h-----------hhHHHHHHhHhHHHHhhhhccCCC
Q 000941 77 VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---S-----------SLAQSIHTSLTPQLTKGITLKDMN 142 (1215)
Q Consensus 77 ~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~-----------~~~~~~~~~l~p~L~~~l~~~~~~ 142 (1215)
--+..|+.+++.|+..+. +++..++.+..+|+.+++++.. . .........+++.+.+.+++.. +
T Consensus 131 ~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~ 208 (1049)
T 3m1i_C 131 EWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-S 208 (1049)
T ss_dssp HTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred hCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 555789999999999885 4445577888889988875431 0 1112223445555556665543 5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CH------HHHHHHHHHHHH
Q 000941 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL-SD------DLLAKATIEVVR 215 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~-~~------~~~~~l~~~ll~ 215 (1215)
..++..++.++...+........ ..+.+++.++..+. +++.+|..|+.|+..++..- ++ ..+..+++.++.
T Consensus 209 ~~~~~~aL~~l~~~l~wi~~~~~-~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHWIPYRYI-YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp HHHHHHHHHHHHHHTTTSCTHHH-HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHHH-hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 67888888888776554332110 11345565553332 25789999999999988652 11 123333344444
Q ss_pred Hhhc---------------CC-CChHHHHHHHHHHHHHHhhhh------hhhccchhhhHHHHHHhhcccCCCcHHHHHH
Q 000941 216 NLRS---------------KG-AKPEMIRTNIQMVGALSRAVG------YRFGPHLGDTVPVLIDYCTSASENDEELREY 273 (1215)
Q Consensus 216 ~l~~---------------~~-~~~~~~~~~i~~l~~l~~~~~------~~~~~~l~~iip~ll~~~~~~~~~d~elre~ 273 (1215)
.+.. ++ .+.+..+....++..++.... ..+.+++..+++.++.... .+|++++..
T Consensus 287 ~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~---~~d~~v~~~ 363 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK---IEERELFKT 363 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT---SSCHHHHHH
T ss_pred HHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc---CCcHHHHHH
Confidence 3221 11 112233344455544443321 2356778888999998766 358889999
Q ss_pred HHHHHHHHHH------hChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccc-cccccchh-h---------------
Q 000941 274 SLQALESFLL------RCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDE-AYEEEEED-E--------------- 330 (1215)
Q Consensus 274 al~~l~~l~~------~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~-~~~~~~d~-~--------------- 330 (1215)
|+..+..++. .+...+.++++++++.++..+.|.+.....+|++.+.. ++++++|+ .
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~ 443 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc
Confidence 9998888877 23456789999999999999987432110000110000 00000000 0
Q ss_pred --hc---------CCCCCCCCccHHHHHHHHHHHHHHHhhCchhh-HHHHHHHHHHHHhhh-----cccchhHHHHHHHH
Q 000941 331 --SA---------NEYTDDEDASWKVRRAAAKCLAALIVSRPEML-SKLYEEACPKLIDRF-----KEREENVKMDVFNT 393 (1215)
Q Consensus 331 --~~---------~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l-~~~~~~i~p~Li~~~-----~d~e~~Vr~~~~~~ 393 (1215)
.+ ..+-.....+|+.|++|..+++++.....+.. ..+...+++.+.... ++....||..++.+
T Consensus 444 ~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~ 523 (1049)
T 3m1i_C 444 NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYV 523 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Confidence 00 00001124579999999999998876554332 234555665554421 13445566556666
Q ss_pred HHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhh--------hhh
Q 000941 394 FIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA--------DHI 465 (1215)
Q Consensus 394 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~--------~~~ 465 (1215)
++...+... .-.++++.+++.+...+.+++++++..|+.+|..+++..+..+. +|+
T Consensus 524 lgry~~~~~----------------~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 524 VGQYPRFLK----------------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHCHHHHH----------------HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred HHHHHHHHH----------------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 655443321 01356888999999899888899999999999999998776664 899
Q ss_pred hhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCC-CcchhhhhhhHHHHHHHhcC--------C----ch---HHHH
Q 000941 466 GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHPYIKALSSPVLAAVGE--------R----YY---KVTA 529 (1215)
Q Consensus 466 ~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~l~~l~p~l~~~l~d--------~----~~---~v~~ 529 (1215)
+.++..+...+.... ..-....+..++.++...+. +...+|+..+++.+...++. . ++ +...
T Consensus 588 ~~il~~l~~~~~~~~--~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 665 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQ--PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIA 665 (1049)
T ss_dssp HHHHHTHHHHHTTSC--HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHH
Confidence 999999888877532 33344556777777766552 34667899988887755421 0 11 1123
Q ss_pred HHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc-----------CC----CH------HHHHHHHHHHHHH
Q 000941 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-----------DQ----DQ------EVKECAISCMGLV 588 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-----------d~----~~------~Vr~~Ai~~lg~l 588 (1215)
..+.++..++..++ ..|.|++..++..++...+.. .. .+ .++..-...+...
T Consensus 666 ~~l~~~~~~~~~l~-------~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~ 738 (1049)
T 3m1i_C 666 NIIKTNVAVCTSMG-------ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETY 738 (1049)
T ss_dssp HHHHHHHHHHHHHG-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777774 468888887776655433210 00 00 1111111122222
Q ss_pred HHhcc---CcccchhhhhHHHHHHhhccc--hhH-HHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHH----H---Hhh
Q 000941 589 ISTFG---DNLGAELPACLPVLVDRMGNE--ITR-LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL----R---KAN 655 (1215)
Q Consensus 589 ~~~~~---~~l~~~~~~~l~~L~~~L~~e--~~r-~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L----~---~~~ 655 (1215)
..... ....++++..+..++...++. ..| ..++..++.++.. .+..+.+|++.+++.+.... . .++
T Consensus 739 ~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~-~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~ 817 (1049)
T 3m1i_C 739 ISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEK-VGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1049)
T ss_dssp HHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHH-HGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhcchhhC
Confidence 22210 112234455555454433221 111 2356666766632 12345788888877776553 2 246
Q ss_pred hHHHHHHHHHHHHHHHHhCCCC---CcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 656 RALRQATLGTMNSLVVAYGDKI---GASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~---~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
+.+|...+..++.++.+++..+ ++..+..+++...-.+..++..+...++.++..+...
T Consensus 818 pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 7899999999999998887652 3344677777777777888888888999988888764
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.86 E-value=3.3e-19 Score=213.97 Aligned_cols=437 Identities=13% Similarity=0.164 Sum_probs=312.3
Q ss_pred HHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhccCchhhHHHHHH
Q 000941 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1215)
Q Consensus 49 ~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1215)
..++..+.+|++++|++|.+.|..+-.. ..+.+...|+..+.++ +...|..|+..||..+...... .... ..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~-~~~~-~~ 77 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD-IKAQ-YQ 77 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH-HHHH-HH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchH-HHHH-HH
Confidence 3466667789999999999999886531 2344555555555543 4568999999999887532210 0000 00
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-H
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-D 204 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-~ 204 (1215)
..+.. +. +....+.+.+++.+.++++.+ +.+..+++.++..... .
T Consensus 78 -------------------------------~~~~~-l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~ 124 (462)
T 1ibr_B 78 -------------------------------QRWLA-IDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN 124 (462)
T ss_dssp -------------------------------HHHHT-SCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT
T ss_pred -------------------------------hhhhc-CCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc
Confidence 00111 11 234556666777777777778 8899999999887533 3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 205 ~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
.+..+++.+++.+.++..+...|..++.+++.+++.. +..+.+|++.+++.+++.+++. +.+.++|..+++++..++.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHH
Confidence 5778999999998876202478899999999999976 6778899999999999999731 1168999999999998876
Q ss_pred hChhhhccc--HHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc
Q 000941 284 RCPRDISSY--CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP 361 (1215)
Q Consensus 284 ~~~~~~~~~--l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~ 361 (1215)
.....+... .+.+++.+.+.+. +.++.||+++++++..+...++
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~----------------------------------~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQ----------------------------------CPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTT----------------------------------CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 554333221 1223443333221 1125899999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhccc----CC--CcCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000941 362 EMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNV----TK--GQIDNNELNPRWLLKQEVSKIVKSINRQ 434 (1215)
Q Consensus 362 ~~l~~~~~-~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~----~~--~~~~~~~~~~~~~L~~~~p~i~~~l~~~ 434 (1215)
+.+.+++. .+++.++..+++.++.||..++..+..+.+..... .. ....+........+..+++.+++.+.+.
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 88877888 88888888888999999999999998888753000 00 0000000011113445667788888777
Q ss_pred hcc-------cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchh
Q 000941 435 LRE-------KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP 507 (1215)
Q Consensus 435 L~~-------~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 507 (1215)
+.+ .++.+|.++..+|..++...+. ..++.++|.+...+++.+ ..+|..++.+++.+.+++.+..+.+
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~--~~~r~aal~~l~~l~~~~~~~~~~~ 404 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD--WRYRDAAVMAFGCILEGPEPSQLKP 404 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 753 2457899999999999998763 567788899988888654 7899999999999998776667888
Q ss_pred hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhh
Q 000941 508 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 569 (1215)
Q Consensus 508 ~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 569 (1215)
+++.++|.+...++|+.++|+..|+.+++.++..+++. -...+|++.+++.++..|+
T Consensus 405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~-----~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG-----CCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc-----cccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999887542 0125789999998887653
No 17
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.85 E-value=9.5e-18 Score=215.07 Aligned_cols=717 Identities=10% Similarity=0.108 Sum_probs=434.2
Q ss_pred CcchhhhhHHHHHHHhccccCCCChH----HHHHHHHHHHHhccC-----cccchhHHHHHHHHHHhhccChhhHHHHHH
Q 000941 17 DKDFRYMATSDLLNELNKESFKADAD----LEVKLSNIVVQQLDD-----VAGDVSGLAVKCLAPLVKKVSEPRVVEMTD 87 (1215)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~----~~~~i~~~ll~~L~D-----~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~ 87 (1215)
++.+||.|+.-|.+.++ .++++ ....+.+.++..+.. ..+-||+....++..++.+.-+..|+.+++
T Consensus 56 ~~~vr~fa~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~ 131 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFA 131 (980)
T ss_dssp CHHHHHHHHHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHH
T ss_pred CHHHHHHHHHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHH
Confidence 78899999999999887 45555 566666666666652 346799999999999998877789999999
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHH---hccCc-----hh---h-----HH----HHHHhHhHHHHhhhhc--cCCChhH
Q 000941 88 KLCIKLLNGKDQHRDIASIALKTII---AEVTT-----SS---L-----AQ----SIHTSLTPQLTKGITL--KDMNTEI 145 (1215)
Q Consensus 88 ~L~~~~~~~~~~~r~~a~~aL~~~i---~~~~~-----~~---~-----~~----~~~~~l~p~L~~~l~~--~~~~~~v 145 (1215)
.|+..+.+++. +......|+.+- +++.. .. . .. +-++.+.+..++.+.. .+.++.+
T Consensus 132 ~l~~~~~~~~~--~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l 209 (980)
T 3ibv_A 132 SLQGVIAASSQ--SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGT 209 (980)
T ss_dssp HHHHHHHHHCC--HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCCh--hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHH
Confidence 99998865432 122233444333 55421 00 0 00 1122234444444432 0124667
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHH-----HHHHhhc
Q 000941 146 RCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIE-----VVRNLRS 219 (1215)
Q Consensus 146 ~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~-----ll~~l~~ 219 (1215)
+..++++++..+.-....+. ..+.+++.++..+.+ +.+|..|+.||..++....+. ....++.. ++..+..
T Consensus 210 ~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 210 VGLCLQVYAQWVSWININLI-VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp HHHHHHHHHHHTTTSCHHHH-HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcCHHhh-hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhc
Confidence 77788888777663332221 126788888888875 689999999999888654332 11122222 1222221
Q ss_pred CCCChHHHHHHHHHHHHHHhh------hh--------hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh-
Q 000941 220 KGAKPEMIRTNIQMVGALSRA------VG--------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR- 284 (1215)
Q Consensus 220 ~~~~~~~~~~~i~~l~~l~~~------~~--------~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~- 284 (1215)
...+.+..+.....+..++.. .+ .+..+++..++|.++.++. .+++++...++..+..++..
T Consensus 287 ~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~---~~~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 287 QSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS---DDYDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT---CSSHHHHHTTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHH
Confidence 122345554444444333322 11 0223678889999999998 46778888888888777653
Q ss_pred --------ChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchh------------------hhc------
Q 000941 285 --------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED------------------ESA------ 332 (1215)
Q Consensus 285 --------~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~------------------~~~------ 332 (1215)
.+..++|+++++++.+.+-++|++.+..++|+|.|+ +++|.+. .-+
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed--~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 234677999999999999999987643221111110 1111100 000
Q ss_pred -----CCCCCCCCccHHHHHHHHHHHHHHHhhCchhhH------HHHHHHHHHHHhhh-----cccchhHHHHHHHHHHH
Q 000941 333 -----NEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS------KLYEEACPKLIDRF-----KEREENVKMDVFNTFIE 396 (1215)
Q Consensus 333 -----~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~------~~~~~i~p~Li~~~-----~d~e~~Vr~~~~~~l~~ 396 (1215)
.........+|+.+++|..+++.+.++.+.... ...+.+++.+...+ ++.++.||...+.+++.
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 000011245799999999999999887542110 11222333333222 37789999887766655
Q ss_pred HHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHH--HhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHH
Q 000941 397 LVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR--QLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEK 474 (1215)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~--~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~ 474 (1215)
..+ |... . .+++|.+++.+.. .+.+++.++|..|+.+|..+++..+..+.+|++.++..+..
T Consensus 522 ys~-------~~~~----~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 522 YAS-------FFDY----E-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp TGG-------GGGT----C-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred HHH-------HHhc----C-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 433 3211 1 2467888998888 88888889999999999999999988888999999888887
Q ss_pred hhcCCCCc---c----------------hhHHHHHHHHHHHhccCC--CCcchhhhhhhHHHHHHHhc----CC----ch
Q 000941 475 SLNDKSST---S----------------NLKIEALTFTRLVLSSHS--PPVFHPYIKALSSPVLAAVG----ER----YY 525 (1215)
Q Consensus 475 ~l~d~~~~---~----------------~~~~~al~~l~~l~~~~~--~~~~~~~l~~l~p~l~~~l~----d~----~~ 525 (1215)
.+.-+..+ . +-+..-+..++.++...+ ++.-..++..+++++...++ .. ..
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 77632110 0 012334566677765533 22333478888888776653 11 11
Q ss_pred H-HHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhH
Q 000941 526 K-VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACL 604 (1215)
Q Consensus 526 ~-v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l 604 (1215)
. .....+.+++.+.+.+..... ....+...+.+.++.++..+..-..+..||+++..++..++..+|..+.|+++.++
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~-~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGS-EEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC--CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccC-CCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 1 223556677888877654311 11114556778888888877755567899999999999999999998999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH----HHHHHH---------hhhHHHHHHHHHHHHHHH
Q 000941 605 PVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL----TAFLRK---------ANRALRQATLGTMNSLVV 671 (1215)
Q Consensus 605 ~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L----~~~L~~---------~~~~lr~~al~~L~~l~~ 671 (1215)
..++...+... -...++.++.++.. .+.++.+++..+++.+ ...|.. ..+.+|++-+..+..++.
T Consensus 745 ~~ll~~~~~~e-~~~fL~l~~qli~~-f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~ 822 (980)
T 3ibv_A 745 SILLNSIDMNE-LVDVLSFISQLIHI-YKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLN 822 (980)
T ss_dssp HHHHHHCCTTT-HHHHHHHHHHHHHH-TTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99885543222 23467888887732 2334455555444443 333332 235588899999999887
Q ss_pred HhCCC--CC---cchHHHHHHHhhhhcC-CCChhhHHHHHHHHHHHhhccc---CCCchhhhhhhhhHHHHHHHhhhccc
Q 000941 672 AYGDK--IG---ASAYEVIIVELSTLIS-DSDLHMTALALELCCTLMADKR---SSPNVGLAVRNKVLPQALALIKSSLL 742 (1215)
Q Consensus 672 ~~~~~--~~---~~~~~~~l~~l~~~l~-~~d~~~~~~al~~l~~l~~~~~---~~p~~~~~~~~~~l~~l~~ll~s~~l 742 (1215)
+.-.. ++ ...++.++..+...-. -+|......++.++..+++... ..|....-+.+ ++|..+.+..+|..
T Consensus 823 ~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f 901 (980)
T 3ibv_A 823 KGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNF 901 (980)
T ss_dssp TTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC---
T ss_pred CCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCC
Confidence 55333 22 2346777877765543 3789999999999999998621 02223333455 78877777655531
Q ss_pred ---chh---hhHHHHHHHHHHHhhcCCChHH
Q 000941 743 ---QGQ---ALVALQSFFAALVYSANTSFDT 767 (1215)
Q Consensus 743 ---~~~---~l~~l~~~~~~l~~~~~~~~~~ 767 (1215)
+++ .+..+..+.+.+....|..+-.
T Consensus 902 ~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~ 932 (980)
T 3ibv_A 902 NTRDGQSLVVLGELAGLQKIILEKLGDIYKS 932 (980)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 122 2233445555555444333333
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.84 E-value=3.9e-16 Score=204.82 Aligned_cols=675 Identities=10% Similarity=0.092 Sum_probs=399.0
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhh----ccChh
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVK----KVSEP 80 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~----~~~~~ 80 (1215)
+..+++.+.++|++.|..|..-|.+ +++ +++.-. .++..|. +++.+||..|...|...+. .++++
T Consensus 9 l~~~l~~~~~~d~~~r~~A~~~L~~-~~~-----~p~~w~----~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 78 (971)
T 2x1g_F 9 LEEAVVSFYRSNSQNQAITHEWLTD-AEA-----SPQAWQ----FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPE 78 (971)
T ss_dssp --CTHHHHHTSTTTC----CHHHHH-TTT-----STHHHH----HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-HHc-----CHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHH
Confidence 4455666778999999999877743 332 232222 2333343 5678999999999998875 36666
Q ss_pred hHHHHHHHHHHHhcC---CCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccC----CChhHHHHHHHHH
Q 000941 81 RVVEMTDKLCIKLLN---GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----MNTEIRCECLDIL 153 (1215)
Q Consensus 81 ~~~~lv~~L~~~~~~---~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~----~~~~v~~~al~~L 153 (1215)
....+-..|++.+.+ +...+|.-.+.+|..++...-+ -+..+++.+++.++.+. .+......++.+|
T Consensus 79 ~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p------~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL 152 (971)
T 2x1g_F 79 NREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG------EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVL 152 (971)
T ss_dssp GHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC------C------HHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc------cccHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 666665666655543 2345677777777777653221 25667777877765420 0245677788888
Q ss_pred HHHHHHhh------------hhhhhhHHHHHHHHhhhhcCC-h-------HHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Q 000941 154 CDVLHKFG------------NLMSNDHERLLSALLPQLSAN-Q-------ASVRKKSVSCIASLASS--LSDDLLAKATI 211 (1215)
Q Consensus 154 ~~l~~~~g------------~~l~~~~~~ll~~ll~~l~~~-~-------~~vrk~a~~~l~~l~~~--~~~~~~~~l~~ 211 (1215)
..+.+... ..+..+.+.+++.+...+.+. + ..+++.++.|+..+..+ ++......+++
T Consensus 153 ~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~ 232 (971)
T 2x1g_F 153 TAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITA 232 (971)
T ss_dssp HHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHH
T ss_pred HHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHH
Confidence 87765321 223345566666665555421 1 27999999999988873 45444455666
Q ss_pred HHHHHhh----------cC----CCChHHHHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcc---c-CCCc---HH
Q 000941 212 EVVRNLR----------SK----GAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTS---A-SEND---EE 269 (1215)
Q Consensus 212 ~ll~~l~----------~~----~~~~~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~---~-~~~d---~e 269 (1215)
.++. +. ++ ...++.++.++.++..+..... ..+.+++..++|.+++.... . .++| ++
T Consensus 233 ~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 233 VLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 6666 41 00 0124678899999999987422 33445666666666543211 0 1233 35
Q ss_pred HHHHHHHHHHHHHHhChhhhc-----------ccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCC
Q 000941 270 LREYSLQALESFLLRCPRDIS-----------SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1215)
Q Consensus 270 lre~al~~l~~l~~~~~~~~~-----------~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd 338 (1215)
......+.+..+....+..+. +++..+++.++.+..+ |.+..+ +
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~-~~~~~~------------------------~ 366 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDK-PGIYPV------------------------E 366 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-SSCTTT------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcC-CCCCCc------------------------c
Confidence 555566777777766665443 5677788888776643 211100 0
Q ss_pred CCccHHHHHHHHHHHHHHHhhC------------chhhHHHHHHHHHHHHhhhcccc---------------hhHHHHHH
Q 000941 339 EDASWKVRRAAAKCLAALIVSR------------PEMLSKLYEEACPKLIDRFKERE---------------ENVKMDVF 391 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~------------~~~l~~~~~~i~p~Li~~~~d~e---------------~~Vr~~~~ 391 (1215)
+ .|+..+...+..+.... .+.+.+++..+++.++.++.-++ .+.|..+.
T Consensus 367 ~----~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 367 E----SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp C----TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred h----hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence 1 23444544444443311 13345677777777776652111 13455555
Q ss_pred HHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc-----cChhhHHHHHHHHHHHHHhCchhhhhhhh
Q 000941 392 NTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE-----KSIKTKVGAFSVLRELVVVLPDCLADHIG 466 (1215)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~-----~~~~~r~~~~~~l~~L~~~~~~~l~~~~~ 466 (1215)
.++..+....+ ...++.+++.+...+.. .+|+.+++++.+++.+++.......++++
T Consensus 443 ~~l~~~~~~~~------------------~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~ 504 (971)
T 2x1g_F 443 DTFMYCYDVLN------------------DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP 504 (971)
T ss_dssp HHHHHHHTTCT------------------THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH
T ss_pred HHHHHHHHHHh------------------HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 55544443211 12344555555554443 57889999999999998876555556888
Q ss_pred hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCC
Q 000941 467 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSV 546 (1215)
Q Consensus 467 ~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~ 546 (1215)
.+++.+ ..+......+.+|..++.+++.+.+..... ..|++.++|.++.++ + ++++..|..++..+++.++.
T Consensus 505 ~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~-- 576 (971)
T 2x1g_F 505 RLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL-- 576 (971)
T ss_dssp HHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH--
Confidence 888843 444411123679999999999887543321 258999999999998 4 68899999999999987643
Q ss_pred cCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CcccchhhhhHHHHHHhhc----c----chhH
Q 000941 547 EGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMG----N----EITR 617 (1215)
Q Consensus 547 ~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~-~~l~~~~~~~l~~L~~~L~----~----e~~r 617 (1215)
.+.||++.++..+.+.+...+.+...+..++.|+|.++...+ +...+++..+++.+...+. + +..+
T Consensus 577 -----~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 651 (971)
T 2x1g_F 577 -----QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAAR 651 (971)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHH
T ss_pred -----hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhH
Confidence 578999999999999988665678999999999999998765 4555677777666665442 2 2123
Q ss_pred HHHH---HHHHHHHc---CCC---------CCchhHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhCCCCCcc
Q 000941 618 LTAV---KAFAVIAA---SPL---------HIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVAYGDKIGAS 680 (1215)
Q Consensus 618 ~~a~---~al~~i~~---s~~---------~~~~~~~l~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~~~~~~~~~ 680 (1215)
...+ ..++.+.. ... ...+.++.+.+++.+...+... +..+...++.+++.++...+..+. +
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-p 730 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQ-P 730 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--C-T
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcc-c
Confidence 3333 33443332 110 1245788899999988888653 557899999999999998888775 4
Q ss_pred hHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch---hhhhhhhhHHHHHHHhhhc----ccchhhh-HHHHH
Q 000941 681 AYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV---GLAVRNKVLPQALALIKSS----LLQGQAL-VALQS 752 (1215)
Q Consensus 681 ~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~---~~~~~~~~l~~l~~ll~s~----~l~~~~l-~~l~~ 752 (1215)
+++.+++.+...+.... + ..++.+++.++......|.. .......+...++.++.+. ..+.+.+ .+.+.
T Consensus 731 ~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ 807 (971)
T 2x1g_F 731 MLQDLCLFIVASFQTRC-C--APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFG 807 (971)
T ss_dssp HHHHHHHHHHHHCC--C-C--HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHH
Confidence 67888887776665432 2 45788888888742111111 1122333344444444332 1112222 56666
Q ss_pred HHHHHHhhc
Q 000941 753 FFAALVYSA 761 (1215)
Q Consensus 753 ~~~~l~~~~ 761 (1215)
++..+....
T Consensus 808 ll~~~l~~~ 816 (971)
T 2x1g_F 808 CLTQIIKKI 816 (971)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHhC
Confidence 666666544
No 19
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.80 E-value=5.6e-15 Score=192.82 Aligned_cols=596 Identities=9% Similarity=0.083 Sum_probs=371.5
Q ss_pred HHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC--CcchhhHHHHHHHHHHhccCc-----hhhHH
Q 000941 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTT-----SSLAQ 122 (1215)
Q Consensus 50 ~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~--~~~~r~~a~~aL~~~i~~~~~-----~~~~~ 122 (1215)
.++....+|++.+| |.+.|..+- . .+..+.. |+..+.+. +.+.|..|+..||+.+..--. ..+..
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~~-~-~p~~~~~----L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQLE-T-QDGFGLT----LLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHHH-T-STTHHHH----HHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHhh-c-CCCHHHH----HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence 44445668888888 888888773 2 2334443 33333332 456899999999998853110 01111
Q ss_pred HHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC
Q 000941 123 SIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 123 ~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
.....|=..+++++.+. +..+|.....+++.++..-.+ ..+|.+++.++..+++++...+..++.++..+.....
T Consensus 81 ~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p---~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFP---DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCc---cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11112222344444433 478898999999888876443 3678999999999988877888999999999887543
Q ss_pred -----HH-------HHHHHHHHHHH-------HhhcCCCChHHHHHHHHHHHHHHh--------hhhhhhccchhhhHHH
Q 000941 203 -----DD-------LLAKATIEVVR-------NLRSKGAKPEMIRTNIQMVGALSR--------AVGYRFGPHLGDTVPV 255 (1215)
Q Consensus 203 -----~~-------~~~~l~~~ll~-------~l~~~~~~~~~~~~~i~~l~~l~~--------~~~~~~~~~l~~iip~ 255 (1215)
++ .+...++.+++ .+.++..+....+.+++++..+++ ..|..+..++...++.
T Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 235 (960)
T 1wa5_C 156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI 235 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 12 13333443333 233332210111223333222222 2244555567777887
Q ss_pred HHHhhccc-----CC-Cc------HHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccc
Q 000941 256 LIDYCTSA-----SE-ND------EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1215)
Q Consensus 256 ll~~~~~~-----~~-~d------~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~ 323 (1215)
+.+.+... .+ ++ +.+|..++.++..++..+++.|.||++.+++.+++.+....+
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~-------------- 301 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISN-------------- 301 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCS--------------
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------
Confidence 77766431 01 11 247788889999999999999999999999999888751100
Q ss_pred cccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCc--hhhH--HHHHHHH-HHHHhhhc-----------cc-----
Q 000941 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EMLS--KLYEEAC-PKLIDRFK-----------ER----- 382 (1215)
Q Consensus 324 ~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~--~~l~--~~~~~i~-p~Li~~~~-----------d~----- 382 (1215)
.+ .+-+++..+...+.++++..+ ..+. +++..++ +.++..+. |+
T Consensus 302 ----------~~-----~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~ 366 (960)
T 1wa5_C 302 ----------QP-----KYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR 366 (960)
T ss_dssp ----------CT-----TSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHH
T ss_pred ----------Cc-----CcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHH
Confidence 00 001678888888887764321 2222 4444444 33333221 11
Q ss_pred -------chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhc------ccChhhHHHHHHH
Q 000941 383 -------EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLR------EKSIKTKVGAFSV 449 (1215)
Q Consensus 383 -------e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~------~~~~~~r~~~~~~ 449 (1215)
.+++|..+..++..+....+ ...+|.+++.+...+. +.+|+.|.+|+.+
T Consensus 367 ~d~e~~d~~s~R~aa~~~L~~l~~~~~------------------~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~a 428 (960)
T 1wa5_C 367 RDLEGSDTDTRRRACTDFLKELKEKNE------------------VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYL 428 (960)
T ss_dssp HHHHC----CHHHHHHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred hccCcccccCcHHHHHHHHHHHHHHcc------------------hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 13567777777777776532 2345666666666665 5678999999999
Q ss_pred HHHHHHhCc--h-hhhh-----hhhhh-hHHHHHhhcCCC-CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHH
Q 000941 450 LRELVVVLP--D-CLAD-----HIGSL-IPGIEKSLNDKS-STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAA 519 (1215)
Q Consensus 450 l~~L~~~~~--~-~l~~-----~~~~l-v~~l~~~l~d~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~ 519 (1215)
++.+++... . .... .+..+ ...+...+.++. ..+.+|..++.+++.+.... -..++..+++.++.+
T Consensus 429 lgaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~~~l~~l~~~ 504 (960)
T 1wa5_C 429 FTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLIELMPILATF 504 (960)
T ss_dssp HHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHHHHHHHHHHH
Confidence 999986421 0 1111 22222 223344455542 13678999999999987643 134899999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHhccCC---CcC-CCCCChhcHHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHhc
Q 000941 520 VGERYYKVTAEALRVCGELVRVLRPS---VEG-LGFDFKPYVQPIYNAIMSRLTNQD---QDQEVKECAISCMGLVISTF 592 (1215)
Q Consensus 520 l~d~~~~v~~~al~~l~~l~~~~~~~---~~~-~~~~~~~~l~~l~~~l~~~l~~~d---~~~~Vr~~Ai~~lg~l~~~~ 592 (1215)
+.|+...|+..|..++..+++...+. ... ....+.||+..+++.++..+.... .+....+.+..|++.++...
T Consensus 505 L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 505 LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 99988899999999999998753210 000 134588999999999999886431 01113478899999999999
Q ss_pred cCcccchhhhhHHHHHHhhcc----c---hhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000941 593 GDNLGAELPACLPVLVDRMGN----E---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1215)
Q Consensus 593 ~~~l~~~~~~~l~~L~~~L~~----e---~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1215)
++.+.|+...+++.+...+.. + ..+..++.+++.++....+..+.++.+.++|.+...+..........++..
T Consensus 585 ~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i 664 (960)
T 1wa5_C 585 EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664 (960)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 999999999999888876532 2 234457888888885532345678888999999888876656677888899
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHhh--hhcCCCChhhHHHHHHHHHHHhh
Q 000941 666 MNSLVVAYGDKIGASAYEVIIVELS--TLISDSDLHMTALALELCCTLMA 713 (1215)
Q Consensus 666 L~~l~~~~~~~~~~~~~~~~l~~l~--~~l~~~d~~~~~~al~~l~~l~~ 713 (1215)
+..++... ..+++ ++..+++.+. ..+.... ........+..++.
T Consensus 665 ~~~l~~~~-~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~ 710 (960)
T 1wa5_C 665 IAFVVEQS-ATIPE-SIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIK 710 (960)
T ss_dssp HHHHHHHC-SSCCT-TTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCCH-HHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHH
Confidence 99888776 44543 3444555554 4443322 34455555655544
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.79 E-value=3.7e-14 Score=186.17 Aligned_cols=671 Identities=13% Similarity=0.149 Sum_probs=405.5
Q ss_pred HHHHHHHHH-hcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHhh----cc
Q 000941 4 LQMAAILEK-ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVK----KV 77 (1215)
Q Consensus 4 ~~l~~ll~~-~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-~D~~~~Vq~~A~~~l~~l~~----~~ 77 (1215)
..+..+++. ..++|++.|..|..-|.+ +++. ++. ...++..| ++++.+||..|...|-..+. .+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~-~~~~-----p~~----~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQ-AQVS-----PQA----WHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHS-----TTH----HHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HhcC-----HHH----HHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 456677777 567899999999888854 4331 111 12223333 35678999999999998875 35
Q ss_pred ChhhHHHHHHHHHHHhcC---CCcchhhHHHHHHHHHHhc-cCchhhHHHHHHhHhHHHHhhhhccC---CChhHHHHHH
Q 000941 78 SEPRVVEMTDKLCIKLLN---GKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKD---MNTEIRCECL 150 (1215)
Q Consensus 78 ~~~~~~~lv~~L~~~~~~---~~~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~---~~~~v~~~al 150 (1215)
+++....+-..|++.+.+ +...+|.-.+.++..++.. .|. -+..+++.|++.++... ++......++
T Consensus 94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~------~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l 167 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD------AWPCAVADMVRLFQAEDSPVDGQGRCLALL 167 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT------TSTTHHHHHHHHHCC------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc------ccchHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 666666666666666543 2345677677777766642 222 15667788887775410 1345677788
Q ss_pred HHHHHHHHHh-------------hhhhhhhHHHHHHHHhhhhcCChH--HHHHHHHHHHHHHHhhcCHHH--HHHHHHHH
Q 000941 151 DILCDVLHKF-------------GNLMSNDHERLLSALLPQLSANQA--SVRKKSVSCIASLASSLSDDL--LAKATIEV 213 (1215)
Q Consensus 151 ~~L~~l~~~~-------------g~~l~~~~~~ll~~ll~~l~~~~~--~vrk~a~~~l~~l~~~~~~~~--~~~l~~~l 213 (1215)
.+|..+.+.. ...+..+.+.+++.+...+.+... .+++.++.|+..... .+... ...+++.+
T Consensus 168 ~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l 246 (963)
T 2x19_B 168 ELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHH
T ss_pred HHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHH
Confidence 8888777532 223445677787777777765432 488999999977665 33222 25677777
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhhh-hhhhccchhhhHHHHHHhhc----ccCCCcHHHHHHHHHHHHHHHHhChhh
Q 000941 214 VRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCT----SASENDEELREYSLQALESFLLRCPRD 288 (1215)
Q Consensus 214 l~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~----~~~~~d~elre~al~~l~~l~~~~~~~ 288 (1215)
++.+.+ ++.+..++.++..++..- +..+.+++..+++.++.... .-..+|.+......+.+..+....+..
T Consensus 247 ~~~l~~----~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~ 322 (963)
T 2x19_B 247 FAALQD----SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRA 322 (963)
T ss_dssp HHHTTS----TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC----chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 777643 257889999999998742 23344566666666554311 000233444444446666666555544
Q ss_pred hc------ccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh---
Q 000941 289 IS------SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS--- 359 (1215)
Q Consensus 289 ~~------~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~--- 359 (1215)
+. +++..+++.++++..+...|..++ .++..+...+..++..
T Consensus 323 l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-----------------------------~v~~~~l~fw~~l~~~~~~ 373 (963)
T 2x19_B 323 LLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE-----------------------------TTSSLTLTFWYTLQDDILS 373 (963)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTC-----------------------------GGGGGGHHHHHHHHHHHTT
T ss_pred HHcCccchHHHHHHHHHHHHHHcCCCCCCchh-----------------------------hhhhhhHHHHHHHHHHHHh
Confidence 33 566777777777654211111100 0111222222222221
Q ss_pred --------CchhhHHHHHHHHHHHHhhhcccch---------------hHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh
Q 000941 360 --------RPEMLSKLYEEACPKLIDRFKEREE---------------NVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1215)
Q Consensus 360 --------~~~~l~~~~~~i~p~Li~~~~d~e~---------------~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 416 (1215)
..+.+.+++..+++.++.++..+++ +.|..+..++..+....+
T Consensus 374 ~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~-------------- 439 (963)
T 2x19_B 374 FEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG-------------- 439 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 1123445666677777766532111 123444444444433221
Q ss_pred hhHHHHHHHHHHHHHHHHh----cccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHH
Q 000941 417 RWLLKQEVSKIVKSINRQL----REKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 492 (1215)
Q Consensus 417 ~~~L~~~~p~i~~~l~~~L----~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~ 492 (1215)
...++.+++.+...+ .+.+|+.+++++.+++.+++.......++++.+++.+.. +.+. .+.+|..++.+
T Consensus 440 ----~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~--~~~vr~~~~~~ 512 (963)
T 2x19_B 440 ----AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISIS--NVQLADTVMFT 512 (963)
T ss_dssp ----HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCC--SHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCC--cHHHHHHHHHH
Confidence 234566666666666 556889999999999999987655445677777774433 3332 36689999999
Q ss_pred HHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccC
Q 000941 493 TRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD 572 (1215)
Q Consensus 493 l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d 572 (1215)
++.+.+.... -.+|++.+++.++..+++ ++++..|..++..+++.++ ..+.||++.+++.+...+...+
T Consensus 513 l~~~~~~l~~--~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~-------~~l~p~~~~il~~l~~~l~~~~ 581 (963)
T 2x19_B 513 IGALSEWLAD--HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK-------YDLPPYAANIVAVSQDVLMKQI 581 (963)
T ss_dssp HHHTHHHHHH--CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG-------GGCTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHhccCC
Confidence 9887653221 125899999999999976 6899999999999998763 3588999999999998887555
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-CcccchhhhhHHHHHHhhc-------cchhHH---HHHHHHHHHHc--C-CC------
Q 000941 573 QDQEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMG-------NEITRL---TAVKAFAVIAA--S-PL------ 632 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~l~~~~~-~~l~~~~~~~l~~L~~~L~-------~e~~r~---~a~~al~~i~~--s-~~------ 632 (1215)
.+.+.|..++.++|.++...+ +...+++..+++.+...++ ++..+. ..+.+++.++. + ..
T Consensus 582 ~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~ 661 (963)
T 2x19_B 582 HKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHE 661 (963)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC----
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 578899999999999998776 5666788888887776653 222232 44566665552 1 11
Q ss_pred ------------CCchhHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCC-CC
Q 000941 633 ------------HIDLTCVLEHVIAELTAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD-SD 697 (1215)
Q Consensus 633 ------------~~~~~~~l~~~l~~L~~~L~~--~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~d 697 (1215)
+..+.++...+++.+...+.. .+..+...++.++..++...+..+. ++++.++..+...... +.
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~ 740 (963)
T 2x19_B 662 GPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-PMVPQLCEMLGRMYSTIPQ 740 (963)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-GGHHHHHHHHHHHHHHSCC
T ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-ccHHHHHHHHHHHHHcCCc
Confidence 112456788888888887764 2457888899999999988887664 4566666655433221 22
Q ss_pred hhhHHHHHHHHHHHhhcccCCCc---hhhhhhhhhHHHHHHHhhhcccchhh-hHHHHHHHHHHHhhc
Q 000941 698 LHMTALALELCCTLMADKRSSPN---VGLAVRNKVLPQALALIKSSLLQGQA-LVALQSFFAALVYSA 761 (1215)
Q Consensus 698 ~~~~~~al~~l~~l~~~~~~~p~---~~~~~~~~~l~~l~~ll~s~~l~~~~-l~~l~~~~~~l~~~~ 761 (1215)
...+.+++.++......+. ....+...++..++.++.....+.+. ..+.+.++..+....
T Consensus 741 ----~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~ 804 (963)
T 2x19_B 741 ----ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK 804 (963)
T ss_dssp ----HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred ----cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC
Confidence 2355556666551101211 11123334444444444322211122 255666666666544
No 21
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.77 E-value=1.3e-14 Score=185.85 Aligned_cols=672 Identities=11% Similarity=0.107 Sum_probs=409.3
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc----Cc-----ccchhHHHHHHHHHHhhcc
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD----DV-----AGDVSGLAVKCLAPLVKKV 77 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~----D~-----~~~Vq~~A~~~l~~l~~~~ 77 (1215)
..+|. .+.++.+||.|+.-|.+.+.+.|..++++....+.+.++..+. +| .+-|++.-..+++.++.+.
T Consensus 54 ~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~ 131 (1023)
T 4hat_C 54 DQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE 131 (1023)
T ss_dssp HHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh
Confidence 34554 3567899999999999999999988888777777777776663 33 3567888999999999877
Q ss_pred ChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccC---ch--------hh---HHHHHHhHhHHHHhhhhccCCCh
Q 000941 78 SEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT---TS--------SL---AQSIHTSLTPQLTKGITLKDMNT 143 (1215)
Q Consensus 78 ~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~---~~--------~~---~~~~~~~l~p~L~~~l~~~~~~~ 143 (1215)
-+..|+.+++.|+..+.++ +...+.....|+.+.+++. .. .+ .......+++.+.+.+++.. +.
T Consensus 132 ~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-~~ 209 (1023)
T 4hat_C 132 WPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-SS 209 (1023)
T ss_dssp TTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SC
T ss_pred ChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CH
Confidence 6678999999999988543 3446667777887777632 11 01 11122334444444554433 56
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh-hhhcCChHHHHHHHHHHHHHHHhh-c-CH-----HHHHHHHHHHHH
Q 000941 144 EIRCECLDILCDVLHKFGNLMSNDHERLLSALL-PQLSANQASVRKKSVSCIASLASS-L-SD-----DLLAKATIEVVR 215 (1215)
Q Consensus 144 ~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll-~~l~~~~~~vrk~a~~~l~~l~~~-~-~~-----~~~~~l~~~ll~ 215 (1215)
++...++++++..++-.....- ....+++.++ ..+. .+.+|..|+.||..++.. . ++ +.+..+++.++.
T Consensus 210 ~l~~~~L~~l~s~l~WI~i~~i-~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~ 286 (1023)
T 4hat_C 210 SLIVATLESLLRYLHWIPYRYI-YETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSCTHHH-HSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHh-cchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHH
Confidence 6777788887776653322110 1134667677 6664 456999999999999863 2 22 122223333322
Q ss_pred Hh---------------hcCC-CChHHHHHHHHHHHHHHhhhhhhhc--cchhhh----HHHHHHhhcccCCCcHHHHHH
Q 000941 216 NL---------------RSKG-AKPEMIRTNIQMVGALSRAVGYRFG--PHLGDT----VPVLIDYCTSASENDEELREY 273 (1215)
Q Consensus 216 ~l---------------~~~~-~~~~~~~~~i~~l~~l~~~~~~~~~--~~l~~i----ip~ll~~~~~~~~~d~elre~ 273 (1215)
.+ ...+ .+.+..+....++.++++.....+. |....+ ...++.... .+|.++-+.
T Consensus 287 ~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~---~~d~ei~~~ 363 (1023)
T 4hat_C 287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK---IEERELFKT 363 (1023)
T ss_dssp HHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTT---SSCHHHHHH
T ss_pred HHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhC---CCcHHHHHH
Confidence 22 1111 1123344455566666655433332 233333 335555444 467888888
Q ss_pred HHHHHHHHHHh------ChhhhcccHHHHHHHHHHHhccCCCCC---CCCCCC-cccc-cccccchh----h--------
Q 000941 274 SLQALESFLLR------CPRDISSYCDEILHLTLEYLSYDPNFT---DNMEED-SDDE-AYEEEEED----E-------- 330 (1215)
Q Consensus 274 al~~l~~l~~~------~~~~~~~~l~~ii~~~l~~l~~dpn~~---~~~d~d-~~~~-~~~~~~d~----~-------- 330 (1215)
++..+..++.. +...++|++.++++.+++-+.|.+... +++++- .+-+ +.|+.+.+ +
T Consensus 364 tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l 443 (1023)
T 4hat_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1023)
T ss_dssp HHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhcc
Confidence 88888888763 233578899999999999998866321 111110 0000 00100000 0
Q ss_pred --hc------CCC---CCCCCccHHHHHHHHHHHHHHHhhCc-hhhHHHHHHHHHHHHhhhc-----ccchhHHHHHHHH
Q 000941 331 --SA------NEY---TDDEDASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACPKLIDRFK-----EREENVKMDVFNT 393 (1215)
Q Consensus 331 --~~------~~~---~dd~d~swkvR~~Aa~~L~~li~~~~-~~l~~~~~~i~p~Li~~~~-----d~e~~Vr~~~~~~ 393 (1215)
++ +.. .+..+.+|+.|++++-+++++..+.. +...++...++|.|+.... |....||..++.+
T Consensus 444 ~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~ 523 (1023)
T 4hat_C 444 NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYV 523 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHH
Confidence 00 000 01223579999999999999998754 4466788888888887653 2334455556566
Q ss_pred HHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhh--------hhhh
Q 000941 394 FIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL--------ADHI 465 (1215)
Q Consensus 394 l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l--------~~~~ 465 (1215)
++...+... .-.++++++++.+.+.+.+.+++++.+|+.+|..+++.....+ .+|+
T Consensus 524 lGry~~wl~----------------~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~ 587 (1023)
T 4hat_C 524 VGQYPRFLK----------------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1023)
T ss_dssp HHTCHHHHH----------------HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred HHHHHHHHh----------------ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH
Confidence 655544331 1135689999999999988888899999999999999776655 4689
Q ss_pred hhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcch-hhhhhhHHHHHHHhcC--------Cc-------hHHHH
Q 000941 466 GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH-PYIKALSSPVLAAVGE--------RY-------YKVTA 529 (1215)
Q Consensus 466 ~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~-~~l~~l~p~l~~~l~d--------~~-------~~v~~ 529 (1215)
+.++..+..++.+- +..-+...+..++.+++..+..... .++..+++.+....+. +. -+...
T Consensus 588 ~~il~~l~~~~~~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~ 665 (1023)
T 4hat_C 588 QTIIRDIQKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIA 665 (1023)
T ss_dssp HHHHHTHHHHHTTS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHH
Confidence 99988888877632 2455667888899999887644423 3788888777755431 11 13334
Q ss_pred HHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc----------CC-----CH------HHHHHHHHHHHHH
Q 000941 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ----------DQ-----DQ------EVKECAISCMGLV 588 (1215)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~----------d~-----~~------~Vr~~Ai~~lg~l 588 (1215)
.-+++...++..+++ .|.|++..+|+.+++..+.- +. .+ .||...+.-+...
T Consensus 666 ~il~~~~~v~~~lg~-------~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~ 738 (1023)
T 4hat_C 666 NIIKTNVAVCTSMGA-------DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETY 738 (1023)
T ss_dssp HHHHHHHHHHHHHGG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777644 68999999999887654311 00 01 2223333333333
Q ss_pred HHhccC--c-ccchhhhhHHHHHHhhc-c-chhHHH-HHHHHHHHHcCCCCCchhHHHHHHHHHH----HHHHHH---hh
Q 000941 589 ISTFGD--N-LGAELPACLPVLVDRMG-N-EITRLT-AVKAFAVIAASPLHIDLTCVLEHVIAEL----TAFLRK---AN 655 (1215)
Q Consensus 589 ~~~~~~--~-l~~~~~~~l~~L~~~L~-~-e~~r~~-a~~al~~i~~s~~~~~~~~~l~~~l~~L----~~~L~~---~~ 655 (1215)
+.+..+ . ....++.++..++.-.+ + +..|.. .+.....++.. .+..+.+.++.++..+ ...+.+ ++
T Consensus 739 i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~-~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~ 817 (1023)
T 4hat_C 739 ISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEK-VGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1023)
T ss_dssp HHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHH-HGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 333321 0 11234444444443222 2 223433 23333444321 1222355555555554 334443 56
Q ss_pred hHHHHHHHHHHHHHHHHhCCC---CCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 656 RALRQATLGTMNSLVVAYGDK---IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
+..|..=+..+..+..++... +++..+..++..+.-.++.+...+...++.++..++..
T Consensus 818 Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~ 879 (1023)
T 4hat_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 889999999999998887653 45556777888887778888888888888888777653
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=2.8e-15 Score=184.04 Aligned_cols=478 Identities=12% Similarity=0.141 Sum_probs=320.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
+....+++-+.+.|..+|.|+-.-+...... +++...-+++.+.+.|+|+|+.||..|+++++.+. .++.++
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~ 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITE 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHH
Confidence 3445667778888888997776666555432 33444556788889999999999999999999875 456778
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
.+++.+...+.++++.+|..|+.|+..++...|. .... ..++|.+.+.+.+. ++.|+..|+.+|+++....+..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~--~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVED--QGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHH--HHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hccc--ccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCc
Confidence 8889999988888899999999999999875553 2111 35778888888765 6899999999999998765533
Q ss_pred -hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-
Q 000941 164 -MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV- 241 (1215)
Q Consensus 164 -l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~- 241 (1215)
.....+..+..++..+.+.++-.+...+.+++.+... ++.....+++.+...+++.+. .++..++.++..+....
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~--~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSICERVTPRLSHANS--AVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTT--HHHHHHHHHHHHSCCSCC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHhhccC
Confidence 1122334445555555555565666666666555432 233456677777777776654 67878888888776432
Q ss_pred --hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcc
Q 000941 242 --GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSD 319 (1215)
Q Consensus 242 --~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~ 319 (1215)
+..+...++.+.+.++..+. .+.++|-.++.++..++...|+.+.+++..+ +.
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~~----~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~-------~~-------------- 326 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLLS----GEPEVQYVALRNINLIVQKRPEILKQEIKVF-------FV-------------- 326 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHTT----SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT-------SC--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHhChHHHHHHHHhh-------ee--------------
Confidence 22333344566676665442 5789999999999999988886555443211 00
Q ss_pred cccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 000941 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVR 399 (1215)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~ 399 (1215)
..+|. |.||+.|..++..+.... . .+.+++.|...+++.++.+|..++++++.+..
T Consensus 327 -----------------~~~d~-~~Ir~~al~~L~~l~~~~--n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 327 -----------------KYNDP-IYVKLEKLDIMIRLASQA--N----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp -----------------CTTSC-HHHHHHHHHHHHHTCCSS--T----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred -----------------ccCCh-HHHHHHHHHHHHHHCChh--h----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 00112 799999999888765432 2 23456666666788889999999998888765
Q ss_pred HhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCC
Q 000941 400 QTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 479 (1215)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~ 479 (1215)
.. + .....+++.+.+.+.+....++..++..+..++...|.. ...+++.+...+.+.
T Consensus 383 ~~--------------~-----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~~ 439 (591)
T 2vgl_B 383 KV--------------E-----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDSL 439 (591)
T ss_dssp TC--------------H-----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTTC
T ss_pred hC--------------h-----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHhc
Confidence 32 1 223456667777777777778888888899988776543 234556666666543
Q ss_pred CCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHH
Q 000941 480 SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1215)
Q Consensus 480 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1215)
. .+.++..++.++|.+.... +..+.++..+...+.+....++..++.++..+.... | . ....
T Consensus 440 ~-~~~~~~~~~wilGey~~~~------~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~-p------~----~~~~ 501 (591)
T 2vgl_B 440 D-EPDARAAMIWIVGEYAERI------DNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK-P------S----ETQE 501 (591)
T ss_dssp C-SHHHHHHHHHHHHTTCTTC------TTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC-C------S----TTHH
T ss_pred c-CHHHHHHHHHHHHcccccc------cCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC-c------h----HHHH
Confidence 2 3566766666666653321 113455555555555667788988888887776432 1 1 1234
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000941 560 IYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 560 l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
.+..+++.......+.+||++|...++-+
T Consensus 502 ~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 502 LVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 55555555443335789999999887543
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.71 E-value=4.4e-15 Score=177.23 Aligned_cols=403 Identities=11% Similarity=0.099 Sum_probs=275.3
Q ss_pred hhHHHH---HHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH--hHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 80 PRVVEM---TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT--SLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 80 ~~~~~l---v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~--~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
.+|.+. ++.|+..+.++++..|..+..+|+.++.....+.. ..+.+ .++|.|++.+.+.. ++.++..++.+|.
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLT 90 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHH
Confidence 345444 66677766666666777777777776542111112 22333 58899999888753 5899999999999
Q ss_pred HHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHH
Q 000941 155 DVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRT 229 (1215)
Q Consensus 155 ~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~ 229 (1215)
.+.......... .....++.++..+.++++.+|..|+.+|+.++...+.. .+ ...++.++..+.+... ..+|+.
