Query 000943
Match_columns 1214
No_of_seqs 895 out of 5974
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 02:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.9E-47 6.6E-52 384.2 13.0 172 9-187 4-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.3E-46 4.5E-51 383.0 12.0 170 8-183 30-201 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 3.5E-38 1.2E-42 387.9 25.1 301 194-506 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-33 1.2E-37 380.0 24.5 308 186-505 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 8.7E-33 3E-37 341.1 18.1 281 191-498 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-31 4.1E-36 334.8 22.7 302 187-501 120-448 (591)
7 3rgz_A Protein brassinosteroid 100.0 2.1E-31 7.2E-36 342.3 22.6 383 555-938 240-723 (768)
8 3rgz_A Protein brassinosteroid 100.0 1.9E-30 6.5E-35 333.4 26.1 355 558-914 174-554 (768)
9 3t6q_A CD180 antigen; protein- 100.0 1.1E-29 3.7E-34 318.5 31.9 391 553-945 48-526 (606)
10 4eco_A Uncharacterized protein 100.0 4.8E-30 1.6E-34 322.2 25.3 330 593-930 193-598 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 3.5E-30 1.2E-34 328.5 24.0 329 593-930 435-838 (876)
12 4eco_A Uncharacterized protein 100.0 8.3E-30 2.8E-34 320.0 21.1 318 614-939 192-585 (636)
13 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-28 9.6E-33 305.7 30.0 380 553-940 47-518 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 2.2E-28 7.5E-33 312.0 27.2 324 607-939 425-825 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-28 1.7E-32 303.4 27.7 381 553-942 71-543 (606)
16 3t6q_A CD180 antigen; protein- 100.0 1.4E-27 4.9E-32 299.3 31.0 370 555-943 98-547 (606)
17 2z63_A TOLL-like receptor 4, v 100.0 5.6E-28 1.9E-32 300.7 26.6 372 553-930 43-505 (570)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-27 4.1E-32 310.6 27.7 385 554-944 40-551 (844)
19 3h16_A TIR protein; bacteria T 100.0 7.8E-30 2.7E-34 257.1 5.3 122 9-133 16-137 (154)
20 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-27 2.2E-31 287.7 27.4 355 562-929 21-478 (520)
21 2z81_A CD282 antigen, TOLL-lik 99.9 6.5E-27 2.2E-31 289.6 25.4 174 562-737 26-211 (549)
22 1ziw_A TOLL-like receptor 3; i 99.9 6.4E-26 2.2E-30 288.3 34.3 380 553-936 40-496 (680)
23 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-26 4.4E-31 300.9 27.6 377 553-932 64-560 (844)
24 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-27 1.5E-31 291.2 22.1 349 554-930 42-484 (549)
25 3v47_A TOLL-like receptor 5B a 99.9 1.4E-26 4.9E-31 279.5 25.3 339 581-936 28-412 (455)
26 4fmz_A Internalin; leucine ric 99.9 2E-26 6.8E-31 267.7 25.5 295 585-908 46-343 (347)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-25 4.5E-30 285.4 32.6 382 553-937 64-553 (680)
28 1o6v_A Internalin A; bacterial 99.9 6.1E-26 2.1E-30 274.6 27.9 336 561-930 45-386 (466)
29 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-26 4.3E-31 285.0 21.8 333 553-909 36-479 (520)
30 1o6v_A Internalin A; bacterial 99.9 8.5E-26 2.9E-30 273.3 28.5 318 584-935 47-369 (466)
31 2z63_A TOLL-like receptor 4, v 99.9 5.9E-26 2E-30 282.4 26.6 377 562-945 28-496 (570)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4E-30 279.0 28.9 147 766-930 350-508 (562)
33 4fmz_A Internalin; leucine ric 99.9 1.5E-25 5.3E-30 260.2 25.1 297 603-930 42-344 (347)
34 2id5_A Lingo-1, leucine rich r 99.9 2.1E-25 7.1E-30 271.0 26.7 305 587-909 15-331 (477)
