Query 000943
Match_columns 1214
No_of_seqs 895 out of 5974
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 11:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-139 2E-144 1378.8 91.0 964 1-1032 1-1004(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2E-55 4.4E-60 548.3 33.1 642 194-937 161-847 (889)
3 PLN03194 putative disease resi 100.0 1.8E-41 3.8E-46 335.3 14.3 157 5-182 18-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-34 3.2E-39 328.2 16.2 268 196-467 1-283 (287)
5 PLN00113 leucine-rich repeat r 100.0 1E-31 2.2E-36 355.7 25.8 429 508-942 42-498 (968)
6 PLN00113 leucine-rich repeat r 100.0 5E-30 1.1E-34 339.7 22.6 385 556-942 158-570 (968)
7 KOG0444 Cytoskeletal regulator 99.9 5E-28 1.1E-32 270.6 -3.2 340 555-915 25-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 5.1E-28 1.1E-32 270.6 -4.4 353 564-939 9-382 (1255)
9 KOG4194 Membrane glycoprotein 99.9 1.2E-24 2.5E-29 243.3 7.9 355 565-939 55-436 (873)
10 PLN03210 Resistant to P. syrin 99.9 7.9E-23 1.7E-27 270.9 24.7 313 556-915 582-910 (1153)
11 KOG0472 Leucine-rich repeat pr 99.9 8.1E-26 1.7E-30 242.8 -7.4 254 562-823 45-309 (565)
12 KOG4194 Membrane glycoprotein 99.9 4E-24 8.7E-29 239.1 3.8 337 553-906 93-447 (873)
13 KOG0472 Leucine-rich repeat pr 99.9 1.9E-24 4.1E-29 232.3 -7.8 352 553-930 82-539 (565)
14 KOG0618 Serine/threonine phosp 99.9 2.4E-23 5.2E-28 245.5 -2.6 352 556-932 39-489 (1081)
15 PF01582 TIR: TIR domain; Int 99.8 1.1E-20 2.3E-25 189.2 5.1 135 16-150 1-140 (141)
16 smart00255 TIR Toll - interleu 99.8 8.8E-19 1.9E-23 175.8 12.3 136 13-153 1-138 (140)
17 KOG0618 Serine/threonine phosp 99.8 2.5E-21 5.4E-26 228.6 -7.8 337 584-929 46-462 (1081)
18 PRK15387 E3 ubiquitin-protein 99.7 4E-17 8.7E-22 200.8 15.6 254 585-909 203-456 (788)
19 PRK15387 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 196.8 17.8 255 608-937 204-463 (788)
20 PRK15370 E3 ubiquitin-protein 99.7 1.4E-16 3.1E-21 197.6 13.1 223 563-805 179-405 (754)
21 PRK15370 E3 ubiquitin-protein 99.6 9.8E-16 2.1E-20 190.2 12.3 159 582-755 177-335 (754)
22 PF13676 TIR_2: TIR domain; PD 99.5 6.2E-15 1.3E-19 138.9 5.0 92 16-118 1-92 (102)
23 PRK04841 transcriptional regul 99.4 9.6E-12 2.1E-16 164.6 26.8 296 186-505 9-335 (903)
24 KOG0617 Ras suppressor protein 99.4 6.8E-15 1.5E-19 141.6 -2.7 168 596-766 24-193 (264)
25 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.6E-19 139.9 -2.8 94 687-782 22-115 (264)
26 KOG4237 Extracellular matrix p 99.4 2.5E-14 5.4E-19 155.1 -2.3 249 575-824 59-359 (498)
27 KOG4237 Extracellular matrix p 99.3 5.1E-14 1.1E-18 152.7 -3.0 145 588-756 51-199 (498)
28 cd00116 LRR_RI Leucine-rich re 99.3 4.9E-14 1.1E-18 162.7 -5.0 259 625-907 20-316 (319)
29 cd00116 LRR_RI Leucine-rich re 99.3 2.1E-13 4.6E-18 157.4 -4.5 237 647-909 19-289 (319)
30 PRK00411 cdc6 cell division co 99.3 1.5E-09 3.4E-14 129.0 28.0 285 188-483 27-358 (394)
31 KOG4658 Apoptotic ATPase [Sign 99.2 7.6E-12 1.6E-16 158.1 8.3 278 595-905 513-801 (889)
32 COG3899 Predicted ATPase [Gene 99.1 6.3E-10 1.4E-14 141.5 18.2 309 192-504 1-388 (849)
33 TIGR00635 ruvB Holliday juncti 99.1 1.3E-09 2.8E-14 124.8 18.1 268 191-487 4-293 (305)
34 TIGR02928 orc1/cdc6 family rep 99.1 2.2E-08 4.7E-13 117.9 28.4 286 188-484 12-351 (365)
35 PRK00080 ruvB Holliday junctio 99.1 4.5E-10 9.7E-15 129.4 11.9 261 188-487 22-314 (328)
36 PF01637 Arch_ATPase: Archaeal 99.1 9.1E-10 2E-14 120.8 13.1 197 193-394 1-233 (234)
37 COG2909 MalT ATP-dependent tra 99.0 2.8E-08 6.2E-13 119.4 23.1 297 187-506 15-342 (894)
38 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.7E-16 139.1 -4.2 212 610-909 55-271 (722)
39 PF05729 NACHT: NACHT domain 98.9 7.8E-09 1.7E-13 106.7 12.6 142 215-364 1-163 (166)
40 TIGR03015 pepcterm_ATPase puta 98.9 9.7E-08 2.1E-12 107.2 21.4 179 213-399 42-242 (269)
41 KOG3678 SARM protein (with ste 98.9 4.1E-09 9E-14 116.0 9.5 91 11-109 610-708 (832)
42 KOG0532 Leucine-rich repeat (L 98.8 5.4E-10 1.2E-14 127.2 -2.4 189 585-779 77-270 (722)
43 KOG1259 Nischarin, modulator o 98.8 2.1E-09 4.5E-14 112.9 1.2 136 718-891 280-415 (490)
44 PTZ00112 origin recognition co 98.7 6.7E-07 1.5E-11 108.4 21.6 245 187-445 751-1030(1164)
45 KOG3207 Beta-tubulin folding c 98.7 4.1E-09 8.9E-14 116.9 2.1 198 672-906 118-334 (505)
46 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.9E-13 121.1 6.5 175 584-785 117-293 (394)
47 KOG3207 Beta-tubulin folding c 98.7 2.6E-09 5.6E-14 118.4 0.2 204 604-826 120-341 (505)
48 COG3903 Predicted ATPase [Gene 98.7 1.4E-08 3E-13 113.4 5.8 281 213-504 13-316 (414)
49 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.4E-13 119.5 7.3 194 610-807 98-296 (394)
50 COG2256 MGS1 ATPase related to 98.6 1.2E-06 2.6E-11 97.4 18.5 149 212-390 46-207 (436)
51 KOG1259 Nischarin, modulator o 98.6 9.5E-09 2.1E-13 108.1 1.9 149 553-707 208-383 (490)
52 PRK06893 DNA replication initi 98.6 9E-07 2E-11 96.3 17.1 175 188-395 13-203 (229)
53 PRK15386 type III secretion pr 98.6 1.6E-07 3.5E-12 107.1 10.8 60 721-785 51-110 (426)
54 KOG4341 F-box protein containi 98.6 1.9E-09 4E-14 118.9 -5.5 275 629-932 139-439 (483)
55 PRK13342 recombination factor 98.5 5.3E-06 1.1E-10 98.7 21.3 174 190-395 11-196 (413)
56 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.4E-06 7.4E-11 92.0 15.3 173 190-396 14-202 (226)
57 PTZ00202 tuzin; Provisional 98.4 3.1E-05 6.8E-10 87.8 21.8 194 152-364 216-434 (550)
58 PF14580 LRR_9: Leucine-rich r 98.4 1.9E-07 4.2E-12 95.5 3.9 87 595-684 9-97 (175)
59 KOG4341 F-box protein containi 98.4 1.1E-08 2.3E-13 113.1 -6.6 261 624-914 160-442 (483)
60 KOG1909 Ran GTPase-activating 98.4 2.2E-08 4.8E-13 108.4 -4.1 231 647-909 26-309 (382)
61 PRK12402 replication factor C 98.3 1.5E-05 3.3E-10 92.7 18.9 199 190-393 14-224 (337)
62 PF14580 LRR_9: Leucine-rich r 98.3 2.6E-07 5.7E-12 94.5 3.0 102 560-661 17-123 (175)
63 PRK14963 DNA polymerase III su 98.3 8.6E-06 1.9E-10 98.0 16.3 193 189-392 12-214 (504)
64 PRK15386 type III secretion pr 98.3 2.5E-06 5.5E-11 97.5 11.0 40 676-716 73-112 (426)
65 PF13173 AAA_14: AAA domain 98.3 1.2E-06 2.5E-11 86.1 7.0 119 215-356 3-127 (128)
66 PF13191 AAA_16: AAA ATPase do 98.3 2.2E-06 4.8E-11 90.2 9.5 50 192-241 1-51 (185)
67 PRK04195 replication factor C 98.3 2E-05 4.3E-10 95.7 18.9 178 189-393 12-200 (482)
68 PRK00440 rfc replication facto 98.3 4.2E-05 9E-10 88.3 20.8 181 189-391 15-199 (319)
69 PLN03025 replication factor C 98.3 5E-05 1.1E-09 87.2 21.1 180 189-390 11-195 (319)
70 PRK14961 DNA polymerase III su 98.3 0.00012 2.6E-09 85.4 24.3 190 189-391 14-216 (363)
71 TIGR01242 26Sp45 26S proteasom 98.3 9.5E-06 2.1E-10 95.0 14.5 174 189-389 120-328 (364)
72 PRK07471 DNA polymerase III su 98.3 8.9E-05 1.9E-09 85.8 22.2 201 187-396 15-239 (365)
73 PF05496 RuvB_N: Holliday junc 98.3 1.8E-05 4E-10 82.7 14.8 178 188-398 21-224 (233)
74 PRK07003 DNA polymerase III su 98.2 7.6E-05 1.6E-09 91.0 21.6 195 189-395 14-221 (830)
75 COG1474 CDC6 Cdc6-related prot 98.2 0.00015 3.4E-09 83.7 22.8 281 188-483 14-334 (366)
76 PRK14960 DNA polymerase III su 98.2 5.5E-05 1.2E-09 91.3 19.5 191 189-391 13-215 (702)
77 PRK08727 hypothetical protein; 98.2 3.5E-05 7.7E-10 84.0 16.7 169 190-392 18-201 (233)
78 PRK14956 DNA polymerase III su 98.2 7.6E-05 1.7E-09 87.7 19.8 191 189-390 16-217 (484)
79 PRK08903 DnaA regulatory inact 98.2 3.3E-05 7.2E-10 84.2 16.0 174 189-399 16-203 (227)
80 PRK14949 DNA polymerase III su 98.2 0.00013 2.8E-09 90.7 22.3 197 189-395 14-221 (944)
81 PRK05642 DNA replication initi 98.2 8.3E-05 1.8E-09 81.1 18.4 150 214-395 45-208 (234)
82 PF13401 AAA_22: AAA domain; P 98.2 8.1E-06 1.7E-10 80.6 9.6 114 213-333 3-125 (131)
83 cd00009 AAA The AAA+ (ATPases 98.2 1.8E-05 3.9E-10 79.4 12.3 123 194-335 1-131 (151)
84 PRK05564 DNA polymerase III su 98.2 5.7E-05 1.2E-09 86.6 17.5 178 191-395 4-190 (313)
85 PRK14962 DNA polymerase III su 98.1 0.00026 5.5E-09 84.8 23.1 183 189-397 12-221 (472)
86 PRK13341 recombination factor 98.1 0.00011 2.4E-09 92.0 20.4 170 189-390 26-212 (725)
87 TIGR02397 dnaX_nterm DNA polym 98.1 0.00019 4E-09 84.3 21.6 182 189-396 12-219 (355)
88 KOG2120 SCF ubiquitin ligase, 98.1 5.3E-08 1.1E-12 102.8 -7.9 174 699-909 186-374 (419)
89 PF14516 AAA_35: AAA-like doma 98.1 0.00078 1.7E-08 77.6 25.3 205 188-402 8-246 (331)
90 PRK08691 DNA polymerase III su 98.1 0.0001 2.2E-09 89.8 18.7 192 189-392 14-217 (709)
91 KOG2120 SCF ubiquitin ligase, 98.1 5.2E-08 1.1E-12 102.8 -8.2 179 723-930 186-374 (419)
92 PRK09087 hypothetical protein; 98.1 0.0001 2.2E-09 79.8 16.7 138 214-394 44-194 (226)
93 PRK12323 DNA polymerase III su 98.0 7.7E-05 1.7E-09 89.8 16.1 197 189-392 14-222 (700)
94 PRK09112 DNA polymerase III su 98.0 8.3E-05 1.8E-09 85.6 15.8 196 187-395 19-240 (351)
95 PRK08084 DNA replication initi 98.0 0.00014 3E-09 79.5 16.7 148 213-394 44-208 (235)
96 PRK14957 DNA polymerase III su 98.0 6.4E-05 1.4E-09 90.7 15.2 181 189-395 14-221 (546)
97 PRK14964 DNA polymerase III su 98.0 0.00059 1.3E-08 81.3 23.0 177 189-391 11-213 (491)
98 COG2255 RuvB Holliday junction 98.0 0.00014 3.1E-09 77.5 15.3 263 189-489 24-317 (332)
99 PRK07940 DNA polymerase III su 98.0 0.00011 2.4E-09 85.7 16.0 185 191-395 5-213 (394)
100 PRK07994 DNA polymerase III su 98.0 0.00012 2.6E-09 89.7 16.7 191 189-391 14-216 (647)
101 PF00308 Bac_DnaA: Bacterial d 98.0 0.00019 4.1E-09 77.4 16.5 180 191-393 8-206 (219)
102 KOG2028 ATPase related to the 98.0 5.8E-05 1.3E-09 82.3 12.2 146 191-363 138-293 (554)
103 PLN03150 hypothetical protein; 98.0 1.1E-05 2.3E-10 101.0 7.6 83 653-735 420-503 (623)
104 PLN03150 hypothetical protein; 98.0 1.1E-05 2.4E-10 100.8 7.7 106 676-781 419-527 (623)
105 PF08937 DUF1863: MTH538 TIR-l 98.0 1.2E-05 2.6E-10 79.0 6.3 89 14-109 1-106 (130)
106 PRK05896 DNA polymerase III su 98.0 0.00024 5.3E-09 85.8 18.4 196 189-396 14-222 (605)
107 KOG0531 Protein phosphatase 1, 98.0 1.8E-06 3.8E-11 103.1 0.3 56 604-660 71-127 (414)
108 PRK14958 DNA polymerase III su 98.0 0.00052 1.1E-08 83.0 21.4 178 189-392 14-217 (509)
109 TIGR00678 holB DNA polymerase 97.9 0.00025 5.4E-09 74.8 16.3 88 295-390 95-186 (188)
110 PRK06645 DNA polymerase III su 97.9 0.00026 5.5E-09 85.1 18.1 188 189-391 19-225 (507)
111 PRK14087 dnaA chromosomal repl 97.9 0.0002 4.3E-09 85.6 16.5 163 215-396 142-320 (450)
112 PRK03992 proteasome-activating 97.9 8.3E-05 1.8E-09 87.5 13.2 171 190-388 130-336 (389)
113 PRK14951 DNA polymerase III su 97.9 0.00094 2E-08 81.9 22.5 189 189-392 14-222 (618)
114 PRK14955 DNA polymerase III su 97.9 0.00028 6E-09 83.5 17.5 196 189-391 14-224 (397)
115 PF13855 LRR_8: Leucine rich r 97.9 1.1E-05 2.4E-10 67.7 3.5 58 850-909 1-60 (61)
116 PRK14970 DNA polymerase III su 97.9 0.00095 2.1E-08 78.5 21.2 179 189-391 15-205 (367)
117 KOG1909 Ran GTPase-activating 97.8 3.6E-06 7.9E-11 91.7 0.1 61 848-908 183-251 (382)
118 TIGR02881 spore_V_K stage V sp 97.8 0.00024 5.2E-09 79.1 14.6 155 191-366 6-193 (261)
119 PRK14954 DNA polymerase III su 97.8 0.0007 1.5E-08 83.3 19.7 195 189-390 14-223 (620)
120 PRK09111 DNA polymerase III su 97.8 0.00046 9.9E-09 84.8 17.9 195 189-393 22-231 (598)
121 PRK14952 DNA polymerase III su 97.8 0.0023 5E-08 78.3 23.6 197 189-397 11-222 (584)
122 KOG0531 Protein phosphatase 1, 97.8 4.1E-06 8.9E-11 100.0 -0.6 168 718-907 91-264 (414)
123 PRK14969 DNA polymerase III su 97.8 0.00042 9.1E-09 84.4 16.7 194 189-395 14-221 (527)
124 KOG1859 Leucine-rich repeat pr 97.8 1.5E-06 3.3E-11 101.9 -4.1 130 603-735 162-292 (1096)
125 PRK14959 DNA polymerase III su 97.8 0.002 4.4E-08 78.5 22.0 199 189-399 14-225 (624)
126 TIGR03689 pup_AAA proteasome A 97.8 0.00062 1.3E-08 81.5 17.1 160 190-364 181-378 (512)
127 PHA02544 44 clamp loader, smal 97.8 0.00031 6.6E-09 80.9 14.2 149 188-362 18-171 (316)
128 PRK14950 DNA polymerase III su 97.7 0.00069 1.5E-08 84.1 18.0 194 189-394 14-220 (585)
129 PF13855 LRR_8: Leucine rich r 97.7 2.7E-05 5.9E-10 65.3 3.9 58 723-780 2-60 (61)
130 PRK07133 DNA polymerase III su 97.7 0.00054 1.2E-08 84.6 16.5 193 189-395 16-220 (725)
131 TIGR02639 ClpA ATP-dependent C 97.7 0.00034 7.3E-09 89.4 15.3 152 190-364 181-358 (731)
132 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00037 8E-09 89.6 15.4 177 190-388 186-389 (852)
133 TIGR02880 cbbX_cfxQ probable R 97.7 0.00084 1.8E-08 75.4 16.3 154 192-366 23-210 (284)
134 PRK07764 DNA polymerase III su 97.7 0.0026 5.6E-08 81.0 22.2 188 189-391 13-217 (824)
135 PRK08451 DNA polymerase III su 97.7 0.0028 6E-08 76.4 20.8 193 189-392 12-215 (535)
136 PRK14953 DNA polymerase III su 97.7 0.0072 1.6E-07 72.9 24.4 191 189-393 14-218 (486)
137 PRK14088 dnaA chromosomal repl 97.7 0.0015 3.2E-08 78.2 18.4 157 214-392 130-302 (440)
138 PF05673 DUF815: Protein of un 97.7 0.0017 3.8E-08 69.1 16.6 54 188-241 24-79 (249)
139 KOG0989 Replication factor C, 97.6 0.0042 9.1E-08 67.3 19.3 190 188-396 33-232 (346)
140 PRK14971 DNA polymerase III su 97.6 0.0046 1E-07 76.6 22.8 191 189-390 15-217 (614)
141 PRK06305 DNA polymerase III su 97.6 0.0015 3.2E-08 78.2 17.9 198 189-395 15-223 (451)
142 TIGR00362 DnaA chromosomal rep 97.6 0.0014 3.1E-08 78.1 17.3 157 214-393 136-308 (405)
143 PTZ00454 26S protease regulato 97.6 0.00095 2.1E-08 78.2 15.4 174 189-389 143-351 (398)
144 PRK06620 hypothetical protein; 97.6 0.00037 7.9E-09 74.8 10.9 132 215-391 45-185 (214)
145 PTZ00361 26 proteosome regulat 97.6 0.00038 8.2E-09 82.1 11.5 154 190-366 182-369 (438)
146 PRK09376 rho transcription ter 97.6 0.00012 2.7E-09 83.0 7.1 95 214-310 169-270 (416)
147 TIGR02903 spore_lon_C ATP-depe 97.6 0.00087 1.9E-08 83.3 15.2 48 189-238 152-199 (615)
148 PRK00149 dnaA chromosomal repl 97.6 0.0014 3.1E-08 79.0 16.7 156 214-392 148-319 (450)
149 KOG1859 Leucine-rich repeat pr 97.6 4.4E-06 9.6E-11 98.2 -4.7 170 738-930 102-290 (1096)
150 PRK06647 DNA polymerase III su 97.5 0.0065 1.4E-07 74.4 21.9 192 189-392 14-217 (563)
151 CHL00095 clpC Clp protease ATP 97.5 0.00079 1.7E-08 87.1 14.5 151 191-363 179-353 (821)
152 PRK14948 DNA polymerase III su 97.5 0.0094 2E-07 73.9 23.2 190 189-393 14-220 (620)
153 KOG2982 Uncharacterized conser 97.5 2.9E-05 6.4E-10 82.5 1.1 67 849-915 198-266 (418)
154 CHL00181 cbbX CbbX; Provisiona 97.5 0.004 8.6E-08 70.0 18.1 132 215-367 60-212 (287)
155 CHL00176 ftsH cell division pr 97.5 0.0021 4.5E-08 79.7 16.8 172 190-387 182-386 (638)
156 PRK07399 DNA polymerase III su 97.5 0.0043 9.4E-08 70.5 18.1 193 191-395 4-221 (314)
157 cd01128 rho_factor Transcripti 97.5 9.8E-05 2.1E-09 80.6 4.6 94 214-309 16-116 (249)
158 COG3267 ExeA Type II secretory 97.5 0.0034 7.5E-08 66.6 15.6 196 193-397 30-247 (269)
159 PF08357 SEFIR: SEFIR domain; 97.5 0.00013 2.9E-09 73.8 5.2 64 16-79 3-70 (150)
160 PRK10865 protein disaggregatio 97.5 0.0018 3.8E-08 83.7 16.3 153 190-364 177-354 (857)
161 PRK12422 chromosomal replicati 97.4 0.0024 5.1E-08 76.2 15.5 151 215-388 142-306 (445)
162 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0013 2.8E-08 85.4 14.2 154 190-364 172-349 (852)
163 PRK14086 dnaA chromosomal repl 97.4 0.0044 9.6E-08 75.2 17.5 153 215-390 315-483 (617)
164 KOG2543 Origin recognition com 97.4 0.0049 1.1E-07 68.7 16.2 167 190-363 5-192 (438)
165 COG1222 RPT1 ATP-dependent 26S 97.4 0.0017 3.6E-08 71.8 12.6 173 191-391 151-359 (406)
166 PRK05563 DNA polymerase III su 97.4 0.0068 1.5E-07 74.6 19.5 187 189-391 14-216 (559)
167 PRK05707 DNA polymerase III su 97.4 0.0057 1.2E-07 70.0 17.6 94 296-395 106-203 (328)
168 KOG2982 Uncharacterized conser 97.4 8E-05 1.7E-09 79.3 2.0 41 848-888 222-262 (418)
169 PRK14965 DNA polymerase III su 97.3 0.012 2.5E-07 72.9 20.6 192 189-395 14-221 (576)
170 PF12799 LRR_4: Leucine Rich r 97.3 0.00021 4.5E-09 55.2 3.3 33 876-908 2-34 (44)
171 COG1373 Predicted ATPase (AAA+ 97.3 0.0021 4.6E-08 75.6 13.3 147 216-394 39-191 (398)
172 PF00004 AAA: ATPase family as 97.3 0.0015 3.3E-08 64.2 10.4 23 217-239 1-23 (132)
173 TIGR01241 FtsH_fam ATP-depende 97.3 0.004 8.6E-08 76.2 15.7 175 189-389 53-260 (495)
174 PF10443 RNA12: RNA12 protein; 97.3 0.051 1.1E-06 62.7 23.1 102 296-401 148-284 (431)
175 PRK11034 clpA ATP-dependent Cl 97.3 0.002 4.3E-08 81.3 13.0 153 191-364 186-362 (758)
176 PF12799 LRR_4: Leucine Rich r 97.2 0.00029 6.2E-09 54.4 3.1 40 850-891 1-40 (44)
177 PRK08116 hypothetical protein; 97.2 0.0025 5.5E-08 70.9 11.7 102 215-334 115-221 (268)
178 TIGR00767 rho transcription te 97.2 0.00081 1.7E-08 77.0 7.8 95 214-310 168-269 (415)
179 KOG2227 Pre-initiation complex 97.2 0.0072 1.6E-07 69.2 15.1 203 188-395 147-372 (529)
180 COG0593 DnaA ATPase involved i 97.1 0.0039 8.5E-08 72.0 12.6 136 213-368 112-261 (408)
181 KOG0991 Replication factor C, 97.1 0.0068 1.5E-07 62.8 12.8 49 189-239 25-73 (333)
182 PRK12377 putative replication 97.1 0.012 2.6E-07 64.3 15.6 37 213-249 100-136 (248)
183 KOG3665 ZYG-1-like serine/thre 97.1 0.00015 3.2E-09 90.5 0.9 108 675-783 122-234 (699)
184 PF05621 TniB: Bacterial TniB 97.1 0.0087 1.9E-07 66.0 14.4 195 191-393 34-259 (302)
185 TIGR00602 rad24 checkpoint pro 97.1 0.0031 6.6E-08 77.6 11.7 52 188-239 81-135 (637)
186 smart00382 AAA ATPases associa 97.0 0.0019 4.2E-08 63.8 7.7 28 215-242 3-30 (148)
187 PLN00020 ribulose bisphosphate 96.9 0.023 5E-07 64.2 16.1 151 212-390 146-333 (413)
188 PRK08181 transposase; Validate 96.9 0.0028 6.2E-08 70.0 9.0 36 214-249 106-141 (269)
189 PRK08769 DNA polymerase III su 96.9 0.075 1.6E-06 60.4 20.2 94 295-396 112-209 (319)
190 PRK06090 DNA polymerase III su 96.8 0.041 8.9E-07 62.4 17.4 91 295-395 107-201 (319)
191 PRK10536 hypothetical protein; 96.8 0.0071 1.5E-07 65.4 10.7 139 190-335 54-214 (262)
192 PRK09183 transposase/IS protei 96.8 0.0037 8E-08 69.2 8.8 35 214-248 102-136 (259)
193 TIGR01243 CDC48 AAA family ATP 96.8 0.015 3.4E-07 74.6 15.8 172 191-389 453-657 (733)
194 TIGR03346 chaperone_ClpB ATP-d 96.8 0.11 2.3E-06 67.8 23.5 51 190-240 564-621 (852)
195 PRK08058 DNA polymerase III su 96.8 0.018 4E-07 66.2 14.7 158 192-363 6-181 (329)
196 TIGR02639 ClpA ATP-dependent C 96.8 0.11 2.5E-06 66.5 23.2 50 190-239 453-509 (731)
197 COG0542 clpA ATP-binding subun 96.8 0.011 2.3E-07 73.3 13.2 119 190-319 490-618 (786)
198 CHL00195 ycf46 Ycf46; Provisio 96.8 0.014 3E-07 70.2 13.6 176 190-389 227-429 (489)
199 COG2607 Predicted ATPase (AAA+ 96.7 0.013 2.9E-07 61.3 11.1 123 188-338 57-188 (287)
200 TIGR01243 CDC48 AAA family ATP 96.7 0.012 2.6E-07 75.6 13.5 174 190-389 177-381 (733)
201 PRK07952 DNA replication prote 96.7 0.033 7.2E-07 60.7 14.7 36 214-249 99-134 (244)
202 PRK06871 DNA polymerase III su 96.7 0.053 1.1E-06 61.7 16.6 172 200-392 11-200 (325)
203 PRK06526 transposase; Provisio 96.7 0.0045 9.7E-08 68.1 7.8 28 214-241 98-125 (254)
204 PRK10865 protein disaggregatio 96.6 0.058 1.3E-06 70.0 19.0 51 190-240 567-624 (857)
205 PRK07993 DNA polymerase III su 96.6 0.041 9E-07 63.2 15.5 178 199-393 10-202 (334)
206 TIGR03345 VI_ClpV1 type VI sec 96.6 0.023 5E-07 73.4 14.9 51 190-240 565-622 (852)
207 PRK09361 radB DNA repair and r 96.5 0.0078 1.7E-07 65.5 8.8 48 202-249 11-58 (225)
208 PRK11331 5-methylcytosine-spec 96.5 0.0077 1.7E-07 70.3 8.9 56 190-249 174-231 (459)
209 TIGR02640 gas_vesic_GvpN gas v 96.5 0.05 1.1E-06 60.5 14.9 25 215-239 22-46 (262)
210 KOG1644 U2-associated snRNP A' 96.5 0.0039 8.5E-08 63.6 5.2 78 605-684 42-122 (233)
211 PRK06835 DNA replication prote 96.5 0.0066 1.4E-07 69.3 7.8 35 215-249 184-218 (329)
212 KOG1947 Leucine rich repeat pr 96.5 0.00033 7.2E-09 85.8 -3.0 35 900-934 403-442 (482)
213 PRK06921 hypothetical protein; 96.4 0.0062 1.3E-07 67.6 7.1 37 213-249 116-153 (266)
214 PRK11034 clpA ATP-dependent Cl 96.4 0.071 1.5E-06 67.6 17.2 50 190-239 457-513 (758)
215 COG2812 DnaX DNA polymerase II 96.4 0.059 1.3E-06 64.4 15.3 181 190-388 15-213 (515)
216 CHL00095 clpC Clp protease ATP 96.4 0.055 1.2E-06 70.2 16.3 50 190-239 508-564 (821)
217 KOG3665 ZYG-1-like serine/thre 96.4 0.0016 3.5E-08 81.4 2.2 150 744-908 121-285 (699)
218 KOG0730 AAA+-type ATPase [Post 96.3 0.017 3.6E-07 69.0 10.3 172 192-389 435-637 (693)
219 KOG0733 Nuclear AAA ATPase (VC 96.3 0.031 6.6E-07 65.9 12.1 154 190-366 189-376 (802)
220 KOG0731 AAA+-type ATPase conta 96.3 0.1 2.2E-06 64.6 17.2 177 189-391 309-520 (774)
221 PF01695 IstB_IS21: IstB-like 96.3 0.0078 1.7E-07 62.5 6.7 36 214-249 47-82 (178)
222 TIGR00763 lon ATP-dependent pr 96.3 0.096 2.1E-06 67.6 18.1 52 191-242 320-375 (775)
223 COG1223 Predicted ATPase (AAA+ 96.3 0.061 1.3E-06 56.9 12.9 172 190-388 120-318 (368)
224 PRK00771 signal recognition pa 96.3 0.079 1.7E-06 62.8 15.7 29 213-241 94-122 (437)
225 PRK06964 DNA polymerase III su 96.3 0.21 4.7E-06 57.2 18.8 91 295-395 131-225 (342)
226 PRK04296 thymidine kinase; Pro 96.3 0.0094 2E-07 62.8 7.3 111 215-335 3-117 (190)
227 KOG4579 Leucine-rich repeat (L 96.3 0.00031 6.8E-09 66.7 -3.4 81 673-755 51-133 (177)
228 KOG2228 Origin recognition com 96.2 0.044 9.6E-07 60.3 12.0 174 189-364 22-219 (408)
229 KOG0735 AAA+-type ATPase [Post 96.2 0.051 1.1E-06 65.2 13.3 160 214-395 431-616 (952)
230 cd01120 RecA-like_NTPases RecA 96.2 0.012 2.7E-07 59.9 7.6 34 216-249 1-34 (165)
231 KOG0744 AAA+-type ATPase [Post 96.2 0.024 5.2E-07 61.8 9.7 80 214-308 177-262 (423)
232 PF02562 PhoH: PhoH-like prote 96.2 0.0062 1.4E-07 64.1 5.2 123 196-334 5-156 (205)
233 PRK04132 replication factor C 96.2 0.17 3.6E-06 64.5 18.6 149 222-391 574-727 (846)
234 cd01394 radB RadB. The archaea 96.2 0.011 2.4E-07 63.9 7.3 49 201-249 6-54 (218)
235 PRK10787 DNA-binding ATP-depen 96.2 0.12 2.6E-06 66.1 17.6 53 190-242 321-377 (784)
236 KOG0741 AAA+-type ATPase [Post 96.2 0.1 2.2E-06 60.7 14.8 126 212-363 536-685 (744)
237 KOG1514 Origin recognition com 96.2 0.17 3.6E-06 61.3 17.1 204 188-398 393-624 (767)
238 PF13177 DNA_pol3_delta2: DNA 96.1 0.091 2E-06 53.8 13.2 132 195-351 1-161 (162)
239 PRK12608 transcription termina 96.1 0.022 4.8E-07 65.1 9.3 104 203-309 123-233 (380)
240 cd01133 F1-ATPase_beta F1 ATP 96.1 0.014 3.1E-07 64.1 7.6 94 214-309 69-176 (274)
241 KOG2004 Mitochondrial ATP-depe 96.1 0.019 4.1E-07 68.9 9.0 53 190-242 410-466 (906)
242 PF04665 Pox_A32: Poxvirus A32 96.1 0.0085 1.8E-07 64.5 5.7 34 216-249 15-48 (241)
243 PF07693 KAP_NTPase: KAP famil 96.1 0.18 3.9E-06 58.2 17.3 45 197-241 2-47 (325)
244 PRK08699 DNA polymerase III su 96.1 0.24 5.3E-06 56.7 17.8 86 296-391 113-202 (325)
245 COG0470 HolB ATPase involved i 96.1 0.049 1.1E-06 62.8 12.6 144 192-356 2-173 (325)
246 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0074 1.6E-07 68.6 5.3 49 192-240 52-104 (361)
247 TIGR02237 recomb_radB DNA repa 96.0 0.015 3.3E-07 62.4 7.5 44 206-249 4-47 (209)
248 PRK10733 hflB ATP-dependent me 96.0 0.065 1.4E-06 67.4 14.2 153 191-366 152-337 (644)
249 KOG0728 26S proteasome regulat 96.0 0.16 3.4E-06 53.4 13.9 146 192-364 147-331 (404)
250 COG0466 Lon ATP-dependent Lon 96.0 0.0077 1.7E-07 72.5 5.2 159 190-364 322-508 (782)
251 KOG0734 AAA+-type ATPase conta 96.0 0.033 7.2E-07 64.5 9.8 147 191-364 304-484 (752)
252 PF13207 AAA_17: AAA domain; P 96.0 0.0062 1.4E-07 58.9 3.7 23 216-238 1-23 (121)
253 PF07728 AAA_5: AAA domain (dy 96.0 0.01 2.2E-07 59.1 5.3 22 217-238 2-23 (139)
254 KOG2035 Replication factor C, 96.0 0.2 4.3E-06 53.9 14.8 226 191-433 13-282 (351)
255 PRK05541 adenylylsulfate kinas 95.9 0.019 4.2E-07 59.7 7.5 37 213-249 6-42 (176)
256 PRK08118 topology modulation p 95.9 0.0057 1.2E-07 62.9 3.4 24 216-239 3-26 (167)
257 KOG2739 Leucine-rich acidic nu 95.9 0.0051 1.1E-07 65.5 2.8 87 846-933 61-157 (260)
258 cd01131 PilT Pilus retraction 95.9 0.028 6.1E-07 59.7 8.4 110 215-337 2-112 (198)
259 PF14532 Sigma54_activ_2: Sigm 95.8 0.017 3.6E-07 57.5 6.2 44 194-237 1-44 (138)
260 cd01393 recA_like RecA is a b 95.8 0.031 6.7E-07 60.8 8.9 48 202-249 7-60 (226)
261 KOG1947 Leucine rich repeat pr 95.8 0.001 2.3E-08 81.4 -3.1 36 877-912 403-441 (482)
262 COG5238 RNA1 Ran GTPase-activa 95.7 0.0024 5.2E-08 67.6 -0.4 19 765-783 88-106 (388)
263 KOG4579 Leucine-rich repeat (L 95.7 0.0014 3E-08 62.5 -2.1 84 584-668 54-139 (177)
264 PF00448 SRP54: SRP54-type pro 95.7 0.018 3.9E-07 60.8 5.9 35 214-248 1-35 (196)
265 COG1618 Predicted nucleotide k 95.7 0.011 2.5E-07 58.1 4.0 39 215-253 6-46 (179)
266 PRK06696 uridine kinase; Valid 95.7 0.02 4.3E-07 62.1 6.4 46 196-241 3-49 (223)
267 KOG1644 U2-associated snRNP A' 95.7 0.019 4.1E-07 58.8 5.6 107 578-684 37-149 (233)
268 COG1066 Sms Predicted ATP-depe 95.6 0.059 1.3E-06 61.2 10.0 99 200-307 79-179 (456)
269 KOG0733 Nuclear AAA ATPase (VC 95.6 0.12 2.5E-06 61.3 12.5 129 214-365 545-693 (802)
270 cd01121 Sms Sms (bacterial rad 95.6 0.046 9.9E-07 63.6 9.5 49 201-249 69-117 (372)
271 TIGR02974 phageshock_pspF psp 95.6 0.26 5.7E-06 56.7 15.7 45 193-237 1-45 (329)
272 COG5238 RNA1 Ran GTPase-activa 95.6 0.0009 1.9E-08 70.7 -4.0 34 604-637 29-67 (388)
273 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.073 1.6E-06 53.7 9.6 115 215-334 3-138 (159)
274 COG0542 clpA ATP-binding subun 95.6 0.1 2.3E-06 64.9 12.8 153 191-364 170-346 (786)
275 TIGR00064 ftsY signal recognit 95.6 0.11 2.4E-06 57.9 12.1 30 212-241 70-99 (272)
276 PRK11608 pspF phage shock prot 95.6 0.35 7.5E-06 55.7 16.5 46 191-236 6-51 (326)
277 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.031 6.6E-07 61.3 7.6 48 202-249 7-60 (235)
278 TIGR01817 nifA Nif-specific re 95.5 0.24 5.2E-06 61.3 16.2 50 189-238 194-243 (534)
279 PRK07667 uridine kinase; Provi 95.5 0.028 6E-07 59.5 6.7 42 200-241 3-44 (193)
280 PRK08939 primosomal protein Dn 95.5 0.09 2E-06 59.6 11.1 37 213-249 155-191 (306)
281 TIGR00959 ffh signal recogniti 95.5 0.3 6.5E-06 57.8 15.7 27 213-239 98-124 (428)
282 PF10137 TIR-like: Predicted n 95.5 0.031 6.7E-07 53.8 6.2 60 16-78 2-61 (125)
283 TIGR02902 spore_lonB ATP-depen 95.5 0.16 3.5E-06 62.4 14.0 47 190-238 64-110 (531)
284 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.073 1.6E-06 58.3 10.1 49 201-249 8-56 (237)
285 PRK06067 flagellar accessory p 95.5 0.063 1.4E-06 58.8 9.5 49 201-249 12-60 (234)
286 KOG2739 Leucine-rich acidic nu 95.4 0.0094 2E-07 63.5 2.8 66 646-711 60-129 (260)
287 PHA00729 NTP-binding motif con 95.4 0.042 9.2E-07 58.6 7.4 27 213-239 16-42 (226)
288 PRK06762 hypothetical protein; 95.4 0.065 1.4E-06 55.1 8.7 25 214-238 2-26 (166)
289 cd00544 CobU Adenosylcobinamid 95.3 0.053 1.1E-06 55.7 7.8 80 217-306 2-83 (169)
290 COG0464 SpoVK ATPases of the A 95.3 0.13 2.8E-06 63.1 12.7 155 191-368 242-427 (494)
291 TIGR02012 tigrfam_recA protein 95.3 0.038 8.3E-07 62.5 7.1 49 201-249 41-90 (321)
292 PF13604 AAA_30: AAA domain; P 95.2 0.12 2.6E-06 54.8 10.4 39 200-241 7-45 (196)
293 PRK05022 anaerobic nitric oxid 95.2 0.52 1.1E-05 57.9 17.4 50 189-238 185-234 (509)
294 cd00983 recA RecA is a bacter 95.2 0.045 9.8E-07 61.9 7.3 49 201-249 41-90 (325)
295 PRK10416 signal recognition pa 95.2 0.21 4.5E-06 57.0 12.7 29 213-241 113-141 (318)
296 PRK11889 flhF flagellar biosyn 95.1 0.21 4.5E-06 57.5 12.2 29 213-241 240-268 (436)
297 PRK09354 recA recombinase A; P 95.1 0.052 1.1E-06 61.9 7.5 49 201-249 46-95 (349)
298 PRK05800 cobU adenosylcobinami 95.0 0.031 6.8E-07 57.5 5.2 81 216-306 3-86 (170)
299 PTZ00494 tuzin-like protein; P 95.0 2.1 4.6E-05 49.5 19.6 163 187-364 367-544 (664)
300 cd03228 ABCC_MRP_Like The MRP 95.0 0.074 1.6E-06 55.0 8.0 127 213-348 27-167 (171)
301 PF01583 APS_kinase: Adenylyls 95.0 0.02 4.3E-07 57.5 3.5 36 214-249 2-37 (156)
302 PRK14974 cell division protein 95.0 0.51 1.1E-05 54.0 15.2 29 213-241 139-167 (336)
303 PRK15429 formate hydrogenlyase 95.0 0.49 1.1E-05 60.5 16.8 49 190-238 375-423 (686)
304 PRK10867 signal recognition pa 95.0 0.61 1.3E-05 55.3 16.2 29 213-241 99-127 (433)
305 PRK12723 flagellar biosynthesi 95.0 0.21 4.5E-06 58.4 12.1 27 213-239 173-199 (388)
306 KOG0743 AAA+-type ATPase [Post 94.9 0.36 7.9E-06 55.8 13.6 152 215-402 236-417 (457)
307 TIGR01425 SRP54_euk signal rec 94.9 0.74 1.6E-05 54.3 16.7 29 213-241 99-127 (429)
308 COG1484 DnaC DNA replication p 94.9 0.13 2.8E-06 56.7 9.8 37 213-249 104-140 (254)
309 PF13671 AAA_33: AAA domain; P 94.9 0.1 2.2E-06 52.0 8.4 24 216-239 1-24 (143)
310 COG0572 Udk Uridine kinase [Nu 94.9 0.049 1.1E-06 57.4 6.0 30 212-241 6-35 (218)
311 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.08 1.7E-06 53.0 7.4 102 213-339 25-132 (144)
312 KOG1969 DNA replication checkp 94.8 0.068 1.5E-06 64.6 7.8 76 212-308 324-399 (877)
313 PRK15455 PrkA family serine pr 94.8 0.033 7.1E-07 66.6 5.2 52 190-241 75-130 (644)
314 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.28 6.2E-06 49.8 11.6 42 195-236 82-124 (157)
315 PRK04328 hypothetical protein; 94.8 0.14 3E-06 56.5 9.9 48 202-249 11-58 (249)
316 cd01129 PulE-GspE PulE/GspE Th 94.8 0.1 2.3E-06 57.9 8.8 102 199-316 68-169 (264)
317 cd02027 APSK Adenosine 5'-phos 94.7 0.15 3.3E-06 51.4 9.0 24 216-239 1-24 (149)
318 PF10236 DAP3: Mitochondrial r 94.7 0.88 1.9E-05 51.8 16.2 48 345-392 258-306 (309)
319 PRK11823 DNA repair protein Ra 94.6 0.12 2.6E-06 61.9 9.5 49 201-249 67-115 (446)
320 PF13238 AAA_18: AAA domain; P 94.6 0.028 6.2E-07 54.8 3.5 22 217-238 1-22 (129)
321 cd03214 ABC_Iron-Siderophores_ 94.6 0.13 2.9E-06 53.6 8.7 121 213-339 24-163 (180)
322 TIGR03499 FlhF flagellar biosy 94.6 0.13 2.9E-06 57.7 9.2 29 213-241 193-221 (282)
323 TIGR00416 sms DNA repair prote 94.6 0.13 2.8E-06 61.8 9.4 50 200-249 80-129 (454)
324 TIGR02858 spore_III_AA stage I 94.6 0.13 2.7E-06 57.2 8.7 116 213-336 110-231 (270)
325 TIGR01420 pilT_fam pilus retra 94.5 0.092 2E-06 60.9 8.0 108 214-334 122-230 (343)
326 COG1875 NYN ribonuclease and A 94.5 0.17 3.7E-06 56.5 9.3 34 297-333 352-387 (436)
327 PF00485 PRK: Phosphoribulokin 94.4 0.036 7.9E-07 58.7 3.9 26 216-241 1-26 (194)
328 PF03215 Rad17: Rad17 cell cyc 94.4 0.22 4.8E-06 60.4 10.9 56 191-248 19-77 (519)
329 KOG0729 26S proteasome regulat 94.4 0.12 2.6E-06 54.7 7.4 53 192-249 178-241 (435)
330 PRK13531 regulatory ATPase Rav 94.3 0.054 1.2E-06 64.1 5.4 47 190-240 19-65 (498)
331 PRK09270 nucleoside triphospha 94.3 0.064 1.4E-06 58.5 5.7 31 211-241 30-60 (229)
332 cd03223 ABCD_peroxisomal_ALDP 94.3 0.1 2.2E-06 53.7 6.9 124 213-348 26-160 (166)
333 cd03247 ABCC_cytochrome_bd The 94.3 0.18 3.8E-06 52.6 8.8 123 213-348 27-169 (178)
334 PRK04301 radA DNA repair and r 94.3 0.13 2.8E-06 59.1 8.4 49 201-249 89-143 (317)
335 PRK07261 topology modulation p 94.3 0.031 6.8E-07 57.8 3.1 23 216-238 2-24 (171)
336 PF08423 Rad51: Rad51; InterP 94.2 0.068 1.5E-06 59.1 5.6 38 201-238 25-62 (256)
337 COG0468 RecA RecA/RadA recombi 94.2 0.2 4.2E-06 55.5 9.1 47 203-249 49-95 (279)
338 PRK00889 adenylylsulfate kinas 94.2 0.1 2.2E-06 54.2 6.7 28 213-240 3-30 (175)
339 PRK12724 flagellar biosynthesi 94.0 0.53 1.1E-05 55.0 12.5 25 214-238 223-247 (432)
340 COG4088 Predicted nucleotide k 94.0 0.12 2.6E-06 53.1 6.3 29 215-243 2-30 (261)
341 cd03216 ABC_Carb_Monos_I This 94.0 0.11 2.3E-06 53.3 6.3 117 213-339 25-147 (163)
342 PF07726 AAA_3: ATPase family 94.0 0.032 6.9E-07 53.5 2.1 28 217-244 2-29 (131)
343 COG4618 ArpD ABC-type protease 93.9 0.13 2.7E-06 60.0 7.1 21 215-235 363-383 (580)
344 PTZ00301 uridine kinase; Provi 93.9 0.052 1.1E-06 57.9 3.9 29 214-242 3-31 (210)
345 KOG0651 26S proteasome regulat 93.9 0.23 4.9E-06 54.3 8.5 30 213-242 165-194 (388)
346 cd01130 VirB11-like_ATPase Typ 93.9 0.085 1.8E-06 55.4 5.4 95 213-315 24-119 (186)
347 KOG0652 26S proteasome regulat 93.8 1.2 2.6E-05 47.3 13.4 163 191-380 171-372 (424)
348 TIGR00150 HI0065_YjeE ATPase, 93.8 0.092 2E-06 51.3 5.0 41 198-238 6-46 (133)
349 PRK12727 flagellar biosynthesi 93.8 0.39 8.3E-06 57.6 11.1 29 213-241 349-377 (559)
350 COG4608 AppF ABC-type oligopep 93.8 0.17 3.8E-06 54.9 7.5 125 213-340 38-176 (268)
351 PRK07132 DNA polymerase III su 93.8 6.5 0.00014 44.4 20.4 166 201-395 6-185 (299)
352 cd03246 ABCC_Protease_Secretio 93.8 0.15 3.2E-06 52.9 6.9 128 213-348 27-168 (173)
353 TIGR03574 selen_PSTK L-seryl-t 93.8 0.16 3.5E-06 56.1 7.6 26 216-241 1-26 (249)
354 CHL00206 ycf2 Ycf2; Provisiona 93.7 0.53 1.1E-05 63.6 13.0 27 212-238 1628-1654(2281)
355 PF08433 KTI12: Chromatin asso 93.7 0.14 3.1E-06 56.8 7.0 26 215-240 2-27 (270)
356 cd02019 NK Nucleoside/nucleoti 93.7 0.055 1.2E-06 46.5 2.9 23 216-238 1-23 (69)
357 COG0465 HflB ATP-dependent Zn 93.7 0.31 6.7E-06 59.2 10.2 176 190-391 149-357 (596)
358 cd03222 ABC_RNaseL_inhibitor T 93.7 0.2 4.3E-06 52.0 7.6 115 213-349 24-146 (177)
359 cd01122 GP4d_helicase GP4d_hel 93.7 0.5 1.1E-05 52.9 11.6 52 213-270 29-81 (271)
360 TIGR00708 cobA cob(I)alamin ad 93.7 0.58 1.3E-05 47.9 10.7 116 215-334 6-140 (173)
361 PF00437 T2SE: Type II/IV secr 93.7 0.19 4.1E-06 56.4 8.1 122 191-332 104-230 (270)
362 PRK05480 uridine/cytidine kina 93.7 0.062 1.3E-06 57.7 4.0 27 212-238 4-30 (209)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 93.6 0.59 1.3E-05 46.5 10.7 51 59-113 3-53 (141)
364 PRK08233 hypothetical protein; 93.6 0.055 1.2E-06 56.6 3.3 26 214-239 3-28 (182)
365 cd03230 ABC_DR_subfamily_A Thi 93.6 0.18 4E-06 52.2 7.2 128 213-348 25-168 (173)
366 PRK14722 flhF flagellar biosyn 93.6 0.47 1E-05 55.0 11.0 29 214-242 137-165 (374)
367 PF00910 RNA_helicase: RNA hel 93.5 0.047 1E-06 51.5 2.5 26 217-242 1-26 (107)
368 PRK15115 response regulator Gl 93.5 2.1 4.5E-05 51.8 17.4 48 191-238 134-181 (444)
369 COG0488 Uup ATPase components 93.5 0.6 1.3E-05 56.9 12.3 273 59-350 190-511 (530)
370 PRK03839 putative kinase; Prov 93.5 0.058 1.3E-06 56.4 3.3 24 216-239 2-25 (180)
371 PRK10923 glnG nitrogen regulat 93.5 0.92 2E-05 55.4 14.2 47 191-237 138-184 (469)
372 cd01125 repA Hexameric Replica 93.5 0.58 1.3E-05 51.3 11.3 24 216-239 3-26 (239)
373 PRK05986 cob(I)alamin adenolsy 93.4 0.35 7.5E-06 50.2 8.7 118 213-334 21-158 (191)
374 PRK08533 flagellar accessory p 93.4 0.26 5.6E-06 53.6 8.3 46 204-249 14-59 (230)
375 PRK12726 flagellar biosynthesi 93.4 0.61 1.3E-05 53.6 11.3 37 213-249 205-241 (407)
376 cd03238 ABC_UvrA The excision 93.4 0.25 5.5E-06 51.1 7.8 23 213-235 20-42 (176)
377 COG5635 Predicted NTPase (NACH 93.4 0.77 1.7E-05 59.9 14.0 223 215-446 223-481 (824)
378 PRK05703 flhF flagellar biosyn 93.3 0.67 1.4E-05 55.2 12.2 26 214-239 221-246 (424)
379 TIGR00390 hslU ATP-dependent p 93.3 0.13 2.9E-06 59.6 6.0 53 190-242 11-75 (441)
380 PRK11388 DNA-binding transcrip 93.2 1 2.2E-05 57.2 14.4 48 190-237 324-371 (638)
381 cd03115 SRP The signal recogni 93.1 0.55 1.2E-05 48.6 10.0 26 216-241 2-27 (173)
382 PRK00625 shikimate kinase; Pro 93.1 0.07 1.5E-06 55.1 3.2 24 216-239 2-25 (173)
383 TIGR00235 udk uridine kinase. 93.1 0.088 1.9E-06 56.4 4.0 28 212-239 4-31 (207)
384 PHA02244 ATPase-like protein 93.0 0.23 4.9E-06 56.9 7.3 52 189-240 94-145 (383)
385 cd01124 KaiC KaiC is a circadi 93.0 0.34 7.3E-06 50.8 8.3 33 217-249 2-34 (187)
386 COG2884 FtsE Predicted ATPase 93.0 0.27 5.7E-06 50.2 6.8 54 286-341 145-204 (223)
387 TIGR02788 VirB11 P-type DNA tr 93.0 0.24 5.2E-06 56.5 7.6 93 213-314 143-236 (308)
388 PF03308 ArgK: ArgK protein; 93.0 0.24 5.2E-06 53.5 7.0 42 200-241 15-56 (266)
389 PRK05973 replicative DNA helic 93.0 0.39 8.5E-06 52.0 8.7 38 212-249 62-99 (237)
390 COG2842 Uncharacterized ATPase 92.9 1.8 4E-05 47.6 13.6 124 183-318 64-189 (297)
391 PRK05201 hslU ATP-dependent pr 92.9 0.19 4.1E-06 58.4 6.4 52 190-241 14-77 (443)
392 PRK00131 aroK shikimate kinase 92.9 0.084 1.8E-06 54.6 3.4 26 214-239 4-29 (175)
393 COG2401 ABC-type ATPase fused 92.8 0.21 4.6E-06 56.5 6.5 60 287-346 516-580 (593)
394 PRK04040 adenylate kinase; Pro 92.8 0.095 2.1E-06 55.0 3.7 25 215-239 3-27 (188)
395 PRK10463 hydrogenase nickel in 92.8 0.36 7.8E-06 53.7 8.3 33 212-244 102-134 (290)
396 TIGR02236 recomb_radA DNA repa 92.8 0.36 7.8E-06 55.3 8.8 38 202-239 83-120 (310)
397 PRK10820 DNA-binding transcrip 92.8 0.48 1E-05 58.2 10.3 48 189-236 202-249 (520)
398 PF13481 AAA_25: AAA domain; P 92.8 0.51 1.1E-05 49.7 9.3 26 215-240 33-58 (193)
399 PRK09302 circadian clock prote 92.8 0.45 9.8E-06 58.5 10.1 50 200-249 17-67 (509)
400 TIGR02655 circ_KaiC circadian 92.8 0.31 6.7E-06 59.4 8.5 50 200-249 249-298 (484)
401 PTZ00088 adenylate kinase 1; P 92.8 0.3 6.5E-06 52.9 7.5 22 217-238 9-30 (229)
402 TIGR01360 aden_kin_iso1 adenyl 92.7 0.093 2E-06 55.1 3.5 26 213-238 2-27 (188)
403 COG1121 ZnuC ABC-type Mn/Zn tr 92.7 0.27 5.9E-06 53.3 7.0 51 287-339 148-204 (254)
404 cd02021 GntK Gluconate kinase 92.7 0.62 1.3E-05 46.9 9.4 23 216-238 1-23 (150)
405 PF00158 Sigma54_activat: Sigm 92.7 0.15 3.3E-06 52.4 4.8 44 193-236 1-44 (168)
406 PF00560 LRR_1: Leucine Rich R 92.6 0.048 1E-06 35.1 0.7 19 877-895 2-20 (22)
407 cd03233 ABC_PDR_domain1 The pl 92.6 0.4 8.7E-06 51.1 8.2 27 213-239 32-58 (202)
408 PRK08356 hypothetical protein; 92.6 0.27 5.9E-06 52.1 6.9 22 214-235 5-26 (195)
409 COG0563 Adk Adenylate kinase a 92.6 0.23 4.9E-06 51.5 6.1 23 216-238 2-24 (178)
410 TIGR02238 recomb_DMC1 meiotic 92.6 0.32 6.9E-06 55.4 7.8 36 201-236 83-118 (313)
411 KOG0736 Peroxisome assembly fa 92.5 1 2.3E-05 55.1 12.1 144 192-358 673-850 (953)
412 cd02025 PanK Pantothenate kina 92.5 0.34 7.4E-06 52.3 7.5 25 216-240 1-25 (220)
413 PRK13947 shikimate kinase; Pro 92.5 0.094 2E-06 54.2 3.1 26 216-241 3-28 (171)
414 cd03278 ABC_SMC_barmotin Barmo 92.4 0.65 1.4E-05 49.2 9.5 21 216-236 24-44 (197)
415 TIGR02782 TrbB_P P-type conjug 92.4 0.45 9.8E-06 53.9 8.7 87 215-314 133-222 (299)
416 PRK06547 hypothetical protein; 92.4 0.12 2.6E-06 53.3 3.8 27 212-238 13-39 (172)
417 COG3640 CooC CO dehydrogenase 92.4 0.4 8.7E-06 50.7 7.4 36 216-251 2-37 (255)
418 cd02028 UMPK_like Uridine mono 92.3 0.15 3.2E-06 53.2 4.3 26 216-241 1-26 (179)
419 KOG1970 Checkpoint RAD17-RFC c 92.3 2 4.4E-05 50.8 13.6 42 197-238 88-134 (634)
420 COG0003 ArsA Predicted ATPase 92.3 0.21 4.5E-06 56.7 5.6 35 214-248 2-36 (322)
421 PF07724 AAA_2: AAA domain (Cd 92.2 0.11 2.4E-06 53.6 3.2 42 214-256 3-45 (171)
422 cd03244 ABCC_MRP_domain2 Domai 92.2 0.56 1.2E-05 50.7 8.9 24 213-236 29-52 (221)
423 cd03240 ABC_Rad50 The catalyti 92.2 0.55 1.2E-05 50.1 8.6 20 216-235 24-43 (204)
424 COG1419 FlhF Flagellar GTP-bin 92.2 0.62 1.4E-05 53.6 9.4 36 214-249 203-240 (407)
425 PRK06995 flhF flagellar biosyn 92.2 2 4.4E-05 51.5 14.1 26 214-239 256-281 (484)
426 cd00227 CPT Chloramphenicol (C 92.1 0.12 2.6E-06 53.7 3.4 25 215-239 3-27 (175)
427 COG0467 RAD55 RecA-superfamily 92.1 0.36 7.8E-06 53.7 7.4 46 204-249 13-58 (260)
428 COG1224 TIP49 DNA helicase TIP 92.1 0.27 5.8E-06 54.8 6.0 55 189-243 37-94 (450)
429 PRK03846 adenylylsulfate kinas 92.1 0.2 4.4E-06 53.2 5.2 37 212-248 22-58 (198)
430 PF08298 AAA_PrkA: PrkA AAA do 92.1 0.32 6.9E-06 55.1 6.8 52 190-241 60-115 (358)
431 cd03237 ABC_RNaseL_inhibitor_d 92.0 0.59 1.3E-05 51.5 8.8 24 214-237 25-48 (246)
432 TIGR01359 UMP_CMP_kin_fam UMP- 92.0 0.1 2.2E-06 54.6 2.7 23 216-238 1-23 (183)
433 PF00154 RecA: recA bacterial 92.0 0.34 7.5E-06 54.7 6.9 49 201-249 39-88 (322)
434 PF06068 TIP49: TIP49 C-termin 92.0 0.28 6E-06 55.6 6.1 56 189-244 22-80 (398)
435 cd03253 ABCC_ATM1_transporter 91.9 0.57 1.2E-05 51.3 8.6 25 213-237 26-50 (236)
436 PRK14528 adenylate kinase; Pro 91.9 0.67 1.5E-05 48.6 8.7 24 215-238 2-25 (186)
437 TIGR03878 thermo_KaiC_2 KaiC d 91.9 0.23 4.9E-06 55.2 5.4 38 212-249 34-71 (259)
438 PRK09435 membrane ATPase/prote 91.9 1.1 2.4E-05 51.3 10.9 40 202-241 44-83 (332)
439 KOG0730 AAA+-type ATPase [Post 91.8 1.3 2.8E-05 53.6 11.7 173 191-389 184-386 (693)
440 KOG0739 AAA+-type ATPase [Post 91.8 2.5 5.5E-05 46.1 12.6 48 191-238 133-190 (439)
441 KOG3928 Mitochondrial ribosome 91.8 1.5 3.2E-05 50.1 11.5 54 344-400 404-461 (461)
442 TIGR03575 selen_PSTK_euk L-ser 91.8 0.45 9.7E-06 54.4 7.7 23 217-239 2-24 (340)
443 cd03232 ABC_PDR_domain2 The pl 91.8 0.72 1.6E-05 48.7 8.9 24 213-236 32-55 (192)
444 COG1136 SalX ABC-type antimicr 91.8 0.48 1E-05 50.6 7.4 61 286-349 150-216 (226)
445 COG1428 Deoxynucleoside kinase 91.7 0.14 3E-06 53.4 3.1 26 214-239 4-29 (216)
446 COG0529 CysC Adenylylsulfate k 91.7 0.31 6.7E-06 49.1 5.4 37 212-249 21-57 (197)
447 cd00984 DnaB_C DnaB helicase C 91.7 1.1 2.3E-05 49.3 10.5 53 212-270 11-64 (242)
448 cd02024 NRK1 Nicotinamide ribo 91.7 0.11 2.5E-06 54.1 2.6 23 216-238 1-23 (187)
449 PRK09280 F0F1 ATP synthase sub 91.7 0.43 9.4E-06 56.5 7.6 93 214-308 144-250 (463)
450 PF12775 AAA_7: P-loop contain 91.7 0.21 4.5E-06 55.8 4.7 25 214-238 33-57 (272)
451 PRK05439 pantothenate kinase; 91.6 0.23 4.9E-06 56.1 5.1 29 212-240 84-112 (311)
452 TIGR00455 apsK adenylylsulfate 91.6 0.74 1.6E-05 48.2 8.8 29 212-240 16-44 (184)
453 KOG0727 26S proteasome regulat 91.6 0.24 5.3E-06 52.1 4.8 52 191-242 155-217 (408)
454 PF03266 NTPase_1: NTPase; In 91.6 0.14 3.1E-06 52.5 3.2 24 217-240 2-25 (168)
455 cd00267 ABC_ATPase ABC (ATP-bi 91.6 0.19 4.1E-06 51.1 4.1 123 214-348 25-153 (157)
456 PLN03187 meiotic recombination 91.6 0.37 8E-06 55.3 6.7 36 201-236 113-148 (344)
457 TIGR03600 phage_DnaB phage rep 91.5 1.9 4.1E-05 51.7 13.2 73 193-272 174-247 (421)
458 KOG0735 AAA+-type ATPase [Post 91.5 1.4 3E-05 53.6 11.3 174 191-391 667-872 (952)
459 PRK13543 cytochrome c biogenes 91.5 0.7 1.5E-05 49.7 8.6 24 213-236 36-59 (214)
460 KOG1532 GTPase XAB1, interacts 91.5 0.23 5E-06 53.1 4.5 39 212-251 17-55 (366)
461 COG4240 Predicted kinase [Gene 91.4 0.75 1.6E-05 48.1 8.0 82 212-297 48-134 (300)
462 PRK06217 hypothetical protein; 91.4 0.14 2.9E-06 53.7 2.9 24 216-239 3-26 (183)
463 COG0396 sufC Cysteine desulfur 91.4 0.38 8.3E-06 50.7 6.0 59 286-346 152-216 (251)
464 PF03205 MobB: Molybdopterin g 91.4 0.24 5.1E-06 49.3 4.4 35 215-249 1-36 (140)
465 KOG1051 Chaperone HSP104 and r 91.4 1.8 3.9E-05 55.1 13.0 106 190-309 561-673 (898)
466 COG1102 Cmk Cytidylate kinase 91.4 0.16 3.4E-06 50.4 2.9 24 216-239 2-25 (179)
467 PF00560 LRR_1: Leucine Rich R 91.4 0.1 2.2E-06 33.6 1.1 19 724-742 2-20 (22)
468 PRK13949 shikimate kinase; Pro 91.4 0.15 3.3E-06 52.5 3.1 24 216-239 3-26 (169)
469 cd02023 UMPK Uridine monophosp 91.3 0.14 3E-06 54.4 2.9 23 216-238 1-23 (198)
470 cd03217 ABC_FeS_Assembly ABC-t 91.3 0.68 1.5E-05 49.2 8.2 25 213-237 25-49 (200)
471 KOG0726 26S proteasome regulat 91.3 0.2 4.3E-06 53.9 3.8 53 190-242 184-247 (440)
472 cd02020 CMPK Cytidine monophos 91.3 0.15 3.2E-06 51.1 2.9 23 216-238 1-23 (147)
473 PRK13657 cyclic beta-1,2-gluca 91.2 0.52 1.1E-05 59.3 8.3 24 213-236 360-383 (588)
474 COG1120 FepC ABC-type cobalami 91.2 0.44 9.6E-06 52.0 6.6 24 213-236 27-50 (258)
475 PRK11174 cysteine/glutathione 91.2 0.55 1.2E-05 59.1 8.5 26 213-238 375-400 (588)
476 cd03283 ABC_MutS-like MutS-lik 91.2 0.91 2E-05 48.2 8.9 24 215-238 26-49 (199)
477 cd00464 SK Shikimate kinase (S 91.2 0.17 3.6E-06 51.2 3.2 22 217-238 2-23 (154)
478 TIGR02322 phosphon_PhnN phosph 91.2 0.16 3.6E-06 52.9 3.2 25 215-239 2-26 (179)
479 cd03369 ABCC_NFT1 Domain 2 of 91.1 1.4 3.1E-05 47.0 10.6 24 213-236 33-56 (207)
480 PRK13948 shikimate kinase; Pro 91.1 0.17 3.7E-06 52.6 3.2 28 213-240 9-36 (182)
481 TIGR02239 recomb_RAD51 DNA rep 91.1 0.64 1.4E-05 53.1 8.0 36 201-236 83-118 (316)
482 COG3854 SpoIIIAA ncharacterize 91.1 1.1 2.4E-05 47.1 8.8 111 213-333 136-252 (308)
483 KOG0927 Predicted transporter 91.0 0.46 1E-05 55.9 6.8 51 288-342 231-287 (614)
484 TIGR01313 therm_gnt_kin carboh 91.0 0.88 1.9E-05 46.5 8.4 22 217-238 1-22 (163)
485 TIGR02524 dot_icm_DotB Dot/Icm 91.0 0.41 8.9E-06 55.5 6.5 96 214-316 134-232 (358)
486 TIGR01351 adk adenylate kinase 91.0 0.77 1.7E-05 49.2 8.2 22 217-238 2-23 (210)
487 PRK12678 transcription termina 90.9 0.5 1.1E-05 56.7 7.0 95 214-310 416-517 (672)
488 COG1703 ArgK Putative periplas 90.9 0.39 8.6E-06 52.6 5.7 43 201-243 38-80 (323)
489 cd00071 GMPK Guanosine monopho 90.9 0.14 3.1E-06 50.7 2.3 26 216-241 1-26 (137)
490 PF00006 ATP-synt_ab: ATP synt 90.9 0.23 4.9E-06 53.1 4.0 25 215-239 16-40 (215)
491 PRK10751 molybdopterin-guanine 90.9 0.25 5.5E-06 50.7 4.1 29 213-241 5-33 (173)
492 PF02374 ArsA_ATPase: Anion-tr 90.9 0.28 6E-06 55.8 4.9 34 215-248 2-35 (305)
493 PRK15453 phosphoribulokinase; 90.8 0.32 7E-06 53.5 5.1 29 212-240 3-31 (290)
494 PRK12597 F0F1 ATP synthase sub 90.8 0.58 1.3E-05 55.7 7.5 92 214-308 143-249 (461)
495 PF03969 AFG1_ATPase: AFG1-lik 90.7 0.61 1.3E-05 54.2 7.5 102 213-334 61-167 (362)
496 cd03289 ABCC_CFTR2 The CFTR su 90.7 1.1 2.4E-05 50.1 9.5 26 213-238 29-54 (275)
497 TIGR02768 TraA_Ti Ti-type conj 90.7 0.72 1.6E-05 59.1 8.9 26 25-50 176-201 (744)
498 PRK14723 flhF flagellar biosyn 90.7 1.3 2.9E-05 55.7 10.9 26 214-239 185-210 (767)
499 PRK13946 shikimate kinase; Pro 90.7 0.18 3.9E-06 52.9 3.0 26 214-239 10-35 (184)
500 PTZ00035 Rad51 protein; Provis 90.7 0.72 1.6E-05 53.2 8.0 38 201-238 105-142 (337)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-139 Score=1378.84 Aligned_cols=964 Identities=36% Similarity=0.623 Sum_probs=831.8
Q ss_pred CCCCCCCCCCCccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcc
Q 000943 1 MACMNIKKVSDWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYA 80 (1214)
Q Consensus 1 ~~~~~~~~~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~ 80 (1214)
||+|| |+++.|+|||||||||+|+|++|++||+++|.++||.||+|+ ++++|+.|.+++.+||++|+++|||||++||
T Consensus 1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 66554 445789999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhcCCCceEEEEEEEeecccccccccchhHHhhhhhHhhhcccHHHHHHHHHHHHHHhhccCCcc
Q 000943 81 HSTWCLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEETFRMNIEKVQKWRDALKKVANISGWEL 160 (1214)
Q Consensus 81 ~s~wc~~El~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~aL~~~a~~~g~~~ 160 (1214)
+|+||++||++|++|+++.|+ .|+||||+|||+|||+|+|+||++|++++++ .+.+++++||+||++||+++||++
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~--~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~ 154 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQ--LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHS 154 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCc--eEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceec
Confidence 999999999999999999999 9999999999999999999999999999874 356899999999999999999999
Q ss_pred cc-cchhHHHHHHHhhhhcccCccccccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 161 KD-RNESEFIVDIVKDILKMSSKIPAKFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 161 ~~-~~e~~~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.. ++|+++|++||++| +.++..+++...+++|||+++++++..++..+.+++++|+||||||+||||||+++|+++.