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-LTMTRN 169 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-HHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-HHHHHH
Confidence 987633222111 12457888889999999999999999999999754322 22 2467888888875332 478999
Q ss_pred HHHHHHHHHhhh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccC
Q 000941 230 NIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYD 307 (1215)
Q Consensus 230 ~i~~l~~l~~~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~d 307 (1215)
++.+++.+++.. +..-...+..++|.+++.+. ++|+++|..+.+++..++...+....... ..+++.+++++. +
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~ 245 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-H 245 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-C
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-C
Confidence 999999999765 33323455889999999987 56889999999999998876543222221 235666666663 1
Q ss_pred CCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHH-HHHHHHHhhhcccchhH
Q 000941 308 PNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE-EACPKLIDRFKEREENV 386 (1215)
Q Consensus 308 pn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~-~i~p~Li~~~~d~e~~V 386 (1215)
.+|.+|..|+.+|+.+....++....+.. .++|.|+..+++.++.|
T Consensus 246 ---------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 292 (450)
T 2jdq_A 246 ---------------------------------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI 292 (450)
T ss_dssp ---------------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHH
T ss_pred ---------------------------------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHH
Confidence 12799999999999998776654333332 57888888888888999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC-chhhhhh
Q 000941 387 KMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADH 464 (1215)
Q Consensus 387 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~-~~~l~~~ 464 (1215)
|..++.+++.+.... + ......+ ..+++.+.+.+.+.++.+|..++.+++.++... +......
T Consensus 293 r~~a~~~L~~l~~~~--------------~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l 357 (450)
T 2jdq_A 293 KKEACWTISNITAGN--------------R-AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL 357 (450)
T ss_dssp HHHHHHHHHHHTTSC--------------H-HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999988876411 1 1122222 356667777777888899999999999998763 2222222
Q ss_pred h-hhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCC------Ccchhhhhhh-----HHHHHHHhcCCchHHHHHHH
Q 000941 465 I-GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP------PVFHPYIKAL-----SSPVLAAVGERYYKVTAEAL 532 (1215)
Q Consensus 465 ~-~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~------~~~~~~l~~l-----~p~l~~~l~d~~~~v~~~al 532 (1215)
+ ..++|.+...+++.. +.++..++.++..++..... ....+|...+ ++.+.....++++.++..|+
T Consensus 358 ~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~ 435 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVMD--SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAF 435 (450)
T ss_dssp HHHTCHHHHHHGGGSSC--HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 2 357889999988753 68888999998888764321 1234555555 56666656667778888888
Q ss_pred HHHHHHH
Q 000941 533 RVCGELV 539 (1215)
Q Consensus 533 ~~l~~l~ 539 (1215)
.++..++
T Consensus 436 ~~l~~~~ 442 (450)
T 2jdq_A 436 DLIEHYF 442 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 8888776
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.69 E-value=2.4e-15 Score=179.46 Aligned_cols=399 Identities=14% Similarity=0.124 Sum_probs=281.4
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhcccc-CCCChHHHH-HHHHHHHHhccCc-ccchhHHHHHHHHHHhhccChhh-
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEV-KLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEPR- 81 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~-~i~~~ll~~L~D~-~~~Vq~~A~~~l~~l~~~~~~~~- 81 (1215)
+..+++.+++.|+++|..|+..|.+.+.+.. ...+..... .+++.+++.|.++ +++||..|+.+|+.+...-++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6778888999999999999999999876321 111111122 6899999999988 89999999999999986322211
Q ss_pred -H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 82 -V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 82 -~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
+ ...++.|+..+.++++++|..++.+|..+....+ .....+. ..++|.|+..+.+.. +..++..++.+|+.+.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST--MCRDYVLDCNILPPLLQLFSKQN-RLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHHTTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Confidence 1 3578888888888888899999999999886543 1222222 357889998888532 6899999999999998
Q ss_pred HHhhhhh-hhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---H-HHHHHHHHHHhhcCCCChHHHHHHHH
Q 000941 158 HKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---L-AKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1215)
Q Consensus 158 ~~~g~~l-~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~-~~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1215)
...++.. ......+++.++..+.++++.+|..++.+|+.++...++.. . ..+++.++..+.+++ .+++..++.
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND--YKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--hhHHHHHHH
Confidence 6542211 12235667777888888888999999999999987543321 1 247788888887654 478889999
Q ss_pred HHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCC
Q 000941 233 MVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNF 310 (1215)
Q Consensus 233 ~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~ 310 (1215)
+++.++...+......+ ..++|.+++.+. +.++.+|..++.++..++..++.....++ ..+++.++..++.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---- 329 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLS---SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---- 329 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH----
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 99999886553322222 258889988887 46789999999999999887776555444 3667777777641
Q ss_pred CCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHHH-HHHHHHHhhhcccchhHHH
Q 000941 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYE-EACPKLIDRFKEREENVKM 388 (1215)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~~-~i~p~Li~~~~d~e~~Vr~ 388 (1215)
.+++||+.|+.+|+.+... .++....+++ .++|.|+..+++.++.||.
T Consensus 330 ------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 379 (450)
T 2jdq_A 330 ------------------------------AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379 (450)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 0148999999999999876 4555554443 5789999999888899999
Q ss_pred HHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHH-----HHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKI-----VKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i-----~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
.++.++..++.......+.. .+. ...+...+ ++.+...+.+++..++..++.++..+.
T Consensus 380 ~a~~aL~~l~~~~~~~~~~~-----~~~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKRN-----GTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-----CSC---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhcc-----ccc---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999999887532100000 000 00112222 344555556666677877877777665
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-12 Score=160.34 Aligned_cols=660 Identities=14% Similarity=0.124 Sum_probs=400.5
Q ss_pred HHHhhhcc-cchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHH-HHHHHHHhcccChhhHHHHHHHHH
Q 000941 374 KLIDRFKE-REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKI-VKSINRQLREKSIKTKVGAFSVLR 451 (1215)
Q Consensus 374 ~Li~~~~d-~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i-~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1215)
.+.+.+++ .++++...+++++..++.... ......+..+ ++.+...+..+++..-.+++.++.
T Consensus 53 ~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~---------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (810)
T 3now_A 53 KVASLTKVEKDQDIYVNMVHLVAALCENSV---------------ERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQ 117 (810)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccH---------------HHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33334455 668899999999999986421 0111111000 134555666677777788888888
Q ss_pred HHHHhCchh-----------h----hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhhhh-hHHH
Q 000941 452 ELVVVLPDC-----------L----ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKA-LSSP 515 (1215)
Q Consensus 452 ~L~~~~~~~-----------l----~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~-l~p~ 515 (1215)
.+...+.+. + ...+..++..+...+.++.-+...|-.+++++..-+..........++.. =+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 197 (810)
T 3now_A 118 TILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCR 197 (810)
T ss_dssp HHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHH
Confidence 887765331 1 23577888888899998877677888888887766543221111112111 1222
Q ss_pred HHHHhc---CC--------chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHH-HHHHHHhhccCCCHHHHHHHHH
Q 000941 516 VLAAVG---ER--------YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY-NAIMSRLTNQDQDQEVKECAIS 583 (1215)
Q Consensus 516 l~~~l~---d~--------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~-~~l~~~l~~~d~~~~Vr~~Ai~ 583 (1215)
++.... +. ....+..+--++..+.+.++... . +.....++ .++-..+.. .+.+-+-.|+.
T Consensus 198 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~ 269 (810)
T 3now_A 198 LLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE-----A-KARFTDQIDEYIKDKLLA--PDMESKVRVTV 269 (810)
T ss_dssp HHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH-----H-HHHHHHHHHHHHHHHHSS--CCHHHHHHHHH
T ss_pred HHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch-----h-HHHHHHHHHHHHHHHhcc--CChHhHHHHHH
Confidence 222221 21 23678888888888887764321 0 12222222 223333432 34555666888
Q ss_pred HHHHHHHhccCcccc-h-hhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHH
Q 000941 584 CMGLVISTFGDNLGA-E-LPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALR 659 (1215)
Q Consensus 584 ~lg~l~~~~~~~l~~-~-~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr 659 (1215)
++..+.....+.-.. + -...++.|+..+++ +..+..|+++++.++..+.. -.-+...-++.|..++.+.+..+|
T Consensus 270 alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~--R~~I~~~gv~~L~~Ll~s~~~~vr 347 (810)
T 3now_A 270 AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK--AKALCEQGVDILKRLYHSKNDGIR 347 (810)
T ss_dssp HHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHH--HHTTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHH--HHHHHHcCcHHHHHHHcCCCHHHH
Confidence 888776533221111 1 23556777766644 45778999999997643211 012223334888888887788899
Q ss_pred HHHHHHHHHHHHHhC-----CCCCcchHHHHHHHhhhhcCCC--ChhhHHHHHHHHHHHhhcccCCCchhhhhh--hhhH
Q 000941 660 QATLGTMNSLVVAYG-----DKIGASAYEVIIVELSTLISDS--DLHMTALALELCCTLMADKRSSPNVGLAVR--NKVL 730 (1215)
Q Consensus 660 ~~al~~L~~l~~~~~-----~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~al~~l~~l~~~~~~~p~~~~~~~--~~~l 730 (1215)
.-|+.+|..+....+ ..+....+..+++.+..++.++ |...+..+.+.|..++.. |+...... ..++
T Consensus 348 ~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~----~~vk~~lv~d~g~I 423 (810)
T 3now_A 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD----AECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS----HHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC----cHHHHHHHHccchH
Confidence 999999999975433 2244445678888888888776 889999999999999863 44433333 4689
Q ss_pred HHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCC--CcchhhhhhhhHHHHHHHHHhhcCCcc
Q 000941 731 PQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQ--SGGVAKQAMYSIAQCVAVLCLAAGDQK 808 (1215)
Q Consensus 731 ~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~--~~~~~~~~~~~~a~~i~~~~~~~~~~~ 808 (1215)
|.++++++++. ....+.....+.+++...... ..++.+.......+. +..--+..-..+.+.+..+..
T Consensus 424 p~LV~LL~s~d--~~i~~~al~~L~NLt~~~d~q--~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve------ 493 (810)
T 3now_A 424 HALMDLARGGN--QSCLYGVVTTFVNLCNAYEKQ--EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN------ 493 (810)
T ss_dssp HHHHHHHHTTC--GGGHHHHHHHHHHHTTCSCCC--CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhCCCC--hHHHHHHHHHHHHHcCCchhh--hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH------
Confidence 99999998753 223345555666666532110 001111110110000 000000000011111222222
Q ss_pred hhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCC---ccchHHHHHHhcCCCchhHhhHHHHHHHhhhhc-Ccc--
Q 000941 809 CSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEEIKSAASYALGNIAVG-NLS-- 882 (1215)
Q Consensus 809 ~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~---~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~-~~~-- 882 (1215)
.+.++.|+..+.+++...+..|..+|+.+....+... .....+.++.++.+.++.+|..|+.||++++.+ ++.
T Consensus 494 -aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 -EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp -TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred -CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 1367778877765544447777788887753321100 124677889999888899999999999999853 322
Q ss_pred -------cchHHHHHHhhcccc--hhHHHHHHHHHHHhhccccchhhhhHHHH-HHHHHHHhhccCCccchhhHHHHHhh
Q 000941 883 -------KFLPFILDQIDNQQK--KQYLLLHSLKEVIVRQSVDKAEFQDSSVE-KILNLLFNHCESEEEGVRNVVAECLG 952 (1215)
Q Consensus 883 -------~~lp~il~~l~~~~~--~~~~~l~alke~i~~~~~~~~~~~~~~~~-~i~~~L~~~~~~~~e~~r~~aae~Lg 952 (1215)
..+|.+++.+..+.. .++-.+.||..+.... ++.-...++ ..|+.|.....++++.+|..|++||+
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~----d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~ 648 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN----ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 257888888875532 2455677777765432 111111111 23445555444566789999999999
Q ss_pred hccccC--------CCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhh--HhHHHHHHhccCCChHHHHHH
Q 000941 953 KIALIE--------PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF--PEISSFLMLIKDQDRHVRRAA 1022 (1215)
Q Consensus 953 ~l~~~~--------~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~--~~i~~~l~~l~D~d~~Vr~~a 1022 (1215)
+|+... ....+|.|.+++.+.+..+|..+.+++..+...........+. ..++.++..|.++|.++|..|
T Consensus 649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A 728 (810)
T 3now_A 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728 (810)
T ss_dssp HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHH
Confidence 999742 2357888889998888899999999999877654443444453 578889999999999999999
Q ss_pred HHHHHHHHhcCcccccchhh-hhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhc
Q 000941 1023 VLALSTFAHNKPNLIKGLLP-ELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSC 1092 (1215)
Q Consensus 1023 ~~~L~~~~~~~p~~i~~~l~-~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~ 1092 (1215)
..++..++...++....... ..+|.|..-++. ..++.-++++.|.+++..+++.-
T Consensus 729 ~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~---------------~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 729 IVIILNMINAGEEIAKKLFETDIMELLSGLGQL---------------PDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCC---------------TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhC---------------cccCcHHHHHHHHHHHHHHHhCC
Confidence 99999988765554322222 277777665432 11245789999999999998764
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.67 E-value=8.6e-14 Score=175.98 Aligned_cols=508 Identities=12% Similarity=0.082 Sum_probs=322.3
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh---
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--- 81 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~--- 81 (1215)
.+..+++.+.+++.++|..|+..+... .+ .......++.|+++|.+++..||..|+.+|+.+...-....
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~-~~------~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ-DD------AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh-hH------HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 467889999999999998887776532 21 13346788999999999999999999999999986322111
Q ss_pred -HHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHH
Q 000941 82 -VVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 82 -~~~lv~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1215)
....++.|+..+.++ +.+.|..++.+|+.+...- .....+. ...+|.|+..+++. ++.++..|+.+|..+..
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~---~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR---EGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLL 263 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH---HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc---hhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC
Confidence 135677777777644 6678888999999865431 1122222 24789999988875 58999999999999988
Q ss_pred Hhhhhhhhh-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000941 159 KFGNLMSND-HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1215)
Q Consensus 159 ~~g~~l~~~-~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1215)
.....-... ....++.++..+.+++..++..++.++..++....+. +. ...++.++..+++.+. ...+..+..+
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~a 342 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRV 342 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 754433222 2457788888898888899999999999887532221 11 2356777777776543 3445567788
Q ss_pred HHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCC
Q 000941 234 VGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTD 312 (1215)
Q Consensus 234 l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~ 312 (1215)
+..++.. +......+ ..++|.++..+. +.+.++++.+..++..++...+.. .....+++.+.+.+..
T Consensus 343 L~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~---~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~------ 410 (780)
T 2z6g_A 343 LKVLSVC-SSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS------ 410 (780)
T ss_dssp HHHHHTS-TTHHHHHHHTTHHHHHGGGTT---CSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTC------
T ss_pred HHHhhcC-hHHHHHHHHhchHHHHHHHHc---CCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcC------
Confidence 8888753 22211111 346888888887 457889999999999998776542 2235677777777641
Q ss_pred CCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhccc-c-hhHHHH
Q 000941 313 NMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER-E-ENVKMD 389 (1215)
Q Consensus 313 ~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~-e-~~Vr~~ 389 (1215)
.+|.||+.|+.+|+.+....++....+. ...++.|++.+.+. + +.||..
T Consensus 411 ----------------------------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~ 462 (780)
T 2z6g_A 411 ----------------------------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462 (780)
T ss_dssp ----------------------------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence 1379999999999999765543333222 24567777777553 2 489999
Q ss_pred HHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhCchhhhhh-h
Q 000941 390 VFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADH-I 465 (1215)
Q Consensus 390 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l~~~L~~~~-~~~r~~~~~~l~~L~~~~~~~l~~~-~ 465 (1215)
++.+++.+..... .....+..+ ...++.+.+.|...+ +.+|..++.+|+.++.. +..-... -
T Consensus 463 Al~aL~nL~~~~~-------------~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~ 528 (780)
T 2z6g_A 463 AICALRHLTSRHQ-------------DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 528 (780)
T ss_dssp HHHHHHHTTSSST-------------THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHH
T ss_pred HHHHHHHHHhcCc-------------hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 8888887742110 000011111 223556666777665 47899999999999842 1111111 1
Q ss_pred hhhhHHHHHhhcCCC--------------------CcchhHHHHHHHHHHHhccCCCCcchhhh--hhhHHHHHHHhcCC
Q 000941 466 GSLIPGIEKSLNDKS--------------------STSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGER 523 (1215)
Q Consensus 466 ~~lv~~l~~~l~d~~--------------------~~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~l~p~l~~~l~d~ 523 (1215)
..++|.+...+.+.. ....++..++.+|+.+... + .....+ ...+|.++..+.+.
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~-~~~~~l~~~~~i~~Lv~lL~~~ 605 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--I-HNRIVIRGLNTIPLFVQLLYSP 605 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--H-HHHHHHHHTCCHHHHHHGGGCS
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--h-hhHHHHHHCCcHHHHHHHHcCC
Confidence 124455555443211 1134566677777777532 1 111111 35688899999998
Q ss_pred chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc
Q 000941 524 YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP--IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1215)
Q Consensus 524 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~--l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~ 593 (1215)
..+++..|..++..++.. ......+.+ .++.+...+. +.+.+||..|..+++.+....+
T Consensus 606 ~~~v~~~a~~aL~~L~~~---------~~~~~~i~~~g~i~~L~~Ll~--~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 606 IENIQRVAAGVLCELAQD---------KEAAEAIEAEGATAPLTELLH--SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp CHHHHHHHHHHHHHHHTS---------HHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHhcC---------HHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCh
Confidence 899999999988887621 012222222 3444555554 5679999999999999887654
No 27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=1.6e-13 Score=168.31 Aligned_cols=437 Identities=11% Similarity=0.147 Sum_probs=280.7
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhh
Q 000941 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGD 251 (1215)
Q Consensus 172 l~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~ 251 (1215)
.+.+...++++++.+|..|+.+++.+. ..++...+++.+.+.+.+++ +.+|+.++.+++.+++..|..+.. ..
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~--~~VRk~A~~al~~i~~~~p~~~~~--~~ 160 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDED--PYVRKTAAVCVAKLHDINAQMVED--QG 160 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSC--HHHHHHHHHHHHHHHHSSCCCHHH--HH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHhhChhhccc--cc
Confidence 345556677777777777777776654 44455666777777776543 367777777777777754432211 35
Q ss_pred hHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh-hcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhh
Q 000941 252 TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1215)
Q Consensus 252 iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~-~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~ 330 (1215)
++|.+.+.+. |.|..++..|+.++..+....|+. .....+..+..+++.+. +
T Consensus 161 ~~~~l~~lL~---d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-~----------------------- 213 (591)
T 2vgl_B 161 FLDSLRDLIA---DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-E----------------------- 213 (591)
T ss_dssp HHHHHHHTTS---CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-H-----------------------
T ss_pred HHHHHHHHhC---CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-C-----------------------
Confidence 6777777776 567788888888888877665533 23444555555555442 0
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCC
Q 000941 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1215)
Q Consensus 331 ~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1215)
...|- +- +++..+..-.|. -......+++.+...++++++.|+.++++++..+......
T Consensus 214 ---------~~~~~-q~---~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~------- 272 (591)
T 2vgl_B 214 ---------CTEWG-QI---FILDCLSNYNPK-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK------- 272 (591)
T ss_dssp ---------CCHHH-HH---HHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB-------
T ss_pred ---------CCchH-HH---HHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC-------
Confidence 01253 22 233322222221 1223456777777788999999999999888776432100
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHH
Q 000941 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL 490 (1215)
Q Consensus 411 ~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al 490 (1215)
.+ ..+....+.+.+.+...+ +++..+|..++..+..++...|..+.+|+..++ ++.+ .+..+|..++
T Consensus 273 ----~~-~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-----~~~~--d~~~Ir~~al 339 (591)
T 2vgl_B 273 ----DS-DYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFF-----VKYN--DPIYVKLEKL 339 (591)
T ss_dssp ----TT-BSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-----CCTT--SCHHHHHHHH
T ss_pred ----CH-HHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-----eccC--ChHHHHHHHH
Confidence 01 123434455555555444 467789999999999999988887777766542 2222 2367899999
Q ss_pred HHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc
Q 000941 491 TFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN 570 (1215)
Q Consensus 491 ~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 570 (1215)
.++..+.... .++.+++.+...+.+.+..++.+++..++.++.. +.+.....++.+++.+.
T Consensus 340 ~~L~~l~~~~-------nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~-----------~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 340 DIMIRLASQA-------NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK-----------VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHTCCSS-------THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCChh-------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----------ChhHHHHHHHHHHHHHc-
Confidence 9988875431 2567888888999888889999999999988743 44556667777777776
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhc---cchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHH
Q 000941 571 QDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG---NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647 (1215)
Q Consensus 571 ~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~---~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L 647 (1215)
+....|++.++.+++.++...++. ...+++.|.+.+. ....+..+++++|+.+.... + .+.++..+
T Consensus 401 -~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~--~----~~~~l~~l 469 (591)
T 2vgl_B 401 -TKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERID--N----ADELLESF 469 (591)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT--T----HHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc--C----HHHHHHHH
Confidence 446789999999999998776442 2445666666664 33568889999998864321 1 22333333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhh-cCC-CChhhHHHHHHHHHHH
Q 000941 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTL-ISD-SDLHMTALALELCCTL 711 (1215)
Q Consensus 648 ~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~-l~~-~d~~~~~~al~~l~~l 711 (1215)
..-+...+..+|..++.++.++....+.. ....+..+... ..+ .|..+++-|...++-+
T Consensus 470 ~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 470 LEGFHDESTQVQLTLLTAIVKLFLKKPSE-----TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp STTCSSSCHHHHHHHHHHHHHHHTTCCST-----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHhhccCCHHHHHHHHHHHHHHHhcCchH-----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 33333457789999999999998765432 12334433333 233 6778888887776654
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.65 E-value=3.1e-12 Score=156.92 Aligned_cols=654 Identities=12% Similarity=0.050 Sum_probs=411.4
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-cccchhHHHHHHHHHHhhccChhh---HHHH-HHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPR---VVEM-TDK 88 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~~~l~~l~~~~~~~~---~~~l-v~~ 88 (1215)
.+.|.|-|.-|+|.|.-.-..+. --..=....-+..+.+++++ +|+++.-.|++.++.+...-++.. +..+ +++
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~a-ga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~ 96 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQT-GAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPW 96 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred cccCHHHHHHHHhhceeeecccc-chHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHH
Confidence 57889999999999854433211 00000011235567777787 889999999999999986433321 1111 668
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHhccCc----------hhhH---HHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHH
Q 000941 89 LCIKLLNGKDQHRDIASIALKTIIAEVTT----------SSLA---QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1215)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~i~~~~~----------~~~~---~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~ 155 (1215)
++..+.+++++.-..++..+.+++..+.. ..+. ..-++.++..|++.+.+..-....|..+++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~ 176 (810)
T 3now_A 97 FMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITR 176 (810)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHH
Confidence 88888888888778888888888754331 1121 3346778888888888765556678888887766
Q ss_pred HHHHhh----hhhh--hhHHHHHHHHhhhhcC--C-----hHHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHhh
Q 000941 156 VLHKFG----NLMS--NDHERLLSALLPQLSA--N-----QASVRKKSVSCIASLASSLS----DDLLAKATIEVVRNLR 218 (1215)
Q Consensus 156 l~~~~g----~~l~--~~~~~ll~~ll~~l~~--~-----~~~vrk~a~~~l~~l~~~~~----~~~~~~l~~~ll~~l~ 218 (1215)
-+.+.. ..+. .-...++++....-.. + ....|..+..|+..+-..+. .+.|...+..++....
T Consensus 177 ~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (810)
T 3now_A 177 NVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKL 256 (810)
T ss_dssp HTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh
Confidence 654431 1111 1223344433221111 1 23799999999999988776 2357777777766655
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhhhhhccc---hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-H
Q 000941 219 SKGAKPEMIRTNIQMVGALSRAVGYRFGPH---LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-D 294 (1215)
Q Consensus 219 ~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~---l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~ 294 (1215)
.... .+..-.++.++..++...++. +.. -...+|.++..+.. +++.+++.|.+++...+.. + ..+.++ +
T Consensus 257 ~~~~-~~~~~~a~~alt~i~~g~~~~-~~~~~~~~G~v~~li~Ll~s---~~~~~q~~A~~al~~aa~~-~-~~R~~I~~ 329 (810)
T 3now_A 257 LAPD-MESKVRVTVAITALLNGPLDV-GNQVVAREGILQMILAMATT---DDELQQRVACECLIAASSK-K-DKAKALCE 329 (810)
T ss_dssp SSCC-HHHHHHHHHHHHHHHSSSHHH-HHHHHHTTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHTTS-H-HHHHTTHH
T ss_pred ccCC-hHhHHHHHHHHHHHhcCCHHH-HHHHHhccchHHHHHHHhCC---CCHHHHHHHHHHHHHHcCC-c-HHHHHHHH
Confidence 4443 344556778888887755433 221 24678888888873 6788999999999885443 3 333333 2
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC---c--hhhH-HHH
Q 000941 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR---P--EMLS-KLY 368 (1215)
Q Consensus 295 ~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~---~--~~l~-~~~ 368 (1215)
.-++.+..+++. . +..+|..|+.+|..+.... + ..+. .-.
T Consensus 330 ~gv~~L~~Ll~s-~---------------------------------~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 330 QGVDILKRLYHS-K---------------------------------NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHHHHHHTTC-S---------------------------------CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred cCcHHHHHHHcC-C---------------------------------CHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 223666666541 0 0268889999999886422 1 1111 124
Q ss_pred HHHHHHHHhhhccc--chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHH
Q 000941 369 EEACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1215)
Q Consensus 369 ~~i~p~Li~~~~d~--e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~ 446 (1215)
..+++.+++.+.++ +.++|..+++++..+..... ....+. .-+..++.+...+++.+..++..+
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~-------------vk~~lv-~d~g~Ip~LV~LL~s~d~~i~~~a 441 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE-------------CKEKLI-EDKASIHALMDLARGGNQSCLYGV 441 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH-------------HHHHHH-HCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH-------------HHHHHH-HccchHHHHHHHhCCCChHHHHHH
Confidence 45667777666554 67899999988888753211 000111 014566666667777777889999
Q ss_pred HHHHHHHHHhCch----------------------hhh--hhhh---------hhhHHHHHhhcCCCCcchhHHHHHHHH
Q 000941 447 FSVLRELVVVLPD----------------------CLA--DHIG---------SLIPGIEKSLNDKSSTSNLKIEALTFT 493 (1215)
Q Consensus 447 ~~~l~~L~~~~~~----------------------~l~--~~~~---------~lv~~l~~~l~d~~~~~~~~~~al~~l 493 (1215)
..+|..++..... .+. ++.. ..+|.+...++..+ +.++..|..++
T Consensus 442 l~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s--~~vqe~Aa~aL 519 (810)
T 3now_A 442 VTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES--HNSQELIARVL 519 (810)
T ss_dssp HHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 9999999873210 000 1121 35788888887543 78999999999
Q ss_pred HHHhccCCCCcchhh--hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChh-cHHHHHHHHHHHhhc
Q 000941 494 RLVLSSHSPPVFHPY--IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP-YVQPIYNAIMSRLTN 570 (1215)
Q Consensus 494 ~~l~~~~~~~~~~~~--l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~l~~ 570 (1215)
+.+... . ..... -...+|.++..+.+...+.+..|..++..++....+. ..|.. .....+|.++..|.
T Consensus 520 ~NLA~d-~--~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-----~~~~~~~~~~aIppLv~LL~- 590 (810)
T 3now_A 520 NAVCGL-K--ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-----VSFSGQRSLDVIRPLLNLLQ- 590 (810)
T ss_dssp HHHHTS-H--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-----HHTTTHHHHHTHHHHHHTTS-
T ss_pred HHHcCC-H--HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-----hhhcchhhhcHHHHHHHHhC-
Confidence 999743 1 22222 2346888888888888888999999999998653221 11111 12345677777775
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCcccch-hhhhHHHHHHhh--ccchhHHHHHHHHHHHHcCCCCCchhHHH--HHHHH
Q 000941 571 QDQDQEVKECAISCMGLVISTFGDNLGAE-LPACLPVLVDRM--GNEITRLTAVKAFAVIAASPLHIDLTCVL--EHVIA 645 (1215)
Q Consensus 571 ~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~-~~~~l~~L~~~L--~~e~~r~~a~~al~~i~~s~~~~~~~~~l--~~~l~ 645 (1215)
.+.+...+..|+.+|+.++....+.-... -...+|.|.+.+ .++..+..|++++++++.++ .....++ ...++
T Consensus 591 ~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~ 668 (810)
T 3now_A 591 QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVK 668 (810)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHH
Confidence 33344555679999998876432111111 123466666655 34568999999999998542 1223444 24788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchH--HHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchh-
Q 000941 646 ELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY--EVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVG- 722 (1215)
Q Consensus 646 ~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~- 722 (1215)
.|..++...+..+|..|..+|+.+........ ...+ ...++.|..++.++|..++..+..++..++.+ .++..
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~---s~e~~~ 744 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA---GEEIAK 744 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC---CHHHHH
Confidence 88888998899999999999999986422110 0111 13556677888899999999999999999873 22222
Q ss_pred hhhhhhhHHHHHHHhhhc
Q 000941 723 LAVRNKVLPQALALIKSS 740 (1215)
Q Consensus 723 ~~~~~~~l~~l~~ll~s~ 740 (1215)
..+....++.+..+++.+
T Consensus 745 ~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 745 KLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHTSTHHHHHTTSCCCT
T ss_pred HHHHCCCHHHHHHHHhCc
Confidence 223456778888877543
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.64 E-value=3.3e-14 Score=173.13 Aligned_cols=403 Identities=10% Similarity=0.105 Sum_probs=282.5
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhcccc-CCCChHHHHHHHHHHHHhccCc-ccchhHHHHHHHHHHhhccChh--
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEP-- 80 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~-~~~Vq~~A~~~l~~l~~~~~~~-- 80 (1215)
.+..+++.+.+.|+++|..|+..|.+.+.... ...+.-....+++.++.+|.++ +++||..|+.+|+.++...++.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47788889999999999999999999887532 1111122345889999999998 8999999999999998643221
Q ss_pred hH--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHH-HHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 81 RV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 81 ~~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~-~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
.+ ...++.|+..+.+++.++|..++.+|..++...+. ....+ ...++|.|+..+.+. +..++..++.+|+.+.
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~--~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD--YRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc--chHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHh
Confidence 11 23477788877778888999999999998865332 22222 235788999888873 6899999999999998
Q ss_pred HHhhhhh-hhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHH
Q 000941 158 HKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQ 232 (1215)
Q Consensus 158 ~~~g~~l-~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1215)
...++.. ......+++.++..+.++++.+|..|+.+|+.++...++. .+. .+++.++..+.+++ ..++..++.
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~--~~v~~~a~~ 321 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--TLVQTPALR 321 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC--HHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC--hhhHHHHHH
Confidence 6542222 1234567788888888888999999999999999654332 222 56788888888765 378889999
Q ss_pred HHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCC
Q 000941 233 MVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNF 310 (1215)
Q Consensus 233 ~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~ 310 (1215)
+++.++...+......+ ..++|.++..+. +.+.++|..+.+++..++..++..+..++ ..+++.++.++..
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---- 394 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLS---SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV---- 394 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 99999875543322222 368888888887 45789999999999999887776555444 2466666666641
Q ss_pred CCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-c--hhhHHHH-HHHHHHHHhhhcccchhH
Q 000941 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-P--EMLSKLY-EEACPKLIDRFKEREENV 386 (1215)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~--~~l~~~~-~~i~p~Li~~~~d~e~~V 386 (1215)
.++++|+.|+.+|+.+.... + +....+. ..++|.|+..+.+.++.|
T Consensus 395 ------------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 395 ------------------------------AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 12589999999999998753 3 4444333 247788888888888999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 387 KMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 387 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
|..++.++..++.......+... ....+ ....+ ...++.+...+.+++..++..+..++..+..
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~--~~~~~---~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARG--LNINE---NADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--CSSCH---HHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhhhhhccc--ccccH---HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999998875321000000 00001 11111 1234556666667777788777777776654
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=4.2e-14 Score=172.27 Aligned_cols=403 Identities=13% Similarity=0.141 Sum_probs=284.9
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhcccc-CCCChHHHHHHHHHHHHhccCcc-cchhHHHHHHHHHHhhccChhh-
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDVA-GDVSGLAVKCLAPLVKKVSEPR- 81 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~~~l~~l~~~~~~~~- 81 (1215)
.+..+++.+.+.|+++|+.|+..|.+.+.... ...+.-....+++.|+.+|.+++ ++||..|+.+|+.++...++..
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47889999999999999999999999887643 21222233468899999999987 9999999999999986422211
Q ss_pred -HH--HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 82 -VV--EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 82 -~~--~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
+. ..++.|+..+.++++.+|..++.+|..++...+. ....+.. ..+|.|+..+.+.. ++.++..++.+|+.+.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK--CRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH--HHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 11 3688888888888888999999999999864332 2222222 47888998885433 6899999999999998
Q ss_pred HHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000941 158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1215)
Q Consensus 158 ~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1215)
......-.......++.+...+.++++.++..|+.+|+.++...+.. ++ ..+++.++..+.+++ ..++..++.+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--PSVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC--hhHHHHHHHH
Confidence 76433222345667888888899989999999999999998654332 11 246788888888765 3788899999
Q ss_pred HHHHHhhhhhhhccch-hhhHHHHHHhhcccCCC-cHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhccCCCC
Q 000941 234 VGALSRAVGYRFGPHL-GDTVPVLIDYCTSASEN-DEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNF 310 (1215)
Q Consensus 234 l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~-d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~ 310 (1215)
++.++...+......+ ..++|.++..+. +. ++.+|..+.+++..++...+..+...+. .+++.++.++..
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---- 382 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLT---QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---- 382 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHc---CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 9999985543322222 457888888887 35 7899999999999998766544433332 556666666641
Q ss_pred CCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHH-HHHHHHHHhhhcccchhHHH
Q 000941 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLY-EEACPKLIDRFKEREENVKM 388 (1215)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~ 388 (1215)
.++++|+.|+.+|+.+... .++....+. ..+++.|+..+.+.++.|+.
T Consensus 383 ------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 383 ------------------------------AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 0248999999999999876 455444333 35778888888888899999
Q ss_pred HHHHHHHHHHHHhcccC-CCcCCCCCCChhhHHHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 389 DVFNTFIELVRQTGNVT-KGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 389 ~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
.++.++..+++...... .+.. ... .+...+ ...++.+.......+..++..|..++..+..
T Consensus 433 ~al~~L~~l~~~~~~~~~~~~~---~~~---~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 433 VCLEGLENILKVGETDKTLAAG---DVN---VFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---SCC---HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhcccc---ccc---HHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999987532100 0000 000 111111 1224556666667777788888888877654
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.63 E-value=4.6e-14 Score=171.85 Aligned_cols=399 Identities=13% Similarity=0.105 Sum_probs=272.4
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 000941 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1215)
Q Consensus 85 lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l 164 (1215)
.++.|+..+.+++++.|..++.+|+.++..-..+....-+-..++|.|++.+.+.+ ++.++..|+.+|+.+........
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHH
Confidence 35556666666666677777777777765322111111122457899999988753 58899999999998876432211
Q ss_pred hh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---H-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 000941 165 SN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---L-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 165 ~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
.. .....++.++..+.++++.+|..|+.+|+.++...+.. . -...++.++..+.+++ ..+++.++.+++.+++
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK--PSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC--HHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC--HHHHHHHHHHHHHHhC
Confidence 11 11345677777788888899999999999998653222 1 2357888888887743 4788899999999997
Q ss_pred hh-hhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhccCCCCCCCCCCC
Q 000941 240 AV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEED 317 (1215)
Q Consensus 240 ~~-~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~~~~~d~d 317 (1215)
.. +..-......++|.++..+. ++++++|..+++++..++...+......+. .+++.++.++..
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~----------- 310 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH----------- 310 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----------
T ss_pred CCCCCCcHHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----------
Confidence 65 32223355778999999887 467899999999999999776654443333 556777776641
Q ss_pred cccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHHHH
Q 000941 318 SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIE 396 (1215)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l~~ 396 (1215)
.+|.||..|+.+|+.+....++....++ ..++|.|+..+++.++.||..++.+++.
T Consensus 311 -----------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 311 -----------------------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp -----------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -----------------------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1379999999999999876655444333 3678888888888889999999999888
Q ss_pred HHHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch--hhhhhh--hhhhHH
Q 000941 397 LVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD--CLADHI--GSLIPG 471 (1215)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~--~l~~~~--~~lv~~ 471 (1215)
+.... + ......+ ..+++.+.+.+.+.++.+|..++.+|+.++..... ....++ ..++|.
T Consensus 368 l~~~~--------------~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~ 432 (530)
T 1wa5_B 368 ITAGN--------------T-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 432 (530)
T ss_dssp HTTSC--------------H-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHH
T ss_pred HHcCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHH
Confidence 76421 1 1122222 24556666677778889999999999999876432 222222 237888
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHhccCCC------Ccchhhhhh-----hHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000941 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSP------PVFHPYIKA-----LSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1215)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~------~~~~~~l~~-----l~p~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1215)
+...+.+.. +.++..++.++..++..... ....+|... .++.+.....+++..+...|..++..++.
T Consensus 433 L~~ll~~~~--~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 433 LCDLLEIAD--NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHTTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCC--HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 888888653 67888899999888764321 012233333 25566665667778888888888777653
No 32
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.61 E-value=3.1e-11 Score=153.72 Aligned_cols=666 Identities=10% Similarity=0.085 Sum_probs=389.2
Q ss_pred CCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhcc----Cc-----ccchhHHHHHHHHHHhhccChhhHHHH
Q 000941 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD----DV-----AGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1215)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~----D~-----~~~Vq~~A~~~l~~l~~~~~~~~~~~l 85 (1215)
+.++.+||.|+.-|.+.+.+.|..++++....+.+.++..+. +| ++-+++.-..+++.++.+.-++.|+.+
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~f 151 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTF 151 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHH
Confidence 568899999999999999999988888777777777776664 33 467889999999999987666789999
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCc---h---hhH----HHHHHhHhHHHH----hhhhccCCChhHHHHHHH
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---S---SLA----QSIHTSLTPQLT----KGITLKDMNTEIRCECLD 151 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~---~---~~~----~~~~~~l~p~L~----~~l~~~~~~~~v~~~al~ 151 (1215)
++.|++...+ ++...+.....|+.+.+++.. . ... ...+..-+|.++ ..++... ++++...+++
T Consensus 152 i~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~~~lv~~~L~ 229 (1073)
T 3gjx_A 152 ISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-NAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHH
Confidence 9999987753 334566777788888877432 0 000 111222234444 3444432 5666677777
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHH-hhhhcCChHHHHHHHHHHHHHHHhhcCH---HH----HHHHHHHHHHHhh-----
Q 000941 152 ILCDVLHKFGNLMSNDHERLLSAL-LPQLSANQASVRKKSVSCIASLASSLSD---DL----LAKATIEVVRNLR----- 218 (1215)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~ll~~l-l~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~----~~~l~~~ll~~l~----- 218 (1215)
+++..++-.....- ....+++.+ ...+. .+.+|..|+.||..++..-.+ +. |..++..+-..+.
T Consensus 230 ~L~~~~sWI~i~~i-~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l 306 (1073)
T 3gjx_A 230 TLLRFLNWIPLGYI-FETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNI 306 (1073)
T ss_dssp HHHHHTTTSCTHHH-HSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCH
T ss_pred HHHHHHHhcCHHHh-ccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 77766554322110 113466655 46664 457999999999998864221 22 3333333222221
Q ss_pred -----cCC-CChHHHHHHHHHHHHHHhhhh------hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh
Q 000941 219 -----SKG-AKPEMIRTNIQMVGALSRAVG------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 219 -----~~~-~~~~~~~~~i~~l~~l~~~~~------~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~ 286 (1215)
..+ ++.+..+....++..+++.-. ..+.+++...+..++.... -+|.|+-+.|+..+..++...-
T Consensus 307 ~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~---~~d~ei~kitf~fW~~L~~~L~ 383 (1073)
T 3gjx_A 307 RLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE---VEETEIFKICLEYWNHLAAELY 383 (1073)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHH
Confidence 111 111222223334433333221 1234455555666676555 4688899999998888765321
Q ss_pred -------------------------hhhcccHHHHHHHHHHHhccCCCCCCCCCCCccc----cccccc-----------
Q 000941 287 -------------------------RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD----EAYEEE----------- 326 (1215)
Q Consensus 287 -------------------------~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~----~~~~~~----------- 326 (1215)
..++|++.++...+..-+.|.+..-..++|++|- +-|.++
T Consensus 384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L 463 (1073)
T 3gjx_A 384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 463 (1073)
T ss_dssp HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence 1256677777888877777654321111111110 000000
Q ss_pred -------chhhhc---CCC---CCCCCccHHHHHHHHHHHHHHHhhCch-hhHHHHHHHHHHHHhhhccc---chh--HH
Q 000941 327 -------EEDESA---NEY---TDDEDASWKVRRAAAKCLAALIVSRPE-MLSKLYEEACPKLIDRFKER---EEN--VK 387 (1215)
Q Consensus 327 -------~d~~~~---~~~---~dd~d~swkvR~~Aa~~L~~li~~~~~-~l~~~~~~i~p~Li~~~~d~---e~~--Vr 387 (1215)
.++-.. +.. .+.+..+|+.+++++-+++++..+..+ .-..++..+++.|+.....+ +.. |+
T Consensus 464 ~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~va 543 (1073)
T 3gjx_A 464 VYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIA 543 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHH
Confidence 000000 000 022346799999999999999876653 34567888888887554222 122 33
Q ss_pred HHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhh------
Q 000941 388 MDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL------ 461 (1215)
Q Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l------ 461 (1215)
..+..+++..-+.+ . .-.++++++++.+.+.+.+.++.++.+|+.+|..+++..+..+
T Consensus 544 s~i~~vlgrY~~wl-------~---------~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~ 607 (1073)
T 3gjx_A 544 SNIMYIVGQYPRFL-------R---------AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVG 607 (1073)
T ss_dssp HHHHHHHHHCHHHH-------H---------HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTT
T ss_pred HHHHHHHhhhHHHH-------H---------hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 32223333322222 1 1145778889999999999889999999999999998876654
Q ss_pred --hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcc-hhhhhhhHHHHHHHhc--------------CCc
Q 000941 462 --ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF-HPYIKALSSPVLAAVG--------------ERY 524 (1215)
Q Consensus 462 --~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~l~~l~p~l~~~l~--------------d~~ 524 (1215)
.+++.+++..+..+..+-. +.-...-...++.++...+++.- ..++..+++......+ |+.
T Consensus 608 e~~p~i~~il~~~~~~~~~l~--~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~ 685 (1073)
T 3gjx_A 608 EVMPFIDEILNNINTIICDLQ--PQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE 685 (1073)
T ss_dssp CSSCHHHHHHTSHHHHHTTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred ccchHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH
Confidence 3477777777666654322 33344556777888887765442 3478888877766542 111
Q ss_pred -hHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhc----------cCC----C-H------HHHHHHH
Q 000941 525 -YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN----------QDQ----D-Q------EVKECAI 582 (1215)
Q Consensus 525 -~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~----------~d~----~-~------~Vr~~Ai 582 (1215)
-+....-+++....+..++ ..|.|++..+|+.+++.-+. .+. + + .+|..-+
T Consensus 686 ~i~~l~~il~~n~~v~~~~g-------~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil 758 (1073)
T 3gjx_A 686 TVKQLGSILKTNVRACKAVG-------HPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETL 758 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHhhcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHH
Confidence 1333445556566666664 46889998888876654321 000 1 1 1333333
Q ss_pred HHHHHHHHhccCc---ccchhhhhHHHHHHhhc--cchhHHH-HHHHHHHHHcCCCCCchhHHHHHHHHHH----HHHHH
Q 000941 583 SCMGLVISTFGDN---LGAELPACLPVLVDRMG--NEITRLT-AVKAFAVIAASPLHIDLTCVLEHVIAEL----TAFLR 652 (1215)
Q Consensus 583 ~~lg~l~~~~~~~---l~~~~~~~l~~L~~~L~--~e~~r~~-a~~al~~i~~s~~~~~~~~~l~~~l~~L----~~~L~ 652 (1215)
..+...+.+..+. ....++.++..++.-.+ .+..|.. .+.....++.. .+..+.+.++.++..+ ...+.
T Consensus 759 ~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k-~~~~~~~~~~~il~~vf~~Tl~mi~ 837 (1073)
T 3gjx_A 759 KLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNK-LGGHITAEIPQIFDAVFECTLNMIN 837 (1073)
T ss_dssp HHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHH-HGGGTGGGHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHHHHHHh
Confidence 4444444433220 11234444444433222 2233332 34444444421 1223355565555544 34444
Q ss_pred ---HhhhHHHHHHHHHHHHHHHHhCCC---CCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 653 ---KANRALRQATLGTMNSLVVAYGDK---IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 653 ---~~~~~lr~~al~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.+.+..|..=+..+..+..++... +++..+..++..+.=.++.+...+...++.++..++..
T Consensus 838 ~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 838 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 456789999999999999887654 44556777888887778888888888888888777654
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=1e-11 Score=152.70 Aligned_cols=453 Identities=12% Similarity=0.117 Sum_probs=285.6
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh
Q 000941 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG 250 (1215)
Q Consensus 171 ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~ 250 (1215)
....+...+.++++.+|..|+.+++.++ ..++.+.+++.+.+.+.+++ +.+|+.++.+++.+.+..|..+.
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~--~~VRk~A~~al~~l~~~~p~~v~---- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSN--SYLRKKAALCAVHVIRKVPELME---- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHCGGGGG----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHChHHHH----
Confidence 4455667788888899999999998887 45677788888888888765 47899999999999987775433
Q ss_pred hhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh---hhcccHHHHHHHHHHHhc--cCCCCCCCCCCCcccccccc
Q 000941 251 DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR---DISSYCDEILHLTLEYLS--YDPNFTDNMEEDSDDEAYEE 325 (1215)
Q Consensus 251 ~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~---~~~~~l~~ii~~~l~~l~--~dpn~~~~~d~d~~~~~~~~ 325 (1215)
.+++.+...+. |.|..++..|+.++..++...|+ .+.++++.++..+...+. +.|.|.
T Consensus 179 ~~~~~l~~lL~---D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~-------------- 241 (618)
T 1w63_A 179 MFLPATKNLLN---EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHD-------------- 241 (618)
T ss_dssp GGGGGTTTSTT---CCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTC--------------
T ss_pred HHHHHHHHHhC---CCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcccc--------------
Confidence 44445555555 57788999999999888766553 345556666665544432 222221
Q ss_pred cchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhh---hcccchhHHHHHHHHHHHHHHHhc
Q 000941 326 EEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDR---FKEREENVKMDVFNTFIELVRQTG 402 (1215)
Q Consensus 326 ~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~---~~d~e~~Vr~~~~~~l~~l~~~~~ 402 (1215)
|.. ....|- +-...++++.+....|+.-..++ .+++.++.. .+..+..|..++++++..+ .
T Consensus 242 ---------~~~-~~~~~~-q~~il~~L~~l~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~ 305 (618)
T 1w63_A 242 ---------VSG-ISDPFL-QVRILRLLRILGRNDDDSSEAMN-DILAQVATNTETSKNVGNAILYETVLTIMDI----K 305 (618)
T ss_dssp ---------SSS-SSCHHH-HHHHHHHHHHHTTTCHHHHHTTH-HHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----C
T ss_pred ---------ccC-CCCChH-HHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHHHhc----C
Confidence 000 112364 44466777777665554322222 233333322 2334467777777766543 1
Q ss_pred ccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCc
Q 000941 403 NVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST 482 (1215)
Q Consensus 403 ~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~ 482 (1215)
. .+ .+ ....++.+.+.+.++++.+|..++..+..++...|..+.+|.. .+..++.|+.
T Consensus 306 ~-----------~~--~l---~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d~d-- 363 (618)
T 1w63_A 306 S-----------ES--GL---RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKDLD-- 363 (618)
T ss_dssp C-----------CH--HH---HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGSSC--
T ss_pred C-----------CH--HH---HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccCCC--
Confidence 0 01 11 2345667777788888899999999999999887766666555 4556677654
Q ss_pred chhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHH
Q 000941 483 SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYN 562 (1215)
Q Consensus 483 ~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 562 (1215)
..+|..++.++..++... . +..+++.+...+.+.+..++..++..++.++....+ .+..|++.+
T Consensus 364 ~~Ir~~alelL~~l~~~~---n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~-------~~~~~v~~l-- 427 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGN---N----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP-------SKRWHIDTI-- 427 (618)
T ss_dssp HHHHHHHHHHHHHHCCSS---S----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC-------CHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHcccc---c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc-------cHHHHHHHH--
Confidence 789999999999987532 2 466777888888777788999999999999875422 344455444
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhHHHHHHHHHHHHcC---C-CCC--ch
Q 000941 563 AIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS---P-LHI--DL 636 (1215)
Q Consensus 563 ~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~s---~-~~~--~~ 636 (1215)
++.+... ...++..++.++..++...++.-...+..++..+.+...++.....+++.+|+.+.. + ... .+
T Consensus 428 --l~lL~~~--~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 428 --MRVLTTA--GSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp --HHHHHHT--GGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred --HHHHHhc--cchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 4444432 245667778888888876543211133333444433222344556789999988731 0 000 00
Q ss_pred hHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHh
Q 000941 637 TCVLEHVIAELTAFLR--KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLM 712 (1215)
Q Consensus 637 ~~~l~~~l~~L~~~L~--~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~ 712 (1215)
...-..++..|..++. ..+..+|..++.++.++....+. ..+.+...+.....+.|..+++-|...+.-+.
T Consensus 504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 0011233444555554 45788999999999999876543 12333333445567788999998888777654
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.8e-12 Score=161.45 Aligned_cols=473 Identities=12% Similarity=0.070 Sum_probs=310.1
Q ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh----HHHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhccCchh
Q 000941 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR----VVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSS 119 (1215)
Q Consensus 45 ~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~----~~~lv~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~~~ 119 (1215)
...++.|.++|.++++.||..|+++|+.++..-.... ....++.|+..+.++ +.+.|..++.+|+.+...- .
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~---~ 89 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---E 89 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH---H
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---h
Confidence 4568888899999999999999999999987544321 125677788777654 5667888888888765431 2
Q ss_pred hHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 000941 120 LAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALLPQLSANQASVRKKSVSCIASL 197 (1215)
Q Consensus 120 ~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~-~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1215)
....+.+ ..+|.|+..+.+. ++.++..++.+|..+........... ....++.++..+.++++.++..++.+|..+
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 2222222 4788999888875 58999999999999987754332222 246788888999988888999999999998
Q ss_pred HhhcCHH---H-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHH
Q 000941 198 ASSLSDD---L-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELR 271 (1215)
Q Consensus 198 ~~~~~~~---~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elr 271 (1215)
+...++. + -...++.+++.+++... ...+..++.++..++.... ...++ ...+|.+++.+. +.+.+++
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~---~~~~~~~ 241 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLT---DPSQRLV 241 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTT---CSCHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHh---cCCHHHH
Confidence 8643222 1 12457778888876653 4566677788888775322 12222 246888888887 4578999
Q ss_pred HHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHH
Q 000941 272 EYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAK 351 (1215)
Q Consensus 272 e~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~ 351 (1215)
+.+..++..++...+.. .....+++.+++++.. .++.+|+.|+.
