BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000943
(1214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 3/161 (1%)
Query: 13 KYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISI 72
+Y+VFLSFRG DTR+ FTD L +L + I FRDD EL +GK I P L +AI++S+I +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73 IVFSRNYAHSTWCLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHE 132
+ S YA S WCL EL +IV + + +++I PIFY V+P+ VR QT +++AF KH
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEED-PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHA 153
Query: 133 ETFRMNIEKVQKWRDALKKVANISGWELKDRNESEFIVDIV 173
F + + +Q W+DALKKV ++ GW + ++ I D V
Sbjct: 154 NKF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKV 192
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 13 KYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISI 72
KYDVFLSFRG DTR NF L L ++ I F+DDKELE G+ SP L IE SR ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73 IVFSRNYAHSTWCLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHE 132
+V S NYA S+WCLDELV I++ + + PIFY VEP VR QT E F KH
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGS--ITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125
Query: 133 ETFRMNIEKVQKWRDALKKVANISG 157
R + EKV KWR AL A +SG
Sbjct: 126 S--REDPEKVLKWRQALTNFAQLSG 148
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 610 LNMCYSRMERMWSGIKPL-------SNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCT 662
+N+ R+E W+GI+ L NLK +++ N+ P + LP LEELDLRGCT
Sbjct: 183 VNLQSLRLE--WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSM 721
LR+ P L + LKDC++L TLP I + L KL L GC L + P ++ +
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 649 GLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGC 708
GL NL+ L L T +R + S+ +NL S+ +++ P + L +L L GC
Sbjct: 181 GLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 709 SKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQXXXXXXXXXXEKCTHLVGLPSTINDL 768
+ L+ +P + G L L L + C++L+ LP I+ L
Sbjct: 240 TALRNYPPIFGGRAPLKRLIL-----------------------KDCSNLLTLPLDIHRL 276
Query: 769 TSLITLNLSGC 779
T L L+L GC
Sbjct: 277 TQLEKLDLRGC 287
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 47/261 (18%)
Query: 682 LKDCTDL---TTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP 738
LK DL T P ++A+ LR + L +FP+ + L +D + ELP
Sbjct: 68 LKATADLLEDATQPGRVAL-ELRSV------PLPQFPDQAFRLSHLQHXTIDAAGLXELP 120
Query: 739 SSIQXXXXXXXXXXEKCTHLVGLPSTINDLTSLITLNLSGC--------------SKSKN 784
+ Q + L LP++I L L L++ C + ++
Sbjct: 121 DTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 785 VGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVAXXXX 844
G+ +L+ L T +R+ +SI ++QN ++L ++ P L + H++
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI------RNSPLSALGPAIHHLPKLEE 233
Query: 845 XXXXXXXXXXXXXXDCNLGEGAIPSDIGNLCSLKELCLSK-NKFILLPESISCLSKLWII 903
P G LK L L + + LP I L++L +
Sbjct: 234 LDLRGCTALRNY-----------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 904 DLEEC---KRLQSL-SQLPSN 920
DL C RL SL +QLP+N
Sbjct: 283 DLRGCVNLSRLPSLIAQLPAN 303
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 KYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISI 72
++ F+S+ G D+ + L L+++G + ++ GKSI + IE+S SI
Sbjct: 12 QFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVFSRNYAHSTWCLDEL 89
V S N+ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 529 NTGTEVIEGIQYDYSSQDDDVHLSASAKAFLKMTNLRMLTIGNVQLPEGLEFLPNELRFL 588
NTG IEGIQY ++ + L +T L+ LT ++ L
Sbjct: 56 NTGVTTIEGIQY----LNNLIGLELKDNQITDLTPLKNLT---------------KITEL 96
Query: 589 EWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLT 648
E G P K++ + ++ L++ +++ + + + LSNL+++ L + + + L
Sbjct: 97 ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYL-DLNQITNISPLA 154
Query: 649 GLPNLEELDLRGCTRLRDIHPSLLLHKNLVSV-----NLKDCTDLTTLPNKIAMIHLRKL 703
GL NL+ L + G ++ D+ P L K L ++ + D + L +LPN I +HL+
Sbjct: 155 GLTNLQYLSI-GNNQVNDLTPLANLSK-LTTLRADDNKISDISPLASLPNLIE-VHLKDN 211
Query: 704 VLSGCSKL 711
+S S L
Sbjct: 212 QISDVSPL 219
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase
Mutant
Length = 774
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 449 RGKSRDYVTKILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ---- 500
R K R++ ++D ++D R LIDK L+ + L M + L E G++
Sbjct: 97 RDKIREH-PAVIDIYEYDIPFAKRYLIDKGLVPMEGDEELKMLAFDIETLYEEGEEFAEG 155
Query: 501 -IVKKQSPEEPGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
I+ +E G R WK D+ +V +T E+I+ +D DV ++ + F