T Consensus 155 ~~~~~E~~~i~~Iv~~v--~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 155 QNWPNEAKMIEEIANDV--LGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred CCCCCHHHHHHHHHHHH--HHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 76 88999999999999 9999988888889999999999999999987778899999999999999999999999999
Q ss_pred cccCccEEEEee--hhhh---c------cCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH
Q 000943 240 HEFEGSSFLANV--REIS---E------KGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL 308 (1214)
Q Consensus 240 ~~F~~~~~~~~~--~~~~---~------~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 308 (1214)
.+|++.+|+... +... . ......++++++.+++......... ...+++++++||+||||||||+.
T Consensus 233 ~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~ 308 (1153)
T PLN03210 233 RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ 308 (1153)
T ss_pred hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH
Confidence 999999988532 1110 0 0113456677777766544332221 35688899999999999999999
Q ss_pred HHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC
Q 000943 309 KQLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 309 ~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 388 (1214)
++|+.+.....|+++||+||||||+++++..++++++|+|+.|++++|++||+++||+...+++++++++++|+++|+|+
T Consensus 309 ~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 309 DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNL 388 (1153)
T ss_pred HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 99999998888999999999999999999888888999999999999999999999998877788999999999999999
Q ss_pred hHHHHHHHhhhCCCChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCH-HHHHHHHhhcccCCCCCHHHHHHHHhhCCCcc
Q 000943 389 PLALSVLGSFLCGKTTKEWESSIQRLKRDSEKDILDILQISFDGLKE-IERKIFLDIACFHRGKSRDYVTKILDYCDFDA 467 (1214)
Q Consensus 389 PLAl~~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~ 467 (1214)
|||++++|+.|++++..+|+.++++++..++..|..+|++||++|++ .+|.||+++||||++.+.+.+..+++.+++.+
T Consensus 389 PLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~ 468 (1153)
T PLN03210 389 PLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDV 468 (1153)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999998888999999999999976 59999999999999999999999999999999
Q ss_pred hhhhHHhhccCceEEecCCeEEecHHHHHHHHHHHHhcCCCCCCcccccCCCccceeccccccceeeEEEEeccCCCCcc
Q 000943 468 VIGIRVLIDKSLIEISSGNRLWMHDLLQEMGQQIVKKQSPEEPGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDD 547 (1214)
Q Consensus 468 ~~~l~~L~~~sLi~~~~~~~~~mHdLv~e~~~~i~~~e~~~~~~~~~rl~~~~~i~~~l~~~~~~~~i~~i~l~~~~~~~ 547 (1214)
..+++.|++++||++. .+++.|||++|+||++++++++ .+||+|+|+|.++++++++..++|++.+++|++|++.. .
T Consensus 469 ~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~-~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI-D 545 (1153)
T ss_pred hhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc-c
Confidence 9999999999999987 6789999999999999999987 78999999999999999999999999999999999887 5
Q ss_pred ccccccChhhhhcCcCeeeecccCc----------cCCCCccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccc
Q 000943 548 DVHLSASAKAFLKMTNLRMLTIGNV----------QLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRM 617 (1214)
Q Consensus 548 ~~~l~~~~~~f~~~~~Lr~L~l~~~----------~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l 617 (1214)
++. +...+|.+|.+|++|.+..+ ++|+++..+|.+||+|+|.+|+++++|+.|.+.+|++|+|++|.+
T Consensus 546 ~~~--i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 546 ELH--IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL 623 (1153)
T ss_pred eee--ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc
Confidence 666 88999999999999999643 367888899999999999999999999999999999999999999
Q ss_pred cccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccccc
Q 000943 618 ERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAM 697 (1214)
Q Consensus 618 ~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l 697 (1214)
+.+|.++..+++|+.|+|++|..+..+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|+.++.+|..+++
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l 703 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL 703 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEec
Q 000943 698 IHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLS 777 (1214)
Q Consensus 698 ~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls 777 (1214)
++|+.|++++|..+..+|+.. .+|++|++++|.+..+|..+ .+++|+.|.+.+|.... ++..+..++.+.
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~----- 773 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPLTPLM----- 773 (1153)
T ss_pred CCCCEEeCCCCCCcccccccc---CCcCeeecCCCccccccccc-cccccccccccccchhh-ccccccccchhh-----
Confidence 999999999999999998754 56899999999999999876 58889999888764321 111111111000
Q ss_pred CCCCCCccCCCCccccccCCc-cccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEe
Q 000943 778 GCSKSKNVGVESLEGLGSSRT-VLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLD 856 (1214)
Q Consensus 778 ~c~~l~~~pl~~L~~L~l~~~-~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~ 856 (1214)
...+++|+.|++++| .+..+|.++.++++|+.|++++|..... +|...++++|+.|+
T Consensus 774 ------~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~----------------LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 774 ------TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET----------------LPTGINLESLESLD 831 (1153)
T ss_pred ------hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe----------------eCCCCCccccCEEE
Confidence 001234455555544 2344677888899999999998876544 34444678899999
Q ss_pred cCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCCc---cccceeeecCccccc
Q 000943 857 LSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQLP---SNIEEVRLNGCASLG 933 (1214)
Q Consensus 857 Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp---~sL~~L~l~~C~~L~ 933 (1214)
|++|... ..+|. ...+|+.|+|++|.++.+|.++..+++|+.|+|++|++|+.+|..+ ++|+.|++.+|++|.
T Consensus 832 Ls~c~~L-~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 832 LSGCSRL-RTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCcc-ccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 9998753 23443 2468899999999999999999999999999999999999987654 567788999999988
Q ss_pred ccccccccch---------h-h--hhcccccccccccchhhHHHHhhhhhHHHhhhcccceeEEEEcCCCCCCCCccccc
Q 000943 934 TLSHALKLCK---------S-I--YTAISCMDCMKLLDNKGLAMLMLNENLELQEASKSIAHLSIVVPGSEIPKCFRYQN 1001 (1214)
Q Consensus 934 ~l~~~~~~~~---------~-l--~~~l~~~nC~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~pg~~iP~wf~~~~ 1001 (1214)
.++..-.... + + .....+.||++ |++... ++ .......+++||.++|+||.||+
T Consensus 908 ~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~-L~~~a~----------l~---~~~~~~~~~l~g~evp~~f~hr~ 973 (1153)
T PLN03210 908 EASWNGSPSEVAMATDNIHSKLPSTVCINFINCFN-LDQEAL----------LQ---QQSIFKQLILSGEEVPSYFTHRT 973 (1153)
T ss_pred cccCCCCchhhhhhcccccccCCchhccccccccC-CCchhh----------hc---ccccceEEECCCccCchhccCCc
Confidence 7653210000 0 0 12235779998 766332 11 11123356799999999999999
Q ss_pred cCcEEE-EEcCCCCcCCCCeEEEEEEEEEeec
Q 000943 1002 EGSSII-VERPSFLYGSGKVVGYAICCVFYVH 1032 (1214)
Q Consensus 1002 ~g~~i~-~~lp~~~~~~~~~~g~~~c~v~~~~ 1032 (1214)
.|++++ |.+|+.|+ +..|.||++|+|+.+.
T Consensus 974 ~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~ 1004 (1153)
T PLN03210 974 TGASLTNIPLLHISP-CQPFFRFRACAVVDSE 1004 (1153)
T ss_pred ccceeeeeccCCccc-CCCccceEEEEEEecC
Confidence 999998 99999998 7889999999999863
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-55 Score=548.27 Aligned_cols=642 Identities=27% Similarity=0.352 Sum_probs=455.3
Q ss_pred ccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH---HhcccCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 194 VGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL---IAHEFEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 194 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
||.+..++++...|..++ ..+++|+||||+||||||+.+++. +..+|+.++|+. ++..+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999997643 399999999999999999999983 678999999998 78889999999999998
Q ss_pred hhcCCCCC-cccccchHHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhh-cCccceeec
Q 000943 271 LLKLPDSG-IWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTT-YGVDEVLKL 348 (1214)
Q Consensus 271 ll~~~~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~l 348 (1214)
+....... ....++....+.+.|++||+||||||||+..+|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 54422211 1223577888999999999999999999999999999999887889999999999999998 888899999
Q ss_pred CCCCHHHHHHHHHHhhhcCCC-CchHHHHHHHHHHHHhCCChHHHHHHHhhhCCC-ChHHHHHHHHHHhcC-----C--C
Q 000943 349 KELHDDEALQLFCKKAFKTHQ-PWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGK-TTKEWESSIQRLKRD-----S--E 419 (1214)
Q Consensus 349 ~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~-~~~~w~~~l~~l~~~-----~--~ 419 (1214)
+.|+++|||.||.+.+|.... ..+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 999999999999999987733 345589999999999999999999999999986 677999999987654 1 4
Q ss_pred ccHHHHHHHhHhCCCHHHHHHHHhhcccCCCC--CHHHHHHHHhhCCCcc------------hhhhHHhhccCceEEecC
Q 000943 420 KDILDILQISFDGLKEIERKIFLDIACFHRGK--SRDYVTKILDYCDFDA------------VIGIRVLIDKSLIEISSG 485 (1214)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~ 485 (1214)
+.|..+++.|||.|+++.|.||+|||.||+++ +++.+...|.++|+.. ...+..|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999999998 4678999999999642 345899999999988642
Q ss_pred ----CeEEecHHHHHHHHHHHHhcCCCCCCcccccCCCccceeccccccceeeEEEEeccCCCCccccccccChhhhhcC
Q 000943 486 ----NRLWMHDLLQEMGQQIVKKQSPEEPGKRSRLWKQEDIHHVLTKNTGTEVIEGIQYDYSSQDDDVHLSASAKAFLKM 561 (1214)
Q Consensus 486 ----~~~~mHdLv~e~~~~i~~~e~~~~~~~~~rl~~~~~i~~~l~~~~~~~~i~~i~l~~~~~~~~~~l~~~~~~f~~~ 561 (1214)
..+.|||+||+||..++.+....... .+.....+.. +.. .. .
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~------------~iv~~~~~~~-------~~~----~~---------~-- 520 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN------------QIVSDGVGLS-------EIP----QV---------K-- 520 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc------------eEEECCcCcc-------ccc----cc---------c--
Confidence 57999999999999999854311000 0000000000 000 00 0
Q ss_pred cCeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCCCccccccccccccc--ccccccc-cccccCccEEecCCC
Q 000943 562 TNLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSR--MERMWSG-IKPLSNLKIMRLCNA 638 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--l~~l~~~-~~~L~~L~~L~Ls~~ 638 (1214)
-+...|.+.+.++.+..++......+|+.|-+..|. +..++.. |..++.|++|||++|
T Consensus 521 -------------------~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 521 -------------------SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred -------------------chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC
Confidence 012355666666666666666655567777777764 5555433 778999999999999
Q ss_pred cCCCCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceeccccc--CCCCC
Q 000943 639 KNLISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCS--KLKKF 714 (1214)
Q Consensus 639 ~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~--~l~~l 714 (1214)
..+..+|. ++++.+||+|+|++ +.+..+|.++++|++|.+||+..+..+..+|... .+.+|++|.+..-. +....
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~ 660 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLL 660 (889)
T ss_pred CccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhh
Confidence 88888887 78899999999998 6788999999999999999999988888887766 49999999987643 11122
Q ss_pred ccccCCCCcceEEEeeCccCcccCcccCCCCCCc----EEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC--CC
Q 000943 715 PEVVGSMECLLELFLDGTAIEELPSSIQLLNGLI----LLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG--VE 788 (1214)
Q Consensus 715 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~----~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--l~ 788 (1214)
-..+.++++|+.|....... .+-..+..+++|. .+.+.. ......+..+..+.+|+.|.+.+|...+... ..
T Consensus 661 l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred HHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhccccc
Confidence 23345555666665544443 1111222233333 333323 3344556678888999999998887754321 11
Q ss_pred CccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcc
Q 000943 789 SLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIP 868 (1214)
Q Consensus 789 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp 868 (1214)
....+. .++++..+...+|.....+. .....++|+.|.+..|...+..+|
T Consensus 739 ~~~~~~--------------~f~~l~~~~~~~~~~~r~l~----------------~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 739 SLIVLL--------------CFPNLSKVSILNCHMLRDLT----------------WLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccchhh--------------hHHHHHHHHhhccccccccc----------------hhhccCcccEEEEecccccccCCC
Confidence 111111 23344444444454433211 123457899999999887654444
Q ss_pred cccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCCccccceeeecCccccccccc
Q 000943 869 SDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQLPSNIEEVRLNGCASLGTLSH 937 (1214)
Q Consensus 869 ~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp~sL~~L~l~~C~~L~~l~~ 937 (1214)
....+..++.+.+..+.+..++ ...++.+++.+..+|-..+.|+.+.+..||++..+|.
T Consensus 789 -~~k~~~~l~~~i~~f~~~~~l~---------~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 789 -KLKALLELKELILPFNKLEGLR---------MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred -HHHHhhhcccEEecccccccce---------eeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 2333444444444333333221 1112222222222222223466666777777777665
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=335.34 Aligned_cols=157 Identities=27% Similarity=0.441 Sum_probs=143.1
Q ss_pred CCCCCCCccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchh
Q 000943 5 NIKKVSDWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTW 84 (1214)
Q Consensus 5 ~~~~~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~w 84 (1214)
+||+++..+|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||++|++|+|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 35556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEEEeecccccccc-cchhHHhhhhhHhhhcccHHHHHHHHHHHHHHhhccCCccc--
Q 000943 85 CLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQ-TASFREAFSKHEETFRMNIEKVQKWRDALKKVANISGWELK-- 161 (1214)
Q Consensus 85 c~~El~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr~q-~g~~~~~~~~~~~~~~~~~~~~~~w~~aL~~~a~~~g~~~~-- 161 (1214)
|++||++|++|+ + .||||||+|+|+|||+| .|. ...+++++||+||++||+++|+++.
T Consensus 98 CLdEL~~I~e~~----~--~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~ 158 (187)
T PLN03194 98 CLHELALIMESK----K--RVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSL 158 (187)
T ss_pred HHHHHHHHHHcC----C--EEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999874 3 79999999999999997 433 1358999999999999999999775
Q ss_pred ccchhHHHHHHHhhhhcccCc
Q 000943 162 DRNESEFIVDIVKDILKMSSK 182 (1214)
Q Consensus 162 ~~~e~~~i~~i~~~i~~~~~~ 182 (1214)
+++|+++|++||+.| .+++
T Consensus 159 ~~~e~e~i~~iv~~v--~k~l 177 (187)
T PLN03194 159 KGNWSEVVTMASDAV--IKNL 177 (187)
T ss_pred CCCHHHHHHHHHHHH--HHHH
Confidence 488999999999999 5544
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-34 Score=328.17 Aligned_cols=268 Identities=34% Similarity=0.543 Sum_probs=212.3
Q ss_pred chhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH--HhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhc
Q 000943 196 IDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL--IAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLK 273 (1214)
Q Consensus 196 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~ 273 (1214)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+. .+.......++.+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999876688999999999999999999999987 889998888887 33445557888888888544
Q ss_pred CCCC--CcccccchHHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCc-cceeecCC
Q 000943 274 LPDS--GIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTTYGV-DEVLKLKE 350 (1214)
Q Consensus 274 ~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~~ 350 (1214)
.... ...+.......+.+.|.++++|||||||++...|+.+...++....|++||||||+..++..+.. ...|+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3221 34566678899999999999999999999999998888777666789999999999988877654 67999999
Q ss_pred CCHHHHHHHHHHhhhcCC-CCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCC-ChHHHHHHHHHHhcCC------CccH
Q 000943 351 LHDDEALQLFCKKAFKTH-QPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGK-TTKEWESSIQRLKRDS------EKDI 422 (1214)
Q Consensus 351 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~-~~~~w~~~l~~l~~~~------~~~i 422 (1214)
|+.+||++||.+.++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|+..++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997665 2334456788999999999999999999999553 6788999998776543 4679
Q ss_pred HHHHHHhHhCCCHHHHHHHHhhcccCCCCC--HHHHHHHHhhCCCcc
Q 000943 423 LDILQISFDGLKEIERKIFLDIACFHRGKS--RDYVTKILDYCDFDA 467 (1214)
Q Consensus 423 ~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~~~~ 467 (1214)
..++..||+.|+++.|+||+++|+||.+.+ .+.+..+|.++|+..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999865 889999999887654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1e-31 Score=355.74 Aligned_cols=429 Identities=20% Similarity=0.217 Sum_probs=337.7
Q ss_pred CCCCcccccCCCccceeccccccc--eeeEEEEeccCCCCccccccccChhhhhcCcCeeeecccCccCCCC----ccCC
Q 000943 508 EEPGKRSRLWKQEDIHHVLTKNTG--TEVIEGIQYDYSSQDDDVHLSASAKAFLKMTNLRMLTIGNVQLPEG----LEFL 581 (1214)
Q Consensus 508 ~~~~~~~rl~~~~~i~~~l~~~~~--~~~i~~i~l~~~~~~~~~~l~~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l 581 (1214)
.+++++.+.|...+.+......+. ...+..+.+....... .....|.++++|++|++++|.+.+. +..-
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~-----~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~ 116 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISG-----KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT 116 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccc-----cCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence 345566677865433322222221 2345555554433211 2256789999999999999876532 2323
Q ss_pred CCCceEEEecCCCCCCCCCCCCccccccccccccccc-ccccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEecc
Q 000943 582 PNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRME-RMWSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLR 659 (1214)
Q Consensus 582 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~ 659 (1214)
..+||+|++++|.+........+.+|++|+|++|.+. .+|..+..+++|++|+|++|.....+|. ++++++|++|+|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 4579999999998864333345889999999999997 7788899999999999999987766664 8999999999999
Q ss_pred CccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCc-cc
Q 000943 660 GCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE-EL 737 (1214)
Q Consensus 660 ~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~l 737 (1214)
+|.....+|..++.+++|++|+|++|.....+|..+ ++++|++|++++|.....+|..++++++|++|++++|.+. .+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 998888899999999999999999988777888877 8999999999999888889999999999999999999987 67
Q ss_pred CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC-----CCCccccccCCcccc-CCcccccccC
Q 000943 738 PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG-----VESLEGLGSSRTVLR-NPESSIFSMQ 811 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~-~~~~~~~~l~ 811 (1214)
|.++..+++|+.|++++|.....+|..+.++++|+.|++++|......| +++|+.|++++|.+. .+|..+..++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 8899999999999999998888899999999999999999998877665 788999999999987 4688889999
Q ss_pred CCcEEeecCCCCCCCCCc--------ccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeC
Q 000943 812 NFEALSFLGWTLPQSLPS--------PYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCL 882 (1214)
Q Consensus 812 ~L~~L~l~~~~~~~~l~~--------~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L 882 (1214)
+|+.|++++|.+.+..|. ..+....|.+...+|. +..+++|+.|+|++|++. +.+|..+..+++|+.|+|
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEEC
Confidence 999999999987654432 2344566666666665 677888999999998884 467888888888888888
Q ss_pred CCCCCe-ecCcccCCCCCCCEEeecCCcCCCcccCCc--cccceeeecCcccccccccccccc
Q 000943 883 SKNKFI-LLPESISCLSKLWIIDLEECKRLQSLSQLP--SNIEEVRLNGCASLGTLSHALKLC 942 (1214)
Q Consensus 883 ~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp--~sL~~L~l~~C~~L~~l~~~~~~~ 942 (1214)
++|.+. .+|..+..+++|+.|++++|+....+|... ++|+.|++++|.....+|..+..+
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh
Confidence 888887 556667778888888888887666665432 567777777776666666544433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5e-30 Score=339.73 Aligned_cols=385 Identities=22% Similarity=0.267 Sum_probs=218.6
Q ss_pred hhhhcCcCeeeecccCccCC----CCccCCCCCceEEEecCCCCC-CCCCCC-Cccccccccccccccc-cccccccccc
Q 000943 556 KAFLKMTNLRMLTIGNVQLP----EGLEFLPNELRFLEWHGYPFK-SLPSNF-QPENFFELNMCYSRME-RMWSGIKPLS 628 (1214)
Q Consensus 556 ~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~l~-~l~~~~~~L~ 628 (1214)
..|.++++|++|++++|.+. ..+..++ +|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+..++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 44556666666666655432 2222222 3666666666543 345444 5566666666666555 4555566666
Q ss_pred CccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecc
Q 000943 629 NLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLS 706 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 706 (1214)
+|++|+|++|.....+| .++++++|++|+|++|.....+|.+++.+++|++|+|++|.....+|..+ ++++|++|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 66666666665544444 35566666666666655545555566666666666666655444555544 55666666666
Q ss_pred cccCCCCCccccCCCCcceEEEeeCccCc-ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 707 GCSKLKKFPEVVGSMECLLELFLDGTAIE-ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 707 ~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
+|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.....+|..++.+++|+.|++++|......
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 66555555666666666666666666655 45555666666666666666555555555555555666666555554444
Q ss_pred C-----CCCccccccCCccccC-CcccccccCCCcEEeecCCCCCCCCCc--------ccccccCCcccccCCCcCCCCC
Q 000943 786 G-----VESLEGLGSSRTVLRN-PESSIFSMQNFEALSFLGWTLPQSLPS--------PYLRRSSHNVALRLPSLLGLCS 851 (1214)
Q Consensus 786 p-----l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~--------~~l~~~~~~~~~~lp~~~~l~~ 851 (1214)
| +++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+..+. ..+.+..|...+.+|.....++
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 476 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccccc
Confidence 4 4556666666666553 355555666666666666655443321 2233444555555555445556
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecCCcCCCcccCCc---cccceeeec
Q 000943 852 LTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEECKRLQSLSQLP---SNIEEVRLN 927 (1214)
Q Consensus 852 L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp---~sL~~L~l~ 927 (1214)
|+.|+|++|++. +.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.....+|... ++|+.|+++
T Consensus 477 L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 477 LENLDLSRNQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred ceEEECcCCccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 666666666653 345556666666666666666665 555666666666666666665444444221 456666666
Q ss_pred Ccccccccccccccc
Q 000943 928 GCASLGTLSHALKLC 942 (1214)
Q Consensus 928 ~C~~L~~l~~~~~~~ 942 (1214)
+|.....+|..+..+
T Consensus 556 ~N~l~~~~p~~l~~l 570 (968)
T PLN00113 556 QNQLSGEIPKNLGNV 570 (968)
T ss_pred CCcccccCChhHhcC
Confidence 666555555544443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5e-28 Score=270.62 Aligned_cols=340 Identities=24% Similarity=0.282 Sum_probs=271.4
Q ss_pred hhhhhcCcCeeeecccCccC---CCCccCCCCCceEEEecCCCCCCCCCCC-Cccccccccccccccc--cccccccccc
Q 000943 555 AKAFLKMTNLRMLTIGNVQL---PEGLEFLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRME--RMWSGIKPLS 628 (1214)
Q Consensus 555 ~~~f~~~~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~--~l~~~~~~L~ 628 (1214)
+.....|+.++.|.+....+ |+.+..+. +|..|.+.+|.+.++-... .+..|+.+.+..|+++ .+|..+-+|.
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lq-kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQ-KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK 103 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHHHHHh-hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccc
Confidence 44556788888888876554 33333332 4778888888887776655 6788888888888887 6788888888
Q ss_pred CccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCcccc-CCCCCcEEecCCCCCCCccCccc-ccccccceecc
Q 000943 629 NLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLL-LHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLS 706 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~-~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 706 (1214)
.|..||||+|+....+..+...+|+-+|+|++ +++..+|.+++ +|+.|-+|+|++ +.+..+|+-+ .+..|++|.|+
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcC
Confidence 99999999987665566688888888999988 56788887654 888889999988 6788888888 78889999999
Q ss_pred cccCCCCCccccCCCCcceEEEeeCccCc--ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCc
Q 000943 707 GCSKLKKFPEVVGSMECLLELFLDGTAIE--ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKN 784 (1214)
Q Consensus 707 ~c~~l~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~ 784 (1214)
+|....---..+-.|++|+.|.++++.-+ .+|.++..+.+|..++++.| ++..+|..+.++++|+.|+||+|.+.+-
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee
Confidence 87643322233445778888999888655 78999999999999999874 6778899999999999999999886543
Q ss_pred cC----CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCC
Q 000943 785 VG----VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSD 859 (1214)
Q Consensus 785 ~p----l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~ 859 (1214)
.- -.+|+.|+++.|.++.+|..+..++.|+.|.+.+|++.-. .+|+ +..+..|+.+..++
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe---------------GiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE---------------GIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc---------------CCccchhhhhhhHHHHhhc
Confidence 22 5688999999999999999999999999998888876522 3455 77788899999999
Q ss_pred CCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCccc
Q 000943 860 CNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLS 915 (1214)
Q Consensus 860 ~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp 915 (1214)
|++. .+|+.++.+..|+.|.|+.|.+..+|+.|.-|+.|+.|++..+++|..-|
T Consensus 326 N~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 326 NKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 9884 48999999999999999999999999999999999999999999887655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5.1e-28 Score=270.56 Aligned_cols=353 Identities=22% Similarity=0.339 Sum_probs=292.8
Q ss_pred eeeecccCccCCC-----CccCCCCCceEEEecCCCCCCCCCCC-CcccccccccccccccccccccccccCccEEecCC
Q 000943 564 LRMLTIGNVQLPE-----GLEFLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCN 637 (1214)
Q Consensus 564 Lr~L~l~~~~l~~-----~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~ 637 (1214)
.|-.++++|.+++ +.... .++++|.+....+..+|+.. .+.+|.+|.+.+|++..+...+..|+.||.+++.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 3445666665543 33332 35899999999999999887 88999999999999999988899999999999998
Q ss_pred CcC--CCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCC
Q 000943 638 AKN--LISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKK 713 (1214)
Q Consensus 638 ~~~--l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~ 713 (1214)
|+. ...++++-.+..|..|||++ +.++++|..+.+-+++..|+|++ +++.++|..+ ++.-|-.|+||+ +.++.
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEM 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhh
Confidence 863 33456788899999999999 57899999999999999999998 6788888765 888999999998 46888
Q ss_pred CccccCCCCcceEEEeeCccCcccC-cccCCCCCCcEEecCCCCC-CCcCCcccCCCCCCCEEEecCCCCCCccC-----
Q 000943 714 FPEVVGSMECLLELFLDGTAIEELP-SSIQLLNGLILLNLEKCTH-LVGLPSTINDLTSLITLNLSGCSKSKNVG----- 786 (1214)
Q Consensus 714 lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~-l~~lp~~l~~L~sL~~L~ls~c~~l~~~p----- 786 (1214)
+|..+..+.+|++|.|++|.+..+- ..+..+++|+.|.+++.+. +..+|.++..|.+|..+++|.|+.. .+|
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 9999999999999999999776321 1233577888888887654 4568989999999999999877643 334
Q ss_pred CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCC
Q 000943 787 VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEG 865 (1214)
Q Consensus 787 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~ 865 (1214)
+.+|..|++++|.++++......-.+|++|+++.|.++ .+|. +..++.|+.|.+.+|++.-+
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-----------------~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-----------------VLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-----------------cchHHHhhhHHHHHHHhccCccccc
Confidence 77889999999999988888888888999999888775 3455 77899999999999999989
Q ss_pred CcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccC---CccccceeeecCccccccccccc
Q 000943 866 AIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQ---LPSNIEEVRLNGCASLGTLSHAL 939 (1214)
Q Consensus 866 ~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~---lp~sL~~L~l~~C~~L~~l~~~~ 939 (1214)
.||+.++.|..|+.+...+|++.-+|+++..|.+|+.|.|++ +.|..+|+ +.+.|+.|+++.+++|..-|.+-
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 999999999999999999999999999999999999999975 67778885 34899999999999998777643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-24 Score=243.34 Aligned_cols=355 Identities=22% Similarity=0.204 Sum_probs=195.3
Q ss_pred eeecccCccCCCC-----ccCCCCCceEEEecCCCCCCCCCCC--CcccccccccccccccccccccccccCccEEecCC
Q 000943 565 RMLTIGNVQLPEG-----LEFLPNELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCN 637 (1214)
Q Consensus 565 r~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~ 637 (1214)
+.|+.++.+++.. ...+|..-+.|++++|.+..+...+ ++.+|++++|.+|.+..+|.......+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 3455555444332 3445555666777777666665442 66777777777777777777666666777777776
Q ss_pred CcCCCCCC-CCCCCCCccEEeccCccCCCccCc-cccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCC
Q 000943 638 AKNLISTP-DLTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKK 713 (1214)
Q Consensus 638 ~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~ 713 (1214)
|.+..... .++.++.|+.|||+. +.+.++|. ++..-.++++|+|++| .++.+.... .+.+|-+|.|+.|.....
T Consensus 135 N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCccccc
Confidence 65433222 255666677777776 34555553 3334466777777663 344443222 455666666766554443
Q ss_pred CccccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCC-----ccCC
Q 000943 714 FPEVVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSK-----NVGV 787 (1214)
Q Consensus 714 lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~-----~~pl 787 (1214)
-+..+.++++|+.|+|..|.|+.+ -..+..|++|+.|.|..|....--...|..|..+++|+|+.|+... .+.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 344556666777777776666654 2345666666666666655444334445666666666666665432 2336
Q ss_pred CCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCC
Q 000943 788 ESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGA 866 (1214)
Q Consensus 788 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~ 866 (1214)
.+|+.|+++.|.|..+ +++...+++|+.|+|+.|.+....+ .++..+..|++|+|++|.+..
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~---------------~sf~~L~~Le~LnLs~Nsi~~-- 355 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE---------------GSFRVLSQLEELNLSHNSIDH-- 355 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCCh---------------hHHHHHHHhhhhcccccchHH--
Confidence 6666666666666665 4555566666666666665542211 014445555555555555422
Q ss_pred cc-cccCCCCCCcEEeCCCCCCe-ecC---cccCCCCCCCEEeecCCcCCCcccC----CccccceeeecCccccccccc
Q 000943 867 IP-SDIGNLCSLKELCLSKNKFI-LLP---ESISCLSKLWIIDLEECKRLQSLSQ----LPSNIEEVRLNGCASLGTLSH 937 (1214)
Q Consensus 867 lp-~~l~~l~sL~~L~L~~n~l~-~lp---~~i~~l~~L~~L~L~~C~~L~~lp~----lp~sL~~L~l~~C~~L~~l~~ 937 (1214)
+. ..+.++++|+.|+|++|.+. .+. ..+..+++|+.|++.++ +|+++|. -.++|++|++.++....--|.
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeeccc
Confidence 21 22445555555555555544 111 23444555555555552 4455442 114555555555554333333
Q ss_pred cc
Q 000943 938 AL 939 (1214)
Q Consensus 938 ~~ 939 (1214)
.|
T Consensus 435 AF 436 (873)
T KOG4194|consen 435 AF 436 (873)
T ss_pred cc
Confidence 33
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.9e-23 Score=270.90 Aligned_cols=313 Identities=25% Similarity=0.402 Sum_probs=259.9
Q ss_pred hhhhcC-cCeeeecccCccC---CCCccCCCCCceEEEecCCCCCCCCCCC-Ccccccccccccc-cccccccccccccC
Q 000943 556 KAFLKM-TNLRMLTIGNVQL---PEGLEFLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYS-RMERMWSGIKPLSN 629 (1214)
Q Consensus 556 ~~f~~~-~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~-~l~~l~~~~~~L~~ 629 (1214)
..|..+ .+||.|.+.++.+ |..+ -+.+|+.|++.++.++.+|..+ .+.+|+.|+|+++ .++.+| .+..+++
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~ 658 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN 658 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCc
Confidence 345555 4699999988654 3333 3568999999999999999877 7899999999986 467777 4788999
Q ss_pred ccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccc
Q 000943 630 LKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGC 708 (1214)
Q Consensus 630 L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 708 (1214)
|+.|+|++|..+..+|. +.++++|+.|++++|..+..+|..+ ++++|+.|+|++|..+..+|.. ..+|+.|+|+++
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n 735 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDET 735 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCC
Confidence 99999999998888775 7899999999999999999999877 8999999999999999998864 468999999987
Q ss_pred cCCCCCccccCCCCcceEEEeeCccCcccCcc--------cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCC
Q 000943 709 SKLKKFPEVVGSMECLLELFLDGTAIEELPSS--------IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 709 ~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~--------i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
. +..+|..+ .+++|++|.+.++....++.. ....++|+.|+|++|..+..+|.+++++++|+.|++++|.
T Consensus 736 ~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 736 A-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred c-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 5 67788765 678899999987654433322 2235789999999999999999999999999999999998
Q ss_pred CCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCC
Q 000943 781 KSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDC 860 (1214)
Q Consensus 781 ~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~ 860 (1214)
.++.+| ..+ .+++|+.|++++|.....+ |.. ..+|+.|+|++|
T Consensus 814 ~L~~LP------------------~~~-~L~sL~~L~Ls~c~~L~~~----------------p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 814 NLETLP------------------TGI-NLESLESLDLSGCSRLRTF----------------PDI--STNISDLNLSRT 856 (1153)
T ss_pred CcCeeC------------------CCC-CccccCEEECCCCCccccc----------------ccc--ccccCEeECCCC
Confidence 776665 222 5788999999998765432 221 358999999999
Q ss_pred CCCCCCcccccCCCCCCcEEeCCCC-CCeecCcccCCCCCCCEEeecCCcCCCccc
Q 000943 861 NLGEGAIPSDIGNLCSLKELCLSKN-KFILLPESISCLSKLWIIDLEECKRLQSLS 915 (1214)
Q Consensus 861 ~l~~~~lp~~l~~l~sL~~L~L~~n-~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp 915 (1214)
.+.. +|.++..+++|+.|+|++| +++.+|..+..+++|+.|++++|++|..++
T Consensus 857 ~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 857 GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9965 9999999999999999997 888999999999999999999999998654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=8.1e-26 Score=242.76 Aligned_cols=254 Identities=24% Similarity=0.323 Sum_probs=214.2
Q ss_pred cCeeeecccCccC---CCCccCCCCCceEEEecCCCCCCCCCCC-CcccccccccccccccccccccccccCccEEecCC
Q 000943 562 TNLRMLTIGNVQL---PEGLEFLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCN 637 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~ 637 (1214)
..|..|.++.|.+ ..++..++. +.+|..+++.+..+|+.+ .+..++.|+.++|++.++|+.+..+.+|+.|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~-l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLAC-LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccc-eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 3455566666653 345555543 889999999999999887 88999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcc-cccccccceecccccCCCCCcc
Q 000943 638 AKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-IAMIHLRKLVLSGCSKLKKFPE 716 (1214)
Q Consensus 638 ~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~~l~~L~~L~Ls~c~~l~~lp~ 716 (1214)
|.....+++++.+..|+.|+..+ +.+..+|..++++.+|..|++.++ .++.+|+. +.++.|++|+... +.++.+|+
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~ 200 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPP 200 (565)
T ss_pred cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCCh
Confidence 99888888899999999999887 578899999999999999999995 55556554 4899999999877 46889999
Q ss_pred ccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccC-CCCCCCEEEecCCCCCCccC-----CCCc
Q 000943 717 VVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTIN-DLTSLITLNLSGCSKSKNVG-----VESL 790 (1214)
Q Consensus 717 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~-~L~sL~~L~ls~c~~l~~~p-----l~~L 790 (1214)
.++.|.+|+.|+|..|.|..+| .|..+..|.+|++..| .+..+|...+ +|++|.+|++..|.. +..| +.+|
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhh
Confidence 9999999999999999999999 8888899999998875 4556776555 899999999998864 4555 7789
Q ss_pred cccccCCccccCCcccccccCCCcEEeecCCCC
Q 000943 791 EGLGSSRTVLRNPESSIFSMQNFEALSFLGWTL 823 (1214)
Q Consensus 791 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 823 (1214)
++||+++|.++.+|.+++++ .|+.|-+.||++
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 99999999999999999999 899999888865
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4e-24 Score=239.12 Aligned_cols=337 Identities=17% Similarity=0.168 Sum_probs=168.4
Q ss_pred cChhhhhcCcCeeeecccCccCCCC--ccCCCCCceEEEecCCCCCCCCCCC--Ccccccccccccccccccccc-cccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPEG--LEFLPNELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWSG-IKPL 627 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~~--~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~L 627 (1214)
++...|.+++||+.+++.+|.+... +.....+|..|++.+|.+.++.+.- .+..|+.|+|+.|.|..++.. +..-
T Consensus 93 id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 93 IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence 4455556666666666655554321 1223334555555555555554322 344555555555555555533 3444
Q ss_pred cCccEEecCCCcCCCCC-CCCCCCCCccEEeccCccCCCccCcc-ccCCCCCcEEecCCCCCCCccCc-cc-ccccccce
Q 000943 628 SNLKIMRLCNAKNLIST-PDLTGLPNLEELDLRGCTRLRDIHPS-LLLHKNLVSVNLKDCTDLTTLPN-KI-AMIHLRKL 703 (1214)
Q Consensus 628 ~~L~~L~Ls~~~~l~~~-p~~~~l~~L~~L~L~~c~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L 703 (1214)
.++++|+|++|.+...- ..|.++.+|-.|.|+. +.+..+|.- +.+|++|+.|+|..| .+..... .+ ++++|+.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhh
Confidence 55555555555543322 2255555555555555 234444432 333555555555552 2222211 11 45555555
Q ss_pred ecccccCCCCCccccCCCCcceEEEeeCccCcccC-cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCC
Q 000943 704 VLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP-SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 704 ~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
.|..|..-+---..+-.|.++++|+|+.|++..+. .|+-.|+.|+.|+|++|.....-+++..-.++|+.|+|+.|...
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 55553322222223444555555555555555443 24455555555555555554444444555555555555555443
Q ss_pred CccC-----CCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEe
Q 000943 783 KNVG-----VESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLD 856 (1214)
Q Consensus 783 ~~~p-----l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~ 856 (1214)
..-+ +..|++|.++.|.+..+ ...|..+++|+.|+|..|.+...+. ..--.+.++++|++|.
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE------------Daa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE------------DAAVAFNGLPSLRKLR 398 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe------------cchhhhccchhhhhee
Confidence 3222 44555555555555554 3344555555555555554431100 0001155566677777
Q ss_pred cCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCEEeec
Q 000943 857 LSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWIIDLE 906 (1214)
Q Consensus 857 Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~ 906 (1214)
|.+|++.. +| ..+.++++|+.|+|.+|.+.++. ..+..+ +|+.|.+.
T Consensus 399 l~gNqlk~--I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 399 LTGNQLKS--IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecCceeee--cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 77776643 44 34566667777777766666543 344444 66666554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.9e-24 Score=232.28 Aligned_cols=352 Identities=22% Similarity=0.280 Sum_probs=247.4
Q ss_pred cChhhhhcCcCeeeecccCccCC---CCccCCCCCceEEEecCCCCCCCCCCC-Cccccccccccccccccccccccccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLP---EGLEFLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLS 628 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~---~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~ 628 (1214)
..+.+..++..+..|+.+.|++. +.+..++ +++.|+.+.+.+..+|+++ .+..|..|+..+|++..+|.++..+.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 34566677777777777776643 3333333 4777888888888888877 77788888888888888888888888
Q ss_pred CccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccc
Q 000943 629 NLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGC 708 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 708 (1214)
+|..|++.+|+....+|+.-+++.|++||... +.+..+|+.++.+.+|..|+|.. +++..+|..-++..|+.|.++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhccc
Confidence 88888888888777777766688888888877 56788888888888888888888 56777886557778888887764
Q ss_pred cCCCCCccccC-CCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCC----
Q 000943 709 SKLKKFPEVVG-SMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSK---- 783 (1214)
Q Consensus 709 ~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~---- 783 (1214)
.++.+|...+ ++++|..|+|..|+++++|..+..+.+|.+|++++| .+..+|.++++| .|+.|-+.||+.-+
T Consensus 239 -~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 239 -QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred -HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHH
Confidence 4566665544 778888888888888888888888888888888775 456677778888 78888777765310
Q ss_pred --------------------------------------ccC----CCCccccc--------------------------c
Q 000943 784 --------------------------------------NVG----VESLEGLG--------------------------S 795 (1214)
Q Consensus 784 --------------------------------------~~p----l~~L~~L~--------------------------l 795 (1214)
.+| +.+.+.|+ +
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 000 11222333 3
Q ss_pred CCccccCCc------------------------ccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cCCCC
Q 000943 796 SRTVLRNPE------------------------SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLC 850 (1214)
Q Consensus 796 ~~~~l~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~ 850 (1214)
++|.+.++| ..+..+++|..|++++|.+ ..+|. +..+.
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-----------------n~LP~e~~~lv 458 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL-----------------NDLPEEMGSLV 458 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh-----------------hhcchhhhhhh
Confidence 333333333 2334455555555555433 24554 66777
Q ss_pred CCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcc-cCCCCCCCEEeecCCcCCCcccCC---ccccceeee
Q 000943 851 SLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPES-ISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRL 926 (1214)
Q Consensus 851 ~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l 926 (1214)
.|+.|+|+.|.+.. +|..+..+..|+.+-.++|.+..++.+ +.++.+|.+|||.+ ..++.+|.. ..+|++|++
T Consensus 459 ~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRM--LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred hhheeccccccccc--chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEe
Confidence 89999999998744 787777777777777777888877755 77888888888876 456666533 267788888
Q ss_pred cCcc
Q 000943 927 NGCA 930 (1214)
Q Consensus 927 ~~C~ 930 (1214)
+|++
T Consensus 536 ~gNp 539 (565)
T KOG0472|consen 536 DGNP 539 (565)
T ss_pred cCCc
Confidence 8775
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=2.4e-23 Score=245.47 Aligned_cols=352 Identities=22% Similarity=0.213 Sum_probs=221.8
Q ss_pred hhhhcCcCeeeecccCccCCCCccCCC--CCceEEEecCCCCCCCCCCC-CcccccccccccccccccccccccccCccE
Q 000943 556 KAFLKMTNLRMLTIGNVQLPEGLEFLP--NELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKI 632 (1214)
Q Consensus 556 ~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~ 632 (1214)
+...+.-+|+.|++++|++...+..+. .+|+.|.++.|-+++.|... ++.+|++|+|.+|.+..+|.++..+++|++
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 344455569999999998765444333 36999999999999999776 899999999999999999999999999999
Q ss_pred EecCCCcCCCCCCCCCCCCCccEEeccCc-------------------cCCCccCccccCCCCCcEEecCCCCCC-----
Q 000943 633 MRLCNAKNLISTPDLTGLPNLEELDLRGC-------------------TRLRDIHPSLLLHKNLVSVNLKDCTDL----- 688 (1214)
Q Consensus 633 L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c-------------------~~l~~lp~si~~l~~L~~L~L~~c~~l----- 688 (1214)
|+++.|+....++.+..+..++.+..++| .....++..+.+++. .|+|++|...