35 1jl5_A Outer protein YOPM; leu 99.9 6.4E-25 2.2E-29 263.5 29.7 332 555-923 27-381 (454)
36 1jl5_A Outer protein YOPM; leu 99.9 5.8E-25 2E-29 263.9 28.9 339 564-936 73-433 (454)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.1E-25 3.1E-29 270.9 30.2 360 561-945 30-499 (562)
38 3o6n_A APL1; leucine-rich repe 99.9 6.5E-25 2.2E-29 259.3 25.1 302 602-930 42-350 (390)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-24 1.2E-28 257.3 31.1 303 557-908 37-349 (457)
40 3v47_A TOLL-like receptor 5B a 99.9 1.3E-24 4.3E-29 262.4 26.2 331 586-937 13-388 (455)
41 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.9E-29 271.7 25.1 300 603-930 49-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.9 2.6E-24 9E-29 261.3 27.1 306 566-888 15-333 (477)
43 3o6n_A APL1; leucine-rich repe 99.9 1.3E-23 4.4E-28 248.1 24.1 293 585-909 47-350 (390)
44 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-23 2.1E-27 246.5 29.5 334 557-937 59-392 (457)
45 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-23 8.1E-28 262.2 27.1 375 563-941 53-564 (635)
46 3oja_B Anopheles plasmodium-re 99.9 2.9E-23 9.8E-28 259.0 24.0 293 585-909 53-356 (597)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-22 4.7E-27 255.3 27.8 373 553-930 67-578 (635)
48 1xku_A Decorin; proteoglycan, 99.9 3.3E-22 1.1E-26 230.4 26.1 281 584-908 32-329 (330)
49 3ub2_A TOLL/interleukin-1 rece 99.9 9.7E-25 3.3E-29 216.0 3.1 136 7-149 4-145 (146)
50 2ft3_A Biglycan; proteoglycan, 99.9 7E-22 2.4E-26 227.8 24.5 62 846-909 237-305 (332)
51 2ft3_A Biglycan; proteoglycan, 99.9 5.8E-22 2E-26 228.5 22.8 280 584-909 34-331 (332)
52 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-23 1.2E-27 236.5 10.8 249 629-914 51-307 (313)
53 4fcg_A Uncharacterized protein 99.9 3E-22 1E-26 230.1 18.7 173 606-780 82-264 (328)
54 1xku_A Decorin; proteoglycan, 99.9 2.5E-21 8.6E-26 223.0 26.3 283 604-929 30-329 (330)
55 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 221.8 19.5 221 626-907 79-310 (328)
56 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-20 7.7E-25 230.8 28.5 254 585-909 42-295 (622)
57 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-20 7.5E-25 230.9 27.9 262 605-939 40-304 (622)
58 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-21 4.1E-26 223.6 13.3 250 651-936 50-308 (313)
59 2z80_A TOLL-like receptor 2, v 99.8 5E-21 1.7E-25 222.6 16.0 266 587-909 35-312 (353)
60 2z66_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 208.7 17.6 166 587-755 11-185 (306)
61 3zyj_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 213.8 23.7 192 585-780 45-242 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 214.3 23.9 192 585-780 56-253 (452)
63 1z7x_W Ribonuclease inhibitor; 99.8 8.7E-23 3E-27 246.7 -8.5 333 584-930 4-409 (461)
64 3zyj_A Leucine-rich repeat-con 99.8 7.6E-19 2.6E-23 210.6 23.5 240 630-909 45-290 (440)
65 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-19 5.3E-24 203.3 16.3 192 586-778 14-210 (285)
66 2z80_A TOLL-like receptor 2, v 99.8 1.6E-19 5.5E-24 209.9 16.3 273 563-868 32-318 (353)
67 2js7_A Myeloid differentiation 99.8 7.2E-21 2.5E-25 191.5 4.1 101 10-114 13-117 (160)
68 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 203.3 17.5 219 566-785 11-239 (306)
69 3zyi_A Leucine-rich repeat-con 99.8 1.7E-18 5.7E-23 208.4 22.9 238 565-823 57-302 (452)