Sbjct: 156 PILMISYADEEGARVITWKNVDLPYVDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNF 214
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 13 KYDVFLSFRGEDTRKNFTDHLCAALDQK--GIIVFRDDKELERGKSISPGLFKAIEESRI 70
++ F+S+ D+ + L L+++ I++ + + GKSIS + IE+S
Sbjct: 35 RFHAFISYSEHDSLW-VKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93
Query: 71 SIIVFSRNYAHSTWCLDEL 89
SI V S N+ + WC E
Sbjct: 94 SIFVLSPNFVQNEWCHYEF 112
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 449 RGKSRDYVTKILDYCDFDAVIGIRVLIDKSLIEISSGNRLWM--------HDLLQEMGQ- 499
R K R++ ++D ++D R LID+ LI + L M + +E G+
Sbjct: 97 RDKIREH-PAVVDIYEYDIPFAKRYLIDRGLIPMEGDEELRMLAFDIETLYHEGEEFGEG 155
Query: 500 QIVKKQSPEEPGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
I+ +E G R WK D+ +V + +T E+I+ +D DV ++ + F
Sbjct: 156 PILMISYADEEGARVITWKNIDLPYVESVSTEKEMIKRFLKVIQEKDPDVLITYNGDNF 214
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 449 RGKSRDYVTKILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ---- 500
R K R++ ++D ++D R LIDK L+ + L M + L G++
Sbjct: 97 RDKIREH-PAVIDIYEYDIPFAKRYLIDKGLVPMEGDEELKMLAFDIETLYHEGEEFAEG 155
Query: 501 -IVKKQSPEEPGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
I+ +E G R WK D+ +V +T E+I+ +D DV ++ + F
Sbjct: 156 PILMISYADEEGARVITWKNVDLPYVDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNF 214
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 459 ILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ-----IVKKQSPEE 509
++D ++D R LIDK LI + L M + L G++ I+ +E
Sbjct: 106 VVDIYEYDIPFAKRYLIDKGLIPMEGDEELKMLAFDIETLYHEGEEFAEGPILMISYADE 165
Query: 510 PGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
G R WK D+ +V +T E+I+ +D DV ++ + F
Sbjct: 166 EGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNF 214
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 459 ILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ-----IVKKQSPEE 509
++D ++D R LIDK LI + L M + L G++ I+ +E
Sbjct: 106 VVDIYEYDIPFAKRYLIDKGLIPMEGDEELKMLAFDIETLYHEGEEFAEGPILMISYADE 165
Query: 510 PGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
G R WK D+ +V +T E+I+ +D DV ++ + F
Sbjct: 166 EGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNF 214
>pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
Length = 500
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 335 HLLTTYGVDEVLKLK-ELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393
H ++ YG++EVLK E+ ++ L+ F K A + KEY +L K K + L
Sbjct: 140 HFISRYGIEEVLKWPFEIWNEPNLKEFWKDADE-----KEYFKLYKVTAKAIKEVNENLK 194
Query: 394 VLGSFLCG 401
V G +CG
Sbjct: 195 VGGPAICG 202
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 459 ILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ-----IVKKQSPEE 509
++D ++D R LIDK LI + L M + L G++ I+ +E
Sbjct: 106 VVDIYEYDIPFAKRYLIDKGLIPMEGDEELKMLAFDIETLYHEGEKFAEGPILMISYADE 165
Query: 510 PGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
G R W+ D+ +V +T E+I+ +D DV ++ + F
Sbjct: 166 EGARVITWRNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNF 214
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 459 ILDYCDFDAVIGIRVLIDKSLIEISSGNRLWMH----DLLQEMGQQ-----IVKKQSPEE 509
++D ++D R LIDK LI + L M + L G++ I+ +E
Sbjct: 106 VVDIYEYDIPFAKRYLIDKGLIPMEGDEELKMLAFDIETLYHEGEKFAEGPILMISYADE 165
Query: 510 PGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAF 558
G R W+ D+ +V +T E+I+ +D DV ++ + F
Sbjct: 166 EGARVITWRNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNF 214
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 550 HLSASAKAFLKMTNLRMLTIGNVQLPEGLEFLPNELRFLE-WHGYPFKSLPS-----NFQ 603
HL S +F ++ +L + + +LP R+LE WHG +K L + Q
Sbjct: 133 HLGVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQ 192
Query: 604 PENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEE 655
N F LN Y + + + P + LK+ C K++ P N E+
Sbjct: 193 GRNAFALN--YDSVVQRIAQSFPQNWLKLS--CEVKSITREPSKNVTVNCED 240
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 861 NLG----EGAIPSDIGNLCSLKELCLSKNKF-ILLPESISCLSKLWIIDLEE 907
NLG G+IP ++G+L L L LS NK +P+++S L+ L IDL
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,317,179
Number of Sequences: 62578
Number of extensions: 1374682
Number of successful extensions: 3188
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3145
Number of HSP's gapped (non-prelim): 52
length of query: 1214
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1104
effective length of database: 8,089,757
effective search space: 8931091728
effective search space used: 8931091728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)