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS 196 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhh
Confidence 99999987766655555554444444443 333334444444444 4666554332
Q ss_pred -----CccCcc--------cccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCC
Q 000943 689 -----TTLPNK--------IAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKC 755 (1214)
Q Consensus 689 -----~~lp~~--------~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 755 (1214)
+.+-.. +..++|+.|..+.|......+. .--.+|++++++.+.+..+|+|++.+.+|+.|+..+|
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccch
Confidence 211100 1234555555555554422221 1123566666666666666666666666666666654
Q ss_pred CC----------------------CCcCCcccCCCCCCCEEEecCCCCCCccC---------------------------
Q 000943 756 TH----------------------LVGLPSTINDLTSLITLNLSGCSKSKNVG--------------------------- 786 (1214)
Q Consensus 756 ~~----------------------l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--------------------------- 786 (1214)
.. +..+|..+..+++|++|+|..|......+
T Consensus 275 ~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 275 RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE 354 (1081)
T ss_pred hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence 33 33455566667777777776665322111
Q ss_pred ---CCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC--cCCCCCCCEEecCCC
Q 000943 787 ---VESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS--LLGLCSLTKLDLSDC 860 (1214)
Q Consensus 787 ---l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~--~~~l~~L~~L~Ls~~ 860 (1214)
+..|+.|++.+|.+++- -+.+.+..+|+.|++++|.+. .+|. +.+++.|+.|+||+|
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-----------------~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-----------------SFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-----------------cCCHHHHhchHHhHHHhcccc
Confidence 22334444444444432 223344555555555555443 2333 555666677777777
Q ss_pred CCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcc--c-CCc-cccceeeecCcccc
Q 000943 861 NLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSL--S-QLP-SNIEEVRLNGCASL 932 (1214)
Q Consensus 861 ~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~l--p-~lp-~sL~~L~l~~C~~L 932 (1214)
.+.. +|..+..+..|++|...+|.+..+| .+.+++.|+.+||+. .+|+.+ | .+| ++|++|+++|++.+
T Consensus 418 kL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 418 KLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 6654 6666667777777777777777777 677888889999874 455443 3 467 89999999999854
No 15
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=1.1e-20 Score=189.18 Aligned_cols=135 Identities=35% Similarity=0.592 Sum_probs=119.0
Q ss_pred EEEccccccccccHHHHHHHHHHhC--CCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHHHHHHH
Q 000943 16 VFLSFRGEDTRKNFTDHLCAALDQK--GIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDELVKIV 93 (1214)
Q Consensus 16 vFiS~~~~d~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~ 93 (1214)
|||||++.|.+..|+++|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444789999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEEEEeecccccc-cccchhHHhhhhhHhhhccc--HHHHHHHHHHHH
Q 000943 94 ELKSTNGQQQVIFPIFYDVEPTVVR-KQTASFREAFSKHEETFRMN--IEKVQKWRDALK 150 (1214)
Q Consensus 94 ~~~~~~~~~~~v~Pi~~~v~p~~vr-~q~g~~~~~~~~~~~~~~~~--~~~~~~w~~aL~ 150 (1214)
++....+....|+||||+|.+++++ ++.+.|+..+..+..-.... ......|+.++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998876334999999999999999 89999999998887655443 567889998865
No 16
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.78 E-value=8.8e-19 Score=175.82 Aligned_cols=136 Identities=43% Similarity=0.705 Sum_probs=115.3
Q ss_pred cccEEEcccc-ccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHHHHH
Q 000943 13 KYDVFLSFRG-EDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDELVK 91 (1214)
Q Consensus 13 ~~dvFiS~~~-~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~ 91 (1214)
+|||||||++ +++++.|+.+|...|+..|+.+|.|++.. |.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 56678999999999999999999998543 33333399999999999999999999999999999999
Q ss_pred HHHHHhc-CCCceEEEEEEEeecccccccccchhHHhhhhhHhhhcccHHHHHHHHHHHHHHh
Q 000943 92 IVELKST-NGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEETFRMNIEKVQKWRDALKKVA 153 (1214)
Q Consensus 92 ~~~~~~~-~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~aL~~~a 153 (1214)
++++..+ ..+ +||||+++..|+++..+.+.++.++.....++.....+ +.|+.++..++
T Consensus 79 a~~~~~~~~~~--~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGL--RVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCC--eEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9998765 334 89999999999999999999999998875555543333 78999887765
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=2.5e-21 Score=228.61 Aligned_cols=337 Identities=20% Similarity=0.239 Sum_probs=246.5
Q ss_pred CceEEEecCCCCCCCCCCC-CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCcc
Q 000943 584 ELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 662 (1214)
+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|++|+|.+|.....+..++.+.+|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N- 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN- 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-
Confidence 4999999999999999988 78999999999999999999999999999999999876555556999999999999994
Q ss_pred CCCccCccccCCCCCcEEecCCCCCCCccC-------------------ccc-ccccccceecccccCC----------C
Q 000943 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLP-------------------NKI-AMIHLRKLVLSGCSKL----------K 712 (1214)
Q Consensus 663 ~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-------------------~~~-~l~~L~~L~Ls~c~~l----------~ 712 (1214)
....+|.-+..+..+..++.++|..+..++ ..+ ++.. .|+|+.|... +
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~ 202 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLE 202 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchh
Confidence 567777777666666666666653333332 222 1222 2555544332 1
Q ss_pred CCccc-------cCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 713 KFPEV-------VGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 713 ~lp~~-------~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
.+-.. .-.-++|+.|+.+.|.+..+- ......+|++++++.+ .+..+|++++.+.+|+.|++..|.. ..+
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~~l 279 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-VAL 279 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchh-hhhcchHHHHhcccceEecccchhH-Hhh
Confidence 11000 001122333333333333111 1123467888888885 5677889999999999999999887 333
Q ss_pred C-----CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCc-------------------------------
Q 000943 786 G-----VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPS------------------------------- 829 (1214)
Q Consensus 786 p-----l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~------------------------------- 829 (1214)
| ..+|+.|.+..|.+..+|.....+++|++|++..|.+......
T Consensus 280 p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 3 7788999999999999998888899999999988876532211
Q ss_pred --ccccccCCcccc-cCCCcCCCCCCCEEecCCCCCCCCCcccc-cCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEee
Q 000943 830 --PYLRRSSHNVAL-RLPSLLGLCSLTKLDLSDCNLGEGAIPSD-IGNLCSLKELCLSKNKFILLPESISCLSKLWIIDL 905 (1214)
Q Consensus 830 --~~l~~~~~~~~~-~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~-l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L 905 (1214)
..++..+|.++. .+|.+.++.+|+.|+|++|.+.. +|.. +.++..|+.|+||||.++.||..+..++.|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 012223343333 46778899999999999999854 7764 67899999999999999999999999999999988
Q ss_pred cCCcCCCcccCCc--cccceeeecCc
Q 000943 906 EECKRLQSLSQLP--SNIEEVRLNGC 929 (1214)
Q Consensus 906 ~~C~~L~~lp~lp--~sL~~L~l~~C 929 (1214)
.+ ..|.++|++- +.|+.+|++.+
T Consensus 438 hs-N~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 438 HS-NQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred cC-CceeechhhhhcCcceEEecccc
Confidence 66 4677888764 79999999754
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=4e-17 Score=200.84 Aligned_cols=254 Identities=23% Similarity=0.259 Sum_probs=136.4
Q ss_pred ceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCC
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l 664 (1214)
-..|+++++.++++|..+ +.+|+.|++.+|+++.+|.. +++|++|+|++|+.. .+|.+ .++|+.|+|++| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCC-ch
Confidence 345666666666666655 23566666666666666642 356666666666433 33432 345666666664 34
Q ss_pred CccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCC
Q 000943 665 RDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLL 744 (1214)
Q Consensus 665 ~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 744 (1214)
..+|.. +.+|+.|+|.+| .++.+|.. +++|+.|+|++| .+..+|... .+|+.|++++|.+..+|.. .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~--p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p 341 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLTSLPTL---P 341 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-cccccccc--ccccceeECCCC-ccccCCCCc---ccccccccccCcccccccc---c
Confidence 444432 244556666653 45555542 345666666554 333444322 2355555666665555531 2
Q ss_pred CCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCC
Q 000943 745 NGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLP 824 (1214)
Q Consensus 745 ~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 824 (1214)
.+|+.|+|++|+. ..+|.. +.+|..|++++|.+..+|.. ..+|+.|++++|.+.
T Consensus 342 ~~Lq~LdLS~N~L-s~LP~l----------------------p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 342 SGLQELSVSDNQL-ASLPTL----------------------PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred cccceEecCCCcc-CCCCCC----------------------CcccceehhhccccccCccc---ccccceEEecCCccc
Confidence 3455555555432 233321 12333344444444444432 235666666666543
Q ss_pred CCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEe
Q 000943 825 QSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIID 904 (1214)
Q Consensus 825 ~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~ 904 (1214)
. +|.. .++|+.|+|++|.+.. +|.. +.+|+.|+|++|+++.+|..+.++++|+.|+
T Consensus 396 ~-----------------LP~l--~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 396 S-----------------LPVL--PSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred C-----------------CCCc--ccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 2 1111 2457777777777643 5643 3456777777777777777777777777777
Q ss_pred ecCCc
Q 000943 905 LEECK 909 (1214)
Q Consensus 905 L~~C~ 909 (1214)
|++|+
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 77765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.2e-16 Score=196.75 Aligned_cols=255 Identities=22% Similarity=0.251 Sum_probs=152.3
Q ss_pred cccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCC
Q 000943 608 FELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTD 687 (1214)
Q Consensus 608 ~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~ 687 (1214)
..|+++.+.+..+|..+. .+|+.|++++|+. ..+|.+ .++|++|+|++| .+..+|.. .++|+.|+|.+| .
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~L-t~LP~l--p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPAL--PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-P 273 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcC-CCCCCC--CCCCcEEEecCC-ccCcccCc---ccccceeeccCC-c
Confidence 445666666666665554 2566666666542 233332 345555555553 34444421 234444444443 2
Q ss_pred CCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCC
Q 000943 688 LTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTIND 767 (1214)
Q Consensus 688 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~ 767 (1214)
++. +|... .+|+.|++++|.++.+|.. +++|+.|+|++|.. ..+|..
T Consensus 274 L~~-----------------------Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l--- 320 (788)
T PRK15387 274 LTH-----------------------LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL--- 320 (788)
T ss_pred hhh-----------------------hhhch---hhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC---
Confidence 333 33322 2344555555555555532 34555555555432 233331
Q ss_pred CCCCCEEEecCCCCCCccC--CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC
Q 000943 768 LTSLITLNLSGCSKSKNVG--VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS 845 (1214)
Q Consensus 768 L~sL~~L~ls~c~~l~~~p--l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~ 845 (1214)
..+|+.|++++|... .+| +.+|+.|++++|.++.+|.. ..+|+.|++++|.+.. +|.
T Consensus 321 p~~L~~L~Ls~N~L~-~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-----------------LP~ 379 (788)
T PRK15387 321 PSELCKLWAYNNQLT-SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-----------------LPA 379 (788)
T ss_pred cccccccccccCccc-cccccccccceEecCCCccCCCCCC---Ccccceehhhcccccc-----------------Ccc
Confidence 124555555555443 233 34678888888888888753 3578888888877642 232
Q ss_pred cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCC---ccccc
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQL---PSNIE 922 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~ 922 (1214)
+ ..+|+.|+|++|.+.. +|.. .++|+.|+|++|.++.+|.. ..+|+.|++++| .++.+|.- .++|+
T Consensus 380 l--~~~L~~LdLs~N~Lt~--LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 380 L--PSGLKELIVSGNRLTS--LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSET 448 (788)
T ss_pred c--ccccceEEecCCcccC--CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCC
Confidence 2 2579999999999964 7753 36899999999999999964 357888999985 47777742 26889
Q ss_pred eeeecCccccccccc
Q 000943 923 EVRLNGCASLGTLSH 937 (1214)
Q Consensus 923 ~L~l~~C~~L~~l~~ 937 (1214)
.|++++|+.-...+.
T Consensus 449 ~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 449 TVNLEGNPLSERTLQ 463 (788)
T ss_pred eEECCCCCCCchHHH
Confidence 999999975544443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.4e-16 Score=197.59 Aligned_cols=223 Identities=23% Similarity=0.296 Sum_probs=148.4
Q ss_pred CeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCC
Q 000943 563 NLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLI 642 (1214)
Q Consensus 563 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~ 642 (1214)
+...|+++++.+...+..+|..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|...
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-
Confidence 45667777777666566677788888888888888887663 578888888888888887654 47888888888654
Q ss_pred CCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCC
Q 000943 643 STPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSM 721 (1214)
Q Consensus 643 ~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l 721 (1214)
.+|. +. .+|+.|+|++| .+..+|..+. ++|+.|+|++| .++.+|..+ ..+|+.|++++|. +..+|..+.
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-Lt~LP~~l~-- 324 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-LTALPETLP-- 324 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-cccCCcccc--
Confidence 3443 32 47888888764 5667776554 47888888875 566676543 2467778887754 445555432
Q ss_pred CcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCc
Q 000943 722 ECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRT 798 (1214)
Q Consensus 722 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~ 798 (1214)
++|+.|++++|.+..+|..+. ++|+.|++++|+. ..+|..+ .++|+.|+|++|... .+| ..+|+.|++++|
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N 398 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQASRN 398 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccC
Confidence 567778888888777776553 5777777777643 4566544 256777777766533 333 234555555555
Q ss_pred cccCCcc
Q 000943 799 VLRNPES 805 (1214)
Q Consensus 799 ~l~~~~~ 805 (1214)
.+..+|.
T Consensus 399 ~L~~LP~ 405 (754)
T PRK15370 399 NLVRLPE 405 (754)
T ss_pred CcccCch
Confidence 5555444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=9.8e-16 Score=190.17 Aligned_cols=159 Identities=18% Similarity=0.296 Sum_probs=98.2
Q ss_pred CCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCc
Q 000943 582 PNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGC 661 (1214)
Q Consensus 582 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 661 (1214)
.+....|+++++.++++|..+ +.+|+.|+|++|+++.+|..+. .+|+.|++++|+. ..+|. +-..+|+.|+|++|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~-~l~~~L~~L~Ls~N 251 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPA-TLPDTIQEMELSIN 251 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCCh-hhhccccEEECcCC
Confidence 345678999999999999865 5688899999999998887654 5888888888754 34443 11246778888775
Q ss_pred cCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCccc
Q 000943 662 TRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSI 741 (1214)
Q Consensus 662 ~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 741 (1214)
. +..+|..+. .+|+.|+|++ +.++.+|..+. .+|++|+|++| .+..+|..+. ++|+.|++++|.+..+|..+
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFH-NKISCLPENLP-EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPETL 323 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcC-CccCccccccC-CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCccc
Confidence 3 556666543 4677777764 45556665432 35666666654 3334443322 24555555555555554432
Q ss_pred CCCCCCcEEecCCC
Q 000943 742 QLLNGLILLNLEKC 755 (1214)
Q Consensus 742 ~~l~~L~~L~L~~c 755 (1214)
. ++|+.|++++|
T Consensus 324 ~--~sL~~L~Ls~N 335 (754)
T PRK15370 324 P--PGLKTLEAGEN 335 (754)
T ss_pred c--ccceeccccCC
Confidence 2 34444444444
No 22
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.53 E-value=6.2e-15 Score=138.86 Aligned_cols=92 Identities=34% Similarity=0.622 Sum_probs=78.0
Q ss_pred EEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHHHHHHHHH
Q 000943 16 VFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDELVKIVEL 95 (1214)
Q Consensus 16 vFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~ 95 (1214)
|||||+++| +.++++|+..|++.|+++|+|. ++.+|+.+.++|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 6899999999999999999997 999999999999999999999999999999999999999988843
Q ss_pred HhcCCCceEEEEEEEeecccccc
Q 000943 96 KSTNGQQQVIFPIFYDVEPTVVR 118 (1214)
Q Consensus 96 ~~~~~~~~~v~Pi~~~v~p~~vr 118 (1214)
.++ .|+||. +++.++.
T Consensus 77 ---~~~--~iipv~--~~~~~~p 92 (102)
T PF13676_consen 77 ---RGK--PIIPVR--LDPCELP 92 (102)
T ss_dssp ---TSE--SEEEEE--CSGGGS-
T ss_pred ---CCC--EEEEEE--ECCcCCC
Confidence 444 799999 6655553
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=9.6e-12 Score=164.56 Aligned_cols=296 Identities=15% Similarity=0.147 Sum_probs=186.1
Q ss_pred ccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 186 KFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 186 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
+|..+..+|-|..-++.+.. ....+++.|.|++|.||||++..+.+. ++.++|+. +.. ...+......
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~--~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE--SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc--ccCCHHHHHH
Confidence 34556788888766555532 246789999999999999999998753 33577875 322 1233344444
Q ss_pred HHHHhhhcCCCC------------CcccccchHHHHHHHhC--CCcEEEEEeCCCCHH------HHHHHhcccCCCCCCc
Q 000943 266 QLLSQLLKLPDS------------GIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK------QLESLAGEREWFGPGS 325 (1214)
Q Consensus 266 ~ll~~ll~~~~~------------~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs 325 (1214)
.++..+-..... ...+.......+...+. +.+++|||||++..+ .+..+... ..++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 444443111100 00111122223333332 689999999998653 23334433 35678
Q ss_pred EEEEEeCCcchhh--hc-CccceeecC----CCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhh
Q 000943 326 RIIITSRDEHLLT--TY-GVDEVLKLK----ELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSF 398 (1214)
Q Consensus 326 ~IIiTTR~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~ 398 (1214)
++|||||...-.. .+ ......++. +|+.+|+.+||....... . ..+.+.++.+.++|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8999999842221 11 112345555 999999999997765322 1 1345678999999999999999877
Q ss_pred hCCCChHHHHHHHHHHhcCCCccHHHHHHH-hHhCCCHHHHHHHHhhcccCCCCCHHHHHHHHhhCCCcchhhhHHhhcc
Q 000943 399 LCGKTTKEWESSIQRLKRDSEKDILDILQI-SFDGLKEIERKIFLDIACFHRGKSRDYVTKILDYCDFDAVIGIRVLIDK 477 (1214)
Q Consensus 399 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~ 477 (1214)
+...... .......+...+...+...+.. .++.||++.+++++.+|+++ .++.+.+..+.+. -+....++.|.+.
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQ 304 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHC
Confidence 7543210 1111222222223456665443 48999999999999999986 6676666666542 2456778999999
Q ss_pred CceEE-ec--CCeEEecHHHHHHHHHHHHhc
Q 000943 478 SLIEI-SS--GNRLWMHDLLQEMGQQIVKKQ 505 (1214)
Q Consensus 478 sLi~~-~~--~~~~~mHdLv~e~~~~i~~~e 505 (1214)
+++.. .+ ...|.+|++++++.+.....+
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99654 22 236899999999999887554
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=6.8e-15 Score=141.63 Aligned_cols=168 Identities=24% Similarity=0.318 Sum_probs=108.5
Q ss_pred CCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCC
Q 000943 596 KSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHK 675 (1214)
Q Consensus 596 ~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~ 675 (1214)
..+|.-|++.+...|.|++|++..+|.++..|.+|+.|++++|+....++.++.+++|+.|++.- +.+..+|..+|.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence 44555666777777777777777777777777777777777776665566677777777777765 45666677777777
Q ss_pred CCcEEecCCCCC-CCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecC
Q 000943 676 NLVSVNLKDCTD-LTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLE 753 (1214)
Q Consensus 676 ~L~~L~L~~c~~-l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 753 (1214)
.|+.|+|.+|+. -..+|..+ .+..|+.|.|+.| ..+.+|..++++++|+.|.+..|.+-++|..++.++.|++|.+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 777777776432 23455544 5666666666653 35566666666666666666666666666666666666666666
Q ss_pred CCCCCCcCCcccC
Q 000943 754 KCTHLVGLPSTIN 766 (1214)
Q Consensus 754 ~c~~l~~lp~~l~ 766 (1214)
+|. +..+|..++
T Consensus 182 gnr-l~vlppel~ 193 (264)
T KOG0617|consen 182 GNR-LTVLPPELA 193 (264)
T ss_pred cce-eeecChhhh
Confidence 643 344444333
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-14 Score=139.91 Aligned_cols=94 Identities=31% Similarity=0.407 Sum_probs=78.8
Q ss_pred CCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccC
Q 000943 687 DLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTIN 766 (1214)
Q Consensus 687 ~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~ 766 (1214)
+...+|..+.+.+...|.||+ +++..+|..+..+.+|+.|++.+|.|+++|.++..+++|+.|++.-| .+..+|..++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccC
Confidence 344566667778888888888 46777888889999999999999999999999999999999999864 5678899999
Q ss_pred CCCCCCEEEecCCCCC
Q 000943 767 DLTSLITLNLSGCSKS 782 (1214)
Q Consensus 767 ~L~sL~~L~ls~c~~l 782 (1214)
.++.|+.|+++.|...
T Consensus 100 s~p~levldltynnl~ 115 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLN 115 (264)
T ss_pred CCchhhhhhccccccc
Confidence 9999999998877643
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=2.5e-14 Score=155.09 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=147.0
Q ss_pred CCCccCCCCCceEEEecCCCCCCCCCC-C-Cccccccccccccccccc-ccccccccCccEEecCCCcCCCCCCC--CCC
Q 000943 575 PEGLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTPD--LTG 649 (1214)
Q Consensus 575 ~~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p~--~~~ 649 (1214)
.+.+..+|.+...+.+..|.++++|+. | .+++|+.|+|++|.|+.+ |..|+.+..|..|-+-+++.+..+|. |.+
T Consensus 59 ~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 59 TEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 344556666677777777777777763 3 667777777777777655 44566666666666655444555553 666
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCC------------CCCc
Q 000943 650 LPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKL------------KKFP 715 (1214)
Q Consensus 650 l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l------------~~lp 715 (1214)
+..|+.|.+.-|..--.....+..+++|..|.+.+ +.+..++... .+.+++++.+..+... ...|
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 66666666655432222223455666666666666 4455555422 5666666665544311 1111
Q ss_pred cccCCCCcceEEEeeC--------------------------ccCcccC-cccCCCCCCcEEecCCCCCCCcCCcccCCC
Q 000943 716 EVVGSMECLLELFLDG--------------------------TAIEELP-SSIQLLNGLILLNLEKCTHLVGLPSTINDL 768 (1214)
Q Consensus 716 ~~~~~l~~L~~L~L~~--------------------------~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L 768 (1214)
..++......-..+.. +.....| ..|..|++|+.|+|++|+....-+.+|.++
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 1111111111110100 0111111 125667788888888877777777777788
Q ss_pred CCCCEEEecCCCCCCc-----cCCCCccccccCCccccCC-cccccccCCCcEEeecCCCCC
Q 000943 769 TSLITLNLSGCSKSKN-----VGVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLP 824 (1214)
Q Consensus 769 ~sL~~L~ls~c~~l~~-----~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~ 824 (1214)
..|+.|.|..|+.... ..+..|+.|++.+|.|+.+ |.+|..+.+|.+|++-+|++.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8888888877764321 1267788888888888876 777888888888888776654
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=5.1e-14 Score=152.71 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=101.3
Q ss_pred EEecCCCCCCCCCCCCcccccccccccccccccccc-cccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCC
Q 000943 588 LEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLR 665 (1214)
Q Consensus 588 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~ 665 (1214)
.+-++-.++.+|.+. +..-+++.|..|+|+.+|.+ |+.+++||.||||+|.+...-|+ |.+++.|-.|.+-+++.++
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 455566778888876 67788999999999999966 89999999999999987666565 8888888888877766777
Q ss_pred ccCcc-ccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc-ccCC
Q 000943 666 DIHPS-LLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-SIQL 743 (1214)
Q Consensus 666 ~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~ 743 (1214)
.+|.. ++.|.. |+.|.+.-|...-...+.+..|++|..|.+..|.++.++. ++..
T Consensus 130 ~l~k~~F~gL~s-----------------------lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~ 186 (498)
T KOG4237|consen 130 DLPKGAFGGLSS-----------------------LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQG 186 (498)
T ss_pred hhhhhHhhhHHH-----------------------HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccc
Confidence 77643 334444 4444444433333344556666667777777777776665 5666
Q ss_pred CCCCcEEecCCCC
Q 000943 744 LNGLILLNLEKCT 756 (1214)
Q Consensus 744 l~~L~~L~L~~c~ 756 (1214)
+..++.+.+..|.
T Consensus 187 l~~i~tlhlA~np 199 (498)
T KOG4237|consen 187 LAAIKTLHLAQNP 199 (498)
T ss_pred hhccchHhhhcCc
Confidence 6666666665544
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=4.9e-14 Score=162.69 Aligned_cols=259 Identities=21% Similarity=0.159 Sum_probs=112.4
Q ss_pred ccccCccEEecCCCcCCCC----CC-CCCCCCCccEEeccCccCC------CccCccccCCCCCcEEecCCCCCCCccCc
Q 000943 625 KPLSNLKIMRLCNAKNLIS----TP-DLTGLPNLEELDLRGCTRL------RDIHPSLLLHKNLVSVNLKDCTDLTTLPN 693 (1214)
Q Consensus 625 ~~L~~L~~L~Ls~~~~l~~----~p-~~~~l~~L~~L~L~~c~~l------~~lp~si~~l~~L~~L~L~~c~~l~~lp~ 693 (1214)
..+.+|+.|+++++..... ++ .+...++|++|+++++..- ..++..+..+++|+.|++++|......+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3444455555555542111 11 1334445555555553221 11223344555666666665544333332
Q ss_pred cc-ccc---cccceecccccCCC----CCccccCCC-CcceEEEeeCccCc-----ccCcccCCCCCCcEEecCCCCCCC
Q 000943 694 KI-AMI---HLRKLVLSGCSKLK----KFPEVVGSM-ECLLELFLDGTAIE-----ELPSSIQLLNGLILLNLEKCTHLV 759 (1214)
Q Consensus 694 ~~-~l~---~L~~L~Ls~c~~l~----~lp~~~~~l-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~l~ 759 (1214)
.+ .+. +|++|++++|.... .+...+..+ ++|++|++++|.+. .++..+..+++|++|++++|....
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 22 222 26666666554321 112223344 55666666666555 233334445556666665554331
Q ss_pred ----cCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCccccccc
Q 000943 760 ----GLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRS 835 (1214)
Q Consensus 760 ----~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~ 835 (1214)
.++..+..+++|+.|++++|..... ....++..+..+++|+.|++++|.+...... .
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--------------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~-~---- 240 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDE--------------GASALAETLASLKSLEVLNLGDNNLTDAGAA-A---- 240 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChH--------------HHHHHHHHhcccCCCCEEecCCCcCchHHHH-H----
Confidence 1222233344555555555532110 0011122334455566666665544321000 0
Q ss_pred CCcccccCCCcCCCCCCCEEecCCCCCCC---CCcccccCCCCCCcEEeCCCCCCee-----cCcccCCC-CCCCEEeec
Q 000943 836 SHNVALRLPSLLGLCSLTKLDLSDCNLGE---GAIPSDIGNLCSLKELCLSKNKFIL-----LPESISCL-SKLWIIDLE 906 (1214)
Q Consensus 836 ~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~---~~lp~~l~~l~sL~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L~ 906 (1214)
+...+ ....+.|+.|++++|.+++ ..+...+..+++|+.|++++|.+.. +...+... +.|+.|++.
T Consensus 241 ---l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 241 ---LASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred ---HHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 00000 0123556666666666542 1123334445666666666666552 22223333 455555554
Q ss_pred C
Q 000943 907 E 907 (1214)
Q Consensus 907 ~ 907 (1214)
+
T Consensus 316 ~ 316 (319)
T cd00116 316 D 316 (319)
T ss_pred C
Confidence 4
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=2.1e-13 Score=157.38 Aligned_cols=237 Identities=24% Similarity=0.179 Sum_probs=125.8
Q ss_pred CCCCCCccEEeccCccC----CCccCccccCCCCCcEEecCCCCCCC------ccCccc-ccccccceecccccCCCCCc
Q 000943 647 LTGLPNLEELDLRGCTR----LRDIHPSLLLHKNLVSVNLKDCTDLT------TLPNKI-AMIHLRKLVLSGCSKLKKFP 715 (1214)
Q Consensus 647 ~~~l~~L~~L~L~~c~~----l~~lp~si~~l~~L~~L~L~~c~~l~------~lp~~~-~l~~L~~L~Ls~c~~l~~lp 715 (1214)
+..+.+|+.|++++|.. ...++..+...+.|++|+++++..-. .++..+ .+++|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 45566789999998753 13355566677788888888754321 111222 45567777777665544444
Q ss_pred cccCCCCc---ceEEEeeCccCc-----ccCcccCCC-CCCcEEecCCCCCCC----cCCcccCCCCCCCEEEecCCCCC
Q 000943 716 EVVGSMEC---LLELFLDGTAIE-----ELPSSIQLL-NGLILLNLEKCTHLV----GLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 716 ~~~~~l~~---L~~L~L~~~~i~-----~lp~~i~~l-~~L~~L~L~~c~~l~----~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
..+..+.. |++|++++|.+. .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 43333333 666666666654 122233444 556666666655431 12223344445555555554322
Q ss_pred CccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC-CcCCCCCCCEEecCCCC
Q 000943 783 KNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP-SLLGLCSLTKLDLSDCN 861 (1214)
Q Consensus 783 ~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp-~~~~l~~L~~L~Ls~~~ 861 (1214)
.. .+..++..+..+++|+.|++++|.+..... ..++ .+..+++|+.|++++|.
T Consensus 179 ~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------------~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 179 DA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGA------------SALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred hH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHH------------HHHHHHhcccCCCCEEecCCCc
Confidence 10 000122233445677777777776542100 0011 14456777788888777
Q ss_pred CCCCCcccccC----CCCCCcEEeCCCCCCe-----ecCcccCCCCCCCEEeecCCc
Q 000943 862 LGEGAIPSDIG----NLCSLKELCLSKNKFI-----LLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 862 l~~~~lp~~l~----~l~sL~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
+.+..+..... ..+.|+.|++++|.++ .++..+..+++|++|++++|.
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 65322211111 2367777777777764 334455556777777777754
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.5e-09 Score=128.97 Aligned_cols=285 Identities=15% Similarity=0.132 Sum_probs=167.8
Q ss_pred ccccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCc--cEEEEeehhhhccCCHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG--SSFLANVREISEKGGLISL 263 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l 263 (1214)
..++.++||++++++|...+... ......+.|+|++|+|||++++.+++.+...... .+++. . ....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHHH
Confidence 35688999999999999998643 2344667899999999999999999987655422 23332 2 223345677
Q ss_pred HHHHHHhhhcCCCC-CcccccchHHHHHHHhC--CCcEEEEEeCCCCHH------HHHHHhcccCCCC-CCcEEEEEeCC
Q 000943 264 QKQLLSQLLKLPDS-GIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK------QLESLAGEREWFG-PGSRIIITSRD 333 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~-~gs~IIiTTR~ 333 (1214)
...++.++...... ...+..+....+.+.+. +++++||||+++... .+..+........ ....+|.++.+
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 77777775442211 11233444555666554 456899999998653 3444443222111 12336666665
Q ss_pred cchhhhcC-------ccceeecCCCCHHHHHHHHHHhhhcC---CC-CchHHHHHHHHHHHHhCCChHHHHHHHhhh---
Q 000943 334 EHLLTTYG-------VDEVLKLKELHDDEALQLFCKKAFKT---HQ-PWKEYEQLSKYVVKYSGGLPLALSVLGSFL--- 399 (1214)
Q Consensus 334 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~-~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L--- 399 (1214)
..+..... ....+.+++++.++..+++..++... .. ..+..+.+++......|..+.|+.++-.+.
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 43322211 12467899999999999998876322 11 122223333333333455777776654322
Q ss_pred --CCC---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCC----CCCHHHHHH----HHhhCCCc
Q 000943 400 --CGK---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHR----GKSRDYVTK----ILDYCDFD 466 (1214)
Q Consensus 400 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~l~~----~~~~~~~~ 466 (1214)
.+. +.+....+++... .......+..||.++|.++..++.... ......+.+ +....+..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 4556666665542 233455688999999998887774432 222222221 22222332
Q ss_pred ------chhhhHHhhccCceEEe
Q 000943 467 ------AVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 467 ------~~~~l~~L~~~sLi~~~ 483 (1214)
....++.|.+.|+|...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 23467889999999864
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=7.6e-12 Score=158.13 Aligned_cols=278 Identities=21% Similarity=0.240 Sum_probs=185.4
Q ss_pred CCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcC-CCCCCC--CCCCCCccEEeccCccCCCccCccc
Q 000943 595 FKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKN-LISTPD--LTGLPNLEELDLRGCTRLRDIHPSL 671 (1214)
Q Consensus 595 l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~-l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~si 671 (1214)
....|........+.+.+.++.+..++.... +++|++|-+..+.. +..++. |..++.|++|||++|..+.++|.+|
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3445655566778888888888888775544 44899999988863 555555 8889999999999999999999999
Q ss_pred cCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCccc---CcccCCCCCC
Q 000943 672 LLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEEL---PSSIQLLNGL 747 (1214)
Q Consensus 672 ~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L 747 (1214)
+.|-+|++|+|++ +.++.+|..+ +++.|.+|++..+..+..+|.....|.+|++|.+.......- -..+.++.+|
T Consensus 592 ~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 9999999999998 7788999998 899999999999888888888888899999998877652211 1112333333
Q ss_pred cEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCC
Q 000943 748 ILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSL 827 (1214)
Q Consensus 748 ~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l 827 (1214)
+.|....+.. .+-..+..++.|.+ ..+.+.+.++.....+.++..+.+|+.|.+.+|......
T Consensus 671 ~~ls~~~~s~--~~~e~l~~~~~L~~---------------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 671 ENLSITISSV--LLLEDLLGMTRLRS---------------LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred hhheeecchh--HhHhhhhhhHHHHH---------------HhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 3333322211 00000111111111 112233333445556778889999999999999886431
Q ss_pred CcccccccCCcccccCCC--cC-CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEE
Q 000943 828 PSPYLRRSSHNVALRLPS--LL-GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWII 903 (1214)
Q Consensus 828 ~~~~l~~~~~~~~~~lp~--~~-~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L 903 (1214)
.. .... .. .+++|..+.+.+|.... .+.+....++|+.|.+..|... .+.+....+..++.+
T Consensus 734 ~~------------~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~ 799 (889)
T KOG4658|consen 734 IE------------WEESLIVLLCFPNLSKVSILNCHMLR--DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKEL 799 (889)
T ss_pred cc------------cccccchhhhHHHHHHHHhhcccccc--ccchhhccCcccEEEEecccccccCCCHHHHhhhcccE
Confidence 10 0000 11 25567777777776533 4455567799999999999665 333445555556553
Q ss_pred ee
Q 000943 904 DL 905 (1214)
Q Consensus 904 ~L 905 (1214)
.+
T Consensus 800 i~ 801 (889)
T KOG4658|consen 800 IL 801 (889)
T ss_pred Ee
Confidence 33
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=6.3e-10 Score=141.53 Aligned_cols=309 Identities=17% Similarity=0.197 Sum_probs=184.3
Q ss_pred CcccchhhHHHHHHHHhhhc-CCcEEEEEEecCCchHHHHHHHHHHHHhcccC---ccEEEEeehhhhccCCHHHHHHHH
Q 000943 192 DLVGIDSRWKKLRFLIDKEL-NGVRMIGICGMGGIGKTTLARVVYDLIAHEFE---GSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
.++||+.+++.|...+.... ....++.+.|.+|||||+|+++|...+...+. ...|-. .....+-..+.+..+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHH
Confidence 37899999999999988543 34679999999999999999999987755411 111110 00000011112222222
Q ss_pred HHhhhcCCC------------------CC-----------------c-----ccccch-----HHHHHHHh-CCCcEEEE
Q 000943 268 LSQLLKLPD------------------SG-----------------I-----WDVYDG-----LKMIGTRL-RYRRVLLI 301 (1214)
Q Consensus 268 l~~ll~~~~------------------~~-----------------~-----~~~~~~-----~~~l~~~L-~~kr~LlV 301 (1214)
..+++...+ .. . ...... ...+.... +.|++++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 222211100 00 0 000000 11222222 34699999
Q ss_pred EeCCCCHHH-----HHHHhcccC--CC-CCCcEEEEEeCCc--chhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCc
Q 000943 302 IDDAFDLKQ-----LESLAGERE--WF-GPGSRIIITSRDE--HLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPW 371 (1214)
Q Consensus 302 LDdv~~~~~-----l~~l~~~~~--~~-~~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (1214)
+||++..+. ++.++.... .+ ......+.|.+.. .+.........+.|.||+..+...|..........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 999986543 333443321 00 0111222233322 11122233468999999999999999887743222
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhhhCCC-------ChHHHHHHHHHHhcCCC-ccHHHHHHHhHhCCCHHHHHHHHh
Q 000943 372 KEYEQLSKYVVKYSGGLPLALSVLGSFLCGK-------TTKEWESSIQRLKRDSE-KDILDILQISFDGLKEIERKIFLD 443 (1214)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl~ 443 (1214)
...+.++.|+++.+|+|+.++.+-..+... +...|..-...+...+. +.+.+.+....+.||...|+++..
T Consensus 238 -~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 238 -LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred -ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 224567889999999999999998888653 33455554444443321 235667888999999999999999
Q ss_pred hcccCCCCCHHHHHHHHhhCCCcchhhhHHhhccCceEEec--------CC---eEEecHHHHHHHHHHHHh
Q 000943 444 IACFHRGKSRDYVTKILDYCDFDAVIGIRVLIDKSLIEISS--------GN---RLWMHDLLQEMGQQIVKK 504 (1214)
Q Consensus 444 la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~mHdLv~e~~~~i~~~ 504 (1214)
.||+.+.++.+.+..++...+......+......++|.+.+ .. +-+.|+++|+.+-....+
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999999999888754444333333333444444321 11 226799999888655443
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=1.3e-09 Score=124.81 Aligned_cols=268 Identities=17% Similarity=0.162 Sum_probs=153.2
Q ss_pred cCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
..|||++..+++|..++... ......+.++|++|+|||+||+++++.+...+ ........ ..... ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~~~~---~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSGPAL---EKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEeccchh---cCchh-HHHH
Confidence 57999999999998888632 23355688999999999999999998775432 11111000 01111 1111
Q ss_pred HHhhhcCCCC-Ccccc----cchHHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhhc--
Q 000943 268 LSQLLKLPDS-GIWDV----YDGLKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTTY-- 340 (1214)
Q Consensus 268 l~~ll~~~~~-~~~~~----~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~-- 340 (1214)
+..+ ..... -+.++ ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...+
T Consensus 76 l~~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111 00000 00000 01112233333333444444443333222211 12345566677765443332
Q ss_pred CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhC------C-C--ChHHHHHHH
Q 000943 341 GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLC------G-K--TTKEWESSI 411 (1214)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~------~-~--~~~~w~~~l 411 (1214)
.....+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..++..+. + . +.+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 123468999999999999999887543222 2245678899999999976654444321 0 0 111111
Q ss_pred HHHhcCCCccHHHHHHHhHhCCCHHHHHHHH-hhcccCC-CCCHHHHHHHHhhCCCcchhhhH-HhhccCceEEecCCe
Q 000943 412 QRLKRDSEKDILDILQISFDGLKEIERKIFL-DIACFHR-GKSRDYVTKILDYCDFDAVIGIR-VLIDKSLIEISSGNR 487 (1214)
Q Consensus 412 ~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~ 487 (1214)
.....+...|.++++.++..+. .++.+.. +...+.+...++.........++ .|++++||...+.++
T Consensus 224 ---------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 224 ---------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred ---------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 1222245668899999888776 4455543 35677888888877777777788 699999998654444
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=2.2e-08 Score=117.89 Aligned_cols=286 Identities=16% Similarity=0.107 Sum_probs=162.4
Q ss_pred ccccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccC------ccEEEEeehhhhccCC
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE------GSSFLANVREISEKGG 259 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~~~~~~ 259 (1214)
..|+.++||++++++|...+... ......+.|+|++|+|||++++++++.+..... ..+++. . ....+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~---~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-C---QILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-C---CCCCC
Confidence 35678999999999999998742 234467899999999999999999987654322 123333 2 22334
Q ss_pred HHHHHHHHHHhhhc--CCCC-CcccccchHHHHHHHhC--CCcEEEEEeCCCCHH-----HHHHHhccc--CCC-CCCcE
Q 000943 260 LISLQKQLLSQLLK--LPDS-GIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK-----QLESLAGER--EWF-GPGSR 326 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~--~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~--~~~-~~gs~ 326 (1214)
...+...++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+.... ... +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 56677777777542 1111 11122233444555553 568999999998761 133333221 111 12344
Q ss_pred EEEEeCCcchhhhcC-------ccceeecCCCCHHHHHHHHHHhhhc---CCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 327 IIITSRDEHLLTTYG-------VDEVLKLKELHDDEALQLFCKKAFK---THQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 327 IIiTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
+|.+|........+. ....+.+++++.++..+++..++.. ...-.++..+.+.+++....|.|- |+.++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555565443221110 1246889999999999999888631 111223333445556777778874 33332
Q ss_pred Hhhh-----CC---CChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCC-C---CCHHHHHH----H
Q 000943 396 GSFL-----CG---KTTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHR-G---KSRDYVTK----I 459 (1214)
Q Consensus 396 g~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~---~~~~~l~~----~ 459 (1214)
-... .+ -+.+..+.+...+. .....-+..+||.+++.++..++...+ + .....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2211 11 14455555554442 233445678999999988777664322 1 12222211 2
Q ss_pred HhhCCCc------chhhhHHhhccCceEEec
Q 000943 460 LDYCDFD------AVIGIRVLIDKSLIEISS 484 (1214)
Q Consensus 460 ~~~~~~~------~~~~l~~L~~~sLi~~~~ 484 (1214)
....|.. ....+..|...|||+...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2222322 234578899999998763
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=4.5e-10 Score=129.39 Aligned_cols=261 Identities=19% Similarity=0.165 Sum_probs=154.1
Q ss_pred ccccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
....+|+|++..++.+..++... ....+.+.|+|++|+|||++|+.+++.+...+ .......... ....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~----~~~~~~~~~~----~~~l 93 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI----RITSGPALEK----PGDL 93 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe----EEEecccccC----hHHH
Confidence 34578999999999998888632 23456788999999999999999999775432 1111100000 1111
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccC-------------------CCCC
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGERE-------------------WFGP 323 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~-------------------~~~~ 323 (1214)
..++.. + ++.-+|++|+++... ..+.+..... ...+
T Consensus 94 ~~~l~~----------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 94 AAILTN----------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHh----------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122211 1 123355566665321 1111110000 0123
Q ss_pred CcEEEEEeCCcchhhhc--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCC
Q 000943 324 GSRIIITSRDEHLLTTY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCG 401 (1214)
Q Consensus 324 gs~IIiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~ 401 (1214)
.+-|..|+|...+...+ .....+++++++.++..+++...+...... -..+.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 45566677755443332 123468999999999999999887544332 2345688999999999965544443221
Q ss_pred CChHHHHHHHHHHhcCCC---ccHHHHHHHhHhCCCHHHHHHHH-hhcccCC-CCCHHHHHHHHhhCCCcchhhhH-Hhh
Q 000943 402 KTTKEWESSIQRLKRDSE---KDILDILQISFDGLKEIERKIFL-DIACFHR-GKSRDYVTKILDYCDFDAVIGIR-VLI 475 (1214)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~ 475 (1214)
.|.... .-..... ......+...+.+|++.+++.+. .+..|.. ....+.+...++......+..++ .|+
T Consensus 228 ----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 111100 0000000 12234456677899999988886 5555654 35678888888777666777778 999
Q ss_pred ccCceEEecCCe
Q 000943 476 DKSLIEISSGNR 487 (1214)
Q Consensus 476 ~~sLi~~~~~~~ 487 (1214)
+.+||+....++
T Consensus 303 ~~~li~~~~~gr 314 (328)
T PRK00080 303 QQGFIQRTPRGR 314 (328)
T ss_pred HcCCcccCCchH
Confidence 999998654443
No 36
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=9.1e-10 Score=120.75 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=101.3
Q ss_pred cccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHH------HHH
Q 000943 193 LVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISL------QKQ 266 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l------~~~ 266 (1214)
|+||++++++|.+.+..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+....... ....... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 799999999999988653 3578899999999999999999997744333444443221110 0001111 111
Q ss_pred H---HHhhhcCCC------CCcccccchHHHHHHHhC--CCcEEEEEeCCCCHH-----------HHHHHhcccCCCCCC
Q 000943 267 L---LSQLLKLPD------SGIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK-----------QLESLAGEREWFGPG 324 (1214)
Q Consensus 267 l---l~~ll~~~~------~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~l~~l~~~~~~~~~g 324 (1214)
+ +........ ............+.+.+. +++++||+||++... .+..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 1 111111100 011122233334444443 356999999998655 12222222111 234
Q ss_pred cEEEEEeCCcchhhh--------cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 325 SRIIITSRDEHLLTT--------YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 325 s~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
..+|+++....+... .+....+.|++|+.+++.+++...+-.. ...+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555554433332 2233459999999999999998875333 11112345668999999999998864
No 37
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.01 E-value=2.8e-08 Score=119.36 Aligned_cols=297 Identities=19% Similarity=0.192 Sum_probs=185.9
Q ss_pred cccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
|..+.+.|-|..-++.+.. ..+.|.+.|..++|.|||||+.+++. ....-..+.|+.-- ....+.......
T Consensus 15 P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~y 85 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLSY 85 (894)
T ss_pred CCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHHH
Confidence 4456778888765555543 24679999999999999999999887 44445667888621 223455566666
Q ss_pred HHHhhhcCCCCC------------cccccchHHHHHHHhC--CCcEEEEEeCCCCHH------HHHHHhcccCCCCCCcE
Q 000943 267 LLSQLLKLPDSG------------IWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK------QLESLAGEREWFGPGSR 326 (1214)
Q Consensus 267 ll~~ll~~~~~~------------~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~ 326 (1214)
++..+....... ..++......+...+. .++..+||||.+-.. .++.+.... .++-.
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeE
Confidence 666543211111 1112222333333333 478999999987432 255555543 47889
Q ss_pred EEEEeCCcchhhh--c-CccceeecC----CCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000943 327 IIITSRDEHLLTT--Y-GVDEVLKLK----ELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFL 399 (1214)
Q Consensus 327 IIiTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 399 (1214)
+|||||...-... + -.+...+++ .|+.+|+.++|...... + -.+..++.+.+...|.+-|+..++=.+
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~--Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---P--LDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---C--CChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999998633221 1 112344443 58999999999776411 1 123457889999999999999998888
Q ss_pred CCCChHHHHHHHHHHhcCCCccHHH-HHHHhHhCCCHHHHHHHHhhcccCCCCCHHHHHHHHhhCCCcchhhhHHhhccC
Q 000943 400 CGKTTKEWESSIQRLKRDSEKDILD-ILQISFDGLKEIERKIFLDIACFHRGKSRDYVTKILDYCDFDAVIGIRVLIDKS 478 (1214)
Q Consensus 400 ~~~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~s 478 (1214)
++.+..+ ..+..+... .+-|.+ ...--+|+||++.|..++.+|++.. ++-+...++.+.. +....++.|..++
T Consensus 238 ~~~~~~~--q~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~~g 311 (894)
T COG2909 238 RNNTSAE--QSLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELERRG 311 (894)
T ss_pred cCCCcHH--HHhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHhCC
Confidence 7332221 111111111 112222 2344579999999999999998742 3333344443322 3445588999999
Q ss_pred ceEE--ec-CCeEEecHHHHHHHHHHHHhcC
Q 000943 479 LIEI--SS-GNRLWMHDLLQEMGQQIVKKQS 506 (1214)
Q Consensus 479 Li~~--~~-~~~~~mHdLv~e~~~~i~~~e~ 506 (1214)
|+-. ++ ++.|..|.++.+|.+...+.+.
T Consensus 312 LFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 312 LFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 8763 32 5679999999999998877643
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.7e-11 Score=139.09 Aligned_cols=212 Identities=23% Similarity=0.338 Sum_probs=141.4
Q ss_pred cccccccccccccccc--cccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCC
Q 000943 610 LNMCYSRMERMWSGIK--PLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTD 687 (1214)
Q Consensus 610 L~L~~~~l~~l~~~~~--~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~ 687 (1214)
|.|++..++.+|.+-. .|.--...||+.|++-..+.+++.+..|+.|.|.. +.+..+|..+.++..|.+|+|+. +.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-ch
Confidence 3444444454443322 22222345666665555444566666666666666 35677788888888888888887 56
Q ss_pred CCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCC
Q 000943 688 LTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTIND 767 (1214)
Q Consensus 688 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~ 767 (1214)
+..+|..++..-|+.|.+++ ++++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|++..|.. ..+|..+
T Consensus 133 lS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~El-- 208 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEEL-- 208 (722)
T ss_pred hhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHHH--
Confidence 77788777777777777776 4567777777777777777777777777777766666666666655432 2222211
Q ss_pred CCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcC
Q 000943 768 LTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLL 847 (1214)
Q Consensus 768 L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~ 847 (1214)
.
T Consensus 209 -------------------------------------------------------------------------------~ 209 (722)
T KOG0532|consen 209 -------------------------------------------------------------------------------C 209 (722)
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCccc---CCCCCCCEEeecCCc
Q 000943 848 GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESI---SCLSKLWIIDLEECK 909 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~C~ 909 (1214)
.-.|..||+++|+++. ||-.+..|..|++|-|.+|.+.+-|..| +...-.++|++.-|.
T Consensus 210 -~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 -SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -CCceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 1136778888888865 8888899999999999999888888655 335557788888884
No 39
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=7.8e-09 Score=106.73 Aligned_cols=142 Identities=29% Similarity=0.379 Sum_probs=86.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccC-----ccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFE-----GSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI 289 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l 289 (1214)
|++.|.|.+|+||||+++.++..+..... ...++...+..........+...+... ...... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~---~~~~~~~~- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQ-LPESIA---PIEELLQE- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHh-hccchh---hhHHHHHH-
Confidence 57899999999999999999987765532 233344444443332222333333333 211111 11111111
Q ss_pred HHHhCCCcEEEEEeCCCCHHH-------------HHHHhcccCCCCCCcEEEEEeCCcch---hhhcCccceeecCCCCH
Q 000943 290 GTRLRYRRVLLIIDDAFDLKQ-------------LESLAGEREWFGPGSRIIITSRDEHL---LTTYGVDEVLKLKELHD 353 (1214)
Q Consensus 290 ~~~L~~kr~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~ 353 (1214)
-....++++||||++++... +..+... ...++.++|||+|.... .........+++.+|++
T Consensus 76 -~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 76 -LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred -HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 12257899999999985432 2222222 12578999999999755 22334446899999999
Q ss_pred HHHHHHHHHhh
Q 000943 354 DEALQLFCKKA 364 (1214)
Q Consensus 354 ~ea~~Lf~~~a 364 (1214)
++..+++.+..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=9.7e-08 Score=107.24 Aligned_cols=179 Identities=21% Similarity=0.210 Sum_probs=105.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHH--
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIG-- 290 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~-- 290 (1214)
+..++.|+|++|+||||+++.+++.+...-...+++. ....+..++...++..+ +...... +.......+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~l-G~~~~~~-~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADF-GLETEGR-DKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHc-CCCCCCC-CHHHHHHHHHHH
Confidence 3568999999999999999999987652211112222 12234456666666553 3322111 1111222222
Q ss_pred --HH-hCCCcEEEEEeCCCCHH--HHHHHh---cccCCCCCCcEEEEEeCCcchhhhc----------CccceeecCCCC
Q 000943 291 --TR-LRYRRVLLIIDDAFDLK--QLESLA---GEREWFGPGSRIIITSRDEHLLTTY----------GVDEVLKLKELH 352 (1214)
Q Consensus 291 --~~-L~~kr~LlVLDdv~~~~--~l~~l~---~~~~~~~~gs~IIiTTR~~~v~~~~----------~~~~~~~l~~L~ 352 (1214)
.. ..+++.++|+||++... .++.+. ...........|++|.... ....+ .....+++++|+
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 22 25788999999998753 344332 2211112233455555432 21111 113467899999
Q ss_pred HHHHHHHHHHhhhcCCC--CchHHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000943 353 DDEALQLFCKKAFKTHQ--PWKEYEQLSKYVVKYSGGLPLALSVLGSFL 399 (1214)
Q Consensus 353 ~~ea~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 399 (1214)
.+|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999877643221 112234678899999999999999888765
No 41
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.90 E-value=4.1e-09 Score=115.97 Aligned_cols=91 Identities=30% Similarity=0.470 Sum_probs=81.5
Q ss_pred CccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCccc--------c
Q 000943 11 DWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAH--------S 82 (1214)
Q Consensus 11 ~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~--------s 82 (1214)
..+.|||||||.. +.+..++-|...|+-+|++||||-+++..| .+.+.+.+.|..++.+|+|++||..+ -
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AG-KFdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAG-KFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcc-cccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4689999999887 468999999999999999999999899988 57789999999999999999999754 4
Q ss_pred hhhHHHHHHHHHHHhcCCCceEEEEEE
Q 000943 83 TWCLDELVKIVELKSTNGQQQVIFPIF 109 (1214)
Q Consensus 83 ~wc~~El~~~~~~~~~~~~~~~v~Pi~ 109 (1214)
.|...|++.+++|.+ .|||||
T Consensus 688 DWVHKEl~~Afe~~K------NIiPI~ 708 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQK------NIIPIF 708 (832)
T ss_pred HHHHHHHHHHHHhcC------Ceeeee
Confidence 699999999998775 799999
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=5.4e-10 Score=127.15 Aligned_cols=189 Identities=21% Similarity=0.312 Sum_probs=150.8
Q ss_pred ceEEEecCCCCCCCCCCC-CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 585 LRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
-...+++.|.+..+|..+ .+..|..+.|.+|.+..+|..+.++..|.+|+|+.|+....++.++.|+ |+.|.+++ ++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-Cc
Confidence 355788888889999887 6778888899999999999999999999999999997666665666655 88888887 67
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccC
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQ 742 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 742 (1214)
++.+|..++.+.+|..|+.+.| .+.++|..+ ++.+|+.|++..| .+..+|+.++.++ |..||+++|++..||-.|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eeeeecccCceeecchhhh
Confidence 8999999998899999999875 566666655 8899999999885 4667888888665 8899999999999999999
Q ss_pred CCCCCcEEecCCCCCCCcCCcccCCC---CCCCEEEecCC
Q 000943 743 LLNGLILLNLEKCTHLVGLPSTINDL---TSLITLNLSGC 779 (1214)
Q Consensus 743 ~l~~L~~L~L~~c~~l~~lp~~l~~L---~sL~~L~ls~c 779 (1214)
+++.|++|-|.+|+ +++-|..++.. .=-++|++.-|
T Consensus 232 ~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 99999999998865 45555554432 22456666666
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=2.1e-09 Score=112.94 Aligned_cols=136 Identities=27% Similarity=0.257 Sum_probs=86.9
Q ss_pred cCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCC
Q 000943 718 VGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSR 797 (1214)
Q Consensus 718 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~ 797 (1214)
+...+.|++|+|++|.|+.+..++.-+++++.|+++.|.....- ++..|++|+.|++|+|..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~L---------------- 341 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLL---------------- 341 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchh----------------
Confidence 33456799999999999999999999999999999998665432 256677777777766543
Q ss_pred ccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCC
Q 000943 798 TVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSL 877 (1214)
Q Consensus 798 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL 877 (1214)
..+..+-..+.|.+.|.+.+|.+.. +..+..+.+|..||+++|++..-.--..+++||.|
T Consensus 342 ---s~~~Gwh~KLGNIKtL~La~N~iE~-----------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 342 ---AECVGWHLKLGNIKTLKLAQNKIET-----------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ---HhhhhhHhhhcCEeeeehhhhhHhh-----------------hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 3333344455666666666654421 22244456666677777666431122345666666
Q ss_pred cEEeCCCCCCeecC
Q 000943 878 KELCLSKNKFILLP 891 (1214)
Q Consensus 878 ~~L~L~~n~l~~lp 891 (1214)
+.|.|.+|.+..+|
T Consensus 402 E~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 402 ETLRLTGNPLAGSV 415 (490)
T ss_pred HHHhhcCCCccccc
Confidence 66666666655544
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.74 E-value=6.7e-07 Score=108.35 Aligned_cols=245 Identities=16% Similarity=0.104 Sum_probs=134.3
Q ss_pred cccccCcccchhhHHHHHHHHhh---hcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-----cC-c-cEEEEeehhhhc
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDK---ELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-----FE-G-SSFLANVREISE 256 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~-~-~~~~~~~~~~~~ 256 (1214)
...|+.+.|||+|+++|...|.. ++....++-|+|++|.|||+.++.|.+++... .+ . .+++. . ..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-C---m~ 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-G---MN 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-C---Cc
Confidence 34568899999999999998873 22333567899999999999999999876432 12 1 23333 1 22
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC---CCcEEEEEeCCCCHH--H---HHHHhcccCCCCCCcEEE
Q 000943 257 KGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR---YRRVLLIIDDAFDLK--Q---LESLAGEREWFGPGSRII 328 (1214)
Q Consensus 257 ~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~~~--~---l~~l~~~~~~~~~gs~II 328 (1214)
......+...+..++.+..........+....+...+. ....+||||+|+... . +-.|..... ..+++|+
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLi 904 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLV 904 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEE
Confidence 23445566666666533322211122223334443332 234689999998543 1 222222111 2355554
Q ss_pred E--EeCCc--------chhhhcCccceeecCCCCHHHHHHHHHHhhhcCC--CCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 329 I--TSRDE--------HLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTH--QPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 329 i--TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
| ++.+. .+...++ ...+..++++.++..+++..++.... ...+..+-+|+.++...|..-.||.++-
T Consensus 905 LIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 4 33221 1111122 12467799999999999999875321 1223334444444444455566666555
Q ss_pred hhhCCC-----ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhc
Q 000943 397 SFLCGK-----TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIA 445 (1214)
Q Consensus 397 ~~L~~~-----~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 445 (1214)
.+...+ ..+....+..++... .+.-....||.++|-++..++
T Consensus 984 rAgEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 444221 233344444333211 233344688998887766544
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.1e-09 Score=116.87 Aligned_cols=198 Identities=20% Similarity=0.122 Sum_probs=98.1
Q ss_pred cCCCCCcEEecCCCCCCCccCc--cc-ccccccceecccccCCC--CCccccCCCCcceEEEeeCccCcccCcccCCCCC
Q 000943 672 LLHKNLVSVNLKDCTDLTTLPN--KI-AMIHLRKLVLSGCSKLK--KFPEVVGSMECLLELFLDGTAIEELPSSIQLLNG 746 (1214)
Q Consensus 672 ~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 746 (1214)
.++.+|+...|.+| .+...+. .. .+++++.|+||+|-... .+-.....+++|+.|+|+.|.+...-++..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 35666777777664 2333331 11 45556666665542111 122334445555555555555442222110
Q ss_pred CcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc------CCCCccccccCCcc-ccCCcccccccCCCcEEeec
Q 000943 747 LILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV------GVESLEGLGSSRTV-LRNPESSIFSMQNFEALSFL 819 (1214)
Q Consensus 747 L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~------pl~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~ 819 (1214)
-..+++|+.|.|++|.....- ..++|+.|++..|. +..-..+..-++.|+.|+|+
T Consensus 193 ------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 193 ------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred ------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 113445555555555443210 14455555555552 21112233345556666666
Q ss_pred CCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccc-----cCCCCCCcEEeCCCCCCeecC--c
Q 000943 820 GWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSD-----IGNLCSLKELCLSKNKFILLP--E 892 (1214)
Q Consensus 820 ~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~sL~~L~L~~n~l~~lp--~ 892 (1214)
+|++.... .++....++.|..|+++.|.+.+-.+|+. ...+++|++|++..|++...+ .