70 1wwl_A Monocyte differentiatio 99.8 2.3E-20 7.8E-25 213.0 6.2 194 697-909 94-307 (312)
71 1z7x_W Ribonuclease inhibitor; 99.8 6.4E-22 2.2E-26 239.1 -7.9 345 557-930 23-438 (461)
72 1ozn_A Reticulon 4 receptor; N 99.8 6.5E-19 2.2E-23 198.2 17.2 221 565-786 14-242 (285)
73 2j67_A TOLL like receptor 10; 99.8 1.7E-20 5.7E-25 191.8 3.7 101 8-112 30-134 (178)
74 1fyx_A TOLL-like receptor 2; b 99.8 7.1E-21 2.4E-25 189.8 0.7 102 10-115 2-108 (149)
75 1t3g_A X-linked interleukin-1 99.8 4.3E-20 1.5E-24 185.6 6.4 102 12-115 1-115 (159)
76 3o53_A Protein LRIM1, AGAP0063 99.8 2.1E-20 7.1E-25 213.9 3.7 258 610-914 15-278 (317)
77 3o53_A Protein LRIM1, AGAP0063 99.8 2E-20 6.9E-25 213.9 1.6 262 630-936 12-279 (317)
78 3oja_A Leucine-rich immune mol 99.8 2.3E-18 7.9E-23 208.5 14.5 215 626-909 32-248 (487)
79 3ogk_B Coronatine-insensitive 99.7 1.6E-20 5.4E-25 234.5 -6.1 361 557-930 107-524 (592)
80 1wwl_A Monocyte differentiatio 99.7 7.9E-19 2.7E-23 200.2 7.9 201 649-888 93-309 (312)
81 3oja_A Leucine-rich immune mol 99.7 9.5E-19 3.3E-23 211.9 7.5 233 604-906 33-270 (487)
82 3ogk_B Coronatine-insensitive 99.7 4E-19 1.4E-23 221.8 -1.3 309 584-909 165-524 (592)
83 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 178.6 18.7 211 574-784 19-239 (276)
84 2xwt_C Thyrotropin receptor; s 99.7 9E-17 3.1E-21 175.6 17.1 152 697-910 79-238 (239)
85 2p1m_B Transport inhibitor res 99.7 1.8E-19 6.2E-24 225.0 -5.3 125 584-708 106-245 (594)
86 1p9a_G Platelet glycoprotein I 99.7 7.1E-16 2.4E-20 173.5 21.1 197 673-909 8-206 (290)
87 2qen_A Walker-type ATPase; unk 99.7 9.4E-16 3.2E-20 177.7 22.7 295 182-499 3-349 (350)
88 2o6q_A Variable lymphocyte rec 99.7 8.7E-16 3E-20 171.1 21.4 194 585-781 18-217 (270)
89 2p1m_B Transport inhibitor res 99.7 4E-19 1.4E-23 221.9 -6.5 360 556-931 99-518 (594)
90 2z62_A TOLL-like receptor 4, v 99.7 2.6E-16 8.8E-21 176.0 17.0 148 587-736 11-163 (276)
91 4ay9_X Follicle-stimulating ho 99.7 3.9E-16 1.3E-20 180.9 17.9 193 586-780 12-213 (350)
92 1h6u_A Internalin H; cell adhe 99.7 4.7E-16 1.6E-20 176.8 18.1 192 671-909 37-228 (308)
93 3rfs_A Internalin B, repeat mo 99.7 2.1E-16 7.2E-21 176.3 14.0 170 605-779 19-191 (272)
94 1p9a_G Platelet glycoprotein I 99.7 6.9E-16 2.4E-20 173.6 18.1 194 584-782 11-208 (290)
95 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.3E-22 191.6 4.6 153 628-780 70-233 (336)
96 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.2E-21 175.4 14.0 200 605-810 41-245 (272)
97 2o6q_A Variable lymphocyte rec 99.7 1.9E-15 6.6E-20 168.3 20.3 194 562-757 16-217 (270)
98 4glp_A Monocyte differentiatio 99.7 2.7E-16 9.2E-21 179.1 13.2 197 696-909 89-305 (310)
99 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4.2E-20 173.3 17.4 188 584-781 42-229 (308)
100 2fna_A Conserved hypothetical 99.6 3.2E-15 1.1E-19 173.6 21.3 294 183-498 5-356 (357)
101 2ast_B S-phase kinase-associat 99.6 2.6E-17 8.7E-22 189.8 2.1 176 605-780 70-258 (336)
102 2xwt_C Thyrotropin receptor; s 99.6 9.4E-16 3.2E-20 167.5 13.8 203 595-821 23-236 (239)
103 4ay9_X Follicle-stimulating ho 99.6 3.7E-15 1.3E-19 172.7 18.6 233 631-928 12-255 (350)
104 2ca6_A RAN GTPase-activating p 99.6 5E-17 1.7E-21 191.3 -1.5 256 609-909 13-314 (386)
105 2ca6_A RAN GTPase-activating p 99.6 6.9E-17 2.4E-21 190.1 -1.6 188 596-783 22-258 (386)