T Consensus 242 ~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~----------------------------------~d~~v~~~a~~ 285 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS----------------------------------DDINVVTCAAG 285 (644)
T ss_dssp HHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC----------------------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC----------------------------------CCHHHHHHHHH
Confidence 99999999998765532 2345778888777741 12589999999
Q ss_pred HHHHHHhhCchhhHHHH-HHHHHHHHhhhcccc--hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HH
Q 000941 352 CLAALIVSRPEMLSKLY-EEACPKLIDRFKERE--ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SK 426 (1215)
Q Consensus 352 ~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~e--~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~ 426 (1215)
+|..+....++....+. ...++.|+..+.+.. +.||..++.+++.+..... .....+..+ ..
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~-------------~~~~~q~~v~~~~ 352 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-------------EAEMAQNAVRLHY 352 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-------------THHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc-------------hHHHHHHHHHHcc
Confidence 99999776544333222 236777877776532 6899999888888753211 000111111 23
Q ss_pred HHHHHHHHhcccC-hhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCC--------------------CCcch
Q 000941 427 IVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDK--------------------SSTSN 484 (1215)
Q Consensus 427 i~~~l~~~L~~~~-~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~--------------------~~~~~ 484 (1215)
.++.+.+.|.+.+ +.++..++.+++.++...... .. .-..++|.+...+.+. .....
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~ 431 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 431 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHH
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHH
Confidence 4566777777664 578999999999987532111 11 0123445555544431 11234
Q ss_pred hHHHHHHHHHHHhccCCCCcchhh--hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH--HH
Q 000941 485 LKIEALTFTRLVLSSHSPPVFHPY--IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PI 560 (1215)
Q Consensus 485 ~~~~al~~l~~l~~~~~~~~~~~~--l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~--~l 560 (1215)
++..++.+|..+.... ..... -...+|.++..+.+...+++..|..++..++.. + .....+. ..
T Consensus 432 v~~~a~~aL~~La~~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~-------~~~~~i~~~g~ 499 (644)
T 2z6h_A 432 IVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-------EAAEAIEAEGA 499 (644)
T ss_dssp HHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--H-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCH---HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-------HHHHHHHHcCC
Confidence 6667778888776532 11222 235788999999988889999999988887631 0 1111111 12
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 000941 561 YNAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1215)
Q Consensus 561 ~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~ 592 (1215)
++.+.+.+. +.+.+||+.|..+++.+....
T Consensus 500 l~~L~~ll~--~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 500 TAPLTELLH--SRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHTT--CSCHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHc--CCCHHHHHHHHHHHHHHhccC
Confidence 334444443 567999999999999986554
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.58 E-value=1.7e-12 Score=158.00 Aligned_cols=399 Identities=12% Similarity=0.099 Sum_probs=271.4
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
++.|+..+.+++++.|..|+.+|+.++..-+.+....-+-..++|.|++.+.+.+ ++.++..|+.+|+.+.........
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5566666666777778888888888776443111222233467899999888753 489999999999999864332211
Q ss_pred h-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--HH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 000941 166 N-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--LL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1215)
Q Consensus 166 ~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1215)
. .....++.++..+.++++.+|..|+.+|+.++...+.. .+ ...++.++..+.+.. +..+++.++.+++.++..
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 1 11246788888899988999999999999998653321 12 136788888885433 257888999999999987
Q ss_pred hhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhccCCCCCCCCCCCcc
Q 000941 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEEDSD 319 (1215)
Q Consensus 241 ~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~dpn~~~~~d~d~~ 319 (1215)
.+..-......++|.+++.+. +.+++++..++.++..++...+......+. .+++.+..++..
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------------- 297 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIH---SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------- 297 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-------------
T ss_pred CCCCcHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-------------
Confidence 543333356778999998887 578999999999999988665533322222 456666666641
Q ss_pred cccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhccc-chhHHHHHHHHHHHH
Q 000941 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER-EENVKMDVFNTFIEL 397 (1215)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~-e~~Vr~~~~~~l~~l 397 (1215)
.+|.||..|+.+|+.+....++....++ ..++|.|+..+++. ++.||..++.++..+
T Consensus 298 ---------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 298 ---------------------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ---------------------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1268999999999999876654444333 34678888888777 899999999998888
Q ss_pred HHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHHHHH
Q 000941 398 VRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEK 474 (1215)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~l~~ 474 (1215)
.... + ......+ ..+++.+.+.+.+.+..+|..++.+|+.++.........++ ..+++.+..
T Consensus 357 ~~~~--------------~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 357 TAGN--------------K-DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp HTSC--------------H-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HCCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 6421 1 1112111 24556666777777888999999999999886333233333 357888888
Q ss_pred hhcCCCCcchhHHHHHHHHHHHhccCCC------Ccchhhhhh-----hHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 000941 475 SLNDKSSTSNLKIEALTFTRLVLSSHSP------PVFHPYIKA-----LSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1215)
Q Consensus 475 ~l~d~~~~~~~~~~al~~l~~l~~~~~~------~~~~~~l~~-----l~p~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1215)
.+.+.. +.++..++.++..++..... ....+|... .+..+.....+.+..+...|..++..++.
T Consensus 422 lL~~~d--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 422 LLICPD--IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp GGGCSC--HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHcCCC--HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 888743 67888899999888764211 011122222 24445555566777888888888777653
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.57 E-value=1.6e-12 Score=164.26 Aligned_cols=510 Identities=10% Similarity=0.073 Sum_probs=317.7
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
++.+...+.+++.+.|..++..++.. .. ..+....+|.|+..+.+. ++.+|..|+.+|+.+.........
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~-~~-------~~i~~g~ip~Lv~lL~~~--d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQ-DD-------AELATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhh-hH-------HHHHhCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhCCChhHHH
Confidence 45666666666666666555555432 11 122355678888877754 689999999999998765432211
Q ss_pred -hhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHH--HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q 000941 166 -NDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDD--LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1215)
Q Consensus 166 -~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~--~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~ 240 (1215)
...+..++.++..|.++ ++.+|+.|+.+|..++...... +. ...++.+++.+++++ ..++..++.+++.++..
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCC
Confidence 12346677777777644 7789999999999987542111 11 247888888888764 47889999999999986
Q ss_pred hhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCCCCCCCCCc
Q 000941 241 VGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDS 318 (1215)
Q Consensus 241 ~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d~d~ 318 (1215)
.+..-.... ..++|.+++.+. +.+.++++.+..++..|+..+++.-..+. ...++.++++++..
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~---~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----------- 330 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----------- 330 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC-----------
T ss_pred ChhhHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-----------
Confidence 443212222 468899999887 46788999999999988765543211111 13455566666410
Q ss_pred ccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHH-HHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 000941 319 DDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL-YEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1215)
Q Consensus 319 ~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~-~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l 397 (1215)
....++..++.++..+..+ ++....+ -..++|.|+..+++.++.++..+..++..+
T Consensus 331 ----------------------~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 331 ----------------------TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0124566778888777643 3322222 234678888888888888888888888887
Q ss_pred HHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhh
Q 000941 398 VRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSL 476 (1215)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l 476 (1215)
.+.... ......+++.+.+.+.++++.+|..++.+|+.|+...+..-.. .-...++.+...+
T Consensus 388 ~~~~~~-----------------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 450 (780)
T 2z6g_A 388 SDAATK-----------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450 (780)
T ss_dssp HTTCTT-----------------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHH
T ss_pred hccchh-----------------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 754210 0012356666777788888999999999999997643221111 1123466666777
Q ss_pred cCCCCcchhHHHHHHHHHHHhccCCCCc-chh--hhhhhHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhccCCCcCCCCC
Q 000941 477 NDKSSTSNLKIEALTFTRLVLSSHSPPV-FHP--YIKALSSPVLAAVGERY-YKVTAEALRVCGELVRVLRPSVEGLGFD 552 (1215)
Q Consensus 477 ~d~~~~~~~~~~al~~l~~l~~~~~~~~-~~~--~l~~l~p~l~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~ 552 (1215)
.+......++..++.+|+.+...+.... .+. .-...+|.++..+.+.. +.++.+|..++++++.. +. .
T Consensus 451 ~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~--~~------~ 522 (780)
T 2z6g_A 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PA------N 522 (780)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS--HH------H
T ss_pred HccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--HH------H
Confidence 6533323789999999999865433211 111 12356888888887665 48999999999998732 10 0
Q ss_pred ChhcHH-HHHHHHHHHhhcc--------------------CCCHHHHHHHHHHHHHHHHhccCcccch--hhhhHHHHHH
Q 000941 553 FKPYVQ-PIYNAIMSRLTNQ--------------------DQDQEVKECAISCMGLVISTFGDNLGAE--LPACLPVLVD 609 (1215)
Q Consensus 553 ~~~~l~-~l~~~l~~~l~~~--------------------d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~--~~~~l~~L~~ 609 (1215)
...... .+++.+++.+... ....++++.|+.+|+.++..- ..... -..+++.|++
T Consensus 523 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 523 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhHHHHHHCCcHHHHHH
Confidence 011111 2334444444321 112568888899988875321 11111 1345778888
Q ss_pred hhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Q 000941 610 RMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEH--VIAELTAFLRKANRALRQATLGTMNSLVVAYG 674 (1215)
Q Consensus 610 ~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~--~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 674 (1215)
.+++ +.++..|+.+|..++..+ .....+.+ .++.|..++.+.+..+|..+..+|..+....+
T Consensus 601 lL~~~~~~v~~~a~~aL~~L~~~~---~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTSH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCH---HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 7754 457888999999887431 12233333 56778888888999999999999999987654
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=9.1e-12 Score=153.24 Aligned_cols=476 Identities=13% Similarity=0.102 Sum_probs=291.2
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
..++.-+.+.|...|.|+-.-+...+. -+++...-+++.+.+-|+|+|+.||..|+++||.+.. ++..+.++
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~-----~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~ 144 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLD-----ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLA 144 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHH
Confidence 344455556666666665554444433 2455567788999999999999999999999999873 45567788
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh---
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL--- 163 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~--- 163 (1215)
+.+...+.+.++.+|..|+.|+..++...|. ..+.++|.+...+.+. ++.|+..|+.+|+++....+..
T Consensus 145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~------~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPE------LMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG------GGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHChH------HHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHH
Confidence 8888888888999999999999999875543 2346677777777765 5899999999999987654432
Q ss_pred hhhhHHHHHHHHhhhhc-----------CChHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHhhcCC-CChHHHHH
Q 000941 164 MSNDHERLLSALLPQLS-----------ANQASVRKKSVSCIASLASSLSDD--LLAKATIEVVRNLRSKG-AKPEMIRT 229 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~-----------~~~~~vrk~a~~~l~~l~~~~~~~--~~~~l~~~ll~~l~~~~-~~~~~~~~ 229 (1215)
+.+..+.+...+-.... .+++-.+...+.+++.++..-++. .+.+++..++....... ....+...
T Consensus 217 ~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 217 FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 22233444444433221 235567777888888887653321 12233333333221111 11123333
Q ss_pred HHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCC
Q 000941 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPN 309 (1215)
Q Consensus 230 ~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn 309 (1215)
++.++..+ .+. .......++.+..++. +.|+++|..++.++..++...|..+.+|.+.++..+ +|+
T Consensus 297 a~~~i~~l---~~~--~~l~~~a~~~L~~~L~---~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-----~d~- 362 (618)
T 1w63_A 297 TVLTIMDI---KSE--SGLRVLAINILGRFLL---NNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL-----KDL- 362 (618)
T ss_dssp HHHHHHHS---CCC--HHHHHHHHHHHHHHHT---CSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-----GSS-
T ss_pred HHHHHHhc---CCC--HHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-----cCC-
Confidence 44444332 111 1112345666667666 467899999999999999999988888887766543 111
Q ss_pred CCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHH
Q 000941 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMD 389 (1215)
Q Consensus 310 ~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~ 389 (1215)
| ..||+.|..++..+.... .+. .+++.+++.+.+.+.++|..
T Consensus 363 ------------------------------d--~~Ir~~alelL~~l~~~~--nv~----~iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 363 ------------------------------D--VSIKRRAMELSFALVNGN--NIR----GMMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp ------------------------------C--HHHHHHHHHHHHHHCCSS--STH----HHHHHHHHHHHHCCHHHHHH
T ss_pred ------------------------------C--hhHHHHHHHHHHHHcccc--cHH----HHHHHHHHHHHhCCHHHHHH
Confidence 1 379999999999887642 223 34445555556777899999
Q ss_pred HHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhh
Q 000941 390 VFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLI 469 (1215)
Q Consensus 390 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv 469 (1215)
++.+++.+..... + ....+++.+++. +++....++..++..+..++...|+.-. ..+
T Consensus 405 ~v~~I~~la~k~~-------------~--~~~~~v~~ll~l----L~~~~~~v~~~~~~~l~~ii~~~p~l~~----~~v 461 (618)
T 1w63_A 405 CASGIFLAAEKYA-------------P--SKRWHIDTIMRV----LTTAGSYVRDDAVPNLIQLITNSVEMHA----YTV 461 (618)
T ss_dssp HHHHHHHHHHSSC-------------C--CHHHHHHHHHHH----HHHTGGGSCSSHHHHHHHHHHHSCSTHH----HHH
T ss_pred HHHHHHHHHHHhC-------------c--cHHHHHHHHHHH----HHhccchhHHHHHHHHHHHHhcChhHHH----HHH
Confidence 9999999876432 1 234455555544 4444444566667778888776654222 233
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHhccCC--------CCcchhhhhhhHHHHHHHhc--CCchHHHHHHHHHHHHHH
Q 000941 470 PGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS--------PPVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 470 ~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~--------~~~~~~~l~~l~p~l~~~l~--d~~~~v~~~al~~l~~l~ 539 (1215)
+.+...+.+......+...++.++|....... |....| ..+++.+...++ .....++..++.++..+.
T Consensus 462 ~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~ 539 (618)
T 1w63_A 462 QRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE--DEVLDILESVLISNMSTSVTRGYALTAIMKLS 539 (618)
T ss_dssp HHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH--HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44444444321112333357778887753211 101111 122333333332 345688888888887776
Q ss_pred HhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000941 540 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
... | ...+.+ ..+++... .+.|.+||++|...+.-+
T Consensus 540 ~~~-~-------~~~~~l----~~~L~~~~-~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 540 TRF-T-------CTVNRI----KKVVSIYG-SSIDVELQQRAVEYNALF 575 (618)
T ss_dssp TTC-S-------SCHHHH----HHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HhC-c-------chHHHH----HHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 432 1 123333 33444443 577899999999887654
No 38
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.56 E-value=1.5e-10 Score=152.27 Aligned_cols=530 Identities=9% Similarity=0.067 Sum_probs=320.6
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh----ccCh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSE 79 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~----~~~~ 79 (1215)
..+..+++.+.++|++.|..|-.-|.+. ++.. +... .+..++. ++++.+||..|...|-..+. .+++
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p-----~~~~-~l~~iL~--~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKF-QDNP-----DAWQ-KADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHST-----TGGG-GHHHHHH--HCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHH-HhCc-----hHHH-HHHHHHh--hCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 5677888888899999999998888544 3321 1111 1222222 25688999999999998875 3666
Q ss_pred hhHHHHHHHHHHHhcCC---------CcchhhHHHHHHHHHHhc-cCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNG---------KDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~---------~~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
+....+-..|+..+.+. +..+|.-.+.++..++.. .|. -+..++|.|++.++. +...+..+
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~------~Wp~ll~~L~~~~~~---~~~~~~~~ 157 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSS---SVNVCENN 157 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHcc---ChHHHHHH
Confidence 66666666666665432 133455555556655542 232 255677788777752 34456666
Q ss_pred HHHHHHHHHHhh----------------hhhhhhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHH-H-HHHH
Q 000941 150 LDILCDVLHKFG----------------NLMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL-L-AKAT 210 (1215)
Q Consensus 150 l~~L~~l~~~~g----------------~~l~~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~-~-~~l~ 210 (1215)
+.+|..+.+... ..+..+.+.+++.+...+.+. +..+++.++.|+..+....+... + ..++
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll 237 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHH
Confidence 666666665443 223445666777776666543 45799999999998887776443 2 2455
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhhh-hh---hhccchhhhHHHHHHhhc---------------ccCCCcHHHH
Q 000941 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GY---RFGPHLGDTVPVLIDYCT---------------SASENDEELR 271 (1215)
Q Consensus 211 ~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~-~~---~~~~~l~~iip~ll~~~~---------------~~~~~d~elr 271 (1215)
+.+.+.+.. +++.+..+++|+..++..- +. ++...+..+++.++..+. ..+++|++..
T Consensus 238 ~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~ 314 (1049)
T 3m1i_C 238 ELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFL 314 (1049)
T ss_dssp HHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHH
T ss_pred HHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHH
Confidence 555533322 2478889999999888652 11 122233333333333211 1123455554
Q ss_pred HHHHHHHHHHHHhC------hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHH
Q 000941 272 EYSLQALESFLLRC------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKV 345 (1215)
Q Consensus 272 e~al~~l~~l~~~~------~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkv 345 (1215)
+.....+..+...+ +..+.+++..+++.++....++ +..|
T Consensus 315 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~----------------------------------d~~v 360 (1049)
T 3m1i_C 315 QDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE----------------------------------EREL 360 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS----------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC----------------------------------cHHH
Confidence 44444444433322 2235677788888887765421 0145
Q ss_pred HHHHHHHHHHHHh------hCchhhHHHHHHHHHHHHhhhcccc----------------------hhHHHHHHHHHHHH
Q 000941 346 RRAAAKCLAALIV------SRPEMLSKLYEEACPKLIDRFKERE----------------------ENVKMDVFNTFIEL 397 (1215)
Q Consensus 346 R~~Aa~~L~~li~------~~~~~l~~~~~~i~p~Li~~~~d~e----------------------~~Vr~~~~~~l~~l 397 (1215)
+..+...+..+.. ...+.+.+++..+++.++.++.-++ .+.|..+..++..+
T Consensus 361 ~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l 440 (1049)
T 3m1i_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHH
Confidence 6666666666655 2335667788888888887652211 02233344444444
Q ss_pred HHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhc--ccChhhHHHHHHHHHHHHHhCchhhh-hhhhhhhHHHHH
Q 000941 398 VRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLR--EKSIKTKVGAFSVLRELVVVLPDCLA-DHIGSLIPGIEK 474 (1215)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~--~~~~~~r~~~~~~l~~L~~~~~~~l~-~~~~~lv~~l~~ 474 (1215)
.... + .+.++.+.+.+.+.+. ..+|+.+.+++.+++.++....+... ++++.+++.+..
T Consensus 441 ~~~~--------------~----~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~ 502 (1049)
T 3m1i_C 441 THLN--------------V----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD 502 (1049)
T ss_dssp HHHC--------------H----HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HccC--------------H----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH
Confidence 3221 1 2345666666666665 35788999999999998876554433 357888887776
Q ss_pred hhcCCC---CcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCc-CCC
Q 000941 475 SLNDKS---STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE-GLG 550 (1215)
Q Consensus 475 ~l~d~~---~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~-~~~ 550 (1215)
...... ..+.++..++.+++.+.+.... -..|++.+++.++.++.++.++|+..|..++..+++.++..-. ...
T Consensus 503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~ 580 (1049)
T 3m1i_C 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP 580 (1049)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCT
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 432211 1123444566676655432111 1248999999999999998899999999999999987643100 012
Q ss_pred CCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccC--cccchhhhhHHHHHHh
Q 000941 551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD--NLGAELPACLPVLVDR 610 (1215)
Q Consensus 551 ~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~--~l~~~~~~~l~~L~~~ 610 (1215)
....||++.++..+...+.. .+.+-....+.|+|.++...++ ...+++..+++.+.++
T Consensus 581 ~~~~p~~~~il~~l~~~~~~--~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~ 640 (1049)
T 3m1i_C 581 RESEPFIQTIIRDIQKTTAD--LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMA 640 (1049)
T ss_dssp TCSSCHHHHHHHTHHHHHTT--SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 23459999999988887763 4555567889999999988873 3445677777666544
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.56 E-value=1.1e-09 Score=140.61 Aligned_cols=630 Identities=12% Similarity=0.082 Sum_probs=362.5
Q ss_pred CchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCc---ccchhHHHHHHHHHHhh
Q 000941 1 MANLQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV---AGDVSGLAVKCLAPLVK 75 (1215)
Q Consensus 1 ~~~~~l~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~---~~~Vq~~A~~~l~~l~~ 75 (1215)
|....|.+.++..-++ |++.|..|..-|. .+++. ++ ........|.++ +.+||.-|...|...++
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~-~~q~s-----p~----aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~ 72 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIG-SLRSS-----ST----GWKICHEIFSEKTKYKPSTRLICLQTLSEKVR 72 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-HHHHS-----TT----HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HHHcC-----hh----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566677777554444 7899999977663 33331 11 233444555543 68999999999998888
Q ss_pred ccChh----hHHHHHHHHHHHhcCC-----CcchhhHHHHHHHHHHhcc-CchhhHHHHHHhHhHHHHhhhhccCCChhH
Q 000941 76 KVSEP----RVVEMTDKLCIKLLNG-----KDQHRDIASIALKTIIAEV-TTSSLAQSIHTSLTPQLTKGITLKDMNTEI 145 (1215)
Q Consensus 76 ~~~~~----~~~~lv~~L~~~~~~~-----~~~~r~~a~~aL~~~i~~~-~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v 145 (1215)
.++++ ....+-..|+..+.+. ..-+|.--+.+|..++... |. .|...++.+++.++..+ ....
T Consensus 73 ~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~------~Wp~~i~~l~~~~~~~~-~~~~ 145 (980)
T 3ibv_A 73 EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS------NWNDFFASLQGVIAASS-QSEF 145 (980)
T ss_dssp HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHHC-CHHH
T ss_pred hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc------cCchHHHHHHHHhcCCC-hhHH
Confidence 88888 7777777777776532 2335666666666665432 21 24455666666555432 1133
Q ss_pred HHHHHHHHHHHHHHhhhh------------------hhhh-HHHHHHHHhhhh----cCChHHHHHHHHHHHHHHHhhcC
Q 000941 146 RCECLDILCDVLHKFGNL------------------MSND-HERLLSALLPQL----SANQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 146 ~~~al~~L~~l~~~~g~~------------------l~~~-~~~ll~~ll~~l----~~~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
....+.+|..+-+..+.. +... .+.+.+..+..+ .+.++.+++.++.|++....-++
T Consensus 146 ~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 146 SNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 444555555444443221 1111 122233333333 33566889999999999998877
Q ss_pred HHHH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh--hhccchhhh-HHHHHHhhcccCCCcHHHHHHHH--
Q 000941 203 DDLL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDT-VPVLIDYCTSASENDEELREYSL-- 275 (1215)
Q Consensus 203 ~~~~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~--~~~~~l~~i-ip~ll~~~~~~~~~d~elre~al-- 275 (1215)
-.++ ..+++.+++.+.+ ++.|..+++|+..++..... ...+.+..+ +...+..+... ++|.|+++...
T Consensus 226 ~~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~-~~D~d~~~~la~L 300 (980)
T 3ibv_A 226 INLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQ-STDPNFDEHVAKL 300 (980)
T ss_dssp HHHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHH
T ss_pred HHhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 7754 5677878877754 47899999999999875421 111111111 01112222111 35666554222
Q ss_pred --HHHHHHHHh--Chh--------hhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH
Q 000941 276 --QALESFLLR--CPR--------DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1215)
Q Consensus 276 --~~l~~l~~~--~~~--------~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw 343 (1215)
.+.+.++.. .|. ...+++..+++.++.+..++ + |
T Consensus 301 ~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~------------------d--------------- 346 (980)
T 3ibv_A 301 INAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-Y------------------D--------------- 346 (980)
T ss_dssp HHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-S------------------H---------------
T ss_pred HHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-c------------------h---------------
Confidence 222333333 221 12267778888888888631 0 0
Q ss_pred HHHHHHHHHHHHHH------hh---CchhhHHHHHHHHHHHHhhhccc-----------ch-----hHHHHHHHHHHHHH
Q 000941 344 KVRRAAAKCLAALI------VS---RPEMLSKLYEEACPKLIDRFKER-----------EE-----NVKMDVFNTFIELV 398 (1215)
Q Consensus 344 kvR~~Aa~~L~~li------~~---~~~~l~~~~~~i~p~Li~~~~d~-----------e~-----~Vr~~~~~~l~~l~ 398 (1215)
.|-..+...+..++ .. .++.+.+++..+++.++.+++-+ ++ +.|..+. .+...+
T Consensus 347 eVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~ 425 (980)
T 3ibv_A 347 ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTI 425 (980)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHH
Confidence 00001111111111 11 24556678888888888775321 11 2344333 333333
Q ss_pred HHhcccCCCcCCCCCCChhhHHHH-HHHHHHHHHHHHh---cccChhhHHHHHHHHHHHHHhCchh------hhhhhhhh
Q 000941 399 RQTGNVTKGQIDNNELNPRWLLKQ-EVSKIVKSINRQL---REKSIKTKVGAFSVLRELVVVLPDC------LADHIGSL 468 (1215)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~L~~-~~p~i~~~l~~~L---~~~~~~~r~~~~~~l~~L~~~~~~~------l~~~~~~l 468 (1215)
...+ |. ...+ ....+.+.+...+ .+.+|+.+++++.+++.+++..+.. ..++++.+
T Consensus 426 ~~l~-------------~~-~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 426 NSID-------------SS-LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp HHHC-------------HH-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred HhcC-------------hH-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 3332 21 1122 1113333444444 2456899999999999999987542 12467778
Q ss_pred hHHHHHhhcCC---CCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHH--HhcCCchHHHHHHHHHHHHHHHhcc
Q 000941 469 IPGIEKSLNDK---SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA--AVGERYYKVTAEALRVCGELVRVLR 543 (1215)
Q Consensus 469 v~~l~~~l~d~---~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~--~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1215)
++.+...++.. ...+.++..++.+++...+--.. -..|++.+++.++. ++.++..+++..|..++..+++.++
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~--~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY--ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT--CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 87777766511 12267888899888887544221 12478888998888 8888888999999999999999885
Q ss_pred CCCcCCCCCChhcHHHHHHHHHHHhhccC-----CC--------------HHHHHHHHHHHHHHHHhccC---cccchhh
Q 000941 544 PSVEGLGFDFKPYVQPIYNAIMSRLTNQD-----QD--------------QEVKECAISCMGLVISTFGD---NLGAELP 601 (1215)
Q Consensus 544 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~d-----~~--------------~~Vr~~Ai~~lg~l~~~~~~---~l~~~~~ 601 (1215)
+ .+.||++.++..+-..+...- .+ .+-+-.-+.++|.++...+. .-..++.
T Consensus 570 ~-------~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 570 K-------QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp T-------TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred H-------HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4 578999999888776665211 10 11244578999999987653 1223555
Q ss_pred hhHHHHHHhh----ccc----hh--H-HHHHHHHHHHHcC--CCCC---chhHHHHHHHHHHHHHHH--HhhhHHHHHHH
Q 000941 602 ACLPVLVDRM----GNE----IT--R-LTAVKAFAVIAAS--PLHI---DLTCVLEHVIAELTAFLR--KANRALRQATL 663 (1215)
Q Consensus 602 ~~l~~L~~~L----~~e----~~--r-~~a~~al~~i~~s--~~~~---~~~~~l~~~l~~L~~~L~--~~~~~lr~~al 663 (1215)
.+++-+...+ +.. .. + ...+.+++.++.. ..+. .....+.++++.+...+. ..+..+|.++.
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555544433 211 11 1 1346677777731 1111 134456677777777776 35678999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhc
Q 000941 664 GTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1215)
Q Consensus 664 ~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1215)
.++..++...+.++. +.++.++..+....+ ..-..-.+.++++++..
T Consensus 723 ~~~~r~i~~lg~~~~-p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli~~ 769 (980)
T 3ibv_A 723 FTSGRIINVVGPDML-PKVPQLISILLNSID---MNELVDVLSFISQLIHI 769 (980)
T ss_dssp HHHHHHTTTTHHHHT-TTHHHHHHHHHHHCC---TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHhHH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 999999887765433 345555555543322 23334566777877764
No 40
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.55 E-value=1.4e-11 Score=162.61 Aligned_cols=496 Identities=12% Similarity=0.104 Sum_probs=285.5
Q ss_pred cCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-------cccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-------VAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-------~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
.+.++.+||.|+.-|++.+.+.|..++++....+.+.++..+.. +.+-||+....+++.++..--+..|+.++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 56788999999999999999988888888888888888887752 45789999999999999875557899999
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCc----hh-----hH---HHHHHhHhHHHHhhhhcc---------------
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTT----SS-----LA---QSIHTSLTPQLTKGITLK--------------- 139 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~----~~-----~~---~~~~~~l~p~L~~~l~~~--------------- 139 (1215)
+.|++.+.+ ++..++.+...|+.+++++.. .. +. ...+..+++.+.+.+++.
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~ 215 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES 215 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 999988865 445578899999999876321 01 10 111223444444444321
Q ss_pred --CCChhHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC--HH---H---H-H
Q 000941 140 --DMNTEIRCECLDILCDVLHKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS--DD---L---L-A 207 (1215)
Q Consensus 140 --~~~~~v~~~al~~L~~l~~~~g~~l-~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~---~---~-~ 207 (1215)
+.+..+...+++++...+.-....+ ......+++.++..+.+ +.+|..|+.||..++.... ++ + + .
T Consensus 216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~ 293 (1204)
T 3a6p_A 216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence 0012233344444432222111111 01112477877776654 5789999999999987442 22 1 1 1
Q ss_pred HHHHHHHHHhh--cCC--C--ChHHHHHHHHHHHHHHhhhhh--------hhccchhhhHHHHHHhhcccCCCcHHHHHH
Q 000941 208 KATIEVVRNLR--SKG--A--KPEMIRTNIQMVGALSRAVGY--------RFGPHLGDTVPVLIDYCTSASENDEELREY 273 (1215)
Q Consensus 208 ~l~~~ll~~l~--~~~--~--~~~~~~~~i~~l~~l~~~~~~--------~~~~~l~~iip~ll~~~~~~~~~d~elre~ 273 (1215)
..+..+++... ++. . +.+.++...+++..++...-. +..+++..+++.++.+.+ +++.++...
T Consensus 294 ~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~---~~~~~vs~~ 370 (1204)
T 3a6p_A 294 VAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTT---HPSQFLRSS 370 (1204)
T ss_dssp HHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHT---SSCHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHh---CccHHhHHH
Confidence 12334444432 111 1 123444555555555432211 245678899999999987 357778888
Q ss_pred HHHHHHHHHHhC----hhhhcccHHHHHHHH---HHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHH
Q 000941 274 SLQALESFLLRC----PRDISSYCDEILHLT---LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1215)
Q Consensus 274 al~~l~~l~~~~----~~~~~~~l~~ii~~~---l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR 346 (1215)
++..+..+++.. ...+.++++.+++.+ +.-++|+++... . +.....+|+|+++ |+++.-|..|
T Consensus 371 ~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~---~-~~~~~~~D~d~~~------E~~~~f~~~R 440 (1204)
T 3a6p_A 371 TQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS---P-SCEYSRFDFDSDE------DFNAFFNSSR 440 (1204)
T ss_dssp HHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS---T-HHHHHHHHCSSHH------HHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC---c-chhhhhcccCCcH------HHHHHHHHHH
Confidence 887777776542 235778999999998 445555432110 0 0000000000000 0011225666
Q ss_pred HHHHHHHHHHHhhCchhhHHH-HH--------------------------------------------------------
Q 000941 347 RAAAKCLAALIVSRPEMLSKL-YE-------------------------------------------------------- 369 (1215)
Q Consensus 347 ~~Aa~~L~~li~~~~~~l~~~-~~-------------------------------------------------------- 369 (1215)
+....++..+....|+..-.+ ..
T Consensus 441 k~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~ 520 (1204)
T 3a6p_A 441 AQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRT 520 (1204)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 655555444443332111000 00
Q ss_pred --------HHHHHHHhhh---cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc-
Q 000941 370 --------EACPKLIDRF---KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE- 437 (1215)
Q Consensus 370 --------~i~p~Li~~~---~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~- 437 (1215)
.+.|.|+..+ +..++.+|...+.+++++...... .| +++|.++..|...+.+
T Consensus 521 ~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-----------~p-----~~L~~vL~~ll~~l~~~ 584 (1204)
T 3a6p_A 521 LNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-----------RP-----EFLPQVFSKLFSSVTFE 584 (1204)
T ss_dssp SCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-----------CG-----GGHHHHHHHHHHHHHCC
T ss_pred cccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-----------Cc-----hHHHHHHHHHHHhhccC
Confidence 1122222221 122445555555555555443320 11 3567777777766655
Q ss_pred -----------cChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCC-CcchhHHHHHHHHHHHhccCCCCc-
Q 000941 438 -----------KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS-STSNLKIEALTFTRLVLSSHSPPV- 504 (1215)
Q Consensus 438 -----------~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~-~~~~~~~~al~~l~~l~~~~~~~~- 504 (1215)
.+..+|..|+..|..|+...+..|.+|+++|...+...+.... -...-+..-..++..+....++..
T Consensus 585 ~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~ 664 (1204)
T 3a6p_A 585 TVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYER 664 (1204)
T ss_dssp TTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHH
Confidence 1235889999999999999999999999999999988776432 222223333344444432223322
Q ss_pred chhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 505 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 505 ~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
...|+..+++++.+...++...- ++.-...++..+|-
T Consensus 665 ~~~~l~~ll~P~~~~w~~~~~~~---~~s~~~~f~~~~G~ 701 (1204)
T 3a6p_A 665 QKVFLEELMAPVASIWLSQDMHR---VLSDVDAFIAYVGT 701 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHH---HHHCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHccHHHHH---hhcCHHHHHHHhCC
Confidence 23479999999999987753322 34444455555543
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.7e-13 Score=147.71 Aligned_cols=194 Identities=16% Similarity=0.253 Sum_probs=164.1
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChh
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 417 (1215)
+|.+|+.|+.|+..|..++...|+.....+..+++.|..++ +|.+..||..++.+++.+++..+ +
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~-------------~- 90 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA-------------K- 90 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG-------------G-
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh-------------h-
Confidence 35679999999999999999866544445677888888889 59999999999999999998765 2
Q ss_pred hHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000941 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1215)
Q Consensus 418 ~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1215)
.+..+++.+++.+.+.+++++..+|.++..++..++... +++.++|.+...+++++ +.+|.+++.+++.++
T Consensus 91 -~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~~~--~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 91 -RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSNKN--PSVKSETALFIARAL 161 (242)
T ss_dssp -GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999998753 35778899999998765 789999999999998
Q ss_pred ccCCCC-cchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHH
Q 000941 498 SSHSPP-VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1215)
Q Consensus 498 ~~~~~~-~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1215)
..+++. .+.+|++.++|.+...++|+.++++..|..+++.++..++.. .+.+|++.+-
T Consensus 162 ~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~------~~~~~l~~L~ 220 (242)
T 2qk2_A 162 TRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK------AVTPLLADVD 220 (242)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH------HHGGGGTTSC
T ss_pred HHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH------HHHHHHHhcC
Confidence 887665 467899999999999999999999999999999999888642 3556655443
No 42
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.49 E-value=4.3e-09 Score=135.06 Aligned_cols=574 Identities=10% Similarity=0.088 Sum_probs=324.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh----ccCh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSE 79 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~----~~~~ 79 (1215)
..+..+++.+-+++.+.|..|..-|. .+++.. +.- .++..++. ++.++.||..|...|...+. .+++
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~-~~q~sp-----~aw-~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILT-KFQDNP-----DAW-QKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCT-----TGG-GGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH-HHHcCc-----cHH-HHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 46777888887777788888877774 444321 111 12222332 25578999999999998886 4777
Q ss_pred hhHHHHHHHHHHHhcCC--C-------cchhhHHHHHHHHHHhc-cCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNG--K-------DQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~--~-------~~~r~~a~~aL~~~i~~-~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
+....+-..|++.+... + .-++.--+.++..++.. .|. -+..+++.+++.++. ++......
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~------~Wp~~l~dL~~~l~~---~~~~~~~~ 157 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSS---SVNVCENN 157 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh------hchHHHHHHHHHhcC---CHHHHHHH
Confidence 77666666666665421 1 11223344444444432 221 245667777776653 24445555
Q ss_pred HHHHHHHHHHhhh----------------hhhhhHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHHH--HHHH
Q 000941 150 LDILCDVLHKFGN----------------LMSNDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDDLL--AKAT 210 (1215)
Q Consensus 150 l~~L~~l~~~~g~----------------~l~~~~~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~ 210 (1215)
+.+|..+.+..+. .+....+.+.+.+...+.+ .++.+.+.++.|++.+..-++-..+ ..++
T Consensus 158 L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll 237 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHH
Confidence 6666555554322 1233456666666666654 3457889999999998877765542 3466
Q ss_pred HHHH-HHhhcCCCChHHHHHHHHHHHHHHhh-h-hh--hhccchhhhHHHHHHhh---------------cccCCCcHHH
Q 000941 211 IEVV-RNLRSKGAKPEMIRTNIQMVGALSRA-V-GY--RFGPHLGDTVPVLIDYC---------------TSASENDEEL 270 (1215)
Q Consensus 211 ~~ll-~~l~~~~~~~~~~~~~i~~l~~l~~~-~-~~--~~~~~l~~iip~ll~~~---------------~~~~~~d~el 270 (1215)
+.++ ..+.+ ++.|..+++|+..++.. . +. ++...+..+++..+..+ ...+++|.+.
T Consensus 238 ~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~ 313 (1023)
T 4hat_C 238 ELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF 313 (1023)
T ss_dssp HHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHH
T ss_pred HHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHH
Confidence 7777 55542 36888999999999862 2 22 23333332322222211 1112345555
Q ss_pred HHHHHHHHHHHHHhChhhh------cccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHH
Q 000941 271 REYSLQALESFLLRCPRDI------SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1215)
Q Consensus 271 re~al~~l~~l~~~~~~~~------~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swk 344 (1215)
.+.....+..+......-+ .+++...+..++....++ | |.
T Consensus 314 ~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-------d---------------------------~e 359 (1023)
T 4hat_C 314 LQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-------E---------------------------RE 359 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-------C---------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-------c---------------------------HH
Confidence 4444444444444333222 233332333444432211 0 01
Q ss_pred HHHHHHHHHHHHHh------hCchhhHHHHHHHHHHHHhhhcccch---------hH-H--------HHHHHHHHHHHHH
Q 000941 345 VRRAAAKCLAALIV------SRPEMLSKLYEEACPKLIDRFKEREE---------NV-K--------MDVFNTFIELVRQ 400 (1215)
Q Consensus 345 vR~~Aa~~L~~li~------~~~~~l~~~~~~i~p~Li~~~~d~e~---------~V-r--------~~~~~~l~~l~~~ 400 (1215)
+=+.+..-+..+.. .+.+.+.++|..+.+.++.++.-+++ ++ | .+.++.+...+..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111111111 12356678888999999988743320 00 0 1223233222222
Q ss_pred hcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc--cChhhHHHHHHHHHHHHHhCchh-hhhhhhhhhHHHHHhhc
Q 000941 401 TGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSLN 477 (1215)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~--~~~~~r~~~~~~l~~L~~~~~~~-l~~~~~~lv~~l~~~l~ 477 (1215)
.. .. .-.+.++.+++.+.+.+.+ .+|..+++++.+++.+++...+. ..++++.++|.+...+.
T Consensus 440 l~-------------~l-~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~ 505 (1023)
T 4hat_C 440 LT-------------HL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV 505 (1023)
T ss_dssp HH-------------HH-CHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-------------cc-CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh
Confidence 10 00 0023445556666666654 57999999999999998876543 66799999999998776
Q ss_pred CCCC-cc--hhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCC-cCCCCCC
Q 000941 478 DKSS-TS--NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSV-EGLGFDF 553 (1215)
Q Consensus 478 d~~~-~~--~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~ 553 (1215)
++.. ++ .++..++.++|...+-.. .-..|++.++..+..++.++.++++..|..++..+++.++..- .......
T Consensus 506 ~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 4321 12 244455566665533211 1124789999999999988888999999999999988764321 0012345
Q ss_pred hhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcc--cchhhhhHHHHHHhhcc--------------ch--
Q 000941 554 KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL--GAELPACLPVLVDRMGN--------------EI-- 615 (1215)
Q Consensus 554 ~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l--~~~~~~~l~~L~~~L~~--------------e~-- 615 (1215)
.||+..++..+.+... ..+..-+..++.++|.++...+... ..++..+++.+...++. +.
T Consensus 584 ~p~~~~il~~l~~~~~--~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 661 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTA--DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV 661 (1023)
T ss_dssp SCHHHHHHHTHHHHHT--TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred chhHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHH
Confidence 6899999888777665 4467777899999999999887532 22555555544433211 10
Q ss_pred hH-HHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHH
Q 000941 616 TR-LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLR 652 (1215)
Q Consensus 616 ~r-~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~ 652 (1215)
.+ ..-++++..++.+ .+..+.|++..+.+.+....+
T Consensus 662 ~~l~~il~~~~~v~~~-lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 662 KIIANIIKTNVAVCTS-MGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp HHHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHH
Confidence 11 1225555555533 344566777777776655443
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.3e-13 Score=146.81 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=163.5
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhcc-ccCCCChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccCh---hhH
Q 000941 8 AILEKITGKDKDFRYMATSDLLNELNK-ESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSE---PRV 82 (1215)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~-~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~---~~~ 82 (1215)
.+++++.|.|++.|.+|+..|...+.. +.+. .....++++.+.+.+. |+|..||..|.+|++.++..++. .++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~--~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE--NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC--CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 578889999999999999999999886 3332 2234688999999995 99999999999999999987665 678
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 000941 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~ 162 (1215)
..+++.|+..+.+.+..+|+.+..+|.++++..+ .+.++|.++..+++. ++.+|..++..|+.++..+++
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--------LEAQQESIVESLSNK--NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999888999999999999997654 356888999998875 589999999999999998864
Q ss_pred --hhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 000941 163 --LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1215)
Q Consensus 163 --~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1215)
.+.++++.+++.+...+.++.+.||+.|..+++.++..++.+.+..+
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~ 215 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL 215 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34678999999999999999999999999999999999998654443
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.46 E-value=3.6e-11 Score=149.65 Aligned_cols=476 Identities=10% Similarity=0.074 Sum_probs=305.6
Q ss_pred hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHH
Q 000941 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 127 ~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
..+|.|+..+.+. ++.++..|+.+|+.+.........- ..+..++.++..|.+. ++.+|+.|+.+|..++......
T Consensus 14 g~i~~Lv~lL~~~--~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTHHHHHHHHTCS--CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred chHHHHHHHHcCC--CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 3567777777654 6899999999999998765422111 1245677777777754 6789999999999877542211
Q ss_pred --HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHH
Q 000941 205 --LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALES 280 (1215)
Q Consensus 205 --~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1215)
++ ...++.+++.+++++ ..++..++.++..++...+....... ...+|.+++.+.. .+.+++..+..++..
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---CCHHHHHHHHHHHHH
Confidence 11 237788888887764 47888999999999986533222222 5689999999983 567888888888988
Q ss_pred HHHhChhhhcccH-HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh
Q 000941 281 FLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1215)
Q Consensus 281 l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~ 359 (1215)
++...++.-.... ...++.++++++.. ...+++..++.+|..+..
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~---------------------------------~~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTY---------------------------------TYEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTC---------------------------------CCHHHHHHHHHHHHHHTT-
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcC---------------------------------ChHHHHHHHHHHHHHHhc-
Confidence 8865543211111 23466666666410 012678888888887764
Q ss_pred CchhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhccc
Q 000941 360 RPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK 438 (1215)
Q Consensus 360 ~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~ 438 (1215)
.++.-..+. ...+|.|++.+++.+..++..++.++..+.+.... . .....+++.+.+.+.+.
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~--------------~~~~~~i~~Lv~lL~~~ 275 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---Q--------------EGMEGLLGTLVQLLGSD 275 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---C--------------CSCHHHHHHHHHHTTCS
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---h--------------hhhhhHHHHHHHHHcCC
Confidence 333222222 24678888888888889999988888888653210 0 01224566677778888
Q ss_pred ChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCc-chh-h-hhhhHH
Q 000941 439 SIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV-FHP-Y-IKALSS 514 (1215)
Q Consensus 439 ~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~-~~~-~-l~~l~p 514 (1215)
++.+|..++.+|..|+...+..-.. .-...++.+...+.+......++..++.+++.+...++... .+. . -...+|
T Consensus 276 d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~ 355 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence 8899999999999997643221111 11235677777776543335788999999999975433211 111 1 235688
Q ss_pred HHHHHhcCCc-hHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH-HHHHHHHHHhhcc--------------------C
Q 000941 515 PVLAAVGERY-YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQ--------------------D 572 (1215)
Q Consensus 515 ~l~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~--------------------d 572 (1215)
.+...+.+.. ..++.+|+.++++++.. +. .....+. ..++.+++.+... .
T Consensus 356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~ 427 (644)
T 2z6h_A 356 VVVKLLHPPSHWPLIKATVGLIRNLALC--PA------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427 (644)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTS--GG------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred HHHHHhCccCchHHHHHHHHHHHHHccC--HH------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence 8888888664 68999999999888642 10 0011111 2344444444321 1
Q ss_pred CCHHHHHHHHHHHHHHHHhccCcccch--hhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHH--HHHHH
Q 000941 573 QDQEVKECAISCMGLVISTFGDNLGAE--LPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLE--HVIAE 646 (1215)
Q Consensus 573 ~~~~Vr~~Ai~~lg~l~~~~~~~l~~~--~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~--~~l~~ 646 (1215)
.+.++++.|+.+++.++... ..... -...++.|++.+++ +.++..|+.+|..++..+ +....+. ..++.
T Consensus 428 ~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~---~~~~~i~~~g~l~~ 502 (644)
T 2z6h_A 428 RMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAP 502 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH---HHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH---HHHHHHHHcCChhH
Confidence 23678888888888776432 11111 23457778777754 457888999999887421 1222222 24567
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 000941 647 LTAFLRKANRALRQATLGTMNSLVVAY 673 (1215)
Q Consensus 647 L~~~L~~~~~~lr~~al~~L~~l~~~~ 673 (1215)
|..++.+.+..+|..+..+|..+....
T Consensus 503 L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 503 LTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 788888899999999999999986543
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.45 E-value=6.2e-11 Score=144.37 Aligned_cols=471 Identities=13% Similarity=0.084 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChh--hH--HHHHHHHHHHhcCC-CcchhhHHHHHHHHHHhccCc
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP--RV--VEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTT 117 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~--~~--~~lv~~L~~~~~~~-~~~~r~~a~~aL~~~i~~~~~ 117 (1215)
.....++.+.++|++++++||..|+++|+.+...-... .+ ...++.|...+.++ +.+.+..++.+|+.+...-
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-- 91 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-- 91 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--
Confidence 34567899999999999999999999999998532211 11 24677777777544 6677888888888865431
Q ss_pred hhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 000941 118 SSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIA 195 (1215)
Q Consensus 118 ~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~ 195 (1215)
.....+. ...+|.|++.+.+. ++.++..++.+|..+.......-.. .....++.++..+.++++.++..+..+|.
T Consensus 92 -~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 92 -EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp -HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred -hhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222 24789999988875 5899999999999998764432211 13457888889999888899999999999
Q ss_pred HHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHH
Q 000941 196 SLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEE 269 (1215)
Q Consensus 196 ~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~e 269 (1215)
.++...++. +. ...++.+++.+++.+. ...+..+..++..++.... ....+ ...+|.+++.+. +.+.+
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~---~~~~~ 242 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLT---DPSQR 242 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTT---SSCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHh---CCChH
Confidence 887532221 11 2356777777776653 3455566777777765221 12222 357888888887 45789
Q ss_pred HHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHH
Q 000941 270 LREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAA 349 (1215)
Q Consensus 270 lre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~A 349 (1215)
+++.+.+++..++...+.. .....+++.+.+++. + .++.+|..|
T Consensus 243 ~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~-~---------------------------------~~~~v~~~a 286 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG-S---------------------------------DDINVVTCA 286 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT-C---------------------------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc-C---------------------------------CCHHHHHHH
Confidence 9999999999998765532 234577788877773 1 014789999
Q ss_pred HHHHHHHHhhCchhhHHHHH-HHHHHHHhhhccc--chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--
Q 000941 350 AKCLAALIVSRPEMLSKLYE-EACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-- 424 (1215)
Q Consensus 350 a~~L~~li~~~~~~l~~~~~-~i~p~Li~~~~d~--e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-- 424 (1215)
+.+|..+....++....+.+ ..+|.|++.+.+. ++.||..++.+++.+..... .....+..+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~-------------~~~~~~~~i~~ 353 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-------------EAEMAQNAVRL 353 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-------------THHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc-------------hHHHHHHHHHH
Confidence 99999997655544333332 3567777777542 36899998888887743210 000111111
Q ss_pred HHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhCchhhhhh-hhhhhHHHHHhhcCCC--------------------Cc
Q 000941 425 SKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADH-IGSLIPGIEKSLNDKS--------------------ST 482 (1215)
Q Consensus 425 p~i~~~l~~~L~~~~-~~~r~~~~~~l~~L~~~~~~~l~~~-~~~lv~~l~~~l~d~~--------------------~~ 482 (1215)
...++.+.+.+.+.+ +.++..++.+++.++... ...... -..++|.+...+.+.+ ..
T Consensus 354 ~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~ 432 (529)
T 1jdh_A 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432 (529)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCH
T ss_pred cCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccH
Confidence 123566667777765 578999999999987532 111111 1235666666655321 01
Q ss_pred chhHHHHHHHHHHHhccCCCCcchhh--hhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHH--
Q 000941 483 SNLKIEALTFTRLVLSSHSPPVFHPY--IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ-- 558 (1215)
Q Consensus 483 ~~~~~~al~~l~~l~~~~~~~~~~~~--l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~-- 558 (1215)
..++..++..+..+... + ..... -...+|.++..+.+...+++..|..++..+... + .....+.
T Consensus 433 ~~i~~~~~~al~~L~~~--~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~-------~~~~~i~~~ 500 (529)
T 1jdh_A 433 EEIVEGCTGALHILARD--V-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-------EAAEAIEAE 500 (529)
T ss_dssp HHHHHHHHHHHHHHTTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--H-------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC--c-hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--H-------HHHHHHHHc
Confidence 12333445555555432 1 11111 124678888889998889999998888877521 0 0111111
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000941 559 PIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 559 ~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l 588 (1215)
..++.+...+. +.+.+||+.|..++..+
T Consensus 501 ~~~~~L~~l~~--~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 501 GATAPLTELLH--SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TCHHHHHHGGG--CSSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHhc--CCCHHHHHHHHHHHHhc
Confidence 12334444443 66899999999988764
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.42 E-value=4.4e-11 Score=143.94 Aligned_cols=399 Identities=12% Similarity=0.129 Sum_probs=267.1
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccC-CCChHHHHHHHHHHHHhccC-cccchhHHHHHHHHHHhhccChhh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
..|..++..++|.|++.++-|+..+++.|+++.. -.+.=....+++.|+++|.. .++++|..|+.+|+.++..-++ +
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e-~ 135 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-Q 135 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH-H
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-H
Confidence 3578899999999999999999999999987532 11222333489999999974 5689999999999999864332 2
Q ss_pred HH-----HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH-hHhHHHHhhhhccCC---ChhHHHHHHHH
Q 000941 82 VV-----EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDM---NTEIRCECLDI 152 (1215)
Q Consensus 82 ~~-----~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~---~~~v~~~al~~ 152 (1215)
.. ..++.|+..+.+++.++|+.++.||..+..+.+. ....+.+ -.+|.|+..+...+. ...+...+..+
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~--~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA--FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 22 2578889988888889999999999999865432 2222222 356777777765321 12345566667
Q ss_pred HHHHHHHhhhhhh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHH
Q 000941 153 LCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMI 227 (1215)
Q Consensus 153 L~~l~~~~g~~l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~ 227 (1215)
+..+...-..... .....+++.+...+.+++..++..|+.+|+.++....+.. -..+++.+++.+.+++ ..++
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~ 291 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIV 291 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC--hhhh
Confidence 7766654322221 2446788889999999999999999999999986543321 1246778888887765 3688
Q ss_pred HHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhc
Q 000941 228 RTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLS 305 (1215)
Q Consensus 228 ~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~ 305 (1215)
..++.+++.++...+..-...+ ...+|.+...+. ..++++|+.+.+++..++...+....... ..+++.+...++
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~ 368 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc---CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc
Confidence 8899999998765432211111 234555556665 46789999999999999876664333322 246677777664
Q ss_pred cCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-chhhHHHH-HHHHHHHHhhhcccc
Q 000941 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLY-EEACPKLIDRFKERE 383 (1215)
Q Consensus 306 ~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~~~l~~~~-~~i~p~Li~~~~d~e 383 (1215)
. .++++|+.|+.+|..+.... ++....+. ..+++.|++.++..+
T Consensus 369 ~----------------------------------~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 369 K----------------------------------ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp S----------------------------------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred C----------------------------------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 1 12589999999999988653 44433322 346788888888888
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHH--HHHHHHHHHhcccChhhHHHHHHHHHHHH
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVS--KIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p--~i~~~l~~~L~~~~~~~r~~~~~~l~~L~ 454 (1215)
..++..++.++..+++..... +....+...+. ..++.|......++..++..|+.++....