T Consensus 255 ~N~li~~~--------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 255 NNNLIDFD--------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred CCcccccc--------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 66554321 12234556777777777777665455544 345677777777777776554 2
Q ss_pred ccCCCCCCCEEeec
Q 000943 893 SISCLSKLWIIDLE 906 (1214)
Q Consensus 893 ~i~~l~~L~~L~L~ 906 (1214)
.+..+++|+.|.+.
T Consensus 321 ~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 321 HLRTLENLKHLRIT 334 (505)
T ss_pred hhhccchhhhhhcc
Confidence 34445555555543
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1.3e-08 Score=121.05 Aligned_cols=175 Identities=27% Similarity=0.374 Sum_probs=87.2
Q ss_pred CceEEEecCCCCCCCCCCCCcc--cccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCc
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPE--NFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGC 661 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 661 (1214)
.+..|.+.++.+..+|....+. +|..|++++|.+..+|..+..+++|+.|++++|+.....+..+.+++|+.|++++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~- 195 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG- 195 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-
Confidence 3555556666666655544332 5566666666555555555555555555555554333332233455555555555
Q ss_pred cCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCccc
Q 000943 662 TRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSI 741 (1214)
Q Consensus 662 ~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 741 (1214)
..+..+|..+..+..|++|.+.++. ....+..+.++.++..|.+.+|.+..++..+
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~------------------------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNS------------------------IIELLSSLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCc------------------------ceecchhhhhcccccccccCCceeeeccchh
Confidence 3344444444444444444444432 2233344444455555555555555555555
Q ss_pred CCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 742 QLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 742 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
+.+++|+.|++++|... .++. ++.+.+|+.|+++++......
T Consensus 252 ~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 252 GNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence 55555555555554322 2222 555555555555555544433
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-09 Score=118.43 Aligned_cols=204 Identities=21% Similarity=0.180 Sum_probs=111.2
Q ss_pred cccccccccccccccccc--cccccccCccEEecCCCcCCCCCCC---CCCCCCccEEeccCccCCCccCc-cccCCCCC
Q 000943 604 PENFFELNMCYSRMERMW--SGIKPLSNLKIMRLCNAKNLISTPD---LTGLPNLEELDLRGCTRLRDIHP-SLLLHKNL 677 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~~l~--~~~~~L~~L~~L~Ls~~~~l~~~p~---~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L 677 (1214)
+++|+++.|.++.+...+ ...+.|++++.|||++|-...-.+- ...+|+|+.|+|+.|....-... .-..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 344555555555554444 2356667777777776643221111 34567777777776432211111 11256677
Q ss_pred cEEecCCCCCC-CccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccC--cccCCCCCCcEEecC
Q 000943 678 VSVNLKDCTDL-TTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP--SSIQLLNGLILLNLE 753 (1214)
Q Consensus 678 ~~L~L~~c~~l-~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~ 753 (1214)
+.|.|+.|..- +++-... .+|+|+.|.|.+|+.+.........++.|++|+|++|.+..++ .-++.+++|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 77777777532 1111111 5778888888877543333333445667888888888887776 557778888888887
Q ss_pred CCCCCC-cCCcc-----cCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCc--ccccccCCCcEEeecCCCCCC
Q 000943 754 KCTHLV-GLPST-----INDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPE--SSIFSMQNFEALSFLGWTLPQ 825 (1214)
Q Consensus 754 ~c~~l~-~lp~~-----l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~ 825 (1214)
.|.... ..|+. ...+++|+.|+ ++.|.+.+.+ ..+..+++|+.|.+..+.+..
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~-------------------i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLN-------------------ISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeee-------------------cccCccccccccchhhccchhhhhhcccccccc
Confidence 765432 12221 12344444444 4444443332 234455666777766666654
Q ss_pred C
Q 000943 826 S 826 (1214)
Q Consensus 826 ~ 826 (1214)
.
T Consensus 341 e 341 (505)
T KOG3207|consen 341 E 341 (505)
T ss_pred c
Confidence 3
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.70 E-value=1.4e-08 Score=113.41 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=186.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..|.+.++|.|||||||++-.+.. ++..|...+++.+...+....-+. ..+...+..... .-+.....+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~----~~~ag~~gl~~~---~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF----PTLAGALGLHVQ---PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH----HHHHhhcccccc---cchHHHHHHHHH
Confidence 468899999999999999999999 888999888887666554432222 222221211111 111234466677
Q ss_pred hCCCcEEEEEeCCCCHH-HHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeecCCCCHH-HHHHHHHHhhhcCCCC
Q 000943 293 LRYRRVLLIIDDAFDLK-QLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKLKELHDD-EALQLFCKKAFKTHQP 370 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~-~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~~ 370 (1214)
..+++.++|+||..+.- +...+...+....+.-+|+.|+|.... ...+..+.++.|+.. ++.++|...+......
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 78899999999998753 344444444444567788999997532 234567788888776 7999988776432221
Q ss_pred ---chHHHHHHHHHHHHhCCChHHHHHHHhhhCCCChHHHHHHHH----HHhcC------CCccHHHHHHHhHhCCCHHH
Q 000943 371 ---WKEYEQLSKYVVKYSGGLPLALSVLGSFLCGKTTKEWESSIQ----RLKRD------SEKDILDILQISFDGLKEIE 437 (1214)
Q Consensus 371 ---~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~~~ 437 (1214)
.......+.+|.++..|.|++|..+++..+.-...+....+. .++.. ........+..||.-|..-+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 122345677899999999999999999988866655544443 22221 13446678889999999999
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHhhCC-----CcchhhhHHhhccCceEEec---CCeEEecHHHHHHHHHHHHh
Q 000943 438 RKIFLDIACFHRGKSRDYVTKILDYCD-----FDAVIGIRVLIDKSLIEISS---GNRLWMHDLLQEMGQQIVKK 504 (1214)
Q Consensus 438 k~~fl~la~f~~~~~~~~l~~~~~~~~-----~~~~~~l~~L~~~sLi~~~~---~~~~~mHdLv~e~~~~i~~~ 504 (1214)
+..|..++.|..++..+.......... +.....+..+++++++...+ .-+++.-+-.+.|+.+...+
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888764333222221 22344567789999987653 22355555666666655544
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=2e-08 Score=119.47 Aligned_cols=194 Identities=31% Similarity=0.377 Sum_probs=148.2
Q ss_pred cccccccccccccccccccCccEEecCCCcCCCCCCCCCCCC-CccEEeccCccCCCccCccccCCCCCcEEecCCCCCC
Q 000943 610 LNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLP-NLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDL 688 (1214)
Q Consensus 610 L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~-~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l 688 (1214)
+.+..+.+......+..+..++.|++.++......+....+. +|+.|++++ +.+..+|..++.+++|+.|++.+ +.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chh
Confidence 455555554444445556777778887776555555455553 788888887 46777777788888888888888 567
Q ss_pred CccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCC
Q 000943 689 TTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTIND 767 (1214)
Q Consensus 689 ~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~ 767 (1214)
..+|... .++.|+.|+++++ .+..+|...+.+..|++|.+++|.+..++..+.++.++..|.+.++. ...++..++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~ 253 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhcc
Confidence 7777777 8889999999984 57778887777778999999999888899999999999999976654 4444778899
Q ss_pred CCCCCEEEecCCCCCCcc---CCCCccccccCCccccCCcccc
Q 000943 768 LTSLITLNLSGCSKSKNV---GVESLEGLGSSRTVLRNPESSI 807 (1214)
Q Consensus 768 L~sL~~L~ls~c~~l~~~---pl~~L~~L~l~~~~l~~~~~~~ 807 (1214)
+++|+.|++++|.....- ++.+++.|+++++.+...+...
T Consensus 254 l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 254 LSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence 999999999998765543 3788999999999888765543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.2e-06 Score=97.42 Aligned_cols=149 Identities=23% Similarity=0.341 Sum_probs=95.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHH-H
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-G 290 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~ 290 (1214)
..+.-..+||++|+||||||+.++......|... . .-..++.++.+ + ++.- +
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---s-----Av~~gvkdlr~-i------------------~e~a~~ 98 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---S-----AVTSGVKDLRE-I------------------IEEARK 98 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---c-----cccccHHHHHH-H------------------HHHHHH
Confidence 4566667999999999999999998776665421 1 01123333222 1 2222 2
Q ss_pred HHhCCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEE--EeCCcchhh--h-cCccceeecCCCCHHHHHHHHHHh
Q 000943 291 TRLRYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIII--TSRDEHLLT--T-YGVDEVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 291 ~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
.+..+++.+|++|.|+. ..|-+.|++.. ..|.-|+| ||-++...- . .....++++++|+.++..+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 33458999999999994 45677777765 46766665 666653311 1 133479999999999999999885
Q ss_pred hhcCCCCch-----HHHHHHHHHHHHhCCChH
Q 000943 364 AFKTHQPWK-----EYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 364 a~~~~~~~~-----~~~~~~~~i~~~~~GlPL 390 (1214)
+.......+ -.++..+.+++.++|---
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 433222211 124456678888888653
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=9.5e-09 Score=108.05 Aligned_cols=149 Identities=22% Similarity=0.282 Sum_probs=84.4
Q ss_pred cChhhhhcCcCeeeecccCccC--CCCccCCCCCceEEEecCCCCCCCCCCC-------------------------Ccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQL--PEGLEFLPNELRFLEWHGYPFKSLPSNF-------------------------QPE 605 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l--~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-------------------------~~~ 605 (1214)
++..+|.+ |+++.++.+.- -.++..+.+.|..+..++......|... ..+
T Consensus 208 f~l~~f~~---l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 208 FNLNAFRN---LKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred cchHHhhh---hheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 44455544 45555544321 1233344445777777665554333211 235
Q ss_pred cccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCC
Q 000943 606 NFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDC 685 (1214)
Q Consensus 606 ~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c 685 (1214)
.|.+|+|++|.|+.+.++.+-+++++.|++|+|... .+.++..+++|+.|||++| .+.++...-..+-+.++|+|.+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-
Confidence 677888888888888888888888888888888543 3344677777777777774 3333322222344555566655
Q ss_pred CCCCccCcccccccccceeccc
Q 000943 686 TDLTTLPNKIAMIHLRKLVLSG 707 (1214)
Q Consensus 686 ~~l~~lp~~~~l~~L~~L~Ls~ 707 (1214)
+.+.++...-++-+|..|++++
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred hhHhhhhhhHhhhhheeccccc
Confidence 3344443333444444444444
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=9e-07 Score=96.28 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=101.3
Q ss_pred ccccCcccchhhHHHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
...++|+|-+.. ..+..+.. ......+.+.|+|++|+|||+||+++++.+..+...+.|+.. ... .....
T Consensus 13 ~~fd~f~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~~---~~~~~- 83 (229)
T PRK06893 13 ETLDNFYADNNL-LLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SKS---QYFSP- 83 (229)
T ss_pred ccccccccCChH-HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HHh---hhhhH-
Confidence 345677754432 12222221 112234678899999999999999999987666556666651 100 00000
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH---HHHH-HHhcccCC-CCCCcEEEEEeCCc-------
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL---KQLE-SLAGEREW-FGPGSRIIITSRDE------- 334 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~-~l~~~~~~-~~~gs~IIiTTR~~------- 334 (1214)
.+.+.+. +.-+|||||++.. .+|+ .+...+.. ...|..+||+|.+.
T Consensus 84 ---------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 84 ---------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred ---------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence 1111122 3348999999853 2333 22221111 12456665554432
Q ss_pred ---chhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 335 ---HLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 335 ---~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.+...+.....+++++++.++.++++.+.+....-. -.+++.+-|++++.|..-++..+
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHH
Confidence 444444555689999999999999999988654322 22456777888888776555443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.61 E-value=1.6e-07 Score=107.09 Aligned_cols=60 Identities=28% Similarity=0.507 Sum_probs=40.4
Q ss_pred CCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 721 MECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 721 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
+.+++.|++++|.++.+| ....+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence 456777777777777777 233468888888888877777644 246777777776544433
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.58 E-value=1.9e-09 Score=118.92 Aligned_cols=275 Identities=25% Similarity=0.342 Sum_probs=151.4
Q ss_pred CccEEecCCCcCCCCCCC---CCCCCCccEEeccCccCCCccC-ccc-cCCCCCcEEecCCCCCCCccCcc-c--ccccc
Q 000943 629 NLKIMRLCNAKNLISTPD---LTGLPNLEELDLRGCTRLRDIH-PSL-LLHKNLVSVNLKDCTDLTTLPNK-I--AMIHL 700 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p~---~~~l~~L~~L~L~~c~~l~~lp-~si-~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~L 700 (1214)
.||.|.+.++.....-+- -..++|+++|.+.+|..++... .++ ..+++|++|+|..|..++...-. + .+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666654433221 3457788888888877555421 112 35677888888888777664332 2 57788
Q ss_pred cceecccccCCCC--CccccCCCCcceEEEeeCccCcccC---cccCCCCCCcEEecCCCCCCCcCC--cccCCCCCCCE
Q 000943 701 RKLVLSGCSKLKK--FPEVVGSMECLLELFLDGTAIEELP---SSIQLLNGLILLNLEKCTHLVGLP--STINDLTSLIT 773 (1214)
Q Consensus 701 ~~L~Ls~c~~l~~--lp~~~~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~L~sL~~ 773 (1214)
++|+++.|..+.. +......+..++.+.+.||.-.++- ..-+....+..+++..|..+.... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8888888876554 2223344445666655554222111 111233445556666665444322 11223566777
Q ss_pred EEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCC
Q 000943 774 LNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLT 853 (1214)
Q Consensus 774 L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~ 853 (1214)
|+.++|......++..| ..++.+|+.|-+.+|..........+ -.+.+.|+
T Consensus 299 l~~s~~t~~~d~~l~aL----------------g~~~~~L~~l~l~~c~~fsd~~ft~l-------------~rn~~~Le 349 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWAL----------------GQHCHNLQVLELSGCQQFSDRGFTML-------------GRNCPHLE 349 (483)
T ss_pred hcccCCCCCchHHHHHH----------------hcCCCceEEEeccccchhhhhhhhhh-------------hcCChhhh
Confidence 77777665444331111 23567788888887775433211110 23466788
Q ss_pred EEecCCCCCCC-CCcccccCCCCCCcEEeCCCCCCe------ecCcccCCCCCCCEEeecCCcCCCccc----CCccccc
Q 000943 854 KLDLSDCNLGE-GAIPSDIGNLCSLKELCLSKNKFI------LLPESISCLSKLWIIDLEECKRLQSLS----QLPSNIE 922 (1214)
Q Consensus 854 ~L~Ls~~~l~~-~~lp~~l~~l~sL~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~C~~L~~lp----~lp~sL~ 922 (1214)
.|++..|.... +.+-..-.+++.|+.|.|++|.+. .+..+-..+..|+.|.|++|+.+..-. ..-++|+
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 88888886533 223333456778888888877432 223344556778888888887654321 1113455
Q ss_pred eeeecCcccc
Q 000943 923 EVRLNGCASL 932 (1214)
Q Consensus 923 ~L~l~~C~~L 932 (1214)
.+++.+|...
T Consensus 430 ri~l~~~q~v 439 (483)
T KOG4341|consen 430 RIELIDCQDV 439 (483)
T ss_pred eeeeechhhh
Confidence 5555555433
No 55
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=5.3e-06 Score=98.69 Aligned_cols=174 Identities=22% Similarity=0.317 Sum_probs=104.1
Q ss_pred ccCcccchhhHHH---HHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 190 FKDLVGIDSRWKK---LRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 190 ~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
.+.+||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|. .+. . ...+... .++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~-a----~~~~~~~-ir~ 79 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS-A----VTSGVKD-LRE 79 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-c----ccccHHH-HHH
Confidence 4678998887665 7776643 34567889999999999999999987654431 111 0 0111111 111
Q ss_pred HHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEE--EeCCcc--hhhh
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIII--TSRDEH--LLTT 339 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIi--TTR~~~--v~~~ 339 (1214)
++.. ... ...+++.+|++|+++.. .+.+.+..... .|..++| ||.+.. +...
T Consensus 80 ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 VIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 2111 111 12457889999999954 44555555442 3455554 334321 1111
Q ss_pred c-CccceeecCCCCHHHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHHhCCChHHHHHH
Q 000943 340 Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQPW-KEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
+ .....+++.+++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1 2235889999999999999988653311111 222456778999999998765433
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=3.4e-06 Score=92.00 Aligned_cols=173 Identities=20% Similarity=0.245 Sum_probs=101.2
Q ss_pred ccCccc--chhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 190 FKDLVG--IDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 190 ~~~~vG--r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
.++|++ .+..++++..++. ....+.|.|+|++|+|||+||+.+++.........+++. ....... ...+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHHH
Confidence 345652 3445666776653 234578899999999999999999987654444444443 2221100 0011
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH---H-HHHHhcccCC-CCCCcEEEEEeCCcc-------
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK---Q-LESLAGEREW-FGPGSRIIITSRDEH------- 335 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IIiTTR~~~------- 335 (1214)
...+.. .-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 ----------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 85 ----------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred ----------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 111222 2389999998543 1 2333322111 123458899887532
Q ss_pred --hhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 336 --LLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 336 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
+...+.....+++++++.++...++...+-....+ -..+..+.+++.+.|+|..+..+.
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 11122223578999999999999998765322211 123556778888999987776554
No 57
>PTZ00202 tuzin; Provisional
Probab=98.40 E-value=3.1e-05 Score=87.81 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=114.8
Q ss_pred HhhccCCcccc--cch-hHHHHHHHhhhhcccCccc------cccccccCcccchhhHHHHHHHHhhhc-CCcEEEEEEe
Q 000943 152 VANISGWELKD--RNE-SEFIVDIVKDILKMSSKIP------AKFDIFKDLVGIDSRWKKLRFLIDKEL-NGVRMIGICG 221 (1214)
Q Consensus 152 ~a~~~g~~~~~--~~e-~~~i~~i~~~i~~~~~~~~------~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G 221 (1214)
++..-||.+++ +.+ +-..+-.++.. .+..++ ..|.....|+||++++++|...|...+ ...+++.|.|
T Consensus 216 v~~vF~wn~r~y~rqQR~~Ql~~Av~tL--~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG 293 (550)
T PTZ00202 216 VASVFGWNFKNYRTQQRSYQLKVAVSTL--TQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTG 293 (550)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--hcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEEC
Confidence 33344676665 222 22344445555 333322 346678899999999999999997433 3457999999
Q ss_pred cCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh-----C-C
Q 000943 222 MGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-----R-Y 295 (1214)
Q Consensus 222 ~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-----~-~ 295 (1214)
++|+|||||++.+..... ...++.+.+ +..+++..++.++. ..... .-.+....|.+.+ . +
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALG-V~p~~--~k~dLLrqIqeaLl~~~~e~G 360 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALG-VPNVE--ACGDLLDFISEACRRAKKMNG 360 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcC-CCCcc--cHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999886553 235555432 56788888888844 32211 1122233333222 3 6
Q ss_pred CcEEEEEeCCC--CHH----HHHHHhcccCCCCCCcEEEEEeCCcchhhhc---CccceeecCCCCHHHHHHHHHHhh
Q 000943 296 RRVLLIIDDAF--DLK----QLESLAGEREWFGPGSRIIITSRDEHLLTTY---GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 296 kr~LlVLDdv~--~~~----~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
++.+||+-=-+ +.. +.-.|+-. ..-|+|++----+.+.... .--.-|-++.++.++|.++-.+..
T Consensus 361 rtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 361 ETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 77787775322 221 22223322 3457777655433322111 112478899999999999875543
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=1.9e-07 Score=95.51 Aligned_cols=87 Identities=25% Similarity=0.387 Sum_probs=18.8
Q ss_pred CCCCCCCCCcccccccccccccccccccccc-cccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccc-c
Q 000943 595 FKSLPSNFQPENFFELNMCYSRMERMWSGIK-PLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSL-L 672 (1214)
Q Consensus 595 l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~-~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si-~ 672 (1214)
++..|...++.++++|+|.+|.|..+. .+. .+.+|+.|+|++|.. ..++.+..+++|++|++++| .+..+...+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNN-RISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCC-CCCccccchHH
Confidence 344444445566677777777776653 344 466777777777743 34556666667777777663 344443333 2
Q ss_pred CCCCCcEEecCC
Q 000943 673 LHKNLVSVNLKD 684 (1214)
Q Consensus 673 ~l~~L~~L~L~~ 684 (1214)
.+++|+.|+|++
T Consensus 86 ~lp~L~~L~L~~ 97 (175)
T PF14580_consen 86 NLPNLQELYLSN 97 (175)
T ss_dssp H-TT--EEE-TT
T ss_pred hCCcCCEEECcC
Confidence 345555555554
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=1.1e-08 Score=113.09 Aligned_cols=261 Identities=22% Similarity=0.253 Sum_probs=161.9
Q ss_pred cccccCccEEecCCCcCCCCCC--CC-CCCCCccEEeccCccCCCccCc--cccCCCCCcEEecCCCCCCCcc--Cccc-
Q 000943 624 IKPLSNLKIMRLCNAKNLISTP--DL-TGLPNLEELDLRGCTRLRDIHP--SLLLHKNLVSVNLKDCTDLTTL--PNKI- 695 (1214)
Q Consensus 624 ~~~L~~L~~L~Ls~~~~l~~~p--~~-~~l~~L~~L~L~~c~~l~~lp~--si~~l~~L~~L~L~~c~~l~~l--p~~~- 695 (1214)
..+++|+.+|.+.+|..++... .+ ..+++|++|+|..|.+++...- -...+++|++|+++.|..++.- -...
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4577888888888887544322 12 3478899999999887776432 2235789999999999877761 1111
Q ss_pred ccccccceecccccCCCC--CccccCCCCcceEEEeeCccC-cccCcc--cCCCCCCcEEecCCCCCCCcCC--cccCCC
Q 000943 696 AMIHLRKLVLSGCSKLKK--FPEVVGSMECLLELFLDGTAI-EELPSS--IQLLNGLILLNLEKCTHLVGLP--STINDL 768 (1214)
Q Consensus 696 ~l~~L~~L~Ls~c~~l~~--lp~~~~~l~~L~~L~L~~~~i-~~lp~~--i~~l~~L~~L~L~~c~~l~~lp--~~l~~L 768 (1214)
+.+.|+.+.+.||..++. +-..-+.+.-+.++++..|.. +...-+ -..+..|+.|+.++|......+ .-..+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 566688888888865432 212223344455666555532 222111 2347789999999998765443 223457
Q ss_pred CCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cC
Q 000943 769 TSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LL 847 (1214)
Q Consensus 769 ~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~ 847 (1214)
.+|+.|.+++|..+....+..|. .+++.|+.+++.+|...... .+.+ -.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~----------------rn~~~Le~l~~e~~~~~~d~--------------tL~sls~ 369 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLG----------------RNCPHLERLDLEECGLITDG--------------TLASLSR 369 (483)
T ss_pred CceEEEeccccchhhhhhhhhhh----------------cCChhhhhhcccccceehhh--------------hHhhhcc
Confidence 89999999999976655422111 24566677776666544321 1122 33
Q ss_pred CCCCCCEEecCCCCCCCCC----cccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEeecCCcCCCcc
Q 000943 848 GLCSLTKLDLSDCNLGEGA----IPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIIDLEECKRLQSL 914 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~----lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~C~~L~~l 914 (1214)
+++.|+.|.|++|.+.... +...-..+..|+.|.|++|..+ ..-..+..+++|+.+++.+|.....-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 5677888888888653221 1222345667888888888654 33346677888888888888766543
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=2.2e-08 Score=108.45 Aligned_cols=231 Identities=23% Similarity=0.194 Sum_probs=126.0
Q ss_pred CCCCCCccEEeccCccCCCc----cCccccCCCCCcEEecCCCC---CCCccCccc--------ccccccceecccccCC
Q 000943 647 LTGLPNLEELDLRGCTRLRD----IHPSLLLHKNLVSVNLKDCT---DLTTLPNKI--------AMIHLRKLVLSGCSKL 711 (1214)
Q Consensus 647 ~~~l~~L~~L~L~~c~~l~~----lp~si~~l~~L~~L~L~~c~---~l~~lp~~~--------~l~~L~~L~Ls~c~~l 711 (1214)
+..+..+.+|+|+||+.-.+ +...+.+.+.|+..++++-- -...+|..+ ..+.|++|+||.|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566788888888654322 22334455677777776521 111222211 2334555555554322
Q ss_pred CCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCc-------------CCcccCCCCCCCEEEecC
Q 000943 712 KKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVG-------------LPSTINDLTSLITLNLSG 778 (1214)
Q Consensus 712 ~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-------------lp~~l~~L~sL~~L~ls~ 778 (1214)
...+.. +-.-+.+...|++|.|.+|..... ...-+.+-+.|+++....
T Consensus 106 ~~g~~~-------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 106 PKGIRG-------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred ccchHH-------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 222211 112233344555555555443211 011133445666666665
Q ss_pred CCCCCccC----------CCCccccccCCccccCC-----cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccC
Q 000943 779 CSKSKNVG----------VESLEGLGSSRTVLRNP-----ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRL 843 (1214)
Q Consensus 779 c~~l~~~p----------l~~L~~L~l~~~~l~~~-----~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~l 843 (1214)
|..-. .+ .+.|+.+.+..|.|..- ...+..+++|+.|++..|.+...-.. .+
T Consensus 167 Nrlen-~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------------~L 233 (382)
T KOG1909|consen 167 NRLEN-GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------------AL 233 (382)
T ss_pred ccccc-ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH------------HH
Confidence 55322 21 45666666666665432 34567889999999988877542110 01
Q ss_pred C-CcCCCCCCCEEecCCCCCCCCCcc---ccc-CCCCCCcEEeCCCCCCe-----ecCcccCCCCCCCEEeecCCc
Q 000943 844 P-SLLGLCSLTKLDLSDCNLGEGAIP---SDI-GNLCSLKELCLSKNKFI-----LLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 844 p-~~~~l~~L~~L~Ls~~~l~~~~lp---~~l-~~l~sL~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
. .++.+++|+.|++++|.+....-- ..+ ...|+|+.|.|.+|.++ .+-.++...+.|+.|+|++|.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1 155667899999999988653221 111 34788999999999876 334456667778888888764
No 61
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=1.5e-05 Score=92.67 Aligned_cols=199 Identities=18% Similarity=0.182 Sum_probs=106.9
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHH-H
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQ-L 267 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~-l 267 (1214)
.+.++|++..++.+..++..+ ..+.+.++|++|+||||+|+++++.+... +...+...+........ ...+... .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 90 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG-KKYLVEDPR 90 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc-hhhhhcCcc
Confidence 467899999999999888643 34467899999999999999999876433 22222222222111000 0000000 0
Q ss_pred HHhhhcCC-CCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCc-chhh
Q 000943 268 LSQLLKLP-DSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDE-HLLT 338 (1214)
Q Consensus 268 l~~ll~~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~ 338 (1214)
........ .......+.....++... ...+-+||+||++... ....+...+......+++|+||... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 000000111111111111 1344589999998542 2333333332234567788887543 2222
Q ss_pred hc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 339 TY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
.+ .....+++.+++.++..+++...+...... -..+.+..++++++|.+-.+.
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22 223578899999999999998876433322 124567788889988765543
No 62
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=2.6e-07 Score=94.55 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=24.3
Q ss_pred cCcCeeeecccCccCCC--CccCCCCCceEEEecCCCCCCCCCCCCccccccccccccccccccccc-ccccCccEEecC
Q 000943 560 KMTNLRMLTIGNVQLPE--GLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGI-KPLSNLKIMRLC 636 (1214)
Q Consensus 560 ~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~L~~L~~L~Ls 636 (1214)
+..++|.|++.++.++. .+.....+|+.|++++|.++.++..-.+.+|++|++++|.|+.+..++ ..+++|+.|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 33455666666666542 222212345666666666665554335555555566666555554433 245555555555
Q ss_pred CCcCCC--CCCCCCCCCCccEEeccCc
Q 000943 637 NAKNLI--STPDLTGLPNLEELDLRGC 661 (1214)
Q Consensus 637 ~~~~l~--~~p~~~~l~~L~~L~L~~c 661 (1214)
+|+.-. .+..++.+++|++|+|.+|
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCC
Confidence 554211 1222344455555555554
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=8.6e-06 Score=98.03 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=110.8
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc--ccCccEEEEeehh-hhc--cCCHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH--EFEGSSFLANVRE-ISE--KGGLISL 263 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~-~~~--~~~~~~l 263 (1214)
..+.++|-+...+.|...+..+ .-...+.++|++|+||||+|+.+++.+.. .+...|+.+.... +.. ..++..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3467899998888888887643 23456799999999999999999987642 2222333321000 000 0000000
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchhhh
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLLTT 339 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~ 339 (1214)
-........++.+....+.. -..+++-++|+|+++.. +.+..+...+....+...+|++|.. ..+...
T Consensus 91 --------~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 91 --------DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred --------cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000001111111111111 01246678999999854 4466666655544455666666644 333332
Q ss_pred c-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 340 Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
. .....+++.+++.++..+++.+.+....... ..+.+..|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2 2346899999999999999988775443221 2456778999999988543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.32 E-value=2.5e-06 Score=97.50 Aligned_cols=40 Identities=35% Similarity=0.732 Sum_probs=19.6
Q ss_pred CCcEEecCCCCCCCccCcccccccccceecccccCCCCCcc
Q 000943 676 NLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPE 716 (1214)
Q Consensus 676 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~ 716 (1214)
+|+.|.+++|..++.+|..+ ..+|++|.+++|..+..+|+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 34555555555555554433 23555555555544444443
No 65
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.2e-06 Score=86.15 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=76.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
+++.|.|+.|+||||+++++++... .-...+++. .... .. .. .. . .+ ..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~------~~-~~-~~-~-----------~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP------RD-RR-LA-D-----------PD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH------HH-HH-Hh-h-----------hh-hHHHHHHhhc
Confidence 6899999999999999999988665 223344443 2111 00 00 00 0 00 1233344344
Q ss_pred CCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhhc------CccceeecCCCCHHHH
Q 000943 295 YRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTTY------GVDEVLKLKELHDDEA 356 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~------~~~~~~~l~~L~~~ea 356 (1214)
.++.+|+||+|+...+|......+...++..+|++|+.....+..- +....+++.+|+-.|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5788999999999888877766655445678999999986555321 2234688999987763
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=2.2e-06 Score=90.23 Aligned_cols=50 Identities=32% Similarity=0.498 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 192 DLVGIDSRWKKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 233457899999999999999999999988776
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=2e-05 Score=95.71 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=107.0
Q ss_pred cccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
....++|.+..++++..++..- ....+.+.|+|++|+||||+|+++++.+. ++ +...+. +.... .....+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielna---sd~r~-~~~i~~ 83 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNA---SDQRT-ADVIER 83 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcc---ccccc-HHHHHH
Confidence 3467999999999999998742 22368899999999999999999998763 22 111111 11111 122222
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH------HHHHHhcccCCCCCCcEEEEEeCCcc-hhh-
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK------QLESLAGEREWFGPGSRIIITSRDEH-LLT- 338 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~- 338 (1214)
++....... .....++-+||+|+++... .+..+..... ..+..||+|+.+.. ...
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 222211100 0011367899999998642 2444443332 23445666665432 111
Q ss_pred hc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 339 TY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
.+ .....+++.+++.++....+...+....... ..+....|++.++|..-.+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 11 2345789999999999999888775433321 24567889999998765543
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=4.2e-05 Score=88.28 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=105.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
.-.+++|+++.++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+........++. +. .+...+.. ...+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHHHH
Confidence 3467899999999999888643 3445799999999999999999987643221111221 10 01111111 111111
Q ss_pred HhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-Cccc
Q 000943 269 SQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVDE 344 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~ 344 (1214)
........ .-...+-++|+|+++.. +....+........+.+++|+++... .+.... ....
T Consensus 90 ~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 90 KEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11110000 00123568999999854 23344444433345567777777442 222211 1234
Q ss_pred eeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 345 VLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
.+++.+++.++....+...+...... -..+.+..+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 78999999999999998877544322 1245677889999998755
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=5e-05 Score=87.20 Aligned_cols=180 Identities=15% Similarity=0.214 Sum_probs=104.9
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc-ccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH-EFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
....++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+.. .|...+.-.+ .+...+.. ..++.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~-~vr~~ 84 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGID-VVRNK 84 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHH-HHHHH
Confidence 3467899988888888777532 3445779999999999999999987633 3332211111 11112222 12222
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-Ccc
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVD 343 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~ 343 (1214)
+........ . .-.++.-++|||+++... ....+..........+++|+++... .+.... ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 211100000 0 002356789999998642 3334443333335667777777543 222222 123
Q ss_pred ceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 344 EVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
..++++++++++..+.+...+-...... ..+....+++.++|..-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 5789999999999999888774433221 13567788899988763
No 70
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=0.00012 Score=85.44 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=108.7
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ....+.-....++.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRKCIICKEIE 83 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHh
Confidence 3467899999999998888643 2346778999999999999999998764211100 00000000000000
Q ss_pred Hh----hhcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCc-ch
Q 000943 269 SQ----LLKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDE-HL 336 (1214)
Q Consensus 269 ~~----ll~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v 336 (1214)
.. +...........++ +..+.+.+ .+++-++|+|+++... .+..+...+....+..++|++|.+. .+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 00 00000000000111 11111111 2356699999999654 3556665555445667777777553 23
Q ss_pred hhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 337 LTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
.... .....+++.+++.++..+.+...+...... -.++.+..|++.++|.|-.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 2222 223689999999999999988876443321 1235667789999998854
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.26 E-value=9.5e-06 Score=95.00 Aligned_cols=174 Identities=16% Similarity=0.209 Sum_probs=101.7
Q ss_pred cccCcccchhhHHHHHHHHhhh-----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE-----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK 257 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 257 (1214)
..+++.|++..++++.+.+... -...+-|.++|++|+|||++|+++++.....| +...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~------ 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV------ 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc------
Confidence 3467899999999998877521 12245689999999999999999998775543 2100
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCC
Q 000943 258 GGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREW 320 (1214)
Q Consensus 258 ~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1214)
...+....... .......+ ...-...+.+|+||+++... .+..+......
T Consensus 189 --~~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 --GSELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred --hHHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 01111111100 00111111 11223467899999987531 12333322221
Q ss_pred C--CCCcEEEEEeCCcchhh-----hcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 321 F--GPGSRIIITSRDEHLLT-----TYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 321 ~--~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
+ ..+.+||.||....... ....+..++++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1 24677888887543222 1233568999999999999999988755433221 01345666776654
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.9e-05 Score=85.82 Aligned_cols=201 Identities=15% Similarity=0.070 Sum_probs=111.0
Q ss_pred cccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc--CccEEEEeehhhhccCCHHHHH
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF--EGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
|....+++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+-.+- ............ ...+.....
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCChHH
Confidence 344578999999888898888653 2345688999999999999999998663211 110000000000 000000111
Q ss_pred HHHHHhh------hc----CCCC---CcccccchHHHHHHHhC-----CCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 265 KQLLSQL------LK----LPDS---GIWDVYDGLKMIGTRLR-----YRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 265 ~~ll~~l------l~----~~~~---~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+.+.... +. .... ..-.+++ +..+.+.+. +++.++|+|+++.. .....|...+....++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000 00 0000 0001111 222223322 46779999999854 3455555544433456
Q ss_pred cEEEEEeCCcc-hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 325 SRIIITSRDEH-LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 325 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
..+|++|.+.. +.... .....+.+.+++.+++.+++...... .. .+....++..++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 77777777653 32222 22468999999999999999876411 11 1222678999999998665543
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=1.8e-05 Score=82.69 Aligned_cols=178 Identities=24% Similarity=0.246 Sum_probs=98.7
Q ss_pred ccccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
..-++|||-+.-++.+.-++... ......+.+||++|.||||||..+++.....|. +.. ..... ...++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~---k~~dl- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIE---KAGDL- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHHH-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhh---hHHHH-
Confidence 34579999999888877666522 234677889999999999999999998876653 111 00000 00111
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCC--------CCCC----------
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREW--------FGPG---------- 324 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~--------~~~g---------- 324 (1214)
.. +...+ .++-+|.+|.++... +-+.|.+.... .+++
T Consensus 93 ---------------------~~-il~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 ---------------------AA-ILTNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---------------------HH-HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---------------------HH-HHHhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 11112 245578889999653 33333333211 1222
Q ss_pred -cEEEEEeCCcchhhhcCcc--ceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhh
Q 000943 325 -SRIIITSRDEHLLTTYGVD--EVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSF 398 (1214)
Q Consensus 325 -s~IIiTTR~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~ 398 (1214)
+-|=.|||...+...+... -..+++..+.+|-.+...+.+..-.. +-.++.+.+|++++.|-|--..-+-..
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3345788876555444332 34589999999999999888744333 233577889999999999654444333
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=7.6e-05 Score=90.95 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=111.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+++||.+..++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+...-... ....+.-.....+.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---------SQPCGVCRACREID 83 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---------CCCCcccHHHHHHh
Confidence 3478999999999999888643 2345667999999999999999988663210000 00000000001110
Q ss_pred H----hhhcCCCCCcccccchHHHHHHH----hCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCcchh-
Q 000943 269 S----QLLKLPDSGIWDVYDGLKMIGTR----LRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDEHLL- 337 (1214)
Q Consensus 269 ~----~ll~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~v~- 337 (1214)
. .++.........+++..+.+... ..++.-++|||+++... .+..|+..+.......++|+||.+.+-.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 0 00000000000111111111111 12455688999999654 3666666554445678888888775332
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVL 395 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 395 (1214)
... .-...+.++.++.++..+.+.+.+...... -..+..+.|++.++|.. -|+..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 223689999999999999998876433221 22456777889998865 455443
No 75
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00015 Score=83.68 Aligned_cols=281 Identities=17% Similarity=0.154 Sum_probs=158.3
Q ss_pred ccccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCcc--EEEEeehhhhccCCHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGS--SFLANVREISEKGGLISL 263 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~~~~~~~~~l 263 (1214)
..|+.+.+|+++++++...|... +..+.-+.|+|.+|.|||+.++.+++++....... +++. +....+..++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHH
Confidence 44566999999999999888732 22233488999999999999999999887664443 5554 2334566788
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhC--CCcEEEEEeCCCCHH-----HHHHHhcccCCCCCCcEE--EEEeCCc
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK-----QLESLAGEREWFGPGSRI--IITSRDE 334 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~I--IiTTR~~ 334 (1214)
..+++.++...+... ....+....+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.
T Consensus 90 ~~~i~~~~~~~p~~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 90 LSKILNKLGKVPLTG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHcCCCCCCC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 888888754332222 233344555555554 588999999998542 233333322212 3443 3333332
Q ss_pred chh--------hhcCccceeecCCCCHHHHHHHHHHhhh---cCCCCchHHHHHHHHHHHHhCC-ChHHHHHHHhhh--C
Q 000943 335 HLL--------TTYGVDEVLKLKELHDDEALQLFCKKAF---KTHQPWKEYEQLSKYVVKYSGG-LPLALSVLGSFL--C 400 (1214)
Q Consensus 335 ~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G-lPLAl~~lg~~L--~ 400 (1214)
... ..++. ..+..++-+.+|-...+..++- ......++.-+++..++...+| --.|+..+-.+. +
T Consensus 167 ~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 222 22222 3477889999999999988763 3333333434444444445454 334444333222 1
Q ss_pred C-----C-ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCCCCHHHH----HHHHhhCCC---cc
Q 000943 401 G-----K-TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRGKSRDYV----TKILDYCDF---DA 467 (1214)
Q Consensus 401 ~-----~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l----~~~~~~~~~---~~ 467 (1214)
. + +.+.-..+.... -.....-....|+.++|..+..++....+.....+ ..+....+. ..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 0 122222221111 12233445788999998887776655333333332 222222233 22
Q ss_pred hhhhHHhhccCceEEe
Q 000943 468 VIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 468 ~~~l~~L~~~sLi~~~ 483 (1214)
...+..|...++|...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3446677777777754
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5.5e-05 Score=91.25 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=109.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....+||.+...+.|..++..+ .-...+.++|+.|+||||+|+.+++.+...... . . ...+.-...+.+.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~----~-~----~pCg~C~sC~~I~ 82 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGV----T-S----TPCEVCATCKAVN 82 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCC----C-C----CCCccCHHHHHHh
Confidence 3468999999999999888743 234678899999999999999998866321100 0 0 0000000000000
Q ss_pred H----hhhcCC---CCCcccccchHHHHH-HHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcchhh
Q 000943 269 S----QLLKLP---DSGIWDVYDGLKMIG-TRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHLLT 338 (1214)
Q Consensus 269 ~----~ll~~~---~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~ 338 (1214)
. .++... .....++.+.+..+. .-..+++-++|+|+|+.. .....|...+.....+.++|++|.+..-..
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0 000000 000111111111111 011356678999999965 345556555544456678888777642221
Q ss_pred -h-cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 339 -T-YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 339 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
. ......+++.+++.++..+.+...+...... ...+....|++.++|.+-.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 1 1234689999999999999998876443322 2245667789999997743
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.21 E-value=3.5e-05 Score=84.02 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred ccCcccchhh-HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 190 FKDLVGIDSR-WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 190 ~~~~vGr~~~-l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
.++|++.... +..+..+.. + .....+.|+|..|+|||.||+++++....+...+.|+. ..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH
Confidence 4567665543 333333332 1 22356999999999999999999987766554555654 111 000000
Q ss_pred HhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH---HH-HHHhcccCC-CCCCcEEEEEeCCc---------
Q 000943 269 SQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK---QL-ESLAGEREW-FGPGSRIIITSRDE--------- 334 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l-~~l~~~~~~-~~~gs~IIiTTR~~--------- 334 (1214)
. ..+.+ .+.-+|||||++... .+ +.+...... ...|..||+|++..
T Consensus 86 ------------------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 ------------------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ------------------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 0 11111 233589999998431 12 222221111 13467799999863
Q ss_pred chhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 335 HLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 335 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
.+...+.....+++++++.++..+++.+++....-. -.++....|++.+.|-.-.+
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 111222234588999999999999999877543221 22455667777777654443
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=7.6e-05 Score=87.69 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=108.4
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCc---cEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG---SSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
....+||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...-.. .|..+ .....+..
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i~~ 86 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEITK 86 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHHHc
Confidence 34678999988888888886432 23567899999999999999999866432110 01100 00001000
Q ss_pred HHHHhhhcC---CCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchhh
Q 000943 266 QLLSQLLKL---PDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLLT 338 (1214)
Q Consensus 266 ~ll~~ll~~---~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~ 338 (1214)
.....+... ......++.+..+.+.. ...++.-++|+|+++.. +.+.+|+..+........+|++|.. ..+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 000000000 00011111111222211 12356779999999954 4567776655443445555555544 33333
Q ss_pred hc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 339 TY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
.. .....|.+.+++.++..+.+.+.+...... -..+....|++.++|.+-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 32 223579999999999999988876433221 224567889999999873
No 79
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=3.3e-05 Score=84.24 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=97.0
Q ss_pred cccCcc-cchhhH-HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 189 IFKDLV-GIDSRW-KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 189 ~~~~~v-Gr~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
..++|+ |.+.+. ..+.++.. .....+.+.|+|..|+|||+||+++++.....-....++. .... ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~---------~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP---------LLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh---------HHH
Confidence 345555 554443 33444433 2234567889999999999999999986643322334443 1110 000
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCC-CCCc-EEEEEeCCcchhh----
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWF-GPGS-RIIITSRDEHLLT---- 338 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-~IIiTTR~~~v~~---- 338 (1214)
+ .. ....-+||+||++.. .+.+.+....... ..+. .||+|++......
T Consensus 85 -~----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 85 -F----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred -H----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 0 01 123347889999754 2222332222111 2344 3666666432111
Q ss_pred ----hcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000943 339 ----TYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFL 399 (1214)
Q Consensus 339 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 399 (1214)
.+.....++++++++++-..++.+.+-..... -.++..+.+++...|++..+..+...+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11223588999999998777777654322221 224567778888999998877665543
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=0.00013 Score=90.71 Aligned_cols=197 Identities=19% Similarity=0.159 Sum_probs=112.4
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-c-Cc-cEEEEee-hhhhccCCHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-F-EG-SSFLANV-REISEKGGLISLQ 264 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~-~~~~~~~~~~~l~ 264 (1214)
....+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... . .. .|..+.. ........ ..
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~-~D-- 89 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF-VD-- 89 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC-ce--
Confidence 3468999999999998888643 234556899999999999999999876432 1 00 0111000 00000000 00
Q ss_pred HHHHHhhhcCC-CCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhh
Q 000943 265 KQLLSQLLKLP-DSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTT 339 (1214)
Q Consensus 265 ~~ll~~ll~~~-~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~ 339 (1214)
+.. +... ...+.++.+....+.. -..+++-++|||+++.. +....|+..+.......++|++|.+. .+...
T Consensus 90 ---viE-idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 90 ---LIE-VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred ---EEE-eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 000 0000 0111111111111111 12467789999999954 45666666555445667777666553 33322
Q ss_pred c-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 340 Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
. .....|++.+|+.++..+++.+.+-.... ....+.++.|++.++|.|- |+..+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 22368999999999999999887643221 1224567789999999885 44443
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=8.3e-05 Score=81.14 Aligned_cols=150 Identities=18% Similarity=0.235 Sum_probs=88.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL 293 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L 293 (1214)
...+.|+|..|+|||.||+++++.+..+-..++|+. ..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~-------------~~~~---------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAE-------------LLDR---------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHH-------------HHhh---------------hHHHHHhh
Confidence 367889999999999999999987765444555654 111 1100 01222333
Q ss_pred CCCcEEEEEeCCCCH---HHHHH-HhcccC-CCCCCcEEEEEeCCcc---------hhhhcCccceeecCCCCHHHHHHH
Q 000943 294 RYRRVLLIIDDAFDL---KQLES-LAGERE-WFGPGSRIIITSRDEH---------LLTTYGVDEVLKLKELHDDEALQL 359 (1214)
Q Consensus 294 ~~kr~LlVLDdv~~~---~~l~~-l~~~~~-~~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 359 (1214)
.+-. +||+||++.. .+|+. +...+. ....|.+||+|++... +...+....++++++++.++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3323 6788999732 23322 222221 1135678899887531 111122335789999999999999
Q ss_pred HHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 360 FCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 360 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
+..++....-. -.+++..-+++++.|..-++..+
T Consensus 175 l~~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGLH--LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 98766443221 12466677777777765554433
No 82
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.17 E-value=8.1e-06 Score=80.56 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=70.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc-----cCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE-----FEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLK 287 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~ 287 (1214)
+.+.+.|+|.+|+|||++++.+++..... -...+|+. .........+...++..+... .....+..+..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLP-LKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-S-SSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCcc-ccccCCHHHHHH
Confidence 35788999999999999999999876543 22334444 233346788888888885433 222234445556
Q ss_pred HHHHHhCCCc-EEEEEeCCCCH-H--HHHHHhcccCCCCCCcEEEEEeCC
Q 000943 288 MIGTRLRYRR-VLLIIDDAFDL-K--QLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 288 ~l~~~L~~kr-~LlVLDdv~~~-~--~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
.+.+.+...+ .+||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666666544 59999999876 3 2444433322 677788887765
No 83
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.16 E-value=1.8e-05 Score=79.37 Aligned_cols=123 Identities=19% Similarity=0.170 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhc
Q 000943 194 VGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLK 273 (1214)
Q Consensus 194 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~ 273 (1214)
+|++..+.++...+.. ...+.+.|+|.+|+|||++|+++++.+...-...+++. ..+..... .. ...... .
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~---~~-~~~~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL---VV-AELFGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh---HH-HHHhhh-h-
Confidence 4788888888888754 24567889999999999999999997753322333332 22211110 00 000000 0
Q ss_pred CCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--H---HHHHHhcccCCC---CCCcEEEEEeCCcc
Q 000943 274 LPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--K---QLESLAGEREWF---GPGSRIIITSRDEH 335 (1214)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~---~l~~l~~~~~~~---~~gs~IIiTTR~~~ 335 (1214)
............++.++|+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457889999999954 2 233333332221 36788888888653
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.7e-05 Score=86.57 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=108.2
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-----cCccEEEEeehhhhccCCHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-----FEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
+.++|-+...+.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ++....+... .....++.+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 46789888888888888643 345677899999999999999999876322 1111111100 001111111 11
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCC--CHHHHHHHhcccCCCCCCcEEEEEeCCcchh-hhc-C
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAF--DLKQLESLAGEREWFGPGSRIIITSRDEHLL-TTY-G 341 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~ 341 (1214)
++...+.. .-..+++-++|+|+++ +...+..|...+....+++.+|++|.+...+ +.. .
T Consensus 80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 12221100 0012455567777776 4455777777776667788999888765322 221 2
Q ss_pred ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 342 VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
....+++.++++++....+.+... . .. .+.++.++.+++|.|..+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~-~~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-D-IK----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 236899999999999888866542 1 11 234667899999998665433
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00026 Score=84.77 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=105.3
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc----cC-----------------ccEE
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE----FE-----------------GSSF 247 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~~~ 247 (1214)
..+.+||.+...+.|...+..+ .-...+.++|++|+||||+|+.+++.+... +. ....
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3467999988877777776533 223567899999999999999998865321 00 0001
Q ss_pred EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 248 LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+. .+...++..+ +++. +.+.. -..+++-++|+|+++.. +....|...+....+.
T Consensus 91 l~----aa~~~gid~i-R~i~------------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 91 LD----AASNRGIDEI-RKIR------------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred Ee----CcccCCHHHH-HHHH------------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 10 0001111111 0111 11110 12346679999999865 3355555554433344
Q ss_pred cEEEEEeCC-cchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCC-ChHHHHHHHh
Q 000943 325 SRIIITSRD-EHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGG-LPLALSVLGS 397 (1214)
Q Consensus 325 s~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLAl~~lg~ 397 (1214)
..+|++|.+ ..+.... .....+++.+++.++....+...+...... -..+....|+++++| .+.|+..+..
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555545543 3333322 223588999999999999988877443322 123556778887765 4667666654
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.12 E-value=0.00011 Score=92.03 Aligned_cols=170 Identities=23% Similarity=0.304 Sum_probs=99.0
Q ss_pred cccCcccchhhHH---HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWK---KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..+.++|.+..+. .+...+.. +....+.++|++|+||||+|+.+++.....|. .+. .. ..++..+ +
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~--~~~i~di-r 94 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AV--LAGVKDL-R 94 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hh--hhhhHHH-H
Confidence 3467899988774 45555543 34566789999999999999999987655441 111 00 0111111 1
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHh--CCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEE--eCCcc--hh
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRL--RYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIIT--SRDEH--LL 337 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiT--TR~~~--v~ 337 (1214)
+. .....+.+ .+++.+|||||++. ..+.+.|.... ..|..++|+ |.+.. +.
T Consensus 95 ~~------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 95 AE------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred HH------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 11 11111111 24678999999984 34556666543 345555553 33321 11
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcC-----CCCchHHHHHHHHHHHHhCCChH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKT-----HQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
... .....+.+++|+.++...++.+.+-.. .....-.++....|++++.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 123578999999999999998766310 11112224566778888888643
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=0.00019 Score=84.25 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=109.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc----cCc-----------------cEE
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE----FEG-----------------SSF 247 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~-----------------~~~ 247 (1214)
....++|.+..++.+...+..+ .-...+.++|++|+||||+|+.+++.+... +.. ...
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 4467899999999999888643 234677899999999999999999876422 110 011
Q ss_pred EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 248 LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+.. ....+. ...++++.. +... ..+++-++|+|+++.. .....+...+....+.
T Consensus 91 ~~~----~~~~~~-~~~~~l~~~------------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 91 IDA----ASNNGV-DDIREILDN------------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred eec----cccCCH-HHHHHHHHH------------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 100 000000 001111111 1100 1245568899999754 3455555555444456
Q ss_pred cEEEEEeCCcc-hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 325 SRIIITSRDEH-LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 325 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
..+|++|.+.. +.... .....+++.+++.++..+++...+-...... ..+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 77777775543 22222 2235788999999999999988774433221 23567788999999986654443
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=5.3e-08 Score=102.81 Aligned_cols=174 Identities=24% Similarity=0.253 Sum_probs=93.5
Q ss_pred cccceecccccCCC-CCccccCCCCcceEEEeeCccCc-ccCcccCCCCCCcEEecCCCCCCCcCC--cccCCCCCCCEE
Q 000943 699 HLRKLVLSGCSKLK-KFPEVVGSMECLLELFLDGTAIE-ELPSSIQLLNGLILLNLEKCTHLVGLP--STINDLTSLITL 774 (1214)
Q Consensus 699 ~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp--~~l~~L~sL~~L 774 (1214)
.|++|+||+..... .+-..+..+.+|+.|.|.|+.+. .+...|..-.+|+.|+|+.|....... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666532221 22334455666777777777665 344556677788888888876655422 225567788888
Q ss_pred EecCCCCCCccC-------CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-c
Q 000943 775 NLSGCSKSKNVG-------VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-L 846 (1214)
Q Consensus 775 ~ls~c~~l~~~p-------l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~ 846 (1214)
+++.|......- -+.|..|+++|+.-.-..+ .+.. .
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s------------------------------------h~~tL~ 309 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS------------------------------------HLSTLV 309 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh------------------------------------HHHHHH
Confidence 888876554321 2344444444432110000 0111 1
Q ss_pred CCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecC---cccCCCCCCCEEeecCCc
Q 000943 847 LGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLP---ESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 847 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp---~~i~~l~~L~~L~L~~C~ 909 (1214)
..+|+|..|||++|.......-..+..++.|++|.|+.|-.. .| -.+...|+|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 234566666666665433333344555666666666666321 11 134556677777777763
No 89
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.00078 Score=77.55 Aligned_cols=205 Identities=13% Similarity=0.166 Sum_probs=115.3
Q ss_pred ccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhc--cCCHHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISE--KGGLISLQK 265 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~l~~ 265 (1214)
...+..|+|...-+++.+.+.. ....+.|.|+..+|||+|..++.+..+..--.++++ ++..... ..+.....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHHH
Confidence 3456678998555555555542 246899999999999999999998776542233333 4444322 234444444
Q ss_pred HHHHhhh---cCCCC--C-----cccccchHHHHHHHh---CCCcEEEEEeCCCCHHH----HHHHhcccC-CCC-----
Q 000943 266 QLLSQLL---KLPDS--G-----IWDVYDGLKMIGTRL---RYRRVLLIIDDAFDLKQ----LESLAGERE-WFG----- 322 (1214)
Q Consensus 266 ~ll~~ll---~~~~~--~-----~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~----l~~l~~~~~-~~~----- 322 (1214)
.+...+. +.... + ..........+.+.+ .+++++|++|+|+..-. ...+.+.+. |..