106 4glp_A Monocyte differentiatio 99.6 3.2E-15 1.1E-19 170.1 11.2 199 628-864 91-308 (310)
107 3m19_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 156.5 18.7 173 585-782 16-192 (251)
108 3cvr_A Invasion plasmid antige 99.6 5.7E-15 1.9E-19 180.3 13.7 180 563-785 60-246 (571)
109 1w5s_A Origin recognition comp 99.6 1E-13 3.4E-18 164.5 21.9 285 189-483 20-371 (412)
110 3cvr_A Invasion plasmid antige 99.5 4.1E-14 1.4E-18 172.7 17.3 182 606-811 60-254 (571)
111 3m19_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 152.7 18.1 172 562-757 14-191 (251)
112 3goz_A Leucine-rich repeat-con 99.5 1.7E-15 6E-20 176.4 0.0 58 851-908 226-294 (362)
113 1h6t_A Internalin B; cell adhe 99.5 9.1E-14 3.1E-18 156.4 13.4 166 605-780 46-211 (291)
114 4ezg_A Putative uncharacterize 99.5 4.7E-14 1.6E-18 149.0 10.3 148 605-780 44-192 (197)
115 1m9s_A Internalin B; cell inva 99.5 8.5E-14 2.9E-18 171.9 12.0 168 604-781 42-209 (605)
116 2qby_B CDC6 homolog 3, cell di 99.5 8.3E-12 2.8E-16 146.5 27.5 277 190-483 19-339 (384)
117 1h6t_A Internalin B; cell adhe 99.5 2.7E-13 9.3E-18 152.5 14.2 167 584-758 47-213 (291)
118 1m9s_A Internalin B; cell inva 99.4 2.9E-13 1E-17 167.0 14.8 168 584-759 44-211 (605)
119 1dce_A Protein (RAB geranylger 99.4 3E-15 1E-19 183.7 -3.6 204 647-905 345-567 (567)
120 1xeu_A Internalin C; cellular 99.4 3.1E-13 1.1E-17 149.6 12.2 168 603-781 17-184 (263)
121 3goz_A Leucine-rich repeat-con 99.4 5.1E-15 1.7E-19 172.4 -2.7 67 789-864 226-298 (362)
122 2qby_A CDC6 homolog 1, cell di 99.4 5.9E-12 2E-16 147.6 21.3 284 189-483 18-348 (386)
123 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 139.3 13.4 173 587-768 11-188 (208)
124 2o6s_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 137.9 14.0 171 567-746 12-190 (208)
125 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.7E-17 138.4 11.7 149 584-735 45-194 (197)
126 1xeu_A Internalin C; cellular 99.4 4.7E-13 1.6E-17 148.1 8.7 167 696-909 17-183 (263)
127 2v1u_A Cell division control p 99.4 3.6E-11 1.2E-15 141.0 25.4 284 189-483 17-351 (387)
128 1dce_A Protein (RAB geranylger 99.4 1.4E-14 4.8E-19 177.8 -5.4 174 603-780 347-544 (567)
129 2v9t_B SLIT homolog 2 protein 99.3 6E-12 2.1E-16 135.2 14.4 125 629-754 33-161 (220)
130 1fnn_A CDC6P, cell division co 99.3 5E-11 1.7E-15 140.0 22.9 306 189-505 15-387 (389)
131 2v70_A SLIT-2, SLIT homolog 2 99.3 7.5E-12 2.6E-16 134.5 14.3 147 586-757 14-165 (220)
132 2xot_A Amphoterin-induced prot 99.3 3.3E-12 1.1E-16 148.4 11.4 170 586-780 21-200 (361)
133 3e6j_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 132.6 16.2 150 607-782 21-172 (229)
134 2v70_A SLIT-2, SLIT homolog 2 99.3 8.9E-12 3E-16 133.9 13.8 152 608-785 14-169 (220)
135 2xot_A Amphoterin-induced prot 99.3 5.7E-12 2E-16 146.4 12.1 172 565-756 21-200 (361)
136 2v9t_B SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 131.9 14.6 147 586-735 14-165 (220)
137 3e6j_A Variable lymphocyte rec 99.3 2.4E-11 8.3E-16 131.3 15.4 146 586-734 22-171 (229)
138 4b8c_D Glucose-repressible alc 99.3 8E-13 2.7E-17 167.4 2.8 116 647-765 220-336 (727)
139 4b8c_D Glucose-repressible alc 99.2 3.2E-12 1.1E-16 161.9 5.8 160 605-786 173-333 (727)
140 2ell_A Acidic leucine-rich nuc 99.2 1.7E-11 5.7E-16 125.7 9.5 126 606-756 25-158 (168)
141 2ell_A Acidic leucine-rich nuc 99.2 2.9E-11 9.9E-16 123.8 9.7 58 722-781 24-83 (168)