T Consensus 415 ~~i~~~~L~aL~nil~~~~~~----------~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 415 TKIIQVILDAISNIFQAAEKL----------GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----------TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhHhc----------cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999999998888753210 00011111111 12344555555667777777776665543
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.42 E-value=9.1e-11 Score=142.91 Aligned_cols=467 Identities=11% Similarity=0.031 Sum_probs=294.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccC-cccchhHHHHHHHHHHhhccChhhHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
.+..++.-+++.|+++|..|+.-|.+....+..+..--.....++.+++.|.+ ++.++|..|..+|..+... ++...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~ 95 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHH
Confidence 46777788889999999999999877654321100000113578888888864 5889999999999998753 11111
Q ss_pred -----HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 84 -----EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 84 -----~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
..++.|...+.+++++.+..+..+|..++..-+. ....+. ...+|.|++.+.+. ++.++..++.+|..+.
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 3577888888887888889999999998865432 222222 45789999988875 5788888888888776
Q ss_pred HHhhhhhhh-hHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHH--HH-HHHHHHHHHHhhcCCCChHHHHHHHH
Q 000941 158 HKFGNLMSN-DHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD--LL-AKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1215)
Q Consensus 158 ~~~g~~l~~-~~~~ll~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~--~~-~~l~~~ll~~l~~~~~~~~~~~~~i~ 232 (1215)
......-.. .....++.++..+.+++. .++..+..+|..++..-... +. ...++.++..+.+++ .+.++.++.
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~--~~~~~~a~~ 249 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLW 249 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC--HHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC--hHHHHHHHH
Confidence 422111000 011234555555554443 56777888888887533222 11 246777887777653 478888999
Q ss_pred HHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCCC
Q 000941 233 MVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFT 311 (1215)
Q Consensus 233 ~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~ 311 (1215)
+++.+++..+.. .....++|.+++.+. ++++++|+.+.+++..++...++....+. ...++.+++.+...
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~---- 320 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---- 320 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH----
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc----
Confidence 999999865432 245688999999887 57899999999999999776543222222 13455666665310
Q ss_pred CCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchh--h-HHH-HHHHHHHHHhhhcccc-hhH
Q 000941 312 DNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM--L-SKL-YEEACPKLIDRFKERE-ENV 386 (1215)
Q Consensus 312 ~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~--l-~~~-~~~i~p~Li~~~~d~e-~~V 386 (1215)
+..|.+|..|+.+|+.+....|+. . ..+ -...+|.|++.+++.. +.+
T Consensus 321 ----------------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 321 ----------------------------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp ----------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred ----------------------------CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 012689999999999997665532 1 111 2235788888887765 689
Q ss_pred HHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHH----------------------
Q 000941 387 KMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV---------------------- 444 (1215)
Q Consensus 387 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~---------------------- 444 (1215)
|..++.++..+..... ....+.+ ..+++.+...+.+.++.+|.
T Consensus 373 ~~~a~~~l~nl~~~~~-------------~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~ 437 (529)
T 1jdh_A 373 IKATVGLIRNLALCPA-------------NHAPLRE--QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437 (529)
T ss_dssp HHHHHHHHHHHTTSGG-------------GHHHHHH--TTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHH
T ss_pred HHHHHHHHHHHhcChh-------------hhHHHHH--cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHH
Confidence 9998888777753211 1111111 12334444444444444443
Q ss_pred HHHHHHHHHHHhCchhhhhh--hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhh--hhhHHHHHHHh
Q 000941 445 GAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAV 520 (1215)
Q Consensus 445 ~~~~~l~~L~~~~~~~l~~~--~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~l~p~l~~~l 520 (1215)
.++.+|..++.. +.. ... -...++.+...+.+.. ..++..+...+..+... + .....+ ...++.+...+
T Consensus 438 ~~~~al~~L~~~-~~~-~~~l~~~~~v~~l~~ll~~~~--~~v~~~a~~~l~~l~~~--~-~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 438 GCTGALHILARD-VHN-RIVIRGLNTIPLFVQLLYSPI--ENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHTTS-HHH-HHHHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTS--H-HHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHhcC-chH-HHHHhccCCccHHHHHHcCCc--hHHHHHHHHHHHHHhcC--H-HHHHHHHHcCChHHHHHHh
Confidence 344444444321 110 011 1234677778887754 67888888888887532 1 111111 24567777888
Q ss_pred cCCchHHHHHHHHHHHHH
Q 000941 521 GERYYKVTAEALRVCGEL 538 (1215)
Q Consensus 521 ~d~~~~v~~~al~~l~~l 538 (1215)
.+++..++..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 888889998888877654
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.42 E-value=4.7e-10 Score=137.29 Aligned_cols=483 Identities=11% Similarity=0.090 Sum_probs=297.1
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
..++.-|.+.|...|.|+-.-+...... +++...-++..+.+-|+|||+.+|..|.++++.+.. ++..+.++
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~-----~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~ 148 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNS-----NSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFA 148 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHH
Confidence 4556667788888888777666555432 456667788999999999999999999999999853 55677888
Q ss_pred HHHHHHh--cCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 000941 87 DKLCIKL--LNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1215)
Q Consensus 87 ~~L~~~~--~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l 164 (1215)
+.+...+ .+.++.+|.-|++|+..++...|. .... ..+++.+.+.|.+. ++.|+..|+.++.++...-+..+
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~--~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPM--GDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCC--CSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCc--hhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHhChHHH
Confidence 8888888 778889999999999999875442 1110 14666777777664 68999999999999998877665
Q ss_pred hhhHHHHHHHHhhhhcCC-------------hHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCC---C---
Q 000941 165 SNDHERLLSALLPQLSAN-------------QASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKG---A--- 222 (1215)
Q Consensus 165 ~~~~~~ll~~ll~~l~~~-------------~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~---~--- 222 (1215)
.+..+.+.+.+...+... ++-.+-..+..++.++..-..+. +.++++.++..+.+.. .
T Consensus 223 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 223 KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 556666666555444321 34566666666666554322332 3334455554433211 0
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh--hhhcccHHHHHHHH
Q 000941 223 KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP--RDISSYCDEILHLT 300 (1215)
Q Consensus 223 ~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~--~~~~~~l~~ii~~~ 300 (1215)
.+......+++...+....+ ..+++...+..+...+. ..+.++|-.++.++..++...| ..+.+|.+.++.
T Consensus 303 ~n~~~aVl~ea~~~i~~l~~--~~~~~~~~~~~L~~~L~---~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~-- 375 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHDS--EPNLLVRACNQLGQFLQ---HRETNLRYLALESMCTLASSEFSHEAVKTHIETVIN-- 375 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHSS---CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHH--
T ss_pred cchHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHH--
Confidence 00011123444444444322 23456677777777776 4688999999999999988776 345555555444
Q ss_pred HHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhc
Q 000941 301 LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK 380 (1215)
Q Consensus 301 l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~ 380 (1215)
.++||+ | ..||+.+..++..+... + -.+.++..|.+.+.
T Consensus 376 --~L~~d~-------------------------------d--~~Ir~~aL~lL~~l~~~--~----Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 376 --ALKTER-------------------------------D--VSVRQRAVDLLYAMCDR--S----NAQQIVAEMLSYLE 414 (621)
T ss_dssp --HHTTCC-------------------------------C--HHHHHHHHHHHHHHCCH--H----HHHHHHHHHHHHHH
T ss_pred --HhccCC-------------------------------C--HhHHHHHHHHHHHHcCh--h----hHHHHHHHHHHHHH
Confidence 333221 1 26899999998887643 2 33445555555566
Q ss_pred ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh
Q 000941 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC 460 (1215)
Q Consensus 381 d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~ 460 (1215)
+.+.+.|..++.+++.+.....+ ....+ +..+.+.+......+...++..+..++...|.
T Consensus 415 ~~d~~~~~~~v~~I~~la~k~~~---------------~~~~~----v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~- 474 (621)
T 2vgl_A 415 TADYSIREEIVLKVAILAEKYAV---------------DYTWY----VDTILNLIRIAGDYVSEEVWYRVIQIVINRDD- 474 (621)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCS---------------STHHH----HHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS-
T ss_pred hcCHHHHHHHHHHHHHHHHhcCC---------------cHHHH----HHHHHHHHHhhcccchHHHHHHHHHHHhCChh-
Confidence 67788888888888887654321 11223 33344444433333445556666666654443
Q ss_pred hhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCC-CcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 461 LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 461 l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
+..+ .+..+...+.++.....+...++.++|........ ....| ..++..+...+.+....++...+.++..+.
T Consensus 475 ~~~~---~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 475 VQGY---AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLCSVPTRALLLSTYIKFV 549 (621)
T ss_dssp CHHH---HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 2222 34455566666543333333444566655321110 00111 133445555666677789989988888876
Q ss_pred HhccCCCcCCCCCChhcHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHH
Q 000941 540 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN-QDQDQEVKECAISCMGLV 588 (1215)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~-~d~~~~Vr~~Ai~~lg~l 588 (1215)
... |-+.+.+..+++.... .+.+.+||++|...+.-+
T Consensus 550 ~~~------------p~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 550 NLF------------PEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHC------------GGGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHC------------hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 432 1233444444554443 377899999999886544
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.42 E-value=7.4e-11 Score=142.92 Aligned_cols=399 Identities=13% Similarity=0.125 Sum_probs=269.7
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCC-CChHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHhhccChhh
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFK-ADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~-~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
..+..++..+.|.|++.++-|+..+++.|+++... .+.-....+++.|+++|. +.++++|..|+.+|+.++..-++..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999999764321 222334458899999996 5678999999999999986433321
Q ss_pred --H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH-hHhHHHHhhhhccCC---ChhHHHHHHHHH
Q 000941 82 --V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDM---NTEIRCECLDIL 153 (1215)
Q Consensus 82 --~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~---~~~v~~~al~~L 153 (1215)
+ ...++.|+..+.+++.++++.++.||..++.+.+ .....+.+ -.+|.|+..+..... ...+...+..++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~--~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS--AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 1 1357888888888888999999999999886543 22222322 356788887765321 123455566677
Q ss_pred HHHHHHhhhhhh-hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHHH
Q 000941 154 CDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIR 228 (1215)
Q Consensus 154 ~~l~~~~g~~l~-~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~ll~~l~~~~~~~~~~~ 228 (1215)
..+......... .....+++.+...+.++++.++..|+.+|+.++....+.. -..+++.+++.+.+++ ..++.
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~ 311 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIVT 311 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC--hhHHH
Confidence 766554333222 2446788889999999999999999999999987543331 1346778888887765 36888
Q ss_pred HHHHHHHHHHhhhhhhhccc-hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH-HHHHHHHHHhcc
Q 000941 229 TNIQMVGALSRAVGYRFGPH-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSY 306 (1215)
Q Consensus 229 ~~i~~l~~l~~~~~~~~~~~-l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~-~ii~~~l~~l~~ 306 (1215)
.++.+++.++...+..-... -...+|.+...+. ..++++|..+.+++..++...+.......+ .+++.+...+..
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 89999999986543221111 1345677777776 467899999999999998776643333222 366666666641
Q ss_pred CCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHH-HHHHHHHHhhhcccch
Q 000941 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLY-EEACPKLIDRFKEREE 384 (1215)
Q Consensus 307 dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~-~~i~p~Li~~~~d~e~ 384 (1215)
.++++|+.|+.+|..+... .++....+. ..++|.|++.++..+.
T Consensus 389 ----------------------------------~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 389 ----------------------------------ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp ----------------------------------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 1258999999999998865 344443333 3467888888888889
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHH--HHHHHHHHHhcccChhhHHHHHHHHHHH
Q 000941 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVS--KIVKSINRQLREKSIKTKVGAFSVLREL 453 (1215)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p--~i~~~l~~~L~~~~~~~r~~~~~~l~~L 453 (1215)
.++..++.++..+++..... +....+...+. ..++.|......++..++..|+.++...
T Consensus 435 ~i~~~~L~aL~nil~~~~~~----------~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKL----------GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----------TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhc----------cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999998888653210 00011111111 1134444445566777787777776654
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.1e-11 Score=130.79 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=163.4
Q ss_pred CccHHHHHHHHHHHHH-HHhhCchhh--HHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHHHHHhc-ccCCCcCCCCCC
Q 000941 340 DASWKVRRAAAKCLAA-LIVSRPEML--SKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTG-NVTKGQIDNNEL 414 (1215)
Q Consensus 340 d~swkvR~~Aa~~L~~-li~~~~~~l--~~~~~~i~p~Li~~~-~d~e~~Vr~~~~~~l~~l~~~~~-~~~~~~~~~~~~ 414 (1215)
+..|+-|++|...|.. +++..|+.. ..-|..++..|.+.+ +|.+..||..++.+++.+.+..+ .
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~----------- 95 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP----------- 95 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT-----------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc-----------
Confidence 4569999999999999 987766544 334456677777788 89999999999999999997664 2
Q ss_pred ChhhHHH-HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh--hhhhhhHHHHHhhcCCCCcchhHHHHHH
Q 000941 415 NPRWLLK-QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD--HIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1215)
Q Consensus 415 ~~~~~L~-~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~--~~~~lv~~l~~~l~d~~~~~~~~~~al~ 491 (1215)
.+. .+...+++.+...++++...+|.++..++..++...++ ... +++.+++.+...+++++ +.+|.+++.
T Consensus 96 ----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~--~~vk~~al~ 168 (249)
T 2qk1_A 96 ----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKT--PQIRMECTQ 168 (249)
T ss_dssp ----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSS--HHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCC--hHHHHHHHH
Confidence 345 67888899999999999999999999999999987644 223 38899999999998774 789999999
Q ss_pred HHHHHhccCCC--Ccchhhh-hhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHH
Q 000941 492 FTRLVLSSHSP--PVFHPYI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1215)
Q Consensus 492 ~l~~l~~~~~~--~~~~~~l-~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1215)
++..++...+. ..+.+|+ +.++|.+..++.|....++..|..+++.+++.+|.. .+.||++.+
T Consensus 169 ~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~------~~~p~l~~L 234 (249)
T 2qk1_A 169 LFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN------TFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG------GGHHHHHHS
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH------HHHHHHHHH
Confidence 99999987653 4577899 999999999999999999999999999999988652 477777665
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.31 E-value=8.6e-10 Score=132.68 Aligned_cols=397 Identities=13% Similarity=0.089 Sum_probs=245.9
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
+.|...+.+++.+.+--|..+++.+.+.-..++. ..+.+ -++|.|++.|...+ ++.++.+|..+|+.++......-.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3344445555555555666677766542211111 22232 37899999997654 688999999999999754333211
Q ss_pred h-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHH
Q 000941 166 N-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAK---PEMIRTNIQMVGAL 237 (1215)
Q Consensus 166 ~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~---~~~~~~~i~~l~~l 237 (1215)
. .....++.++..|.+++..+|+.|+.+|+.++...+.. .. ...++.++..+..++.. ....+.+..++..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 1 12235788888899999999999999999998654332 11 23567788877765421 23455667777777
Q ss_pred Hhhhhh-hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCCCCCCC
Q 000941 238 SRAVGY-RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNME 315 (1215)
Q Consensus 238 ~~~~~~-~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d 315 (1215)
++.... .-......++|.+.+.+. .++++++..+.+++..++...+....... ..+++.+.+++..
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--------- 285 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--------- 285 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---------
T ss_pred hhcccchhHHHHHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---------
Confidence 764321 111234678999998887 57889999999999988765543221111 1245555555531
Q ss_pred CCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHH
Q 000941 316 EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTF 394 (1215)
Q Consensus 316 ~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l 394 (1215)
.++.++..|+.+++.+....++....+. ...+|.|+..+++.++.+|..++.++
T Consensus 286 -------------------------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 286 -------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred -------------------------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 1258999999999998866554333222 34567777777888899999998888
Q ss_pred HHHHHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHH
Q 000941 395 IELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPG 471 (1215)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~ 471 (1215)
..+.... + ......+ ..+++.+...+.+.+..+|..|..+|..++......-..++ ...++.
T Consensus 341 ~nl~a~~--------------~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~ 405 (510)
T 3ul1_B 341 SNITAGR--------------Q-DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 405 (510)
T ss_dssp HHHTTSC--------------H-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHH
T ss_pred HHHHcCc--------------H-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence 8775321 1 1111111 24566777778888889999999999999875322111111 235677
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHhccCCCC-cchhh---hhh--hHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSPP-VFHPY---IKA--LSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~---l~~--l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
+...|..+. +.++..++..|..+++..... ...++ +.. .+..+.....+++..|...|+..+..++
T Consensus 406 L~~LL~~~d--~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 406 LMNLLSAKD--TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHGGGCSC--HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCC--HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 778787543 678888888888877532110 11111 111 1233333333556677777877776664
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.1e-11 Score=130.67 Aligned_cols=202 Identities=15% Similarity=0.159 Sum_probs=164.7
Q ss_pred HHHHHhcCCCcchhhhhHHHHHH-Hhccc-cCCCChHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHHhhccC-h----
Q 000941 8 AILEKITGKDKDFRYMATSDLLN-ELNKE-SFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVS-E---- 79 (1215)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~-~l~~~-~~~~~~~~~~~i~~~ll~~L-~D~~~~Vq~~A~~~l~~l~~~~~-~---- 79 (1215)
.+.+++.|.++..|..|+..|.. .++.. .+.........+++.|.+.+ +|+|..||..|++|++.++..++ +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45677899999999999999999 77542 12110223357899999999 79999999999999999998776 2
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1215)
.+...+++.++..+.+.+..+++.+..||.++++.+++ .....+++.+++.|+.+++++ ++.+|..++..|+.++..
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH
Confidence 56778899999999888888999999999999988753 110012567888999999876 589999999999999999
Q ss_pred hh---hhhhhhH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 000941 160 FG---NLMSNDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIE 212 (1215)
Q Consensus 160 ~g---~~l~~~~-~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ 212 (1215)
.+ ..+.+++ +.+++.+.+.+.++++.||+.|+.|++.+...+|+..+...++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88 4577899 99999999999999999999999999999999988755554443
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.30 E-value=8.8e-09 Score=126.03 Aligned_cols=459 Identities=11% Similarity=0.106 Sum_probs=286.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccc
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~ 248 (1215)
......+...+.++++.+|.-|+.+++.+. ..++.+.+++.+.+.+.+.+.++-+|+.|+.++..+.+..|..+.+
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~- 185 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM- 185 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-
Confidence 445667788899999999999999999885 4668888999999998322223579999999999999987765442
Q ss_pred hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccch
Q 000941 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1215)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d 328 (1215)
+..++.+.+.+. |.|..++.+|+.++..++...|+.+.++++.++..+.+++.. +.+.. . |
T Consensus 186 -~~~~~~l~~lL~---d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~-~-------------~ 246 (621)
T 2vgl_A 186 -GDWTSRVVHLLN---DQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTS-ASTDL-Q-------------D 246 (621)
T ss_dssp -CSCHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHC-CSSSC-S-------------T
T ss_pred -hhHHHHHHHHhC---CCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhC-CCCCc-c-------------c
Confidence 466777777776 578899999999999999999988889999999888777631 10000 0 0
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHHHHHhh-CchhhHHHHHHHHHHHHhh---------hcccch--hHHHHHHHHHHH
Q 000941 329 DESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDR---------FKEREE--NVKMDVFNTFIE 396 (1215)
Q Consensus 329 ~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~-~~~~l~~~~~~i~p~Li~~---------~~d~e~--~Vr~~~~~~l~~ 396 (1215)
+ .|.. -...|- +-...+++..+... .|+....++ .+++.++.+ ++.++. .|..++++++..
T Consensus 247 -~---~~~~-~~~~w~-qi~il~ll~~~~~~~d~~~~~~l~-~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~ 319 (621)
T 2vgl_A 247 -Y---TYYF-VPAPWL-SVKLLRLLQCYPPPEDPAVRGRLT-ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIH 319 (621)
T ss_dssp -T---EETT-EESHHH-HHHHHHHGGGSSSCSSHHHHHHHH-HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -h---hhcC-CCCchH-HHHHHHHHHHhCCCCCHHHHHHHH-HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHh
Confidence 0 0000 001352 22222222222111 122111122 222223222 222333 666666666554
Q ss_pred HHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhh
Q 000941 397 LVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSL 476 (1215)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l 476 (1215)
+- . . .+.....++.+.+.+.++++.+|..++..+..++...|. .+.+....+.+..++
T Consensus 320 l~----~-----------~-----~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 320 HD----S-----------E-----PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINAL 377 (621)
T ss_dssp HC----C-----------C-----HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHH
T ss_pred cC----C-----------c-----HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHh
Confidence 41 0 0 233456667777888878888999999999999877652 122334445566677
Q ss_pred c-CCCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChh
Q 000941 477 N-DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP 555 (1215)
Q Consensus 477 ~-d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 555 (1215)
. |.. ..+|..++.++..++.. ..+..|+..+...+.+.+...+.+++..++.++....+ .+.-
T Consensus 378 ~~d~d--~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~-------~~~~ 441 (621)
T 2vgl_A 378 KTERD--VSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV-------DYTW 441 (621)
T ss_dssp TTCCC--HHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS-------STHH
T ss_pred ccCCC--HhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-------cHHH
Confidence 6 543 67999999998888643 24788888888888877778888898888888866532 4555
Q ss_pred cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccchhH----HHHHHHHHHHHcCC
Q 000941 556 YVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITR----LTAVKAFAVIAASP 631 (1215)
Q Consensus 556 ~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e~~r----~~a~~al~~i~~s~ 631 (1215)
|++.++..+-. . ...+.+.++..+-.++...++ +. ...+..+++.+.+...+ ..++|.+|+-+..-
T Consensus 442 ~v~~Ll~ll~~----~--~~~v~~ev~~~l~~ii~~~~~-~~---~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~ 511 (621)
T 2vgl_A 442 YVDTILNLIRI----A--GDYVSEEVWYRVIQIVINRDD-VQ---GYAAKTVFEALQAPACHENLVKVGGYILGEFGNLI 511 (621)
T ss_dssp HHHHHHHHHHH----H--GGGSCSHHHHHHHHHHGGGCS-CH---HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHh----h--cccchHHHHHHHHHHHhCChh-HH---HHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHh
Confidence 66666554322 1 122455556667766655432 22 23455566666655433 34558898875210
Q ss_pred CC-CchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcC--CCChhhHHHHHHHH
Q 000941 632 LH-IDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS--DSDLHMTALALELC 708 (1215)
Q Consensus 632 ~~-~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~d~~~~~~al~~l 708 (1215)
.. ....| .+++..+..-+...+..+|...+.++.++....+. ..+.+...+..... +.|..+++-|...+
T Consensus 512 ~~~~~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~ 584 (621)
T 2vgl_A 512 AGDPRSSP--LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYL 584 (621)
T ss_dssp HSSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHH
T ss_pred cccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 00 00111 13344444444566788999999999999876542 22333333333444 78899998888877
Q ss_pred HHHh
Q 000941 709 CTLM 712 (1215)
Q Consensus 709 ~~l~ 712 (1215)
.-+.
T Consensus 585 ~Ll~ 588 (621)
T 2vgl_A 585 RLST 588 (621)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6653
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.28 E-value=1.9e-09 Score=130.39 Aligned_cols=399 Identities=13% Similarity=0.089 Sum_probs=250.5
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhh
Q 000941 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~ 165 (1215)
++.+...+.+++.+.+--+..+++.+...-..+....-+-.-++|.|++.|...+ ++.++.+|+.+|+.+.......-.
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455555666666666667777777664222212222222358899999997654 688999999999999765433211
Q ss_pred h-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHH
Q 000941 166 N-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAK---PEMIRTNIQMVGAL 237 (1215)
Q Consensus 166 ~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~---~~~~~~~i~~l~~l 237 (1215)
. .....++.++..+.+++..+|+.|+.+|+.++...+.. +. ...++.++..+..+... ....+.+..++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 1 22346788888999999999999999999998653322 11 23567778877654421 23455667777777
Q ss_pred Hhhhhh-hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHHHHhccCCCCCCCCC
Q 000941 238 SRAVGY-RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNME 315 (1215)
Q Consensus 238 ~~~~~~-~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d 315 (1215)
++.... .-......++|.+...+. ..+++++..+.+++..++...+....... ..+++.+..++..
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--------- 304 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--------- 304 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC---------
T ss_pred HhcccchhhHHHHhhHHHHHHHHhc---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC---------
Confidence 764321 111234678999998887 57889999999999988876543221111 2345555555531
Q ss_pred CCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHH-HHHHHHHHHhhhcccchhHHHHHHHHH
Q 000941 316 EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL-YEEACPKLIDRFKEREENVKMDVFNTF 394 (1215)
Q Consensus 316 ~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~-~~~i~p~Li~~~~d~e~~Vr~~~~~~l 394 (1215)
.++.|+..|+.+++.++...++.-..+ -...++.|+..+++.++.+|..++.++
T Consensus 305 -------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 305 -------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred -------------------------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 125899999999999986655433322 234667777778888899999999888
Q ss_pred HHHHHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHH
Q 000941 395 IELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPG 471 (1215)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~ 471 (1215)
..+.... + ......+ ..+++.+...+.+.+..+|..|..+|..++......-..++ ...++.
T Consensus 360 ~nl~~~~--------------~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~ 424 (529)
T 3tpo_A 360 SNITAGR--------------Q-DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP 424 (529)
T ss_dssp HHHHTSC--------------H-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred HHHhccc--------------H-HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHH
Confidence 8876421 1 1111111 23566677778888889999999999999865322111122 235777
Q ss_pred HHHhhcCCCCcchhHHHHHHHHHHHhccCCC-Ccchhh---hhh--hHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 000941 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHPY---IKA--LSSPVLAAVGERYYKVTAEALRVCGELV 539 (1215)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~---l~~--l~p~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1215)
+...|..+. +.++..++..|..++..... ....++ +.. .+..+.....+.+..|...|+..+..++
T Consensus 425 L~~LL~~~d--~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 425 LMNLLSAKD--TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHGGGCSC--HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCC--HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 888887543 67777888888887643211 011111 111 1222222223556678888887777664
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.12 E-value=3.8e-06 Score=107.21 Aligned_cols=524 Identities=12% Similarity=0.125 Sum_probs=270.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHhhhh----cC-----ChHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQL----SA-----NQASVRKKSVSCIASLASSLSDDLLAKATI 211 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~-~~~~~ll~~ll~~l----~~-----~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~ 211 (1215)
++.+|.-|+.+|...+.+.-..+. .....+.+.++..+ .+ +++.++.+-..+++.++...-.+.|.++++
T Consensus 74 ~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~ 153 (1073)
T 3gjx_A 74 NMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFIS 153 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHH
Confidence 345555555555555554333332 22333333333333 12 234667788888888887643334666777
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhhh----------------hhhccchhhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVG----------------YRFGPHLGDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~----------------~~~~~~l~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
.+++.+..+ ...+..++..+..+.+... ..+...++.+++.+...++. ..++++...++
T Consensus 154 dLv~~~~~~---~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~--~~~~~lv~~~L 228 (1073)
T 3gjx_A 154 DIVGASRTS---ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN--SQNAPLVHATL 228 (1073)
T ss_dssp HHHHHHHHC---HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHhCCC---HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHH
Confidence 777766532 2455667777777776532 13445567777777776654 35778888899
Q ss_pred HHHHHHHHhChhhhcccHHHHHHHH-HHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHH
Q 000941 276 QALESFLLRCPRDISSYCDEILHLT-LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLA 354 (1215)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~-l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~ 354 (1215)
+++..++...|-..- .-+.+++.+ ..++. +-++|.+|+.||.
T Consensus 229 ~~L~~~~sWI~i~~i-~~~~ll~~L~~~~L~------------------------------------~~~~r~aA~dcL~ 271 (1073)
T 3gjx_A 229 ETLLRFLNWIPLGYI-FETKLISTLIYKFLN------------------------------------VPMFRNVSLKCLT 271 (1073)
T ss_dssp HHHHHHTTTSCTHHH-HSSSHHHHHHHHTSS------------------------------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHh-ccchHHHHHHHHhcC------------------------------------ChHHHHHHHHHHH
Confidence 999988877652210 002455544 34442 0168999999999
Q ss_pred HHHhhCc----hhhHHHHHHHHHHHHh----------hh--cccch-hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChh
Q 000941 355 ALIVSRP----EMLSKLYEEACPKLID----------RF--KEREE-NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1215)
Q Consensus 355 ~li~~~~----~~l~~~~~~i~p~Li~----------~~--~d~e~-~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 417 (1215)
.++.... +.+..+|..++..+.. .+ .+.++ +.-......+.++++..... .+..|
T Consensus 272 eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~l-------Ie~~p- 343 (1073)
T 3gjx_A 272 EIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQL-------LEKRL- 343 (1073)
T ss_dssp HHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHH-------HHHCG-
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH-------HhcCc-
Confidence 9987532 3334455554432211 11 11111 22122233333333321100 00001
Q ss_pred hHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC----c------------------h---hhhhhhhhhhHHH
Q 000941 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL----P------------------D---CLADHIGSLIPGI 472 (1215)
Q Consensus 418 ~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~----~------------------~---~l~~~~~~lv~~l 472 (1215)
.+.+.+-..+..+..+-.-++..+-..++.....|...+ + . .+.+.+..++..+
T Consensus 344 -~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vl 422 (1073)
T 3gjx_A 344 -NLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLM 422 (1073)
T ss_dssp -GGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 112222333344444443444455566676655444321 1 0 0334455555555
Q ss_pred HHhhcCCCC-----------------cch------hHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc--CCchHH
Q 000941 473 EKSLNDKSS-----------------TSN------LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG--ERYYKV 527 (1215)
Q Consensus 473 ~~~l~d~~~-----------------~~~------~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~--d~~~~v 527 (1215)
..-+.-+.. +.+ ..-+++.++..+. + ..-+..+++.+...+. ...|..
T Consensus 423 I~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~----~---~~~~~i~~~~l~~~~~~~~~sW~~ 495 (1073)
T 3gjx_A 423 VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLD----Y---VDTEIIMTKKLQNQVNGTEWSWKN 495 (1073)
T ss_dssp HHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHC----H---HHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred HHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCC----H---HHHHHHHHHHHHHHhcCCCCCHHH
Confidence 555442210 000 0112222222211 0 1224455566655554 345777
Q ss_pred HHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHHHHhccCcccchhhhhH
Q 000941 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ---DQEVKECAISCMGLVISTFGDNLGAELPACL 604 (1215)
Q Consensus 528 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~---~~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l 604 (1215)
...++.+++.++..+.+. .-.+++.++++.++........ ..-++...++.+|.....+..
T Consensus 496 lea~~~aigaIag~~~~~------~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~---------- 559 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEE------DEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA---------- 559 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHH------HHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH----------
T ss_pred HhHHHHHHHHHHCcCCcc------cccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh----------
Confidence 777788887776544321 1246788888888876643211 122344444566654332210
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCC------
Q 000941 605 PVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIG------ 678 (1215)
Q Consensus 605 ~~L~~~L~~e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~------ 678 (1215)
+ .++++.++..|..++..++..++.+|..|+..+...++..+.
T Consensus 560 ----------------------------h---~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e 608 (1073)
T 3gjx_A 560 ----------------------------H---WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGE 608 (1073)
T ss_dssp ----------------------------C---HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTC
T ss_pred ----------------------------C---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1 456667777777777777788889999999999988876542
Q ss_pred -cchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCch--hhhhhhhhHHHHHHHhhhcc---------cch--
Q 000941 679 -ASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV--GLAVRNKVLPQALALIKSSL---------LQG-- 744 (1215)
Q Consensus 679 -~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~--~~~~~~~~l~~l~~ll~s~~---------l~~-- 744 (1215)
.+++++++..+......=+..-.....+++|.++.. .|.. ...+...+++....-+++-. +..
T Consensus 609 ~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~---~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~ 685 (1073)
T 3gjx_A 609 VMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA---QTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE 685 (1073)
T ss_dssp SSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH
Confidence 245677776665555554555566788899999985 5542 23344444444443332111 111
Q ss_pred --hhhHHHHHHHHHHHhhcCCChHHHHHHHh
Q 000941 745 --QALVALQSFFAALVYSANTSFDTLLDSLL 773 (1215)
Q Consensus 745 --~~l~~l~~~~~~l~~~~~~~~~~l~~~ll 773 (1215)
..+..++.+...++.+.+..|.+.+..+.
T Consensus 686 ~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~ 716 (1073)
T 3gjx_A 686 TVKQLGSILKTNVRACKAVGHPFVIQLGRIY 716 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHhhcchhHHHHHHHHH
Confidence 12233444444555555666655554443
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.12 E-value=1.2e-05 Score=98.89 Aligned_cols=324 Identities=14% Similarity=0.139 Sum_probs=189.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcC---CCChhhHHHHHHHHHHHhhcccCCCchhhhh
Q 000941 649 AFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS---DSDLHMTALALELCCTLMADKRSSPNVGLAV 725 (1215)
Q Consensus 649 ~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~ 725 (1215)
+.+.++....+..+..+|+.|-... .+..+..+.+.+. +++.+++.-++-.+|-+... ..
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~--------~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag------~~--- 427 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGN--------LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG------FG--- 427 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSC--------TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT------TT---
T ss_pred hhhhccchHHHHHHHHHhhhhccCc--------hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC------Cc---
Confidence 3455565566788888888764322 1234666667775 56777888888888877543 11
Q ss_pred hhhhHHHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCChHHHHHHHhccCCCCCCCcchhhhhhhhHHHHHHHHHhhcC
Q 000941 726 RNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAG 805 (1215)
Q Consensus 726 ~~~~l~~l~~ll~s~~l~~~~l~~l~~~~~~l~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~ 805 (1215)
..++..|...+.++. ...+++. ........+-.+|.+..+++
T Consensus 428 -~~~~~lL~~~L~~~~-----------------------------------~~~~~~~--~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 428 -RDTTDYLKNIIVENS-----------------------------------GTSGDED--VDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp -HHHHHHHHHHHHHHS-----------------------------------SCCSCHH--HHHHHHHHHHHHHHHSTTCC
T ss_pred -HHHHHHHHHHHcCcc-----------------------------------ccccccc--cHHHHHHHHHHHHHHhcCCC
Confidence 122222222222110 0000000 00111123344555544443
Q ss_pred CcchhhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHh-cCCCchhHhhHHHHHHHhhhhcCcccc
Q 000941 806 DQKCSSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIES-FQSPFEEIKSAASYALGNIAVGNLSKF 884 (1215)
Q Consensus 806 ~~~~~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~-l~~~~e~vR~aAa~aLG~l~~~~~~~~ 884 (1215)
.. .+.+.+.+.+.++....+..|..+||-+....+- .+....++.. .++.++++|+.++.+||.+..|+.. .
T Consensus 470 ~e---ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e-~ 542 (963)
T 4ady_A 470 NI---EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE-L 542 (963)
T ss_dssp CH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG-G
T ss_pred CH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH-H
Confidence 32 3445555555543332356777788876332221 3445555554 3566899999999999999888754 4
Q ss_pred hHHHHHHhhcc--cchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCCcc
Q 000941 885 LPFILDQIDNQ--QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKL 962 (1215)
Q Consensus 885 lp~il~~l~~~--~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~~ 962 (1215)
.|.+++.+... +-.||....++.- ..++...... ++.++..+.. +.++++|+.|+.+||.+...+++.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~algl--AyaGTGn~~a----Iq~LL~~~~~---d~~d~VRraAViaLGlI~~g~~e~- 612 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIAL--AYAGTGNNSA----VKRLLHVAVS---DSNDDVRRAAVIALGFVLLRDYTT- 612 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHH--HTTTSCCHHH----HHHHHHHHHH---CSCHHHHHHHHHHHHHHTSSSCSS-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--HhcCCCCHHH----HHHHHHHhcc---CCcHHHHHHHHHHHHhhccCCHHH-
Confidence 67788887754 3447765555432 2222111111 2334333333 456789999999999999988875
Q ss_pred hHHHHH-hhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchh
Q 000941 963 VPALKV-RTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLL 1041 (1215)
Q Consensus 963 lp~l~~-~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l 1041 (1215)
.|.+.+ +..+.++.+|+.+.-++.-+....+. ...+..+.....|+|..||+.|+.+|+.+..-..+...|.+
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv 686 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV 686 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH
Confidence 455555 44678899999999899865544432 23445445567899999999999999998765555545555
Q ss_pred hhhhHHHHH
Q 000941 1042 PELLPLLYD 1050 (1215)
Q Consensus 1042 ~~llp~l~~ 1050 (1215)
.+++..|..
T Consensus 687 a~~l~~L~~ 695 (963)
T 4ady_A 687 ADINKNFLS 695 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.06 E-value=5.9e-09 Score=114.94 Aligned_cols=252 Identities=11% Similarity=0.061 Sum_probs=174.4
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHH
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~ 126 (1215)
.++.++..|+|+++.||..|+.+|+.+.. +..++.|...+.++++.+|..+..+|..+-.. + .. ..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~--~~----~~ 89 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-K--KC----ED 89 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-T--TT----HH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-c--cc----ch
Confidence 56788899999999999999999998752 35677777778788888899888888764311 1 11 23
Q ss_pred hHhHHHHhh-hhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH
Q 000941 127 SLTPQLTKG-ITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL 205 (1215)
Q Consensus 127 ~l~p~L~~~-l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1215)
.+++.|.+. +.+. ++.||..++.+|+.+....+ .+.+..++.+...+.++++.||..|+.+|+.++..
T Consensus 90 ~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 90 NVFNILNNMALNDK--SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-----
Confidence 345555432 3333 68999999999998754332 23456778888889999999999999999987641
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 206 ~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
..++.++..+.+++ ..+|..++.+++.+.. .-+.++|.++..++ +++.++|..+..++..+-
T Consensus 159 --~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~--------~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 159 --ATIPLLINLLKDPN--GDVRNWAAFAININKY--------DNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp --CCHHHHHHHHTCSS--HHHHHHHHHHHHHHTC--------CCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTT---
T ss_pred --HHHHHHHHHHcCCC--HHHHHHHHHHHHhhcc--------CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhC---
Confidence 25667777777665 3788899999887631 23567788888886 578999999998887653
Q ss_pred hhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhH
Q 000941 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1215)
Q Consensus 286 ~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~ 365 (1215)
. +..++.+++.++ | |.||+.|+.+|+.+-. +
T Consensus 221 ~-------~~~~~~L~~~l~-d-----------------------------------~~vr~~a~~aL~~i~~--~---- 251 (280)
T 1oyz_A 221 D-------KRVLSVLCDELK-K-----------------------------------NTVYDDIIEAAGELGD--K---- 251 (280)
T ss_dssp C-------GGGHHHHHHHHT-S-----------------------------------SSCCHHHHHHHHHHCC--G----
T ss_pred C-------HhhHHHHHHHhc-C-----------------------------------ccHHHHHHHHHHhcCc--h----
Confidence 1 234555555553 0 1268899999887632 2
Q ss_pred HHHHHHHHHHHhhhcc-cchhHHHHHHHHH
Q 000941 366 KLYEEACPKLIDRFKE-REENVKMDVFNTF 394 (1215)
Q Consensus 366 ~~~~~i~p~Li~~~~d-~e~~Vr~~~~~~l 394 (1215)
.++|.|.+.+++ .+++++..++..+
T Consensus 252 ----~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 252 ----TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ----GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ----hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 345666666643 3455665555443
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.06 E-value=5.2e-09 Score=130.17 Aligned_cols=303 Identities=15% Similarity=0.214 Sum_probs=235.2
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccC-----h
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS-----E 79 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~-----~ 79 (1215)
.+..++.++...+++-|.-|...+.+.+.......+-. ..++..+.+.+.|+..- ..|...++.+....+ +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 35567778877778888889899988887542111112 37999999999998554 888888988885443 3
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1215)
.++..+++.++..+.+....+|..|..|+.+++..+++. . .+.++|.|+..|.... -|..+..|++++..+.+.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~-a----~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-A----IKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG-G----HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH-H----HHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHH
Confidence 455566788888887877889999999999999988862 1 3788999999997653 599999999999999999
Q ss_pred hhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 000941 160 FGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 160 ~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
.+..+....+.+++.+...+-|..+.|++.|..++..++..+++.-+...+|.+++.+.+|+ ++ ..+++.+++.--
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~---~~-~~~~~~l~~~tf 240 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT---EV-PETVHLLGATTF 240 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT---HH-HHHHHHHTTCCC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh---hh-HHHHHHhhcCee
Confidence 98888889999999999999999999999999999999999988878889999999999874 22 334444443221
Q ss_pred hhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHh--ChhhhcccHHHHHHHHHHHhccCCCCCCCCCCC
Q 000941 240 AVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR--CPRDISSYCDEILHLTLEYLSYDPNFTDNMEED 317 (1215)
Q Consensus 240 ~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~--~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d 317 (1215)
.. .-=.|-|.-++|.+...+. +....++.-+....+++++- .|.+..||+|.++|.+.+...-
T Consensus 241 v~-~v~~~~l~~~~p~l~r~l~---~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~----------- 305 (986)
T 2iw3_A 241 VA-EVTPATLSIMVPLLSRGLN---ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT----------- 305 (986)
T ss_dssp CS-CCCHHHHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT-----------
T ss_pred Ee-eecchhHHHHHHHHHhhhc---cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc-----------
Confidence 11 2225578889999999997 34566666777788888774 5789999999999998775420
Q ss_pred cccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHh
Q 000941 318 SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358 (1215)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~ 358 (1215)
-....+|..|.+++.++..
T Consensus 306 ----------------------~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 306 ----------------------IADPEAREVTLRALKTLRR 324 (986)
T ss_dssp ----------------------CCSHHHHHHHHHHHHHHHH
T ss_pred ----------------------cCCHHHHHHHHHHHHHHHH
Confidence 0014789999999988854
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.04 E-value=1.2e-07 Score=118.21 Aligned_cols=291 Identities=12% Similarity=0.175 Sum_probs=217.6
Q ss_pred cchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHH
Q 000941 98 DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN--LMSNDHERLLSAL 175 (1215)
Q Consensus 98 ~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~--~l~~~~~~ll~~l 175 (1215)
.+.+..++.++..++.+-....... ..++..+..++.+++ +. +.|+.++..+++.+|. .+.++.-.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~-~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 100 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP---EHFFGELAKGIKDKK-TA---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAI 100 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC---HHHHHHHHHHHTSHH-HH---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc---hhHHHHHHHHHhccC-CH---HHHHHHHHHHHHhcCCCCCcccchHHHHHHH
Confidence 3445566666766665321101111 145556666666643 22 8999999999988865 4567777789999
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhhhhhhccchhhhHH
Q 000941 176 LPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSK-GAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVP 254 (1215)
Q Consensus 176 l~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip 254 (1215)
+..+.|....||+.|..++..++..++......++|.++..+.+. .| +.+..++.+++.+++.+|..++.+++.++|
T Consensus 101 ~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw--~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p 178 (986)
T 2iw3_A 101 CTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKW--QEKIAILAAFSAMVDAAKDQVALRMPELIP 178 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHHhHHHHHHhccchhc
Confidence 999999889999999999999999999887788999999999766 45 788899999999999999999999999999
Q ss_pred HHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh-hhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcC
Q 000941 255 VLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1215)
Q Consensus 255 ~ll~~~~~~~~~d~elre~al~~l~~l~~~~~-~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~ 333 (1215)
.+.+++- |.-.|++..+..++..++.... .++.||+|.++..+. +|.
T Consensus 179 ~~~~~~~---d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~-----~p~------------------------ 226 (986)
T 2iw3_A 179 VLSETMW---DTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA-----DPT------------------------ 226 (986)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH-----CTT------------------------
T ss_pred chHhhcc---cCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc-----Chh------------------------
Confidence 9999987 6789999999999999887654 489999999888762 331
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhhC-c-hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCC
Q 000941 334 EYTDDEDASWKVRRAAAKCLAALIVSR-P-EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411 (1215)
Q Consensus 334 ~~~dd~d~swkvR~~Aa~~L~~li~~~-~-~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~ 411 (1215)
+| -+|+..+..+. - +.-.+-+..+.|.|...+++|.-.++..++-....+++-..
T Consensus 227 ----------~~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~--------- 283 (986)
T 2iw3_A 227 ----------EV----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE--------- 283 (986)
T ss_dssp ----------HH----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC---------
T ss_pred ----------hh----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC---------
Confidence 12 23455554442 1 22345677888999888999988777666555556555432
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcc-cChhhHHHHHHHHHHHHHh
Q 000941 412 NELNPRWLLKQEVSKIVKSINRQLRE-KSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 412 ~~~~~~~~L~~~~p~i~~~l~~~L~~-~~~~~r~~~~~~l~~L~~~ 456 (1215)
.|. ....++|.+++.+.+.... ..+.+|..|-.++..|...
T Consensus 284 ---~~~-~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 284 ---DPQ-VIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp ---CHH-HHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred ---CHH-HHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 243 5688999999999987754 4567888888888877654
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.00 E-value=2.3e-05 Score=96.47 Aligned_cols=295 Identities=14% Similarity=0.099 Sum_probs=193.2
Q ss_pred hHHHHHHHHhcCC-C-ch-hhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCc--------hhHhhHHHHHHHhhhhc
Q 000941 811 STVKMLTDILKDD-S-ST-NSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF--------EEIKSAASYALGNIAVG 879 (1215)
Q Consensus 811 ~~l~~~~~~l~~~-~-~~-~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~--------e~vR~aAa~aLG~l~~~ 879 (1215)
+.+..+.+++... + +. .+.-|+..||-++.... .+....+...+.+++ +.+|.+|+.+||.+..|
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 3455555555422 2 22 37889999998866553 235666677675444 77999999999998876
Q ss_pred Ccc-cchHHHHHHhhccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhcccc
Q 000941 880 NLS-KFLPFILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALI 957 (1215)
Q Consensus 880 ~~~-~~lp~il~~l~~~~-~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~ 957 (1215)
.-. ..++.+.+.+..++ ..++....||+-+...++. .. .++.+++.+.. +.++.+|+.++.+||.+...
T Consensus 468 S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~----ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 468 SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PE----AIHDMFTYSQE---TQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HH----HHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HH----HHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCC
Confidence 543 45666777766543 2355666677766443321 12 23455554443 44578999999999999888
Q ss_pred CCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHh-ccCCChHHHHHHHHHHHHHHhcCccc
Q 000941 958 EPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLML-IKDQDRHVRRAAVLALSTFAHNKPNL 1036 (1215)
Q Consensus 958 ~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~-l~D~d~~Vr~~a~~~L~~~~~~~p~~ 1036 (1215)
.++..=+.+..+..+.++..|+.++.++.-...+.++ ...+..+|.. ..|++.+||+.|+.+|+-++-..|+.
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 8776544444444578899999988887755555543 1234555553 35888899999999999876555543
Q ss_pred ccchhhhhhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCC-cch
Q 000941 1037 IKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYD 1115 (1215)
Q Consensus 1037 i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~d 1115 (1215)
.|.++..+.. +....+|..|.-++.-+. .+.. ..+.+ +.+..-+.| +.+
T Consensus 613 --------v~rlv~~L~~-----------------~~d~~VR~gAalALGli~---aGn~-~~~ai-d~L~~L~~D~d~~ 662 (963)
T 4ady_A 613 --------VPRIVQLLSK-----------------SHNAHVRCGTAFALGIAC---AGKG-LQSAI-DVLDPLTKDPVDF 662 (963)
T ss_dssp --------HHHHTTTGGG-----------------CSCHHHHHHHHHHHHHHT---SSSC-CHHHH-HHHHHHHTCSSHH
T ss_pred --------HHHHHHHHHh-----------------cCCHHHHHHHHHHHHHhc---cCCC-cHHHH-HHHHHHccCCCHH
Confidence 2323322211 233679999988877652 2222 23444 344555778 888
Q ss_pred hHhhHHHHHHHHHhhChhhHHHhHHHhhHHHHhhhcccC
Q 000941 1116 VKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKP 1154 (1215)
Q Consensus 1116 i~~~~~~~l~~l~~~~p~~~~~~l~~l~~~l~~~l~~k~ 1154 (1215)
||..+...|+.+.........+++.++...|.+...+|.
T Consensus 663 Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 663 VRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 999999999999988888777778888888888776554
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.00 E-value=8.5e-09 Score=111.59 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=173.5
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhccChhh--H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHH
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~--~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~ 122 (1215)
.++.+++.|.++++++|..|+.+|+.++..-++.. + ...++.|+..+.+++.+.|..++.+|..+....+ ....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HHHH
Confidence 46788999999999999999999999986533211 1 1468888888888888889999999998875432 2222
Q ss_pred HHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 000941 123 SIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1215)
Q Consensus 123 ~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1215)
.+.+ ..+|.|+..+.+. ++.++..++.+|+.+.......... .....++.++..+.++++.+|+.|+.+|+.++..