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 4444432 21110 0 111112223344432 25899999999985321 111211110 000
Q ss_pred --CCcEEEEEeCCc--chh-hh----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 323 --PGSRIIITSRDE--HLL-TT----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 323 --~gs~IIiTTR~~--~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
...-.+|..... ... .. ..+...++|++++.+|+..|...+-.. .. ....++|...+||+|..+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~----~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS----QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC----HHHHHHHHHHHCCCHHHHH
Confidence 111112222211 111 11 233468899999999999999876422 11 2238889999999999999
Q ss_pred HHHhhhCCC
Q 000943 394 VLGSFLCGK 402 (1214)
Q Consensus 394 ~lg~~L~~~ 402 (1214)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999988653
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.0001 Score=89.80 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=106.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....+||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+...-... ... .+.......+.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p--------Cg~C~sCr~i~ 83 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP--------CGVCQSCTQID 83 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC--------CcccHHHHHHh
Confidence 3478999999999999988743 2346788999999999999999988653211000 000 00000000000
Q ss_pred H----hhhcC---CCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCcc-hh
Q 000943 269 S----QLLKL---PDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDEH-LL 337 (1214)
Q Consensus 269 ~----~ll~~---~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~~-v~ 337 (1214)
. +++.. ......++.+.+..... -..+++-++|||+++... ....|+..+.......++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 0 00000 00000111111111100 012466789999998653 24445444433345667777776542 22
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
... .....+++.+++.++..+.+.+.+-..... -..+.+..|++.++|.+.-+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 221 223467888999999999998876443322 22456778999999987443
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.2e-08 Score=102.83 Aligned_cols=179 Identities=21% Similarity=0.177 Sum_probs=125.7
Q ss_pred cceEEEeeCccCc--ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccc
Q 000943 723 CLLELFLDGTAIE--ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVL 800 (1214)
Q Consensus 723 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l 800 (1214)
.|++|||+...|+ .+..-+..+.+|+.|.|.++..-..+-..+..-.+|+.|++++|+.+.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------------- 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH-------------
Confidence 5899999998887 4444466788899999999877777777788889999999999987665431
Q ss_pred cCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCC--CCCCCcccccCCCCCCc
Q 000943 801 RNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCN--LGEGAIPSDIGNLCSLK 878 (1214)
Q Consensus 801 ~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~--l~~~~lp~~l~~l~sL~ 878 (1214)
.--+.+|+.|..|+++.|.+...... ..+ -.--+.|+.|+|++|. +....+..-...+++|.
T Consensus 253 ---~ll~~scs~L~~LNlsWc~l~~~~Vt-----------v~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 253 ---QLLLSSCSRLDELNLSWCFLFTEKVT-----------VAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred ---HHHHHhhhhHhhcCchHhhccchhhh-----------HHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 11246788899999999887643210 000 1112578999999984 22222333345789999
Q ss_pred EEeCCCCC-Ce-ecCcccCCCCCCCEEeecCCcCCCc--cc--CCccccceeeecCcc
Q 000943 879 ELCLSKNK-FI-LLPESISCLSKLWIIDLEECKRLQS--LS--QLPSNIEEVRLNGCA 930 (1214)
Q Consensus 879 ~L~L~~n~-l~-~lp~~i~~l~~L~~L~L~~C~~L~~--lp--~lp~sL~~L~l~~C~ 930 (1214)
.|||+.|. ++ .+-..+.+++.|++|.++.|-.+-- +- .--|+|.+|++.||-
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99999984 44 3334677899999999999975421 11 112689999999984
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=0.0001 Score=79.80 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=85.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL 293 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L 293 (1214)
.+.+.|+|+.|+|||+|+++++.... ..|+.. .....+++.. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~----------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANA----------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHh----------------------h
Confidence 46689999999999999998886532 224430 0111111111 0
Q ss_pred CCCcEEEEEeCCCCH----HHHHHHhcccCCCCCCcEEEEEeCC---------cchhhhcCccceeecCCCCHHHHHHHH
Q 000943 294 RYRRVLLIIDDAFDL----KQLESLAGEREWFGPGSRIIITSRD---------EHLLTTYGVDEVLKLKELHDDEALQLF 360 (1214)
Q Consensus 294 ~~kr~LlVLDdv~~~----~~l~~l~~~~~~~~~gs~IIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf 360 (1214)
.+ -+|++||++.. +.+-.+..... ..|..||+|++. +.+...+....++++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 27888999642 23333332222 357789999874 233333455579999999999999999
Q ss_pred HHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 361 CKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
.+.+-...- .-.+++..-|++++.|..-++..
T Consensus 163 ~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQL--YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHH
Confidence 988744322 12245677788888777666553
No 93
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.7e-05 Score=89.76 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=109.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+++||-+.-++.|...+..+ .-...+.++|..|+||||+|+.+++.+-..-...- ... .....+.-.....+.
T Consensus 14 tFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQPCGQCRACTEID 88 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCCCCcccHHHHHHH
Confidence 3468999999999999888643 23466789999999999999999986632100000 000 000000000001110
Q ss_pred H----hhhcCCCCCcccccchHHHHHHH----hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchh
Q 000943 269 S----QLLKLPDSGIWDVYDGLKMIGTR----LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLL 337 (1214)
Q Consensus 269 ~----~ll~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~ 337 (1214)
. +++.........+++..+.+... ..++.-++|||+++.. .....|+..+.....+.++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 00000000000111111111111 1356678999999965 4566676665544556666665554 3443
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
... .-...+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-.
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 322 123689999999999999988776433222 12345677899999988543
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=8.3e-05 Score=85.58 Aligned_cols=196 Identities=19% Similarity=0.149 Sum_probs=111.7
Q ss_pred cccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc----cCccEEEEeehhhhccCCHHH
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE----FEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... ...+-..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCH
Confidence 445678999999999999888644 345678899999999999999999876432 1111000 0000111
Q ss_pred HHHHHHHh----h--h-cCCCC------CcccccchHHHHHHHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCC
Q 000943 263 LQKQLLSQ----L--L-KLPDS------GIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFG 322 (1214)
Q Consensus 263 l~~~ll~~----l--l-~~~~~------~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~ 322 (1214)
..+.+... + + ...+. ..-.+++ +..+.+.+ .+++-++|+|+++... ....|...+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 11222111 0 0 00000 0001111 22233333 2466789999999643 3455554444334
Q ss_pred CCcEEEEEe-CCcchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 323 PGSRIIITS-RDEHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 323 ~gs~IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
....+|++| +...+.... .....+++.+++.++..+++...+.... -..+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 455555544 433333332 1235899999999999999987432211 11345678999999999865544
No 95
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=0.00014 Score=79.50 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=87.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..+.+.|+|++|+|||+||+++++.....-..+.|+. +.... ... ..+.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~------~~~----------------------~~~~~~ 94 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA------WFV----------------------PEVLEG 94 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh------hhh----------------------HHHHHH
Confidence 3467889999999999999999987765433444554 21100 000 011111
Q ss_pred hCCCcEEEEEeCCCCH---HHHHH----HhcccCCCCCC-cEEEEEeCCc---------chhhhcCccceeecCCCCHHH
Q 000943 293 LRYRRVLLIIDDAFDL---KQLES----LAGEREWFGPG-SRIIITSRDE---------HLLTTYGVDEVLKLKELHDDE 355 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~---~~l~~----l~~~~~~~~~g-s~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~e 355 (1214)
+.. --+|++||++.. .+|+. +..... ..| .++|+||+.. .+...+....+++++++++++
T Consensus 95 ~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 95 MEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred hhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 111 237899999753 22322 222111 233 4799999864 222223444689999999999
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 356 ALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 356 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
-.+.+.+++....- .-.+++..-|++++.|..-++..
T Consensus 172 ~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 172 KLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHH
Confidence 99999886643321 12245677788888776555443
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=6.4e-05 Score=90.68 Aligned_cols=181 Identities=19% Similarity=0.187 Sum_probs=108.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc---------------------CccEE
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF---------------------EGSSF 247 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~ 247 (1214)
....++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.... .....
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3467899999999988888643 3345678999999999999999998664211 11111
Q ss_pred EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 248 LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+. .....++ .+..+..+.+.. -..+++-++|+|+++.. .....|...+......
T Consensus 93 id----aas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 93 ID----AASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred ee----cccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 10 0000111 111111111111 12356779999999854 4466666655544456
Q ss_pred cEEEEEeCC-cchhhh-cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHH
Q 000943 325 SRIIITSRD-EHLLTT-YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVL 395 (1214)
Q Consensus 325 s~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 395 (1214)
..+|++|-+ ..+... ......+++.+++.++..+.+...+-.... ....+....|++.++|.+ -|+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666655544 333322 223468999999999999888776533221 122455677889999866 344444
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00059 Score=81.33 Aligned_cols=177 Identities=21% Similarity=0.223 Sum_probs=107.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc---------------------CccEE
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF---------------------EGSSF 247 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~ 247 (1214)
..+++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+--.. ...+.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 3478999998888888887643 2245788999999999999999987552211 11111
Q ss_pred EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 248 LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+. .+...++.++ ++++ +..... ..+++-++|+|+++.. +....|...+....+.
T Consensus 90 id----aas~~~vddI-R~Ii------------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 90 ID----AASNTSVDDI-KVIL------------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred Ee----cccCCCHHHH-HHHH------------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 11 0001111111 1111 111100 1245668999999854 3456666555544567
Q ss_pred cEEEEEeCC-cchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 325 SRIIITSRD-EHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 325 s~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
..+|++|.+ +.+.... .....+++.+++.++..+.+...+...... -..+.+..|++.++|.+-.
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 777766644 3333322 234688999999999999998877544322 2245567889999988753
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00014 Score=77.52 Aligned_cols=263 Identities=21% Similarity=0.221 Sum_probs=145.9
Q ss_pred cccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
.-..|||-++-.+++.-.+... ....-.|.++|++|.||||||.-+++.+...+.. . + .. ..+-..
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-----s-Gp-~leK~g 92 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-----S-GP-ALEKPG 92 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-----c-cc-cccChh
Confidence 3478999998888887666622 2345678999999999999999999987654321 1 0 00 000001
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHHH-HHHHh-cccCC--------CCCCcE---------
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQ-LESLA-GEREW--------FGPGSR--------- 326 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-l~~l~-~~~~~--------~~~gs~--------- 326 (1214)
++ ..+..-|+.. =++.+|.++...- +++++ +...+ -++++|
T Consensus 93 Dl-------------------aaiLt~Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 93 DL-------------------AAILTNLEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hH-------------------HHHHhcCCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11 1111112222 2455677764321 22221 11111 134444
Q ss_pred --EEEEeCCcchhhhcC--ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCC
Q 000943 327 --IIITSRDEHLLTTYG--VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGK 402 (1214)
Q Consensus 327 --IIiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~ 402 (1214)
|=.|||...+...+. -.-+.+++.-+.+|-.+...+.|..-.. +-.++.+.+|+++..|-|--..-+-+..+.
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD- 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVRD- 229 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHHH-
Confidence 347899765544332 1246788889999999999888733222 223466888999999999543333222221
Q ss_pred ChHHHHHHHH--HHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCC--CCHHHHHHHHhhCCCcchhhh-HHhhcc
Q 000943 403 TTKEWESSIQ--RLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRG--KSRDYVTKILDYCDFDAVIGI-RVLIDK 477 (1214)
Q Consensus 403 ~~~~w~~~l~--~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~~~l-~~L~~~ 477 (1214)
+..+.. .+...........|.+--.+|+..+++.+..+.-.+.| ...+.+...+.......+..+ -.|+..
T Consensus 230 ----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~ 305 (332)
T COG2255 230 ----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQ 305 (332)
T ss_pred ----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHh
Confidence 111100 00000012233444444567888888887777655533 345666665544322223323 358999
Q ss_pred CceEEecCCeEE
Q 000943 478 SLIEISSGNRLW 489 (1214)
Q Consensus 478 sLi~~~~~~~~~ 489 (1214)
++|+....|++.
T Consensus 306 gfi~RTpRGR~a 317 (332)
T COG2255 306 GFIQRTPRGRIA 317 (332)
T ss_pred chhhhCCCccee
Confidence 999988777753
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00011 Score=85.74 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=104.6
Q ss_pred cCcccchhhHHHHHHHHhhhcC--------CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELN--------GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
+.++|-+.-++.|...+..+.. -.+.+.++|+.|+|||++|+.+++.+-..... . . .-+.-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~-------~Cg~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-P-------GCGECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-C-------CCCCCH
Confidence 5688998888889888875421 24678899999999999999998865322110 0 0 000000
Q ss_pred HHHHHHHhhhcCC-------CCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEE
Q 000943 263 LQKQLLSQLLKLP-------DSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRII 328 (1214)
Q Consensus 263 l~~~ll~~ll~~~-------~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~II 328 (1214)
....+... ..+ ......+++ +..+.+.+ .+++-++|+|+++.. .....|...+....++..+|
T Consensus 75 ~C~~~~~~--~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 75 ACRTVLAG--THPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred HHHHHhcC--CCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 00000000 000 000000111 11111211 245558888999954 33444554444445667777
Q ss_pred EEeCCc-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 329 ITSRDE-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 329 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
++|.+. .+.+.. .....+.+.+++.++..+.+.... ..+ .+.+..++..++|.|.....+
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GVD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 776664 333332 223689999999999999887542 111 345677899999999755444
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00012 Score=89.73 Aligned_cols=191 Identities=18% Similarity=0.154 Sum_probs=109.0
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....+||-+.-++.|...+..+ .-...+.++|..|+||||+|+.+++.+-...... ....+.-....++.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREIE 83 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHHH
Confidence 4478999999999998888643 2345578999999999999999988653321000 00000001111111
Q ss_pred Hh----hh--cCC-CCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chh
Q 000943 269 SQ----LL--KLP-DSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLL 337 (1214)
Q Consensus 269 ~~----ll--~~~-~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~ 337 (1214)
.. +. ... .....++.+..+.+.. -..+++-++|||+++.. .....|+..+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 00 000 0111111111111111 12456779999999954 44666655554444566666666554 333
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
... .....|.+.+++.++..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRD 216 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 222 224689999999999999998766332221 1235567799999998753
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00019 Score=77.39 Aligned_cols=180 Identities=20% Similarity=0.225 Sum_probs=97.4
Q ss_pred cCc-ccchhhH-HHHHHHHhhhc-CCcEEEEEEecCCchHHHHHHHHHHHHhcccC-c-cEEEEeehhhhccCCHHHHHH
Q 000943 191 KDL-VGIDSRW-KKLRFLIDKEL-NGVRMIGICGMGGIGKTTLARVVYDLIAHEFE-G-SSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 191 ~~~-vGr~~~l-~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
++| +|-..+. -.....+.... .....+.|+|..|.|||.|++++++.+....+ . ++++. . .+...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHH
Confidence 455 4654432 22333333322 23445789999999999999999998766543 3 33433 2 22333
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH---HHH-HHhcccC-CCCCCcEEEEEeCCc-chhh-
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK---QLE-SLAGERE-WFGPGSRIIITSRDE-HLLT- 338 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~-~l~~~~~-~~~~gs~IIiTTR~~-~v~~- 338 (1214)
.+...+-. .....+++.+++ -=+|++||++... .|+ .+...+. ....|.+||+|++.. .-+.
T Consensus 78 ~~~~~~~~----------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRD----------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHT----------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHc----------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 33333211 123455666664 3467899998542 122 2221111 113577899999653 2222
Q ss_pred -------hcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 339 -------TYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 339 -------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
.+.....+++++++.++..+++.+.+....-. -.+++++-|++.+.+..-.|.
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 12334689999999999999999988543332 224566667777666554443
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.98 E-value=5.8e-05 Score=82.28 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=88.7
Q ss_pred cCcccchhhHHH---HHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 191 KDLVGIDSRWKK---LRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 191 ~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
++.||.+..+.+ |.+++ +.+....+.+||++|.||||||+.++..-+.+- ..|+. .+....-..-.+.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDI 209 (554)
T ss_pred HHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHH
Confidence 556666655533 23333 345677788999999999999999987554432 34554 22221112222223
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEE--EeCCcchh---hhc
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIII--TSRDEHLL---TTY 340 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIi--TTR~~~v~---~~~ 340 (1214)
+.+. .=...+..+|.+|.+|.|+. ..|-+.+++.. ..|.-++| ||.++..- ...
T Consensus 210 fe~a----------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 210 FEQA----------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHH----------------HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHH
Confidence 3221 01123467899999999984 34555565543 46665554 77775431 112
Q ss_pred CccceeecCCCCHHHHHHHHHHh
Q 000943 341 GVDEVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
....++.|++|+.++...++.+.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHH
Confidence 34468999999999999988774
No 103
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=101.00 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=37.5
Q ss_pred ccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeC
Q 000943 653 LEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDG 731 (1214)
Q Consensus 653 L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~ 731 (1214)
++.|+|++|..-..+|..++.+++|+.|+|++|.....+|..+ .+++|+.|+|++|.....+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4444555444333444445555555555555443333444333 344444444444444444444444444444444444
Q ss_pred ccCc
Q 000943 732 TAIE 735 (1214)
Q Consensus 732 ~~i~ 735 (1214)
|.+.
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 4443
No 104
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=1.1e-05 Score=100.75 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=70.8
Q ss_pred CCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCc-ccCcccCCCCCCcEEecC
Q 000943 676 NLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE-ELPSSIQLLNGLILLNLE 753 (1214)
Q Consensus 676 ~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 753 (1214)
.++.|+|++|..-..+|..+ .+++|+.|+|++|.....+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 35667777765555666655 6677777777776666667777777777777777777776 566667777777777777
Q ss_pred CCCCCCcCCcccCCC-CCCCEEEecCCCC
Q 000943 754 KCTHLVGLPSTINDL-TSLITLNLSGCSK 781 (1214)
Q Consensus 754 ~c~~l~~lp~~l~~L-~sL~~L~ls~c~~ 781 (1214)
+|.....+|..+..+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 776666677666543 3455666666543
No 105
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.97 E-value=1.2e-05 Score=79.00 Aligned_cols=89 Identities=22% Similarity=0.410 Sum_probs=48.5
Q ss_pred ccEEEccccccccccHHHHHHHHHHhC-------CCce----------EecCccccCCCccchHHHHHhhhccEEEEEec
Q 000943 14 YDVFLSFRGEDTRKNFTDHLCAALDQK-------GIIV----------FRDDKELERGKSISPGLFKAIEESRISIIVFS 76 (1214)
Q Consensus 14 ~dvFiS~~~~d~~~~f~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S 76 (1214)
|.|||||+++|. ...+..|...+... .+.. +.+..+....+.|...|.++|.+|+++||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 679999999983 34777777777763 2221 12222333455889999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHHhcCCCceEEEEEE
Q 000943 77 RNYAHSTWCLDELVKIVELKSTNGQQQVIFPIF 109 (1214)
Q Consensus 77 ~~y~~s~wc~~El~~~~~~~~~~~~~~~v~Pi~ 109 (1214)
++-..|+|+..|+..+++ .+. .||-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~--~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGK--PIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T-----EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCC--CEEEEE
Confidence 999999999999998886 344 677765
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00024 Score=85.79 Aligned_cols=196 Identities=19% Similarity=0.178 Sum_probs=106.7
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-....- ..+-....+.+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~---------~Cg~C~sCr~i~ 83 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD---------CCNSCSVCESIN 83 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHH
Confidence 4478999999999998888643 234678899999999999999999876321100000 000000111111
Q ss_pred Hh----hhcCC---CCCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchh
Q 000943 269 SQ----LLKLP---DSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLL 337 (1214)
Q Consensus 269 ~~----ll~~~---~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~ 337 (1214)
.. +.... .....++......+... ..+++-++|+|+++.. .....|...+....+...+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 00 00000 00011111111111110 1123446999999864 3455555544333455666655543 3333
Q ss_pred hh-cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHHH
Q 000943 338 TT-YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVLG 396 (1214)
Q Consensus 338 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg 396 (1214)
.. ......+++.+++.++....+...+...... -..+.+..+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 1224588999999999999888876443221 113456788999999664 444443
No 107
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.8e-06 Score=103.12 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=27.5
Q ss_pred cccccccccccccccccccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccC
Q 000943 604 PENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRG 660 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~ 660 (1214)
+..+..+++..|.+.+.-..+..+.+|..|++.+|+. ..+.+ +..+++|++|+|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSF 127 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccc
Confidence 3444555555555555333345555555555555532 22233 44455555555555
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00052 Score=83.05 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=105.8
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--c-------------------CccEE
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--F-------------------EGSSF 247 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F-------------------~~~~~ 247 (1214)
..+++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . .....
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 3468999999999999988643 234567899999999999999999865321 1 11111
Q ss_pred EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 248 LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+. .+...++..+ ++++.. +.- -..++.-++|+|+|+.. .....|...+....+.
T Consensus 93 id----aas~~~v~~i-R~l~~~------------------~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 93 VD----AASRTKVEDT-RELLDN------------------IPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred Ec----ccccCCHHHH-HHHHHH------------------HhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 11 0001111111 111111 100 01245668999999954 4455565555444567
Q ss_pred cEEEEEeCCc-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 325 SRIIITSRDE-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 325 s~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
.++|++|.+. .+.... .....+++.+++.++....+...+-...... ..+....|++.++|.+.-+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 7777766553 222221 2235789999999998887776654333221 2345667888999987443
No 109
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=0.00025 Score=74.84 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=61.0
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCC
Q 000943 295 YRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQP 370 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 370 (1214)
+.+-++|+|+++.. +..+.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 45678999999864 34556665555545677787777653 232222 22358999999999999998776 1 1
Q ss_pred chHHHHHHHHHHHHhCCChH
Q 000943 371 WKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPL 390 (1214)
..+.+..+++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 13567889999999885
No 110
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00026 Score=85.08 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=108.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC-------ccEEEEeehhhhccCCHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE-------GSSFLANVREISEKGGLI 261 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~~~~~~~~ 261 (1214)
...++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|..+
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C------------ 85 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC------------ 85 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC------------
Confidence 3467899999888888777543 23467889999999999999999986632110 001110
Q ss_pred HHHHHHHHh----hhc---CCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEe
Q 000943 262 SLQKQLLSQ----LLK---LPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITS 331 (1214)
Q Consensus 262 ~l~~~ll~~----ll~---~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTT 331 (1214)
.....+... +.. .......++.+.++.... -..+++-++|+|+++.. ..+..|...+....+...+|++|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 000000000 000 000011111111111110 12356778999999964 44666665555445566666544
Q ss_pred -CCcchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 332 -RDEHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 332 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
+...+.... .....+++.+++.++..+.+...+...... ...+.+..|++.++|.+--
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 444444333 223579999999999999998887543322 1234567788999997743
No 111
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.0002 Score=85.59 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=96.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccC--ccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFE--GSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
.-+.|+|..|.|||.|++++++.+....+ .++++. . ..+...+...+... ....+.+++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~---------~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G---------DEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 45789999999999999999997754332 223332 1 23334443332110 0123344444
Q ss_pred hCCCcEEEEEeCCCCHH----HHHHHhcccC-CCCCCcEEEEEeCCc-ch--------hhhcCccceeecCCCCHHHHHH
Q 000943 293 LRYRRVLLIIDDAFDLK----QLESLAGERE-WFGPGSRIIITSRDE-HL--------LTTYGVDEVLKLKELHDDEALQ 358 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~----~l~~l~~~~~-~~~~gs~IIiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~ 358 (1214)
++ +.-+|||||++... ..+.+...+. ....|..||+|+... .. ...+...-++++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 44 34578899997432 1222322211 113455788887543 12 2222334578899999999999
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 359 LFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 359 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
++.+++-.......-.++++.-|++.++|.|-.+.-+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99988743221112235678889999999997765444
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.91 E-value=8.3e-05 Score=87.46 Aligned_cols=171 Identities=15% Similarity=0.223 Sum_probs=98.4
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.+++.|+++.++++.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~~------ 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVGS------ 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeehH------
Confidence 45789999999999887641 113356789999999999999999998765432 111111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCHH------------H----HHHHhcccCCC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDLK------------Q----LESLAGEREWF 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~------------~----l~~l~~~~~~~ 321 (1214)
. +.....+. .......+ ...-...+.+|+||+++... . +..+......+
T Consensus 200 ---~----l~~~~~g~-------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ---E----LVQKFIGE-------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ---H----HhHhhccc-------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1 11110000 00111111 11223567899999998531 1 22233222211
Q ss_pred --CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHHhCCC
Q 000943 322 --GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQPW-KEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 322 --~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 388 (1214)
..+..||.||.....+.. + ..+..++++..+.++..++|..++.+..... .+ ...+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 235677778765433222 1 2356899999999999999998875433221 12 23455566554
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00094 Score=81.88 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=107.7
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc----CccEEEEeehhhhccCCHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF----EGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
..+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-..- .+... ...+.-...
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~C 84 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQAC 84 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHHH
Confidence 3468899888888888888643 3346778999999999999999988653210 00000 000000111
Q ss_pred HHHHHh----hhcCCCCCcccccchHHHHHHHh--------CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEE
Q 000943 265 KQLLSQ----LLKLPDSGIWDVYDGLKMIGTRL--------RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIIT 330 (1214)
Q Consensus 265 ~~ll~~----ll~~~~~~~~~~~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiT 330 (1214)
..+... ++...... ..+++.+++.+ .++.-++|||+|+.. .....|...+........+|++
T Consensus 85 ~~i~~g~h~D~~eldaas----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 85 RDIDSGRFVDYTELDAAS----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHcCCCCceeecCccc----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 111000 00000000 01122222222 234568999999954 4466666655444456667666
Q ss_pred eCC-cchhhh-cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 331 SRD-EHLLTT-YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 331 TR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
|.+ ..+... ......+++++++.++..+.+.+.+....... ..+.+..|++.++|.+--+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 644 333322 22346899999999999999988764433221 2356677888999877443
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00028 Score=83.50 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=107.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--cCccEEEEeehhhhccCCHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--FEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
....++|.+.-.+.|...+..+ .-...+.++|+.|+||||+|+.+++.+... ....-|..... ...+.-...+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c~~ 89 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESCRD 89 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHHHH
Confidence 3468899988888888888643 234558899999999999999999876431 11100110000 00000000111
Q ss_pred HHHhh----hcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEe-CCc
Q 000943 267 LLSQL----LKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITS-RDE 334 (1214)
Q Consensus 267 ll~~l----l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTT-R~~ 334 (1214)
+.... ...........++. ..+.+.+ .+++-++|+|+++.. ..+..+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11000 00000000001111 1122222 245668899999854 34666665554445666766655 334
Q ss_pred chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 335 HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
.+.... .....+++.++++++..+.+...+-.... .-..+.+..+++.++|.+--
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 443322 12357899999999999888877633221 12245678899999998743
No 115
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.87 E-value=1.1e-05 Score=67.73 Aligned_cols=58 Identities=38% Similarity=0.546 Sum_probs=49.2
Q ss_pred CCCCEEecCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCEEeecCCc
Q 000943 850 CSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 850 ~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~C~ 909 (1214)
|+|++|+|++|++.. +| ..+..+++|+.|+|++|.++.+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578899999998854 66 57788999999999999999887 477899999999999875
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00095 Score=78.51 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=105.0
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--------cCccEEEEeehhhhccCCH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--------FEGSSFLANVREISEKGGL 260 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------F~~~~~~~~~~~~~~~~~~ 260 (1214)
..+.++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-. .. ....+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~~~ 90 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNNSV 90 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCCCH
Confidence 3467899999999998888643 234688899999999999999998866431 21111111 00 000111
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEe-CCcchh
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITS-RDEHLL 337 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTT-R~~~v~ 337 (1214)
.. ..+++..+.. .-..+++-++|+|+++.. ..+..+...+........+|++| ....+.
T Consensus 91 ~~-i~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 DD-IRNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HH-HHHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 11 1111111000 001235568999999854 33555544333223455566555 333333
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
... .....+++.++++++....+...+...... -..+.+..+++.++|.+-.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRD 205 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 322 223578999999999999988877543322 1245677888899987653
No 117
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=3.6e-06 Score=91.65 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCCCCCEEecCCCCCCCCCc---ccccCCCCCCcEEeCCCCCCe-----ecCcccCCCCCCCEEeecCC
Q 000943 848 GLCSLTKLDLSDCNLGEGAI---PSDIGNLCSLKELCLSKNKFI-----LLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~l---p~~l~~l~sL~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~C 908 (1214)
..+.|+.+.++.|.+....+ -..+..+++|+.|+|..|-|+ .+...+..+++|+.|++++|
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 34555555565555533222 123445556666666666554 23344455555666666665
No 118
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.84 E-value=0.00024 Score=79.11 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=82.5
Q ss_pred cCcccchhhHHHHHHHHhh-------------hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc--CccEEEEeehhhh
Q 000943 191 KDLVGIDSRWKKLRFLIDK-------------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF--EGSSFLANVREIS 255 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~ 255 (1214)
..++|.+...++|.+.... .......+.++|++|.||||+|+.+++.+...- ....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 3578877776666544320 012345678999999999999999988653211 1122222 110
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH----------HHHHHHhcccCCCCCCc
Q 000943 256 EKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL----------KQLESLAGEREWFGPGS 325 (1214)
Q Consensus 256 ~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs 325 (1214)
.. +.....+.. .......+.. . ..-+|++|+++.. +.++.+...........
T Consensus 83 -----~~----l~~~~~g~~------~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 -----AD----LVGEYIGHT------AQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -----HH----hhhhhccch------HHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 11 111111100 0011111221 1 2348899999852 34555655544333344
Q ss_pred EEEEEeCCcchhh------hc--CccceeecCCCCHHHHHHHHHHhhhc
Q 000943 326 RIIITSRDEHLLT------TY--GVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 326 ~IIiTTR~~~v~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
.+|+++.....-. .+ .....++++.++.++..+++.+.+..
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5556654332211 11 12346889999999999999877643
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0007 Score=83.26 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=106.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--cCccEEEEeehhhhccCCHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--FEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
..+.+||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... .....|...+.+ .-+.-...+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHHH
Confidence 3478999998888888887643 234568899999999999999999866321 111111110000 0000011111
Q ss_pred HHHhh----hcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEe-CCc
Q 000943 267 LLSQL----LKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITS-RDE 334 (1214)
Q Consensus 267 ll~~l----l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTT-R~~ 334 (1214)
+.... ..........+++... +.+.+ .+++-++|+|+++... ....|...+....+.+.+|++| +..
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 10000 0000000001111111 12222 2455578999998653 3555655554434556655555 434
Q ss_pred chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 335 HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
.+.... .....+++.+++.++....+...+...... -..+.++.+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 443332 334689999999999998887765432211 124567789999999654
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00046 Score=84.78 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=110.3
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCcc---EEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGS---SFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---~~~~~~~~~~~~~~~~~l~~ 265 (1214)
....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+....... .-+. ..+.-...+
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~C~ 93 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEHCQ 93 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHHHH
Confidence 4578999999999999988743 2345688999999999999999998664322100 0000 000000011
Q ss_pred HHHHh----hhcC---CCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEe-CCc
Q 000943 266 QLLSQ----LLKL---PDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITS-RDE 334 (1214)
Q Consensus 266 ~ll~~----ll~~---~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTT-R~~ 334 (1214)
.+... +... ....+.++.+.++.+... ..+++-++|+|+++... ....|...+....+++.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 11110 0000 001111111111111100 12355679999998543 4555655554445667766555 333
Q ss_pred chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 335 HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
.+.... .....+++..++.++....+.+.+-..... ...+.+..|++.++|.+.-+.
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 443332 223588999999999999998876443322 123567788999999885543
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.0023 Score=78.28 Aligned_cols=197 Identities=19% Similarity=0.172 Sum_probs=109.5
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+....... .- ..+.-.....+.
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~--------pCg~C~~C~~i~ 80 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-AT--------PCGVCESCVALA 80 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CC--------cccccHHHHHhh
Confidence 3468999999999999888643 2345678999999999999999998664211000 00 000000000110
Q ss_pred Hh------hhcC---CCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cc
Q 000943 269 SQ------LLKL---PDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EH 335 (1214)
Q Consensus 269 ~~------ll~~---~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~ 335 (1214)
.. ++.. ....+.++.+..+.+... ..+++-++|+|+++.. +....|+..+........+|++|.+ ..
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000 000111111111111111 1245668899999843 4456666555544556666665544 44
Q ss_pred hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHHHh
Q 000943 336 LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVLGS 397 (1214)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg~ 397 (1214)
+.... .....+++..++.++..+.+...+....... ..+.+..|++.++|.+- |+..+-.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43332 2246899999999999998887764433221 23456778889999774 4444433
No 122
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=4.1e-06 Score=100.03 Aligned_cols=168 Identities=27% Similarity=0.271 Sum_probs=90.6
Q ss_pred cCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc--C-CCCccccc
Q 000943 718 VGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV--G-VESLEGLG 794 (1214)
Q Consensus 718 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~--p-l~~L~~L~ 794 (1214)
++.+++|+.|++.+|.|+.+...+..+++|++|+|++|.....- .+..++.|+.|++++|.....- . +..|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhccc
Confidence 44555566666666666655554555666666666665433221 1444555666666666543322 1 55666666
Q ss_pred cCCccccCCccc-ccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCC
Q 000943 795 SSRTVLRNPESS-IFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGN 873 (1214)
Q Consensus 795 l~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~ 873 (1214)
+++|.+..+... ...+.+|+.+.+.+|.+.... .+..+..+..+++..|.+.. -..+..
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-----------------~~~~~~~l~~~~l~~n~i~~---~~~l~~ 228 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIE-----------------GLDLLKKLVLLSLLDNKISK---LEGLNE 228 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhccc-----------------chHHHHHHHHhhccccccee---ccCccc
Confidence 666666666443 456667777777766554321 11122233333555555432 112222
Q ss_pred CCC--CcEEeCCCCCCeecCcccCCCCCCCEEeecC
Q 000943 874 LCS--LKELCLSKNKFILLPESISCLSKLWIIDLEE 907 (1214)
Q Consensus 874 l~s--L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 907 (1214)
+.. |+.|++++|.+..++..+..+..+..|++.+
T Consensus 229 ~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred chhHHHHHHhcccCccccccccccccccccccchhh
Confidence 333 6677777777666655666666666666655
No 123
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00042 Score=84.43 Aligned_cols=194 Identities=20% Similarity=0.196 Sum_probs=106.4
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....+||-+.-++.+..++..+ .-...+.++|+.|+||||+|+.+++.+....... ....+.-.....+.
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pcg~C~~C~~i~ 83 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---------ATPCGVCSACLEID 83 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHh
Confidence 3467899999999988888643 2345678999999999999999988663211000 00000000000000
Q ss_pred H----hhhcCCCCCcccccchHHHHHHH-----hCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCc-ch
Q 000943 269 S----QLLKLPDSGIWDVYDGLKMIGTR-----LRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDE-HL 336 (1214)
Q Consensus 269 ~----~ll~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v 336 (1214)
. ++..........++. +..+.+. ..+++-++|+|+++... ....|...+........+|++|.+. .+
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162 (527)
T ss_pred cCCCCceeEeeccccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhC
Confidence 0 000000000000111 1111111 13466799999999653 3555555554444566666666543 33
Q ss_pred hhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 337 LTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
.... .....+++.+++.++..+.+.+.+...... ...+.+..|++.++|.+- |+..+
T Consensus 163 l~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 123588999999999999887766433221 123456778899999774 44433
No 124
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1.5e-06 Score=101.91 Aligned_cols=130 Identities=25% Similarity=0.278 Sum_probs=96.4
Q ss_pred CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 603 QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
....|...+.++|.+.-+-.++.-++.|+.|||++|+.. ....+..|+.|++|||+. +.+..+|.--..--+|+.|+|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh-hhHHHHhccccccccccc-chhccccccchhhhhheeeee
Confidence 345667778888888888888888999999999999754 334678899999999998 467777742222234999999
Q ss_pred CCCCCCCccCcccccccccceecccccCCCC-CccccCCCCcceEEEeeCccCc
Q 000943 683 KDCTDLTTLPNKIAMIHLRKLVLSGCSKLKK-FPEVVGSMECLLELFLDGTAIE 735 (1214)
Q Consensus 683 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~-lp~~~~~l~~L~~L~L~~~~i~ 735 (1214)
++ +.++++-..-++.+|+.|+++.|-..+. --+.+..+..|+.|+|.||.+-
T Consensus 240 rn-N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RN-NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cc-cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 98 5677777666899999999998643321 1123456677889999998775
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.002 Score=78.47 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=110.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
...+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-......- ...+.-...+.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~ 83 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVT 83 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHh
Confidence 3467899888888888877643 23467889999999999999999986632110000 0000000001110
Q ss_pred Hh----hhcC---CCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchh
Q 000943 269 SQ----LLKL---PDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLL 337 (1214)
Q Consensus 269 ~~----ll~~---~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~ 337 (1214)
.. +... ....+.++....+.+.. -..+++-++|+|+++.. +....|...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 00 0000 00000011111111110 12356678999999865 4455665554433455666666655 3333
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVLGSFL 399 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~lg~~L 399 (1214)
..+ .....+++.+++.++..+.+...+...... -..+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 223578999999999999998866543321 12456778889999865 6777665443
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.76 E-value=0.00062 Score=81.46 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=90.7
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc-----CccEEEEeehh
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF-----EGSSFLANVRE 253 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~ 253 (1214)
...+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 35678899999988877541 112356689999999999999999999875542 2233332 211
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCHH---------H-----HHHHhccc
Q 000943 254 ISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDLK---------Q-----LESLAGER 318 (1214)
Q Consensus 254 ~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----l~~l~~~~ 318 (1214)
. +++....+.. ...+.......+.. ..+++++|+||+++..- + +..+...+
T Consensus 260 ~-----------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P-----------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h-----------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 0 0111000000 00001111122221 23578999999998431 1 22343333
Q ss_pred CCCC--CCcEEEEEeCCcchhh-hc----CccceeecCCCCHHHHHHHHHHhh
Q 000943 319 EWFG--PGSRIIITSRDEHLLT-TY----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 319 ~~~~--~gs~IIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
+... .+..||.||.....+. .+ ..+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 3445566665443322 11 335679999999999999999886
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.76 E-value=0.00031 Score=80.91 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=86.0
Q ss_pred ccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
.....++|.+...+.+..++..+ .-..++.++|++|+|||++|+++++.....+ ..+. .. . .....+ +..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~---~-~~~~~i-~~~ 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GS---D-CRIDFV-RNR 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cC---c-ccHHHH-HHH
Confidence 34578899999999999888642 3356777899999999999999988763221 2222 11 1 111111 111
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH---HHHHHHhcccCCCCCCcEEEEEeCCcchh-hhc-Cc
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL---KQLESLAGEREWFGPGSRIIITSRDEHLL-TTY-GV 342 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~ 342 (1214)
+...... ..+.+.+-++|+|+++.. +....+.........+.++|+||.....+ ... ..
T Consensus 88 l~~~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 88 LTRFAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1110000 001234567899999855 22233333233345678899988754321 111 12
Q ss_pred cceeecCCCCHHHHHHHHHH
Q 000943 343 DEVLKLKELHDDEALQLFCK 362 (1214)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~ 362 (1214)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24677778888888776654
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00069 Score=84.08 Aligned_cols=194 Identities=16% Similarity=0.140 Sum_probs=109.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+.+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.......-. ...+.......+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHh
Confidence 3468999999889888888643 234567899999999999999999876421110000 0000011111111
Q ss_pred Hhh----hcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cch
Q 000943 269 SQL----LKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHL 336 (1214)
Q Consensus 269 ~~l----l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v 336 (1214)
... +..........+.. ..+.+.+ .+++-++|+|+++.. +..+.|...+........+|++|.+ ..+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 110 00000000011111 1111221 245668999999854 4466665554443456667666644 333
Q ss_pred hhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 337 LTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
.... .....+++..++.++....+.+.+...... -..+.+..+++.++|.+..+..
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3221 223578899999999999888876443322 1235677899999998865443
No 129
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=2.7e-05 Score=65.29 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=34.8
Q ss_pred cceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCC
Q 000943 723 CLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 723 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
+|++|++++|.+..+|. .+..+++|++|++++|.....-|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666653 45556666666666555544444556667777777776664
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00054 Score=84.61 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=107.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-....+-. ...+ ....
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C----------~~~~ 83 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQEC----------IENV 83 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHH----------HHhh
Confidence 4467899999999999888643 33566789999999999999999886532110000000 0000 0000
Q ss_pred Hh---hhcCCC---CCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEe-CCcchhh
Q 000943 269 SQ---LLKLPD---SGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITS-RDEHLLT 338 (1214)
Q Consensus 269 ~~---ll~~~~---~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTT-R~~~v~~ 338 (1214)
.. +..... ....++.+..+.+... ..+++-++|+|+++.. ..+..|...+........+|++| +...+..
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00 000000 0011111111111111 1256678999999854 44666665554434555555555 4444433
Q ss_pred hc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 339 TY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
.. .....+++.+++.++..+.+...+-..... ...+.+..+++.++|.+- |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 223589999999999999888765333221 123457788999988664 44443
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.73 E-value=0.00034 Score=89.35 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=87.7
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
-+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++++...- ...+|..+....
T Consensus 181 l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l--------- 249 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL--------- 249 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH---------
Confidence 357999999999999888643 234567999999999999999999874421 233443322111
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCHH----------H-HHHHhcccCCCCCC-cEEEEE
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDLK----------Q-LESLAGEREWFGPG-SRIIIT 330 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------~-l~~l~~~~~~~~~g-s~IIiT 330 (1214)
... .....+.++.+..+.+.+ ..++.+|++|+++..- + -..+.+.+ ..| -++|-+
T Consensus 250 ----~a~-----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~Iga 317 (731)
T TIGR02639 250 ----LAG-----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGS 317 (731)
T ss_pred ----hhh-----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEe
Confidence 100 000012222233333333 3468999999988331 1 22233332 233 345544
Q ss_pred eCCcchh------hhc-CccceeecCCCCHHHHHHHHHHhh
Q 000943 331 SRDEHLL------TTY-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 331 TR~~~v~------~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
|...... ..+ .....++++.++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4432111 111 112478999999999999998654
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.72 E-value=0.00037 Score=89.61 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=97.1
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.+.++||+.++.++...|... ...-+.++|.+|+||||+|+.+++++.... ...+|..++.........
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~--- 260 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV--- 260 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc---
Confidence 467999999999999888643 234566999999999999999999875432 122333322211100000
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh--CCCcEEEEEeCCCCHH-------H--HH-HHhcccCCCCCCcEEEEEe
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL--RYRRVLLIIDDAFDLK-------Q--LE-SLAGEREWFGPGSRIIITS 331 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~-------~--l~-~l~~~~~~~~~gs~IIiTT 331 (1214)
..+....+..+.+.+ .+++++|++|+++... + .. .|.+.+. ...-++|-||
T Consensus 261 ---------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaT 323 (852)
T TIGR03345 261 ---------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAAT 323 (852)
T ss_pred ---------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEec
Confidence 001111122222212 2478999999987542 1 11 2333322 2235666666
Q ss_pred CCcchhhhc-------CccceeecCCCCHHHHHHHHHHhhhcCC--CCchHHHHHHHHHHHHhCCC
Q 000943 332 RDEHLLTTY-------GVDEVLKLKELHDDEALQLFCKKAFKTH--QPWKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 332 R~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~Gl 388 (1214)
......+.. .....+.+++++.+++.+++....-.-. +...-..+....+++.+.+.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 543221111 1225899999999999999754432111 11111234455566666553
No 133
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.71 E-value=0.00084 Score=75.43 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=82.5
Q ss_pred CcccchhhHHHHHHHHh---h-------h--c-CCcEEEEEEecCCchHHHHHHHHHHHHhccc--CccEEEEeehhhhc
Q 000943 192 DLVGIDSRWKKLRFLID---K-------E--L-NGVRMIGICGMGGIGKTTLARVVYDLIAHEF--EGSSFLANVREISE 256 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~---~-------~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~ 256 (1214)
.++|.+...+++.++.. . + . ....-+.++|++|.|||++|+.+++.+...- ....|+. +..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~ 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH
Confidence 56777766666554322 0 0 0 1123578999999999999999888664321 1122332 110
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH-----------HHHHHHhcccCCCCCCc
Q 000943 257 KGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL-----------KQLESLAGEREWFGPGS 325 (1214)
Q Consensus 257 ~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs 325 (1214)
. ++...+.+... ......+.+ . ..-+|+||+++.. +.++.|...+.....+.
T Consensus 99 ----~----~l~~~~~g~~~------~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 99 ----D----DLVGQYIGHTA------PKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred ----H----HHhHhhcccch------HHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 1 12222222110 111112222 1 3358899999732 22344444444334566
Q ss_pred EEEEEeCCcchhhhc--------CccceeecCCCCHHHHHHHHHHhhhc
Q 000943 326 RIIITSRDEHLLTTY--------GVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 326 ~IIiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
+||+++........+ .....+++++++.+|..+++...+-.
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 777776543221111 12357899999999999999887643
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.0026 Score=80.96 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=106.5
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC--c-cEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE--G-SSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
....+||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.-... . .|=.+ ...+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC~ 79 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSCV 79 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHHH
Confidence 3468999999899998888743 23456789999999999999999987632110 0 00000 0000
Q ss_pred HHHHh------h--hcC-CCCCcccccchHHHHH-HHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 266 QLLSQ------L--LKL-PDSGIWDVYDGLKMIG-TRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 266 ~ll~~------l--l~~-~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
.+... + +.. ....+.++.+..+.+. .-..++.-++|||+++.. .....|+..+......+.+|++|.+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00000 0 000 0000111111111110 112355667899999954 3455565555544566666666644
Q ss_pred -cchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 334 -EHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 334 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
..+...+ .....|++..++.++..+++.+.+-..... ...+....|++.++|.+..
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3444332 234689999999999999888765333221 1234567789999998743
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0028 Score=76.41 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=107.9
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc-ccCc--cEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH-EFEG--SSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~--~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..+.+||-+.-.+.+...+..+ .-.++..++|+.|+||||+|+.+++.+-. .... .|..+.. -..+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~--------C~~~~~ 82 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ--------CQSALE 82 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH--------HHHHhh
Confidence 3467999998888888888643 23456789999999999999999886631 1100 0110000 000000
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHH----hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhh
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTR----LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLT 338 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~ 338 (1214)
..-..+...........++..+.+... ..+++-++|+|+++.. +....|...+....+.+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 000000000000000011111111110 1145668899999854 34556665555445677777777664 2222
Q ss_pred hc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 339 TY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
.. .....+++.+++.++..+.+...+....... ..+.+..|++.++|.+--+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 11 2236889999999999999887764433221 2456778999999988443
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0072 Score=72.89 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=105.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc---c--CccEEEEeehhhhccCCHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE---F--EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F--~~~~~~~~~~~~~~~~~~~~l 263 (1214)
....++|-+.-++.+...+..+ .-.....++|+.|+||||+|+.++..+... . ++.. ..+........ ..
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~-~~-- 88 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGS-FP-- 88 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCC-CC--
Confidence 3467899999999998888653 234567789999999999999998866321 0 0000 00000000000 00
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cc
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EH 335 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~ 335 (1214)
.+...........+. +..+.+.. .+++-++|+|+++.. +....|...+....+...+|++|.+ ..
T Consensus 89 ------d~~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 89 ------DLIEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred ------cEEEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 000000000000000 11222222 346679999999854 3355555544433445566655533 33
Q ss_pred hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 336 LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
+.... .....+++.+++.++....+...+-..... ...+.+..+++.++|.+..+.
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33221 223578999999999999888876433322 123556778889999775443
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.0015 Score=78.17 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=91.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccC-cc-EEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFE-GS-SFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~-~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
..-+.|+|.+|+|||+||+++++.+....+ .. .|+. . .++..++...+... ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc----------cHHHHHH
Confidence 345889999999999999999998766543 23 3333 1 22333443332110 1233444
Q ss_pred HhCCCcEEEEEeCCCCH---HHH-HHHhcccC-CCCCCcEEEEEeC-Ccchhh--------hcCccceeecCCCCHHHHH
Q 000943 292 RLRYRRVLLIIDDAFDL---KQL-ESLAGERE-WFGPGSRIIITSR-DEHLLT--------TYGVDEVLKLKELHDDEAL 357 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~---~~l-~~l~~~~~-~~~~gs~IIiTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea~ 357 (1214)
....+.-+|++||++.. ... +.+...+. ....|..||+||. .+.-+. .+.....+++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 44445668999999843 111 12221111 0123557888885 332221 1233457899999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 358 QLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 358 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
+++.+.+....... .++++..|++.+.|.--.+
T Consensus 270 ~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 270 KIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhccccCHHHH
Confidence 99988875332221 2456777888887765443
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.65 E-value=0.0017 Score=69.13 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=41.5
Q ss_pred ccccCcccchhhHHHHHHHHh--hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 188 DIFKDLVGIDSRWKKLRFLID--KELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+.++|.|.+.+.|.+-.. .......-|.+||..|.|||++++++.+.+..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345789999999988765433 122345678899999999999999999877654
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.64 E-value=0.0042 Score=67.35 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=115.2
Q ss_pred ccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh--cccCccEEEEeehhhhccCCHHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA--HEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
...+.++|-+..+..|...+.. ........+|++|.|||+-|++++..+- +-|+.++.-.++ +...|..-...
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr~ 107 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVRE 107 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchhh
Confidence 3457899999988888888765 5678888999999999999999988663 345554432222 22222221000
Q ss_pred --HHHHhhhcCCCCCcccccchHHHHHHHhCCCc-EEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcchhhh-
Q 000943 266 --QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRR-VLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHLLTT- 339 (1214)
Q Consensus 266 --~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~- 339 (1214)
.-++++..... . .... ..++ -.+|||+++.. +.|.+|......+...++.|+.+-.-.....
T Consensus 108 Kik~fakl~~~~~-~----------~~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 108 KIKNFAKLTVLLK-R----------SDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhcCHHHHhhccc-c----------ccCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00111000000 0 0000 0122 47899999965 4588888777766777777665554322221
Q ss_pred c-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 000943 340 Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVLG 396 (1214)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg 396 (1214)
. ....-+..++|.+++...-+...|-....+. ..+..+.|++.++|- --|+.++-
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 1224688899999999998888875554432 245678899999884 34444443
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0046 Score=76.64 Aligned_cols=191 Identities=17% Similarity=0.130 Sum_probs=105.5
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+.++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+.......-.- .+... .....+-
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~----~Cg~C----~sC~~~~ 85 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGE----ACNEC----ESCVAFN 85 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC----CCCcc----hHHHHHh
Confidence 3468999999999998888643 2346688999999999999999888663111000000 00000 0000000
Q ss_pred Hh----hhcCCCCCcccccchHHHHHHH----hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEe-CCcchh
Q 000943 269 SQ----LLKLPDSGIWDVYDGLKMIGTR----LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITS-RDEHLL 337 (1214)
Q Consensus 269 ~~----ll~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTT-R~~~v~ 337 (1214)
.. +...........++....+.+. ..+++=++|+|+++.. .....|...+.....++.+|++| +...+.
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 00 0000000000011111111110 1234557899999864 34556665554444566666555 444454
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
... .....+++.+++.++....+...+-..... ...+.+..|++.++|..-
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMR 217 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 432 234689999999999999998776443322 123467788999998664
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0015 Score=78.23 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=106.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc---C-ccEEEE-eehhhhccCCHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF---E-GSSFLA-NVREISEKGGLISL 263 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---~-~~~~~~-~~~~~~~~~~~~~l 263 (1214)
..++++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+...- + ..|-.+ +.++........
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-- 91 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-- 91 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc--
Confidence 3468999999999998888643 2246678999999999999999998663210 0 000000 000000000000
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchhhh
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLLTT 339 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~ 339 (1214)
+ ..+-+.......++....+.+.. -..+++-++|+|+++.. +....|...+........+|++|.. ..+...
T Consensus 92 ---~-~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 92 ---V-LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred ---e-EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0 00000000000111111111110 11256678999999854 3344555444433456666666643 333332
Q ss_pred c-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 340 Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
. .....+++.++++++..+.+...+-..... -..+.++.++++++|.+- |+..+
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223578999999999999888776433221 124567789999999764 44433
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.61 E-value=0.0014 Score=78.05 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=90.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccC-c-cEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFE-G-SSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
...+.|+|..|+|||.||+++++.+..+.+ . ++|+. . .....++...+... ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~----------~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN----------KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC----------CHHHHHH
Confidence 346889999999999999999998766543 2 23332 1 12223333332211 1233344
Q ss_pred HhCCCcEEEEEeCCCCHH---H-HHHHhcccCC-CCCCcEEEEEeCCc-chh--------hhcCccceeecCCCCHHHHH
Q 000943 292 RLRYRRVLLIIDDAFDLK---Q-LESLAGEREW-FGPGSRIIITSRDE-HLL--------TTYGVDEVLKLKELHDDEAL 357 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IIiTTR~~-~v~--------~~~~~~~~~~l~~L~~~ea~ 357 (1214)
.+++ .-+|||||++... . .+.+...+.. ...+..+|+|+... ..+ ..+.....+++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4433 3478899998431 1 1222222111 12455678877642 211 22223347899999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 358 QLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 358 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
+++...+...... -.+++...|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 9999887543222 124567777888877765433
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.61 E-value=0.00095 Score=78.23 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=99.2
Q ss_pred cccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc
Q 000943 189 IFKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK 257 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 257 (1214)
...++.|.+...+++.+.+.. +-...+-|.++|++|.|||++|+++++.....| +....
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEeh-----
Confidence 346788999999888876641 112457799999999999999999998654332 21110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH------------H----HHHHhcccCCC
Q 000943 258 GGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK------------Q----LESLAGEREWF 321 (1214)
Q Consensus 258 ~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------------~----l~~l~~~~~~~ 321 (1214)
..+ .....+. ......+.+.......+.+|++|+++... . +..+...+..+
T Consensus 213 ---s~l----~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ---SEF----VQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ---HHH----HHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 011 1111110 00011122222334678999999987420 1 22333322211
Q ss_pred --CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 322 --GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 322 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
..+..||.||.....+.. ...+..++++..+.++..++|..+..+.... .-+ ..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 245678888876544322 1345678999999999999888775432221 112 334556666654
No 144
>PRK06620 hypothetical protein; Validated
Probab=97.60 E-value=0.00037 Score=74.77 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=77.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
+.+.|+|++|+|||+||+++++.... .++... .. .. +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~~-------------------------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----NE-------------------------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----ch-------------------------hHHh
Confidence 56899999999999999987664321 222100 00 00 0111
Q ss_pred CCcEEEEEeCCCCHHH--HHHHhcccCCCCCCcEEEEEeCCcch-------hhhcCccceeecCCCCHHHHHHHHHHhhh
Q 000943 295 YRRVLLIIDDAFDLKQ--LESLAGEREWFGPGSRIIITSRDEHL-------LTTYGVDEVLKLKELHDDEALQLFCKKAF 365 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (1214)
..-++++||++...+ +-.+..... ..|..||+|++.... ...+....++++++++.++..+++.+.+.
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234688899985433 222222211 356789999875322 12223345899999999998888887764
Q ss_pred cCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 366 KTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
...- .-.+++.+-|++++.|.--.
T Consensus 162 ~~~l--~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISSV--TISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcCC--CCCHHHHHHHHHHccCCHHH
Confidence 3211 11245666677777665443
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00038 Score=82.09 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=90.6
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..++.|.+.+++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. ..+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~se----- 252 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GSE----- 252 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cch-----
Confidence 35678999999999887751 1123467889999999999999999997755431 111 000
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCC-
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWF- 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~- 321 (1214)
+.... .+. ........+.....+.+.+|+||+++... .+..++..+..+
T Consensus 253 ----L~~k~----~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 ----LIQKY----LGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ----hhhhh----cch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 11110 000 00001112222234578899999876321 122222222211
Q ss_pred -CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhc
Q 000943 322 -GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 322 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
..+..||.||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888876443332 133568999999999999999987644
No 146
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.58 E-value=0.00012 Score=83.04 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=61.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc-ccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCccccc-----chHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH-EFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVY-----DGLK 287 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~-----~~~~ 287 (1214)
-+.++|+|++|+||||||+++|+.+.. +|+..+|+..+.+. ...+.++++++...+............ ...+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999997654 69999999866552 246777777776443322222211111 1112
Q ss_pred HHHHH-hCCCcEEEEEeCCCCHHH
Q 000943 288 MIGTR-LRYRRVLLIIDDAFDLKQ 310 (1214)
Q Consensus 288 ~l~~~-L~~kr~LlVLDdv~~~~~ 310 (1214)
..+.. ..+++++|++|++.....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHH
Confidence 22222 357999999999986543
No 147
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.57 E-value=0.00087 Score=83.30 Aligned_cols=48 Identities=29% Similarity=0.357 Sum_probs=38.8
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+.++|++..+..+...+.. .....+.|+|++|+||||+|+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 446799999999888776642 345679999999999999999998754
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.57 E-value=0.0014 Score=79.03 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=91.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCc--cEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEG--SSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
..-+.|+|.+|.|||+||+++++.+..+++. +.|+. . ..+..++...+.. .....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~----------~~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFVNALRN----------NTMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHc----------CcHHHHHH
Confidence 3568899999999999999999988776533 23332 1 1222333333211 01233444
Q ss_pred HhCCCcEEEEEeCCCCHH----HHHHHhcccC-CCCCCcEEEEEeCCcc---------hhhhcCccceeecCCCCHHHHH
Q 000943 292 RLRYRRVLLIIDDAFDLK----QLESLAGERE-WFGPGSRIIITSRDEH---------LLTTYGVDEVLKLKELHDDEAL 357 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~----~l~~l~~~~~-~~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 357 (1214)
.++ +.-+|||||++... ..+.+...+. ....|..||+|+.... +...+.....+++++++.++..