142 1njg_A DNA polymerase III subu 99.2 8.4E-10 2.9E-14 120.0 20.6 197 189-398 21-230 (250)
143 2je0_A Acidic leucine-rich nuc 99.1 4.6E-11 1.6E-15 119.7 7.1 60 848-907 86-149 (149)
144 2je0_A Acidic leucine-rich nuc 99.1 5.4E-11 1.8E-15 119.1 6.5 124 626-752 15-147 (149)
145 1w8a_A SLIT protein; signaling 99.1 9.4E-10 3.2E-14 115.2 13.5 129 654-786 11-143 (192)
146 2chg_A Replication factor C sm 99.0 3.7E-09 1.3E-13 113.2 18.3 185 189-395 15-203 (226)
147 1w8a_A SLIT protein; signaling 99.0 5.4E-10 1.8E-14 117.1 11.1 74 586-660 11-87 (192)
148 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.6E-14 114.1 12.8 119 586-707 13-135 (193)
149 3sb4_A Hypothetical leucine ri 99.0 5.7E-10 2E-14 127.7 10.5 235 561-823 48-309 (329)
150 1a9n_A U2A', U2A'; complex (nu 99.0 4.1E-10 1.4E-14 116.2 7.7 100 652-755 43-150 (176)
151 2wfh_A SLIT homolog 2 protein 99.0 2.8E-09 9.4E-14 111.7 13.9 105 676-781 32-138 (193)
152 1a9n_A U2A', U2A'; complex (nu 99.0 6.8E-10 2.3E-14 114.6 8.2 104 629-736 43-154 (176)
153 3sb4_A Hypothetical leucine ri 99.0 3.6E-10 1.2E-14 129.4 6.4 96 788-904 226-327 (329)
154 1sxj_B Activator 1 37 kDa subu 98.9 1.5E-08 5E-13 115.5 18.0 186 189-397 19-211 (323)
155 2o6r_A Variable lymphocyte rec 98.9 1.4E-08 5E-13 104.6 13.5 88 696-784 50-139 (177)
156 1ds9_A Outer arm dynein; leuci 98.8 3.8E-11 1.3E-15 126.6 -7.3 124 647-775 44-180 (198)
157 2o6r_A Variable lymphocyte rec 98.8 1.9E-08 6.7E-13 103.6 13.1 38 719-756 97-135 (177)
158 1ds9_A Outer arm dynein; leuci 98.8 9.2E-11 3.2E-15 123.7 -5.7 131 617-751 37-180 (198)
159 1iqp_A RFCS; clamp loader, ext 98.8 1.1E-07 3.7E-12 108.5 18.6 185 189-396 23-212 (327)
160 1hqc_A RUVB; extended AAA-ATPa 98.8 3.5E-07 1.2E-11 104.1 22.6 253 189-488 10-303 (324)
161 4fdw_A Leucine rich hypothetic 98.7 4.7E-07 1.6E-11 106.0 22.5 233 627-908 112-355 (401)
162 4fdw_A Leucine rich hypothetic 98.7 3.9E-07 1.3E-11 106.6 21.5 230 606-905 136-377 (401)
163 2r9u_A Variable lymphocyte rec 98.6 1E-07 3.4E-12 97.9 11.2 103 678-782 15-118 (174)
164 3g39_A Variable lymphocyte rec 98.6 1.2E-07 4.1E-12 97.0 11.1 103 678-782 12-115 (170)
165 3g39_A Variable lymphocyte rec 98.6 1.4E-07 4.8E-12 96.4 11.1 100 585-686 11-113 (170)
166 2r9u_A Variable lymphocyte rec 98.6 1.4E-07 4.7E-12 96.8 11.1 98 586-685 15-115 (174)
167 2chq_A Replication factor C sm 98.6 1.1E-06 3.8E-11 99.6 19.7 180 189-394 15-202 (319)
168 3pfi_A Holliday junction ATP-d 98.6 4.7E-06 1.6E-10 95.3 24.0 264 189-498 27-328 (338)
169 1jr3_A DNA polymerase III subu 98.6 9.7E-07 3.3E-11 102.6 17.7 194 190-396 15-221 (373)
170 4fs7_A Uncharacterized protein 98.5 3.1E-06 1.1E-10 99.1 19.7 77 846-935 293-371 (394)
171 4fs7_A Uncharacterized protein 98.5 5.9E-06 2E-10 96.7 21.7 98 806-935 292-393 (394)
172 3te6_A Regulatory protein SIR3 98.5 3.7E-06 1.3E-10 93.8 18.6 169 191-365 20-212 (318)
173 3d8b_A Fidgetin-like protein 1 98.3 1.5E-05 5.1E-10 91.7 20.4 203 164-397 62-296 (357)
174 1sxj_A Activator 1 95 kDa subu 98.3 4.1E-06 1.4E-10 101.4 16.4 191 189-396 37-253 (516)
175 1jbk_A CLPB protein; beta barr 98.3 1.2E-06 4E-11 91.0 10.0 49 190-240 21-69 (195)
176 3bos_A Putative DNA replicatio 98.3 1.8E-06 6.1E-11 93.4 11.5 173 189-395 26-216 (242)
177 2ifg_A High affinity nerve gro 98.3 1E-06 3.5E-11 101.3 9.8 62 718-781 52-115 (347)