T Consensus 81 ~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2332 4788898888864 6899999999999997543332211 1234678888889998999999999999999875
Q ss_pred cCHH--H--HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 201 LSDD--L--LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 201 ~~~~--~--~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
.+.. . -...++.+++.+.+++ ..++..++.+++.++...+....... ..++|.+++.+. +.++++|+.+.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~ 233 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT---STDSEVQKEAQ 233 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC---CCcHHHHHHHH
Confidence 4332 1 1347888888888654 47889999999999975443322221 457889998887 46789999999
Q ss_pred HHHHHHHHhChhhhcc
Q 000941 276 QALESFLLRCPRDISS 291 (1215)
Q Consensus 276 ~~l~~l~~~~~~~~~~ 291 (1215)
.++..+....+....+
T Consensus 234 ~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 234 RALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHHTCBCCC--
T ss_pred HHHHHHHcCCCccccc
Confidence 9999999877654443
No 62
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.00 E-value=4.3e-09 Score=113.92 Aligned_cols=238 Identities=16% Similarity=0.166 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhH--
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV-- 82 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~-- 82 (1215)
.|..+++.+.+.|+++|..|+.-|.+......-....-....+++.+++.|++++.+||..|+.+|+.+...-++...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 467889999999999999999999887765321111112235889999999999999999999999999864222111
Q ss_pred --HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHH
Q 000941 83 --VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1215)
Q Consensus 83 --~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~ 159 (1215)
...++.|+..+.+++++.|..++.+|..++...+ .....+. ...+|.|++.+.+. ++.++..++.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG 158 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC
Confidence 1357888888888888889999999999885332 2222222 34788999888875 589999999999999765
Q ss_pred hhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH--H--HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 000941 160 FGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--L--AKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1215)
Q Consensus 160 ~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l 234 (1215)
....... .....++.+...+.++++.+|+.|+.+|+.++...+... + ...++.+++.+.+++ .+.++.++.++
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~L 236 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD--SEVQKEAQRAL 236 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc--HHHHHHHHHHH
Confidence 4332211 224577888888998889999999999999987433321 1 346788888887654 47899999999
Q ss_pred HHHHhhhhhhhccc
Q 000941 235 GALSRAVGYRFGPH 248 (1215)
Q Consensus 235 ~~l~~~~~~~~~~~ 248 (1215)
+.++...+..+.+|
T Consensus 237 ~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 237 ENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHTCBCCC---
T ss_pred HHHHcCCCcccccc
Confidence 99999776654443
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.97 E-value=1.2e-08 Score=112.38 Aligned_cols=238 Identities=12% Similarity=0.006 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
.+..+++.+.+.|+.+|..|+.-|.+.- + ...++.++.+|+|+++.||..|+.+|+.+.. ....+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------G----QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------C----chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 5678888899999999999998886542 1 3578889999999999999999999998753 2334556
Q ss_pred HHHHHHH-HhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 85 MTDKLCI-KLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 85 lv~~L~~-~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
+++.|.. ...++++.+|..+..+|..+....+. ....++|.|...+.+. ++.||..++.+|+.+- .
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~----~- 157 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDK--STNVRRATAFAISVIN----D- 157 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcC----C-
Confidence 6666653 34567778899999999887643321 1345677888888765 6899999999998652 2
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1215)
+..++.+...+.++++.||..|+.+|+.+... +. ..++.++..+.+++ ..+|..++.+++.+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~----~~~~~L~~~l~d~~--~~vR~~A~~aL~~~~~---- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS----DIRDCFVEMLQDKN--EEVRIEAIIGLSYRKD---- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH----HHHHHHHHHTTCSC--HHHHHHHHHHHHHTTC----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH----HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCC----
Confidence 23456677778899999999999999988522 22 35666777777654 4788888888887741
Q ss_pred hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhc
Q 000941 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1215)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~ 305 (1215)
+..+|.++..++ + +++|..+..++..+-. +..++.+.+++.
T Consensus 222 ------~~~~~~L~~~l~---d--~~vr~~a~~aL~~i~~----------~~~~~~L~~~l~ 262 (280)
T 1oyz_A 222 ------KRVLSVLCDELK---K--NTVYDDIIEAAGELGD----------KTLLPVLDTMLY 262 (280)
T ss_dssp ------GGGHHHHHHHHT---S--SSCCHHHHHHHHHHCC----------GGGHHHHHHHHT
T ss_pred ------HhhHHHHHHHhc---C--ccHHHHHHHHHHhcCc----------hhhhHHHHHHHh
Confidence 356777777776 2 3388888888876521 245566666664
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.91 E-value=1.1e-08 Score=110.65 Aligned_cols=225 Identities=16% Similarity=0.155 Sum_probs=166.8
Q ss_pred HHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH-----HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHH
Q 000941 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV-----EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1215)
Q Consensus 48 ~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~-----~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~ 122 (1215)
.+.+.+.|.++++++|..|+++|..++.. .++... ..++.|+..+.+++++.|..++.+|..++.+.+ ....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~ 90 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQ 90 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHH
Confidence 56777888999999999999999877654 332222 356888888888888889999999998876433 2223
Q ss_pred HHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 000941 123 SIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1215)
Q Consensus 123 ~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1215)
.+.+ ..+|.|+..+.+. ++.++..++.+|+.+.......... .....++.++..+.++++.+|+.|+.+|+.++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3333 3789999988875 5899999999999996654433111 2335778888999999999999999999999975
Q ss_pred cCHHH---H-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch-hhhHHHHHHhhcccCCCcHHHHHHHH
Q 000941 201 LSDDL---L-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSL 275 (1215)
Q Consensus 201 ~~~~~---~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l-~~iip~ll~~~~~~~~~d~elre~al 275 (1215)
.+... . ...++.+++.+.+++ ..++..++.+++.++...+......+ ..++|.+++.+. +.++++|+.|.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~A~ 243 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS---HENEKIQKEAQ 243 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSS--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT---CSSSHHHHTHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC---CCCHHHHHHHH
Confidence 43321 1 356888888888764 47889999999999865544333333 347888888887 46789999999
Q ss_pred HHHHHHH
Q 000941 276 QALESFL 282 (1215)
Q Consensus 276 ~~l~~l~ 282 (1215)
.++..++
T Consensus 244 ~~L~~l~ 250 (252)
T 4db8_A 244 EALEKLQ 250 (252)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9887664
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.90 E-value=7.1e-09 Score=112.31 Aligned_cols=230 Identities=16% Similarity=0.137 Sum_probs=167.4
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh--
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR-- 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~-- 81 (1215)
+....+...+.+.|+++|..|+..|.+.+.........-....+++.+++.|.+++++||..|+.+|+.++...++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 346778899999999999999999988887522111112233578999999999999999999999999986322211
Q ss_pred H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHH
Q 000941 82 V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1215)
Q Consensus 82 ~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~ 158 (1215)
+ ...++.|...+.++++..|..++.+|..+...-+. ....+. ...+|.|++.+.+. ++.++..++.+|+.+..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch--HHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc
Confidence 1 12688888888888888999999999988754321 112222 34789999988775 68999999999999976
Q ss_pred Hhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHH
Q 000941 159 KFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1215)
Q Consensus 159 ~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~ 233 (1215)
........ .....++.++..+.++++.+|+.|+.+|+.++...++. +. ...++.+++.+.+++. ++++.++.+
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~A~~~ 245 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEA 245 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS--HHHHTHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH--HHHHHHHHH
Confidence 54332211 12456788888899988999999999999998543332 12 2367778887776653 788888888
Q ss_pred HHHHHh
Q 000941 234 VGALSR 239 (1215)
Q Consensus 234 l~~l~~ 239 (1215)
++.++.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 887653
No 66
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.86 E-value=1.6e-05 Score=104.98 Aligned_cols=532 Identities=13% Similarity=0.066 Sum_probs=282.2
Q ss_pred HHHHHHHHHhcCC--CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhh----cc
Q 000941 4 LQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KV 77 (1215)
Q Consensus 4 ~~l~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~----~~ 77 (1215)
..+..+++.+-++ |++.|..|..-|.+. ++.. +....+...+. -.+.+..||..|...+...+. .+
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~-~~~p-----~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEF-KEKC-----PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHHC-----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HhCc-----hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 3466777777776 667799998887554 3211 11112222221 245678999999999998874 36
Q ss_pred ChhhHHHHHHHHHHHhcCC-------CcchhhHHHHHHHHHHh-ccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHH
Q 000941 78 SEPRVVEMTDKLCIKLLNG-------KDQHRDIASIALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1215)
Q Consensus 78 ~~~~~~~lv~~L~~~~~~~-------~~~~r~~a~~aL~~~i~-~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~a 149 (1215)
+++.-..+=..|++.+.+. ...+|...+.++..++. +.|. -+..++|.+++.++. +...+..+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~------~Wp~ll~~L~~~~~~---~~~~~e~~ 153 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ------HWPDMLIELDTLSKQ---GETQTELV 153 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT------TCTTHHHHHHHHHHT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHhcC---CHHHHHHH
Confidence 6666666666777665422 23456666666766654 2332 255677777776654 34567778
Q ss_pred HHHHHHHHHHhhh--------------hhhhhHHHHHHHHhhhhcC-------------------ChHHHHHHHHHHHHH
Q 000941 150 LDILCDVLHKFGN--------------LMSNDHERLLSALLPQLSA-------------------NQASVRKKSVSCIAS 196 (1215)
Q Consensus 150 l~~L~~l~~~~g~--------------~l~~~~~~ll~~ll~~l~~-------------------~~~~vrk~a~~~l~~ 196 (1215)
+.+|..+.+.... .+....+.+++.+...+.+ +...+++.++.|+..
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888877664211 1222344555555544432 123578888888887
Q ss_pred HHhhcCHHHH-H---HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhh--hhhhccchhhh----HHHHHHhhccc---
Q 000941 197 LASSLSDDLL-A---KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV--GYRFGPHLGDT----VPVLIDYCTSA--- 263 (1215)
Q Consensus 197 l~~~~~~~~~-~---~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~--~~~~~~~l~~i----ip~ll~~~~~~--- 263 (1215)
+..-.+-.++ + .+++.++..+.+ ++.|..+++|+..++..- +..+.+.+..+ +..+++.....
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCHHHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 7776665543 2 377777765543 257889999999998743 33333443322 22333332100
Q ss_pred --CCCcHHHHHHHHHHHHHHHHhCh----h----hhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcC
Q 000941 264 --SENDEELREYSLQALESFLLRCP----R----DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1215)
Q Consensus 264 --~~~d~elre~al~~l~~l~~~~~----~----~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~ 333 (1215)
+++|.++++...+.+..+....- + ...+.+..+++.++.+..+ |. +
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~-~~------------------~----- 365 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH-PS------------------Q----- 365 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS-SC------------------H-----
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC-cc------------------H-----
Confidence 12334444443333333321110 0 2345678888888888763 10 0
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhh----CchhhHHHHHHHHHHH---Hhhhcccc-----------------------
Q 000941 334 EYTDDEDASWKVRRAAAKCLAALIVS----RPEMLSKLYEEACPKL---IDRFKERE----------------------- 383 (1215)
Q Consensus 334 ~~~dd~d~swkvR~~Aa~~L~~li~~----~~~~l~~~~~~i~p~L---i~~~~d~e----------------------- 383 (1215)
.|-..+...+..++.. ..+.+.+++..+++.+ +.+++-++
T Consensus 366 ----------~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~ 435 (1204)
T 3a6p_A 366 ----------FLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAF 435 (1204)
T ss_dssp ----------HHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHH
T ss_pred ----------HhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHH
Confidence 1222222233333322 1233455666666666 33332111
Q ss_pred -hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc-------------------------
Q 000941 384 -ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE------------------------- 437 (1215)
Q Consensus 384 -~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~------------------------- 437 (1215)
.+-|..+...+..+.... |. ..++.+.+.+...+.+
T Consensus 436 f~~~Rk~~~d~l~~i~~v~--------------p~----~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s 497 (1204)
T 3a6p_A 436 FNSSRAQQGEVMRLACRLD--------------PK----TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFS 497 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------HH----HHHHHHHHHHHHHHTCC-----------------CCSCSSS
T ss_pred HHHHHHHHHHHHHHHHhcC--------------HH----HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCC
Confidence 122333322222222211 11 1122222333222221
Q ss_pred cChhhHHHHHHHHHHHHHhCchhh-hhhhh-hhhHHHHHhhcC-CCCcchhHHHHHHHHHHHhccCCCCcchhhhhhhHH
Q 000941 438 KSIKTKVGAFSVLRELVVVLPDCL-ADHIG-SLIPGIEKSLND-KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1215)
Q Consensus 438 ~~~~~r~~~~~~l~~L~~~~~~~l-~~~~~-~lv~~l~~~l~d-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p 514 (1215)
..+....+.+.++..+........ .++++ .+++.+...+-. ....+.++..++.+++.+..... .-..+++.++.
T Consensus 498 ~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~--~~p~~L~~vL~ 575 (1204)
T 3a6p_A 498 PSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT--YRPEFLPQVFS 575 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG--TCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 011123344445555544321111 13333 234444443211 11236677788887777655422 11247888888
Q ss_pred HHHHHhcCC------------chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccC-CCHHHHHHH
Q 000941 515 PVLAAVGER------------YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD-QDQEVKECA 581 (1215)
Q Consensus 515 ~l~~~l~d~------------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d-~~~~Vr~~A 581 (1215)
.++..+.+. ..+++..|..++..++..++ ..+.||++.+...+-..+.... .+..-+..-
T Consensus 576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-------~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L 648 (1204)
T 3a6p_A 576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-------QLVLPNFDMLYNHVKQLLSNELLLTQMEKCAL 648 (1204)
T ss_dssp HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-------HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHH
T ss_pred HHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 888777651 22677888888888887663 3588999999998877776443 444445555
Q ss_pred HHHHHHHHHhccCcc--cchhhhhHHHHHHhhccchhH
Q 000941 582 ISCMGLVISTFGDNL--GAELPACLPVLVDRMGNEITR 617 (1215)
Q Consensus 582 i~~lg~l~~~~~~~l--~~~~~~~l~~L~~~L~~e~~r 617 (1215)
..+++.++...+..- ..++..+++-+.+.+.++..+
T Consensus 649 ~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~ 686 (1204)
T 3a6p_A 649 MEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMH 686 (1204)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 667776644444321 124777777777777765443
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.85 E-value=5.1e-06 Score=98.71 Aligned_cols=355 Identities=17% Similarity=0.137 Sum_probs=222.6
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhccChhh--H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHH
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~--~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~ 122 (1215)
-++.++..|.+++.++|..|+.+|..++..-.+.. + ...++.|+..+.+++.+++..|+.||+.+...-.. ....
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~-~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ-DNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH-HHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH-HHHH
Confidence 46777788899999999999999998885322211 1 13478888888888888999999999998753211 2222
Q ss_pred HHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh--hh-hhhHHHHHHHHh-hh-------------hcCChH
Q 000941 123 SIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN--LM-SNDHERLLSALL-PQ-------------LSANQA 184 (1215)
Q Consensus 123 ~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~--~l-~~~~~~ll~~ll-~~-------------l~~~~~ 184 (1215)
.+.+ -.+|.|+..|.... +.+++..+..+|..+..+-.. .+ ....+.++..+. +. ...+..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 2222 36788998888643 578889988888877653211 11 112333333321 00 012245
Q ss_pred HHHHHHHHHHHHHHhhcCHH---HH--HHHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHhhhhhhh------c---
Q 000941 185 SVRKKSVSCIASLASSLSDD---LL--AKATIEVVRNLRS----KGAKPEMIRTNIQMVGALSRAVGYRF------G--- 246 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~---~~--~~l~~~ll~~l~~----~~~~~~~~~~~i~~l~~l~~~~~~~~------~--- 246 (1215)
.|++.|..||..++...++. +. ..+++.++..+++ ...+....+.++-++..++..+.... .
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 89999999999998754331 21 2345555555543 22223567778888888776542111 0
Q ss_pred ---------------c--chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh---hhhcccH--HHHHHHHHHHh
Q 000941 247 ---------------P--HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP---RDISSYC--DEILHLTLEYL 304 (1215)
Q Consensus 247 ---------------~--~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~---~~~~~~l--~~ii~~~l~~l 304 (1215)
. +-+.+++.++..++. ...++++|.|..++..++...+ ..++..+ ...++.+.+++
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 0 113557777887764 2568999999999999986432 2232222 35577777777
Q ss_pred ccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhccc--
Q 000941 305 SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-- 382 (1215)
Q Consensus 305 ~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~-- 382 (1215)
... +..|++.|+.+|+.+.... ..-..+-...+|.|+..+...
T Consensus 365 ~s~----------------------------------~~~v~~~A~~aL~nLs~~~-~~~~~I~~g~ip~LV~LL~~~~~ 409 (584)
T 3l6x_A 365 TNE----------------------------------HERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGGQQ 409 (584)
T ss_dssp GCS----------------------------------CHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSSSSC
T ss_pred cCC----------------------------------CHHHHHHHHHHHHHHhCCh-hHHHHHHhCCHHHHHHHhcCCcc
Confidence 410 1278999999999987643 222334456889999888544
Q ss_pred ------chhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH-HHHHHHHHHHhccc--ChhhHHHHHHHHHHH
Q 000941 383 ------EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREK--SIKTKVGAFSVLREL 453 (1215)
Q Consensus 383 ------e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~-p~i~~~l~~~L~~~--~~~~r~~~~~~l~~L 453 (1215)
.++++..++.++..++... +. .-+... ...++.+...+.+. +++++..|..+|..+
T Consensus 410 ~~~~~~s~~v~~~a~~tL~NL~a~~--------------~~-~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 410 NSSWNFSEDTVISILNTINEVIAEN--------------LE-AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp SGGGTCCHHHHHHHHHHHHHHHTTC--------------HH-HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCC--------------HH-HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 3567777777777765321 11 001111 23445556666664 677888999999988
Q ss_pred HH
Q 000941 454 VV 455 (1215)
Q Consensus 454 ~~ 455 (1215)
..
T Consensus 475 ~~ 476 (584)
T 3l6x_A 475 WG 476 (584)
T ss_dssp HT
T ss_pred Hc
Confidence 75
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.85 E-value=1.2e-06 Score=83.01 Aligned_cols=201 Identities=16% Similarity=0.252 Sum_probs=146.6
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHH
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE-ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e-~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 420 (1215)
-|.||+-|...+.+++..+|+...+...+++-.+ +..| -..-.++.++++.+.+-- |
T Consensus 45 lwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~----~ksEaIpltqeIa~a~G~la~i~--------------P---- 102 (253)
T 2db0_A 45 LWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLL----KKSEAIPLTQEIAKAFGQMAKEK--------------P---- 102 (253)
T ss_dssp CHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH----HHCCSHHHHHHHHHHHHHHHHHC--------------H----
T ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH----hhcccCchHHHHHHHHhHHHHhC--------------H----
Confidence 4999999999999999999998777666655433 2222 223356777787776531 2
Q ss_pred HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
+.+..+++.+..-..-..++.|...-++|.+++...|.. ++.++..+...+.+++ ..-|..+++|++.+-.++
T Consensus 103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKN--REDKLTALNFIEAMGENS 175 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTT
T ss_pred -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccC
Confidence 345666777777776668889999999999999987764 4555556666777655 455788999988875443
Q ss_pred CCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHH
Q 000941 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1215)
Q Consensus 501 ~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~ 580 (1215)
..|+.+.+|.+...+.|++--|++.|..++..++. ..|.+..++...++.+. |...-|...
T Consensus 176 -----~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~------------~npklRkii~~kl~e~~--D~S~lv~~~ 236 (253)
T 2db0_A 176 -----FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT------------LNDKLRKVVIKRLEELN--DTSSLVNKT 236 (253)
T ss_dssp -----HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT------------SCHHHHHHHHHHHHHCC--CSCHHHHHH
T ss_pred -----ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHH------------cCHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence 24888889999999999999999999999999874 34556666666666554 666777777
Q ss_pred HHHHHHHHHH
Q 000941 581 AISCMGLVIS 590 (1215)
Q Consensus 581 Ai~~lg~l~~ 590 (1215)
.-+++|.+..
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788877653
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.82 E-value=1.2e-06 Score=103.45 Aligned_cols=349 Identities=14% Similarity=0.132 Sum_probs=218.6
Q ss_pred HHHHHHhccCcccchhHHHHHHHHHHhhccCh-h-hH--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHH
Q 000941 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-P-RV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS 123 (1215)
Q Consensus 48 ~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-~-~~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~ 123 (1215)
++.+++.|+++++++|..|+.+|..+...-.+ . .+ ...++.|...+.+++++.+..++.+|+.+...-+ +....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST--TNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHHH
Confidence 56788889999999999999999999853322 1 11 2347888888888888888999999999886422 22222
Q ss_pred HH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhh--------cCC--------hHH
Q 000941 124 IH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQL--------SAN--------QAS 185 (1215)
Q Consensus 124 ~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l--------~~~--------~~~ 185 (1215)
+. .-.+|.|++.|.... +.+++..+..+|..+... +.... .....++.++..+ .++ ...
T Consensus 82 i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 32 246799999887322 689999999999999876 22211 1126667777777 222 345
Q ss_pred HHHHHHHHHHHHHhhcCHH---HH--HHHHHHHHHHhhcC----CCChHHHHHHHHHHHHHHhhhhh-------------
Q 000941 186 VRKKSVSCIASLASSLSDD---LL--AKATIEVVRNLRSK----GAKPEMIRTNIQMVGALSRAVGY------------- 243 (1215)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~---~~--~~l~~~ll~~l~~~----~~~~~~~~~~i~~l~~l~~~~~~------------- 243 (1215)
+.+.|+.+|..++.. ++. +. +..++.++..+++. ..+...++.++.++..++.....
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 777999999999975 322 12 15677777777641 11123455555555555421100
Q ss_pred -----------hhcc---------------------------chhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 244 -----------RFGP---------------------------HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 244 -----------~~~~---------------------------~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
-|.. .-..+++.++..+.. ..++++++.+.+++..++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhccCc
Confidence 0000 013456777777764 356899999999999998654
Q ss_pred hh---hh-cccH--HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh
Q 000941 286 PR---DI-SSYC--DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1215)
Q Consensus 286 ~~---~~-~~~l--~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~ 359 (1215)
+. .+ +..+ ...++.+.+++.. + +.+||+.|+.+|..+...
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~---------------------------------~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQS-G---------------------------------NSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTC-S---------------------------------CHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhC-C---------------------------------CHhHHHHHHHHHHHHhcC
Confidence 32 22 1112 2345666676641 0 137999999999988653
Q ss_pred CchhhHHHHHHHHHHHHhhhcccc------hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHH--HHHHHHH
Q 000941 360 RPEMLSKLYEEACPKLIDRFKERE------ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSI 431 (1215)
Q Consensus 360 ~~~~l~~~~~~i~p~Li~~~~d~e------~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~--p~i~~~l 431 (1215)
++....+-...+|.|++.+...+ +++...++.++..++... + .....+ ...++.+
T Consensus 362 -~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--------------~--~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 362 -PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ--------------P--QLAKQYFSSSMLNNI 424 (457)
T ss_dssp -GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--------------T--HHHHHHCCHHHHHHH
T ss_pred -HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------H--HHHHHHHHcCCHHHH
Confidence 33333344567899998886542 356666777777766421 1 111111 3445566
Q ss_pred HHHhccc-ChhhHHHHHHHHHHHHH
Q 000941 432 NRQLREK-SIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 432 ~~~L~~~-~~~~r~~~~~~l~~L~~ 455 (1215)
...++.. +.+++..|+.+|..+..
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 6666666 77888888888887653
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.79 E-value=7.6e-07 Score=105.12 Aligned_cols=355 Identities=10% Similarity=0.123 Sum_probs=223.4
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
.|..++..+.+.|+++|+.|+..|.+....+......-.....++.|+++|.++++++|..|+.+|..|+.. .++.-..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 467788889999999999999999886543211000112334789999999999999999999999999863 2222223
Q ss_pred H-----HHHHHHHhc-CCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhh--------ccC------CChh
Q 000941 85 M-----TDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGIT--------LKD------MNTE 144 (1215)
Q Consensus 85 l-----v~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~--------~~~------~~~~ 144 (1215)
+ ++.|...+. +++.+.++-++-+|..+... +. ....+.+-.+|.|++.+. +.. .+..
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~--~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS--THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH--hHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 3 778888887 66778889999999998876 32 333344577888888883 111 1345
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcC------ChHHHHHHHHHHHHHHHhhc---------------
Q 000941 145 IRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA------NQASVRKKSVSCIASLASSL--------------- 201 (1215)
Q Consensus 145 v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~------~~~~vrk~a~~~l~~l~~~~--------------- 201 (1215)
+...++.+|..+... ........ +..++.++..+.+ ++..++..++.++..++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 666899999988765 22211111 1345555555543 23345555665555543100
Q ss_pred -------------------------------------CHH-H-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 202 -------------------------------------SDD-L-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 202 -------------------------------------~~~-~-~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
+.+ + -...++.++..+.+... +..++.++.+++.++...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-DATLEACAGALQNLTASKG 316 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcC
Confidence 000 0 13456677777776543 5778888899998886432
Q ss_pred h---hh-ccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcc-cHHHHHHHHHHHhccCCCCCCCCC
Q 000941 243 Y---RF-GPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYLSYDPNFTDNME 315 (1215)
Q Consensus 243 ~---~~-~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~-~l~~ii~~~l~~l~~dpn~~~~~d 315 (1215)
. .. ...+ ...+|.+++.+. ..+++++..+.+++..+... + .... .-...++.+.+.+... +.
T Consensus 317 ~~~~~~~~~~v~~~~~l~~Lv~LL~---~~~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~-~~----- 385 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEKGLPQIARLLQ---SGNSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSH-TG----- 385 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTT---CSCHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSC-CS-----
T ss_pred cchHHHHHHHHHHcCCchHHHHHHh---CCCHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCC-CC-----
Confidence 1 11 1112 356888888887 46789999999999999763 3 2222 2235566676766421 00
Q ss_pred CCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhccc-chhHHHHHHHH
Q 000941 316 EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER-EENVKMDVFNT 393 (1215)
Q Consensus 316 ~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~-e~~Vr~~~~~~ 393 (1215)
+...+-++-.+++.+++.++...++....+. ...++.|+..++.. .+.++..+...
T Consensus 386 ----------------------~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 386 ----------------------NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp ----------------------CSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------CCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 0001125677888888888877665433332 24567777666665 78888888777
Q ss_pred HHHHH
Q 000941 394 FIELV 398 (1215)
Q Consensus 394 l~~l~ 398 (1215)
+..+.
T Consensus 444 L~~~~ 448 (457)
T 1xm9_A 444 LSDMW 448 (457)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 65554
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.77 E-value=2.1e-06 Score=101.93 Aligned_cols=362 Identities=12% Similarity=0.079 Sum_probs=228.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..|..+++.+.+.|+++++.|+..|.+......-....=.....++.|+.+|.+++.+||..|+.+|..|+..-.++.-.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 35788899999999999999998887665432110000112246789999999999999999999999998531122211
Q ss_pred -----HHHHHHHHHhcC-CCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhh-------c---------cCC
Q 000941 84 -----EMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGIT-------L---------KDM 141 (1215)
Q Consensus 84 -----~lv~~L~~~~~~-~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~-------~---------~~~ 141 (1215)
.-++.|+..+.+ .+.+.++.++.+|.++... + .....+.+.-+|.|++.+. . ...
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-D--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-G--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-c--hhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 236777777765 3556678888888877642 2 2333444556777766441 0 111
Q ss_pred ChhHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHhhhhc------CChHHHHHHHHHHHHHHHhhcCHH--------
Q 000941 142 NTEIRCECLDILCDVLHKFGN---LMSNDHERLLSALLPQLS------ANQASVRKKSVSCIASLASSLSDD-------- 204 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~---~l~~~~~~ll~~ll~~l~------~~~~~vrk~a~~~l~~l~~~~~~~-------- 204 (1215)
+..|+..+..+|..+...... .+. ....+++.++..+. +++..+.+.|+.+|..|+.....+
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~-~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLR-ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 468899999999888654322 121 11223334444443 234467888888887776442111
Q ss_pred --------------------HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh---hhhccch--hhhHHHHHH
Q 000941 205 --------------------LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFGPHL--GDTVPVLID 258 (1215)
Q Consensus 205 --------------------~~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~---~~~~~~l--~~iip~ll~ 258 (1215)
++ ...++.++..++... +..+++.++-++..++..-+ ..+...+ ...+|.+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 01 245677777776544 35788889999999986421 1222222 356889999
Q ss_pred hhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCC
Q 000941 259 YCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1215)
Q Consensus 259 ~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd 338 (1215)
.+. ..++++++.+.+++..++.. +..-..+-...++.+...+... +. . . .
T Consensus 363 LL~---s~~~~v~~~A~~aL~nLs~~-~~~~~~I~~g~ip~LV~LL~~~-~~----~--~-------------------~ 412 (584)
T 3l6x_A 363 LLT---NEHERVVKAASGALRNLAVD-ARNKELIGKHAIPNLVKNLPGG-QQ----N--S-------------------S 412 (584)
T ss_dssp GGG---CSCHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSSS-SC----S--G-------------------G
T ss_pred HHc---CCCHHHHHHHHHHHHHHhCC-hhHHHHHHhCCHHHHHHHhcCC-cc----c--c-------------------c
Confidence 887 46789999999999999864 3221222345677777776421 00 0 0 0
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhccc--chhHHHHHHHHHHHHHHH
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER--EENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~--e~~Vr~~~~~~l~~l~~~ 400 (1215)
-..+-.++..|+.+|+.++...++.-..+. ...+|.|+..++.. .+.++..+..++..+..+
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 001225678889999988877775544433 35778888877654 678888888888777653
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.76 E-value=0.00044 Score=83.43 Aligned_cols=512 Identities=13% Similarity=0.140 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCC
Q 000941 145 IRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKG 221 (1215)
Q Consensus 145 v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~ll~~l~~~~ 221 (1215)
-...-+.++..++.+|+..+.+ ..-+++.+.. ....+.||.-++.++..+-...++.. |..+++.++-.-....
T Consensus 148 ~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~ 224 (778)
T 3opb_A 148 HVTYLLSIILQLLNKFKYNFKE-VRFLVKELIL--RISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDV 224 (778)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHHT--TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHcCccccc-hhhHHHHhcc--ccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCC
Confidence 4456678899999999987754 4444444433 34456899999999988887766542 3344443321111211
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhhcc-ch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh-hhhcccH-HHHH
Q 000941 222 AKPEMIRTNIQMVGALSRAVGYRFGP-HL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYC-DEIL 297 (1215)
Q Consensus 222 ~~~~~~~~~i~~l~~l~~~~~~~~~~-~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~-~~~~~~l-~~ii 297 (1215)
.+ +....++.++.++.-.+|.--.+ |+ ...+|.+.+.+.. ..+.++..++++.+.. .|- +..+.|+ ...+
T Consensus 225 ~~-~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~--~~~~~~~~a~L~lLsa---ACi~~~cR~~I~~~~~ 298 (778)
T 3opb_A 225 GN-DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE--EQDLQFTKELLRLLSS---ACIDETMRTYITENYL 298 (778)
T ss_dssp SS-CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS--SCCHHHHHHHHHHHHH---HCCSHHHHHHHHHHHH
T ss_pred CC-ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc--ccchHHHHHHHHHHHH---HhCCcHHHHHHHHhHH
Confidence 11 22334444444443333321111 11 2235555555432 2345555555555443 332 2334333 2223
Q ss_pred HHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHh
Q 000941 298 HLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLID 377 (1215)
Q Consensus 298 ~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~ 377 (1215)
+.+...++. -.+|..|+.+|..+-...... ..-...+.+.+.+
T Consensus 299 ~~L~~~l~~------------------------------------~~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~ 341 (778)
T 3opb_A 299 QLLERSLNV------------------------------------EDVQIYSALVLVKTWSFTKLT-CINLKQLSEIFIN 341 (778)
T ss_dssp HHHHHHTTS------------------------------------GGGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHH
T ss_pred HHHHHHhcc------------------------------------HHHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHH
Confidence 333333320 046888888887765432110 1112335556666
Q ss_pred hhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcc-cChhhHHHHHHHHHHHHHh
Q 000941 378 RFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE-KSIKTKVGAFSVLRELVVV 456 (1215)
Q Consensus 378 ~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~-~~~~~r~~~~~~l~~L~~~ 456 (1215)
.+.......|.-++++|.-+-.... -...+. .-+..++.+.+.++. .......+++.+|..+...
T Consensus 342 ~L~~~~~~~~~~AvEgLaYLSl~~~-------------VKe~L~-~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 342 AISRRIVPKVEMSVEALAYLSLKAS-------------VKIMIR-SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HTTTCCHHHHHHHHHHHHHHTTSSH-------------HHHHHH-HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHhcCCccHHHHHHHHHHHHhCCHH-------------HHHHHH-hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 6654443346677777766532110 011222 225667777777774 4445677788888888775
Q ss_pred Cchhhhh---hhhhhhHHHHHhhcCCCCcch-h-HHHH-HHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHH
Q 000941 457 LPDCLAD---HIGSLIPGIEKSLNDKSSTSN-L-KIEA-LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAE 530 (1215)
Q Consensus 457 ~~~~l~~---~~~~lv~~l~~~l~d~~~~~~-~-~~~a-l~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~ 530 (1215)
.+. ... .+..+-+......-+...... . ..+. ..+-...+-. ...+|.+...+...+..++..
T Consensus 408 ~~~-~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e----------aGvIp~Lv~Ll~S~s~~~re~ 476 (778)
T 3opb_A 408 PEE-XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR----------TELISFLKREMHNLSPNCKQQ 476 (778)
T ss_dssp CCC-CCCCCC------------------CCTHHHHHHHHHHHHHHHTTT----------TTHHHHHHHHGGGSCHHHHHH
T ss_pred Ccc-cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH----------CcCHHHHHHHHcCCCHHHHHH
Confidence 443 111 222222222111000000001 0 1111 1111222221 236777888887778899999
Q ss_pred HHHHHHHHHHhccCCCcCCCCCChh-cHH-HHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhccC--cccc-hhhhhH
Q 000941 531 ALRVCGELVRVLRPSVEGLGFDFKP-YVQ-PIYNAIMSRLTNQDQD-QEVKECAISCMGLVISTFGD--NLGA-ELPACL 604 (1215)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~-~l~-~l~~~l~~~l~~~d~~-~~Vr~~Ai~~lg~l~~~~~~--~l~~-~~~~~l 604 (1215)
|..++..++.. . ..+. .++ ..++.++..+...... .++|+.|..+|+.+...... .+.. .....+
T Consensus 477 A~~aL~nLS~d-~--------~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI 547 (778)
T 3opb_A 477 VVRIIYNITRS-K--------NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI 547 (778)
T ss_dssp HHHHHHHHHTS-G--------GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred HHHHHHHHcCC-H--------HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence 99999999743 1 1121 121 2456666666643221 24899999999999865522 1111 112677
Q ss_pred HHHHHhhcc--ch--------------hHHHHHHHHHHHHcCCCC--Cch-hHHHH--HHHHHHHHHHHHhhhHHHHHHH
Q 000941 605 PVLVDRMGN--EI--------------TRLTAVKAFAVIAASPLH--IDL-TCVLE--HVIAELTAFLRKANRALRQATL 663 (1215)
Q Consensus 605 ~~L~~~L~~--e~--------------~r~~a~~al~~i~~s~~~--~~~-~~~l~--~~l~~L~~~L~~~~~~lr~~al 663 (1215)
|-|++.|.. +. .+..|+.||++++..+.. .+. ...+. ..++.|..++.+++..+|.+|.
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~ 627 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHH
Confidence 777777762 11 166899999999965311 122 33454 4889999999989999999999
Q ss_pred HHHHHHHHHhCC---CCCcchHH---HHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhhhh--hhHHHHHH
Q 000941 664 GTMNSLVVAYGD---KIGASAYE---VIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRN--KVLPQALA 735 (1215)
Q Consensus 664 ~~L~~l~~~~~~---~~~~~~~~---~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~--~~l~~l~~ 735 (1215)
++++.++.+... .+-...-+ .-+..+..++..+|..++..|..+++.+... .|.....+.. ..++.++.
T Consensus 628 elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~---~~~ia~~ll~~~~gi~~Ll~ 704 (778)
T 3opb_A 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT---IPLIAKELLTKKELIENAIQ 704 (778)
T ss_dssp HHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---CHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC---ChHHHHHHHHccccHHHHHH
Confidence 999999975432 22111101 1266677888889999999999999988642 3332222222 35666666
Q ss_pred Hhhh
Q 000941 736 LIKS 739 (1215)
Q Consensus 736 ll~s 739 (1215)
++++
T Consensus 705 lL~~ 708 (778)
T 3opb_A 705 VFAD 708 (778)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6655
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.76 E-value=7.3e-05 Score=90.16 Aligned_cols=478 Identities=13% Similarity=0.099 Sum_probs=266.3
Q ss_pred chHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHH-HHhhccCCCHHHHHHHHHHHHHHHHhccCcccc-hh-
Q 000941 524 YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM-SRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-EL- 600 (1215)
Q Consensus 524 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~l~~~d~~~~Vr~~Ai~~lg~l~~~~~~~l~~-~~- 600 (1215)
...++..++-++..+.+... +.+...+...+..++ +.=...+.++ --.++.++..+.-..++...+ ++
T Consensus 183 ~~~~~~~~l~i~~~~~~~~~-------~~~~~~~~~~~~~l~~e~~~~~~~~~--~~~~~~~l~~lfPi~p~~~s~lfl~ 253 (778)
T 3opb_A 183 EDEVKSMMLIIFAELQSSFQ-------KDFDKAVVDFMSSLIVEAEIDVGNDP--LSIIVKTLSELYPSLTTLCSEIFLT 253 (778)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCSSCH--HHHHHHHHHHHTTTTHHHHHHHHST
T ss_pred hhhhHHHHHHHHHHHHHhCc-------hHHHHHHHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHhcCCHHHHHHHHcc
Confidence 44788888888877776542 234444555544222 2111111122 334566655543332222221 11
Q ss_pred hhhHHHHHHhhc---cchhHHHHHHHHHHHHcCCCCCchhHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC
Q 000941 601 PACLPVLVDRMG---NEITRLTAVKAFAVIAASPLHIDLTCV-LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 676 (1215)
Q Consensus 601 ~~~l~~L~~~L~---~e~~r~~a~~al~~i~~s~~~~~~~~~-l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 676 (1215)
..+.+.+.++++ ++....+.++.+...+.. .....| ....+++|...+.. +.+|.-|+.+|..+....+..
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~---~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACID---ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC---cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC
Confidence 223455555552 223334455555554422 112333 35566777776643 578888999999887655432
Q ss_pred CCcchHHHHHHHhhhhcCCCChhhHHHHHHHHHHHhhcccCCCchhhhh--hhhhHHHHHHHhhhcccchhhhHHHHHHH
Q 000941 677 IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAV--RNKVLPQALALIKSSLLQGQALVALQSFF 754 (1215)
Q Consensus 677 ~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~--~~~~l~~l~~ll~s~~l~~~~l~~l~~~~ 754 (1215)
...+..+...+...+..++..-++.+++.|+.+.. .|.+.... ...++..++++++++. .....+..+..+
T Consensus 329 --~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl----~~~VKe~L~~d~~~L~~Lv~llk~~~-d~s~~Ygal~IL 401 (778)
T 3opb_A 329 --CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL----KASVKIMIRSNESFTEILLTMIKSQK-MTHCLYGLLVIM 401 (778)
T ss_dssp --TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT----SSHHHHHHHHCHHHHHHHHHHHTTTC-CTTHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC----CHHHHHHHHhCHHHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 23356677777888877676668999999999975 56554433 2456888999887532 233446677777
Q ss_pred HHHHhhcCCCh--HHHHHHHhccCCC-----CCCCcchhhhhhhhHHHHHHHHHhhcCCcchhhHHHHHHHHhcCCCchh
Q 000941 755 AALVYSANTSF--DTLLDSLLSSAKP-----SPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTN 827 (1215)
Q Consensus 755 ~~l~~~~~~~~--~~l~~~ll~~~~~-----~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 827 (1215)
.+++....... .+-+..|..-... ......+.++. +...+....+ .. .+.+..+...++..++..
T Consensus 402 ~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~-~v~~~~~~~l-~e------aGvIp~Lv~Ll~S~s~~~ 473 (778)
T 3opb_A 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE-DILLFNEKYI-LR------TELISFLKREMHNLSPNC 473 (778)
T ss_dssp HHTTCCCCCCCCCCC------------------CCTHHHHHH-HHHHHHHHHT-TT------TTHHHHHHHHGGGSCHHH
T ss_pred HHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH-HHHHHHHHHH-HH------CcCHHHHHHHHcCCCHHH
Confidence 77776432100 0112222111100 00000000000 0001000111 11 246666776666554444
Q ss_pred hHHHHHHHhhhhccCCCCC---ccchHHHHHHhcCCCchh---HhhHHHHHHHhhhh-cCc---------ccchHHHHHH
Q 000941 828 SHLALLCLGEIGRRKDLSS---HEHIENVIIESFQSPFEE---IKSAASYALGNIAV-GNL---------SKFLPFILDQ 891 (1215)
Q Consensus 828 ~~lal~~lgei~~~~~~~~---~~~l~~~ll~~l~~~~e~---vR~aAa~aLG~l~~-~~~---------~~~lp~il~~ 891 (1215)
+..+..+|+-+........ .....+.++.++.+..+. +|..|+.||.++.. .|+ -..+|.+++.
T Consensus 474 re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~L 553 (778)
T 3opb_A 474 KQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFEL 553 (778)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHH
Confidence 6667777776643321110 124667788888766543 89999999999983 221 1456888888
Q ss_pred hhcccc---------------hhHHHHHHHHHHHhhccccchhhhh-HHHH--HHHHHHHhhccCCccchhhHHHHHhhh
Q 000941 892 IDNQQK---------------KQYLLLHSLKEVIVRQSVDKAEFQD-SSVE--KILNLLFNHCESEEEGVRNVVAECLGK 953 (1215)
Q Consensus 892 l~~~~~---------------~~~~~l~alke~i~~~~~~~~~~~~-~~~~--~i~~~L~~~~~~~~e~~r~~aae~Lg~ 953 (1215)
+..++. .++-.+.||.-+....... .+.++ ..+. ..|+.|...+.++.+.+|+.|+++++.
T Consensus 554 L~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~-~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD-GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp SCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH-HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc-chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 873221 1555666666555432100 12222 2333 478888888777778899999999999
Q ss_pred ccccCCC---cc-----------hHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhh--HhHHHHHHhccC--CC
Q 000941 954 IALIEPA---KL-----------VPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF--PEISSFLMLIKD--QD 1015 (1215)
Q Consensus 954 l~~~~~~---~~-----------lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~--~~i~~~l~~l~D--~d 1015 (1215)
|+..... .| ++.|.+++.+.+...|..+.+++..+-+..+.-....+. ..+..++..|++ ++
T Consensus 633 L~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~ 712 (778)
T 3opb_A 633 MMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD 712 (778)
T ss_dssp HHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred HhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCC
Confidence 9973321 22 556778888888999999999998654333221222232 356677788888 89
Q ss_pred hHHHHHHHHHHHHHHh
Q 000941 1016 RHVRRAAVLALSTFAH 1031 (1215)
Q Consensus 1016 ~~Vr~~a~~~L~~~~~ 1031 (1215)
.++|..++.++..++.
T Consensus 713 ~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 713 IELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999889988886
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.73 E-value=1.1e-07 Score=98.85 Aligned_cols=185 Identities=16% Similarity=0.185 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHH
Q 000941 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS 123 (1215)
Q Consensus 44 ~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~ 123 (1215)
.....+.+++.|+|+++.||..|+.+|+.+.. + ..++.|...+.++++.+|..+..+|..+-.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---E----RAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---h----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 45677888999999999999999999998753 2 345666666767777888888888776431
Q ss_pred HHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH
Q 000941 124 IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 124 ~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
...+|.|...+.+. ++.+|..++.+|+.+ |. +..++.+...+.++++.||..|+.+|+.+...
T Consensus 75 --~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~----~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 137 (201)
T 3ltj_A 75 --ERAVEPLIKALKDE--DGWVRQSAAVALGQI----GD------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 137 (201)
T ss_dssp --GGGHHHHHHHTTCS--SHHHHHHHHHHHHHH----CC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG---
T ss_pred --HHHHHHHHHHHcCC--CHHHHHHHHHHHHHh----Cc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---
Confidence 13456777777764 689999999999875 22 23445566777899999999999999988641
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHH
Q 000941 204 DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1215)
Q Consensus 204 ~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l 281 (1215)
..++.+...+.+++ ..+|..++.+++.+.. +..++.+...++ +.++.+|..+.+++..+
T Consensus 138 ----~~~~~L~~~l~d~~--~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 ----RAVEPLIKALKDED--GWVRQSAADALGEIGG----------ERVRAAMEKLAE---TGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----GGHHHHHHHTTCSS--HHHHHHHHHHHHHHCS----------HHHHHHHHHHHH---HCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc----------hhHHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 35566777777654 4788899999988721 456777777776 57889999999888754
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.73 E-value=7.8e-08 Score=100.83 Aligned_cols=188 Identities=14% Similarity=0.145 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..+..+++.+.+.|+++|..|+..|...-. ...++.|++.|.|+++.||..|+.+|+.+.. +
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~---- 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---E---- 80 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---G----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H----
Confidence 457888999999999999999988865321 2567888899999999999999999998753 2
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
..++.|...+.++++.+|..+..+|..+-. ...+|.|...+.+. ++.||..++.+|+.+ |.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~----~~- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE--DWFVRIAAAFALGEI----GD- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHH----CC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHc----CC-
Confidence 345566666777778888888888876531 23456777777664 689999999999876 22
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
+..++.+...++++++.||..|+.+|+.+.. ...++.+...+.+++ ..+|..++++++.+....+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~--~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETGT--GFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHCC--HHHHHHHHHHHHC------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCC
Confidence 2345667777888899999999999998863 234555666666654 4789999999988876543
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.73 E-value=1.8e-07 Score=98.05 Aligned_cols=187 Identities=20% Similarity=0.171 Sum_probs=139.4
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHH
Q 000941 811 STVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILD 890 (1215)
Q Consensus 811 ~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~ 890 (1215)
..++.++..+.++....+..++..||.++. +...+.+++.+.++++.+|..|+.+||.+.. ...+|.+++
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~~ 88 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---ERAVEPLIK 88 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---HHHHHHHHH
Confidence 466777777765433348889999998764 4567889999999999999999999998863 457889999
Q ss_pred Hhhccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCCcchHHHHHh
Q 000941 891 QIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVR 969 (1215)
Q Consensus 891 ~l~~~~-~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l~~~ 969 (1215)
.+.+++ ..|...+.+|..+-. +. .++.|.+...+++..+|..++.+||++.. ...+|.|.+.
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~------~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~ 151 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGD------ER--------AVEPLIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKA 151 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC------GG--------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCc------HH--------HHHHHHHHHhCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 987653 558888888876521 11 22344555567778899999999999843 4578999999
Q ss_pred hcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCc
Q 000941 970 TTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKP 1034 (1215)
Q Consensus 970 l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p 1034 (1215)
+.++++.+|..++.++..+-. ...++.+...++|++..||..|..+|....++.+
T Consensus 152 l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999986521 2446666777889999999999999998765543
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.70 E-value=1.5e-07 Score=97.65 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=137.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
.....+++.+++.|+++|..|+..|.+.-. ...++.+++.|+|+++.||..|+..|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~---- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---E---- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H----
Confidence 467789999999999999999999864321 2457788899999999999999999998753 2
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~ 163 (1215)
..++.|...+.++++.+|..+..+|..+-. ...+|.|...+.+. ++.||..++.+|+.+ |.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~----~~- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE--DWFVRIAAAFALGEI----GD- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHH----TC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHh----CC-
Confidence 345566666777777888888888876431 23556777777664 689999999999876 22
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l 237 (1215)
+..++.+...+.++++.||..|+.+|+.+.. . ..++.+...+.+++ ..+|..++.+++.+
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----~~~~~L~~~l~d~~--~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----RVRAAMEKLAETGT--GFARKVAVNYLETH 196 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----HHHHHHHHHHHHCC--HHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----hHHHHHHHHHhCCC--HHHHHHHHHHHHHH
Confidence 2345667777888899999999999998852 2 34555666666654 47888888888765
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.7e-07 Score=102.74 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=136.9
Q ss_pred CCccHHHHHHHHHHHHHHHhhCchhh-----HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCC
Q 000941 339 EDASWKVRRAAAKCLAALIVSRPEML-----SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNE 413 (1215)
Q Consensus 339 ~d~swkvR~~Aa~~L~~li~~~~~~l-----~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~ 413 (1215)
.+-.||.|..|...+..++...+... ...|..+.+.+-+.++|.+..|...+++++..++...+...
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~-------- 90 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS-------- 90 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----------
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 45679999999999998887654221 11244455566667799999999999999999887654210
Q ss_pred CChhhHHHHHHHHHHHHHHH-HhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHH
Q 000941 414 LNPRWLLKQEVSKIVKSINR-QLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 492 (1215)
Q Consensus 414 ~~~~~~L~~~~p~i~~~l~~-~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~ 492 (1215)
+.........+.+++.+.. .+.+....+|..++.++..+++... ....+++.+...+++++ +.++.+++.+
T Consensus 91 -~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Kn--pkv~~~~l~~ 162 (278)
T 4ffb_C 91 -LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKL--PKLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSC--HHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccC--HHHHHHHHHH
Confidence 1112334456677776664 4777788899999998888876432 22344566666777765 7899999999
Q ss_pred HHHHhccCCCCcch--hhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 493 TRLVLSSHSPPVFH--PYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 493 l~~l~~~~~~~~~~--~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
+..++..++..... +.++.+++.+...++|++..||..|..++..+.+.+|+
T Consensus 163 l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999887765554 46888999999999999999999999999999988765
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.64 E-value=3.1e-06 Score=80.23 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=155.4
Q ss_pred hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhc
Q 000941 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1215)
Q Consensus 167 ~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~ 246 (1215)
+...+++.++..|++.-|.|||.|+..+..++...++ ++..++..++..+++... -......-.++|.+++.-|..
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEa-IpltqeIa~a~G~la~i~Pe~-- 104 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEA-IPLTQEIAKAFGQMAKEKPEL-- 104 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCHHH--
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhccc-CchHHHHHHHHhHHHHhCHHH--
Confidence 5567889999999999999999999999999987654 577788888888877553 234445567888888876655
Q ss_pred cchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCCCCCccccccccc
Q 000941 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEE 326 (1215)
Q Consensus 247 ~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~ 326 (1215)
+..++|.++.... -.|+.+|=..-.+++.+++.+|..+. .++.-+..+++ +||-
T Consensus 105 --v~~vVp~lfanyr---igd~kikIn~~yaLeeIaranP~l~~----~v~rdi~smlt-skd~---------------- 158 (253)
T 2db0_A 105 --VKSMIPVLFANYR---IGDEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLS-SKNR---------------- 158 (253)
T ss_dssp --HHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTS-CSSH----------------
T ss_pred --HHhhHHHHHHHHh---cCCccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhc-CCCh----------------
Confidence 5678888887666 36888998888899999999996543 34443434443 4430
Q ss_pred chhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCC
Q 000941 327 EEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTK 406 (1215)
Q Consensus 327 ~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~ 406 (1215)
.=|-+|..-++.+-.+.+.+.. -.+|.|+..+.|+++.||..++.++..+...
T Consensus 159 -----------------~Dkl~aLnFi~alGen~~~yv~----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~------ 211 (253)
T 2db0_A 159 -----------------EDKLTALNFIEAMGENSFKYVN----PFLPRIINLLHDGDEIVRASAVEALVHLATL------ 211 (253)
T ss_dssp -----------------HHHHHHHHHHHTCCTTTHHHHG----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS------
T ss_pred -----------------HHHHHHHHHHHHHhccCccccC----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc------
Confidence 1155666555555555554444 4566777778999999999999999888642
Q ss_pred CcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 407 GQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 407 ~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
.+.+-.++....+.++|.+.-+....-..|+.+..
T Consensus 212 --------------npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 212 --------------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp --------------CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22255667777778888887666666666666553
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.59 E-value=3.4e-05 Score=89.45 Aligned_cols=354 Identities=12% Similarity=0.074 Sum_probs=206.9
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcc------------cchhHHHHHHHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA------------GDVSGLAVKCLAP 72 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~------------~~Vq~~A~~~l~~ 72 (1215)
.+..++..+.+.|++- |.- -| ..+....-.-..-....+++.+++.|+.++ +++|..|..+++.