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 444 34588999997431 1222222111 0123556888876531 1222333457999999999999
Q ss_pred HHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 358 QLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 358 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
+++...+-..... -.++++..|++.+.|..-.+
T Consensus 287 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 287 AILKKKAEEEGID--LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHH
Confidence 9999987543221 22456777888888876543
No 149
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=4.4e-06 Score=98.17 Aligned_cols=170 Identities=26% Similarity=0.275 Sum_probs=112.4
Q ss_pred CcccCCCCCCcEEecCCCCCCCcCCcccCCC-CCCCEEE-----------ecCCC--CCCccCCCCccccccCCccccCC
Q 000943 738 PSSIQLLNGLILLNLEKCTHLVGLPSTINDL-TSLITLN-----------LSGCS--KSKNVGVESLEGLGSSRTVLRNP 803 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L-~sL~~L~-----------ls~c~--~l~~~pl~~L~~L~l~~~~l~~~ 803 (1214)
|-+|..+.+|++|.|.+|..... .++..+ ..|++|- ++.|- +....+-..|...+.+.|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 66677888999999998875431 111111 1222221 11111 11222345566777788888888
Q ss_pred cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCC
Q 000943 804 ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLS 883 (1214)
Q Consensus 804 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~ 883 (1214)
..++.-++.|+.|+|+.|++..- ..+..++.|++|||++|.+.. +|..-..-..|+.|.|+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v-----------------~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV-----------------DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh-----------------HHHHhcccccccccccchhcc--ccccchhhhhheeeeec
Confidence 88888888999999998887532 235567889999999998854 55432222348999999
Q ss_pred CCCCeecCcccCCCCCCCEEeecCCcCCCcccCCc-----cccceeeecCcc
Q 000943 884 KNKFILLPESISCLSKLWIIDLEECKRLQSLSQLP-----SNIEEVRLNGCA 930 (1214)
Q Consensus 884 ~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp-----~sL~~L~l~~C~ 930 (1214)
+|.+++|- ++.+|.+|+.||++++ -|....++- .+|+.|.+.|||
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99888776 7888999999999874 233333332 577888888876
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0065 Score=74.45 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=108.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-----cCccEEEEeehhhhcc--CCHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-----FEGSSFLANVREISEK--GGLI 261 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~~~~--~~~~ 261 (1214)
....++|-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .++. ...+.+..... .++.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSLDVI 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCCCeE
Confidence 3468999999999999888643 335678899999999999999999866321 0100 00000000000 0000
Q ss_pred HHHHHHHHhhhcCCCCCcccccchHHHHHH-HhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchh
Q 000943 262 SLQKQLLSQLLKLPDSGIWDVYDGLKMIGT-RLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLL 337 (1214)
Q Consensus 262 ~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~ 337 (1214)
. +-+.......++.+..+.+.. -..+++-++|+|+++.. ..+..|...+....+...+|++|.+ ..+.
T Consensus 92 ~--------idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 92 E--------IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred E--------ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0 000000001111111111111 11356668999999855 3466666665544566667666644 3333
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
... .....+++.+++.++..+.+...+...... -..+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222 223578999999999999988876443322 12456777889999987543
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00079 Score=87.06 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=86.1
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-c-----CccEEEEeehhhhccCCHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-F-----EGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
+.++||+++++++.+.|... ...-+.++|++|+|||++|+.++.++... - ...+|..+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l---------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL---------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH----------
Confidence 46899999999999999743 23345799999999999999999877532 1 133444332111
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCHH---------HHHHHh-cccCCCCCCcEEEEEeCC
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDLK---------QLESLA-GEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~---------~l~~l~-~~~~~~~~gs~IIiTTR~ 333 (1214)
+ .... -..+.++.+..+.+.+ ..++++|++|+++..- ....++ +.+. ...-++|.+|..
T Consensus 247 ---~----ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 247 ---L----AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred ---h----ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 1 0000 0112222222222222 3578999999996321 122222 2221 123455655554
Q ss_pred cchhh------hc-CccceeecCCCCHHHHHHHHHHh
Q 000943 334 EHLLT------TY-GVDEVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 334 ~~v~~------~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
..... .+ .....++++..+.++...++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43211 11 12246788999999988887653
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0094 Score=73.94 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=106.7
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc-CccEEEEeehhhhccCCHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF-EGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
....++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-... .... ....+.....+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~~i 84 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCRAI 84 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHHHH
Confidence 34678999999999988887532 235678999999999999999998664321 1000 0000111111111
Q ss_pred HHhh----hcCCCCCcccccchHHHHHHH---h-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 268 LSQL----LKLPDSGIWDVYDGLKMIGTR---L-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 268 l~~l----l~~~~~~~~~~~~~~~~l~~~---L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
.... ....... ...++.+++. + .+++-++|+|+++.. +....|...+........+|++|.+
T Consensus 85 ~~g~h~D~~ei~~~~----~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 85 AAGNALDVIEIDAAS----NTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred hcCCCccEEEEeccc----cCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 1110 0000000 0111222211 1 245568899999954 4456666555433445555555544
Q ss_pred c-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 334 E-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 334 ~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
. .+.... .....+++..++.++....+.+.+....... ..+.+..+++.++|.+..+.
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 3 333322 2235788899999999888877664432221 13457789999999875443
No 153
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=2.9e-05 Score=82.54 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=38.9
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecC--cccCCCCCCCEEeecCCcCCCccc
Q 000943 849 LCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLP--ESISCLSKLWIIDLEECKRLQSLS 915 (1214)
Q Consensus 849 l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~C~~L~~lp 915 (1214)
+|++..+-+..|.+.+..--.....++++-.|+|+.|++.+.. +.+..++.|.-|.+++.+....+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 3455555555565544333334445566666777777666443 356667777777777766555554
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.004 Score=70.01 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=72.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcc-c-CccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHE-F-EGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..+.++|++|.||||+|+.+++..... + ...-|+. + + .. .+.....+... ......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v---~----~~----~l~~~~~g~~~------~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-V---T----RD----DLVGQYIGHTA------PKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-e---c----HH----HHHHHHhccch------HHHHHHHHH-
Confidence 357899999999999999998865321 1 1111222 1 1 11 12222111110 011112222
Q ss_pred hCCCcEEEEEeCCCCH-----------HHHHHHhcccCCCCCCcEEEEEeCCcchhh------hc--CccceeecCCCCH
Q 000943 293 LRYRRVLLIIDDAFDL-----------KQLESLAGEREWFGPGSRIIITSRDEHLLT------TY--GVDEVLKLKELHD 353 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~------~~--~~~~~~~l~~L~~ 353 (1214)
. ..-+|+||+++.. +....|...........+||+++....... .+ .....+++++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 1 2348999999742 234444444433345567777775433211 11 2345899999999
Q ss_pred HHHHHHHHHhhhcC
Q 000943 354 DEALQLFCKKAFKT 367 (1214)
Q Consensus 354 ~ea~~Lf~~~a~~~ 367 (1214)
+|..+++...+-..
T Consensus 199 ~el~~I~~~~l~~~ 212 (287)
T CHL00181 199 EELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887443
No 155
>CHL00176 ftsH cell division protein; Validated
Probab=97.48 E-value=0.0021 Score=79.70 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=98.7
Q ss_pred ccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++++|.++..+++.+.+.. +..-.+-|.++|++|.|||++|++++......| +.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s------- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGS------- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHH-------
Confidence 46788988877777666541 112245689999999999999999988653222 111110
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCC--
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWF-- 321 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~-- 321 (1214)
.+.... .+. ........+.......+.+|+||+++... .+..+....+.+
T Consensus 251 --~f~~~~----~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 --EFVEMF----VGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHh----hhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 111100 000 00111233444456788999999997431 133344333221
Q ss_pred CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCC
Q 000943 322 GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGG 387 (1214)
Q Consensus 322 ~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 387 (1214)
..+-.||.||.....+.. ...+..+.++..+.++-.+++..++...... .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 245567777766433221 1235688999999999999998887442211 12234567777776
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0043 Score=70.52 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=107.2
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc---------------cCccEEEEeehhhh
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE---------------FEGSSFLANVREIS 255 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------F~~~~~~~~~~~~~ 255 (1214)
..++|.+...+.+...+..+ .-.....++|+.|+||+++|.++++.+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999998888653 235788999999999999999998865221 2233333311000
Q ss_pred ccCCHHHHHHHHHHhhh-cCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEE
Q 000943 256 EKGGLISLQKQLLSQLL-KLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRI 327 (1214)
Q Consensus 256 ~~~~~~~l~~~ll~~ll-~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~I 327 (1214)
...... ...+.... .......-.+++ +..+.+.+ .+++-++|+|+++... ....|+..+.... .+.+
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 00000000 000000000111 22233333 3466789999998543 3445554443334 4455
Q ss_pred EEEeC-Ccchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 328 IITSR-DEHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 328 IiTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
|++|. ...+++.. .....+++.++++++..+.+......... ......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-----hhHHHHHHHHcCCCHHHHHHH
Confidence 55554 44444433 23468999999999999999876421111 111357889999999765543
No 157
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.48 E-value=9.8e-05 Score=80.60 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=60.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc-ccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCccc-----ccchHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH-EFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWD-----VYDGLK 287 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~-----~~~~~~ 287 (1214)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+ +..++.++++++...+.......... .....+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997644 6888888874432 23577888888743332221111111 111122
Q ss_pred HHHHH-hCCCcEEEEEeCCCCHH
Q 000943 288 MIGTR-LRYRRVLLIIDDAFDLK 309 (1214)
Q Consensus 288 ~l~~~-L~~kr~LlVLDdv~~~~ 309 (1214)
..+.. -.++++++++|++....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 22222 24799999999997543
No 158
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0034 Score=66.57 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=108.3
Q ss_pred cccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhh
Q 000943 193 LVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLL 272 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll 272 (1214)
+++...+-+.+..+-..-.++.+++.++|.-|.|||.++++....+-+.=-..+.+. .+..+...+...+..++.
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhc
Confidence 344444444444333333456679999999999999999955443332211222222 233455666677776644
Q ss_pred cCCCCCcccccchHHHHHHHh-----CCCc-EEEEEeCCCCH--HHHHH---HhcccCCCCCCcEEEEEeCCcchhh---
Q 000943 273 KLPDSGIWDVYDGLKMIGTRL-----RYRR-VLLIIDDAFDL--KQLES---LAGEREWFGPGSRIIITSRDEHLLT--- 338 (1214)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~L-----~~kr-~LlVLDdv~~~--~~l~~---l~~~~~~~~~gs~IIiTTR~~~v~~--- 338 (1214)
.. ...........+.+.| ++++ +.+++|+.++. +.++. +...-...+.--+|+..-.. .+..
T Consensus 105 ~~---p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp-~L~~~lr 180 (269)
T COG3267 105 SQ---PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP-KLRPRLR 180 (269)
T ss_pred cC---ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc-ccchhhc
Confidence 31 1222332222222222 4566 99999999854 23333 33222222222234433222 1111
Q ss_pred -----hc--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHH-HHHHHHHHHHhCCChHHHHHHHh
Q 000943 339 -----TY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEY-EQLSKYVVKYSGGLPLALSVLGS 397 (1214)
Q Consensus 339 -----~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLAl~~lg~ 397 (1214)
.. .+.-.|++.+++.++...++.++..+...+.+-+ .+....|.....|.|.++..++.
T Consensus 181 ~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 181 LPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11 1222399999999999999988875554433322 34566788899999999987764
No 159
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.47 E-value=0.00013 Score=73.75 Aligned_cols=64 Identities=30% Similarity=0.390 Sum_probs=56.9
Q ss_pred EEEccccccc-cccHHHHHHHHHHhC-CCceEecCccccC--CCccchHHHHHhhhccEEEEEecCCc
Q 000943 16 VFLSFRGEDT-RKNFTDHLCAALDQK-GIIVFRDDKELER--GKSISPGLFKAIEESRISIIVFSRNY 79 (1214)
Q Consensus 16 vFiS~~~~d~-~~~f~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~ai~~s~~~i~v~S~~y 79 (1214)
|||||+.+.. ...+|..|++.|++. |+.|.+|.++... +..+..++.+++++++.+|+|+||.|
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 9999988653 357899999999999 9999999999854 77899999999999999999999655
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=0.0018 Score=83.73 Aligned_cols=153 Identities=11% Similarity=0.101 Sum_probs=86.1
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
-+.++||+.+++++.+.|... ...-+.++|.+|+|||++|+.++.++.... ...++..++........
T Consensus 177 l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~---- 250 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK---- 250 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc----
Confidence 356999999999999998753 234566999999999999999999775421 23333332222110000
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh--CCCcEEEEEeCCCCHH---------HHHH-HhcccCCCCCCcEEEEEe
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL--RYRRVLLIIDDAFDLK---------QLES-LAGEREWFGPGSRIIITS 331 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~---------~l~~-l~~~~~~~~~gs~IIiTT 331 (1214)
...+..+.+..+.+.+ .+++++|++|+++... +... |.+.+. ...-++|-+|
T Consensus 251 --------------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaT 314 (857)
T PRK10865 251 --------------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGAT 314 (857)
T ss_pred --------------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcC
Confidence 0001112222222221 2578999999998542 1222 333321 1234555555
Q ss_pred CCcchh------hhc-CccceeecCCCCHHHHHHHHHHhh
Q 000943 332 RDEHLL------TTY-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 332 R~~~v~------~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
...... ... .....+.+...+.++..+++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 443321 111 112356777789999999886554
No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0024 Score=76.17 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=85.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
.-+.|+|+.|+|||+||+++++.+......++|+. . ..+...+...+ .. ...+.++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~~~~~~l-~~---------~~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTEHLVSAI-RS---------GEMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHHHHHHHH-hc---------chHHHHHHHcc
Confidence 45789999999999999999998765433444443 1 12222333332 11 01233444443
Q ss_pred CCcEEEEEeCCCCHHH----HHHHhcccC-CCCCCcEEEEEeCCc-c--------hhhhcCccceeecCCCCHHHHHHHH
Q 000943 295 YRRVLLIIDDAFDLKQ----LESLAGERE-WFGPGSRIIITSRDE-H--------LLTTYGVDEVLKLKELHDDEALQLF 360 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~~----l~~l~~~~~-~~~~gs~IIiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf 360 (1214)
+.-+|++||++.... .+.+...+. ....|..||+||... . +...+.....+++.+++.++..+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 345788899875321 122222111 012456788888542 1 1222333468899999999999999
Q ss_pred HHhhhcCCCCchHHHHHHHHHHHHhCCC
Q 000943 361 CKKAFKTHQPWKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 388 (1214)
.+.+-..... -.+++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 8887443221 1134455565655543
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.0013 Score=85.36 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=86.7
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.+.++||+.+++++...|... ....+.++|++|+|||++|+.++.++...+ ...+|..++...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l--------- 240 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL--------- 240 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH---------
Confidence 356999999999999998753 234456899999999999999998875432 223333322111
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh--CCCcEEEEEeCCCCHH---------HHHHHhcccCCCCCCcEEEEEeC
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL--RYRRVLLIIDDAFDLK---------QLESLAGEREWFGPGSRIIITSR 332 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~---------~l~~l~~~~~~~~~gs~IIiTTR 332 (1214)
+.. .. ...+....+..+.+.+ .+++.+|++|+++... +...++..... ...-++|-+|.
T Consensus 241 ----~a~----~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt 310 (852)
T TIGR03346 241 ----IAG----AK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATT 310 (852)
T ss_pred ----hhc----ch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCc
Confidence 000 00 0011222222232232 2468999999998442 12222222111 12234555554
Q ss_pred Ccchhh------hc-CccceeecCCCCHHHHHHHHHHhh
Q 000943 333 DEHLLT------TY-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 333 ~~~v~~------~~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
....-. .+ .....+.++..+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 332211 00 122467899999999999887653
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0044 Score=75.19 Aligned_cols=153 Identities=13% Similarity=0.184 Sum_probs=89.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccC-c-cEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFE-G-SSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~-~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..+.|+|..|.|||.|++++++.+...+. . +.|+. . ..+..++...+.. .....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a---------eef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S---------EEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHHHHHHHHHHh----------ccHHHHHHH
Confidence 44889999999999999999998765432 2 23433 1 2233333333211 012334444
Q ss_pred hCCCcEEEEEeCCCCH---HHH-HHHhcccC-CCCCCcEEEEEeCCc---------chhhhcCccceeecCCCCHHHHHH
Q 000943 293 LRYRRVLLIIDDAFDL---KQL-ESLAGERE-WFGPGSRIIITSRDE---------HLLTTYGVDEVLKLKELHDDEALQ 358 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~---~~l-~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 358 (1214)
++. .=+|||||++.. +.+ +.+...+. ....|..|||||+.. .+...+...-+++++..+.+.-.+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 443 357888999743 111 22222111 113466788888763 222223445689999999999999
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 359 LFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 359 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
++.+++....-. -.+++++-|++.+.+..-
T Consensus 454 IL~kka~~r~l~--l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 454 ILRKKAVQEQLN--APPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHHhccCCHH
Confidence 999887543322 124556666666665543
No 164
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.39 E-value=0.0049 Score=68.71 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=99.5
Q ss_pred ccCcccchhhHHHHHHHHhhhcCC-cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNG-VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
.+++.+|+.++..+..++...+.. +..|.|+|-+|.|||.+.+++.+... ...+|+. .-..+....+..+++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHH
Confidence 467889999999999999865543 45568999999999999999988662 2456776 334566777888888
Q ss_pred Hhhh-cCCCCCc-----ccccchHHHHHH--HhC--CCcEEEEEeCCCCHHHHH-----HHhcccCCCCCCcEEEEEeCC
Q 000943 269 SQLL-KLPDSGI-----WDVYDGLKMIGT--RLR--YRRVLLIIDDAFDLKQLE-----SLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 269 ~~ll-~~~~~~~-----~~~~~~~~~l~~--~L~--~kr~LlVLDdv~~~~~l~-----~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
.+.. ...+... .+....+..+.+ ... ++.++||||+++...+.+ .+...........-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 8753 1111111 111111222322 122 468999999998655422 222111111122334444433
Q ss_pred c---chhhhcCcc--ceeecCCCCHHHHHHHHHHh
Q 000943 334 E---HLLTTYGVD--EVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 334 ~---~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
. .-...++.. .++..+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 112212333 35566888999999988654
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0017 Score=71.80 Aligned_cols=173 Identities=15% Similarity=0.223 Sum_probs=104.0
Q ss_pred cCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
...=|-++++++|.+.... +-..++=|.+||++|.|||-||++|+++....| +..+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 4455788888888776541 223467789999999999999999999775544 33221
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCHH----------------HHHHHhcccCCCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDLK----------------QLESLAGEREWFG 322 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~ 322 (1214)
.++.+..+ ++. ...+..+.+.. ...+..|.+|.++... .+-+|+..++-|.
T Consensus 219 -SElVqKYi----GEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 219 -SELVQKYI----GEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred -HHHHHHHh----ccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 12222222 111 11122222222 3578999999987321 1334555555444
Q ss_pred --CCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHHhCCChHH
Q 000943 323 --PGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPW-KEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 323 --~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLA 391 (1214)
..-+||..|-...++.. -..++.++++.-+.+.-.+.|.-|+.+-.-.. -+++ .+++.+.|.--|
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGA 359 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGA 359 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchH
Confidence 35688888866544332 24568899997788888888888875443321 2333 355666665433
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0068 Score=74.62 Aligned_cols=187 Identities=15% Similarity=0.147 Sum_probs=105.0
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++|.+...+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-... ...-+.-.....+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICKAIT 83 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHHHHh
Confidence 3478999999999999888753 2356677899999999999999988653211000 00000000011110
Q ss_pred HhhhcCCCCCcccc----cchHH---HHHHH-----hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeC-C
Q 000943 269 SQLLKLPDSGIWDV----YDGLK---MIGTR-----LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSR-D 333 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~----~~~~~---~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR-~ 333 (1214)
.. ...+.... ...++ .+.+. ..+++-++|+|+++.. .....|...+........+|++|. .
T Consensus 84 ~g----~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 84 NG----SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cC----CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00 00000000 01111 12222 1346678899999854 446666655443344555555553 3
Q ss_pred cchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 334 EHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 334 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
..+.... .....+++.+++.++..+.+...+-...... ..+.+..|++.++|.+..
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 3333222 2235788999999999998888764433221 135567788888887643
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0057 Score=69.98 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=60.9
Q ss_pred CcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCc
Q 000943 296 RRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPW 371 (1214)
Q Consensus 296 kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (1214)
++-++|+|+++.. +....|...+....+++.+|+||.+. .+++.. .-...+.+.+++.+++.+.+.... . ...
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ESD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cCC-
Confidence 3445577999954 44555655554445677888888775 333332 223579999999999999997653 1 111
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHH
Q 000943 372 KEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.+.+..++..++|.|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 234556788999999765544
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=8e-05 Score=79.32 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=24.0
Q ss_pred CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe
Q 000943 848 GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI 888 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~ 888 (1214)
.+|.+-.|+|+.+++-+-.--+.+..+++|..|.++++.+.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34555566677766643222344566677777777766543
No 169
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.012 Score=72.91 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=105.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-c-Cc-cEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-F-EG-SSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
...++||.+.-.+.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . .. .|-.+ ....
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~c~ 80 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PPCV 80 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HHHH
Confidence 3468999998888888888643 234667899999999999999998865321 1 00 00000 0000
Q ss_pred HHHHh----h--h-cCCCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-c
Q 000943 266 QLLSQ----L--L-KLPDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-E 334 (1214)
Q Consensus 266 ~ll~~----l--l-~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~ 334 (1214)
.+... + + +.......++.+..+.+... ..+++-++|+|+++.. .....|...+....+...+|++|.+ .
T Consensus 81 ~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred HHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 00000 0 0 00000011111111111100 1234557899999854 3355555554443456666655544 4
Q ss_pred chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHH
Q 000943 335 HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVL 395 (1214)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~l 395 (1214)
.+.... .....+++.+++.++....+...+-..... -..+.+..+++.++|.. .|+..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 443332 223578899999999988887765333221 12355677888998865 454444
No 170
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.31 E-value=0.00021 Score=55.16 Aligned_cols=33 Identities=36% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCcEEeCCCCCCeecCcccCCCCCCCEEeecCC
Q 000943 876 SLKELCLSKNKFILLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 876 sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C 908 (1214)
+|++|+|++|+++.+|..+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 345555555555555544555555555555554
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0021 Score=75.64 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=87.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCC
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRY 295 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~ 295 (1214)
++.|.|+.++||||+++.+.....+. .+++...........+ .+.+. .+...-..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~------------------~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLR------------------AYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHH------------------HHHHhhcc
Confidence 99999999999999997665544443 4444421111111111 11111 11111112
Q ss_pred CcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhh-----c-CccceeecCCCCHHHHHHHHHHhhhcCCC
Q 000943 296 RRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTT-----Y-GVDEVLKLKELHDDEALQLFCKKAFKTHQ 369 (1214)
Q Consensus 296 kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 369 (1214)
++..|+||.|+....|+..+..+...++. +|+||+-+...... + |-...+++-||+-.|-..+-...+ .
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~ 168 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E 168 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c
Confidence 78899999999999999888777655666 89998877544322 1 334688999999998876532000 0
Q ss_pred CchHHHHHHHHHHHHhCCChHHHHH
Q 000943 370 PWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 370 ~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
...... .-+-.-..||.|-++..
T Consensus 169 -~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 -PSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred -hhHHHH-HHHHHHHhCCCcHHHhC
Confidence 001111 12223346899987764
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.0015 Score=64.18 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 000943 217 IGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.27 E-value=0.004 Score=76.15 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=96.1
Q ss_pred cccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..++++|.+...+++.+++.. +....+-+.++|++|.|||++|++++......| +..+.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~------- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG------- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH-------
Confidence 346788988877766655441 112345688999999999999999987653222 11111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCC-
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWF- 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~- 321 (1214)
..+. ....+. ........+.......+.+|+||+++... .+..+....+.+
T Consensus 122 --~~~~----~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 --SDFV----EMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHH----HHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 0111 110000 00111222333334577899999996421 122333332211
Q ss_pred -CCCcEEEEEeCCcchhh-h----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 322 -GPGSRIIITSRDEHLLT-T----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 322 -~~gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
..+-.||.||.....+. . ...+..++++..+.++..++|..++....... ......+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 23445666665543222 1 13457899999999999999988764332221 112346777777743
No 174
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.26 E-value=0.051 Score=62.71 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=69.0
Q ss_pred CcEEEEEeCCCCH-----------HHHHHHhcccCCCCCCcEEEEEeCCcchhh----hc--CccceeecCCCCHHHHHH
Q 000943 296 RRVLLIIDDAFDL-----------KQLESLAGEREWFGPGSRIIITSRDEHLLT----TY--GVDEVLKLKELHDDEALQ 358 (1214)
Q Consensus 296 kr~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~ 358 (1214)
++-+||+||+... .+|...+.. .+=.+||++|-+..... .+ .+.+.+.|...+++.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3678999998632 234443333 35678999998854433 33 344788999999999999
Q ss_pred HHHHhhhcCCCC-------------c-----hHHHHHHHHHHHHhCCChHHHHHHHhhhCC
Q 000943 359 LFCKKAFKTHQP-------------W-----KEYEQLSKYVVKYSGGLPLALSVLGSFLCG 401 (1214)
Q Consensus 359 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~ 401 (1214)
+...+....... . ..........++.+||=-.=|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887443110 0 123444566788889988888888888865
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.002 Score=81.33 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=85.5
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++...- ...+|..+ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~---- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------I---- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------H----
Confidence 469999999999999887532 23456899999999999999998663321 12222211 1
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCH----------HHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDL----------KQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
..++.. . .-..+.+.....+.+.+ +.++.+|++|+++.. .+...+..+... ...-+||-+|..
T Consensus 251 ~~llaG---~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAG---T--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_pred HHHhcc---c--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCCh
Confidence 111110 0 00112222333333333 346789999999743 122222222111 123445555543
Q ss_pred cchhhh------c-CccceeecCCCCHHHHHHHHHHhh
Q 000943 334 EHLLTT------Y-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 334 ~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
...... + .--..++++.++.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 322111 0 112478999999999999987654
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.21 E-value=0.00029 Score=54.37 Aligned_cols=40 Identities=33% Similarity=0.516 Sum_probs=33.7
Q ss_pred CCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecC
Q 000943 850 CSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLP 891 (1214)
Q Consensus 850 ~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp 891 (1214)
++|++|+|++|++.+ +|..++.|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 478999999999975 8888999999999999999988776
No 177
>PRK08116 hypothetical protein; Validated
Probab=97.20 E-value=0.0025 Score=70.86 Aligned_cols=102 Identities=22% Similarity=0.167 Sum_probs=56.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
..+.++|.+|+|||.||.++++.+..+...++|+. + ..+...+.... .... ......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~---------~~ll~~i~~~~-~~~~------~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F---------PQLLNRIKSTY-KSSG------KEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H---------HHHHHHHHHHH-hccc------cccHHHHHHHhc
Confidence 45889999999999999999998866533444443 1 22333333221 1100 111223444455
Q ss_pred CCcEEEEEeCCC--CHHHH--HHHhcccC-CCCCCcEEEEEeCCc
Q 000943 295 YRRVLLIIDDAF--DLKQL--ESLAGERE-WFGPGSRIIITSRDE 334 (1214)
Q Consensus 295 ~kr~LlVLDdv~--~~~~l--~~l~~~~~-~~~~gs~IIiTTR~~ 334 (1214)
+-. ||||||+. ...+| +.+...+. ....+..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999994 22222 22222111 123566799999743
No 178
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.00081 Score=77.01 Aligned_cols=95 Identities=13% Similarity=0.052 Sum_probs=63.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccc-----cchHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDV-----YDGLK 287 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~-----~~~~~ 287 (1214)
-..++|+|++|.|||||++.+++.+... |+..+|+..+.+ +...+.++++.++..+........... ....+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4678999999999999999999977655 888888875533 235788888888655433322221111 11112
Q ss_pred HHHHH-hCCCcEEEEEeCCCCHHH
Q 000943 288 MIGTR-LRYRRVLLIIDDAFDLKQ 310 (1214)
Q Consensus 288 ~l~~~-L~~kr~LlVLDdv~~~~~ 310 (1214)
..+.. -.+++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 22222 357999999999986543
No 179
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.0072 Score=69.16 Aligned_cols=203 Identities=21% Similarity=0.223 Sum_probs=115.6
Q ss_pred ccccCcccchhhHHHHHHHHhh--hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCc--cEEEEeehhhhccCCHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDK--ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG--SSFLANVREISEKGGLISL 263 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l 263 (1214)
..+..++||+.+++.+.+++.. +.+....+-|.|-+|.|||.+...++......... ++++... .-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~----sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT----SLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec----cccchHHH
Confidence 3567899999999999999873 34556778899999999999999999876554433 3454411 11334556
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhCC--CcEEEEEeCCCCHHH--HHHHhcccCCC-CCCcEEEEEeCC-----
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRY--RRVLLIIDDAFDLKQ--LESLAGEREWF-GPGSRIIITSRD----- 333 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~--l~~l~~~~~~~-~~gs~IIiTTR~----- 333 (1214)
...++..+.......... .+....+...... ..+|+|+|.++.... -+.+...+.|- -+++|+|+.---
T Consensus 223 F~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 666666653322222211 2223444444443 369999999886532 11122222221 256666643311
Q ss_pred -cchhhhcC-----ccceeecCCCCHHHHHHHHHHhhhcCCCC---chHHHHHHHHHHHHhCCChHHHHHH
Q 000943 334 -EHLLTTYG-----VDEVLKLKELHDDEALQLFCKKAFKTHQP---WKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 334 -~~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
...+..+. ....+..++-+.++..+.|..+.-..... +...+-.|++++...|.+--|+.+.
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 11122221 23567788999999999999886332221 1223333444444444444454444
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0039 Score=71.98 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=83.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
....+.|||..|.|||.|++++.+......+...++.. . ......++...+.. ...+..++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----~----se~f~~~~v~a~~~----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----T----SEDFTNDFVKALRD----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----c----HHHHHHHHHHHHHh----------hhHHHHHHh
Confidence 35678999999999999999999988777664433321 1 12222333333221 124556665
Q ss_pred hCCCcEEEEEeCCCCHH---H-HHHHhcccC-CCCCCcEEEEEeCCc---------chhhhcCccceeecCCCCHHHHHH
Q 000943 293 LRYRRVLLIIDDAFDLK---Q-LESLAGERE-WFGPGSRIIITSRDE---------HLLTTYGVDEVLKLKELHDDEALQ 358 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~---~-l~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 358 (1214)
. .-=++++||++-.. . -+.+...+. ....|-.||+|++.. .+...+...-++++.+++.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 5 34478899997421 1 222222221 113455899998652 222333455789999999999999
Q ss_pred HHHHhhhcCC
Q 000943 359 LFCKKAFKTH 368 (1214)
Q Consensus 359 Lf~~~a~~~~ 368 (1214)
.+.+.+....
T Consensus 252 iL~kka~~~~ 261 (408)
T COG0593 252 ILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhcC
Confidence 9988764433
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.12 E-value=0.0068 Score=62.80 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=39.2
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...++||-++-++.+.-... +.+.+-+.|.||+|+||||-+..+++++-
T Consensus 25 ~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 34678999988888876554 34677788999999999999999888663
No 182
>PRK12377 putative replication protein; Provisional
Probab=97.11 E-value=0.012 Score=64.27 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=29.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+...+.++|.+|+|||.||.++++.+......+.|+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3467889999999999999999998876655555554
No 183
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00015 Score=90.50 Aligned_cols=108 Identities=26% Similarity=0.333 Sum_probs=72.4
Q ss_pred CCCcEEecCCCCCCC-ccCccc--ccccccceecccccCC-CCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEE
Q 000943 675 KNLVSVNLKDCTDLT-TLPNKI--AMIHLRKLVLSGCSKL-KKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILL 750 (1214)
Q Consensus 675 ~~L~~L~L~~c~~l~-~lp~~~--~l~~L~~L~Ls~c~~l-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 750 (1214)
.+|++|++++...+. ..|..+ .+|+|++|.++|-... ..+.....++++|..||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 456666665533221 122223 5788888888774322 23455567889999999999999988 678899999999
Q ss_pred ecCCCCCCC-cCCcccCCCCCCCEEEecCCCCCC
Q 000943 751 NLEKCTHLV-GLPSTINDLTSLITLNLSGCSKSK 783 (1214)
Q Consensus 751 ~L~~c~~l~-~lp~~l~~L~sL~~L~ls~c~~l~ 783 (1214)
.+.+-.... .--..+.+|++|+.||+|......
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 887744332 111246789999999998766543
No 184
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.10 E-value=0.0087 Score=66.01 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=108.4
Q ss_pred cCcccch---hhHHHHHHHHhhh-cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCc------cEEEEeehhhhccCCH
Q 000943 191 KDLVGID---SRWKKLRFLIDKE-LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG------SSFLANVREISEKGGL 260 (1214)
Q Consensus 191 ~~~vGr~---~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~~~~~~~ 260 (1214)
+.+||-. .-++.|.+++... ....+-+.|+|.+|+|||++++++++.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 3455533 3456667777632 2345678999999999999999999866444432 22222 4556788
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCC-CcEEEEEeCCCCHH-----HHHHHhcccCCCC---CCcEEEEEe
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRY-RRVLLIIDDAFDLK-----QLESLAGEREWFG---PGSRIIITS 331 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-----~l~~l~~~~~~~~---~gs~IIiTT 331 (1214)
..+...++..+... .............+.+.++. +--+||+|.+++.- +-+.+...+...+ .=+-|.+-|
T Consensus 110 ~~~Y~~IL~~lgaP-~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEALGAP-YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHhCcc-cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 89999999995433 32233344444444455543 45589999998641 1222222211112 234455555
Q ss_pred CCc--------chhhhcCccceeecCCCCHHH-HHHHHHHhhh--cCCCC-chHHHHHHHHHHHHhCCChHHHH
Q 000943 332 RDE--------HLLTTYGVDEVLKLKELHDDE-ALQLFCKKAF--KTHQP-WKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 332 R~~--------~v~~~~~~~~~~~l~~L~~~e-a~~Lf~~~a~--~~~~~-~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
++. +.+.. ...+.++....++ ...|+..... .-..+ .-...++++.|...++|+.--+.
T Consensus 189 ~~A~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 189 REAYRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 542 22222 1355666655443 4444433221 11111 12346788999999999875443
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.0031 Score=77.64 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=42.2
Q ss_pred ccccCcccchhhHHHHHHHHhhhc---CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKEL---NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+.++|-+..++++..++.... ...+++.|+|++|.||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345789999999999999987432 3456899999999999999999987553
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.99 E-value=0.0019 Score=63.84 Aligned_cols=28 Identities=39% Similarity=0.382 Sum_probs=24.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
+.+.|+|++|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5788999999999999999988765544
No 187
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.95 E-value=0.023 Score=64.20 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc--CCHHHHHHHHHHhhhcCCCCCcccccchHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK--GGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI 289 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~--~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l 289 (1214)
..++.++|||++|.|||.+|++++..+...| +..+..+.... .......++++.. .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~------------------A 203 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYRE------------------A 203 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHH------------------H
Confidence 4578999999999999999999999875543 33222222111 1111222222221 1
Q ss_pred HHH--hCCCcEEEEEeCCCCH------------HHH--HHHhcccC----------C----CCCCcEEEEEeCCcchhhh
Q 000943 290 GTR--LRYRRVLLIIDDAFDL------------KQL--ESLAGERE----------W----FGPGSRIIITSRDEHLLTT 339 (1214)
Q Consensus 290 ~~~--L~~kr~LlVLDdv~~~------------~~l--~~l~~~~~----------~----~~~gs~IIiTTR~~~v~~~ 339 (1214)
++. -++++++|++|+++.. .++ ..|+...+ | ..++--||+||.+...+..
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 111 1468999999998721 111 23332111 1 2355677888877654333
Q ss_pred c-----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH
Q 000943 340 Y-----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL 390 (1214)
Q Consensus 340 ~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 390 (1214)
. .-++.|. ..+.++-.+++..+.-+...+ .....++++...|-|+
T Consensus 284 ALlRpGRfDk~i~--lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEKFYW--APTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCceeC--CCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 1 2233443 456777777776665333222 2334456777666654
No 188
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.0028 Score=70.04 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=28.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..-+.++|++|+|||.||.++++....+.-.+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 345899999999999999999987765544455554
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.075 Score=60.36 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCC-cchhhhcC-ccceeecCCCCHHHHHHHHHHhhhcCCCC
Q 000943 295 YRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRD-EHLLTTYG-VDEVLKLKELHDDEALQLFCKKAFKTHQP 370 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 370 (1214)
+++-++|+|+++... ....|+..+..-.+++.+|++|.. ..+++... -...+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 456689999998653 344555544444567777777765 34443332 23578999999999999886531 11
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 371 WKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 2235678999999998765443
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.041 Score=62.38 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhcC-ccceeecCCCCHHHHHHHHHHhhhcCCCC
Q 000943 295 YRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTYG-VDEVLKLKELHDDEALQLFCKKAFKTHQP 370 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 370 (1214)
+++=++|+|+++.. .....|...+..-.+++.+|++|.+. .+++... -...+.+.+++.+++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 34568899999864 34555655555446677777776654 4444432 23588999999999999886542 11
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHH
Q 000943 371 WKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.+..++..++|.|+....+
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999876554
No 191
>PRK10536 hypothetical protein; Provisional
Probab=96.84 E-value=0.0071 Score=65.39 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=73.1
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH-H-hcccCccEEEEeehhhhc-----cCCHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL-I-AHEFEGSSFLANVREISE-----KGGLIS 262 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~~~-----~~~~~~ 262 (1214)
...+.+|......+..++.. ..+|.+.|++|.|||+||.+++.. + ...|...+.....-+... ..++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 34567788888887777753 348999999999999999998873 4 344443333221111111 011212
Q ss_pred HHHH-------HHHhhhcCCCCC-cc--cccchHHHHHHHhCCCc---EEEEEeCCCCH--HHHHHHhcccCCCCCCcEE
Q 000943 263 LQKQ-------LLSQLLKLPDSG-IW--DVYDGLKMIGTRLRYRR---VLLIIDDAFDL--KQLESLAGEREWFGPGSRI 327 (1214)
Q Consensus 263 l~~~-------ll~~ll~~~~~~-~~--~~~~~~~~l~~~L~~kr---~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~I 327 (1214)
-... .+..+++..... .. ......-.-...+++.. -+||+|.+++. .+...+... .+.+|+|
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 1111 111111110000 00 00000000112345544 49999999854 556666654 3799999
Q ss_pred EEEeCCcc
Q 000943 328 IITSRDEH 335 (1214)
Q Consensus 328 IiTTR~~~ 335 (1214)
|+|--..+
T Consensus 207 v~~GD~~Q 214 (262)
T PRK10536 207 IVNGDITQ 214 (262)
T ss_pred EEeCChhh
Confidence 99876543
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=96.83 E-value=0.0037 Score=69.24 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=25.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
...+.|+|++|+|||+||.+++......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35678999999999999999987654333233343
No 193
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.015 Score=74.57 Aligned_cols=172 Identities=13% Similarity=0.175 Sum_probs=95.8
Q ss_pred cCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehH-------
Confidence 5577888887777766541 112345688999999999999999998765332 221111
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHH-HHHHHhCCCcEEEEEeCCCCHH--------------HHHHHhcccCCC--C
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLK-MIGTRLRYRRVLLIIDDAFDLK--------------QLESLAGEREWF--G 322 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~~--~ 322 (1214)
+++....+. .+..+. .+...-...+.+|++|+++... .+..++..++.. .
T Consensus 522 ------~l~~~~vGe-------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 ------EILSKWVGE-------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ------HHhhcccCc-------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111110 011122 2222234578999999986421 123343333311 2
Q ss_pred CCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 323 PGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 323 ~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
.+..||.||.....+.. . ..+..+.++..+.++..++|..+..+...... .....+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 34556667765543322 1 34578899999999999999776533222111 11344666676654
No 194
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.83 E-value=0.11 Score=67.81 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=40.6
Q ss_pred ccCcccchhhHHHHHHHHhhhc------C-CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKEL------N-GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++|.+..++.+...+.... + ...++.+.|+.|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999988887421 1 2457889999999999999999986643
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.018 Score=66.23 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=85.3
Q ss_pred Cccc-chhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--cCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 192 DLVG-IDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--FEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 192 ~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+++.+-.. ..... .+.-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-----------cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-----------CGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CCcCHHHHHHh
Confidence 4566 555666777776532 335677899999999999999998865321 11000 00000000000
Q ss_pred Hh----h--hcCCCCCcccccchHHHHHHH-----hCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-
Q 000943 269 SQ----L--LKLPDSGIWDVYDGLKMIGTR-----LRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE- 334 (1214)
Q Consensus 269 ~~----l--l~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~- 334 (1214)
.. + +. .+.....+++..+ +.+. ..+++=++|+|+++.. +....|...+....+++.+|++|.+.
T Consensus 74 ~~~hpD~~~i~-~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 74 SGNHPDVHLVA-PDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred cCCCCCEEEec-cccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 00 0 00 0000001111111 1111 2245557899999854 33555665555446777788777664
Q ss_pred chhhhc-CccceeecCCCCHHHHHHHHHHh
Q 000943 335 HLLTTY-GVDEVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
.+.+.. .....+++.+++.++..+.+...
T Consensus 152 ~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 152 QILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 333332 23468999999999998888653
No 196
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.80 E-value=0.11 Score=66.54 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=39.1
Q ss_pred ccCcccchhhHHHHHHHHhhh------cC-CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE------LN-GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...++|.+..++.+...+... .+ ...++.++|+.|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 466899999999888877632 11 234678999999999999999998763
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.011 Score=73.34 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=73.1
Q ss_pred ccCcccchhhHHHHHHHHhhh-------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE-------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
....+|-+..++.+.+.+... ..........|+.|+|||.||++++..+-..=+..+-+ +.++....+.+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsV-- 566 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSV-- 566 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHH--
Confidence 467899999999998887632 12356778899999999999999998664322333333 34444433333
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcE-EEEEeCCCC--HHHHHHHhcccC
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRV-LLIIDDAFD--LKQLESLAGERE 319 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~--~~~l~~l~~~~~ 319 (1214)
+.+.+.+..-... ++ -..+-+..+++++ +|.||.|+. ++-..-|...++
T Consensus 567 ------SrLIGaPPGYVGy-ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 567 ------SRLIGAPPGYVGY-EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ------HHHhCCCCCCcee-cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 3333333222211 11 2334455667877 788899984 455666655554
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.77 E-value=0.014 Score=70.23 Aligned_cols=176 Identities=18% Similarity=0.104 Sum_probs=92.9
Q ss_pred ccCcccchhhHHHHHHHH---hh-----hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHH
Q 000943 190 FKDLVGIDSRWKKLRFLI---DK-----ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLI 261 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 261 (1214)
..++.|.+...+.+.... .. +-...+-|.++|++|.|||.+|+++++.+... ++..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHH--------
Confidence 356778776665554422 11 11335678999999999999999998876432 22222111
Q ss_pred HHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--------------HHHHHhcccCCCCCCcEE
Q 000943 262 SLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--------------QLESLAGEREWFGPGSRI 327 (1214)
Q Consensus 262 ~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~l~~l~~~~~~~~~gs~I 327 (1214)
+.....+. ......+.++..-...+++|++|+++..- .+..+...+.....+--|
T Consensus 295 -----l~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 -----LFGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----hcccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11110100 00011112222223578999999997421 011222222212334456
Q ss_pred EEEeCCcchhh-h----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 328 IITSRDEHLLT-T----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 328 IiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
|.||.+...+. . ...+..+.++..+.++-.++|..+..+....... ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 66776543222 1 2345788999999999999998887443211100 112345666666654
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.72 E-value=0.013 Score=61.29 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=72.6
Q ss_pred ccccCcccchhhHHHHHHHHh--hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 188 DIFKDLVGIDSRWKKLRFLID--KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..-..++|.|...+.+.+--. .......-|.+||..|.|||.|++++.+.+.++...-+=+. .
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~------k--------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD------K--------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc------H---------
Confidence 344678999988887765332 12234566889999999999999999998887765422211 0
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCC---HHHHHHHhcccC---CCCCCcEEEEEeCC-cchhh
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFD---LKQLESLAGERE---WFGPGSRIIITSRD-EHLLT 338 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~---~~~l~~l~~~~~---~~~~gs~IIiTTR~-~~v~~ 338 (1214)
.+..++...++.++. ..+|+.|..||..- .+..+.|...+. ...|...++..|.+ +++++
T Consensus 122 -----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 122 -----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred -----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 111122223333333 57899999999862 233444443332 22344455555544 34444
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.012 Score=75.60 Aligned_cols=174 Identities=15% Similarity=0.175 Sum_probs=93.7
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.+++.|.+..++++.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..+..+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i~~-- 250 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEIMS-- 250 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHHhc--
Confidence 35688999999998887642 112346788999999999999999998764432 2111111100
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCC-CCC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK-------------QLESLAGEREWF-GPG 324 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~-~~g 324 (1214)
...+ .........+.......+.+|+||+++... ....+...+... ..+
T Consensus 251 -----------~~~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 251 -----------KYYG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -----------cccc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 0000 000111222233334567899999986421 122233222211 233
Q ss_pred cEEEE-EeCCcc-hhhhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 325 SRIII-TSRDEH-LLTTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 325 s~IIi-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
..++| ||.... +-..+ ..+..+.+...+.++..+++..+.-..... + ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCC
Confidence 34444 554432 11111 224578888889999888888654222111 1 112455777777754
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.033 Score=60.71 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=28.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+.++|.+|.|||+||.++++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998766544455543
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.053 Score=61.68 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=94.4
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGI 279 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~ 279 (1214)
.+.+...+..+ .-.....+.|+.|+||+++|+++++.+--.-+.. ...-+.-..-+.+.. ...++.
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~----g~HPD~ 76 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLFQA----GNHPDF 76 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhc----CCCCCE
Confidence 34555555432 2346778999999999999999998653211000 000000000000000 000000
Q ss_pred c------cccchHHHHH---HHh-----CCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCCc-chhhhcC-
Q 000943 280 W------DVYDGLKMIG---TRL-----RYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRDE-HLLTTYG- 341 (1214)
Q Consensus 280 ~------~~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~- 341 (1214)
. ...-.++.++ +.+ .+++=++|+|+++... ....|+..+..-.++..+|++|.+. .+++...
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 0 0001122222 222 2456678899999653 4555655555446777777777664 4443322
Q ss_pred ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 342 VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
-...+.+.+++.+++.+.+..... .. ...+..++..++|.|+..
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~---~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSS---AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhc---cC----hHHHHHHHHHcCCCHHHH
Confidence 246899999999999999877641 11 123556788999999643
No 203
>PRK06526 transposase; Provisional
Probab=96.65 E-value=0.0045 Score=68.14 Aligned_cols=28 Identities=25% Similarity=0.119 Sum_probs=23.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+.++|++|+|||+||.++.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999998866543
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.65 E-value=0.058 Score=69.98 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=39.7
Q ss_pred ccCcccchhhHHHHHHHHhhhc------C-CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKEL------N-GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~------~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++|.+..++.+...+.... + ...++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4568999999999888876321 1 1247889999999999999999986643
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.041 Score=63.16 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=94.9
Q ss_pred hHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--cCc-cEEEE-eehhh--hccCCHHHHHHHHHHhhh
Q 000943 199 RWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--FEG-SSFLA-NVREI--SEKGGLISLQKQLLSQLL 272 (1214)
Q Consensus 199 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~-~~~~~-~~~~~--~~~~~~~~l~~~ll~~ll 272 (1214)
..+++...+..+ .-.....+.|+.|+||+++|.+++..+--. -+. .|=.+ ..+.+ ...+++..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 345555555432 345678899999999999999998865221 000 00000 00000 000000000 0
Q ss_pred cCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-Ccc
Q 000943 273 KLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVD 343 (1214)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~ 343 (1214)
.......-.+++ +..+.+.+ .+++=++|+|+++.. .....|+..+..-.+++.+|++|.+. .+++.. .-.
T Consensus 81 p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000000001111 11122222 256678999999854 34555555555446777777777664 344442 223
Q ss_pred ceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 344 EVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
..+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~---~~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV---TMS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc---CCC----HHHHHHHHHHcCCCHHHHH
Confidence 578999999999998886542 111 2336678999999996443
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.60 E-value=0.023 Score=73.37 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=40.1
Q ss_pred ccCcccchhhHHHHHHHHhhh-------cCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE-------LNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++|.+..++.+.+.+... .....++.++|+.|+|||.+|+++++.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 467899999999988887521 122457889999999999999999887643
No 207
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.0078 Score=65.48 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=36.5
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|.++|..+-..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455556544455689999999999999999999886655556677775
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.53 E-value=0.0077 Score=70.33 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=42.2
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc--ccCccEEEE
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH--EFEGSSFLA 249 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~ 249 (1214)
..++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 34578888888888888763 356888999999999999999987743 344444444
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.49 E-value=0.05 Score=60.53 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+-|.+.|++|+|||++|+++++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4567999999999999999987553
No 210
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.47 E-value=0.0039 Score=63.56 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=43.7
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCC-CCCccEEeccCccCCCccC--ccccCCCCCcEEe
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTG-LPNLEELDLRGCTRLRDIH--PSLLLHKNLVSVN 681 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~-l~~L~~L~L~~c~~l~~lp--~si~~l~~L~~L~ 681 (1214)
.+...++|+.|.+..++ .+..+++|.+|.|++|++...-|.+.. +++|..|.|.+| ++.++. ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 44555666666655543 355667777777777766666666544 556777777763 333332 1233445555555
Q ss_pred cCC
Q 000943 682 LKD 684 (1214)
Q Consensus 682 L~~ 684 (1214)
+-+
T Consensus 120 ll~ 122 (233)
T KOG1644|consen 120 LLG 122 (233)
T ss_pred ecC
Confidence 544
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.0066 Score=69.28 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=28.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999998766544555654
No 212
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.46 E-value=0.00033 Score=85.78 Aligned_cols=35 Identities=26% Similarity=0.615 Sum_probs=17.7
Q ss_pred CCEEeecCCcCCCccc--CC---ccccceeeecCcccccc
Q 000943 900 LWIIDLEECKRLQSLS--QL---PSNIEEVRLNGCASLGT 934 (1214)
Q Consensus 900 L~~L~L~~C~~L~~lp--~l---p~sL~~L~l~~C~~L~~ 934 (1214)
|+.|+++.|...+.-- .. -..+..+++.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 6667777665443321 11 23455566666655443
No 213
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.0062 Score=67.64 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 249 (1214)
....+.++|..|+|||.||.++++.+..+ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 34678999999999999999999987665 34455655
No 214
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.42 E-value=0.071 Score=67.64 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=39.4
Q ss_pred ccCcccchhhHHHHHHHHhhh-------cCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE-------LNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...++|-++.++.|...+... ......+.++|++|+|||++|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999998887632 11245788999999999999999988763
No 215
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.059 Score=64.38 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=104.0
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc----cCc--cEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE----FEG--SSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~--~~~~~~~~~~~~~~~~~~l 263 (1214)
.+++||-+.-...|...+..+. -..--...|+.|+||||+|+-++..+--. .+. .|..+ .+.... ...++
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~Dv 90 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLIDV 90 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccccc
Confidence 4677999999999998887542 23445689999999999999998754211 110 01110 011000 00000
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHh--------CCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRL--------RYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L--------~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
+..+.. -..+++.+++.. .++.=+.|+|.|+- ...+.+|+..+..-.+.-..|+.|.+
T Consensus 91 --------iEiDaA----Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 91 --------IEIDAA----SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred --------hhhhhh----hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 000000 011233333322 24556889999984 45588888776655566666777776
Q ss_pred cchhhh--cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC
Q 000943 334 EHLLTT--YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 334 ~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 388 (1214)
.+-.+. ......|.++.++.++....+...+-...-. ..++...-|++..+|.
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGS 213 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCC
Confidence 433222 2334689999999999998888776433322 2234445566666553
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.36 E-value=0.055 Score=70.23 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=38.9
Q ss_pred ccCcccchhhHHHHHHHHhhh------cC-CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE------LN-GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...++|-+..++.+...+... .+ ....+.++|+.|+|||+||+.+++.+-
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 467899999999998877622 11 234567899999999999999998764
No 217
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.36 E-value=0.0016 Score=81.41 Aligned_cols=150 Identities=25% Similarity=0.241 Sum_probs=94.3
Q ss_pred CCCCcEEecCCCCCCCc-CCcccC-CCCCCCEEEecCCCCCCc------cCCCCccccccCCccccCCcccccccCCCcE
Q 000943 744 LNGLILLNLEKCTHLVG-LPSTIN-DLTSLITLNLSGCSKSKN------VGVESLEGLGSSRTVLRNPESSIFSMQNFEA 815 (1214)
Q Consensus 744 l~~L~~L~L~~c~~l~~-lp~~l~-~L~sL~~L~ls~c~~l~~------~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~ 815 (1214)
-.+|++|++++...... .|..++ .||+|++|.++|-..... .++++|..||+++++++.+ ..++.++||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46899999988554422 233333 489999999988554332 1378899999999988887 67788888888
Q ss_pred EeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCC-cc----cccCCCCCCcEEeCCCCCCe--
Q 000943 816 LSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGA-IP----SDIGNLCSLKELCLSKNKFI-- 888 (1214)
Q Consensus 816 L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~-lp----~~l~~l~sL~~L~L~~n~l~-- 888 (1214)
|.+.+-.+... ..+-.+.+|.+|+.||+|........ +. +.-..||.|+.||.|++.+.
T Consensus 200 L~mrnLe~e~~--------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESY--------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCch--------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 88776544321 12223566788888888877654322 11 11234777888888877655
Q ss_pred ecCcccCCCCCCCEEeecCC
Q 000943 889 LLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 889 ~lp~~i~~l~~L~~L~L~~C 908 (1214)
.+-..+..-++|+.+.+-+|
T Consensus 266 ~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 266 ILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred HHHHHHHhCccHhhhhhhhh
Confidence 22233334455555444433
No 218
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.017 Score=69.02 Aligned_cols=172 Identities=14% Similarity=0.158 Sum_probs=93.6
Q ss_pred CcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCH
Q 000943 192 DLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGL 260 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 260 (1214)
++=|.|+-..+|.+... .+-...+-|..+|++|.|||++|+++++.-...|-.+ .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------k-------- 500 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------K-------- 500 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------c--------
Confidence 34446666666664433 2224568899999999999999999999766555221 0
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCCCCCcEE
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK-------------QLESLAGEREWFGPGSRI 327 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~gs~I 327 (1214)
..++++...+.. .....+..++.-+-.+.+|.||.++... -+..|+..++-......|
T Consensus 501 ---gpEL~sk~vGeS------Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 501 ---GPELFSKYVGES------ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred ---CHHHHHHhcCch------HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 012222222111 1111112222223456888888876432 144555555433333333
Q ss_pred E--EEe-CCcchhhhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 328 I--ITS-RDEHLLTTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 328 I--iTT-R~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
+ -.| |...+-..+ ..++.+-++.-+.+...++|+.++-+..-+.. . ...++++++.|.-
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~--v-dl~~La~~T~g~S 637 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED--V-DLEELAQATEGYS 637 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc--c-cHHHHHHHhccCC
Confidence 3 333 333332222 35678888888899999999999854443322 1 1234555555543
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.031 Score=65.92 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=89.0
Q ss_pred ccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..++=|.+..+.++.+++.. +-...|=|.++|++|.|||.||++++....-.| +. ++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 46778999999999887762 113357789999999999999999988664332 22 111
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCC-----
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK-------------QLESLAGEREWF----- 321 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~----- 321 (1214)
-++.+.+.++ +.....+...+.-...++++++|+++-.. -+.+|+..++..