178 3h4m_A Proteasome-activating n 98.3 1.1E-05 3.9E-10 89.7 17.8 180 188-394 14-229 (285)
179 1d2n_A N-ethylmaleimide-sensit 98.3 2.1E-05 7.3E-10 86.8 19.2 197 191-416 33-263 (272)
180 1sxj_D Activator 1 41 kDa subu 98.3 2E-05 6.8E-10 90.6 19.6 193 189-394 35-233 (353)
181 3un9_A NLR family member X1; l 98.3 5.1E-08 1.8E-12 113.0 -2.4 60 721-780 154-222 (372)
182 3un9_A NLR family member X1; l 98.3 1.2E-08 4E-13 118.4 -8.0 40 849-888 210-252 (372)
183 2ifg_A High affinity nerve gro 98.3 1.6E-06 5.6E-11 99.6 9.9 101 792-909 12-114 (347)
184 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.5E-05 8.6E-10 85.6 18.9 182 190-395 5-221 (262)
185 2ra8_A Uncharacterized protein 98.2 3.5E-07 1.2E-11 105.1 2.7 60 848-908 250-317 (362)
186 2z4s_A Chromosomal replication 98.2 9E-06 3.1E-10 96.2 14.6 182 190-393 104-303 (440)
187 1sxj_E Activator 1 40 kDa subu 98.2 1.5E-05 5E-10 91.9 16.0 195 190-394 13-235 (354)
188 3uk6_A RUVB-like 2; hexameric 98.2 3E-05 1E-09 89.8 17.9 201 190-394 43-301 (368)
189 3eie_A Vacuolar protein sortin 98.1 5E-05 1.7E-09 86.1 18.8 182 189-396 16-228 (322)
190 3syl_A Protein CBBX; photosynt 98.1 1.9E-05 6.5E-10 89.0 14.8 151 192-366 32-219 (309)
191 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.0001 3.6E-09 83.3 19.9 182 190-396 11-223 (322)
192 3b9p_A CG5977-PA, isoform A; A 98.1 6.2E-05 2.1E-09 84.2 18.0 182 189-396 19-233 (297)
193 2ra8_A Uncharacterized protein 98.1 7.6E-07 2.6E-11 102.3 2.0 62 720-781 250-319 (362)
194 2qp9_X Vacuolar protein sortin 98.0 0.00011 3.6E-09 84.5 19.1 182 189-396 49-261 (355)
195 1l8q_A Chromosomal replication 98.0 5.1E-05 1.8E-09 86.1 16.2 177 190-391 10-203 (324)
196 2p65_A Hypothetical protein PF 98.0 2.3E-05 7.8E-10 80.7 11.8 49 190-240 21-69 (187)
197 3pvs_A Replication-associated 98.0 7.2E-05 2.5E-09 88.2 17.1 175 189-393 24-212 (447)
198 1in4_A RUVB, holliday junction 98.0 0.00068 2.3E-08 77.0 23.6 261 190-495 24-322 (334)
199 2zan_A Vacuolar protein sortin 98.0 0.00014 5E-09 85.9 18.4 183 189-396 132-345 (444)
200 3u61_B DNA polymerase accessor 98.0 6.2E-05 2.1E-09 85.4 14.6 176 189-391 24-211 (324)
201 3cf0_A Transitional endoplasmi 97.9 0.00021 7.1E-09 80.0 18.4 175 190-391 14-223 (301)
202 3vfd_A Spastin; ATPase, microt 97.9 0.00021 7.1E-09 83.2 19.1 182 189-396 113-326 (389)
203 4gt6_A Cell surface protein; l 97.9 0.0006 2.1E-08 79.5 21.3 57 846-906 284-342 (394)
204 4gt6_A Cell surface protein; l 97.8 0.00063 2.1E-08 79.4 21.2 253 603-906 112-386 (394)
205 1a5t_A Delta prime, HOLB; zinc 97.8 0.00027 9.1E-09 80.4 17.4 181 197-395 8-204 (334)
206 4h09_A Hypothetical leucine ri 97.8 0.0011 3.7E-08 76.9 22.9 56 846-904 282-339 (379)
207 1sxj_C Activator 1 40 kDa subu 97.8 0.00047 1.6E-08 78.7 19.0 180 190-392 24-208 (340)
208 3n70_A Transport activator; si 97.7 6.8E-05 2.3E-09 74.0 8.9 47 192-238 2-48 (145)
209 4h09_A Hypothetical leucine ri 97.7 0.0035 1.2E-07 72.5 23.9 255 603-906 44-318 (379)
210 3hu3_A Transitional endoplasmi 97.6 0.00049 1.7E-08 82.0 15.7 179 191-395 204-414 (489)
211 3pxg_A Negative regulator of g 97.6 0.00037 1.3E-08 83.0 14.3 146 190-364 179-338 (468)
212 1ofh_A ATP-dependent HSL prote 97.6 0.00028 9.4E-09 79.3 12.5 49 191-239 15-75 (310)
213 4b4t_J 26S protease regulatory 97.6 0.00077 2.6E-08 77.1 15.9 171 190-389 147-354 (405)
214 1lv7_A FTSH; alpha/beta domain 97.5 0.0012 4.3E-08 71.8 16.1 179 189-393 10-222 (257)