T Consensus 33 ~~~~l~~~~~~~~~~~--~~~-~l-l~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD--MSR-TL-LAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp ------------CCHH--HHH-HH-HHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHH--HHH-HH-HHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 3455666667777773 211 11 112221110011234558888999998643 5999999999999
Q ss_pred HhhccChhhH-------HHHH-------HHHHHHhcCCC--cc-----hhh-------HHHHHHHHHHhccCchhhHHHH
Q 000941 73 LVKKVSEPRV-------VEMT-------DKLCIKLLNGK--DQ-----HRD-------IASIALKTIIAEVTTSSLAQSI 124 (1215)
Q Consensus 73 l~~~~~~~~~-------~~lv-------~~L~~~~~~~~--~~-----~r~-------~a~~aL~~~i~~~~~~~~~~~~ 124 (1215)
++..-++..- .+++ +.++.++.+.. .+ +++ -|.-+|+++-.+ ++....+
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~---~e~R~~i 185 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD---EEHRHAM 185 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS---HHHHHHH
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC---HHHHHHH
Confidence 9976554221 1222 33344443321 11 233 344555554221 1222222
Q ss_pred HH-hHhHHHHhhhhc---------cCCChhHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHhhhhcCChHHHHHHHHH
Q 000941 125 HT-SLTPQLTKGITL---------KDMNTEIRCECLDILCDVLHKFGNLMSN--DHERLLSALLPQLSANQASVRKKSVS 192 (1215)
Q Consensus 125 ~~-~l~p~L~~~l~~---------~~~~~~v~~~al~~L~~l~~~~g~~l~~--~~~~ll~~ll~~l~~~~~~vrk~a~~ 192 (1215)
.+ -.+|.|+..+.. ...++.++..|..+|..+...-...-.. .....++.++..|.+++..++..|+.
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 22 245666665531 0113668999999999997543321111 13456888999999988999999999
Q ss_pred HHHHHHhhcCHH---HH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccc--hhhhHHHHHHhhcccCC
Q 000941 193 CIASLASSLSDD---LL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH--LGDTVPVLIDYCTSASE 265 (1215)
Q Consensus 193 ~l~~l~~~~~~~---~~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~--l~~iip~ll~~~~~~~~ 265 (1215)
+|..++...++. .+ ...++.+++.|.+... ...++.++.++..++..+...=... -...+|.+.+.+....+
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~-~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKK-ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 999997642222 22 2467888887654432 4678888899999987443210111 24678888888874311
Q ss_pred C-cHHHHHHHHHHHHHHHH---hChhhhcccH-HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCC
Q 000941 266 N-DEELREYSLQALESFLL---RCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDED 340 (1215)
Q Consensus 266 ~-d~elre~al~~l~~l~~---~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d 340 (1215)
. ..++++.+..++..+.. ..++...... ...++.+.+.++.
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---------------------------------- 390 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---------------------------------- 390 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC----------------------------------
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC----------------------------------
Confidence 1 11589999999988876 3553322222 2356667777641
Q ss_pred ccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000941 341 ASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1215)
Q Consensus 341 ~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~ 400 (1215)
.+.++++.|+.+|..+....++....+. ...+|.|++.++..++.+|..+..++..++..
T Consensus 391 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 391 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1137899999999999866665544443 35789999888888899999999888888753
No 81
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.59 E-value=3.1e-07 Score=96.13 Aligned_cols=189 Identities=17% Similarity=0.115 Sum_probs=136.6
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh--H--
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V-- 82 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~--~-- 82 (1215)
..+..-+++.|+++|..|+..|.+......-....-.....++.++++|.+++++||..|+.+|+.++..-++.. +
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345556789999999999999977764321111111223578999999999999999999999999985322211 1
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhh
Q 000941 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1215)
Q Consensus 83 ~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g 161 (1215)
...++.|+..+.++++..|..++.+|..++...+. ....+. ...+|.|++.+.+. +..++..++.+|+.+.....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH--HHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 12578888888888888899999999998854321 222222 35789999988875 58999999999999986533
Q ss_pred hhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 000941 162 NLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1215)
Q Consensus 162 ~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1215)
..... .....++.+...+.++++.+|+.|..+|..++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 32211 223567888888888889999999999998864
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=1.7e-06 Score=91.08 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=140.9
Q ss_pred HHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc----cCcccchhHHHHHHHHHHhhc-------c
Q 000941 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----DDVAGDVSGLAVKCLAPLVKK-------V 77 (1215)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~D~~~~Vq~~A~~~l~~l~~~-------~ 77 (1215)
+...|-+.|...|.-|+..|...+.. +++..-..++.+++-+ .|+|..|...+...+..++.. +
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44556677777788888888887764 2344445555566644 399999999999999888753 3
Q ss_pred ChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHH
Q 000941 78 SEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 78 ~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~ 157 (1215)
.+.....++|.|+..+.++++.+|+.+-..++.+..-.| ...+.+.+.+++.++ ++.+|.++++.++.++
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li 195 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------PLKMTPMLLDALKSK--NARQRSECLLVIEYYI 195 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 444467899999999999999999988888887775433 245777888899776 5999999999999999
Q ss_pred HHhhhhhhhhHHHHH---HHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 000941 158 HKFGNLMSNDHERLL---SALLPQLSANQASVRKKSVSCIASLASSLSDDLLA 207 (1215)
Q Consensus 158 ~~~g~~l~~~~~~ll---~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~ 207 (1215)
+.+|..- ...+ +.+...++|++..||..|+.|+..+-...|+.++.
T Consensus 196 ~~~G~~~----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 196 TNAGISP----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHCSGG----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HhcCCCc----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999862 2245 88889999999999999999999888888887654
No 83
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.54 E-value=0.00031 Score=87.04 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHH-HHhccCcccchhHHHHHHHHHHhhccChh
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIV-VQQLDDVAGDVSGLAVKCLAPLVKKVSEP 80 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~l-l~~L~D~~~~Vq~~A~~~l~~l~~~~~~~ 80 (1215)
.|..++++++|+|++.|.+|+..|.+.++.++.. .--..++++..+ -++|.|++.+||..|..+|..|...-+.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~-~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCR-KLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHH-HHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHH-HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 3557899999999999999999999887643211 011223355544 56799999999999999999998654443
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.53 E-value=8.6e-06 Score=94.49 Aligned_cols=304 Identities=14% Similarity=0.118 Sum_probs=191.6
Q ss_pred CcchhhhhHHHHHHHhccccCCCChHHHHHHH----------HHHHHhccCcc--cc-----hhH-------HHHHHHHH
Q 000941 17 DKDFRYMATSDLLNELNKESFKADADLEVKLS----------NIVVQQLDDVA--GD-----VSG-------LAVKCLAP 72 (1215)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~----------~~ll~~L~D~~--~~-----Vq~-------~A~~~l~~ 72 (1215)
|++.||-|+..|.|.....+-..+...+..++ +.+++.+..++ .+ |+. +|+.+|+.
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 46999999999999988755444443344444 55566666553 23 544 99999998
Q ss_pred HhhccChh--hH--HHHHHHHHHHhcC-----------CCcchhhHHHHHHHHHHhccCchhhHHHH--HHhHhHHHHhh
Q 000941 73 LVKKVSEP--RV--VEMTDKLCIKLLN-----------GKDQHRDIASIALKTIIAEVTTSSLAQSI--HTSLTPQLTKG 135 (1215)
Q Consensus 73 l~~~~~~~--~~--~~lv~~L~~~~~~-----------~~~~~r~~a~~aL~~~i~~~~~~~~~~~~--~~~l~p~L~~~ 135 (1215)
+... ++. .+ ...++.|...+.. .+...+.-++.+|..++.+-+. ....+ ..-.+|.|+..
T Consensus 175 ls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~--~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 175 LSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHCHHHHHHHHHG
T ss_pred hcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc--cHHHHHHcCCcHHHHHHH
Confidence 8643 110 11 1234444444421 1234567788899988854321 22223 23468999998
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHhhh-hcCChHHHHHHHHHHHHHHHhhcCHH--HH---H
Q 000941 136 ITLKDMNTEIRCECLDILCDVLHKFGNLMSND--HERLLSALLPQ-LSANQASVRKKSVSCIASLASSLSDD--LL---A 207 (1215)
Q Consensus 136 l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~--~~~ll~~ll~~-l~~~~~~vrk~a~~~l~~l~~~~~~~--~~---~ 207 (1215)
|... +.+++..++.+|..+........... ....++.++.. +.+++..+++.|+.+|..++....+. .+ .
T Consensus 252 L~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~ 329 (458)
T 3nmz_A 252 LKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329 (458)
T ss_dssp GGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHST
T ss_pred HhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 8864 68999999999998854211111011 12345556665 34556789999999999999854332 22 3
Q ss_pred HHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHhh---hhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHH
Q 000941 208 KATIEVVRNLRSKGAKP--EMIRTNIQMVGALSRA---VGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALES 280 (1215)
Q Consensus 208 ~l~~~ll~~l~~~~~~~--~~~~~~i~~l~~l~~~---~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~ 280 (1215)
..++.+++.+....... ++++.+..++..++.. .+.. ...+ ...+|.+++.+. ..+.++++.|..++..
T Consensus 330 Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~~Lv~LL~---~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTLLQHLK---SHSLTIVSNACGTLWN 405 (458)
T ss_dssp THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHSS---CSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHHHHHHHHc---CCChHHHHHHHHHHHH
Confidence 57888888887654311 4677788888888862 2221 1111 346888888887 4678899999999999
Q ss_pred HHHhChhhhcccH-HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhh
Q 000941 281 FLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1215)
Q Consensus 281 l~~~~~~~~~~~l-~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~ 359 (1215)
++...++...... ...++.+..++.. .+.++|+.|+.+|..+...
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s----------------------------------~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHS----------------------------------KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTC----------------------------------SSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhC----------------------------------CCHHHHHHHHHHHHHHHcC
Confidence 9876664333222 2346666666531 1138999999999999988
Q ss_pred Cchh
Q 000941 360 RPEM 363 (1215)
Q Consensus 360 ~~~~ 363 (1215)
.|..
T Consensus 452 ~p~k 455 (458)
T 3nmz_A 452 RPAK 455 (458)
T ss_dssp CSCC
T ss_pred CHhh
Confidence 7754
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.45 E-value=9.5e-06 Score=88.64 Aligned_cols=194 Identities=13% Similarity=0.089 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhccCccc------------chhHHHHHHHHHHhhccChhh-H--HHHHHHHHH-HhcCCCcchhhHHHHH
Q 000941 44 EVKLSNIVVQQLDDVAG------------DVSGLAVKCLAPLVKKVSEPR-V--VEMTDKLCI-KLLNGKDQHRDIASIA 107 (1215)
Q Consensus 44 ~~~i~~~ll~~L~D~~~------------~Vq~~A~~~l~~l~~~~~~~~-~--~~lv~~L~~-~~~~~~~~~r~~a~~a 107 (1215)
..+.++..+..|.||.+ +-|..|...|..++....... + ...++.|+. .+.++++++|.-|+.+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45566777777788744 345566677777665322111 1 123667777 7777888899999999
Q ss_pred HHHHHhccCchhhHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHhhhhcCChHH
Q 000941 108 LKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH-ERLLSALLPQLSANQAS 185 (1215)
Q Consensus 108 L~~~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~-~~ll~~ll~~l~~~~~~ 185 (1215)
|+++..+-+ ..+..+.+ -.+|.|+..+.... +..++..|+.+|+.++.........+. ...++.+...+.+++..
T Consensus 106 Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 106 IGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHhCCH--HHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 999886543 23333333 47788888887532 578999999999999987665433322 24677888888888899
Q ss_pred HHHHHHHHHHHHHhhcCHH--HH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhh
Q 000941 186 VRKKSVSCIASLASSLSDD--LL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~--~~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
+|+.|+.+|+.++...++. .+ ...++.++..|.+++. .+++.++.+++.|+...+
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~--~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--PFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS--THHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh--hHHHHHHHHHHHHHhCCh
Confidence 9999999999998763322 22 2478888888887654 689999999999998744
No 86
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.41 E-value=2.2e-06 Score=89.48 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH-----HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCch
Q 000941 44 EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV-----EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118 (1215)
Q Consensus 44 ~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~-----~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~ 118 (1215)
.....+.+.++|++++++||..|+.+|+.++..-.+ ... ..++.|...+.+++++.|..++.+|..++.+.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-- 86 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-- 86 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--
Confidence 345677888999999999999999999999853222 211 457888888888888889999999998875332
Q ss_pred hhHHHHH-HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 000941 119 SLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1215)
Q Consensus 119 ~~~~~~~-~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~-~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1215)
.....+. ...+|.|+..+.+. ++.++..++.+|+.+.......... .....++.++..+.+++..+|+.|+.+|+.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1222222 34779999988875 5899999999999997644332221 224577888888998889999999999999
Q ss_pred HHhhcCHHH---H-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 000941 197 LASSLSDDL---L-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 197 l~~~~~~~~---~-~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
++...++.. . ...++.+++.+.+++ .++++.+..+++.++.
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHEN--EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHhc
Confidence 997543331 1 246788888887654 4788899999988764
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.8e-06 Score=93.00 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=137.3
Q ss_pred HHHHhcCCCcchhhhhHHHHHHHhccccCCCC-hH---HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-----
Q 000941 9 ILEKITGKDKDFRYMATSDLLNELNKESFKAD-AD---LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE----- 79 (1215)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~---~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~----- 79 (1215)
+-+++.|...-.|.-|+.+|.+.++....... +. ....+.+.+-+.+.|.|..|+..|++|+..++..+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56889999999999999999999876432211 11 1233455666788999999999999999999875543
Q ss_pred ----hhHHHHHHHHHHH-hcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 80 ----PRVVEMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 80 ----~~~~~lv~~L~~~-~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
.....+++.|+.. +.+++...|+.+..++-.+++.... ...++..+..++.+. ++.++.+++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-------~~~~~e~l~~~l~~K--npkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-------ITQSVELVIPFFEKK--LPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-------SHHHHHHHGGGGGCS--CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 2345677777776 5567777788777777777754332 123445666777765 5899999999999
Q ss_pred HHHHHhhhhhh---hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 000941 155 DVLHKFGNLMS---NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 155 ~l~~~~g~~l~---~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
.++..||.... +..+.+++.+...+.++++.||..|+.+++.+-.++|+.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99999997542 356778888888999999999999999999998888764
No 88
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.34 E-value=4.1e-05 Score=83.60 Aligned_cols=220 Identities=13% Similarity=0.092 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHhhhhh--hhccchhhhHHHHHH-hhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH-HHHHHHHH
Q 000941 226 MIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLID-YCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTL 301 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~--~~~~~l~~iip~ll~-~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l-~~ii~~~l 301 (1215)
.+..++..+..+++.... .|. --..+|.++. .+. ..++++|+.|.+++..++...|..-.-.+ ...++.++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~--~~G~l~~Lv~~lL~---s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFC--QLSGMHLLVGRYLE---AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHH--HTTHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHH--HcCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 445555666666553321 121 1235677777 776 46889999999999999987763211112 14667777
Q ss_pred HHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHH-HHHHHHHHhhhc
Q 000941 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFK 380 (1215)
Q Consensus 302 ~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~-~~i~p~Li~~~~ 380 (1215)
++++.+| +-.+|+.|+.+|+.+....+.....+. ...+|.|+..++
T Consensus 131 ~LL~~~~---------------------------------~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~ 177 (296)
T 1xqr_A 131 RLLDRDA---------------------------------CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177 (296)
T ss_dssp HHHHHCS---------------------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHccCC---------------------------------CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 7775221 127899999999999988776544443 357888888888
Q ss_pred ccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchh
Q 000941 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC 460 (1215)
Q Consensus 381 d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~ 460 (1215)
+.+..|+..++.++..+...... ....+.+ ..+++.+...|..++..++..++.+|+.++...+..
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~~~~------------~~~~vv~--~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVGHPE------------HKGTLCS--MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGG------------GHHHHHH--TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCChH------------HHHHHHH--cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 88899999999999998865210 1111211 245566667788888899999999999998764332
Q ss_pred hh------hhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHh
Q 000941 461 LA------DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1215)
Q Consensus 461 l~------~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1215)
.. ..+..++......++.+.....++.-+..++..++
T Consensus 244 ~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 244 VRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 11 12334444444445433212334444555555554
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.31 E-value=3.2e-05 Score=81.51 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHH-
Q 000941 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL- 420 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L- 420 (1215)
+||-|.+|...|...+...++.+......+++.+.-||.|.+..|-..+++.+..++...+.. +. .+
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~----------~y--~~~ 126 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT----------ET--PMS 126 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT----------TC--CCC
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc----------cc--cch
Confidence 389999999999988888887666666667787777888999999999998888887765321 00 11
Q ss_pred HHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccC
Q 000941 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 421 ~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1215)
......+++.+...+.+...++|..+-.++..+....|+ ..+++.+..++++++ .+.|.+++..+..++..+
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN--~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKN--ARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHhc
Confidence 223467778888888999999999999999888775443 235666777787765 789999999999999998
Q ss_pred CCCcchhhhhhhH---HHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 000941 501 SPPVFHPYIKALS---SPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1215)
Q Consensus 501 ~~~~~~~~l~~l~---p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1215)
|.. | ...+ |.+.+.++|++..|+..|+.++.++....|+
T Consensus 199 G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 199 GIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp CSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 764 2 3456 9999999999999999999999999887644
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.11 E-value=9.6e-05 Score=83.00 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=160.3
Q ss_pred HHHHHHHhcc-----------CcccchhHHHHHHHHHHhhccCh-hh-H---HHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 000941 47 LSNIVVQQLD-----------DVAGDVSGLAVKCLAPLVKKVSE-PR-V---VEMTDKLCIKLLNGKDQHRDIASIALKT 110 (1215)
Q Consensus 47 i~~~ll~~L~-----------D~~~~Vq~~A~~~l~~l~~~~~~-~~-~---~~lv~~L~~~~~~~~~~~r~~a~~aL~~ 110 (1215)
.++.|+.+|. ..++++|..|+.+|..+...-.+ +. + ...++.|...+.+++++.+..++.+|++
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5667777774 13578999999999999853221 11 2 2458899999988888899999999999
Q ss_pred HHhccCchhhHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHhhhhcCChH---
Q 000941 111 IIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND--HERLLSALLPQLSANQA--- 184 (1215)
Q Consensus 111 ~i~~~~~~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~--~~~ll~~ll~~l~~~~~--- 184 (1215)
+...-.. .....+.+ -.+|.|++.|.... +.+++..++.+|..+.......-... ....++.+...+.+++.
T Consensus 154 Ls~~~~~-~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 154 LSWRADV-NSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHTTCCH-HHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HhccCCH-HHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 8753111 22223332 36788888754432 57899999999988876221110111 23456677777765543
Q ss_pred -HHHHHHHHHHHHHHhh--cCHHH---H--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHH
Q 000941 185 -SVRKKSVSCIASLASS--LSDDL---L--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVP 254 (1215)
Q Consensus 185 -~vrk~a~~~l~~l~~~--~~~~~---~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip 254 (1215)
.+++.|+.+|..++.+ ..++. + ...++.+++.+++++ ...++.++.++..++...+.. ...+ ...+|
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~i~ 308 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARNPKD-QEALWDMGAVS 308 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSCHHH-HHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC--hHHHHHHHHHHHHHhCCCHHH-HHHHHHCCCHH
Confidence 5999999999999874 23332 1 236888898888754 368888899999988543322 2222 34689
Q ss_pred HHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhh
Q 000941 255 VLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1215)
Q Consensus 255 ~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~ 289 (1215)
.+.+.+. ..++++|+.|..++..++...|...
T Consensus 309 ~Lv~LL~---s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 309 MLKNLIH---SKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHTTTT---CSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998887 4678999999999999998877543
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.04 E-value=0.00039 Score=78.00 Aligned_cols=229 Identities=15% Similarity=0.206 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCHH--HH---HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHH
Q 000941 183 QASVRKKSVSCIASLASSLSDD--LL---AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPV 255 (1215)
Q Consensus 183 ~~~vrk~a~~~l~~l~~~~~~~--~~---~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ 255 (1215)
++.+|+.|..+|..++..-++. .+ ...++.+++.|++++ .++++.++.++..++..........+ ...+|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~--~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES--EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSC--HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCC--HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence 4579999999999998544322 23 457999999998654 47888999999999874211112222 245788
Q ss_pred HHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccH--HHHHHHHHHHhccCCCCCCCCCCCcccccccccchhhhcC
Q 000941 256 LIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1215)
Q Consensus 256 ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~ 333 (1215)
+++.+.. ..++++++.+..++..++..+++.-..+. ...++.+.+.+++..
T Consensus 175 Lv~lL~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~------------------------- 227 (354)
T 3nmw_A 175 LMECALE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS------------------------- 227 (354)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC-------------------------
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC-------------------------
Confidence 8876432 35788999999999999876653222222 356777777775210
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHh---hCchhhHHHH-HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcC
Q 000941 334 EYTDDEDASWKVRRAAAKCLAALIV---SRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQI 409 (1215)
Q Consensus 334 ~~~dd~d~swkvR~~Aa~~L~~li~---~~~~~l~~~~-~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~ 409 (1215)
+...+.+++.|+-+|..+.. ..++.-..+. ...+|.|+..+++.+..++..+..++..+.....
T Consensus 228 -----~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~------- 295 (354)
T 3nmw_A 228 -----QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP------- 295 (354)
T ss_dssp -----SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-------
T ss_pred -----CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-------
Confidence 00113788888888888775 3444333332 3468899999988888899999888887752100
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch
Q 000941 410 DNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1215)
Q Consensus 410 ~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~ 459 (1215)
.....+.+ .-.++.+.+.+.+++.++|..|..+|..|....|.
T Consensus 296 -----~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 296 -----KDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp -----HHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred -----HHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 00111111 23456677778888888999999999999876544
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.99 E-value=0.0016 Score=65.25 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh-hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~-~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
.....+..+...+.+++..++..++.++..+....++.+.. .+..++|.+...+.+++ ..+...|+.+++.++++.+
T Consensus 30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d--Ekval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN--EKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT--HHHHHHHHHHHHHHHTTCC
T ss_pred hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHcCCC
Confidence 34567788888999999999999999999999988887764 78888999998887654 6788899999999998753
Q ss_pred CCcchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHH
Q 000941 502 PPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1215)
Q Consensus 502 ~~~~~~-~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~ 580 (1215)
+.+ -+..+..++...+..+..-...+|...++.+ +. ......+...+.+.+. ..+..++..
T Consensus 108 ---L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv------------~~~~~~V~~~l~sLl~--Skd~~vK~a 169 (265)
T 3b2a_A 108 ---MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP------------LEDSKLVRTYINELVV--SPDLYTKVA 169 (265)
T ss_dssp ---BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB------------SCCCHHHHHHHHHHHT--CSSHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc------------ccchHHHHHHHHHHHh--CCChhHHHH
Confidence 334 5788888888888877777778888777766 21 1224556666666663 568999999
Q ss_pred HHHHHHHHHHhccCcccchhhhhHHHHHHhhc--cchhHHHHHHHHHHHHcCCCC
Q 000941 581 AISCMGLVISTFGDNLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLH 633 (1215)
Q Consensus 581 Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~s~~~ 633 (1215)
|+.++-.+....++. ..+..++.-+-+.++ ++..+..|+.++..+...+..
T Consensus 170 gl~~L~eia~~S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 170 GFCLFLNMLNSSADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp HHHHHHHHGGGCSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhhcccCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 999999998887651 233333433444444 445788899999999877655
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.99 E-value=0.002 Score=64.45 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=144.6
Q ss_pred hHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcc-cHHHHHHHHHHHhccCCCCCCCCCCCcccccccccchhh
Q 000941 252 TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1215)
Q Consensus 252 iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~-~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~~~~~~d~~ 330 (1215)
.+..++..+. ++|+.++..++.+++.+....|+.++. -++.+++.+.+..+. +|
T Consensus 34 ~l~~L~~LL~---dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~d--------------------- 88 (265)
T 3b2a_A 34 ALFLILELAG---EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-EN--------------------- 88 (265)
T ss_dssp HHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TT---------------------
T ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cc---------------------
Confidence 3445555555 688999999999999999998765543 556677776666641 00
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCC
Q 000941 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1215)
Q Consensus 331 ~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1215)
-||--.|.+|++.++..-|= -+.-|..+..++.+-.+++++-.+..+...++.+ +-+
T Consensus 89 ------------Ekval~A~r~L~~LLe~vpL-~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~--------- 145 (265)
T 3b2a_A 89 ------------EKVTIKALRALGYLVKDVPM-GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL--------- 145 (265)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---------
T ss_pred ------------hhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---------
Confidence 17788899999999998761 1346777888888778888898999988888776 211
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHH
Q 000941 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL 490 (1215)
Q Consensus 411 ~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al 490 (1215)
...+.++..+...+.+++..++.+|+.+|.++...-.+ ..++..++..+-..++.. ++.++.-|+
T Consensus 146 -----------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~~i~~~I~~eI~elL~~e--D~~l~e~aL 210 (265)
T 3b2a_A 146 -----------EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--SGHLTLILDEIPSLLQND--NEFIVELAL 210 (265)
T ss_dssp -----------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--CCCGGGTTTTHHHHHTCS--CHHHHHHHH
T ss_pred -----------cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--HHHHHHHHHHHHHHHcCC--CHHHHHHHH
Confidence 12567888888889889999999999999999864321 236777888888888765 478888899
Q ss_pred HHHHHHhccCCCCcchhhhhhhH
Q 000941 491 TFTRLVLSSHSPPVFHPYIKALS 513 (1215)
Q Consensus 491 ~~l~~l~~~~~~~~~~~~l~~l~ 513 (1215)
..+-.++..+-++...+-+..+.
T Consensus 211 d~Le~ils~pi~~~~~~~~~~~~ 233 (265)
T 3b2a_A 211 DVLEKALSFPLLENVKIELLKIS 233 (265)
T ss_dssp HHHHHHTTSCCCSCCHHHHHHHH
T ss_pred HHHHHHHcCcccHhHHHHHHHHH
Confidence 99999887654444433333333
No 94
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.87 E-value=0.011 Score=75.19 Aligned_cols=587 Identities=12% Similarity=0.086 Sum_probs=285.4
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhcc--CCChhHHHHHHHHHHHHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK--DMNTEIRCECLDILCDVL 157 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~--~~~~~v~~~al~~L~~l~ 157 (1215)
+.-..++..|.....+...++|..|-.+|..++..++. ....++|.+++.|+.. +.+.+.-.+|+.+|. .
T Consensus 129 ~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g------s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~--~ 200 (997)
T 1vsy_5 129 KLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG------SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLL--I 200 (997)
T ss_dssp SHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT------HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTT--S
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHh--h
Confidence 34467888898888888999999999999999987765 2456777888777651 225566778888765 2
Q ss_pred HHhhhhhh---hhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC--------------------------------
Q 000941 158 HKFGNLMS---NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS-------------------------------- 202 (1215)
Q Consensus 158 ~~~g~~l~---~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~-------------------------------- 202 (1215)
++++..+. .+...+.+.++.+...+.+.|++-+-.+...+.....
T Consensus 201 k~~~~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~ 280 (997)
T 1vsy_5 201 KKIHRKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKL 280 (997)
T ss_dssp HHHHHHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHH
T ss_pred hhhhhHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 23333333 3467778888887777777777666655444443110
Q ss_pred ---H------HHHHHHHHHHHHHhh-cCC--CChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHH
Q 000941 203 ---D------DLLAKATIEVVRNLR-SKG--AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1215)
Q Consensus 203 ---~------~~~~~l~~~ll~~l~-~~~--~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~el 270 (1215)
. +.+..+...+++..+ +.. |+ ....+..++-.+ .-....|+=+.++.++++.+. ++.+.+
T Consensus 281 ~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk--~~~~~~~~l~~l---~~r~d~~~~~~~v~~~~~~l~---~dhp~~ 352 (997)
T 1vsy_5 281 AKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWK--IRMFILRFVTQI---QSNLESKPDKRAVFSIISQIS---TKHPEI 352 (997)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSC--HHHHHHHHHHHH---TCCSSCCCCHHHHHHHHGGGG---GCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHH--HHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHhhc---CCCHHH
Confidence 0 011234444444442 234 63 222222221222 112335566788889988887 588999
Q ss_pred HHHHHHHHHHHHHhChh-hhcccHHHHHHHHHHHhccCCCC-C--CCCCCCcccccccccchhhhcCCCCCCC-Ccc---
Q 000941 271 REYSLQALESFLLRCPR-DISSYCDEILHLTLEYLSYDPNF-T--DNMEEDSDDEAYEEEEEDESANEYTDDE-DAS--- 342 (1215)
Q Consensus 271 re~al~~l~~l~~~~~~-~~~~~l~~ii~~~l~~l~~dpn~-~--~~~d~d~~~~~~~~~~d~~~~~~~~dd~-d~s--- 342 (1215)
|+.|..++..+...... ...+| + .+.+... .+.|+. . ++.+.+-......+.+++++...|-|.. ...
T Consensus 353 R~~a~~~l~~il~~~k~~~~~~~--d-~~~~~~~-~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~ 428 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISLSDYEY--D-ITRAYKN-EFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLC 428 (997)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT--C-GGGGSSS-SCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTB
T ss_pred HHHHHHHHHHHHHHHHhhhcCCC--c-HHHhhcc-ccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEee
Confidence 99999988777654221 11111 0 0000000 011110 0 0000000000000000111101122211 111
Q ss_pred H----HH----------HHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhc-ccCCC
Q 000941 343 W----KV----------RRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG-NVTKG 407 (1215)
Q Consensus 343 w----kv----------R~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~-~~~~~ 407 (1215)
| +| ...-..++..+- ..-+ .+++++++..+++- ++..+.-+..-+..+..+++-.. +.
T Consensus 429 Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~-~~~~--~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~--- 501 (997)
T 1vsy_5 429 WGRLMYVMSPKALKLNLRENELEVLKTAG-HLLT--REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGF--- 501 (997)
T ss_dssp CCSEEEEECTTCCCCCCCHHHHHHHHHHH-TTCC--HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTT---
T ss_pred eCCceeEeCCCCCCCCCCHHHHHHHHHHH-hhcC--HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhccc---
Confidence 1 00 111111122211 1101 34555666555422 22222223333444444543221 00
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch----hhhhhhhhhhHHHHHhhcC-CCCc
Q 000941 408 QIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD----CLADHIGSLIPGIEKSLND-KSST 482 (1215)
Q Consensus 408 ~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~----~l~~~~~~lv~~l~~~l~d-~~~~ 482 (1215)
+. ..+|.+.+.+.+...+++...+.++..++..++..... .......-+.|.+.+++.+ -+.+
T Consensus 502 -------~~-----~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~e 569 (997)
T 1vsy_5 502 -------CE-----LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHD 569 (997)
T ss_dssp -------CC-----CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred -------ch-----hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCch
Confidence 00 12455556666655665555566777777777654311 1233444556666666663 2211
Q ss_pred chhHHHH-----------------------------------------HHHHHHHhccCCCCcchhhhhhhHHHHHHHhc
Q 000941 483 SNLKIEA-----------------------------------------LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG 521 (1215)
Q Consensus 483 ~~~~~~a-----------------------------------------l~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 521 (1215)
..--..+ +.++..++...+. .+ +....++..+. +.
T Consensus 570 t~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~w-r~-~~~~~~l~~~~--l~ 645 (997)
T 1vsy_5 570 AFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF-RA-PDVGKLFDELV--FD 645 (997)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTT-SS-CCCHHHHHHCC--SC
T ss_pred hHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcc-cc-ccHHHHHHHHH--hC
Confidence 1101110 1111111111110 00 11233333333 55
Q ss_pred CCchHHHHHHHHHHHHHHHhccCC-C--------------cCC---CCCChhcHHHHHHHHHHHhhc------c-CCCHH
Q 000941 522 ERYYKVTAEALRVCGELVRVLRPS-V--------------EGL---GFDFKPYVQPIYNAIMSRLTN------Q-DQDQE 576 (1215)
Q Consensus 522 d~~~~v~~~al~~l~~l~~~~~~~-~--------------~~~---~~~~~~~l~~l~~~l~~~l~~------~-d~~~~ 576 (1215)
+++..|++..-.++..++.....+ . +.. ...-.+.+...++.+++.+.. . ...+.
T Consensus 646 h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~ 725 (997)
T 1vsy_5 646 HPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQF 725 (997)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTT
T ss_pred CChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCcccc
Confidence 666667765555665555443100 0 000 001112323323333344431 0 01111
Q ss_pred HHHHHH----HHHHHHHHhccCc----ccchhhh-hHHHHHHhhccchh---HHH-HHHHHHHHHcCCCCCchhHHHHHH
Q 000941 577 VKECAI----SCMGLVISTFGDN----LGAELPA-CLPVLVDRMGNEIT---RLT-AVKAFAVIAASPLHIDLTCVLEHV 643 (1215)
Q Consensus 577 Vr~~Ai----~~lg~l~~~~~~~----l~~~~~~-~l~~L~~~L~~e~~---r~~-a~~al~~i~~s~~~~~~~~~l~~~ 643 (1215)
.+..+. +.+-.+...++.. +.++++. ++|.++...+.+.. ... |..++..++..+.. .++++.+
T Consensus 726 ~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~---~~~~~~~ 802 (997)
T 1vsy_5 726 IKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR---KNHVAAI 802 (997)
T ss_dssp TTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC---HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC---HHHHHHH
Confidence 222332 3333444444433 3445555 66666544332221 222 44556655544332 5667777
Q ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCC-hhhHHHHHHHHHHHhh
Q 000941 644 IAELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD-LHMTALALELCCTLMA 713 (1215)
Q Consensus 644 l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d-~~~~~~al~~l~~l~~ 713 (1215)
+..+..... ++++ .|.+++..+..+.-+.---+.......+...+..+|.++. .++|+.|-.+|+.++.
T Consensus 803 l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~ 873 (997)
T 1vsy_5 803 VDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH 873 (997)
T ss_dssp HHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 777766665 5688 9999999998887765544565666778888889999999 9999999999999987
No 95
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.79 E-value=0.00064 Score=86.21 Aligned_cols=389 Identities=11% Similarity=0.063 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh-------hhHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhc
Q 000941 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-------PRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAE 114 (1215)
Q Consensus 43 ~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~-------~~~~~lv~~L~~~~~-~~~~~~r~~a~~aL~~~i~~ 114 (1215)
..+.+.+.+-.+..|.+..-|..|+..++-++...+. ..|.-+.+.|-+.+. +-+++....=..++..++.+
T Consensus 505 ~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~ 584 (997)
T 1vsy_5 505 NMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAV 584 (997)
T ss_dssp CGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcC
Confidence 3455666666677888888899999999988864332 345566666666666 35666666667777777776
Q ss_pred cCchhhHHHHHHhHhHHHHhhhh------c-cCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHH
Q 000941 115 VTTSSLAQSIHTSLTPQLTKGIT------L-KDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVR 187 (1215)
Q Consensus 115 ~~~~~~~~~~~~~l~p~L~~~l~------~-~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vr 187 (1215)
..+. - .+.|++.+. + +....-.....+..|..++...|--+.. ...++..++ ++++-..||
T Consensus 585 ~Dpr-R--------~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VR 652 (997)
T 1vsy_5 585 VDLR-R--------SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVR 652 (997)
T ss_dssp SCGG-G--------CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHH
T ss_pred CChh-h--------hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHH
Confidence 5541 1 123333221 1 1111222333455566666555544332 455666666 788878999
Q ss_pred HHHHHHHHHHHhhcC-------H---------------------HHHHHHHHHHHHHhhc---------CC--CChHH--
Q 000941 188 KKSVSCIASLASSLS-------D---------------------DLLAKATIEVVRNLRS---------KG--AKPEM-- 226 (1215)
Q Consensus 188 k~a~~~l~~l~~~~~-------~---------------------~~~~~l~~~ll~~l~~---------~~--~~~~~-- 226 (1215)
++....|+.+....- + ..+...+..+++.+.. ++ .++.-
T Consensus 653 e~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~ 732 (997)
T 1vsy_5 653 QAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFY 732 (997)
T ss_dssp HHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHH
T ss_pred HHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHH
Confidence 999888887765441 0 1112222223333321 11 00111
Q ss_pred -HHHHHHHHHHHHhhh-hhhhccchhh-hHHHHHHhhcccCCCcHHHHHH-HHHHHHHHHHhChhhhcccHHHHHHHHHH
Q 000941 227 -IRTNIQMVGALSRAV-GYRFGPHLGD-TVPVLIDYCTSASENDEELREY-SLQALESFLLRCPRDISSYCDEILHLTLE 302 (1215)
Q Consensus 227 -~~~~i~~l~~l~~~~-~~~~~~~l~~-iip~ll~~~~~~~~~d~elre~-al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1215)
.++.+.-+.+...+. ...+.||++. ++|.++...+. .+++|+... |..++..+. .. ++-+..++.++.
T Consensus 733 ~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~--~d~~eL~~~~a~~~l~~ls-~~-----~~~~~~~~~~l~ 804 (997)
T 1vsy_5 733 RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKH--KDVCALASLDPVRLYAGLG-YM-----PIRKNHVAAIVD 804 (997)
T ss_dssp HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSC--SHHHHHTTCCSHHHHHHTS-SS-----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhc--CcHHHHHhhHHHHHHHHHh-cC-----CCCHHHHHHHHH
Confidence 123333332222221 2347778877 88888877653 233366655 444444432 11 222334444444
Q ss_pred HhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHHHHhhhcc
Q 000941 303 YLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPKLIDRFKE 381 (1215)
Q Consensus 303 ~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~-~~~l~~~~~~i~p~Li~~~~d 381 (1215)
.+..- -..+.|| .|.++...+..+.-.. .-.-..-...+...+++.+.|
T Consensus 805 ~l~~~-----------------------------~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 805 YVCSS-----------------------------NVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp HSSCT-----------------------------TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred HHHHH-----------------------------HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 43200 0113589 9999988887776431 100011223455666677899
Q ss_pred cc-hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHh-c-----------ccChhhHHHHHH
Q 000941 382 RE-ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQL-R-----------EKSIKTKVGAFS 448 (1215)
Q Consensus 382 ~e-~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L-~-----------~~~~~~r~~~~~ 448 (1215)
++ -+||..+..+|+.+++..+ +.... ..++..+.+.+ + .+....|.+|.-
T Consensus 855 ~q~~EVRe~Aa~tLsgll~c~~-------------~~~~~----~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 855 EQFVEVRVRAASILSDIVHNWK-------------EEQPL----LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCC-------------SHHHH----HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCC-------------chhhH----HHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 99 9999999999999997641 10011 12222222221 1 112257889999
Q ss_pred HHHHHHHhCchhh--hhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000941 449 VLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 449 ~l~~L~~~~~~~l--~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
.|+.++.++|-.. -+.+|+++..+.....++ ..++..+=.+++.+-++|.
T Consensus 918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~---~~i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTS---GMTGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSC---SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCC---CchHHHHHHHHHHHHhccc
Confidence 9999999988765 457888877777666653 3477777788888888885
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.78 E-value=0.00029 Score=77.99 Aligned_cols=302 Identities=15% Similarity=0.136 Sum_probs=154.6
Q ss_pred cHHHHHHHHHHHHHHHhh--CchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhH
Q 000941 342 SWKVRRAAAKCLAALIVS--RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1215)
Q Consensus 342 swkvR~~Aa~~L~~li~~--~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (1215)
..|.|++-.+++..+..+ +|+. ....+.+.+++.|..++...|.-++-.+..+.+. +
T Consensus 41 ~~kc~~~l~kll~l~~~G~~f~~~---e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~---------------~--- 99 (355)
T 3tjz_B 41 PRKCAHILTKILYLINQGEHLGTT---EATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI---------------A--- 99 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT---------------S---
T ss_pred HHHHHHHHHHHHHHHHCCCCCchh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---------------H---
Confidence 457788888888877755 3322 1234556667778777777777655444433221 0
Q ss_pred HHHHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 420 LKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 420 L~~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
++.+ -+++.+.+-++++++-.|-.|+.+++.+.. .+-++.+.+.+.+++.|++ +.+|..|+-+...++..
T Consensus 100 -~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~------~~m~~~l~~~lk~~L~d~~--pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 100 -EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD------STMLQAIERYMKQAIVDKV--PSVSSSALVSSLHLLKC 169 (355)
T ss_dssp -SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC------TTTHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHTTT
T ss_pred -HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhcc
Confidence 1112 456788888999999899888888887753 2357778888999999987 78998888777777654
Q ss_pred CCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhcc-CCCHHHH
Q 000941 500 HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-DQDQEVK 578 (1215)
Q Consensus 500 ~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~-d~~~~Vr 578 (1215)
. | ..+..++..+...+.|+++-|...|+.++.++.+.- ...+..+++. +... -.++-..
T Consensus 170 ~-p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----------~~a~~kLv~~----l~~~~l~~~~~q 229 (355)
T 3tjz_B 170 S-F----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-----------RLAVSKMISK----FTRHGLKSPFAY 229 (355)
T ss_dssp C-H----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH----HHSSCCSCHHHH
T ss_pred C-H----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----------hHHHHHHHHH----HhcCCCcChHHH
Confidence 2 2 245667778888889999999999999988886421 1123334332 2221 1122211
Q ss_pred HHHHHHHHHHHHhccCcc-cchhhhhHHHHHHhhcc--chhHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhh
Q 000941 579 ECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKAN 655 (1215)
Q Consensus 579 ~~Ai~~lg~l~~~~~~~l-~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~ 655 (1215)
-.-+..++ ..+..- ...-..+++++...|++ +.+...|++++-.+-..+ ...+...+..|..++.+++
T Consensus 230 ~~llr~l~----~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-----~~~~~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 230 CMMIRVAS----RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-----AKELAPAVSVLQLFCSSPK 300 (355)
T ss_dssp HHHHHHHT----CC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSS
T ss_pred HHHHHHHH----HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHcCCC
Confidence 11122221 221111 11234566666666654 446666777776553321 2223445566778888889
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhhhhcCCCChhhHHHHHHHH
Q 000941 656 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELC 708 (1215)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l 708 (1215)
..+|..++..|..++...+.. +...-..+-.+++++|..++.+|+.+|
T Consensus 301 ~niryvaLr~L~~l~~~~P~~-----v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPSA-----VTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 999999999999999877653 334455667888899988877766554
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.78 E-value=0.0048 Score=72.50 Aligned_cols=224 Identities=14% Similarity=0.206 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHH-HHH--HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSK-LYE--EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~-~~~--~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (1215)
..+|..+.++|..+..++|+.... ++. .-+|.|+..++|+.+.+|.+++..+..+.+.-. .
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~----------------~ 199 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG----------------A 199 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH----------------H
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH----------------H
Confidence 489999999999999999975554 332 467889999999999999999988888876421 2
Q ss_pred HHH------HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCch---hhhh--hhhhhhHHHHHhhcCCCCc----c-
Q 000941 420 LKQ------EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD---CLAD--HIGSLIPGIEKSLNDKSST----S- 483 (1215)
Q Consensus 420 L~~------~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~---~l~~--~~~~lv~~l~~~l~d~~~~----~- 483 (1215)
++. .++.++..+...=.-+...+.+.|+.++..|....+. .|.+ +++.+.+.+ ...... .
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL----~~~~~~~~W~~Q 275 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF----EVGDENSGWSAQ 275 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG----CCCSCSSCCCHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh----CCCccccccHHH
Confidence 222 3455555544321112235788999999999977543 2322 455555433 211110 0
Q ss_pred h--hHHHHHHHHHHHhccCCCC--c--chh--hhhhhHHHHHHHhcCC--chHHHHHHHHHHHHHHHhccCCCcC-----
Q 000941 484 N--LKIEALTFTRLVLSSHSPP--V--FHP--YIKALSSPVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEG----- 548 (1215)
Q Consensus 484 ~--~~~~al~~l~~l~~~~~~~--~--~~~--~l~~l~p~l~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~----- 548 (1215)
. -.+.++.+++.++....+. . -+. +-..+++.++..+-.+ ...++.+|+.+++++++.-......
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 1 1124677777777653320 0 011 1223556666655432 3478899999999887531110000
Q ss_pred -CCCCChhcHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 000941 549 -LGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 590 (1215)
Q Consensus 549 -~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~Ai~~lg~l~~ 590 (1215)
....-.|. +...++..+. ......+|-+|++|+..++.
T Consensus 356 vp~~~~~p~---li~lL~~~~~-~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 356 APSNPPRPA---IVVLLMSMVN-ERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp ESSSSCEEH---HHHHHHHHTC-TTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCh---HHHHHHHHhc-ccccHHHHHHHHHHHHHHHh
Confidence 00001222 3333333332 23358889999999887663
No 98
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.70 E-value=0.011 Score=66.14 Aligned_cols=310 Identities=14% Similarity=0.127 Sum_probs=176.2
Q ss_pred CcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCC
Q 000941 17 DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG 96 (1215)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~ 96 (1215)
++....+|..-+-++.. .-++..++-++.++.+.+|.+..||.+|+|-|..+.+. +.+..+++.|.+.+..+
T Consensus 41 ~~k~K~LaaQ~I~kffk-----~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtd 112 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFK-----HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTD 112 (507)
T ss_dssp CHHHHHHHHHHHHHHGG-----GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHh-----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhcc
Confidence 34455556555554443 34577888999999999999999999999999988865 67899999999999877
Q ss_pred CcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh-hhhH-HHHHHH
Q 000941 97 KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM-SNDH-ERLLSA 174 (1215)
Q Consensus 97 ~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l-~~~~-~~ll~~ 174 (1215)
++..+++..-+|..++..-| +..+..++..+... +..+|+.++..|.+=+...+..+ ..+. .-+...
T Consensus 113 d~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 77778888888887774322 12222333333332 46889888887777666665543 2222 233334
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh--cC--CCChHHHHHHHHHHHHHHhhh-----hhhh
Q 000941 175 LLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLR--SK--GAKPEMIRTNIQMVGALSRAV-----GYRF 245 (1215)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~--~~--~~~~~~~~~~i~~l~~l~~~~-----~~~~ 245 (1215)
+...+.+-...==.--+..|+.+--+-...-.+.+++.+.+... .+ ..+.+.....++|+..-.-.. +.+|
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkF 261 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRF 261 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHH
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHH
Confidence 44444332221111222333222222222223455555555432 11 112455556666665432211 1344
Q ss_pred ccch-hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhCh--hhhcccHHHHHHHHHHHhccCCCCCCCCCCCccccc
Q 000941 246 GPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP--RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEA 322 (1215)
Q Consensus 246 ~~~l-~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~--~~~~~~l~~ii~~~l~~l~~dpn~~~~~d~d~~~~~ 322 (1215)
..|+ ..|+|.+- .+... ++.++.+-..+.++..++.+|+ +.....++.+...+++||=--|+ +.+.+ +++
T Consensus 262 v~y~~~kIlP~l~-~L~e~-~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~---~~~~~-~~~- 334 (507)
T 3u0r_A 262 VTYFCEQVLPNLG-TLTTP-VEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPE---EAENG-ENA- 334 (507)
T ss_dssp HHHHHHHTGGGTT-CCCCC---CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------
T ss_pred HHHHHHhhccchh-hcccc-ccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcc---ccccc-ccc-
Confidence 4433 45555322 22211 1122345567888888888888 45667889999988887743332 10000 000
Q ss_pred ccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhh
Q 000941 323 YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1215)
Q Consensus 323 ~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l 364 (1215)
.+++....|..=+|-..++..+....|+.+
T Consensus 335 ------------~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 335 ------------GNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred ------------cccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 011223456666788888888888888765
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.53 E-value=0.00019 Score=79.53 Aligned_cols=225 Identities=14% Similarity=0.067 Sum_probs=95.6
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHH
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv 86 (1215)
+.|...|+++++-+|-+|+-.|++.. +++..+.+.+.+-+++.|+++-||+.|+-|...+.+..++ .+...+
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~-------~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~~~~ 178 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQIT-------DSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVKRWV 178 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC-------CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHHTTH
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHHHHH
Confidence 34444455555555555555554442 3455677777778888888888888888888777765443 445566
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhh-hhccCCChhHHHHHHHHHHHHHHHhhhhh-
Q 000941 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKG-ITLKDMNTEIRCECLDILCDVLHKFGNLM- 164 (1215)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~-l~~~~~~~~v~~~al~~L~~l~~~~g~~l- 164 (1215)
+.+-+.+.+.++-+.-.|..+|..+.. .. ...+.++++.+..+ +. ++-.+...+.++..+ +..=
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~-~d-----~~a~~kLv~~l~~~~l~----~~~~q~~llr~l~~~----~~~d~ 244 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVRK-ND-----RLAVSKMISKFTRHGLK----SPFAYCMMIRVASRQ----LEDED 244 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHT-TC-----HHHHHHHHHHHHSSCCS----CHHHHHHHHHHHTCC---------
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHh-hc-----hHHHHHHHHHHhcCCCc----ChHHHHHHHHHHHHh----ccccc
Confidence 666665555444333222222333322 11 11234444444321 10 122222222222221 2111
Q ss_pred hhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh
Q 000941 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1215)
Q Consensus 165 ~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~ 244 (1215)
......+.+.+.+.+++.++.|-=.|+.++-.+.. .+...+...+..+...+.+++ +..|-.++..+..++...|..
T Consensus 245 ~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d--~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 245 GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK--AALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHSSS--SSSHHHHHHCC----------
T ss_pred hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHCcHH
Confidence 11235677888888888888888888888877655 333334333333333344433 357778888888888887777
Q ss_pred hccchhhhHHHH
Q 000941 245 FGPHLGDTVPVL 256 (1215)
Q Consensus 245 ~~~~l~~iip~l 256 (1215)
+..+-.+|...+
T Consensus 322 v~~~n~~ie~li 333 (355)
T 3tjz_B 322 VTACNLDLENLV 333 (355)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHc
Confidence 666655555443
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.51 E-value=0.00056 Score=76.83 Aligned_cols=242 Identities=13% Similarity=0.173 Sum_probs=157.1
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhh--hh-hhhhHHHHHhh-cCCC-------CcchhHHHHHHHHHH
Q 000941 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLAD--HI-GSLIPGIEKSL-NDKS-------STSNLKIEALTFTRL 495 (1215)
Q Consensus 427 i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~--~~-~~lv~~l~~~l-~d~~-------~~~~~~~~al~~l~~ 495 (1215)
+...+..-|-++.|.+|.+|...|.++...++.+... .. ..+.-.++-.+ -|+. ....+|..+.++++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5566666777889999999999999999988643211 00 03322222222 2331 124699999999999
Q ss_pred HhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCH
Q 000941 496 VLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQ 575 (1215)
Q Consensus 496 l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~ 575 (1215)
+ ...+++ + .++-.++..+..+.|+++-.++-.+.-+ .. +..-++.+++.++..|. |.|.
T Consensus 255 L-~hLp~e-~-----~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~D--------LL~~Ld~Vv~aVL~GL~--D~DD 313 (800)
T 3oc3_A 255 I-YPLIGP-N-----DIIEQLVGFLDSGDWQVQFSGLIALGYL----KE--------FVEDKDGLCRKLVSLLS--SPDE 313 (800)
T ss_dssp H-TTTSCS-C-----CHHHHHTTGGGCSCHHHHHHHHHHHHHT----GG--------GCCCHHHHHHHHHHHTT--CSSH
T ss_pred H-HhCChh-H-----HHHHHHHhhcCCCCeeehhhhHHHHHHH----HH--------HHHHHHHHHHHHHhhcC--Cccc
Confidence 8 555443 1 2333333455677889998888776555 11 11127888999998887 6678
Q ss_pred HHHHHHHHHHHHHHHhccCcccchhhhhHHHHHHhhccc-h---hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHH
Q 000941 576 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE-I---TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651 (1215)
Q Consensus 576 ~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l~~L~~~L~~e-~---~r~~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L 651 (1215)
+||..|..++-.++ ....++.++.++.+.|.+. . .....+..|+.++..+......| .++|.|-+++
T Consensus 314 DVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp---~LVPRL~PFL 384 (800)
T 3oc3_A 314 DIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPP---ERLKDIFPCF 384 (800)
T ss_dssp HHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCS---GGGGGTGGGG
T ss_pred HHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccCh---HHHHHHHhhh
Confidence 99999998887655 2235777777777777542 1 12334566666663322111122 7899999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHh-hhhcCCCChhhHHHHHHHHH
Q 000941 652 RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVEL-STLISDSDLHMTALALELCC 709 (1215)
Q Consensus 652 ~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l-~~~l~~~d~~~~~~al~~l~ 709 (1215)
+.+-..+|.+++.++..+. . ..++.-+ +.++-+.+..+++.++++|.