T Consensus 257 -----peivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 257 -----PEIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred -----hhhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 1122222211 11122233334445689999999998321 133444333221
Q ss_pred -CCCcEEEE-EeCCcchhhhc----CccceeecCCCCHHHHHHHHHHhhhc
Q 000943 322 -GPGSRIII-TSRDEHLLTTY----GVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 322 -~~gs~IIi-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
+.+--||- |+|-..+-..+ ..++.+.+.--++.+-.+++...+-+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 23333333 44554444333 23467788777777777777666543
No 220
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.1 Score=64.55 Aligned_cols=177 Identities=17% Similarity=0.241 Sum_probs=106.3
Q ss_pred cccCcccchhhHHHHHHHHh---h-------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLID---K-------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..+++.|.++..++|.+... . +..-++=|.++|++|.|||-||++++-... +-|+. ++.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSG-- 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSG-- 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ech--
Confidence 35778998887777666554 1 112356789999999999999999976432 22333 111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHH-HHHHHhCCCcEEEEEeCCCCH-----------------HHHHHHhcccCC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLK-MIGTRLRYRRVLLIIDDAFDL-----------------KQLESLAGEREW 320 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~-----------------~~l~~l~~~~~~ 320 (1214)
.++..-..+.. ...+. .....-.+.++.|.+|+++.. ..+.+|+...+-
T Consensus 378 ------SEFvE~~~g~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 378 ------SEFVEMFVGVG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ------HHHHHHhcccc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 11111111110 01111 122222457888999987632 126677776665
Q ss_pred CCCCcE--EEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 321 FGPGSR--IIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 321 ~~~gs~--IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
+..+.. ++-+|....++.. -..++.+.++.-+.....++|.-|+...... .+..++++ ++.++-|.+=|
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 554443 3345554444333 2456788999999999999999998554443 34455666 88888888865
No 221
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.32 E-value=0.0078 Score=62.54 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=26.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999987655444455654
No 222
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.32 E-value=0.096 Score=67.58 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=40.0
Q ss_pred cCcccchhhHHHHHHHHhh----hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 191 KDLVGIDSRWKKLRFLIDK----ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
...+|.+.-.+.+.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588988888888876652 122345789999999999999999999775443
No 223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.31 E-value=0.061 Score=56.94 Aligned_cols=172 Identities=18% Similarity=0.245 Sum_probs=97.7
Q ss_pred ccCcccchhhHHH---HHHHHhh----hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH
Q 000943 190 FKDLVGIDSRWKK---LRFLIDK----ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 190 ~~~~vGr~~~l~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
.++.||.++...+ |.+.|.. +.-.++.|..+|++|.|||.+|+++++...--| +. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk---------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK---------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec----------
Confidence 3678998877654 3444442 223578999999999999999999988654322 22 10
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHH-HHhCCCcEEEEEeCCCCH--------------HHHHHHhcccCCC--CCCc
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIG-TRLRYRRVLLIIDDAFDL--------------KQLESLAGEREWF--GPGS 325 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~--------------~~l~~l~~~~~~~--~~gs 325 (1214)
..+++..-.+ +-...+..+- +.-+..++++.+|.++-. +.+.+|+..++.. +.|-
T Consensus 184 -at~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 184 -ATELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred -hHHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 1122222111 1111122222 222357899999988732 2255566555422 3455
Q ss_pred EEEEEeCCcchhhhc---CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC
Q 000943 326 RIIITSRDEHLLTTY---GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 326 ~IIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 388 (1214)
..|-.|....++... .....++..--+++|..+++..++-.-.-+.+. -.+.++.+++|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 556666555444331 223567777789999999998887443333211 134456666654
No 224
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.31 E-value=0.079 Score=62.80 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877654
No 225
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.21 Score=57.23 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC-cchhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCC
Q 000943 295 YRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD-EHLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQP 370 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 370 (1214)
+++=++|+|+++.. .....|+..+..-.+++.+|++|.+ ..+++.. .-...+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 45558889999854 4456666555555677766666655 4444443 223689999999999999987652 11
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHH
Q 000943 371 WKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 371 ~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
+ ...++..++|.|+....+
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755444
No 226
>PRK04296 thymidine kinase; Provisional
Probab=96.30 E-value=0.0094 Score=62.81 Aligned_cols=111 Identities=18% Similarity=0.080 Sum_probs=61.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC--CcccccchHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS--GIWDVYDGLKMIGTR 292 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~--~~~~~~~~~~~l~~~ 292 (1214)
.++.|+|..|.||||+|..++.+...+...+.++. - ......+.. .+...+ +..-. ......+....+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~l-g~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRI-GLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCC-CCcccceEeCChHHHHHHHHh-
Confidence 47789999999999999999888765544444332 0 001111111 122221 11100 01122233333333
Q ss_pred hCCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 293 LRYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
..++.-+||+|.++- .+++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 234556899999975 344555544322 46889999999854
No 227
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.30 E-value=0.00031 Score=66.71 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=50.9
Q ss_pred CCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEE
Q 000943 673 LHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILL 750 (1214)
Q Consensus 673 ~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 750 (1214)
....|...+|++ +.++.+|..+ .++.++.|+|++ +.+..+|+.+..|+.|+.|+++.|.+...|.-+..|.+|..|
T Consensus 51 ~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 344555556666 4566666655 455666666666 345666666777777777777777777666666666666666
Q ss_pred ecCCC
Q 000943 751 NLEKC 755 (1214)
Q Consensus 751 ~L~~c 755 (1214)
+..++
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 65554
No 228
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.25 E-value=0.044 Score=60.33 Aligned_cols=174 Identities=20% Similarity=0.195 Sum_probs=95.5
Q ss_pred cccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhc--cCCHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISE--KGGLISLQ 264 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~--~~~~~~l~ 264 (1214)
+...++|-..+..++..++... -++..-|.|+|+.|.|||+|......+ ...+...+.+..+.+.-. .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457899999999999888731 134456789999999999998766655 334544445443322211 12234444
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHhCC------CcEEEEEeCCCCH----HH--HHHHhc-ccCCCCCCcEEEEEe
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRLRY------RRVLLIIDDAFDL----KQ--LESLAG-EREWFGPGSRIIITS 331 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVLDdv~~~----~~--l~~l~~-~~~~~~~gs~IIiTT 331 (1214)
.++..++-. ......+..+....+...|.. .++.+|+|.++-- .| +-.+.. ......|-+-|-+||
T Consensus 101 rql~~e~~~-~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNR-IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhh-hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 444444221 122223334445555555542 4689999988732 22 222221 111235677888999
Q ss_pred CCcc-------hhhhcCccceeecCCCCHHHHHHHHHHhh
Q 000943 332 RDEH-------LLTTYGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 332 R~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
|-.. |-.......++-++.++-++-..+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9742 21222222345556666666666655543
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.051 Score=65.19 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=84.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehh-hhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVRE-ISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..-|.|.|..|+|||+||+++++.+... ..+++..+.. ......+..+++.+ ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH------------------HHHHHHH
Confidence 3568899999999999999999988743 3333332211 11112222322221 2234455
Q ss_pred hCCCcEEEEEeCCCCHH--------H-------HHHHhcc-cC-CCCCCcE--EEEEeCCcchhhh-----cCccceeec
Q 000943 293 LRYRRVLLIIDDAFDLK--------Q-------LESLAGE-RE-WFGPGSR--IIITSRDEHLLTT-----YGVDEVLKL 348 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~--------~-------l~~l~~~-~~-~~~~gs~--IIiTTR~~~v~~~-----~~~~~~~~l 348 (1214)
+...+-+|||||++-.- | +..+... .. ....+.+ +|.|....+.+.. .-......+
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 67789999999997321 1 1111110 00 1123333 4444444322222 122357788
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHH
Q 000943 349 KELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVL 395 (1214)
Q Consensus 349 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~l 395 (1214)
+.+...+-.++++...-+.. . ....+...-+..+|+|. |.-++++
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~-~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNL-S-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CCcchhHHHHHHHHHHHhhh-h-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 99998888887766543222 1 11122233377777764 4444433
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.21 E-value=0.012 Score=59.92 Aligned_cols=34 Identities=32% Similarity=0.271 Sum_probs=26.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999887765444555554
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.024 Score=61.81 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=48.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH----hcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI----AHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI 289 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l 289 (1214)
-|+|.++|++|.|||+|.+++++++ .++|.....+. +.. ..++++.+.+... .+....+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----ins--------hsLFSKWFsESgK---lV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----INS--------HSLFSKWFSESGK---LVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Eeh--------hHHHHHHHhhhhh---HHHHHHHHH
Confidence 4889999999999999999999955 45566655554 111 1233333332221 222334555
Q ss_pred HHHhCCCc--EEEEEeCCCCH
Q 000943 290 GTRLRYRR--VLLIIDDAFDL 308 (1214)
Q Consensus 290 ~~~L~~kr--~LlVLDdv~~~ 308 (1214)
.+.+..+. +.+.+|.|+..
T Consensus 242 ~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHH
Confidence 56665544 55667988754
No 232
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.20 E-value=0.0062 Score=64.07 Aligned_cols=123 Identities=24% Similarity=0.254 Sum_probs=58.4
Q ss_pred chhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH-HH-hcccCccEEEEeehhhhccCC-----HH-------
Q 000943 196 IDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD-LI-AHEFEGSSFLANVREISEKGG-----LI------- 261 (1214)
Q Consensus 196 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~-~~-~~~F~~~~~~~~~~~~~~~~~-----~~------- 261 (1214)
+..+-....+.|. ...+|.+.|++|.|||.||.+.+- .+ ..+|+..++....-+..+.-+ +.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444444444 346899999999999999988774 33 456776666654432211111 00
Q ss_pred HHHHHHHHhhhcCCCCCcccccchHHHHH----------HHhCC---CcEEEEEeCCCCH--HHHHHHhcccCCCCCCcE
Q 000943 262 SLQKQLLSQLLKLPDSGIWDVYDGLKMIG----------TRLRY---RRVLLIIDDAFDL--KQLESLAGEREWFGPGSR 326 (1214)
Q Consensus 262 ~l~~~ll~~ll~~~~~~~~~~~~~~~~l~----------~~L~~---kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~ 326 (1214)
.-..+.+..++.. ...+.+. ..+++ ...+||+|++++. .++..+.... +.||+
T Consensus 81 ~p~~d~l~~~~~~---------~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~sk 148 (205)
T PF02562_consen 81 RPIYDALEELFGK---------EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSK 148 (205)
T ss_dssp HHHHHHHTTTS-T---------TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-E
T ss_pred HHHHHHHHHHhCh---------HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcE
Confidence 1111111111100 0111111 12233 3579999999864 5788877654 79999
Q ss_pred EEEEeCCc
Q 000943 327 IIITSRDE 334 (1214)
Q Consensus 327 IIiTTR~~ 334 (1214)
||++--..
T Consensus 149 ii~~GD~~ 156 (205)
T PF02562_consen 149 IIITGDPS 156 (205)
T ss_dssp EEEEE---
T ss_pred EEEecCce
Confidence 99987654
No 233
>PRK04132 replication factor C small subunit; Provisional
Probab=96.20 E-value=0.17 Score=64.50 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=88.0
Q ss_pred cCCchHHHHHHHHHHHHh-cccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEE
Q 000943 222 MGGIGKTTLARVVYDLIA-HEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLL 300 (1214)
Q Consensus 222 ~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~Ll 300 (1214)
+.++||||+|.++++.+- +.+...+.-.+. +...++..+ ++++......... -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgid~I-R~iIk~~a~~~~~---------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA---SDERGINVI-REKVKEFARTKPI---------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccHHHH-HHHHHHHHhcCCc---------------CCCCCEEE
Confidence 789999999999998762 223322222222 222333332 2333321111000 01245799
Q ss_pred EEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHH
Q 000943 301 IIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQ 376 (1214)
Q Consensus 301 VLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 376 (1214)
|+|+++.. +....|...........++|++|.+. .+.... .....+++.+++.++..+.+.+.+...... -..+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e 712 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEE 712 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 99999965 35566665555445677777777664 333232 224689999999999998887765432221 1145
Q ss_pred HHHHHHHHhCCChHH
Q 000943 377 LSKYVVKYSGGLPLA 391 (1214)
Q Consensus 377 ~~~~i~~~~~GlPLA 391 (1214)
....|++.++|.+-.
T Consensus 713 ~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 713 GLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHcCCCHHH
Confidence 677899999998844
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.17 E-value=0.011 Score=63.92 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566544455689999999999999999999887655544566664
No 235
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.17 E-value=0.12 Score=66.11 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=41.6
Q ss_pred ccCcccchhhHHHHHHHHhhh----cCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE----LNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..+.+|.+.-.++|.+++... .....++.++|++|+||||+|+.++..+...|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356899999999998887731 12456899999999999999999998665443
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.1 Score=60.70 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=74.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHH--
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-- 289 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-- 289 (1214)
.....|.+.|++|+|||+||..++. ...|+.+-.+. . ..--++. ..+....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---p-e~miG~s--------------------EsaKc~~i~k 589 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---P-EDMIGLS--------------------ESAKCAHIKK 589 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---h-HHccCcc--------------------HHHHHHHHHH
Confidence 3467788999999999999998865 45677543332 0 0001111 11122222
Q ss_pred --HHHhCCCcEEEEEeCCCCHHHH------------HHHh---cccCCCCCCcEEEEEeCCcchhhhcCc----cceeec
Q 000943 290 --GTRLRYRRVLLIIDDAFDLKQL------------ESLA---GEREWFGPGSRIIITSRDEHLLTTYGV----DEVLKL 348 (1214)
Q Consensus 290 --~~~L~~kr~LlVLDdv~~~~~l------------~~l~---~~~~~~~~gs~IIiTTR~~~v~~~~~~----~~~~~l 348 (1214)
.+.-+..=-.||+||++..-+| +.|. ...+-.+..--|+-||....++..|+. ...|.|
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 2333455678999999865442 2322 222212223345557777888888764 357899
Q ss_pred CCCCH-HHHHHHHHHh
Q 000943 349 KELHD-DEALQLFCKK 363 (1214)
Q Consensus 349 ~~L~~-~ea~~Lf~~~ 363 (1214)
+.++. ++..+.++..
T Consensus 670 pnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEEL 685 (744)
T ss_pred CccCchHHHHHHHHHc
Confidence 99887 6677766554
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.16 E-value=0.17 Score=61.26 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=119.3
Q ss_pred ccccCcccchhhHHHHHHHHhh--hc-CCcEEEEEEecCCchHHHHHHHHHHHHh-----cccCccEEEEeehhhhccCC
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDK--EL-NGVRMIGICGMGGIGKTTLARVVYDLIA-----HEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++..+-+||.+..+|...+.. .. .....+-|.|.+|.|||+.+..|.+.++ +.-+.-.|+. +. ...-.+
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~ 470 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLAS 470 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecC
Confidence 3567788999999999988872 22 3345788999999999999999998553 2222222322 00 122345
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC-----CCcEEEEEeCCCCHHH--HHHHhcccCCC-CCCcEEEEEe
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR-----YRRVLLIIDDAFDLKQ--LESLAGEREWF-GPGSRIIITS 331 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--l~~l~~~~~~~-~~gs~IIiTT 331 (1214)
..++...|...+-+... ......+.+..+.. .++.++++|+++..-. -+-+-..++|. .++|+++|-+
T Consensus 471 ~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 67777777777544322 23344555655554 3678999999875422 22222233443 4678776654
Q ss_pred CCc-----------chhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCChHHHHHHHhh
Q 000943 332 RDE-----------HLLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLPLALSVLGSF 398 (1214)
Q Consensus 332 R~~-----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLAl~~lg~~ 398 (1214)
=.. .+...++ ...+...+-+.++-.+....+..+...- ....+-++++|+...|..-.|+.+.-++
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 221 1111111 2456778888888888877665333211 2233444556666666666666555443
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.12 E-value=0.091 Score=53.78 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc--------------------cCccEEEEeehhh
Q 000943 195 GIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE--------------------FEGSSFLANVREI 254 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------F~~~~~~~~~~~~ 254 (1214)
|-+...+.|...+..+ .-...+.++|+.|+||+++|.++++.+-.. .+...++. ..+.
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK-PDKK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE-TTTS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe-cccc
Confidence 4455566676666533 234567899999999999999998865221 11222221 0000
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEE
Q 000943 255 SEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRI 327 (1214)
Q Consensus 255 ~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~I 327 (1214)
.....+.+ +..+.+.+ .+++=++|+||++.. +...+|+..+.....++++
T Consensus 79 ~~~i~i~~-----------------------ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 79 KKSIKIDQ-----------------------IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp SSSBSHHH-----------------------HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cchhhHHH-----------------------HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 00011111 11222222 235668999999954 4456666555555688999
Q ss_pred EEEeCCcc-hhhhc-CccceeecCCC
Q 000943 328 IITSRDEH-LLTTY-GVDEVLKLKEL 351 (1214)
Q Consensus 328 IiTTR~~~-v~~~~-~~~~~~~l~~L 351 (1214)
|++|++.. +++.. .-...+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 99998864 33322 22245555554
No 239
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.11 E-value=0.022 Score=65.11 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCcc-EEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCccc
Q 000943 203 LRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGS-SFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWD 281 (1214)
Q Consensus 203 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~ 281 (1214)
+.+.+..-.. .+.++|+|.+|.|||||++.+++.+....+.+ +++.-+. .....+.++.+.+...+.....+....
T Consensus 123 vID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 123 VVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 4555543222 35668999999999999999999876654333 3443332 234566777777766543222111111
Q ss_pred c----cchHHHHHHHh--CCCcEEEEEeCCCCHH
Q 000943 282 V----YDGLKMIGTRL--RYRRVLLIIDDAFDLK 309 (1214)
Q Consensus 282 ~----~~~~~~l~~~L--~~kr~LlVLDdv~~~~ 309 (1214)
. ......+.+++ .+++++||+|++....
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1 10111122222 4799999999987543
No 240
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.10 E-value=0.014 Score=64.12 Aligned_cols=94 Identities=23% Similarity=0.186 Sum_probs=56.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhh-c------CCCCCccccc---
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLL-K------LPDSGIWDVY--- 283 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll-~------~~~~~~~~~~--- 283 (1214)
-+.++|.|.+|.||||||+.+++.++.+|+..+++.-+.+- ...+.++.+++...-. . ..........
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 36789999999999999999999998888877777655432 2334444454443210 0 0000100000
Q ss_pred -chHHHHHHHh---CCCcEEEEEeCCCCHH
Q 000943 284 -DGLKMIGTRL---RYRRVLLIIDDAFDLK 309 (1214)
Q Consensus 284 -~~~~~l~~~L---~~kr~LlVLDdv~~~~ 309 (1214)
...-.+.+++ +++.+|+|+||+....
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 0011233444 3899999999987543
No 241
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.019 Score=68.87 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=44.3
Q ss_pred ccCcccchhhHHHHHHHHhh----hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
.++.+|+++-.+++.+++.- ++...++++.+|++|+|||.+|+.++..+...|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 35588999999999988872 344578999999999999999999999886665
No 242
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.09 E-value=0.0085 Score=64.54 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=28.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.++|.|..|.||||+++.+.......|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999988888996555543
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.09 E-value=0.18 Score=58.24 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhhhc-CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 197 DSRWKKLRFLIDKEL-NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 197 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
+.-.+.|.+.+.... ....+|+|.|.-|.|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776443 678999999999999999999999888776
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.24 Score=56.67 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=49.2
Q ss_pred CcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcc-hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCc
Q 000943 296 RRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEH-LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPW 371 (1214)
Q Consensus 296 kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (1214)
++-++|+|+++.. .....+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~- 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA- 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC-
Confidence 3444566888754 333334333332235676777777754 33332 223688999999999998886542 11
Q ss_pred hHHHHHHHHHHHHhCCChHH
Q 000943 372 KEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 372 ~~~~~~~~~i~~~~~GlPLA 391 (1214)
.. . ..+..++|-|+.
T Consensus 188 ~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLF 202 (325)
T ss_pred cH-H----HHHHHhCCChhh
Confidence 11 1 123567898864
No 245
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.049 Score=62.83 Aligned_cols=144 Identities=23% Similarity=0.172 Sum_probs=79.2
Q ss_pred CcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC---------------------ccEEEEe
Q 000943 192 DLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE---------------------GSSFLAN 250 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~ 250 (1214)
.++|-+....++..+..........+.++|++|+||||+|.++++.+..... ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 3566677777777776644334456899999999999999999987753321 111111
Q ss_pred ehhhhccCC---HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCc
Q 000943 251 VREISEKGG---LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGS 325 (1214)
Q Consensus 251 ~~~~~~~~~---~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs 325 (1214)
.+.... ..+..+++........ ..++.-++|+|+++... ...++...........
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 011111 1222222222210000 02567889999999653 3445555444456788
Q ss_pred EEEEEeCCc-chhhhc-CccceeecCCCCHHHH
Q 000943 326 RIIITSRDE-HLLTTY-GVDEVLKLKELHDDEA 356 (1214)
Q Consensus 326 ~IIiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea 356 (1214)
++|++|... .+.... .....+++.+.+..+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 888888743 333322 1234666666443333
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.05 E-value=0.0074 Score=68.59 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=41.3
Q ss_pred CcccchhhHHHHHHHHhhh----cCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 192 DLVGIDSRWKKLRFLIDKE----LNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.++|.++.++++.+.+... ....++++++|++|.||||||+++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988742 234688999999999999999999986643
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.05 E-value=0.015 Score=62.43 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 206 LIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 206 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+|..+-...+++.|+|++|.|||++|.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333345689999999999999999998876655556777876
No 248
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.05 E-value=0.065 Score=67.40 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=84.7
Q ss_pred cCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCH
Q 000943 191 KDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGL 260 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 260 (1214)
.++.|.+...+++.+.+... ..-.+-|.++|++|.|||++|+.++......| +......
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~------- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSD------- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHH-------
Confidence 45667776666665554311 01134589999999999999999988664433 2111111
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCCC--
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWFG-- 322 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~-- 322 (1214)
+.... .+. ........+.......+.+|++|+++... .+..+....+.+.
T Consensus 221 --~~~~~----~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 221 --FVEMF----VGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred --hHHhh----hcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 00000 000 00111122223334578999999987541 1233333333222
Q ss_pred CCcEEEEEeCCcchhhhc-----CccceeecCCCCHHHHHHHHHHhhhc
Q 000943 323 PGSRIIITSRDEHLLTTY-----GVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 323 ~gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
.+.-||.||.....+... ..++.+.++..+.++..+++..+..+
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 344555577665443321 24578889999999999998887644
No 249
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.16 Score=53.42 Aligned_cols=146 Identities=18% Similarity=0.340 Sum_probs=85.8
Q ss_pred Cccc-chhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 192 DLVG-IDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 192 ~~vG-r~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.+|| .+.+++++.+.+.. +-..++-|.++|++|.|||-||++|++. ..+.|+. ++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsg------ 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSG------ 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ech------
Confidence 3454 56667777665541 1234567889999999999999999872 2333333 322
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHH----hCCCcEEEEEeCCCCHH--------------H--HHHHhcccC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR----LRYRRVLLIIDDAFDLK--------------Q--LESLAGERE 319 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~ 319 (1214)
.++.+..+.. +..++++. -.+.+-.|..|.+++.. | .-.++..++
T Consensus 215 -selvqk~ige--------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 215 -SELVQKYIGE--------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred -HHHHHHHhhh--------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 2333333222 12222222 13567888889887431 1 223344444
Q ss_pred CC--CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhh
Q 000943 320 WF--GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 320 ~~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
-| .+.-+||.+|..-.++.. -..++.++.++-+++...+++.-+.
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 22 356788887765444332 2456788999999888888887665
No 250
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0077 Score=72.48 Aligned_cols=159 Identities=16% Similarity=0.260 Sum_probs=90.0
Q ss_pred ccCcccchhhHHHHHHHHhhh----cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE----LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..+.+|.++-.++|.+.|.-. .-...+++++|++|+|||.|++.+++.+...|-.. .+..+.....+..-.+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~----sLGGvrDEAEIRGHRR 397 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI----SLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE----ecCccccHHHhccccc
Confidence 456889999999999988732 23457999999999999999999999887776321 1222211111111111
Q ss_pred HHHHhhhcCCCCCccccc-chHHHHHHHhCCCcEEEEEeCCCCHH----------HHHHHhcccC-CCC--------CCc
Q 000943 266 QLLSQLLKLPDSGIWDVY-DGLKMIGTRLRYRRVLLIIDDAFDLK----------QLESLAGERE-WFG--------PGS 325 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~-~~~~~l~~~L~~kr~LlVLDdv~~~~----------~l~~l~~~~~-~~~--------~gs 325 (1214)
.. +...+ ..++.++ ...-+.-+++||.++... -++-|-+... .|. .=|
T Consensus 398 TY-----------IGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 398 TY-----------IGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cc-----------cccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11 11111 1122222 234577789999998432 1333333221 010 124
Q ss_pred EE-EEEeCCc-c-h-hhhcCccceeecCCCCHHHHHHHHHHhh
Q 000943 326 RI-IITSRDE-H-L-LTTYGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 326 ~I-IiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
.| .|||-+. . + .+-+....++++.+-+++|=.+.-.++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 3455432 1 1 1112233689999999999887766664
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.033 Score=64.54 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=79.2
Q ss_pred cCcccchhhH---HHHHHHHhh-------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCH
Q 000943 191 KDLVGIDSRW---KKLRFLIDK-------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGL 260 (1214)
Q Consensus 191 ~~~vGr~~~l---~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~ 260 (1214)
++.-|.|+.. +++.+.|.. +..=++-|.++|++|.|||-||++++-... .-+|.....+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEFd----- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEFD----- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccchh-----
Confidence 4566777654 555555542 112256789999999999999999876332 222333211111
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHH----HhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCCCC
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT----RLRYRRVLLIIDDAFDLK-------------QLESLAGEREWFGP 323 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~~~ 323 (1214)
+++ +..+..++++ .-..-+++|.+|.++... .+.+|+..++-|.+
T Consensus 375 -----Em~-------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 375 -----EMF-------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred -----hhh-------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 000 1112222222 224578999999987431 25667666665554
Q ss_pred C--cEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhh
Q 000943 324 G--SRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 324 g--s~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
. --||-.|-.+..+.. + ..+..+.|+.-+..--.++|..+.
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3 333334443333222 1 234566666666555556666554
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.96 E-value=0.0062 Score=58.93 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 253
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.96 E-value=0.01 Score=59.12 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|.++|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999977
No 254
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.95 E-value=0.2 Score=53.87 Aligned_cols=226 Identities=17% Similarity=0.225 Sum_probs=122.4
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc------ccCccEEEEeehh------hhc--
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH------EFEGSSFLANVRE------ISE-- 256 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~~~-- 256 (1214)
+.+.++++.-..+.++.. ..+..-..++|+.|.||-|.+..+.+.+-. +-+...|...... ++.
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346677777777766654 345778889999999999998888765422 1222233321110 000
Q ss_pred ---------cCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcE-EEEEeCCCCH--HHHHHHhcccCCCCCC
Q 000943 257 ---------KGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRV-LLIIDDAFDL--KQLESLAGEREWFGPG 324 (1214)
Q Consensus 257 ---------~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~l~~l~~~~~~~~~g 324 (1214)
+..-.-+.++++.++......+. . ..+.+ ++|+-.++.. +.-.+|..........
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~------------~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------Q-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------c-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 01112333444444221111100 0 11233 5666666643 2333444444445677
Q ss_pred cEEEEEeCCcc-hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHHHhh-hC
Q 000943 325 SRIIITSRDEH-LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVLGSF-LC 400 (1214)
Q Consensus 325 s~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~lg~~-L~ 400 (1214)
+|+|+..-+.+ +.... ...-.+.++..+++|....++..+-+..-..+ .+++.+|+++++|+- -|+-++-.. +.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 88887665422 22222 12246889999999999999988755554333 678999999999874 232222111 11
Q ss_pred C---------CChHHHHHHHHHHhc-----CCCccHHHHHHHhHhCC
Q 000943 401 G---------KTTKEWESSIQRLKR-----DSEKDILDILQISFDGL 433 (1214)
Q Consensus 401 ~---------~~~~~w~~~l~~l~~-----~~~~~i~~~l~~sy~~L 433 (1214)
+ -..-+|+-.+.+..+ .....+..+-..-|+-|
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 145689988876543 23344444444444433
No 255
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.94 E-value=0.019 Score=59.70 Aligned_cols=37 Identities=30% Similarity=0.554 Sum_probs=31.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+|.+.|+.|.||||+|+.+++++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887777776664
No 256
>PRK08118 topology modulation protein; Reviewed
Probab=95.93 E-value=0.0057 Score=62.95 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.|+|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 257
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.88 E-value=0.0051 Score=65.50 Aligned_cols=87 Identities=25% Similarity=0.223 Sum_probs=58.7
Q ss_pred cCCCCCCCEEecCCC--CCCCCCcccccCCCCCCcEEeCCCCCCeecC--cccCCCCCCCEEeecCCcCCCc------cc
Q 000943 846 LLGLCSLTKLDLSDC--NLGEGAIPSDIGNLCSLKELCLSKNKFILLP--ESISCLSKLWIIDLEECKRLQS------LS 915 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~--~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~C~~L~~------lp 915 (1214)
+..+++|++|.++.| .+. +.++.....+++|++|+|++|.+..+. ..+..+.+|..|++.+|.-.+. +-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 555778999999999 442 345555566699999999999776322 2456777888888888874441 11
Q ss_pred CCccccceeeecCccccc
Q 000943 916 QLPSNIEEVRLNGCASLG 933 (1214)
Q Consensus 916 ~lp~sL~~L~l~~C~~L~ 933 (1214)
.+.++|++|+-.++..-+
T Consensus 140 ~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHhhhhccccccccCCcc
Confidence 344677777766655443
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.86 E-value=0.028 Score=59.68 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=63.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE-eehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA-NVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL 293 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L 293 (1214)
.+|.|.|+.|.||||++.++...+.......++.. +-.+.... .. ..+ ....... .+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~----i~q~~vg-~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSL----INQREVG-LDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----cce----eeecccC-CCccCHHHHHHHHh
Confidence 36899999999999999998887654444443332 11110000 00 000 0000000 11223456677778
Q ss_pred CCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchh
Q 000943 294 RYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLL 337 (1214)
Q Consensus 294 ~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 337 (1214)
+..+=.+++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 8788899999999887766544332 2455677777655443
No 259
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.84 E-value=0.017 Score=57.49 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=33.7
Q ss_pred ccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 194 VGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 194 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
||....++++.+.+..-.....-|.|+|..|.||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 67888888888887754455566889999999999999988774
No 260
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.84 E-value=0.031 Score=60.84 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=34.7
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 249 (1214)
.|..+|..+-....++.|+|.+|.|||+||..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44555544445568999999999999999999887654444 4556665
No 261
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.82 E-value=0.001 Score=81.38 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=20.1
Q ss_pred CcEEeCCCCCCeecCc--ccCC-CCCCCEEeecCCcCCC
Q 000943 877 LKELCLSKNKFILLPE--SISC-LSKLWIIDLEECKRLQ 912 (1214)
Q Consensus 877 L~~L~L~~n~l~~lp~--~i~~-l~~L~~L~L~~C~~L~ 912 (1214)
|+.|+++.|.....-. .... +..++.+++.+|+.+.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 6777777775442210 1111 6667777777776544
No 262
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.73 E-value=0.0024 Score=67.58 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=10.1
Q ss_pred cCCCCCCCEEEecCCCCCC
Q 000943 765 INDLTSLITLNLSGCSKSK 783 (1214)
Q Consensus 765 l~~L~sL~~L~ls~c~~l~ 783 (1214)
+-++|.|+..++|.|..-.
T Consensus 88 Llkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhcCCcceeeeccccccCc
Confidence 3445556666655555433
No 263
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.68 E-value=0.0014 Score=62.45 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=61.8
Q ss_pred CceEEEecCCCCCCCCCCC--CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCc
Q 000943 584 ELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGC 661 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c 661 (1214)
+|...++++|.++++|..| .+..+..|+|.+|.|..+|..+..++.|+.|+++.|.....+..+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4666788888888888887 45578888888888888888888888888888888876555555555666666666663
Q ss_pred cCCCccC
Q 000943 662 TRLRDIH 668 (1214)
Q Consensus 662 ~~l~~lp 668 (1214)
....+|
T Consensus 134 -a~~eid 139 (177)
T KOG4579|consen 134 -ARAEID 139 (177)
T ss_pred -ccccCc
Confidence 334444
No 264
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.66 E-value=0.018 Score=60.79 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
+++|.++|+.|+||||.+.+++.+++.+-..+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 47899999999999999988888776553333444
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.011 Score=58.11 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=30.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcc-cCc-cEEEEeehh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHE-FEG-SSFLANVRE 253 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~ 253 (1214)
--|+|.||+|+||||+++.+++.++.. |.. .++...+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 458999999999999999999988766 654 444444544
No 266
>PRK06696 uridine kinase; Validated
Probab=95.66 E-value=0.02 Score=62.13 Aligned_cols=46 Identities=26% Similarity=0.200 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHhh-hcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 196 IDSRWKKLRFLIDK-ELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 196 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45556666666543 34568899999999999999999999877543
No 267
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.66 E-value=0.019 Score=58.78 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=77.1
Q ss_pred ccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccc-cccCccEEecCCCcC--CCCCCCCCCCCCcc
Q 000943 578 LEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIK-PLSNLKIMRLCNAKN--LISTPDLTGLPNLE 654 (1214)
Q Consensus 578 ~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~-~L~~L~~L~Ls~~~~--l~~~p~~~~l~~L~ 654 (1214)
+....+....+++.+|.+..++..=.++.|..|.+.+|.|..+-..+. .+++|+.|.|.+|.. +..+..+..||.|+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 445556777889999988888766688999999999999998876654 466799999998863 23344577899999
Q ss_pred EEeccCccCCCccC---ccccCCCCCcEEecCC
Q 000943 655 ELDLRGCTRLRDIH---PSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 655 ~L~L~~c~~l~~lp---~si~~l~~L~~L~L~~ 684 (1214)
+|.+-+|..-..-. .-+..+++|++||..+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999865332211 1344566666666654
No 268
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.059 Score=61.19 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGI 279 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~ 279 (1214)
+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+. ...+..++.... .. ++....+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklRA-~R-L~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLRA-DR-LGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHHH-HH-hCCCccce
Confidence 4566666654333457899999999999999999999988766 566654 233333332221 11 22211111
Q ss_pred -ccccchHHHHHHHh-CCCcEEEEEeCCCC
Q 000943 280 -WDVYDGLKMIGTRL-RYRRVLLIIDDAFD 307 (1214)
Q Consensus 280 -~~~~~~~~~l~~~L-~~kr~LlVLDdv~~ 307 (1214)
--.+...+.|.+.+ ..++-++|+|-++.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 01112233444444 36889999998863
No 269
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.12 Score=61.31 Aligned_cols=129 Identities=17% Similarity=0.244 Sum_probs=78.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL 293 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L 293 (1214)
..=|.+||++|.|||-||++|++.-...| +. ++. . +++....++ +..+......+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VKG-------P----ELlNkYVGE------SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKG-------P----ELLNKYVGE------SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecC-------H----HHHHHHhhh------HHHHHHHHHHHhh
Confidence 45588999999999999999999776665 22 111 1 122221211 1111122233333
Q ss_pred CCCcEEEEEeCCCCH-------------HHHHHHhcccCCC--CCCcEEEEEeCCcchhhh-c----CccceeecCCCCH
Q 000943 294 RYRRVLLIIDDAFDL-------------KQLESLAGEREWF--GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHD 353 (1214)
Q Consensus 294 ~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~ 353 (1214)
...+++|.+|.++.. .-+..|+..++-. ..|--||-.|-.+.+... + .-++..=|+.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 568999999998742 1245555555422 246667766655544332 1 3356777888889
Q ss_pred HHHHHHHHHhhh
Q 000943 354 DEALQLFCKKAF 365 (1214)
Q Consensus 354 ~ea~~Lf~~~a~ 365 (1214)
+|-.++++...-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 999999988774
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.62 E-value=0.046 Score=63.63 Aligned_cols=49 Identities=27% Similarity=0.232 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.++.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666544345679999999999999999999887765544555654
No 271
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.61 E-value=0.26 Score=56.69 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=35.7
Q ss_pred cccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 193 LVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
+||....++++.+.+..-.....-|.|+|..|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888887777644444456789999999999999998763
No 272
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.61 E-value=0.0009 Score=70.67 Aligned_cols=34 Identities=12% Similarity=0.355 Sum_probs=16.5
Q ss_pred ccccccccccccccc-----ccccccccccCccEEecCC
Q 000943 604 PENFFELNMCYSRME-----RMWSGIKPLSNLKIMRLCN 637 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~-----~l~~~~~~L~~L~~L~Ls~ 637 (1214)
+..+++++|++|.|. .+.+.+.+-.+|+..+++.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 345555666666543 2223344445555555543
No 273
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.60 E-value=0.073 Score=53.73 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=61.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhh--h--cCC-----CCCcc---cc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQL--L--KLP-----DSGIW---DV 282 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--l--~~~-----~~~~~---~~ 282 (1214)
.+|-|++..|.||||+|...+-+...+-..+.++.-+... ...+-....+.+ ..+ . +.. ..... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888889999999998887766554455554433321 112222222222 000 0 000 00000 11
Q ss_pred cchHHHHHHHhCC-CcEEEEEeCCCCH--------HHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 283 YDGLKMIGTRLRY-RRVLLIIDDAFDL--------KQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 283 ~~~~~~l~~~L~~-kr~LlVLDdv~~~--------~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
.+..+..++.+.. +-=|+|||++-.. +++..+... ...+..||+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCC
Confidence 1122334444443 5569999997633 344444443 24678999999985
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.1 Score=64.94 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=86.6
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cC-----ccEEEEeehhhhccCCHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FE-----GSSFLANVREISEKGGLISLQ 264 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-----~~~~~~~~~~~~~~~~~~~l~ 264 (1214)
+..+||++|++++.+.|......-+ .++|.+|+|||++|.-++.++... -+ ..++-.++...
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L---------- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL---------- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH----------
Confidence 5689999999999999985433333 367999999999999999877543 11 12222222111
Q ss_pred HHHHHhhhcCCCCCcccccchHHHHHHHhC-CCcEEEEEeCCCCHH----------HHHH-HhcccCCCCCCcEEEEEeC
Q 000943 265 KQLLSQLLKLPDSGIWDVYDGLKMIGTRLR-YRRVLLIIDDAFDLK----------QLES-LAGEREWFGPGSRIIITSR 332 (1214)
Q Consensus 265 ~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~----------~l~~-l~~~~~~~~~gs~IIiTTR 332 (1214)
.... .--.+.+++...+.+.++ .+++.|++|.++..- +... |.+.+. .|.--.|-.||-
T Consensus 238 -------vAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~ 308 (786)
T COG0542 238 -------VAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTL 308 (786)
T ss_pred -------hccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccH
Confidence 1111 111234444444444443 458999999887421 1222 223221 122223445554
Q ss_pred Ccc---hhhh---cCccceeecCCCCHHHHHHHHHHhh
Q 000943 333 DEH---LLTT---YGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 333 ~~~---v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
++- +.+. -.....+.|...+.+++...+....
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 321 1000 1223578899999999999886543
No 275
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.58 E-value=0.11 Score=57.85 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...++|+++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999998877554
No 276
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.58 E-value=0.35 Score=55.69 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=38.2
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
+.++|+...++++.+.+..-.....-|.|+|..|.||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5689999999998888875444445688999999999999999875
No 277
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.56 E-value=0.031 Score=61.26 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc------cCccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE------FEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 249 (1214)
.|..+|..+-..-.++.|+|.+|.|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444554444456899999999999999999987543222 24666765
No 278
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.54 E-value=0.24 Score=61.33 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....++|....++++.+.+..-.....-|.|+|..|.|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888877544444567899999999999999998743
No 279
>PRK07667 uridine kinase; Provisional
Probab=95.49 E-value=0.028 Score=59.47 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
++.+.+.+........+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345556665444566899999999999999999999877643
No 280
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.49 E-value=0.09 Score=59.61 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..+-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3467889999999999999999998865544455554
No 281
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.47 E-value=0.3 Score=57.79 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999998887764
No 282
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.47 E-value=0.031 Score=53.82 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=54.2
Q ss_pred EEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCC
Q 000943 16 VFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRN 78 (1214)
Q Consensus 16 vFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~ 78 (1214)
|||.|. +| ..+++.+...|+..|+.+.+-.+....|..+.+.+.+++++++.+|+|++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899997 55 4889999999999999988777677999999999999999999999999995
No 283
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.46 E-value=0.16 Score=62.37 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=37.4
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.++++|.+..++.+...+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999998876643 233556799999999999999998743
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.46 E-value=0.073 Score=58.31 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|.++|..+-....++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566545456789999999999999999887664434455666765
No 285
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.45 E-value=0.063 Score=58.75 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|.++|..+-....++.|+|.+|.|||++|.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555544456789999999999999999998664433444555654
No 286
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.44 E-value=0.0094 Score=63.55 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=31.0
Q ss_pred CCCCCCCccEEeccCc--cCCCccCccccCCCCCcEEecCCCCC--CCccCcccccccccceecccccCC
Q 000943 646 DLTGLPNLEELDLRGC--TRLRDIHPSLLLHKNLVSVNLKDCTD--LTTLPNKIAMIHLRKLVLSGCSKL 711 (1214)
Q Consensus 646 ~~~~l~~L~~L~L~~c--~~l~~lp~si~~l~~L~~L~L~~c~~--l~~lp~~~~l~~L~~L~Ls~c~~l 711 (1214)
.|-.+++|++|.++.| .....++.....+++|++|+|++|.. +.+++..-.+.+|..|++.+|...
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3444445555555544 22233333333445555555555321 233343335566666666666543
No 287
>PHA00729 NTP-binding motif containing protein
Probab=95.36 E-value=0.042 Score=58.56 Aligned_cols=27 Identities=37% Similarity=0.278 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998764
No 288
>PRK06762 hypothetical protein; Provisional
Probab=95.36 E-value=0.065 Score=55.14 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.++|.|.|++|+||||+|+++++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 289
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.32 E-value=0.053 Score=55.74 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=44.2
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCC-
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRY- 295 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~- 295 (1214)
+.|.|.+|.|||++|.+++.. .....+|+... ...+ .++++.+... ........ ...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d-~em~~rI~~H-~~~R~~~w-~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFD-DEMAERIARH-RKRRPAHW-RTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCC-HHHHHHHHHH-HHhCCCCc-eEeecHHHHHHHHHhc
Confidence 679999999999999998764 23355566422 2222 2344444333 22223333 333334445555532
Q ss_pred -CcEEEEEeCCC
Q 000943 296 -RRVLLIIDDAF 306 (1214)
Q Consensus 296 -kr~LlVLDdv~ 306 (1214)
+.-.+++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 33479999753
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.13 Score=63.09 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=87.9
Q ss_pred cCcccchhhHHHHHHHHh-----h------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLID-----K------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~-----~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
....|.+...+.+.+... . +-...+.+.++|++|.|||.||+++++.....|-.. ...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v----~~~------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV----KGS------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe----eCH-------
Confidence 445566666655555443 1 123456899999999999999999998555444211 110
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH-------------HHHHHHhcccCCCCC--C
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL-------------KQLESLAGEREWFGP--G 324 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~~~--g 324 (1214)
.++...++. ......+......+..++.|.+|.++.. .-+..+...++.... +
T Consensus 311 ------~l~sk~vGe------sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ------ELLSKWVGE------SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ------HHhccccch------HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111111111 0111122233333578999999998732 123344433332233 3
Q ss_pred cEEEEEeCCcchhhhc-----CccceeecCCCCHHHHHHHHHHhhhcCC
Q 000943 325 SRIIITSRDEHLLTTY-----GVDEVLKLKELHDDEALQLFCKKAFKTH 368 (1214)
Q Consensus 325 s~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 368 (1214)
..||-||-.+..+... .-+..+.++.-+.++..+.|..+..+..
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 3455555444333321 3356889999999999999999885333
No 291
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.25 E-value=0.038 Score=62.46 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=35.7
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555554 34456689999999999999999998876665555566764
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.22 E-value=0.12 Score=54.79 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+.+...+. .+-+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344544543 234688899999999999999988876655
No 293
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.21 E-value=0.52 Score=57.91 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=41.8
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999988887555555678899999999999999998754
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.17 E-value=0.045 Score=61.93 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554 33345689999999999999999998876665555667765
No 295
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.15 E-value=0.21 Score=56.97 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998877654
No 296
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.21 Score=57.52 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
+.++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45899999999999999999998766544
No 297
>PRK09354 recA recombinase A; Provisional
Probab=95.07 E-value=0.052 Score=61.92 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555665 34455689999999999999999998876666656677775
No 298
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.04 E-value=0.031 Score=57.52 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=43.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccc---hHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYD---GLKMIGTR 292 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~---~~~~l~~~ 292 (1214)
++.|.|.+|.||||+|..++.+... ...++. .....-.+.++.+....... ...+..++. ....+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCCCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhh
Confidence 5889999999999999998775422 233433 11122334555554443322 333333322 22223322
Q ss_pred hCCCcEEEEEeCCC
Q 000943 293 LRYRRVLLIIDDAF 306 (1214)
Q Consensus 293 L~~kr~LlVLDdv~ 306 (1214)
.. +.-++++|.+.
T Consensus 74 ~~-~~~~VlID~Lt 86 (170)
T PRK05800 74 AA-PGRCVLVDCLT 86 (170)
T ss_pred cC-CCCEEEehhHH
Confidence 23 23378889764
No 299
>PTZ00494 tuzin-like protein; Provisional
Probab=95.04 E-value=2.1 Score=49.48 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=92.3
Q ss_pred cccccCcccchhhHHHHHHHHhh-hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDK-ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
+.....+|.|+.+-.-+.+.|.. +...+|++.+.|.-|.||++|.+.... ..--..+|+. ++. ....+ .
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvr---kE~~paV~VD-VRg--~EDtL----r 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVR---VEGVALVHVD-VGG--TEDTL----R 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHH---HcCCCeEEEE-ecC--CcchH----H
Confidence 34567899999998888888874 335789999999999999999987654 3334556664 432 12233 3
Q ss_pred HHHHhhhcCCCCCc-cc----ccchHHHHHHHhCCCcEEEEEeCCC--CHH----HHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 266 QLLSQLLKLPDSGI-WD----VYDGLKMIGTRLRYRRVLLIIDDAF--DLK----QLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~-~~----~~~~~~~l~~~L~~kr~LlVLDdv~--~~~----~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
.+... ++..+.+. .| +.+....-+....++.-+||+-=-+ +.. +.-.|+-. ..-++|++----+
T Consensus 437 sVVKA-LgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplE 511 (664)
T PTZ00494 437 SVVRA-LGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMK 511 (664)
T ss_pred HHHHH-hCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHh
Confidence 33433 33333222 11 1111222223344666677764222 221 12223222 3456777654333
Q ss_pred chhhh---cCccceeecCCCCHHHHHHHHHHhh
Q 000943 335 HLLTT---YGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 335 ~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
.+... +.--.-|-++.++.++|.++-.+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 22111 1112478999999999999876543
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.074 Score=55.02 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=63.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC---C-----cccccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS---G-----IWDVYD 284 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~---~-----~~~~~~ 284 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+++... .... .......+. ..-+...... . .+.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-LDLESLRKN-IAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-cCHHHHHhh-EEEEcCCchhccchHHHHhhCHHHH
Confidence 346899999999999999999987443 23444544311 0000 000000000 0000000000 0 000011
Q ss_pred hHHHHHHHhCCCcEEEEEeCCCC------HHHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 285 GLKMIGTRLRYRRVLLIIDDAFD------LKQLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 285 ~~~~l~~~L~~kr~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
..-.+.+.+..++-+++||+-.. ...+..+.... ..+..||++|.+...... .++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11234555667888999997552 22333444333 235778888888766543 4455544
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.01 E-value=0.02 Score=57.48 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=29.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..+|.|.|.+|.||||||+++.+++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999987765555554
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=94.99 E-value=0.51 Score=54.03 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999888876544
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.98 E-value=0.49 Score=60.54 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=39.3
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...++|+...++++.+.+..-.....-|.|+|..|.|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3479999999998877776443444578899999999999999998743
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=94.97 E-value=0.61 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999998888766555
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.21 Score=58.36 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887664
No 306
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.36 Score=55.82 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=78.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
|--.++|++|.|||++..++++.+ +.-++...+.++.... + ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~---d-Lr~LL~~-----------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDS---D-LRHLLLA-----------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcH---H-HHHHHHh-----------------------C
Confidence 557899999999999999987744 3445544333322211 1 2222222 2
Q ss_pred CCcEEEEEeCCCCHHH--------------------HHHHhcccC--CCCC-CcEEE-EEeCCcchhhh-----cCccce
Q 000943 295 YRRVLLIIDDAFDLKQ--------------------LESLAGERE--WFGP-GSRII-ITSRDEHLLTT-----YGVDEV 345 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gs~II-iTTR~~~v~~~-----~~~~~~ 345 (1214)
..+-+||+.|++..-+ +..|+...+ |... +-||| .||-...-+.. -..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3455667777763210 112222222 2122 23555 56655433222 234557
Q ss_pred eecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH-HHHhhhCCC
Q 000943 346 LKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS-VLGSFLCGK 402 (1214)
Q Consensus 346 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~-~lg~~L~~~ 402 (1214)
+.+.-=+.+.-..|+..+..... +. .+..+|.+...|.-+.=. +.+.++..+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 78888888888999988874433 22 234444444444433323 333344444
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.94 E-value=0.74 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|.++|..|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999888766544
No 308
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.13 Score=56.73 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567889999999999999999998884333444443
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.88 E-value=0.1 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999876543
No 310
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.049 Score=57.40 Aligned_cols=30 Identities=40% Similarity=0.583 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999988755
No 311
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.85 E-value=0.08 Score=53.02 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+++.....+.-... .+.-....-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHH
Confidence 346899999999999999999876432 2234444431100000000 10111112234555
Q ss_pred hCCCcEEEEEeCCC---CHH---HHHHHhcccCCCCCCcEEEEEeCCcchhhh
Q 000943 293 LRYRRVLLIIDDAF---DLK---QLESLAGEREWFGPGSRIIITSRDEHLLTT 339 (1214)
Q Consensus 293 L~~kr~LlVLDdv~---~~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 339 (1214)
+..++-++++|+-. |.. .+..+.... +..||++|.+...+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHH
Confidence 66677889999765 222 233333322 2468888887655443
No 312
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=0.068 Score=64.56 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=45.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
..-++..++|++|+||||||..++++.. |. ++=+. ++.......+-..+...+......+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------- 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSVLD------------- 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhccccc-------------
Confidence 4568999999999999999999877431 21 11111 2444444444444443322211110
Q ss_pred HhCCCcEEEEEeCCCCH
Q 000943 292 RLRYRRVLLIIDDAFDL 308 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~ 308 (1214)
..+++..||+|.++..
T Consensus 384 -adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGA 399 (877)
T ss_pred -cCCCcceEEEecccCC
Confidence 0368899999999854
No 313
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.84 E-value=0.033 Score=66.59 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.3
Q ss_pred ccCcccchhhHHHHHHHHh----hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 190 FKDLVGIDSRWKKLRFLID----KELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..+++|.++.++++.+.|. .-....+++.++|++|+|||+||+.+++.+...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3478999999999999883 223456899999999999999999999866443
No 314
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.82 E-value=0.28 Score=49.84 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHHhhhc-CCcEEEEEEecCCchHHHHHHHHHH
Q 000943 195 GIDSRWKKLRFLIDKEL-NGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
|.+.-++.+.+.+.... .....|+++|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44444555555443211 2345688999999999999988754
No 315
>PRK04328 hypothetical protein; Provisional
Probab=94.81 E-value=0.14 Score=56.51 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=34.3
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455555544445689999999999999999987765434445666665
No 316
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.79 E-value=0.1 Score=57.90 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCC
Q 000943 199 RWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSG 278 (1214)
Q Consensus 199 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~ 278 (1214)
.++.+..++. ....+|.|.|..|.||||+++++.+.+...-...+.+.+..+..- .+. .+ .....
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q-~~v~~-- 132 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQ-VQVNE-- 132 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eE-EEeCC--
Confidence 3344555543 233579999999999999999988766432222333332222110 010 00 00000
Q ss_pred cccccchHHHHHHHhCCCcEEEEEeCCCCHHHHHHHhc
Q 000943 279 IWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQLESLAG 316 (1214)
Q Consensus 279 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~ 316 (1214)
..-......++..|+..+=.|+++++.+.+....+..
T Consensus 133 -~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 -KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred -cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 0011235677888888999999999999987665443
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.71 E-value=0.15 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+|.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988765
No 318
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.68 E-value=0.88 Score=51.84 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=33.2
Q ss_pred eeecCCCCHHHHHHHHHHhhhcCCCCc-hHHHHHHHHHHHHhCCChHHH
Q 000943 345 VLKLKELHDDEALQLFCKKAFKTHQPW-KEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLAl 392 (1214)
.++|++++.+|+..++.-.+-.+--.. ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764332222 223445566666679999654
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.64 E-value=0.12 Score=61.93 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.++.++|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566666544445679999999999999999999887654434456654
No 320
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.61 E-value=0.028 Score=54.77 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.4
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|+|.|++|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 321
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.60 E-value=0.13 Score=53.63 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=62.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH------HHHHHHHhhhcCC---CCCccccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS------LQKQLLSQLLKLP---DSGIWDVY 283 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~------l~~~ll~~ll~~~---~~~~~~~~ 283 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+++... ... ...... ...+++.. ++.. ......+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~-~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALEL-LGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHH-cCCHhHhcCCcccCC
Confidence 346899999999999999999876432 33455555311 010 001111 11112222 1111 11112222
Q ss_pred ch---HHHHHHHhCCCcEEEEEeCCC---CHH---HHHHHhcccCCCCC-CcEEEEEeCCcchhhh
Q 000943 284 DG---LKMIGTRLRYRRVLLIIDDAF---DLK---QLESLAGEREWFGP-GSRIIITSRDEHLLTT 339 (1214)
Q Consensus 284 ~~---~~~l~~~L~~kr~LlVLDdv~---~~~---~l~~l~~~~~~~~~-gs~IIiTTR~~~v~~~ 339 (1214)
.+ .-.+.+.+...+-++++|+-. +.+ .+..+..... .. +..||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHHHHH
Confidence 22 233555666788899999765 222 2333332221 22 6788888887665433
No 322
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.59 E-value=0.13 Score=57.75 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999998866543
No 323
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.58 E-value=0.13 Score=61.79 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666544455689999999999999999999876654434455654
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.56 E-value=0.13 Score=57.17 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=62.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC----C-cccccchHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS----G-IWDVYDGLK 287 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~----~-~~~~~~~~~ 287 (1214)
+...++|.|..|.|||||++.++..+... .+.+++.. ..+.......++... ... ...... + ...... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~-~~~-~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGC-VNG-VPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHH-hcc-cccccccccccccccchH-HH
Confidence 45789999999999999999998766433 23333321 011100011111111 111 111100 0 011111 11
Q ss_pred HHHHHh-CCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcch
Q 000943 288 MIGTRL-RYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHL 336 (1214)
Q Consensus 288 ~l~~~L-~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 336 (1214)
.+...+ ...+=++|+|.+...+.+..+.... ..|..||+||-+..+
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 222222 3578899999998887777776554 257889999987554
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.55 E-value=0.092 Score=60.88 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=62.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE-eehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA-NVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
...|.|.|+.|.||||+++++.+.+.......++.. +..+.... . ...+ ....... .+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~----~~~~----i~q~evg-~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-N----KRSL----INQREVG-LDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-C----ccce----EEccccC-CCCcCHHHHHHHh
Confidence 367999999999999999998887765544444432 11111000 0 0000 0000111 1122345667888
Q ss_pred hCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 293 LRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
|+..+=.|++|.+.+.+......... ..|..|+.|.-..