215 3e4g_A ATP synthase subunit S, 97.5 4.1E-05 1.4E-09 77.3 3.8 85 849-935 60-155 (176)
216 4b4t_M 26S protease regulatory 97.5 0.00049 1.7E-08 79.9 13.4 171 189-388 179-386 (434)
217 3e4g_A ATP synthase subunit S, 97.5 3.2E-05 1.1E-09 78.2 2.3 88 810-914 60-155 (176)
218 3ec2_A DNA replication protein 97.5 0.0004 1.4E-08 71.1 10.5 26 214-239 38-63 (180)
219 4b4t_L 26S protease subunit RP 97.5 0.0019 6.6E-08 75.0 17.2 171 190-389 180-387 (437)
220 4fcw_A Chaperone protein CLPB; 97.4 0.00085 2.9E-08 75.3 13.7 50 191-240 17-73 (311)
221 2w58_A DNAI, primosome compone 97.4 0.00023 8E-09 74.4 8.5 60 190-249 24-89 (202)
222 4b4t_H 26S protease regulatory 97.4 0.0029 1E-07 73.2 18.0 170 191-389 209-415 (467)
223 2ce7_A Cell division protein F 97.4 0.0019 6.4E-08 76.3 16.6 173 190-389 15-221 (476)
224 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0012 4E-08 84.1 15.9 155 189-364 184-362 (758)
225 1qvr_A CLPB protein; coiled co 97.4 0.00033 1.1E-08 90.2 10.8 153 189-363 168-344 (854)
226 2bjv_A PSP operon transcriptio 97.4 0.00067 2.3E-08 74.3 11.8 49 191-239 6-54 (265)
227 4b4t_I 26S protease regulatory 97.4 0.0025 8.6E-08 73.1 16.3 171 190-389 181-388 (437)
228 2gno_A DNA polymerase III, gam 97.3 0.00092 3.1E-08 74.6 12.1 146 195-364 1-152 (305)
229 2r62_A Cell division protease 97.3 0.00024 8.1E-09 78.1 7.0 152 190-364 10-196 (268)
230 3co5_A Putative two-component 97.3 0.00014 4.8E-09 71.5 4.2 47 191-237 4-50 (143)
231 4b4t_K 26S protease regulatory 97.3 0.0024 8E-08 74.2 14.6 171 190-389 171-379 (428)
232 1ojl_A Transcriptional regulat 97.2 0.002 6.9E-08 72.0 13.4 48 191-238 2-49 (304)
233 3pxi_A Negative regulator of g 97.2 0.0017 5.7E-08 82.5 14.0 146 190-364 179-338 (758)
234 1eiw_A Hypothetical protein MT 97.2 0.00048 1.7E-08 63.4 6.3 72 12-109 3-74 (111)
235 2c9o_A RUVB-like 1; hexameric 97.2 0.0032 1.1E-07 74.8 15.2 50 190-239 36-88 (456)
236 1io0_A Tropomodulin; LRR prote 97.0 4.4E-05 1.5E-09 78.9 -2.5 13 767-779 34-46 (185)
237 1ixz_A ATP-dependent metallopr 97.0 0.011 3.6E-07 64.2 15.6 152 189-364 14-199 (254)
238 3t15_A Ribulose bisphosphate c 96.9 0.0058 2E-07 67.8 13.4 29 212-240 34-62 (293)
239 3m6a_A ATP-dependent protease 96.9 0.016 5.6E-07 70.0 17.9 51 191-241 81-135 (543)
240 3pxi_A Negative regulator of g 96.9 0.0037 1.3E-07 79.4 12.7 150 191-364 491-675 (758)
241 1iy2_A ATP-dependent metallopr 96.9 0.022 7.5E-07 62.6 17.2 153 188-364 37-223 (278)
242 2kjq_A DNAA-related protein; s 96.8 0.00094 3.2E-08 66.0 5.2 28 213-240 35-62 (149)
243 1io0_A Tropomodulin; LRR prote 96.8 0.00031 1.1E-08 72.4 1.7 14 767-780 149-162 (185)
244 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0068 2.3E-07 72.0 13.3 171 189-389 29-236 (499)
245 3rw6_A Nuclear RNA export fact 96.8 0.00043 1.5E-08 75.2 2.5 78 697-775 169-257 (267)
246 3cf2_A TER ATPase, transitiona 96.7 0.0042 1.4E-07 77.6 11.4 174 190-389 203-407 (806)
247 3rw6_A Nuclear RNA export fact 96.7 0.0011 3.8E-08 72.0 5.1 16 809-824 168-183 (267)
248 2x8a_A Nuclear valosin-contain 96.7 0.016 5.4E-07 63.5 14.2 150 191-364 10-191 (274)
249 1r6b_X CLPA protein; AAA+, N-t 96.7 0.016 5.6E-07 73.4 16.3 48 191-238 458-512 (758)
250 2cvh_A DNA repair and recombin 96.5 0.0048 1.6E-07 65.1 8.3 45 202-249 8-52 (220)
251 1ypw_A Transitional endoplasmi 96.2 0.021 7.4E-07 72.4 13.2 150 190-364 203-385 (806)