T Consensus 385 RHtITSVR~AVL~TL~tfL-------~----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVKNLS-------E----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TCSSHHHHHHHHHHTTTCC-------C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHH-------h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999998765 1 2233333 34556788888888888875
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.46 E-value=0.24 Score=61.05 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=98.2
Q ss_pred HhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 000941 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1215)
Q Consensus 126 ~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~-l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1215)
+.++|. ++.|++. +++.|..|+.+|+.++...... +.-....+...+.+.|.|++..||..|..+|..|+..-+.+
T Consensus 34 ~~i~Pl-l~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPV-LKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHH-HHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHH-HHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 455664 4567764 6889999999999998532211 11122333445566788999999999999999999877665
Q ss_pred HHH-----HHHHHHHHHhhcC-------C-----CCh-------HHHHHHHHHHHHHHhhhhhhhccc-hhhhHHHHHHh
Q 000941 205 LLA-----KATIEVVRNLRSK-------G-----AKP-------EMIRTNIQMVGALSRAVGYRFGPH-LGDTVPVLIDY 259 (1215)
Q Consensus 205 ~~~-----~l~~~ll~~l~~~-------~-----~~~-------~~~~~~i~~l~~l~~~~~~~~~~~-l~~iip~ll~~ 259 (1215)
... .+++.+...+++. . ... +.....+.++..++......+... -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 322 3566665554321 0 001 122345677788887665433221 12455666655
Q ss_pred hcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 260 CTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 260 ~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
+...+....+++..++++|..+....++
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 5432234568999999999888876653
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.45 E-value=0.00038 Score=78.13 Aligned_cols=241 Identities=16% Similarity=0.195 Sum_probs=158.9
Q ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhccccC------CCChHHH-HHHHHHHHHhcc----Cc-ccchhHHHHHHHHHHh
Q 000941 7 AAILEKITGKDKDFRYMATSDLLNELNKESF------KADADLE-VKLSNIVVQQLD----DV-AGDVSGLAVKCLAPLV 74 (1215)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~------~~~~~~~-~~i~~~ll~~L~----D~-~~~Vq~~A~~~l~~l~ 74 (1215)
..++..+-|+...+|..|...|+..+..... ..+.+.. +-++-..+.-+. |. -.-||..|+++||.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 4567778899999999999999988875321 1111111 112222222223 33 357999999999999
Q ss_pred hccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 75 KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 75 ~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
..++++ ..++..|...+..+..++|.++..+||.+ .++- .. ++.++|.++.+|++. +.+||..|.++|.
T Consensus 256 ~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL-----~~-Ld~Vv~aVL~GL~D~--DDDVRAVAAetLi 324 (800)
T 3oc3_A 256 YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFV-----ED-KDGLCRKLVSLLSSP--DEDIKLLSAELLC 324 (800)
T ss_dssp TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGC-----CC-HHHHHHHHHHHTTCS--SHHHHHHHHHHHT
T ss_pred HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHH-----HH-HHHHHHHHHhhcCCc--ccHHHHHHHHHhh
Confidence 877776 35666666555667789999999999988 3221 11 677889999999986 6899999999998
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhhhhcCCh--HHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCChHHHHHHH
Q 000941 155 DVLHKFGNLMSNDHERLLSALLPQLSANQ--ASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNI 231 (1215)
Q Consensus 155 ~l~~~~g~~l~~~~~~ll~~ll~~l~~~~--~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~i 231 (1215)
.++ .....+.++..++.+|.+-+ +.--...+..|+.+..+-... ....++|.+.--++++- +.+|+.++
T Consensus 325 PIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtI--TSVR~AVL 396 (800)
T 3oc3_A 325 HFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPV--PEVRTSIL 396 (800)
T ss_dssp TSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSS--HHHHHHHH
T ss_pred hhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCc--HHHHHHHH
Confidence 776 22456777888877776532 122334455666655443211 11256666666666654 37898888
Q ss_pred HHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHH
Q 000941 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1215)
Q Consensus 232 ~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~ 279 (1215)
.++.++. ...++..+.+.+-- ++++++++.+.+++.
T Consensus 397 ~TL~tfL----------~~~~LRLIFQNILL--E~neeIl~lS~~VWk 432 (800)
T 3oc3_A 397 NMVKNLS----------EESIDFLVAEVVLI--EEKDEIREMAIKLLK 432 (800)
T ss_dssp HHTTTCC----------CHHHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred HHHHHHH----------hhhHHHHHHHHHHh--CCcHHHHHHHHHHHH
Confidence 8886665 34455555544432 578999999988875
No 103
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.33 E-value=0.04 Score=64.78 Aligned_cols=313 Identities=15% Similarity=0.173 Sum_probs=182.2
Q ss_pred HHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh-------
Q 000941 172 LSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY------- 243 (1215)
Q Consensus 172 l~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~------- 243 (1215)
++.+..-+++.. ..-|+.|+.+|-.++.-.+...-..-++.++..|++...+.+..+.+++++..+....+.
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~ 102 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS 102 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 333444443332 367999999999998877776666668889999988766678888888888666543221
Q ss_pred ---------hhccch---hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHH---HHHHHHHHHhccCC
Q 000941 244 ---------RFGPHL---GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD---EILHLTLEYLSYDP 308 (1215)
Q Consensus 244 ---------~~~~~l---~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~---~ii~~~l~~l~~dp 308 (1215)
.|...+ +.-++.+++.++ .+|..+|-++++.++.++...|+.....+- .-++.+...+. |
T Consensus 103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~---~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-d- 177 (651)
T 3grl_A 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLE---EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-D- 177 (651)
T ss_dssp -----CHHHHHHHHHHHSTHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-C-
T ss_pred cccchHHHHHHHHHHHcCCccHHHHHHHhc---CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-C-
Confidence 111111 344888888887 578899999999999999999875554432 34555655553 0
Q ss_pred CCCCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHH-HHHHHHHHHHhhhcccch---
Q 000941 309 NFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK-LYEEACPKLIDRFKEREE--- 384 (1215)
Q Consensus 309 n~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~-~~~~i~p~Li~~~~d~e~--- 384 (1215)
..-.+|..|..+|..+....++.-+- -|+..++.|++-+++...
T Consensus 178 --------------------------------~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~G 225 (651)
T 3grl_A 178 --------------------------------SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDG 225 (651)
T ss_dssp --------------------------------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGS
T ss_pred --------------------------------chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCcc
Confidence 01279999999999999888754332 344555666555544332
Q ss_pred -hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHH--HHHHHHHHHHHHhccc----Chh-----hHHHHHHHHHH
Q 000941 385 -NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ--EVSKIVKSINRQLREK----SIK-----TKVGAFSVLRE 452 (1215)
Q Consensus 385 -~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~--~~p~i~~~l~~~L~~~----~~~-----~r~~~~~~l~~ 452 (1215)
.|-.+++..+..+++.-.. ....+.+ .+|.+. +.+..+ .|. ....++.+++-
T Consensus 226 givv~DCL~ll~nLLr~N~s------------NQ~~FrEt~~i~~L~----~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl 289 (651)
T 3grl_A 226 GIVVEDCLILLQNLLKNNNS------------NQNFFKEGSYIQRMK----PWFEVGDENSGWSAQKVTNLHLMLQLVRV 289 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHH------------HHHHHHHTTCGGGGG----GGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHH------------HHHHHHHcCCHHHHH----HHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence 5667777778777764100 0001111 122222 222211 111 11123334444
Q ss_pred HHHhCch---hh--hh--hhhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCCCCcchhhh-----------hhhHH
Q 000941 453 LVVVLPD---CL--AD--HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI-----------KALSS 514 (1215)
Q Consensus 453 L~~~~~~---~l--~~--~~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l-----------~~l~p 514 (1215)
|+..... .- +. .-..+++.+.+.+-....+..++.+|+.+++.+++++.. .+.++ +.++.
T Consensus 290 Lv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~--~Q~~fa~~~vp~~~~~p~li~ 367 (651)
T 3grl_A 290 LVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV--NQDYFASVNAPSNPPRPAIVV 367 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH--HHHHHHHCEESSSSCEEHHHH
T ss_pred HhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH--HHHHHhhccCCCCCCcChHHH
Confidence 4332110 00 01 111234555555554444567899999999999987642 22222 22333
Q ss_pred HHHHHhcCC-chHHHHHHHHHHHHHH
Q 000941 515 PVLAAVGER-YYKVTAEALRVCGELV 539 (1215)
Q Consensus 515 ~l~~~l~d~-~~~v~~~al~~l~~l~ 539 (1215)
.+...+.+. .+.++..|+.|+..++
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHH
Confidence 333334443 4578888888887776
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.28 E-value=7.1e-05 Score=71.07 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHH
Q 000941 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1215)
Q Consensus 45 ~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~ 124 (1215)
....+.+...|+|+++.||..|+..|+.+- ... ++.|...+.++++.+|..+..+|..+- .
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~----~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----DEA----FEPLLESLSNEDWRIRGAAAWIIGNFQ----D------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----STT----HHHHHHGGGCSCHHHHHHHHHHHGGGC----S-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----chH----HHHHHHHHcCCCHHHHHHHHHHHHhcC----C-------
Confidence 456677888999999999999998887653 222 366666676777777777777665432 1
Q ss_pred HHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 000941 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1215)
Q Consensus 125 ~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1215)
...+|.|...+.+. ++.||..++.+|+.+ |. +..++.+...++++++.||..|+.+|+.
T Consensus 72 -~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~----~~------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -ERAVEPLIKLLEDD--SGFVRSGAARSLEQI----GG------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHHHHC--CTHHHHHHHHHHHHH----CS------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHh----Cc------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 12355666666654 577888888888765 21 3345556666677777888888877753
No 105
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.17 E-value=9.1e-05 Score=70.32 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=60.1
Q ss_pred hHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHHHhhcc-cchhHHHHHHHHHHHhhccccchhhhhHHHHHH
Q 000941 850 IENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKI 928 (1215)
Q Consensus 850 l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~-~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i 928 (1215)
-.+.+...++++++.+|..|+.+||.+... -+|.+++.++++ +..|...+.+|..+-. +..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------------~~a 74 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------ERA 74 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------HHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------------HHH
Confidence 344456666666666666666666655422 146666666543 2335555555443310 111
Q ss_pred HHHHHhhccCCccchhhHHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhH
Q 000941 929 LNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIK 986 (1215)
Q Consensus 929 ~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk 986 (1215)
++.|.+...+++..+|..++.+||++. ....+|.|.+.++++++.+|..++.++.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 222233333455667777777777765 2345677777777777777777666664
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.95 E-value=0.0081 Score=60.98 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=91.2
Q ss_pred cchHHHHHHhcCCCchhHhhHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHH
Q 000941 848 EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEK 927 (1215)
Q Consensus 848 ~~l~~~ll~~l~~~~e~vR~aAa~aLG~l~~~~~~~~lp~il~~l~~~~~~~~~~l~alke~i~~~~~~~~~~~~~~~~~ 927 (1215)
+++.+++..+.+++..+||..|++.||.+ . .....||.|.+.+..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~~~~L~~ir~~va~--------------------------------- 114 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KDKEILIFMRDEVSK--------------------------------- 114 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TSHHHHHHHHHTGGG---------------------------------
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-CcHHHHHHHHHHhCC---------------------------------
Confidence 56778888888888899999999988876 2 223333333322221
Q ss_pred HHHHHHhhccCCccchhhHHHHHhhhccc-cCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHH
Q 000941 928 ILNLLFNHCESEEEGVRNVVAECLGKIAL-IEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISS 1006 (1215)
Q Consensus 928 i~~~L~~~~~~~~e~~r~~aae~Lg~l~~-~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~ 1006 (1215)
++.=.||..++.++|.++. .+|+..+|.+.+-++++++.+|..++...+-... .+ ........+++-
T Consensus 115 ----------D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~-~~k~dp~~ll~i 182 (240)
T 3l9t_A 115 ----------DNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTN-RP-YFKENPNEAIRR 182 (240)
T ss_dssp ----------CSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGG-ST-TTTTCHHHHHHH
T ss_pred ----------CCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhc-cc-hhhcCHHHHHHH
Confidence 2222355555556666554 5555555666665566666666555555432111 11 111112223333
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhh
Q 000941 1007 FLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPE 1043 (1215)
Q Consensus 1007 ~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~ 1043 (1215)
+-....|++.-||++..-.|+-.+...|+.+..++..
T Consensus 183 L~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 183 IADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 3346668899999999999999999999998887764
No 107
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=96.56 E-value=0.027 Score=60.50 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChhhHH-HHHHHHHHHHHhCchhhhh
Q 000941 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV-GAFSVLRELVVVLPDCLAD 463 (1215)
Q Consensus 385 ~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~~r~-~~~~~l~~L~~~~~~~l~~ 463 (1215)
.||.++++.+.+.++... .+.......+|+++..+..--....+..|. ..++++..++...++.+.+
T Consensus 44 ~vKkeiLkLiet~i~~~~------------d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~ 111 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN------------DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA 111 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS------------CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHcCC------------CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666654321 122234667788887776655554454443 4678889999888888888
Q ss_pred hhhhhhHHHHHh----hc-CCCCcchhHHHHHHHHHHHhccCCCCcc--h-hhhhhhHHHHHHHhcCCchHHHHHHHHHH
Q 000941 464 HIGSLIPGIEKS----LN-DKSSTSNLKIEALTFTRLVLSSHSPPVF--H-PYIKALSSPVLAAVGERYYKVTAEALRVC 535 (1215)
Q Consensus 464 ~~~~lv~~l~~~----l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~--~-~~l~~l~p~l~~~l~d~~~~v~~~al~~l 535 (1215)
.++.++..+..+ ++ |-...++.|..=..+++.+...+-+..+ . +.+..++..++.++++....|...+|.++
T Consensus 112 ~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il 191 (321)
T 1w9c_A 112 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQIL 191 (321)
T ss_dssp GHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 888888777654 22 3345578999999999999887654222 2 36788899999999999999999999999
Q ss_pred HHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHH
Q 000941 536 GELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1215)
Q Consensus 536 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~ 580 (1215)
-++.+.+....+...+-+..|...++..++..+.+++....-+..
T Consensus 192 ~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q 236 (321)
T 1w9c_A 192 FTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMH 236 (321)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHH
Confidence 999888743111112335677888888888888766655554443
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.44 E-value=0.14 Score=53.03 Aligned_cols=188 Identities=14% Similarity=0.074 Sum_probs=116.6
Q ss_pred HHHHHHhccCccc--chhHHHHHHHHHHhhccChhh--H--HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhH
Q 000941 48 SNIVVQQLDDVAG--DVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1215)
Q Consensus 48 ~~~ll~~L~D~~~--~Vq~~A~~~l~~l~~~~~~~~--~--~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~ 121 (1215)
++.+.+.|.++++ ++|..|..++..+...-.+.. + ...++.|...+.+++++.+..|+.||+.+...-+ +..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~--~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN--DNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH--HHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHH
Confidence 5677888998887 899999999998875432211 1 1347888888888888899999999999875322 122
Q ss_pred HHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhc----------------CChH
Q 000941 122 QSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS----------------ANQA 184 (1215)
Q Consensus 122 ~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~----------------~~~~ 184 (1215)
..+.+ --+|.|++.|.+.. +.+++..+..+|-.+...-..-. .-...-++.+...+. ..++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 22222 36788888887532 57899999888887754321100 011122444444321 1245
Q ss_pred HHHHHHHHHHHHHHhhcCHH--HH---HHHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHh
Q 000941 185 SVRKKSVSCIASLASSLSDD--LL---AKATIEVVRNLRS----KGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~--~~---~~l~~~ll~~l~~----~~~~~~~~~~~i~~l~~l~~ 239 (1215)
.++..|..||..++..-.+. .+ ..+++.++..++. .+.++..++-++-++-.++.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 89999999999998643222 11 2345555554443 22223556666666665543
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.40 E-value=0.017 Score=59.88 Aligned_cols=191 Identities=13% Similarity=0.083 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCCCc--chhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh
Q 000941 4 LQMAAILEKITGKDK--DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~--d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
..|..+++.+.+.|+ +++..|+..|.+....+.-....=.....++.|+++|.+++.+||..|+.+|..|+..-.+..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 567889999999998 899888888866543321100001122467999999999999999999999999986422211
Q ss_pred H----HHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhh-------c-------cCCC
Q 000941 82 V----VEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGIT-------L-------KDMN 142 (1215)
Q Consensus 82 ~----~~lv~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~-------~-------~~~~ 142 (1215)
. ..-++.|...+. +++.+.++-++.+|.++-.. + .....+.+.-+|.|.+.+. + ...+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~--~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-D--KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-G--GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-h--hhHHHHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 1 123677777776 45667788888888877532 1 2334445556677765331 1 0114
Q ss_pred hhHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHhhhhcC----C--hHHHHHHHHHHHHHHH
Q 000941 143 TEIRCECLDILCDVLHK---FGNLMSNDHERLLSALLPQLSA----N--QASVRKKSVSCIASLA 198 (1215)
Q Consensus 143 ~~v~~~al~~L~~l~~~---~g~~l~~~~~~ll~~ll~~l~~----~--~~~vrk~a~~~l~~l~ 198 (1215)
.+++..+..+|..+... .-..+.. .+.+++.++..++. . +...++.++-+|-.|.
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 57888888888777542 1122211 12234444444332 2 2356667776666654
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.34 E-value=0.01 Score=60.21 Aligned_cols=164 Identities=14% Similarity=0.091 Sum_probs=91.0
Q ss_pred hhHHHHHHHHhcCCCchhhHHHHHHHhhhhccCCCCCccchHHHHHH-hcCCCchhHhhHHHHHHHhhhh-cCcccchHH
Q 000941 810 SSTVKMLTDILKDDSSTNSHLALLCLGEIGRRKDLSSHEHIENVIIE-SFQSPFEEIKSAASYALGNIAV-GNLSKFLPF 887 (1215)
Q Consensus 810 ~~~l~~~~~~l~~~~~~~~~lal~~lgei~~~~~~~~~~~l~~~ll~-~l~~~~e~vR~aAa~aLG~l~~-~~~~~~lp~ 887 (1215)
...+.-+....+.+....|++|...||.. + ..++.++.+.+ +-++++-.||..++.++|.++. .+++..+|.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~ 143 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPI 143 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44444444333434344599999998887 3 23677887777 5567889999999999999986 677666665
Q ss_pred HHHHhhccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCCCcchHHH
Q 000941 888 ILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPAL 966 (1215)
Q Consensus 888 il~~l~~~~-~~~~~~l~alke~i~~~~~~~~~~~~~~~~~i~~~L~~~~~~~~e~~r~~aae~Lg~l~~~~~~~~lp~l 966 (1215)
+.+=..+++ ..|-+....++-. +.. ..+...-+.+++.+-....++++-||+++|-.|..++..+|+.+...+
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW---~~~---~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIW---TNR---PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSG---GGS---TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHH---hcc---chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 544333322 2232222222110 000 011112244555555555566666666666666666666666555544
Q ss_pred HHhhcCCCcchhHHHhhhhH
Q 000941 967 KVRTTSSAAFTRATVVIAIK 986 (1215)
Q Consensus 967 ~~~l~~~~~~~R~~~i~~lk 986 (1215)
.... ..++..+.+.-.+.|
T Consensus 218 ~~w~-~~~~~~~~i~k~A~k 236 (240)
T 3l9t_A 218 KNWK-LESKEINQVYKLASK 236 (240)
T ss_dssp HTCC-CCSHHHHHHHHHHTT
T ss_pred HHhh-ccCHhHHHHHHHHHh
Confidence 4432 224444554444444
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.09 E-value=0.77 Score=51.57 Aligned_cols=265 Identities=15% Similarity=0.204 Sum_probs=151.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHH
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~ 83 (1215)
..|+.++.-..+.|.++|.-|.-+|-.. ..+ +...+|.+.|.++|....+.-...+-++|-.+.+.-+ .
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~------ck~-~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp----k 133 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQF------ATG-ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA----K 133 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGG------CCT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH----H
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHH------hhh-hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh----H
Confidence 5678888889999999999998888333 333 5689999999999998888778888888888875433 3
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh-
Q 000941 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN- 162 (1215)
Q Consensus 84 ~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~- 162 (1215)
..+..|+..+.++++..|+-...=|+.-+..++...+...+-..++..+...|++ |..+-++.+-+++....-
T Consensus 134 ~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D------VT~~EF~L~m~lL~~lkl~ 207 (507)
T 3u0r_A 134 GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED------VTGEEFVLFMKILSGLKSL 207 (507)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS------CCHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHhcccc
Confidence 4455566666555566666433333333334443212222223333344444433 333444555566644322
Q ss_pred -hhhhhHHHHHHHHhhhhc------CChHHHHHHHHHHHHHHHhhcCH-----HHHHHHHHHHHHHhhcCCC---ChHHH
Q 000941 163 -LMSNDHERLLSALLPQLS------ANQASVRKKSVSCIASLASSLSD-----DLLAKATIEVVRNLRSKGA---KPEMI 227 (1215)
Q Consensus 163 -~l~~~~~~ll~~ll~~l~------~~~~~vrk~a~~~l~~l~~~~~~-----~~~~~l~~~ll~~l~~~~~---~~~~~ 227 (1215)
.. +.+..+++.+..+.. ..+...-.+-+.|+..-..+++. .++.-+...++-.+..-.. ..+.+
T Consensus 208 ~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~k 286 (507)
T 3u0r_A 208 QTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQ 286 (507)
T ss_dssp SSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHH
T ss_pred cCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHH
Confidence 22 345677777777632 23444555667777665555433 3455455555544443211 01245
Q ss_pred HHHHHHHHHHHhhhh--hhhccchhhhHHHHHHhhcccCCC---cHH-----------HHHHHHHHHHHHHHhCh
Q 000941 228 RTNIQMVGALSRAVG--YRFGPHLGDTVPVLIDYCTSASEN---DEE-----------LREYSLQALESFLLRCP 286 (1215)
Q Consensus 228 ~~~i~~l~~l~~~~~--~~~~~~l~~iip~ll~~~~~~~~~---d~e-----------lre~al~~l~~l~~~~~ 286 (1215)
-..+.++..++..++ ..-...++.|...++.++-..-.+ +++ --|..+-+|..+++.+|
T Consensus 287 L~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P 361 (507)
T 3u0r_A 287 LEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLP 361 (507)
T ss_dssp HHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhCh
Confidence 556677777777666 344447788888888776532100 111 22555566666666666
No 112
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.06 E-value=0.55 Score=57.98 Aligned_cols=264 Identities=15% Similarity=0.160 Sum_probs=155.1
Q ss_pred CCCChHHHHHHHHHH----HHhccCcccchhHHHHHHHHHHhhccC---hhhHHHHHHHHHHHhcC--CCcchhhHHH-H
Q 000941 37 FKADADLEVKLSNIV----VQQLDDVAGDVSGLAVKCLAPLVKKVS---EPRVVEMTDKLCIKLLN--GKDQHRDIAS-I 106 (1215)
Q Consensus 37 ~~~~~~~~~~i~~~l----l~~L~D~~~~Vq~~A~~~l~~l~~~~~---~~~~~~lv~~L~~~~~~--~~~~~r~~a~-~ 106 (1215)
.++.++..+++|..+ +.++-.+++.|.+.+..|+..|+---| +-.++.+++.+...+.. -.+.+|-.++ .
T Consensus 326 ~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 326 ICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHH
Confidence 445666666666655 455568999999999999999987666 76778888888888866 3444555443 3
Q ss_pred HHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhh------------------------
Q 000941 107 ALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN------------------------ 162 (1215)
Q Consensus 107 aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~------------------------ 162 (1215)
+|..++--+......+..+-.++..++.|+.-. ++.....++..+..+....+-
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~N--D~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~ 483 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMN--DTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHF 483 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSS--CHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcc--cHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhh
Confidence 443333222211122334444555555666542 455556666666655553211
Q ss_pred ----------------------------hhhhhHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 000941 163 ----------------------------LMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1215)
Q Consensus 163 ----------------------------~l~~~~~~ll~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1215)
.+.......++.++..+.+. +..+-..-..++..+...+++++|+.++..+
T Consensus 484 ~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~ 563 (799)
T 1vsy_4 484 YHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLL 563 (799)
T ss_dssp HHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHH
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 12223345566666666542 2233344566778888899999999888888
Q ss_pred HHHhhcCCCChHHHHHHHHH----HHHHHhhhhhhhccchhhhHHHHHHhhccc-----C--C---CcHHHHHHHHHHHH
Q 000941 214 VRNLRSKGAKPEMIRTNIQM----VGALSRAVGYRFGPHLGDTVPVLIDYCTSA-----S--E---NDEELREYSLQALE 279 (1215)
Q Consensus 214 l~~l~~~~~~~~~~~~~i~~----l~~l~~~~~~~~~~~l~~iip~ll~~~~~~-----~--~---~d~elre~al~~l~ 279 (1215)
.+-+.+.-.. ...+..-+. ++++++..|..|..++|.++..+...+++. . + .|.++ -.-+..+.
T Consensus 564 ~~fv~~n~~~-~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L-~w~l~iL~ 641 (799)
T 1vsy_4 564 NRNFWSNDSF-KEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKL-VLYLTALN 641 (799)
T ss_dssp HHHHHSCSCC-CSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHH-HHHHHHHH
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHH-HHHHHHHH
Confidence 8766553321 111222233 677777777633334444443333222211 0 1 11222 23467788
Q ss_pred HHHHhChhhhcccHHHHHHHHHHHh
Q 000941 280 SFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 280 ~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
.+++..+..+-+|-++++.++...+
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHH
Confidence 8888889889999999998776544
No 113
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.99 E-value=4.8 Score=49.68 Aligned_cols=320 Identities=14% Similarity=0.106 Sum_probs=173.9
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhhhh
Q 000941 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLS---DDLLAKATIEVVRNLRS--KGAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 168 ~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~~~~~~l~~~ll~~l~~--~~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
...+++.++..+-+.+..+...+..|+..|+-..| +-+++.+++.+...|.. -.. +....+++.++..+++..-
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e-~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINS-RHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHHHh
Confidence 45566666666777888899999999999999888 88889999988888876 343 2233456888888887653
Q ss_pred --hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh-hhc---cc------HHHHHHHHHHHhccCCCC
Q 000941 243 --YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DIS---SY------CDEILHLTLEYLSYDPNF 310 (1215)
Q Consensus 243 --~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~-~~~---~~------l~~ii~~~l~~l~~dpn~ 310 (1215)
..+.+|+..++..++..+. ..|..-.-.+++.+..++...|- ++. .+ ..+.++.-..+++.|..
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID---~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 491 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLD---MNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES- 491 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCC---SSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC-
T ss_pred cCcccHHHHHHHHHHHhccCC---cccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc-
Confidence 3566788888888888886 45677777788888888877661 011 11 01122222333432110
Q ss_pred CCCCCCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHH
Q 000941 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDV 390 (1215)
Q Consensus 311 ~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~ 390 (1215)
++.++ |+.+.+ -+..+++ -..+++.+..++++++..+-. ..|+.+-...
T Consensus 492 ------------~~~~~-------~d~~~~--~~~~~~s-------T~~f~~~v~~f~drvf~llen---~~Ee~l~~~l 540 (799)
T 1vsy_4 492 ------------SKTFR-------VDDELL--NNAFKAS-------TTVFQSMLKVYVEKIFQLVDV---DLEDSLVTKI 540 (799)
T ss_dssp ------------SSSCC-------CCTTHH--HHHHHHH-------TSTHHHHHHHHHHHHHHHTTS---CCCTHHHHHH
T ss_pred ------------ccccc-------ccHHHH--HHHHHHH-------HhhHHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 00000 000000 0222222 223344455566666655422 3456655445
Q ss_pred HHHHHHHHHHhcccCCCcCCCCCCChhhHHHHHHHHHHHHHHHHhcccChh-hHHHHHHH----HHHHHHhCchhhhhhh
Q 000941 391 FNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK-TKVGAFSV----LRELVVVLPDCLADHI 465 (1215)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~~p~i~~~l~~~L~~~~~~-~r~~~~~~----l~~L~~~~~~~l~~~~ 465 (1215)
-.++..++.++. .+.+...++.+.+...+.... .......+ ...++...|..+...+
T Consensus 541 ~~~~~~l~~~lS------------------~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~ 602 (799)
T 1vsy_4 541 NQTTMILQESMD------------------DKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELV 602 (799)
T ss_dssp HHHHHHHHHTBC------------------HHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhCC------------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 555666665542 122334444444443332111 11111222 6777777777555556
Q ss_pred hhhhHHHHHhhcCC-----CC-c---c-hhHHHHHHHHHHHhccCCCCcchhhhhhhHHHHHHHhc-CCchHHHHHHHHH
Q 000941 466 GSLIPGIEKSLNDK-----SS-T---S-NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEALRV 534 (1215)
Q Consensus 466 ~~lv~~l~~~l~d~-----~~-~---~-~~~~~al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~-d~~~~v~~~al~~ 534 (1215)
+.++..+..-+.+. .. . . .-..=.+.+++.++...+ ..+-+|-+.++..+...+. .+...+...+-..
T Consensus 603 p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g-~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~l 681 (799)
T 1vsy_4 603 RTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH-ESLLEYSDELITFMKYLYDNVTNPPLDVITSIV 681 (799)
T ss_dssp HHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG-GGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTH
T ss_pred HHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc-HHHHccHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 55555555433322 11 0 0 111224567777777654 4566787888777766653 2333322334444
Q ss_pred HHHHHHhc
Q 000941 535 CGELVRVL 542 (1215)
Q Consensus 535 l~~l~~~~ 542 (1215)
+..++..+
T Consensus 682 l~~lL~sL 689 (799)
T 1vsy_4 682 IHSALATL 689 (799)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.37 E-value=2.4 Score=41.92 Aligned_cols=112 Identities=12% Similarity=0.230 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhccCcccchhhhhH
Q 000941 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD-QEVKECAISCMGLVISTFGDNLGAELPACL 604 (1215)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~-~~Vr~~Ai~~lg~l~~~~~~~l~~~~~~~l 604 (1215)
......+..+..+..+= .-.+.||+.+++|.++..+-..... ..+|+-|...++.++..++.....-.+++.
T Consensus 61 ~~L~~lm~~~~ALl~N~-------~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~ 133 (196)
T 4atg_A 61 EVLKTCIALYFSLIKNK-------HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVL 133 (196)
T ss_dssp HHHHHHHHHHHHHHHCT-------TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHH
Confidence 34444455555555431 3467899999999999988654443 389999999999999999876655566667
Q ss_pred HHHHHhhccc----hhHHHHHHHHHHHHcCCCCCchhHHHHH-HHHHHHHHHH
Q 000941 605 PVLVDRMGNE----ITRLTAVKAFAVIAASPLHIDLTCVLEH-VIAELTAFLR 652 (1215)
Q Consensus 605 ~~L~~~L~~e----~~r~~a~~al~~i~~s~~~~~~~~~l~~-~l~~L~~~L~ 652 (1215)
..+...+-++ .+.-.|+.++..+. ...+.. ++|.+..+.+
T Consensus 134 ~tl~k~l~dp~~~l~t~YGAi~GL~~lG--------~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 134 KTLKGVWMDPNRSEDSQYGALYCLSILS--------KNVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHC--------HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhH--------HHHHHHhhhcCHHHHHH
Confidence 6666666443 46667777777654 222333 3466666554
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.83 E-value=0.3 Score=48.40 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=86.1
Q ss_pred hhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh
Q 000941 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1215)
Q Consensus 164 l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~ 243 (1215)
++-|++.+.+.++. ..|+.|+..|..=... ..+++-++..+.+.+...-.+...-...++...++...-.-
T Consensus 9 lq~yf~~It~a~~~-------~~r~~aL~sL~~D~gL--~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l 79 (196)
T 4atg_A 9 LQLYFDKILSMIKS-------DMKDIAIECLEKESGL--QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV 79 (196)
T ss_dssp HHHHHHHHHHHHTS-------TTHHHHHHHHHHCSSC--TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-------HHHHHHHHHHhcCCCh--hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC
Confidence 34466677666665 3577777777532110 01233333334444443332334555667788888876667
Q ss_pred hhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHh
Q 000941 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 244 ~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
.+.||+.+++|.++.++-...-....+|+.|...+..++..++......-+.++..+.+.+
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l 140 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVW 140 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHH
Confidence 8999999999999998754322333899999999999999987655555677777777766
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.48 E-value=4.5 Score=44.80 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh-hhHHHH
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP-RWLLKQ 422 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~L~~ 422 (1215)
.||++.+..+........+.+ ..+++.|...++|.++.|...++.+.+.+.+..-. |......... ....-+
T Consensus 78 ~vRk~~a~FieEa~~~~~el~----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~---~i~~~~~~~~~~e~~W~ 150 (386)
T 3o2t_A 78 EVRKFVIGFIEEACKRDIELL----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ---WMVKSRVISELQEACWD 150 (386)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH---HHhcCCCcchhHHHHHH
Confidence 789998888887776666554 34555665556777788887777776666543210 0000000000 012233
Q ss_pred HHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC
Q 000941 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1215)
Q Consensus 423 ~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~ 457 (1215)
.+..+-..|...+...+..+|..|+.++..++.+.
T Consensus 151 ~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 151 MVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 34445566667777778889999999999988654
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.80 E-value=0.0051 Score=64.44 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=26.0
Q ss_pred hcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHH
Q 000941 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKC 69 (1215)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~ 69 (1215)
+.|+|+.+|..|...| . ...+..+++|++..||..|++.
T Consensus 59 l~d~~~~VR~~AA~~l-----------~-------~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 59 LADPFWERRAIAVRYS-----------P-------VEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp TTCSSHHHHHHHHTTS-----------C-------GGGGGGGTTCSSHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHhC-----------C-------HHHHHHHccCcCHHHHHHHHHH
Confidence 4888899998887643 1 1124466677777777777754
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.02 E-value=0.027 Score=58.88 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=77.7
Q ss_pred hcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 000941 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIK 92 (1215)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~lv~~L~~~ 92 (1215)
++|+|+.+|++|..-| . . ..+..+++|++.+||..++.-+ +.. .|...
T Consensus 83 ~~D~~~~VR~~aA~~L----~-------~-------~~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L 130 (244)
T 1lrv_A 83 IRDSDEVVRRAVAYRL----P-------R-------EQLSALMFDEDREVRITVADRL-------PLE-------QLEQM 130 (244)
T ss_dssp TTCSSHHHHHHHHTTS----C-------S-------GGGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGG
T ss_pred ccCcCHHHHHHHHHHC----C-------H-------HHHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHH
Confidence 4788888898887532 1 1 2355667777777777776532 111 12222
Q ss_pred hcCCCcchhhHHHHHHHH-HHhccCc---hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhH
Q 000941 93 LLNGKDQHRDIASIALKT-IIAEVTT---SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH 168 (1215)
Q Consensus 93 ~~~~~~~~r~~a~~aL~~-~i~~~~~---~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l~~~~ 168 (1215)
+.+++..+|..++..+.. .+..+-. ......+...+.+.++..+... +++.||..+...+ +.
T Consensus 131 ~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D-~d~~VR~aaa~~l-------~~------ 196 (244)
T 1lrv_A 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQD-PEPEVRRIVASRL-------RG------ 196 (244)
T ss_dssp TTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTC-SSHHHHHHHHHHC-------CG------
T ss_pred HcCCCHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHhC-------CH------
Confidence 334444555544432100 0000000 0111222222333344333222 2677887776542 11
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~ 235 (1215)
+.+...+.++++.||+.++..++ ...+..|+++++ .+|..+.+.+|
T Consensus 197 ----~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L~D~~~--~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 ----DDLLELLHDPDWTVRLAAVEHAS---------------LEALRELDEPDP--EVRLAIAGRLG 242 (244)
T ss_dssp ----GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHCCCCCH--HHHHHHHCCC-
T ss_pred ----HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHccCCCH--HHHHHHHHHhC
Confidence 34556678888888888888764 123344544443 67766655443
No 119
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=93.02 E-value=13 Score=41.16 Aligned_cols=303 Identities=12% Similarity=0.168 Sum_probs=166.8
Q ss_pred chhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc----c----------C-----cccchhH----HHHHHHHHHhh
Q 000941 19 DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----D----------D-----VAGDVSG----LAVKCLAPLVK 75 (1215)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~----------D-----~~~~Vq~----~A~~~l~~l~~ 75 (1215)
+.+..+|.+|...++.....+++.....++.++-.-+ - | |.-|... .+...+-.++.
T Consensus 34 e~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfi~ 113 (403)
T 3fga_B 34 EVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 113 (403)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSCCSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCccccCCccccccccccCcHHHHHHHHHHHHHHh
Confidence 4566889999999887776777777777777765322 1 1 1122232 33334433332
Q ss_pred c--cCh----hhH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc-hhhHHHHHHhHhHHHHhhhhccCCChhHHH
Q 000941 76 K--VSE----PRV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1215)
Q Consensus 76 ~--~~~----~~~-~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~ 147 (1215)
. ..+ +++ ...+-+|+..+.++++..|+.-...|..+...+.. ..+.+.....+ +.+.+-..+ ...-..
T Consensus 114 s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni---f~~fiye~e-~~~GIa 189 (403)
T 3fga_B 114 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI---FYRFIYETE-HHNGIA 189 (403)
T ss_dssp CTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHHHHTTC-CCTTHH
T ss_pred ccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHhcCcc-cCCCHH
Confidence 1 111 111 24677888888888888888777777766654432 11112222222 222222211 122344
Q ss_pred HHHHHHHHHHHHhhhhhhhhHH-HHHHHHhhhhcCChHH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChH
Q 000941 148 ECLDILCDVLHKFGNLMSNDHE-RLLSALLPQLSANQAS-VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPE 225 (1215)
Q Consensus 148 ~al~~L~~l~~~~g~~l~~~~~-~ll~~ll~~l~~~~~~-vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 225 (1215)
+.++++|.++..|..-+.+.|. -+.+++++....+... --..=..|+..+...-+ .+...++..++.---.. ++.
T Consensus 190 eLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~t--ns~ 266 (403)
T 3fga_B 190 ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKT--HSP 266 (403)
T ss_dssp HHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSS--CHH
T ss_pred HHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCC--CcH
Confidence 7899999999988877765554 4567777776665432 12233445544443221 13344555554332222 222
Q ss_pred HHHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH--HHHhChhhhcccHHHHHHHHHH
Q 000941 226 MIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES--FLLRCPRDISSYCDEILHLTLE 302 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~--l~~~~~~~~~~~l~~ii~~~l~ 302 (1215)
..-..+.-++.+....+ ..|.+....+...+..++. ...-.+.|.|+..+.+ ++. -+..+-..++|.+..
T Consensus 267 KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~---S~hfqVAErAL~~wnNe~i~~----li~~n~~~IlPii~p 339 (403)
T 3fga_B 267 KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVS---SPHFQVAERALYYWNNEYIMS----LISDNAAKILPIMFP 339 (403)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHT---CSCHHHHHHHHGGGGCHHHHH----HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHhccHHHHH----HHHHhHHHHHHHHHH
Confidence 22334566666776554 5666666777777777766 3567788877755521 221 123334455555544
Q ss_pred HhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH--HHHHHHHHHHHHHHhhCchhhHH
Q 000941 303 YLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLSK 366 (1215)
Q Consensus 303 ~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw--kvR~~Aa~~L~~li~~~~~~l~~ 366 (1215)
.+...- ...| .||..+..++..+.+..|+.+..
T Consensus 340 ~L~~~~-------------------------------~~HWn~~v~~l~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 340 SLYRNS-------------------------------KTHWNKTIHGLIYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp HHHHTT-------------------------------SCCSCHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHH-------------------------------HHccCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 431000 0113 69999999999998888765543
No 120
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.78 E-value=11 Score=39.39 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHH
Q 000941 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1215)
Q Consensus 5 ~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~ 84 (1215)
-+..++..-+....+.|--.|...+..+-. .|+...+++++.++..-.|++.+||+..+.-|+....+ .++....
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~----~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~ 90 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLG----SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH 90 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTT----TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHc----cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345566665542336766666666554332 35678899999999988999999999999999887744 4567889
Q ss_pred HHHHHHHHhcCCCcchhh--------HHHHHHHHHHhccCchhhHHHHHHhH---hHHHHhhhhccCCChhHHHHHHHHH
Q 000941 85 MTDKLCIKLLNGKDQHRD--------IASIALKTIIAEVTTSSLAQSIHTSL---TPQLTKGITLKDMNTEIRCECLDIL 153 (1215)
Q Consensus 85 lv~~L~~~~~~~~~~~r~--------~a~~aL~~~i~~~~~~~~~~~~~~~l---~p~L~~~l~~~~~~~~v~~~al~~L 153 (1215)
.++.|...+.++++.+-. ++-.+|+.++.+-+.+......|..+ -..++..+... +..+|..++..+
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~ 168 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFL 168 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHH
Confidence 999999888765543221 33345556664332211223333332 24455544443 578999998888
Q ss_pred HHHHHHh
Q 000941 154 CDVLHKF 160 (1215)
Q Consensus 154 ~~l~~~~ 160 (1215)
..++-.+
T Consensus 169 e~vIl~q 175 (257)
T 3gs3_A 169 EGVVVLQ 175 (257)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7766443
No 121
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.89 E-value=20 Score=40.50 Aligned_cols=303 Identities=12% Similarity=0.174 Sum_probs=167.9
Q ss_pred cchhhhhHHHHHHHhccccCCCChHHHHHHHHHHH----HhccC----------c-----ccchh----HHHHHHHHHHh
Q 000941 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVV----QQLDD----------V-----AGDVS----GLAVKCLAPLV 74 (1215)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll----~~L~D----------~-----~~~Vq----~~A~~~l~~l~ 74 (1215)
++.+..+|.+|...++.....+++.....++.++- +.+-. | .-+.. ..+...+-.++
T Consensus 66 Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv 145 (449)
T 2npp_B 66 KEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 145 (449)
T ss_dssp CCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCCCCCCCSSCCSSSSCGGGCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccccCCCccccccccccchHHHHHHHHHHHHH
Confidence 45678899999999987665566554455555543 33321 1 11222 33444444444
Q ss_pred hc--cC----hhhH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc-hhhHHHHHHhHhHHHHhhhhccCCChhHH
Q 000941 75 KK--VS----EPRV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT-SSLAQSIHTSLTPQLTKGITLKDMNTEIR 146 (1215)
Q Consensus 75 ~~--~~----~~~~-~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~-~~~~~~~~~~l~p~L~~~l~~~~~~~~v~ 146 (1215)
.. +. .+++ ..++.+|+..+.++++..|+.-...|..+...+.. ....++.+..+.-+.+. ..+ ...--
T Consensus 146 ~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~---e~e-~~nGI 221 (449)
T 2npp_B 146 ESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY---ETE-HHNGI 221 (449)
T ss_dssp TSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHH---TCS-CCSCH
T ss_pred HccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccC-CCCCH
Confidence 21 21 1222 35788888888888888898877778777766543 12222222223233322 221 22334
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHH-HHHHHHhhhhcCChHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 000941 147 CECLDILCDVLHKFGNLMSNDHE-RLLSALLPQLSANQASV-RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1215)
Q Consensus 147 ~~al~~L~~l~~~~g~~l~~~~~-~ll~~ll~~l~~~~~~v-rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~ 224 (1215)
.+.++++|.++..|.--+.+.|. -+..++++....+.... -..=..|+..+...-+ .+...++..++.---.. ++
T Consensus 222 aeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~t--ns 298 (449)
T 2npp_B 222 AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKT--HS 298 (449)
T ss_dssp HHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSS--CH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc-HhHHHHHHHHHHhCCCC--Cc
Confidence 57889999999888766655544 45677777776554322 1222345544443221 13334555554332222 22
Q ss_pred HHHHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHH--HHHhChhhhcccHHHHHHHHH
Q 000941 225 EMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES--FLLRCPRDISSYCDEILHLTL 301 (1215)
Q Consensus 225 ~~~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~--l~~~~~~~~~~~l~~ii~~~l 301 (1215)
...-..+.-+..+....+ ..|.+....+...+-.++. ...-.+.|.|+..+.+ ++. -+..+-..++|.+.
T Consensus 299 ~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~---S~hfqVAErAL~~w~N~~i~~----li~~n~~~IlPii~ 371 (449)
T 2npp_B 299 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVS---SPHFQVAERALYYWNNEYIMS----LISDNAAKILPIMF 371 (449)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHT---CSCHHHHHHHHGGGGCHHHHH----HHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHCCHHHHH----HHHhchhhhHHhhH
Confidence 222234556666666543 5677677777777777776 3567788877755522 221 23334455666666
Q ss_pred HHhccCCCCCCCCCCCcccccccccchhhhcCCCCCCCCccH--HHHHHHHHHHHHHHhhCchhhH
Q 000941 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLS 365 (1215)
Q Consensus 302 ~~l~~dpn~~~~~d~d~~~~~~~~~~d~~~~~~~~dd~d~sw--kvR~~Aa~~L~~li~~~~~~l~ 365 (1215)
..+...- ...| .||..|..++..+.+..|+.+.
T Consensus 372 p~L~~~s-------------------------------~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 372 PSLYRNS-------------------------------KTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHTSCT-------------------------------TCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH-------------------------------HHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 5542100 0113 5899999999988887776444
No 122
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.44 E-value=15 Score=38.22 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCCh-hhHHH
Q 000941 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP-RWLLK 421 (1215)
Q Consensus 343 wkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~L~ 421 (1215)
-.||+..+.-+.......++... .+++.|...++|..+.|...++++.+.+.+..-. |......... ....-
T Consensus 67 ~~vrk~~~~Fi~e~~~~k~~l~~----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~---~i~~~~~~~~~~~~~W 139 (257)
T 3gs3_A 67 MEVRKQVVAFVEQVCKVKVELLP----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ---YLCSLMEPGDSAEQAW 139 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH---HHTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH---HHhcCCCCcchHHHHH
Confidence 37999999999888777765444 5566665566888888888888877776654311 1000000000 11223
Q ss_pred HHHHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhC
Q 000941 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1215)
Q Consensus 422 ~~~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~ 457 (1215)
+.+..+=..+...+.+.+..+|..|+.++..++...
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 344455566777777778889999999999988643
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.42 E-value=22 Score=45.80 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=102.6
Q ss_pred HHHHHHhhhhcCC----hHHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000941 170 RLLSALLPQLSAN----QASVRKKSVSCIASLASS-------LSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1215)
Q Consensus 170 ~ll~~ll~~l~~~----~~~vrk~a~~~l~~l~~~-------~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~ 238 (1215)
.+++.+...+.++ ++.+|+.++-++|.++.. ++.+.+..+...+.+.+.+.+ .+.+..++.++|.+.
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~--~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK--EEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhhccC
Confidence 3445555555543 457999999999988852 234456667777777776543 356678899999886
Q ss_pred hhhhhhhccchhhhHHHHHHhhcc----cCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHhccCCCCCCCC
Q 000941 239 RAVGYRFGPHLGDTVPVLIDYCTS----ASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM 314 (1215)
Q Consensus 239 ~~~~~~~~~~l~~iip~ll~~~~~----~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l~~dpn~~~~~ 314 (1215)
. +..++.+..++.. .......+|-.|+++|..+....|+.+ -+.+++... |+.
T Consensus 469 ~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v-------~~il~~i~~-n~~----- 525 (1056)
T 1lsh_A 469 Q----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-------QEIVLPIFL-NVA----- 525 (1056)
T ss_dssp C----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-------HHHHHHHHH-CTT-----
T ss_pred C----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH-------HHHHHHHhc-CCC-----
Confidence 5 2234444444321 112235688889999988887766433 344444432 111
Q ss_pred CCCcccccccccchhhhcCCCCCCCCccHHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 000941 315 EEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTF 394 (1215)
Q Consensus 315 d~d~~~~~~~~~~d~~~~~~~~dd~d~swkvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l 394 (1215)
..-.||-+|... ++.+.|.. ..+..+...+ ..|++..|+.-+...+
T Consensus 526 --------------------------e~~EvRiaA~~~---Lm~t~P~~--~~l~~ia~~l---~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 526 --------------------------IKSELRIRSCIV---FFESKPSV--ALVSMVAVRL---RREPNLQVASFVYSQM 571 (1056)
T ss_dssp --------------------------SCHHHHHHHHHH---HHHTCCCH--HHHHHHHHHH---TTCSCHHHHHHHHHHH
T ss_pred --------------------------CChHHHHHHHHH---HHHHCcCH--HHHHHHHHHH---hhCchHHHHHHHHHHH
Confidence 012688888655 46677742 2233333333 2677788887776666
Q ss_pred HHHHHH
Q 000941 395 IELVRQ 400 (1215)
Q Consensus 395 ~~l~~~ 400 (1215)
..+.+.
T Consensus 572 ~sla~s 577 (1056)
T 1lsh_A 572 RSLSRS 577 (1056)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 666543
No 124
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.41 E-value=39 Score=37.34 Aligned_cols=274 Identities=10% Similarity=0.116 Sum_probs=133.1
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhhHHHH
Q 000941 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1215)
Q Consensus 6 l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~~~~l 85 (1215)
+..+|..-.....+.+--.|..++..+-. .++...+.+++.++..-.|++.+||+..+..|+....+ ..+.....
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~----~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~~ 101 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIIN----KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLKL 101 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHT----TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33444443221225566666666554322 25567789999999999999999999999999888764 45567888
Q ss_pred HHHHHHHhcCCCcchhh--------HHHHHHHHHHhccCchhhHHHHHHh---HhHHHHhhhhccCCChhHHHHHHHHHH
Q 000941 86 TDKLCIKLLNGKDQHRD--------IASIALKTIIAEVTTSSLAQSIHTS---LTPQLTKGITLKDMNTEIRCECLDILC 154 (1215)
Q Consensus 86 v~~L~~~~~~~~~~~r~--------~a~~aL~~~i~~~~~~~~~~~~~~~---l~p~L~~~l~~~~~~~~v~~~al~~L~ 154 (1215)
++.|...+.+.++.+-. ++-.+++.++.+-+.+......|.. +-..++..+... +..||..++..+.
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~GVrl~aiKFle 179 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--NDGIRTHAIKFVE 179 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--CcchHHHHHHHHH
Confidence 99998888654433211 2223333333322111111122221 112333333222 3555655555554
Q ss_pred HHHHHhhhhhh-h---hHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000941 155 DVLHKFGNLMS-N---DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTN 230 (1215)
Q Consensus 155 ~l~~~~g~~l~-~---~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~ 230 (1215)
.++-.+..... + .... .+.-+..+....+.++...+.. .-..++..++..+..+...+...-+.
T Consensus 180 ~VIl~qS~~~~d~~~p~~~~-~d~SL~~VP~nHp~L~~~~Le~-----------EA~~lLd~LL~~l~~~~iss~~l~a~ 247 (386)
T 3o2t_A 180 GLIVTLSPRMADSEIPRRQE-HDISLDRIPRDHPYIQYNVLWE-----------EGKAALEQLLKFMVHPAISSINLTTA 247 (386)
T ss_dssp HHHHHTSCCCTTCCCCGGGT-TSCCGGGSCTTCSSSCHHHHHH-----------HHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred HHHHHhCCCCCCcccccccC-CCCCHhhCCCCCCcCCHHHHHH-----------HHHHHHHHHHHHHcccccccHHHHHH
Confidence 44433221100 0 0000 0000000000011011000000 01235556666666554433344456
Q ss_pred HHHHHHHHhhhhhhhccchhhhHHHHHHhhccc--CC---CcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHh
Q 000941 231 IQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--SE---NDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 231 i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~--~~---~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
+.+++.|++.-| .|.+.|++.+...-.+. .. .-..++...-..|-.+.+ .|. -.||-++|...+....