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 88999999999999888766543321 2454555555443
No 326
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.48 E-value=0.17 Score=56.52 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=26.1
Q ss_pred cEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 297 RVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 297 r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
+.+||+|.+++. .++..+... .|.||||+.|---
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~ 387 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDP 387 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCH
Confidence 568999999965 567777655 3899999988753
No 327
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.38 E-value=0.036 Score=58.67 Aligned_cols=26 Identities=42% Similarity=0.714 Sum_probs=23.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
+|+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988644
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.38 E-value=0.22 Score=60.43 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=41.1
Q ss_pred cCcccchhhHHHHHHHHhh---hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 191 KDLVGIDSRWKKLRFLIDK---ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
.+++--..-++++..||.. +....+++.+.|++|.||||.++.+++.+. |+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 4555556778889888874 223467899999999999999999998653 3444443
No 329
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.12 Score=54.70 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 192 DLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+.=|=.++++++.+... .+-+..+-|.++|++|.|||-+|++|+++. ..+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 34466777777766543 122446778999999999999999998865 345665
No 330
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.33 E-value=0.054 Score=64.05 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=38.5
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++||++.++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 457999999999887777533 45789999999999999999886543
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.33 E-value=0.064 Score=58.46 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.8
Q ss_pred cCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 211 LNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 211 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.....+|+|.|+.|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999877654
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.32 E-value=0.1 Score=53.75 Aligned_cols=124 Identities=22% Similarity=0.177 Sum_probs=61.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEe---ehhhhccCCH--HHHHHHHHHhhhcCCCCCcccccchHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLAN---VREISEKGGL--ISLQKQLLSQLLKLPDSGIWDVYDGLK 287 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~~~~~~~--~~l~~~ll~~ll~~~~~~~~~~~~~~~ 287 (1214)
.-.+++|.|..|.|||||++.++..... ..+.+++.. +.-+.+...+ ..+.+.+... .....+.-....-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHH
Confidence 3468999999999999999998864322 223333221 0001111111 1122222110 1111111122223
Q ss_pred HHHHHhCCCcEEEEEeCCCC---HH---HHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 288 MIGTRLRYRRVLLIIDDAFD---LK---QLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 288 ~l~~~L~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
.+.+.+..++=++++|+-.. .+ .+..+.... +..||++|.+..... ..++++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEE
Confidence 35555667788889997542 22 233333322 356888887766543 24455554
No 333
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.32 E-value=0.18 Score=52.61 Aligned_cols=123 Identities=20% Similarity=0.137 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhh-cCCCCC----------ccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLL-KLPDSG----------IWD 281 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll-~~~~~~----------~~~ 281 (1214)
.-.+++|.|..|.|||||++.++..... ..+.+++... . +......+-..+. -..... ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-P------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-E------HHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 3468999999999999999998764322 2334444311 0 0000000000000 000000 111
Q ss_pred cc---chHHHHHHHhCCCcEEEEEeCCCC---HH---HHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 282 VY---DGLKMIGTRLRYRRVLLIIDDAFD---LK---QLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 282 ~~---~~~~~l~~~L~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
+. ...-.+.+.+..++=++++|+-.. .. .+..+.... ..+..||++|.+...... .++++.+
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 112234555667888899998653 22 232333222 236788888888766542 4555544
No 334
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.31 E-value=0.13 Score=59.07 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEE
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 249 (1214)
..+.++|..+-....++-|+|++|+|||++|.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344455544444568899999999999999999876543221 2566665
No 335
>PRK07261 topology modulation protein; Provisional
Probab=94.30 E-value=0.031 Score=57.75 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988754
No 336
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.19 E-value=0.068 Score=59.10 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+.|.++|..+-....+.=|+|.+|+|||+||..++-..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 35556664333445688899999999999998877543
No 337
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.2 Score=55.52 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 203 LRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 203 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+.++|..+-...+++=|+|+.|.||||+|.+++-..+..-..++|+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 34445434456688999999999999999998877766666788887
No 338
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.19 E-value=0.1 Score=54.24 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...+|+|.|++|.||||+|++++..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987754
No 339
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.01 E-value=0.53 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 340
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.01 E-value=0.12 Score=53.10 Aligned_cols=29 Identities=31% Similarity=0.396 Sum_probs=24.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFE 243 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 243 (1214)
+.|.+.|.+|+||||+|+++++.++..-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 46788999999999999999987766543
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.98 E-value=0.11 Score=53.32 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=59.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
.-.+++|.|..|.|||||.+.++.... ...+.+++... .... ...... .......- ...+.-....-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~-~~~~~~----~~~~i~~~-~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF-ASPRDA----RRAGIAMV-YQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc-CCHHHH----HhcCeEEE-EecCHHHHHHHHHHHH
Confidence 346899999999999999999876432 23445554321 1110 011110 00000000 0011111122334555
Q ss_pred hCCCcEEEEEeCCCC---HH---HHHHHhcccCCCCCCcEEEEEeCCcchhhh
Q 000943 293 LRYRRVLLIIDDAFD---LK---QLESLAGEREWFGPGSRIIITSRDEHLLTT 339 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 339 (1214)
+-.++-++++|+-.. .. .+..+..... ..|..||++|.+...+..
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 667788899998652 22 2323332221 346788888888654443
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.97 E-value=0.032 Score=53.50 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcccCc
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAHEFEG 244 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 244 (1214)
|.|+|.+|+|||++|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777754
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.93 E-value=0.13 Score=60.01 Aligned_cols=21 Identities=48% Similarity=0.774 Sum_probs=19.3
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVY 235 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~ 235 (1214)
-.++|+|+.|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 468999999999999999986
No 344
>PTZ00301 uridine kinase; Provisional
Probab=93.92 E-value=0.052 Score=57.92 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775544
No 345
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.23 Score=54.33 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=25.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
-+..++|||++|-|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 457899999999999999999998775544
No 346
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.87 E-value=0.085 Score=55.41 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhh-cCCCCCcccccchHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLL-KLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll-~~~~~~~~~~~~~~~~l~~ 291 (1214)
....++|.|..|.||||+++.+...+... ...+.+.+..+..... .... ++. ..............+.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 34689999999999999999988766432 2233332221111000 0000 000 0000001111233556667
Q ss_pred HhCCCcEEEEEeCCCCHHHHHHHh
Q 000943 292 RLRYRRVLLIIDDAFDLKQLESLA 315 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~~l~~l~ 315 (1214)
.++..+=.++++.+.+.+.+..+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 777788899999999887655443
No 347
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=1.2 Score=47.26 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=88.7
Q ss_pred cCcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++=|-+..++++.+.+- .+-..++-|..+|++|.|||-+|++.+.+....|-.- .+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------Ag 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------AG 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh------------cc
Confidence 455566777777665543 1123456788999999999999999877554443110 00
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh----CCCcEEEEEeCCCCHH--------------H--HHHHhcccC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL----RYRRVLLIIDDAFDLK--------------Q--LESLAGERE 319 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--l~~l~~~~~ 319 (1214)
.++.+-++ + ++...++... ...+..|.+|.++... | .-.++..++
T Consensus 239 -PQLVQMfI----G----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 239 -PQLVQMFI----G----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred -hHHHhhhh----c----------chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 11111111 1 1122222221 3468889999876211 1 223444555
Q ss_pred CCCC--CcEEEEEeCCcch-----hhhcCccceeecCCCCHHHHHHHHHHhhhcCCC-CchHHHHHHHH
Q 000943 320 WFGP--GSRIIITSRDEHL-----LTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQ-PWKEYEQLSKY 380 (1214)
Q Consensus 320 ~~~~--gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~ 380 (1214)
-|.+ .-+||..|..-.+ +..-.-++.++.+--+++.-.+++.-+..+-.. +.-+++++++.
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 4444 4566766654333 233344567787777776666666666544332 34456666553
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.82 E-value=0.092 Score=51.29 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 198 SRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 198 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
++.+++.+.+...-....+|.+.|.-|.||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555555333445689999999999999999999865
No 349
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.80 E-value=0.39 Score=57.57 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|+|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999988766543
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.79 E-value=0.17 Score=54.87 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=66.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEe--ehhhhccCCHHHHHHHHHHhhhcC------CCCCcccccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLAN--VREISEKGGLISLQKQLLSQLLKL------PDSGIWDVYD 284 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~~~~~~~~~l~~~ll~~ll~~------~~~~~~~~~~ 284 (1214)
...+++|+|..|.||||+++.+..-.... .+.+++.. +.... .....+...+++....-. -......-..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45789999999999999999988744332 33444431 11111 122233344455442211 1111111112
Q ss_pred hHHHHHHHhCCCcEEEEEeCCCCH------HHHHHHhcccCCCCCCcEEEEEeCCcchhhhc
Q 000943 285 GLKMIGTRLRYRRVLLIIDDAFDL------KQLESLAGEREWFGPGSRIIITSRDEHLLTTY 340 (1214)
Q Consensus 285 ~~~~l~~~L~~kr~LlVLDdv~~~------~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 340 (1214)
..-.|.+.|.-++-++|.|.--+. .|+-.+...+. ...|-..+..|-|-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 223467788889999999975432 33333333222 12455666667665555443
No 351
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=6.5 Score=44.42 Aligned_cols=166 Identities=11% Similarity=0.063 Sum_probs=89.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc---------cC-ccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE---------FE-GSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------F~-~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
+.+...+..+ .-.++..++|..|+||+++|+++.+.+-.. .+ ...++. ..+ ....+.++. ++...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHH-HHHHH
Confidence 3344444322 335777899999999999999999876211 11 111111 000 011111111 11111
Q ss_pred hhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEEEeCC-cchhhh-cCcccee
Q 000943 271 LLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIIITSRD-EHLLTT-YGVDEVL 346 (1214)
Q Consensus 271 ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~ 346 (1214)
+.-. ..-.+++=++|+|+++... ....|...+....+++.+|++|.+ ..+.+. ......+
T Consensus 81 ~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 81 LYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred hccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 1000 0001467788899988653 344555555544677777766644 444443 2335689
Q ss_pred ecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 347 KLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
++.++++++..+.+.... .+ .+.+..++...+|.=-|+..+
T Consensus 145 ~f~~l~~~~l~~~l~~~~----~~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN----KE----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ECCCCCHHHHHHHHHHcC----CC----hhHHHHHHHHcCCHHHHHHHH
Confidence 999999999998876541 11 233555666667633455443
No 352
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.76 E-value=0.15 Score=52.87 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCC--------cccccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSG--------IWDVYD 284 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~--------~~~~~~ 284 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+.+... ... ........+.+ .-+....... .+.-..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 346899999999999999999886442 23444444311 110 00111111110 0000000000 000111
Q ss_pred hHHHHHHHhCCCcEEEEEeCCCC---H---HHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 285 GLKMIGTRLRYRRVLLIIDDAFD---L---KQLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 285 ~~~~l~~~L~~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
..-.+.+.+..++=++++|+-.. . ..+..+..... ..|..||++|.+..... . .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 12234455666777899997652 2 22333333221 24677888888876653 3 4555554
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.76 E-value=0.16 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=22.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.|.+.|++|+||||+|+++++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 354
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.74 E-value=0.53 Score=63.59 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+-|.++|++|.|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999998754
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.72 E-value=0.14 Score=56.85 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+.|.|+|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987765
No 356
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.70 E-value=0.055 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 357
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.31 Score=59.22 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=96.1
Q ss_pred ccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..+..|.|+..+++.+.++. +..=++-|.++|++|.|||.||++++....-.| .. .|. .
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSG-S- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG-S- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccc-h-
Confidence 46778988888777776651 112256689999999999999999987443222 11 000 0
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCCCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWFGP 323 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~~ 323 (1214)
++..-..+.. .....+...+..++-++.|++|.++... .+.++....+-++.
T Consensus 218 ------~FVemfVGvG------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 ------DFVEMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ------hhhhhhcCCC------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 0000001110 0111233344445678999999876321 25566666665553
Q ss_pred --CcEEEEEeCCcchhh-h----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 324 --GSRIIITSRDEHLLT-T----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 324 --gs~IIiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
|-.|+..|-.+.|+. . -+-++.+.++..+-..-.+.+.-|+-...-. ...++. .|++.+-|.-.|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vdl~-~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--EDVDLK-KIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--CcCCHH-HHhhhCCCcccc
Confidence 333343444344432 2 2345677787777777777777666333222 111111 266666665444
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.70 E-value=0.2 Score=51.97 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=59.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEee--hhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANV--REISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIG 290 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~ 290 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+.+... .-..+... .+.-....-.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 346899999999999999999876432 22344444211 00000000 111111223345
Q ss_pred HHhCCCcEEEEEeCCCC---HHH---HHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeecC
Q 000943 291 TRLRYRRVLLIIDDAFD---LKQ---LESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKLK 349 (1214)
Q Consensus 291 ~~L~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 349 (1214)
+.+..++-++++|.-.. ... +..+...... ..+..||++|.+......+ .++++.+.
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 55667788999997642 222 2222222211 1235678888776554432 23344443
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.69 E-value=0.5 Score=52.93 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=34.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
...++.|.|.+|+||||+|.+++...... -..++|+. . .....++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~-----E~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-L-----EEPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-c-----ccCHHHHHHHHHHH
Confidence 45688899999999999999988766444 34455554 1 22334555555444
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.69 E-value=0.58 Score=47.91 Aligned_cols=116 Identities=15% Similarity=0.017 Sum_probs=60.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC------Cc----ccccc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS------GI----WDVYD 284 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~------~~----~~~~~ 284 (1214)
.+|-|++-.|.||||.|..++-+...+--.++++.-+... ...+-....+.+.-.+...... +. ....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5778888899999999988887665543344333322221 1112222222220000000000 00 01122
Q ss_pred hHHHHHHHhCC-CcEEEEEeCCC--------CHHHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 285 GLKMIGTRLRY-RRVLLIIDDAF--------DLKQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 285 ~~~~l~~~L~~-kr~LlVLDdv~--------~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
+.+..++.+.. +-=|+|||.+- +.+++-.++.. ..++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 33444555544 45699999876 33444444443 24678999999985
No 361
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.68 E-value=0.19 Score=56.36 Aligned_cols=122 Identities=22% Similarity=0.209 Sum_probs=70.0
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
+.+.-.....+++.++|...-.....|.|.|..|.||||+++++.+.+...-...+-+.+..|..-
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l-------------- 169 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL-------------- 169 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S----------------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee--------------
Confidence 334333444456666665433346889999999999999999998876555122333332222110
Q ss_pred hhcCCCC-C--c-ccccchHHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEE-EEEeC
Q 000943 271 LLKLPDS-G--I-WDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRI-IITSR 332 (1214)
Q Consensus 271 ll~~~~~-~--~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~I-IiTTR 332 (1214)
..... . . .+.....+.++..|+..+=.+|++.+.+.+....+... ..|..+ +-|..
T Consensus 170 --~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 170 --PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred --cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000 0 0 12334567788888888889999999998877764433 356666 44443
No 362
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.66 E-value=0.062 Score=57.68 Aligned_cols=27 Identities=41% Similarity=0.664 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.59 E-value=0.59 Score=46.52 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=33.2
Q ss_pred hHHHHHhhhccEEEEEecCCcccchhhHHHHHHHHHHHhcCCCceEEEEEEEeec
Q 000943 59 PGLFKAIEESRISIIVFSRNYAHSTWCLDELVKIVELKSTNGQQQVIFPIFYDVE 113 (1214)
Q Consensus 59 ~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~~~v~Pi~~~v~ 113 (1214)
.++.++|++++.+|+|++-....+.+. .++.+.+.... .+. .++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k--~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRK--KNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCC--cEEEEEechh
Confidence 478899999999999998766555552 25555554331 233 5676664444
No 364
>PRK08233 hypothetical protein; Provisional
Probab=93.57 E-value=0.055 Score=56.55 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987653
No 365
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.56 E-value=0.18 Score=52.21 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=62.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCC----------cccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSG----------IWDV 282 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~----------~~~~ 282 (1214)
.-.+++|.|..|.|||||++.++.... ...+.+++... .... .. ....+. ..-+....... .+.-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~~-~~~~~~-i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKK-EP-EEVKRR-IGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Eccc-ch-Hhhhcc-EEEEecCCccccCCcHHHHhhcCHH
Confidence 346899999999999999999876432 23344444211 0000 00 000000 00000000000 0001
Q ss_pred cchHHHHHHHhCCCcEEEEEeCCCC---H---HHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 283 YDGLKMIGTRLRYRRVLLIIDDAFD---L---KQLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 283 ~~~~~~l~~~L~~kr~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
....-.+.+.+..++-++++|+-.. . ..+..+...+. ..|..||++|.+...+... .++++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 1112235566677888999998652 2 22333333222 2367889999887655533 2344443
No 366
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=0.47 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=24.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..+++++|+.|+||||++.+++.+...++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999999999998765443
No 367
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.54 E-value=0.047 Score=51.54 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=21.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhccc
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988765543
No 368
>PRK15115 response regulator GlrR; Provisional
Probab=93.51 E-value=2.1 Score=51.83 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=34.2
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..++|....+.++.+....-......|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766655544322334567799999999999999987743
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.50 E-value=0.6 Score=56.87 Aligned_cols=273 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred hHHHHHhhhccEEEEEecCCcccchhhHHHHHHHHHHHhcCCCceEEEEEEEeecccccccccchhHHhhhhhHhhhccc
Q 000943 59 PGLFKAIEESRISIIVFSRNYAHSTWCLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEETFRMN 138 (1214)
Q Consensus 59 ~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~~~~~~ 138 (1214)
.++.+-+.+-+-+|+|+| -.++=+++.+..+-.-+.+.. ..|.=.-+....|.-.-.+..++..++.++.
T Consensus 190 ~WLe~~L~~~~gtviiVS----HDR~FLd~V~t~I~~ld~g~l------~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~ 259 (530)
T COG0488 190 EWLEDYLKRYPGTVIVVS----HDRYFLDNVATHILELDRGKL------TPYKGNYSSYLEQKAERLRQEAAAYEKQQKE 259 (530)
T ss_pred HHHHHHHHhCCCcEEEEe----CCHHHHHHHhhheEEecCCce------eEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHhhhhcccCcccc--ccccccC------------cccchhhHHHHH
Q 000943 139 IEKVQKWRDALKKVANISGWELKDRNESEFIVDIVKDILKMSSKIPA--KFDIFKD------------LVGIDSRWKKLR 204 (1214)
Q Consensus 139 ~~~~~~w~~aL~~~a~~~g~~~~~~~e~~~i~~i~~~i~~~~~~~~~--~~~~~~~------------~vGr~~~l~~l~ 204 (1214)
..+.+.|-......+..+...-......+-+++..........-.+. .+..++. -+|.+.. ..+.
T Consensus 260 ~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~ 338 (530)
T COG0488 260 LAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLL 338 (530)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceee
Q ss_pred HHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE-----------------------EeehhhhccCCHH
Q 000943 205 FLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL-----------------------ANVREISEKGGLI 261 (1214)
Q Consensus 205 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-----------------------~~~~~~~~~~~~~ 261 (1214)
.-+...-..-..|+|+|+-|+|||||.+.+....... .+.+-+ ..+++...... .
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e 416 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-E 416 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-H
Q ss_pred HHHHHHHHhh------hcCCCCCcccccchHHHHHHHhCCCcEEEEEe------CCCCHHHHHHHhcccCCCCCCcEEEE
Q 000943 262 SLQKQLLSQL------LKLPDSGIWDVYDGLKMIGTRLRYRRVLLIID------DAFDLKQLESLAGEREWFGPGSRIII 329 (1214)
Q Consensus 262 ~l~~~ll~~l------l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLD------dv~~~~~l~~l~~~~~~~~~gs~IIi 329 (1214)
...+..+... ....-...+.-+...-.+...+-.++=+|||| |++..+.++..+..++ +.||+
T Consensus 417 ~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~ 491 (530)
T COG0488 417 QEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLL 491 (530)
T ss_pred HHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEE
Q ss_pred EeCCcchhhhcCccceeecCC
Q 000943 330 TSRDEHLLTTYGVDEVLKLKE 350 (1214)
Q Consensus 330 TTR~~~v~~~~~~~~~~~l~~ 350 (1214)
.|-|+....... .+++.+.+
T Consensus 492 VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 492 VSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred EeCCHHHHHhhc-ceEEEEcC
No 370
>PRK03839 putative kinase; Provisional
Probab=93.50 E-value=0.058 Score=56.35 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998774
No 371
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.47 E-value=0.92 Score=55.36 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=38.3
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
..++|....+.++...+.........|.|.|.+|.|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899999888888777654445566889999999999999998774
No 372
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.46 E-value=0.58 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+..|+|++|+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999887554
No 373
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.44 E-value=0.35 Score=50.24 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=62.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH-Hhhh--cCC-----CCC---ccc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL-SQLL--KLP-----DSG---IWD 281 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll-~~ll--~~~-----~~~---~~~ 281 (1214)
....|.|+|-.|-||||.|..++-+...+--.+.++.-+.... ..+-...++.+- -.+. +.. ... ...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 3468899999999999999988876655544444444333221 112222222210 0000 000 000 011
Q ss_pred ccchHHHHHHHhC-CCcEEEEEeCCCC--------HHHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 282 VYDGLKMIGTRLR-YRRVLLIIDDAFD--------LKQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 282 ~~~~~~~l~~~L~-~kr~LlVLDdv~~--------~~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
..++.+..++.+. ++-=|+|||.+-. .+++-.++.. ..++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCC
Confidence 1122344445554 4556999998763 3344444433 24678999999985
No 374
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.42 E-value=0.26 Score=53.64 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 204 RFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 204 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.+.+..+-....++.|.|.+|.||||+|.+++.....+-..++|+.
T Consensus 14 d~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 14 HKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred ehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3334323344569999999999999998776654433334455554
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.39 E-value=0.61 Score=53.63 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..++++++|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999998876644433344443
No 376
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.39 E-value=0.25 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVY 235 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~ 235 (1214)
.-.+++|+|+.|.|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999875
No 377
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.38 E-value=0.77 Score=59.86 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=108.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcc-c---CccEEEEeehhh-hccCCHHH-HHHHHHHhhhcCCCCCcccccchHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHE-F---EGSSFLANVREI-SEKGGLIS-LQKQLLSQLLKLPDSGIWDVYDGLKM 288 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F---~~~~~~~~~~~~-~~~~~~~~-l~~~ll~~ll~~~~~~~~~~~~~~~~ 288 (1214)
.-+.|+|.+|.||||+...++-....+ + +..+++. .... .......+ .....+...+.... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHH
Confidence 368899999999999999887644322 2 2223332 1100 00011111 11222222111111 11111222
Q ss_pred HHHHhCCCcEEEEEeCCCCHHH---------HHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeecCCCCHHHHHHH
Q 000943 289 IGTRLRYRRVLLIIDDAFDLKQ---------LESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKLKELHDDEALQL 359 (1214)
Q Consensus 289 l~~~L~~kr~LlVLDdv~~~~~---------l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L 359 (1214)
..+.+...++++++|.++.... +..+.+. -+.+.+|+|+|....-.....-..+++..+.++.....
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 2567889999999999886432 3333333 35889999999864443333344566666666655433
Q ss_pred HH-----Hh---hhcCCCCc-hHH-HHH---HHHHHHHhCCChHHHHHHHhhhC------CCChHHHHHHHHHHhcCCCc
Q 000943 360 FC-----KK---AFKTHQPW-KEY-EQL---SKYVVKYSGGLPLALSVLGSFLC------GKTTKEWESSIQRLKRDSEK 420 (1214)
Q Consensus 360 f~-----~~---a~~~~~~~-~~~-~~~---~~~i~~~~~GlPLAl~~lg~~L~------~~~~~~w~~~l~~l~~~~~~ 420 (1214)
.. .. .++..... ..+ ..+ ..+.++.....|++|.+.+..-. ....+-++.+++.+-...+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~ 453 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDE 453 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccch
Confidence 22 11 11111111 011 111 12233444778999888874433 13445556666555443332
Q ss_pred cHHHHHHHhHhCCCH-HHHH-HHHhhcc
Q 000943 421 DILDILQISFDGLKE-IERK-IFLDIAC 446 (1214)
Q Consensus 421 ~i~~~l~~sy~~L~~-~~k~-~fl~la~ 446 (1214)
.-.......|+.+.. ...+ ++..+|.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~ 481 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAA 481 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHH
Confidence 222223344555433 2233 4444443
No 378
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.34 E-value=0.67 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++++++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998887665
No 379
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.28 E-value=0.13 Score=59.57 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=39.3
Q ss_pred ccCcccchhhHHHHHHHHhhh------------cCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE------------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..++||.++..+.+...+... ....+.|.++|++|+|||++|++++..+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 356889888888776555421 11246789999999999999999998775443
No 380
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.20 E-value=1 Score=57.24 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=36.8
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
.+.++|.+..+.++.+....-.....-|.|+|..|.||+++|+++.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 456888888888777766643333345789999999999999999774
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.14 E-value=0.55 Score=48.57 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
++.+.|++|.||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 382
>PRK00625 shikimate kinase; Provisional
Probab=93.13 E-value=0.07 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.++||+|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 383
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.07 E-value=0.088 Score=56.38 Aligned_cols=28 Identities=43% Similarity=0.631 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
....+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999999988654
No 384
>PHA02244 ATPase-like protein
Probab=93.04 E-value=0.23 Score=56.85 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=33.7
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....++|...........+..--....-|.|+|++|+|||+||+++++....
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4456788766665433333211112234778999999999999999987543
No 385
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.04 E-value=0.34 Score=50.81 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=25.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999998776544445566664
No 386
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.01 E-value=0.27 Score=50.21 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCcEEEEEe----CCCCHHHHHH--HhcccCCCCCCcEEEEEeCCcchhhhcC
Q 000943 286 LKMIGTRLRYRRVLLIID----DAFDLKQLES--LAGEREWFGPGSRIIITSRDEHLLTTYG 341 (1214)
Q Consensus 286 ~~~l~~~L~~kr~LlVLD----dv~~~~~l~~--l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 341 (1214)
.-.|.+.+-+++-+|+-| |++....|+- +...+ ...|..||++|-+.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 345667778899999999 4554444443 33332 257999999999998877764
No 387
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.99 E-value=0.24 Score=56.50 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC-CHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG-GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~-~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
....++|.|..|.||||+++++...+... ...+.+.+..+..... ... .+...........-...+.+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~--------~l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYV--------HLFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEE--------EEEecCCCCCcCccCHHHHHHH
Confidence 45789999999999999999988755432 2233343333321110 000 0000000000111223456677
Q ss_pred HhCCCcEEEEEeCCCCHHHHHHH
Q 000943 292 RLRYRRVLLIIDDAFDLKQLESL 314 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~~l~~l 314 (1214)
.|+..+=.||+|.+...+.++.+
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l 236 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFI 236 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHH
Confidence 78888889999999987655443
No 388
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.98 E-value=0.24 Score=53.47 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++.+.+........+|||.|++|.|||||..++...+..+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999988876654
No 389
>PRK05973 replicative DNA helicase; Provisional
Probab=92.97 E-value=0.39 Score=52.02 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34578999999999999999998775544444455554
No 390
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.94 E-value=1.8 Score=47.61 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=74.7
Q ss_pred cccccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH
Q 000943 183 IPAKFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 183 ~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
...+....+.|+|-..- +++...+.......+.+.++|++|+|||+-++.+++.. + ..|+. +.++.+....
T Consensus 64 q~~~~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p-~~~l~---~~~p~~~a~~ 134 (297)
T COG2842 64 QAALEKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----P-NALLI---EADPSYTALV 134 (297)
T ss_pred ccccccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----c-cceee---cCChhhHHHH
Confidence 33444566788886543 23334444333344589999999999999999987643 2 22332 1344444455
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhccc
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGER 318 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~ 318 (1214)
++..+....+..... ........+..++++..-++++|+.+.. ..++.+....
T Consensus 135 ~i~~i~~~~~~~~~~---~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 135 LILIICAAAFGATDG---TINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHHHHHHHhcccch---hHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 555555554443322 3344566667777888889999988854 3455554433
No 391
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.90 E-value=0.19 Score=58.42 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=39.4
Q ss_pred ccCcccchhhHHHHHHHHhhh--------c----CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE--------L----NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...++|.+...+.+...+... . ...+.|.++|++|+|||++|+.++..+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 356899998888887776421 0 113678999999999999999999876443
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.90 E-value=0.084 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=23.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|.|+|++|.||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 393
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.83 E-value=0.21 Score=56.53 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHhCCCcEEEEEeCCCCH-HH--HHHHhcccCCC--CCCcEEEEEeCCcchhhhcCcccee
Q 000943 287 KMIGTRLRYRRVLLIIDDAFDL-KQ--LESLAGEREWF--GPGSRIIITSRDEHLLTTYGVDEVL 346 (1214)
Q Consensus 287 ~~l~~~L~~kr~LlVLDdv~~~-~~--l~~l~~~~~~~--~~gs~IIiTTR~~~v~~~~~~~~~~ 346 (1214)
..|.+.++.++=+++.|.+... +. ...++..+... ..|+.+++.|+.+.+..++..+..+
T Consensus 516 ~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 4566777888889999987632 11 11122111111 2678888888888888887666443
No 394
>PRK04040 adenylate kinase; Provisional
Probab=92.83 E-value=0.095 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|+|++|.||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988774
No 395
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.82 E-value=0.36 Score=53.68 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG 244 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 244 (1214)
.+..+|.|.|.+|.|||||+..+.+.+......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 568999999999999999999999988766533
No 396
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.81 E-value=0.36 Score=55.28 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+..+|..+-....++-|+|.+|+|||++|.+++....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555654434568889999999999999999876543
No 397
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.80 E-value=0.48 Score=58.25 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=37.3
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..++++|....++++.+.+..-...-.-|.|+|..|.||+.+|+++..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 446899999988888777753323334578999999999999999765
No 398
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.80 E-value=0.51 Score=49.75 Aligned_cols=26 Identities=38% Similarity=0.393 Sum_probs=22.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.++.|.|++|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999998876543
No 399
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.77 E-value=0.45 Score=58.54 Aligned_cols=50 Identities=20% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEE
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLA 249 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 249 (1214)
+..|.+.|..+-...+++.|.|.+|+|||+||.+++.....+ -..++|+.
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 345556665444567899999999999999999987654444 34556664
No 400
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.75 E-value=0.31 Score=59.37 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+..+.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777655556789999999999999999999887655555666664
No 401
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.75 E-value=0.3 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 402
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.74 E-value=0.093 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+..+|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 403
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.73 E-value=0.27 Score=53.30 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHhCCCcEEEEEeC----CC--CHHHHHHHhcccCCCCCCcEEEEEeCCcchhhh
Q 000943 287 KMIGTRLRYRRVLLIIDD----AF--DLKQLESLAGEREWFGPGSRIIITSRDEHLLTT 339 (1214)
Q Consensus 287 ~~l~~~L~~kr~LlVLDd----v~--~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 339 (1214)
-.+.+.|..++=|+|||. |+ ....+-.+...+. ..|..||++|-|-.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 346778889999999994 33 3344555555543 348899999998655444
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.70 E-value=0.62 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
++.|.|++|+||||+|+.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999987763
No 405
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.68 E-value=0.15 Score=52.41 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=33.6
Q ss_pred cccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 193 LVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
+||.+..+.++.+.+..-.....-|.|+|..|.||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888888775444445677999999999999999987
No 406
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.63 E-value=0.048 Score=35.06 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=10.9
Q ss_pred CcEEeCCCCCCeecCcccC
Q 000943 877 LKELCLSKNKFILLPESIS 895 (1214)
Q Consensus 877 L~~L~L~~n~l~~lp~~i~ 895 (1214)
|++|+|++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666556655443
No 407
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.4 Score=51.09 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.-.+++|+|..|.|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346899999999999999999876543
No 408
>PRK08356 hypothetical protein; Provisional
Probab=92.61 E-value=0.27 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.5
Q ss_pred cEEEEEEecCCchHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVY 235 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~ 235 (1214)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999983
No 409
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.23 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 410
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.60 E-value=0.32 Score=55.36 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..|..+|..+-...+++-|+|++|+|||+|+..++-
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 445556654445568899999999999999988764
No 411
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=1 Score=55.13 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=75.2
Q ss_pred CcccchhhHHHHHHHHh----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHH
Q 000943 192 DLVGIDSRWKKLRFLID----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLI 261 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~ 261 (1214)
+.=|.++-..+|.+-+. .+-....=|.++|++|.|||-+|++|+-...=.| +. |.. .
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-VKG-------P 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-VKG-------P 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-ecC-------H
Confidence 34456666666665443 1222344688999999999999999987554332 22 211 1
Q ss_pred HHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH---------------HHHHHhcccCCCC----
Q 000943 262 SLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK---------------QLESLAGEREWFG---- 322 (1214)
Q Consensus 262 ~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---------------~l~~l~~~~~~~~---- 322 (1214)
+++... .++.. +...+...+.-..++++|.+|.+++.. -+.+++..++..+
T Consensus 740 ELLNMY----VGqSE------~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 740 ELLNMY----VGQSE------ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred HHHHHH----hcchH------HHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 222221 11111 111222333334689999999998532 1334444443222
Q ss_pred CCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHH
Q 000943 323 PGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQ 358 (1214)
Q Consensus 323 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~ 358 (1214)
.+--||=+|-.++++.. -+-++.+.|++=+.++...
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 33445555554444332 1334566666655555443
No 412
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.49 E-value=0.34 Score=52.29 Aligned_cols=25 Identities=44% Similarity=0.725 Sum_probs=22.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+|||.|..|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 413
>PRK13947 shikimate kinase; Provisional
Probab=92.49 E-value=0.094 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999877443
No 414
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.45 E-value=0.65 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
+++|+|..|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 415
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.45 E-value=0.45 Score=53.87 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=53.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhccc--CccEEEEeehhhhcc-CCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEF--EGSSFLANVREISEK-GGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~~~~-~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
+.+.|.|..|.||||+++++++.+.... ...+-+.+..|..-. .... . +.. .. ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~-~~~-~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------Q-LRT-SD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------E-EEe-cC---CCCCHHHHHHH
Confidence 5678999999999999999998775532 223333333332110 0000 0 000 00 11144567888
Q ss_pred HhCCCcEEEEEeCCCCHHHHHHH
Q 000943 292 RLRYRRVLLIIDDAFDLKQLESL 314 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~~l~~l 314 (1214)
.|+..+=.||+..+.+.+.++.+
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHH
Confidence 88888989999999998766544
No 416
>PRK06547 hypothetical protein; Provisional
Probab=92.42 E-value=0.12 Score=53.32 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998864
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.41 E-value=0.4 Score=50.67 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=26.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEEee
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANV 251 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 251 (1214)
.|+|+|-||+||||+|..++.++.++-...+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777665553344555443
No 418
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.31 E-value=0.15 Score=53.23 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=22.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 419
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.28 E-value=2 Score=50.83 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHh-----hhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 197 DSRWKKLRFLID-----KELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 197 ~~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..-++++..||. ...-+.++..|.|++|.||||.++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 455677778877 333467899999999999999999887744
No 420
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.26 E-value=0.21 Score=56.69 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=27.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
.+++.+.|.||+||||+|.+.+-+.......+..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999887776666443333
No 421
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.24 E-value=0.11 Score=53.55 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=29.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh-cccCccEEEEeehhhhc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA-HEFEGSSFLANVREISE 256 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~ 256 (1214)
..++.+.|+.|+|||.||+++++.+. ......+ ..+..+...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~-~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLI-RIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE-EEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchH-HHhhhcccc
Confidence 45788999999999999999999776 4433333 334444443
No 422
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.23 E-value=0.56 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|.|..|.|||||++.++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 423
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.22 E-value=0.55 Score=50.08 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVY 235 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~ 235 (1214)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 424
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.21 E-value=0.62 Score=53.63 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=23.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh--cccCccEEEE
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA--HEFEGSSFLA 249 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 249 (1214)
.++|.++|+.|+||||-..+++.++. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999985555554443 3333344443
No 425
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.20 E-value=2 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999987664
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.14 E-value=0.12 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
++|.+.|++|.||||+|+++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987654
No 427
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.13 E-value=0.36 Score=53.72 Aligned_cols=46 Identities=24% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 204 RFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 204 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.+++..+-+.-+++.|+|.+|.|||++|.++..+.......++|+.
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3444444456789999999999999999999988777778888876
No 428
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.13 E-value=0.27 Score=54.79 Aligned_cols=55 Identities=27% Similarity=0.262 Sum_probs=42.1
Q ss_pred cccCcccchhhHHH---HHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC
Q 000943 189 IFKDLVGIDSRWKK---LRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE 243 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 243 (1214)
..+.+||..+..+. +.++...+.-.-+.|.|.|++|.|||+||..+++.+...-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 45789997766543 45555555456789999999999999999999998875533
No 429
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.12 E-value=0.2 Score=53.20 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999998775443334554
No 430
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.11 E-value=0.32 Score=55.05 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=43.2
Q ss_pred ccCcccchhhHHHHHHHHhhhc----CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKEL----NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+.|+|+++.++++.+.+.... ..-+++.+.|+.|.||||||..+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 3589999999999999887432 346899999999999999999987766544
No 431
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.02 E-value=0.59 Score=51.47 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 432
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.01 E-value=0.1 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999988765
No 433
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=91.97 E-value=0.34 Score=54.74 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|...|. .+-+..+++-|+|+.|+||||||..+....+..-..++|+.
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 34555554 22234689999999999999999998887766656677776
No 434
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.97 E-value=0.28 Score=55.64 Aligned_cols=56 Identities=27% Similarity=0.251 Sum_probs=38.4
Q ss_pred cccCcccchhhHHHH---HHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCc
Q 000943 189 IFKDLVGIDSRWKKL---RFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEG 244 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 244 (1214)
....+||..+..+.. .++...+.-.-+.|.+.|++|.|||+||.++++.+....+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 356899987766653 44444443356899999999999999999999988866553
No 435
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.57 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
...+++|.|..|.|||||++.++..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999763
No 436
>PRK14528 adenylate kinase; Provisional
Probab=91.90 E-value=0.67 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+.|.|.|++|.||||+|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999987765
No 437
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.89 E-value=0.23 Score=55.19 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
....++.|.|.+|.|||++|.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999999999999999998765444445666765
No 438
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.87 E-value=1.1 Score=51.28 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444333333567899999999999999999988877654
No 439
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=1.3 Score=53.56 Aligned_cols=173 Identities=18% Similarity=0.208 Sum_probs=93.8
Q ss_pred cCcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..+-|-...+..+..+.. .+-...+-+..+|++|.|||-+|++|+++.. ..+|..+..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe------ 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE------ 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH------
Confidence 345566666666665543 1123467889999999999999999998765 3334443322
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCC-cEEEEEeCCCCHH------------HHHHHhcccCCCCCCcE
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYR-RVLLIIDDAFDLK------------QLESLAGEREWFGPGSR 326 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~------------~l~~l~~~~~~~~~gs~ 326 (1214)
+++...++ ........+.+....+ +-.|.+|+++..- ...++....++.++.++
T Consensus 254 -------li~k~~gE------te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~ 320 (693)
T KOG0730|consen 254 -------LISKFPGE------TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAK 320 (693)
T ss_pred -------HHHhcccc------hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCc
Confidence 22221221 1122234445555666 8888888876321 12233333333343333
Q ss_pred --EEEEeCCcchhhh-c---CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 327 --IIITSRDEHLLTT-Y---GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 327 --IIiTTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
||-|||.+.-+.. . ..++.+++.-.+..+-.+.+....-...... ......++..+.|.-
T Consensus 321 vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~---~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLS---DVDLEDIAVSTHGYV 386 (693)
T ss_pred EEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcc---hhhHHHHHHHccchh
Confidence 3445555433222 1 2345677777787777777777654433331 122344555565553
No 440
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=2.5 Score=46.06 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=36.3
Q ss_pred cCcccchhhHHHHHHHHh----------hhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLID----------KELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+..|.+...+.|.+..- ......+-|.++|++|.||+-||++|+-..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 456788888777776532 222346889999999999999999998754
No 441
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=91.78 E-value=1.5 Score=50.11 Aligned_cols=54 Identities=22% Similarity=0.127 Sum_probs=34.9
Q ss_pred ceeecCCCCHHHHHHHHHHhhh----cCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhC
Q 000943 344 EVLKLKELHDDEALQLFCKKAF----KTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLC 400 (1214)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~----~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~ 400 (1214)
.+++++..+.+|+.++..-+.- ....+. ++.-+++.-..+|+|--++.++.+++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~r 461 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFLR 461 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhcC
Confidence 4688899999998887655431 111111 33445677778999977777766553
No 442
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.77 E-value=0.45 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 000943 217 IGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 443
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.77 E-value=0.72 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|.|..|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999999885
No 444
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.76 E-value=0.48 Score=50.60 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCcEEEEEeCC----C--CHHHHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeecC
Q 000943 286 LKMIGTRLRYRRVLLIIDDA----F--DLKQLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKLK 349 (1214)
Q Consensus 286 ~~~l~~~L~~kr~LlVLDdv----~--~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~ 349 (1214)
.-.+.+.|...+-+|+.|.= + +.+.+-.+..... ...|..||+.|-+..++.. .++++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 34577788889999999953 2 3334444443321 1347789999999988875 34555543
No 445
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=91.70 E-value=0.14 Score=53.37 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=23.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999988775
No 446
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.69 E-value=0.31 Score=49.15 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
+...+|-+.|.+|.||||+|.++++++..+.-. +++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~-~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYH-VYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCe-EEEe
Confidence 456799999999999999999999988766433 3443
No 447
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.67 E-value=1.1 Score=49.28 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
....++.|.|.+|.|||++|.+++...... -..++|+. -.....++...++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 445789999999999999999887755444 33455554 233455566665544
No 448
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.67 E-value=0.11 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.769 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 449
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.66 E-value=0.43 Score=56.52 Aligned_cols=93 Identities=25% Similarity=0.220 Sum_probs=51.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCC------CCCcccccc---
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLP------DSGIWDVYD--- 284 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~------~~~~~~~~~--- 284 (1214)
-+.++|.|.+|+|||||+..++..........+.+.-+.+ +...+.++.++++..-.... ..+.+....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4678999999999999999988766544343333333322 22344455555543211000 000000000
Q ss_pred --hHHHHHHHh---CCCcEEEEEeCCCCH
Q 000943 285 --GLKMIGTRL---RYRRVLLIIDDAFDL 308 (1214)
Q Consensus 285 --~~~~l~~~L---~~kr~LlVLDdv~~~ 308 (1214)
..-.+.+++ +++.+||++||+...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 012234444 679999999998754
No 450
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.66 E-value=0.21 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+-|.++|+.|+|||++++...+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 3567899999999999999877643
No 451
>PRK05439 pantothenate kinase; Provisional
Probab=91.64 E-value=0.23 Score=56.05 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999998886654
No 452
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.62 E-value=0.74 Score=48.17 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....+|.|.|.+|.||||+|+.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999987653
No 453
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.24 Score=52.07 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=38.2
Q ss_pred cCcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 191 KDLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
.+.=|.+-..+++.+... .+-+..|-|.++|++|.|||.||++|++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345567777777776553 1234578899999999999999999988555444
No 454
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.58 E-value=0.14 Score=52.50 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.57 E-value=0.19 Score=51.14 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=62.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL 293 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L 293 (1214)
-.+++|.|..|.|||||++.++..+. ...+.+++... .... ...... ...+.-... ...-....-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~~----~~~i~~~~q--lS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEEL----RRRIGYVPQ--LSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHHH----HhceEEEee--CCHHHHHHHHHHHHH
Confidence 36899999999999999999876443 23445554321 1100 001111 111000000 111111223355556
Q ss_pred CCCcEEEEEeCCCC---HH---HHHHHhcccCCCCCCcEEEEEeCCcchhhhcCccceeec
Q 000943 294 RYRRVLLIIDDAFD---LK---QLESLAGEREWFGPGSRIIITSRDEHLLTTYGVDEVLKL 348 (1214)
Q Consensus 294 ~~kr~LlVLDdv~~---~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 348 (1214)
...+-++++|+... .. .+..+..... ..+..+|++|.+...+... .++++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 66788999998762 22 2333332221 2356788888887665543 2344444
No 456
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.56 E-value=0.37 Score=55.35 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..|.++|..+-....++-|+|.+|+|||+|+..++-
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 345555654444568888999999999999988764
No 457
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.55 E-value=1.9 Score=51.71 Aligned_cols=73 Identities=27% Similarity=0.254 Sum_probs=45.6
Q ss_pred cccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh-cccCccEEEEeehhhhccCCHHHHHHHHHHhh
Q 000943 193 LVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA-HEFEGSSFLANVREISEKGGLISLQKQLLSQL 271 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 271 (1214)
..|...-+..|.+++. +-....++.|-|.+|+|||++|..++.... .+-..++|+. -.....++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 3444444555555554 334456889999999999999999986554 2223344443 2345566667766654
Q ss_pred h
Q 000943 272 L 272 (1214)
Q Consensus 272 l 272 (1214)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 458
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=1.4 Score=53.62 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=90.0
Q ss_pred cCcccchhhHHHHHHHHhhhc-----------CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDKEL-----------NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++-|+.+..+.+.+.+.-.. .-..-|.++|++|.|||-||-+++....-+ |+. +.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ecC------
Confidence 345566666666666554111 112348899999999999999987643322 232 211
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHH-HHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCC--CC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIG-TRLRYRRVLLIIDDAFDLK-------------QLESLAGEREWF--GP 323 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~ 323 (1214)
. +++.+-++.. ++.+..+- +.-.-|++.+.+|.+++.. -+.+++..++-. -.
T Consensus 735 -P----ElL~KyIGaS-------Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 735 -P----ELLSKYIGAS-------EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred -H----HHHHHHhccc-------HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc
Confidence 1 2333323321 12233333 3334699999999988531 245555544311 13
Q ss_pred CcEEEE-EeCCcchhhhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 324 GSRIII-TSRDEHLLTTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 324 gs~IIi-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
|--|+- |||..-+-+++ +.++.+.-+.-++.|-++.|...+-....+. ....+.++.++.|.--|
T Consensus 803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 555554 44543222221 2344444555667777777766542211111 11234566666666543
No 459
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.50 E-value=0.7 Score=49.73 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
...+++|.|..|.|||||++.++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 346899999999999999999975
No 460
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.48 E-value=0.23 Score=53.13 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEee
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANV 251 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 251 (1214)
+....|.++||+|.||||..+.++..+..++.. .++.|+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 346678899999999999999998877666543 344444
No 461
>COG4240 Predicted kinase [General function prediction only]
Probab=91.45 E-value=0.75 Score=48.12 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=48.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhccc-CccEEEEeehhhhccCCHHHHHHHHHHh----hhcCCCCCcccccchH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEF-EGSSFLANVREISEKGGLISLQKQLLSQ----LLKLPDSGIWDVYDGL 286 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~----ll~~~~~~~~~~~~~~ 286 (1214)
+..-+++|.|+-|.||||++..++..+.++. +...... +.... -...-+..++++ +....-....+..-+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlY---lthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLY---LTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhh---cchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 4578999999999999999999999777766 3333332 21111 112222233333 1223334445555566
Q ss_pred HHHHHHhCCCc
Q 000943 287 KMIGTRLRYRR 297 (1214)
Q Consensus 287 ~~l~~~L~~kr 297 (1214)
+.+....+++.
T Consensus 124 nVLnai~~g~~ 134 (300)
T COG4240 124 NVLNAIARGGP 134 (300)
T ss_pred HHHHHHhcCCC
Confidence 66666666653
No 462
>PRK06217 hypothetical protein; Validated
Probab=91.44 E-value=0.14 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.|.|.+|.||||+|+++.+++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998663
No 463
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.38 Score=50.67 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCH---HHHHHH---hcccCCCCCCcEEEEEeCCcchhhhcCcccee
Q 000943 286 LKMIGTRLRYRRVLLIIDDAFDL---KQLESL---AGEREWFGPGSRIIITSRDEHLLTTYGVDEVL 346 (1214)
Q Consensus 286 ~~~l~~~L~~kr~LlVLDdv~~~---~~l~~l---~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~ 346 (1214)
...+.+.+--++-+.|||.-++- +.++.+ ...+. .+|+.++|.|-.+.++.....+.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 35566666678889999987743 222222 22222 4577788888778887776655444
No 464
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.43 E-value=0.24 Score=49.25 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEE
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLA 249 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 249 (1214)
++|.|+|..|+|||||++.+.+.+.++ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999988654 43333433
No 465
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=1.8 Score=55.12 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=65.8
Q ss_pred ccCcccchhhHHHHHHHHhhhc----C--CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKEL----N--GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~----~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.+..+|-++.+..|.+.+.... + ..-...+.|+.|+|||.||++++..+.+..+..+-+. .+++
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~--------- 630 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEF--------- 630 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhh---------
Confidence 3568888888888888876321 1 3556789999999999999999998765555444443 2222
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcE-EEEEeCCCCHH
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRV-LLIIDDAFDLK 309 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 309 (1214)
+. ...+.+.+. .. --.+....+.+.++.+++ +|.||||+..+
T Consensus 631 ~e--vskligsp~-gy-vG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPP-GY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCc-cc-ccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 11 223222211 11 011223466777777775 66679998653
No 466
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.37 E-value=0.16 Score=50.41 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+|.|.|++|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999988664
No 467
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.36 E-value=0.1 Score=33.57 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=11.9
Q ss_pred ceEEEeeCccCcccCcccC
Q 000943 724 LLELFLDGTAIEELPSSIQ 742 (1214)
Q Consensus 724 L~~L~L~~~~i~~lp~~i~ 742 (1214)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666665544
No 468
>PRK13949 shikimate kinase; Provisional
Probab=91.36 E-value=0.15 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.|+|++|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988764
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.32 E-value=0.14 Score=54.43 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|+|.|..|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 470
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.32 E-value=0.68 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
...+++|.|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999998764
No 471
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.2 Score=53.95 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=40.7
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..+.=|-++.+++|.+.... +-..++-|.++|.+|.|||-||++|+++.+..|
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 45566789999998877641 112356678999999999999999999776655
No 472
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.27 E-value=0.15 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+|.|.|.+|.||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 473
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.22 E-value=0.52 Score=59.31 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
....++|+|..|.|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999865
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.21 E-value=0.44 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|.|+-|.|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999975
No 475
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.18 E-value=0.55 Score=59.12 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.-..++|+|..|.|||||++.+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987644
No 476
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.17 E-value=0.91 Score=48.16 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
++++|.|+.|.|||||++.+...+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987533
No 477
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.16 E-value=0.17 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 478
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.16 E-value=0.16 Score=52.86 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+++|.|+.|+||||+|+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999887653
No 479
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.14 E-value=1.4 Score=46.97 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|.|..|.|||||++.++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 480
>PRK13948 shikimate kinase; Provisional
Probab=91.13 E-value=0.17 Score=52.63 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
..+.|.++|+.|.||||+++.+++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578899999999999999999887643
No 481
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.07 E-value=0.64 Score=53.10 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..+..+|..+-....++.|+|.+|+|||+||..++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 455566654445578999999999999999998875
No 482
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.07 E-value=1.1 Score=47.12 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc---cC-ccEEEEee-hhhhcc-CCHHHHHHHHHHhhhcCCCCCcccccchH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE---FE-GSSFLANV-REISEK-GGLISLQKQLLSQLLKLPDSGIWDVYDGL 286 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~-~~~~~~~~-~~~~~~-~~~~~l~~~ll~~ll~~~~~~~~~~~~~~ 286 (1214)
+..-..|.|++|+|||||.+.+++-++.. |. ..+-+.+- .+.... .+..+. ++... ... ...-....
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R-~dV----ld~cpk~~ 208 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRR-MDV----LDPCPKAE 208 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhh-hhh----cccchHHH
Confidence 34457799999999999999999866543 32 22222221 111110 111111 11111 000 00011112
Q ss_pred HHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCC
Q 000943 287 KMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRD 333 (1214)
Q Consensus 287 ~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~ 333 (1214)
-++...-.-.+=++|+|.+-..++..++.... ..|-++|.|..-
T Consensus 209 gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 209 GMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 22222223467899999999888766665553 467787766643
No 483
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.04 E-value=0.46 Score=55.92 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=32.9
Q ss_pred HHHHHhCCCcEEEEEeCCCC---HHH---HHHHhcccCCCCCCcEEEEEeCCcchhhhcCc
Q 000943 288 MIGTRLRYRRVLLIIDDAFD---LKQ---LESLAGEREWFGPGSRIIITSRDEHLLTTYGV 342 (1214)
Q Consensus 288 ~l~~~L~~kr~LlVLDdv~~---~~~---l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~ 342 (1214)
++.+.|-.++-|+.||+=-+ .+. ++.++... ..+ .++|++|++..++.+.+
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCc-eEEEEecchhhhhhHhh
Confidence 34555567899999998653 333 33344332 222 68999999988877643
No 484
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.01 E-value=0.88 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|.|+|++|.||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 485
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.00 E-value=0.41 Score=55.54 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCc---cEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEG---SSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIG 290 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~ 290 (1214)
...|.|+|+.|.||||+++++.+.+....+. .+.+.+..+... .+.... .....+ .. ...+...-...++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~-~~~~~~-~~~v~Q----~~-v~~~~~~~~~~l~ 206 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY-DEIETI-SASVCQ----SE-IPRHLNNFAAGVR 206 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec-cccccc-cceeee----ee-ccccccCHHHHHH
Confidence 4789999999999999999998877544332 222221111100 000000 000000 00 0011223456677
Q ss_pred HHhCCCcEEEEEeCCCCHHHHHHHhc
Q 000943 291 TRLRYRRVLLIIDDAFDLKQLESLAG 316 (1214)
Q Consensus 291 ~~L~~kr~LlVLDdv~~~~~l~~l~~ 316 (1214)
..|+..+-.+++..+.+.+..+....
T Consensus 207 ~aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 207 NALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HHhccCCCEEeeeeeCCHHHHHHHHH
Confidence 88889999999999999888764443
No 486
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.98 E-value=0.77 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHHHHH
Q 000943 217 IGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999987754
No 487
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.94 E-value=0.5 Score=56.68 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=50.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc-CccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccc----cchHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF-EGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDV----YDGLKM 288 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~----~~~~~~ 288 (1214)
-..++|+|.+|.|||||++.+++.+.... +..+++.-+.+- ...+..+.+.+-..++.......... ....-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER--peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER--PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc--hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999775433 344444444332 12223332222111111111111111 111112
Q ss_pred HHHHh--CCCcEEEEEeCCCCHHH
Q 000943 289 IGTRL--RYRRVLLIIDDAFDLKQ 310 (1214)
Q Consensus 289 l~~~L--~~kr~LlVLDdv~~~~~ 310 (1214)
+.+++ .++.+||++|++.....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHHH
Confidence 33333 57999999999876544
No 488
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=90.91 E-value=0.39 Score=52.58 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE 243 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 243 (1214)
.++...+........+|||.|.||+|||||.-++...+..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3455555555567889999999999999999998887755543
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.90 E-value=0.14 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.|+|+|+.|+|||||++.+++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765433
No 490
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=90.90 E-value=0.23 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|.|.+|.|||+|+..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEcCcccccchhhHHHHhccc
Confidence 5688999999999999999988664
No 491
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=90.89 E-value=0.25 Score=50.66 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+++|+|..|.|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999877653
No 492
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=90.87 E-value=0.28 Score=55.76 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=25.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
|++.+.|-||+||||+|.+.+-....+-..+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6789999999999999988887666553333333
No 493
>PRK15453 phosphoribulokinase; Provisional
Probab=90.82 E-value=0.32 Score=53.53 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....+|+|.|.+|.||||+|+++.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999876654
No 494
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=90.75 E-value=0.58 Score=55.68 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=49.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc-CccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC---Ccccccch----
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF-EGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS---GIWDVYDG---- 285 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~---~~~~~~~~---- 285 (1214)
-+.++|.|.+|+|||||+..+++....+. +.++|. -+.+ +...+.++..++...-...... ...+....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 46789999999999999999888665433 333443 2322 2233444444444321000000 00111101
Q ss_pred ----HHHHHHHh---CCCcEEEEEeCCCCH
Q 000943 286 ----LKMIGTRL---RYRRVLLIIDDAFDL 308 (1214)
Q Consensus 286 ----~~~l~~~L---~~kr~LlVLDdv~~~ 308 (1214)
.-.+.+++ .++.+|+++||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 12233443 379999999999654
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.74 E-value=0.61 Score=54.15 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
.++=+-|||..|.|||.|.-.+|+.+...-..++.+. .-+.++.+.+-.. . .....+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~~-~--------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQL-R--------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHHH-h--------CCCccHHHHHHH
Confidence 4677889999999999999999986543211121111 0112222222221 1 112235566677
Q ss_pred hCCCcEEEEEeCCC--CHH---HHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 293 LRYRRVLLIIDDAF--DLK---QLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 293 L~~kr~LlVLDdv~--~~~---~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
+.++..||.+|.+. +.. -+..|...+- ..|. |||+|.+.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 77888899999754 333 3455544432 3455 55555553
No 496
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.73 E-value=1.1 Score=50.14 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.-.+++|+|..|.|||||++.++..+
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 34689999999999999999998654
No 497
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=90.73 E-value=0.72 Score=59.11 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.5
Q ss_pred ccccHHHHHHHHHHhCCCceEecCcc
Q 000943 25 TRKNFTDHLCAALDQKGIIVFRDDKE 50 (1214)
Q Consensus 25 ~~~~f~~~l~~~L~~~g~~~~~d~~~ 50 (1214)
.|+.|+++.-.+|+++|+..=+|.+.
T Consensus 176 ~R~~wa~~~N~~l~~~g~~~rid~rS 201 (744)
T TIGR02768 176 WREQWAELANEHLAEAGLDLRIDHRS 201 (744)
T ss_pred HHHHHHHHHHHHHHHcCCCceEcccc
Confidence 47899999999999999999999873
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.73 E-value=1.3 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++|+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999998887653
No 499
>PRK13946 shikimate kinase; Provisional
Probab=90.70 E-value=0.18 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+.|.+.|++|.||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998773
No 500
>PTZ00035 Rad51 protein; Provisional
Probab=90.67 E-value=0.72 Score=53.17 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..|.++|..+-....++.|+|.+|.|||||+..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 45556665444567899999999999999998887543
Done!