T Consensus 248 lnsLa~Iak~RP----~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK-~p~-s~~~~~~I~~~L~~Lg 320 (386)
T 3o2t_A 248 LGSLANIARQRP----MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLK-HPA-SLEFQAQITTLLVDLG 320 (386)
T ss_dssp HHHHHHHHHHSG----GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHT-SGG-GGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcH----HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHc-CCC-chhhHHHHHHHHHHHc
Confidence 777777777554 34667777776543211 00 011244444445555555 342 2478888888776643
No 125
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=86.91 E-value=16 Score=39.13 Aligned_cols=164 Identities=13% Similarity=0.235 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHhh----hcccchhHH-HHHHHHHHHHHHHhcccCCCcCCCCCCChhh
Q 000941 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDR----FKEREENVK-MDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~~~l~~~~~~i~p~Li~~----~~d~e~~Vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 418 (1215)
.||+.-.+++.+.+...++ .+.+.+.++|.|+.. .+...+..| .+++.++.++++..+.
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~--------------- 107 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--------------- 107 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG---------------
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH---------------
Confidence 4567777888888876654 233455555655432 122223344 3567788888888752
Q ss_pred HHHHHHHHHHHHHH----HHhcc---cChhhHHHHHHHHHHHHHhCchhhh----hhhhhhhHHHHHhhcCCCCcchhHH
Q 000941 419 LLKQEVSKIVKSIN----RQLRE---KSIKTKVGAFSVLRELVVVLPDCLA----DHIGSLIPGIEKSLNDKSSTSNLKI 487 (1215)
Q Consensus 419 ~L~~~~p~i~~~l~----~~L~~---~~~~~r~~~~~~l~~L~~~~~~~l~----~~~~~lv~~l~~~l~d~~~~~~~~~ 487 (1215)
.+.+.+|.|+..+. ...+. ..|..|..=+.+|..+.......+- +++..++..+.-++++.. .++..
T Consensus 108 ~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~--r~V~e 185 (321)
T 1w9c_A 108 HITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM--RNVAD 185 (321)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSS--HHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCC--chHHH
Confidence 33455666666554 44443 3577899999999999987655432 467788888887777654 67777
Q ss_pred HHHHHHHHHhccCC--CCc----chhhhhhhHHHHHHHhcCCch
Q 000941 488 EALTFTRLVLSSHS--PPV----FHPYIKALSSPVLAAVGERYY 525 (1215)
Q Consensus 488 ~al~~l~~l~~~~~--~~~----~~~~l~~l~p~l~~~l~d~~~ 525 (1215)
.+|..+..+++... ++. ++.|.-.++..+...+-|+.+
T Consensus 186 ~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 186 TGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 78877777765432 111 123455566666666666543
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.33 E-value=50 Score=36.60 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=64.2
Q ss_pred HHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHH--HHHhccCCCcCCCCCChhcHHHHHHHHHHH
Q 000941 490 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE--LVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1215)
Q Consensus 490 l~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 567 (1215)
+.-+..+++..++..|.+...+++..+..++..++++|+..|+....+ ++.. +..+...++|.++..
T Consensus 272 L~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~l-----------i~~n~~~IlPii~p~ 340 (403)
T 3fga_B 272 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL-----------ISDNAAKILPIMFPS 340 (403)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH-----------HHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHH-----------HHHhHHHHHHHHHHH
Confidence 455666777777778888888999999999999999999999876532 1211 223445566666665
Q ss_pred hhc---cCCCHHHHHHHHHHHHHHHHhc
Q 000941 568 LTN---QDQDQEVKECAISCMGLVISTF 592 (1215)
Q Consensus 568 l~~---~d~~~~Vr~~Ai~~lg~l~~~~ 592 (1215)
+.. +.=++.||..|..++..+...-
T Consensus 341 L~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 341 LYRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 532 2225899999999988766543
No 127
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=83.74 E-value=6.4 Score=42.31 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccCh----
Q 000941 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---- 79 (1215)
Q Consensus 4 ~~l~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~---- 79 (1215)
.-...+++|+.+.+.+.+-.|+..|.+.++++..=..+=..+.=+..|++...+.++..|+.+.++++.+...+.-
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 3456788999888888888999999988875321111111122345677777888999999999999999865211
Q ss_pred hhHHHHHHHHHHHhcCCCcchhhHHHHHHH---HHHhccCch-hhHHHHHH--------hHhHHHHhhhhc-cCCChhHH
Q 000941 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALK---TIIAEVTTS-SLAQSIHT--------SLTPQLTKGITL-KDMNTEIR 146 (1215)
Q Consensus 80 ~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~---~~i~~~~~~-~~~~~~~~--------~l~p~L~~~l~~-~~~~~~v~ 146 (1215)
-..+..+.++...+.+ ..+.+.-.||+ .+++..+.. .+...-++ ..+..|+..|+. ...+.+++
T Consensus 198 vs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 198 VAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred hCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 0125678888888863 33566555554 344433220 11111111 124456666652 11357777
Q ss_pred HHHHHHHHHHHHHhh
Q 000941 147 CECLDILCDVLHKFG 161 (1215)
Q Consensus 147 ~~al~~L~~l~~~~g 161 (1215)
..++..++.++...+
T Consensus 275 ~~amtLIN~lL~~ap 289 (339)
T 3dad_A 275 VYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCC
Confidence 777777776665543
No 128
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=82.57 E-value=85 Score=37.11 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhhhhh-hhHHHHHHHHhhh-h-cCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChH
Q 000941 149 CLDILCDVLHKFGNLMS-NDHERLLSALLPQ-L-SANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPE 225 (1215)
Q Consensus 149 al~~L~~l~~~~g~~l~-~~~~~ll~~ll~~-l-~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 225 (1215)
-+..+-..+...-..|. ..+..++..++.. - -.-+..+.+.=+.-|+.|+..-+ .++..++..+++.+..+. +
T Consensus 114 ~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~-~yl~~vl~mLV~~F~~~~---~ 189 (649)
T 3tj1_A 114 NLNILLDILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP-KWWQDVSMILVSCFILPI---K 189 (649)
T ss_dssp HHHHHHHHHHHTGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHGGGSCH---H
T ss_pred HHHHHHHHHHhhhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhccCCC---c
Confidence 33334344444445553 5677888888765 1 11233566666777778876654 577888888888886532 1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHH
Q 000941 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1215)
Q Consensus 226 ~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1215)
.....-.++..|.+..|.. ...+.|.+.+.+-... +....-..-..-+-.+..+||.-=...+.-|+..+++
T Consensus 190 ~~~~~H~~L~~Il~lvP~s----~~~L~~iL~~~FP~~~-~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 190 QTVCHHDMLKYFLRMIPSS----MGFIDTYLAKFFPNKN-DTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCCTT-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCC----HHHHHHHHHHhCCCCC-CchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 1222345667777765533 1334444444443321 2222222233444456678884333344444444433
No 129
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=80.78 E-value=73 Score=35.15 Aligned_cols=251 Identities=12% Similarity=0.147 Sum_probs=140.0
Q ss_pred chhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhc----cC----------c-----ccchhH----HHHHHHHHHhh
Q 000941 19 DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----DD----------V-----AGDVSG----LAVKCLAPLVK 75 (1215)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~D----------~-----~~~Vq~----~A~~~l~~l~~ 75 (1215)
+.+..+|.+|...++.....++++....++.++-.-+ -. + .-+..+ .+.+.+-.++.
T Consensus 79 e~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~ 158 (392)
T 2jak_A 79 EVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLE 158 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC---------------CCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHHH
Confidence 4566799999999988777777777777777765222 11 1 112222 33333333332
Q ss_pred c--cChh----hH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCchhhHHHHHHhHhHHHHhhhhccCCChhHHHH
Q 000941 76 K--VSEP----RV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1215)
Q Consensus 76 ~--~~~~----~~-~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~ 148 (1215)
. ..+. ++ ...+.+|+..+.++++..|+.-...|..+...+.. ...-+.+.+-..+.+.+-..+ ...-..+
T Consensus 159 s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~--~R~~Irk~i~nif~~fiye~e-~~~GIae 235 (392)
T 2jak_A 159 SPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG--LRAYIRKQINNIFYRFIYETE-HHNGIAE 235 (392)
T ss_dssp CTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHTSSC-CCSCHHH
T ss_pred ccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhccC-CCCCHHH
Confidence 1 2211 11 35677888888888888888777777766665442 111122222223333332222 2334457
Q ss_pred HHHHHHHHHHHhhhhhhhhHHH-HHHHHhhhhcCChHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHH
Q 000941 149 CLDILCDVLHKFGNLMSNDHER-LLSALLPQLSANQASV-RKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEM 226 (1215)
Q Consensus 149 al~~L~~l~~~~g~~l~~~~~~-ll~~ll~~l~~~~~~v-rk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 226 (1215)
.+++++.++..|..-+.+.+.. +.+++++....+.... -..=..|+..+...- ..+...++..++.-.-..+. ..
T Consensus 236 LLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~tns--~K 312 (392)
T 2jak_A 236 LLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPKTHS--PK 312 (392)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHSSCSSCC--TT
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCc--hH
Confidence 8999999999988667655555 5777788776554322 122234444444321 11334455555543322222 22
Q ss_pred HHHHHHHHHHHHhhhh-hhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHH
Q 000941 227 IRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1215)
Q Consensus 227 ~~~~i~~l~~l~~~~~-~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l 278 (1215)
.-..+.-+..+....+ ..|.+....+...+-.++. ...-.+.|.|+..|
T Consensus 313 evlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~---S~hfqVAErAL~~w 362 (392)
T 2jak_A 313 EVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVS---SPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHh
Confidence 2244556666666554 5667777777777777776 35667877776554
No 130
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=79.17 E-value=90 Score=35.21 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHHHH--HHHhccCCCcCCCCCChhcHHHHHHHHHH
Q 000941 489 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE--LVRVLRPSVEGLGFDFKPYVQPIYNAIMS 566 (1215)
Q Consensus 489 al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 566 (1215)
-+.-+..+++..++..|.....+++..+..+++.++++|+..|+....+ ++.. +..+...++|.++.
T Consensus 304 FL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l-----------i~~n~~~IlPii~p 372 (449)
T 2npp_B 304 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL-----------ISDNAAKILPIMFP 372 (449)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH-----------HHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH-----------HHhchhhhHHhhHH
Confidence 3455666777777778888888999999999999999999999876532 1211 23345567777777
Q ss_pred Hhhcc-CC--CHHHHHHHHHHHHHHH
Q 000941 567 RLTNQ-DQ--DQEVKECAISCMGLVI 589 (1215)
Q Consensus 567 ~l~~~-d~--~~~Vr~~Ai~~lg~l~ 589 (1215)
.+... .. +..||..|..++..+.
T Consensus 373 ~L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 373 SLYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HHTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 66322 22 4789999988887554
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.27 E-value=18 Score=46.59 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcC----CCcchhhHHHHHHHHHHhcc----Cc--hhhHHHHHHhHhHHHHhhhhccCCChhHHHHHHHHH
Q 000941 84 EMTDKLCIKLLN----GKDQHRDIASIALKTIIAEV----TT--SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1215)
Q Consensus 84 ~lv~~L~~~~~~----~~~~~r~~a~~aL~~~i~~~----~~--~~~~~~~~~~l~p~L~~~l~~~~~~~~v~~~al~~L 153 (1215)
+++..+...+.+ .++.+|+.+.+++.+++... +. .++. +.+...+.+++... +.+-+.-++.+|
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v----~~i~~~l~~~~~~~--~~~~~~~~LkaL 464 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL----QPLHDLLSQSSDRA--KEEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT----HHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH----HHHHHHHHHHHhcC--ChHHHHHHHHHh
Confidence 445555544433 34557788888888766421 11 1222 33333444555543 456667777777
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhhhhcC-------ChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHH
Q 000941 154 CDVLHKFGNLMSNDHERLLSALLPQLSA-------NQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEM 226 (1215)
Q Consensus 154 ~~l~~~~g~~l~~~~~~ll~~ll~~l~~-------~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 226 (1215)
|.+ |- +..++.+.+++.. ....||..|+.||..++...+.. +-+.+++...+...+.++
T Consensus 465 GN~----g~------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~----v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 465 GNA----GQ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK----VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp HHH----TC------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH----HHHHHHHHHHCTTSCHHH
T ss_pred hcc----CC------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH----HHHHHHHHhcCCCCChHH
Confidence 765 22 3344555555531 12368999999999998654443 333445555555555677
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 227 IRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 227 ~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
|-. ++-.+.++.|.. .++..+...+.. |.+.+++.+....+.++++..
T Consensus 531 Ria---A~~~Lm~t~P~~------~~l~~ia~~l~~--E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIR---SCIVFFESKPSV------ALVSMVAVRLRR--EPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHH---HHHHHHHTCCCH------HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCC
T ss_pred HHH---HHHHHHHHCcCH------HHHHHHHHHHhh--CchHHHHHHHHHHHHHHHhcC
Confidence 755 444455655422 123334444443 578899999999999998875
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=73.29 E-value=1.3e+02 Score=34.11 Aligned_cols=261 Identities=9% Similarity=0.049 Sum_probs=128.8
Q ss_pred HHHHhcCC-CcchhhhhHHHHHHHhccccCC-----CChHHHHHHHHHHHHhccC----------c---ccchhHHHHHH
Q 000941 9 ILEKITGK-DKDFRYMATSDLLNELNKESFK-----ADADLEVKLSNIVVQQLDD----------V---AGDVSGLAVKC 69 (1215)
Q Consensus 9 ll~~~~~~-d~d~R~mAl~dL~~~l~~~~~~-----~~~~~~~~i~~~ll~~L~D----------~---~~~Vq~~A~~~ 69 (1215)
++..+++. +.|.++.|.+-|...+..+.++ .+......++..+-+.+.. + +-..|..++-|
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 44444443 4577888888887766553221 1222222233222233211 1 23457777777
Q ss_pred HHHHhh------ccChhhHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHhccCc--hhhHHH-HH-HhHhHHHHhhhhc
Q 000941 70 LAPLVK------KVSEPRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTT--SSLAQS-IH-TSLTPQLTKGITL 138 (1215)
Q Consensus 70 l~~l~~------~~~~~~~~~lv~~L~~~~~-~~~~~~r~~a~~aL~~~i~~~~~--~~~~~~-~~-~~l~p~L~~~l~~ 138 (1215)
+=.|.= .+...++ ..+..|...+. +.++.+-.++..+|+++++..+. ...... +. ..+ +++++.|+.
T Consensus 252 iWlLSF~~~~~~~l~~~~i-~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYL-SDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHcCHHHHHHHHhcch-HHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 755431 1111221 22344544443 45677778888889998875532 112221 11 233 556666665
Q ss_pred cC-CChhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChH-----HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 000941 139 KD-MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA-----SVRKKSVSCIASLASSLSDDLLAKATIE 212 (1215)
Q Consensus 139 ~~-~~~~v~~~al~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~-----~vrk~a~~~l~~l~~~~~~~~~~~l~~~ 212 (1215)
.+ .+++. .+.++.|.+.++..-..++.+-...-+.....|.-+.+ -=|+.|. . +.++-| .++..
T Consensus 330 rk~~Dedl-~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~----k----f~e~~~-~llk~ 399 (480)
T 1ho8_A 330 RKYSDEEL-RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNID----E----FKKDNY-KIFRQ 399 (480)
T ss_dssp SCCSSHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSG----G----GSSGGG-HHHHH
T ss_pred CCCCcHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHH----H----HHhcch-HHHHH
Confidence 33 23343 34456666666665556655544444444455543211 1222221 1 111111 23444
Q ss_pred HHHHhhcC--------CCChHHHHHHHHHHHHHHhhhhhh--hccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHH
Q 000941 213 VVRNLRSK--------GAKPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1215)
Q Consensus 213 ll~~l~~~--------~~~~~~~~~~i~~l~~l~~~~~~~--~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~ 282 (1215)
+++.+.++ +.++.+...|+.=+|.+++..|.. +..-+. .=..+++.+. .+|+++|..|+.|.+.++
T Consensus 400 L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg-~K~~VM~Lm~---h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 400 LIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG-GKADIMELLN---HSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS-HHHHHHHHTS---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC-cHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence 44444421 111233445667778888877632 111111 1233445555 579999999999999887
Q ss_pred HhC
Q 000941 283 LRC 285 (1215)
Q Consensus 283 ~~~ 285 (1215)
.+.
T Consensus 476 ~~~ 478 (480)
T 1ho8_A 476 GYT 478 (480)
T ss_dssp HHS
T ss_pred Hhc
Confidence 654
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=64.73 E-value=1.5e+02 Score=31.69 Aligned_cols=184 Identities=12% Similarity=0.127 Sum_probs=115.6
Q ss_pred HHHHHHHhccCcccchhHHHHHHHHHHhhc-cCh-----hhH---HHHHHHHHHHhcCCCcchhhHHHHHHHHHHhccCc
Q 000941 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKK-VSE-----PRV---VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT 117 (1215)
Q Consensus 47 i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~-~~~-----~~~---~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~~~~ 117 (1215)
++..++..|..=.-|.|+-+..+++.+.++ .+. +++ ++++..|+.+..++ +.--.+..-|+.++..-
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~--diAl~~G~mLRecir~e-- 154 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIMLRECIRHE-- 154 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHHHHHHHTSH--
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc--hhHhHHHHHHHHHHHhH--
Confidence 555667777777889999999999988864 221 111 35666666655322 22234445566666421
Q ss_pred hhhHHHHHH-hHhHHHHhhhhccCCChhHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHhhhhcCChHHHHHHHHH
Q 000941 118 SSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM----SNDHERLLSALLPQLSANQASVRKKSVS 192 (1215)
Q Consensus 118 ~~~~~~~~~-~l~p~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g~~l----~~~~~~ll~~ll~~l~~~~~~vrk~a~~ 192 (1215)
.+..-++. ..+-.+++.++.. +-++..+|+.++-+++.+..... ...++.....+-..+.+++-.+|+.++.
T Consensus 155 -~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 -PLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp -HHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred -HHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 11111111 2223566666654 69999999999999999866544 3456777777777888888899999999
Q ss_pred HHHHHHhhcCHH-H----H--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 000941 193 CIASLASSLSDD-L----L--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR 239 (1215)
Q Consensus 193 ~l~~l~~~~~~~-~----~--~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~ 239 (1215)
.||.+.---... . + ..-+..++..|++... .++-.+++.+-.++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk--~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR--NIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchh--chhhhhhhheeeeee
Confidence 999877432211 1 1 2234455666666542 456667777766553
No 134
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=63.25 E-value=1.8e+02 Score=32.00 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCCCCcchhhhhhhHHHHHHHhcCCchHHHHHHHHHH
Q 000941 489 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVC 535 (1215)
Q Consensus 489 al~~l~~l~~~~~~~~~~~~l~~l~p~l~~~l~d~~~~v~~~al~~l 535 (1215)
-+.-+..+++..++..+.....+++..+..++..++++|+..|+...
T Consensus 316 FL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 316 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 34556677777777788888889999999999999999999998654
No 135
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=63.01 E-value=12 Score=38.22 Aligned_cols=90 Identities=8% Similarity=0.073 Sum_probs=65.7
Q ss_pred HHHHHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHH
Q 000941 946 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1025 (1215)
Q Consensus 946 ~aae~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~ 1025 (1215)
..+.++|.++...|+.+.+.+.+...+++..+|.+++.+.-...... ....++.-+-..+.|++.-||++..-+
T Consensus 109 ~~a~~~~~~~~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~------~~~~~~~i~~~~~~d~~~yV~kavgW~ 182 (220)
T 2b6c_A 109 AWRKFFGSWVALHLTELPTIFALFYGAENFWNRRVALNLQLMLKEKT------NQDLLKKAIIYDRTTEEFFIQKAIGWS 182 (220)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGC------CHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33367888887788888898999988888888866665442222221 122333333337889999999999999
Q ss_pred HHHHHhcCcccccchh
Q 000941 1026 LSTFAHNKPNLIKGLL 1041 (1215)
Q Consensus 1026 L~~~~~~~p~~i~~~l 1041 (1215)
|..+....|+.+.+++
T Consensus 183 Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 183 LRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTTCHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHH
Confidence 9999999999988877
No 136
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=61.41 E-value=1.8e+02 Score=31.29 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=66.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--HHHHH---------
Q 000941 142 NTEIRCECLDILCDVLHKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--LLAKA--------- 209 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l-~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~~~~l--------- 209 (1215)
+.+.+..++.+|.+++.+.-..- .-.++..++.+...+.+....|-|+|+..|-.++.+.+.. ++..-
T Consensus 173 ~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~ 252 (339)
T 3dad_A 173 DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTG 252 (339)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccC
Confidence 57788899999988877522210 0126778888888888777899999999999999887433 22222
Q ss_pred ---HHHHHHHhhcC-CCChHHHHHHHHHHHHHHhhhh
Q 000941 210 ---TIEVVRNLRSK-GAKPEMIRTNIQMVGALSRAVG 242 (1215)
Q Consensus 210 ---~~~ll~~l~~~-~~~~~~~~~~i~~l~~l~~~~~ 242 (1215)
.+.++..|++. ..+.+....++.++..+...+|
T Consensus 253 ~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 253 APPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp CCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 23455555421 1234566666777777766655
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.02 E-value=69 Score=30.85 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=74.5
Q ss_pred hhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000941 951 LGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFA 1030 (1215)
Q Consensus 951 Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~ 1030 (1215)
+|-++...+..+--.+.+.+.......-+..+--+...|.....+ -+..+..+.+.|+..++.|...|+..|..++
T Consensus 3 mg~~~~~~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~v 78 (171)
T 1juq_A 3 MGSMAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEG----PQIAVRLLAHKIQSPQEWEALQALTVLEACM 78 (171)
T ss_dssp ---------CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCcc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455554333445555555555555566677777777777665432 2344566667788899999999999999999
Q ss_pred hcCcccccchhhh--hhHHHHHHhhcccccceeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 000941 1031 HNKPNLIKGLLPE--LLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1031 ~~~p~~i~~~l~~--llp~l~~~~~~~~~lir~v~mgpfkh~~Ddgl~~Rk~A~~~l~~ll~~ 1091 (1215)
.|++..+...+.. ++..|......+. .|| ....++|+-+.+.+..--..
T Consensus 79 kNCG~~Fh~evas~~Fl~eL~kl~~~k~-------~~~-----~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 79 KNCGRRFHNEVGKFRFLNELIKVVSPKY-------LGD-----RVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHSHHHHHHHHTSHHHHHHHHHHHCCCC-------CCT-----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHhhHHHHHHHHHHhcccc-------CCC-----CCCHHHHHHHHHHHHHHHHH
Confidence 9999887755532 5655554332110 011 12367888888877666444
No 138
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=54.51 E-value=14 Score=37.89 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=64.3
Q ss_pred HHhhhccccCCCcchHHHHHhhcCCCcchhHHHhhhhHhhhcCCCchhhhhhhHhHHHHHHhccCCChHHHHHHHHHHHH
Q 000941 949 ECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALST 1028 (1215)
Q Consensus 949 e~Lg~l~~~~~~~~lp~l~~~l~~~~~~~R~~~i~~lk~~i~~~~~~~~~~l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~ 1028 (1215)
..+|.+...+|+.+.+.+.+...+++..+|.+++..+-....+. .....+..+...+.|++.-||.+...+|..
T Consensus 119 ~~~g~~~~~~p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~------d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~ 192 (232)
T 3jxy_A 119 TFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQKM------DEELLFWIIGQLHSSKEFFIQKAIGWVLRE 192 (232)
T ss_dssp THHHHHHHHCGGGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGC------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45667777778878888999988888888866665543222111 112233334457889999999999999999
Q ss_pred HHhcCcccccchhhh
Q 000941 1029 FAHNKPNLIKGLLPE 1043 (1215)
Q Consensus 1029 ~~~~~p~~i~~~l~~ 1043 (1215)
+....|+.+.+++.+
T Consensus 193 ~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 193 YAKTNPDVVWEYVQN 207 (232)
T ss_dssp HTTTCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHH
Confidence 999999998888765
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=54.49 E-value=35 Score=31.69 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1215)
++.++..|+.+|..++++.|..+.... ...++.+...+...++.||++.+..+...+..+.
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999765321 2233333333334567899999888877775543
No 140
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=52.21 E-value=2.5e+02 Score=30.12 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhH
Q 000941 344 KVRRAAAKCLAALIVSRP----EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1215)
Q Consensus 344 kvR~~Aa~~L~~li~~~~----~~l~~~~~~i~p~Li~~~~d~e~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (1215)
.|-.-|...+..++..++ +.+...|..+....-+.+...+.-+|..+++.++.++-.-. ....
T Consensus 179 diasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~-------------N~~v 245 (341)
T 1upk_A 179 DIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH-------------NFTI 245 (341)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG-------------GHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch-------------HHHH
Confidence 344456666667776664 44555566666655555577788999999999999986421 1123
Q ss_pred HHHHH--HHHHHHHHHHhcccChhhHHHHHHHHHHHHH
Q 000941 420 LKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1215)
Q Consensus 420 L~~~~--p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~ 455 (1215)
+..++ |.-++.+...|++++...+..|+.+|.-++.
T Consensus 246 M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 246 MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 44555 7888999999999999999999999998875
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=51.60 E-value=3.1e+02 Score=31.04 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=69.5
Q ss_pred HHHhhhhccCCChhHHHHHHHHHHHHHHHhh---hhhhhhH--HHH-HHHHhhhhcCChHHHHHHHHHHHHHHHhhc--C
Q 000941 131 QLTKGITLKDMNTEIRCECLDILCDVLHKFG---NLMSNDH--ERL-LSALLPQLSANQASVRKKSVSCIASLASSL--S 202 (1215)
Q Consensus 131 ~L~~~l~~~~~~~~v~~~al~~L~~l~~~~g---~~l~~~~--~~l-l~~ll~~l~~~~~~vrk~a~~~l~~l~~~~--~ 202 (1215)
.+++.|.... ..++....+..+++++..-+ ....-++ +.. -..+...+..+++-....|..+++.++... .
T Consensus 81 ~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~~ 159 (480)
T 1ho8_A 81 PLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHN 159 (480)
T ss_dssp HHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCC
T ss_pred HHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCcc
Confidence 3444444432 56777888888888887654 1111011 111 112223334455666777777777664222 3
Q ss_pred HHHHHHHHH--HHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh--hccchhhhHHHHHH
Q 000941 203 DDLLAKATI--EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLID 258 (1215)
Q Consensus 203 ~~~~~~l~~--~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~--~~~~l~~iip~ll~ 258 (1215)
++.++.++. -++..+.+.+. ...+..+++++..+.+.-..| |...=..++|.++.
T Consensus 160 ~~~l~~l~~~~~~~~~L~~~~~-~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~ 218 (480)
T 1ho8_A 160 VKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFK 218 (480)
T ss_dssp HHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHH
T ss_pred HhHHHHHhhhHHHHHHhccccC-CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHH
Confidence 445666776 67777776432 234557899999999866543 33322334555543
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.42 E-value=84 Score=29.95 Aligned_cols=72 Identities=8% Similarity=0.090 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhh--hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~--~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
..+++|.+.++.+++.++.-|+.+|..++...+..|...+. .++..+...+.. ...+.++..++.++..-..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~-~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN-KAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHH
Confidence 44677888888889999999999999999987776654332 355555555553 2346777777777665543
No 143
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=51.16 E-value=43 Score=39.62 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCC
Q 000941 188 KKSVSCIASLASSLSDDLLAKATIEVVRN-LRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN 266 (1215)
Q Consensus 188 k~a~~~l~~l~~~~~~~~~~~l~~~ll~~-l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~ 266 (1215)
..-+.+|..-+..+.......++..+++. =.-.. ++...+.+++.++.++.+-| .|+..++..+++.+..
T Consensus 116 ~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r-~~~~v~~Y~~FL~~LvSa~~----~yl~~vl~mLV~~F~~---- 186 (649)
T 3tj1_A 116 NILLDILSSNINRIESSRGTFLIQSIINFEKWWEL-PPHTLSKYIYFIKILCSSIP----KWWQDVSMILVSCFIL---- 186 (649)
T ss_dssp HHHHHHHHHTGGGGCSGGGHHHHHHHHTCTTGGGS-CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHGGGS----
T ss_pred HHHHHHHHhhhhhcCchhHHHHHHHHhCCchhccC-CHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHhccC----
Confidence 34566666666666433344566655543 11111 24678889999999987654 4777777777777652
Q ss_pred cHHHHHHHHHHHHHHHHhChh
Q 000941 267 DEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 267 d~elre~al~~l~~l~~~~~~ 287 (1215)
..+.......+|..+++..|.
T Consensus 187 ~~~~~~~~H~~L~~Il~lvP~ 207 (649)
T 3tj1_A 187 PIKQTVCHHDMLKYFLRMIPS 207 (649)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG
T ss_pred CCcccHHHHHHHHHHHHHcCC
Confidence 222233467788888877774
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.48 E-value=92 Score=29.17 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhccc---CCCcHHHHHHHHHHHHHHHHhCh
Q 000941 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSA---SENDEELREYSLQALESFLLRCP 286 (1215)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~---~~~d~elre~al~~l~~l~~~~~ 286 (1215)
.+...+.+.+ ..+...++..+.++++.||.+|...+ ...+.-+...+... +..+.++|+-++..+..|...++
T Consensus 52 al~krl~~~n--~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 52 LLAHKIQSPQ--EWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHTCSS--HHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3444454433 24555667777777777776664432 23344444444311 12568899999999999998876
Q ss_pred hh
Q 000941 287 RD 288 (1215)
Q Consensus 287 ~~ 288 (1215)
..
T Consensus 130 ~~ 131 (149)
T 3g2s_A 130 EE 131 (149)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=49.66 E-value=1e+02 Score=28.87 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhccc---CCCcHHHHHHHHHHHHHHHHh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSA---SENDEELREYSLQALESFLLR 284 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~---~~~d~elre~al~~l~~l~~~ 284 (1215)
+..+...+++.+ ..+...++..+.++++.||.+|...+ ...+.-+...+... ...+.++|+-++..+..|...
T Consensus 40 ~rai~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQSPQ--EKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344455555543 35666788888888888888776544 34555566555421 124789999999999999988
Q ss_pred Chh
Q 000941 285 CPR 287 (1215)
Q Consensus 285 ~~~ 287 (1215)
.+.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 764
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=47.72 E-value=1.2e+02 Score=28.33 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcC------ChHHHHHHHHHHHHHHHhhcCH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA------NQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~------~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
++.++..|+.+|..++.++|..+..+. ...++.+...+.. ....||++.+..+..-+..++.
T Consensus 51 n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 51 QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999999998775332 3445555555442 2468999999999888776643
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=47.53 E-value=73 Score=30.38 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
++.++..|+.+|..++.++|..+..+. ...++.+...+.. .++.||++++..+-.-+..+..
T Consensus 65 n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 65 VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999998765321 2233333333322 4568999999988777765543
No 148
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=46.48 E-value=60 Score=29.98 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=57.4
Q ss_pred hhHhHHHHHHhccCCChHHHHHHHHHHHHHHhcCcccccchhhhhhHHHHHHhhcccccceeeeccCceee------ccc
Q 000941 1000 IFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHT------VDD 1073 (1215)
Q Consensus 1000 l~~~i~~~l~~l~D~d~~Vr~~a~~~L~~~~~~~p~~i~~~l~~llp~l~~~~~~~~~lir~v~mgpfkh~------~Dd 1073 (1215)
...++.-+++.|++.+..|+.=|+..|..++++.+.-|...+..-...+.. +. -|++. .|-
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~-l~------------~F~g~~dp~~G~d~ 113 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRN-LF------------HYKGHPDPLKGDAL 113 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHT-TT------------TCCCCCCTTTSSCH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHH-HH------------hcCCCCCcccccch
Confidence 355677778899999999999999999999999888876666554433222 21 24444 455
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 000941 1074 GLELRKAAFECVDTLLDS 1091 (1215)
Q Consensus 1074 gl~~Rk~A~~~l~~ll~~ 1091 (1215)
|..+|..|=|++..|.+.
T Consensus 114 g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 114 NKAVRETAHETISAIFSE 131 (140)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHhCc
Confidence 699999999988877554
No 149
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.25 E-value=1.2e+02 Score=28.09 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh--hhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~--~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1215)
..+++|.+.++.+++.++..|+.+|..++...|..|...+ ..++..+...+.. ..+.++...+.++..-..
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~--~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK--GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHH
Confidence 4467788888888988999999999999988877665322 3344445444432 236777777777665543
No 150
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.56 E-value=2.3e+02 Score=27.16 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHhhhhc------CChHHHHHHHHHHHHHHHhhcCH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLS------ANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~~~--~~ll~~ll~~l~------~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
++.++..|+.+|..+++++|..+..+. ...++.+...+. .....||++++..+..-+..++.
T Consensus 63 n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 63 QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999999998765321 223333333332 22458999999999888876654
No 151
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=43.09 E-value=1.9e+02 Score=26.18 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhh----
Q 000941 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR---- 244 (1215)
Q Consensus 169 ~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~---- 244 (1215)
+.-+...+..|+.....|+..+.-|+.+.- .-..++..+.+.+.+.. .+.+...+-.+..|++.+..+
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~------~a~~Iv~~i~~~l~~~~--~~~KL~~LYL~ndIl~ns~~~~~~~ 78 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIENKK------HHSTIVYHWMKWLRRSA--YPHRLNLFYLANDVIQNCKRKNAII 78 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTTTTCTH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHhcccChHH
Confidence 444555667777777788887777776532 12345666666666544 356777888999999987543
Q ss_pred hccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 245 FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 245 ~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
|.+.+..++|.++.... +++.|......+..|-.
T Consensus 79 f~~~f~~~l~~~~~~~~-----~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 79 FRESFADVLPEAAALVK-----DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHHHHTTHHHHHHTTC-----STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhcc
Confidence 44444555555554432 44567666667776654
No 152
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=40.46 E-value=1.4e+02 Score=27.66 Aligned_cols=89 Identities=6% Similarity=0.054 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH-hhhhcCCCC
Q 000941 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVE-LSTLISDSD 697 (1215)
Q Consensus 619 ~a~~al~~i~~s~~~~~~~~~l~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~-l~~~l~~~d 697 (1215)
..+..|..+|... ..+...++..+...+.+.....|..++=.+..|+.+++..+. ..+...+.. +.......|
T Consensus 25 ~~I~~LT~~a~~~-----~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~-~~F~~~l~~~f~~~~~~~d 98 (144)
T 1sz9_A 25 PIITTLTKLAEEN-----ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYT-IYFSRNLFNLYKRTYLLVD 98 (144)
T ss_dssp HHHHHHHHHHHHT-----GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHH-HHHHTTHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHhCC
Confidence 3455566666321 346678888899999999999999999999999999886432 122221111 122222235
Q ss_pred hhhHHHHHHHHHHHhh
Q 000941 698 LHMTALALELCCTLMA 713 (1215)
Q Consensus 698 ~~~~~~al~~l~~l~~ 713 (1215)
...+.-....+...-+
T Consensus 99 ~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 99 NTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5555555555555443
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.21 E-value=1.4e+02 Score=29.93 Aligned_cols=74 Identities=9% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChh
Q 000941 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1215)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~ 287 (1215)
+..+.+.|.+.+ +.+...++.++.++++.+|.+|...+ ...+..+...+.. ..+.++|+-+++.++.|....+.
T Consensus 44 ~r~l~krl~~~n--~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 44 FAAIKKKMNSPN--PHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHhcc
Confidence 334445555443 34566777888888888877665433 1233333333332 35689999999999999887654
No 154
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=36.44 E-value=1.3e+02 Score=30.81 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHHHHHhChhhhcccH--HHHHHHHHHHhc
Q 000941 266 NDEELREYSLQALESFLLRCPRDISSYC--DEILHLTLEYLS 305 (1215)
Q Consensus 266 ~d~elre~al~~l~~l~~~~~~~~~~~l--~~ii~~~l~~l~ 305 (1215)
..+-+|=+++..++.+++..-.++-.|+ .+++|.|++.|.
T Consensus 114 ~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 114 PFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 3466899999999999987666776665 478999999985
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=36.25 E-value=1e+02 Score=29.14 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh--hhHHH-HHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPV-LIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~--~iip~-ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
.+..+.+.+++.. +..++..++..+.++++.||.+|...+. ..+.- +...+....+.+.++|+-++..+..|...+
T Consensus 54 a~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 3444555565322 1345667888899999999887766432 24443 344443222345689999999999998754
Q ss_pred h
Q 000941 286 P 286 (1215)
Q Consensus 286 ~ 286 (1215)
+
T Consensus 133 ~ 133 (157)
T 1elk_A 133 R 133 (157)
T ss_dssp T
T ss_pred C
Confidence 3
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.55 E-value=1.9e+02 Score=29.22 Aligned_cols=73 Identities=11% Similarity=0.234 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccch--hhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhh
Q 000941 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1215)
Q Consensus 212 ~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l--~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~ 288 (1215)
.+.+.|.+.+ ..+...++.++.++++.+|.+|...+ ...+..+...++. ..+.++|+-++..+..|....+.+
T Consensus 49 al~krl~~~n--~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 49 SIKKKVNDKN--PHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHTCSS--HHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3444454433 24555667777777777776554432 2233333333332 356889999999999999877653
No 157
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=34.35 E-value=3e+02 Score=30.36 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHH--HHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP 458 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~ 458 (1215)
......+++|+.++++... .+... -|..+..+...+..+.+.+|..++.+|..++....
T Consensus 134 ~~~q~~~l~CLkalmN~~~----------------G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKF----------------GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHH----------------HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHhcchh----------------hHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 4566788899888876431 12222 25667888888888889999999999999987653
No 158
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.25 E-value=2.9e+02 Score=25.70 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhh------hHHHHHHHHhhhh--cCChHHHHHHHHHHHHHHHhhcCH
Q 000941 142 NTEIRCECLDILCDVLHKFGNLMSN------DHERLLSALLPQL--SANQASVRKKSVSCIASLASSLSD 203 (1215)
Q Consensus 142 ~~~v~~~al~~L~~l~~~~g~~l~~------~~~~ll~~ll~~l--~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1215)
++.++..|+.+|..+++++|..+.. +.+.+...+.+.. ......||++.+..+...+..+++
T Consensus 61 n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 61 QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999987643 2344443333211 123468999999999888877654
No 159
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=32.49 E-value=4e+02 Score=28.22 Aligned_cols=151 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhh------hhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhccCC
Q 000941 428 VKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI------GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1215)
Q Consensus 428 ~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~------~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1215)
+..+.+.+ ......+.-++.+++-++.. +....++ ..++..+...+.++..... +.-++.++..++.+..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n-~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPAN-QLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHH-HHHHHHHHHHGGGSHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHH-HHHHHHHHHHccCCch
Q ss_pred CCcchh-hhhhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCCcCCCCCChhcHHHHHHHHHHHhhccCCCHHHHHH
Q 000941 502 PPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1215)
Q Consensus 502 ~~~~~~-~l~~l~p~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~d~~~~Vr~~ 580 (1215)
...+-- +...+++.+...+.+....++..+-.++-++.-..... .-.+-...+...+.+.+. ...|.|..-+
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~------~~~~~~~~ll~~l~~il~-~~~d~EalyR 253 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD------HNIEGKAQCLSLISTILE-VVQDLEATFR 253 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHHT-TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc------CCchHHHHHHHHHHHHHh-ccCCHHHHHH
Q ss_pred HHHHHHHHH
Q 000941 581 AISCMGLVI 589 (1215)
Q Consensus 581 Ai~~lg~l~ 589 (1215)
++.|+|.++
T Consensus 254 ~LvALGtL~ 262 (304)
T 3ebb_A 254 LLVALGTLI 262 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 160
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=30.60 E-value=4.3e+02 Score=26.56 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=48.3
Q ss_pred ccChhHHHHHHHHHHHHHhhcccCCCchhchHHHHhcccCC-cchhHhhHHHHHHHHHhhChhhHHHhHHH
Q 000941 1072 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDS 1141 (1215)
Q Consensus 1072 Ddgl~~Rk~A~~~l~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~~~~~~l~~l~~~~p~~~~~~l~~ 1141 (1215)
|+..-.|+.|+.++.. . ....|...++ +++...+.| ++-|++-.--+|..+...+|..+.+.|++
T Consensus 142 s~~~w~rR~ai~~~l~---~-~~~~d~~~~~-~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 142 SDNIWLQRAAILFQLK---Y-KQKMDEELLF-WIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQN 207 (232)
T ss_dssp SSCHHHHHHHHHTTTT---C-GGGCCHHHHH-HHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH---H-HhCCCHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 5667788888875421 1 2345555566 467777888 77799988889999999999999988874
No 161
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=29.15 E-value=2e+02 Score=26.70 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhc----cchhhhHHHHHHhhccc
Q 000941 188 KKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG----PHLGDTVPVLIDYCTSA 263 (1215)
Q Consensus 188 k~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~----~~l~~iip~ll~~~~~~ 263 (1215)
+..++.|..++.... .....++..+.+.+++.. ++.+-.++-.+.+|++.++.+.+ +|.+...+.+.+.+...
T Consensus 23 ~~~I~~LT~~a~~~~-~~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~ 99 (145)
T 3d9j_A 23 KAKMTQITKAAIKAI-KFYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL 99 (145)
T ss_dssp HHHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHH
Confidence 334444544443221 124556666666666654 35778889999999999987433 44444433333322110
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 000941 264 SENDEELREYSLQALESFLL 283 (1215)
Q Consensus 264 ~~~d~elre~al~~l~~l~~ 283 (1215)
-..+++.|......+..|-+
T Consensus 100 ~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 100 YRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp TSSCGGGHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhcC
Confidence 01236778777777777754
No 162
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.85 E-value=1.2e+02 Score=27.99 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=47.5
Q ss_pred HHHHHhcCCCcchhhhhHHHHHHHhccccCCCChHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhhccChhh
Q 000941 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR 81 (1215)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~~~l~~l~~~~~~~~ 81 (1215)
.++.+-++.||.- +-.-|++++.+..++.+.+....|+++|++-|+++++.|..-|.++|..|+..-++..
T Consensus 14 ~~V~~ATs~d~~~---~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 14 RMIDAVTSDEDKV---APVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHHHTTCSCSSC---CCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHhcCCCCC---CcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 3445544444322 3344555655544433445568999999999999999898889999988887666543
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.57 E-value=2e+02 Score=28.82 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhhhh--hhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~~~--~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
..+++|.+.++.+++.++.-++.+|..++...+..|...+. .++..+...+.+. ....++..++.++..-...
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-PHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 44667788888899999999999999999887665533221 2444444544432 2356777777776665443
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.51 E-value=2.1e+02 Score=28.91 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhCchhhhhh--hhhhhHHHHHhhcCCCCcchhHHHHHHHHHHHhcc
Q 000941 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1215)
Q Consensus 426 ~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~~~l~~~--~~~lv~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1215)
..+++|.+.++.+++.++..|+.+|..++...+..|... -..++..+...++. .....++..++.++..-...
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHH
Confidence 446778888888999999999999999998876655332 12334444444432 33467888888777766543
No 165
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.49 E-value=2.8e+02 Score=25.88 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcc-cChhhHHHHHHHHHHHHHhCchhhhhhhh--hhhHH-HHHhhcCCC-CcchhHHHHHHHHHHHhccC
Q 000941 426 KIVKSINRQLRE-KSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPG-IEKSLNDKS-STSNLKIEALTFTRLVLSSH 500 (1215)
Q Consensus 426 ~i~~~l~~~L~~-~~~~~r~~~~~~l~~L~~~~~~~l~~~~~--~lv~~-l~~~l~d~~-~~~~~~~~al~~l~~l~~~~ 500 (1215)
..+++|.+.+.. +++.+..-|+.+|..++...+..|...+. .++.. +.+.+.++. ....++...+.++..-....
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 445677777764 46667777999999999888776654332 34443 444455442 22368888888888776543
No 166
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=27.06 E-value=1.2e+02 Score=27.66 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhh---hhccc
Q 000941 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPH 248 (1215)
Q Consensus 172 l~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~---~~~~~ 248 (1215)
+...+..|+.....|+..+.-|+.+.- .-..++..+.+.+..... +.+-..+-++..|++.+.. .|.+.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~------~a~~iv~~i~~~l~~~~~--~~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRK------HAGPIVSVWHRELRKAKS--NRKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSCT--TTHHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344456677667788888777776532 123455566666665543 4566778888899876632 23333
Q ss_pred hhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHH
Q 000941 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1215)
Q Consensus 249 l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~ 283 (1215)
+...+|.++..... ..+++.|+.....+..|-.
T Consensus 81 f~~~l~~~~~~~~~--~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 81 FESVLVDAFSHVAR--EADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HHTTHHHHHHHHHH--HHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC
Confidence 33333333332211 1234455555556665543
No 167
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=25.50 E-value=67 Score=26.00 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=31.2
Q ss_pred HhhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc
Q 000941 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1215)
Q Consensus 73 l~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~ 114 (1215)
...+++.++++.++..++.-+.+-+. -.|.+.++|++++.+
T Consensus 3 i~SKYsd~qvE~ll~eli~VLEKH~A-p~DLSLMvLGNmvTN 43 (83)
T 2jpq_A 3 ITSKYTDEQVEKILAEVALVLEKHAA-SPELTLMIAGNIATN 43 (83)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 34678889999999999988754332 268999999987753
No 168
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.95 E-value=4.1e+02 Score=24.47 Aligned_cols=113 Identities=7% Similarity=0.052 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchhhhHH-HHHHh
Q 000941 181 ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVP-VLIDY 259 (1215)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~~iip-~ll~~ 259 (1215)
++.+.|..-+.-|+.+.- .-..++..+.+.+.+.. +..+-.++-.+.+|++.+|..|.+++...++ .+.+.
T Consensus 22 nSk~~I~~LT~~a~~~~~------~a~~Iv~~i~~~i~k~~--p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~ 93 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENIS------CAQYFVDAIESRIEKCM--PKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRT 93 (144)
T ss_dssp CCHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCC--HhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 444555554444444321 23456666666666544 4677788999999999998766665544333 33344
Q ss_pred hcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHHHh
Q 000941 260 CTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1215)
Q Consensus 260 ~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~~l 304 (1215)
.. .-|++.|......+..|-...|....-|=++++.-+-..+
T Consensus 94 ~~---~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 94 YL---LVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFL 135 (144)
T ss_dssp HH---TSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHH
T ss_pred HH---hCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHH
Confidence 43 2478899999999999876644322223345555444444
No 169
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=24.69 E-value=69 Score=25.77 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=30.6
Q ss_pred hhccChhhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHhc
Q 000941 74 VKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1215)
Q Consensus 74 ~~~~~~~~~~~lv~~L~~~~~~~~~~~r~~a~~aL~~~i~~ 114 (1215)
..+++.++++.++..++.-+.+-+. -.|.+.++|++++.+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~A-p~DLSLMvLGN~vTn 43 (80)
T 2juw_A 4 QSKYSNTQVESLIAEILVVLEKHKA-PTDLSLMALGNCVTH 43 (80)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 4678889999999999988754332 268899999987753
No 170
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=23.08 E-value=2.9e+02 Score=29.12 Aligned_cols=95 Identities=8% Similarity=0.088 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCccc-------chhhhhHHHHHHhhcc-----chhHHHHHHHHHHHHcCCCCCchhHH
Q 000941 572 DQDQEVKECAISCMGLVISTFGDNLG-------AELPACLPVLVDRMGN-----EITRLTAVKAFAVIAASPLHIDLTCV 639 (1215)
Q Consensus 572 d~~~~Vr~~Ai~~lg~l~~~~~~~l~-------~~~~~~l~~L~~~L~~-----e~~r~~a~~al~~i~~s~~~~~~~~~ 639 (1215)
..+..+|+.|...||..+.+-+..+. .++..+++-|...... ......-+.+|..++.++ .+|..+
T Consensus 81 ~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F~~~ 158 (315)
T 3qml_C 81 NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--EDLPIY 158 (315)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC--C
T ss_pred cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hhhhhc
Confidence 35677899999988887776643322 2334444433222211 123344456666666443 223221
Q ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHH
Q 000941 640 LEHVIAELTAFLRKA--NRALRQATLGTMNSLVV 671 (1215)
Q Consensus 640 l~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~ 671 (1215)
=+..|...+... +...+.-++..+..+..
T Consensus 159 ---~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 159 ---STVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp ---CHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 122333333333 77888888888887764
No 171
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=21.66 E-value=8.4e+02 Score=31.62 Aligned_cols=146 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 000941 151 DILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTN 230 (1215)
Q Consensus 151 ~~L~~l~~~~g~~l~~~~~~ll~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~ 230 (1215)
..+......+...+..+.+.++...-..+.+.++.|+.-+......+-...+.-.-++++..++..+.+.+. .....+
T Consensus 381 ~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~--~eVd~A 458 (1323)
T 3s4w_B 381 QLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTE--AEVDTA 458 (1323)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH--HHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCc--HHHHHH
Q ss_pred HHHHHHHHhhhhhhhccchhhhHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHhChhhhcccHHHHHHHHHH
Q 000941 231 IQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1215)
Q Consensus 231 i~~l~~l~~~~~~~~~~~l~~iip~ll~~~~~~~~~d~elre~al~~l~~l~~~~~~~~~~~l~~ii~~~l~ 302 (1215)
+..+..+++..|..+.||-. .+..+++++.. -....+|.. +..|..++-..+.+-..++.+=+..+.+
T Consensus 459 LdvL~~L~~~~~~~l~~~a~-~l~giLD~l~~--l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIR 526 (1323)
T 3s4w_B 459 LDVLLELIVLNASAMRLNAA-FVKGILDYLEN--MSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIR 526 (1323)
T ss_dssp HHHHHHHHHHCHHHHHHTHH-HHHGGGGGGGG--CCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHhHHHH-HHHHHHHhhcC--CCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHH
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=20.44 E-value=3e+02 Score=25.68 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhhhhhhccchh--hhHH-HHHHhhcccCCCcHHHHHHHHHHHHHHHHhC
Q 000941 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVP-VLIDYCTSASENDEELREYSLQALESFLLRC 285 (1215)
Q Consensus 209 l~~~ll~~l~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~l~--~iip-~ll~~~~~~~~~d~elre~al~~l~~l~~~~ 285 (1215)
.+..+...+.... +......++..+.++++.||.+|...+. ..+. .+...+........++|+-++..+..|...+
T Consensus 54 A~ral~KRl~~~~-n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNY-NHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCC-BHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3444555565321 2234456888999999999977665442 2332 1333333211234579999999999999877
Q ss_pred hh
Q 000941 286 PR 287 (1215)
Q Consensus 286 ~~ 287 (1215)
+.
T Consensus 133 ~~ 134 (152)
T 3rru_A 133 PG 134 (152)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.34 E-value=2.6e+02 Score=28.24 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcCCCCCCChhhHHHHH--HHHHHHHHHHHhcccChhhHHHHHHHHHHHHHhCc
Q 000941 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP 458 (1215)
Q Consensus 384 ~~Vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--~p~i~~~l~~~L~~~~~~~r~~~~~~l~~L~~~~~ 458 (1215)
......++.|+.++++... .+... -|..+..+...+..+++++|..++.+|..++...+
T Consensus 68 ~~~~~~~l~CLkalmn~~~----------------G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKF----------------GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHH----------------HHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhCChH----------------HHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 4455677888877765321 12221 15567788888888888999999999998887653
Done!