252 1um8_A ATP-dependent CLP prote 96.2 0.034 1.1E-06 64.1 13.6 26 214-239 72-97 (376)
253 3hyn_A Putative signal transdu 95.9 0.015 5.2E-07 57.2 7.2 103 14-123 6-131 (189)
254 3hr8_A Protein RECA; alpha and 95.8 0.032 1.1E-06 63.1 10.6 49 201-249 47-96 (356)
255 2qgz_A Helicase loader, putati 95.7 0.031 1.1E-06 62.3 10.3 59 191-249 124-188 (308)
256 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0096 3.3E-07 65.7 5.7 72 213-308 122-194 (331)
257 1qvr_A CLPB protein; coiled co 95.6 0.041 1.4E-06 70.6 12.3 50 191-240 558-614 (854)
258 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.025 8.4E-07 60.0 7.5 36 213-248 22-57 (235)
259 3dm5_A SRP54, signal recogniti 95.2 0.15 5E-06 59.2 13.7 29 213-241 99-127 (443)
260 1vma_A Cell division protein F 95.1 0.16 5.5E-06 56.2 13.4 36 213-249 103-138 (306)
261 1j8m_F SRP54, signal recogniti 95.0 0.22 7.5E-06 54.9 13.9 28 214-241 98-125 (297)
262 2b8t_A Thymidine kinase; deoxy 95.0 0.047 1.6E-06 57.4 8.0 111 213-334 11-126 (223)
263 1g5t_A COB(I)alamin adenosyltr 94.9 0.039 1.4E-06 56.3 6.9 116 215-334 29-163 (196)
264 1zu4_A FTSY; GTPase, signal re 94.9 0.079 2.7E-06 59.2 10.0 36 213-249 104-139 (320)
265 3lw7_A Adenylate kinase relate 94.8 0.12 3.9E-06 51.9 10.4 20 215-234 2-21 (179)
266 1jr3_D DNA polymerase III, del 94.8 0.34 1.2E-05 54.7 15.4 164 202-394 8-183 (343)
267 2zr9_A Protein RECA, recombina 94.8 0.059 2E-06 61.1 8.9 49 201-249 47-96 (349)
268 3bh0_A DNAB-like replicative h 94.7 0.22 7.4E-06 55.6 13.0 65 199-270 54-118 (315)
269 4a74_A DNA repair and recombin 94.6 0.039 1.3E-06 58.4 6.5 37 202-238 13-49 (231)
270 3io5_A Recombination and repai 94.4 0.056 1.9E-06 59.4 7.0 48 201-249 12-65 (333)
271 2ehv_A Hypothetical protein PH 94.4 0.082 2.8E-06 56.7 8.4 37 213-249 29-66 (251)
272 1u94_A RECA protein, recombina 94.3 0.076 2.6E-06 60.2 8.2 50 200-249 48-98 (356)
273 1v5w_A DMC1, meiotic recombina 94.3 0.11 3.7E-06 58.9 9.5 37 202-238 110-146 (343)
274 3kl4_A SRP54, signal recogniti 94.2 0.26 8.9E-06 57.1 12.6 29 213-241 96-124 (433)
275 1n0w_A DNA repair protein RAD5 94.1 0.065 2.2E-06 57.2 6.9 37 202-238 12-48 (243)
276 3jvv_A Twitching mobility prot 94.1 0.059 2E-06 61.1 6.8 111 214-337 123-234 (356)
277 2r44_A Uncharacterized protein 94.1 0.047 1.6E-06 61.6 5.9 46 191-240 27-72 (331)
278 2eyu_A Twitching motility prot 94.0 0.15 5.3E-06 55.1 9.6 111 213-336 24-135 (261)
279 1rz3_A Hypothetical protein rb 94.0 0.072 2.4E-06 55.2 6.7 44 196-239 3-47 (201)
280 1xp8_A RECA protein, recombina 94.0 0.15 5.2E-06 57.9 9.9 50 200-249 59-109 (366)
281 3bgw_A DNAB-like replicative h 93.9 0.49 1.7E-05 55.4 14.3 65 199-270 183-247 (444)
282 2q6t_A DNAB replication FORK h 93.8 0.68 2.3E-05 54.3 15.5 67 200-273 187-254 (444)
283 3c8u_A Fructokinase; YP_612366 93.8 0.049 1.7E-06 56.9 5.1 28 212-239 20-47 (208)
284 1qhx_A CPT, protein (chloramph 93.7 0.028 9.5E-07 56.9 2.9 25 215-239 4-28 (178)
285 2xxa_A Signal recognition part 93.7 0.24 8.4E-06 57.6 11.1 29 213-241 99-127 (433)
286 3hws_A ATP-dependent CLP prote 93.6 0.041 1.4E-06 63.0 4.5 48 192-239 16-76 (363)
287 3cf2_A TER ATPase, transitiona 93.6 0.068 2.3E-06 66.8 6.4 150 191-364 477-661 (806)
288 2orw_A Thymidine kinase; TMTK, 93.5 0.05 1.7E-06 55.5 4.4 26 215-240 4-29 (184)
289 2z43_A DNA repair and recombin 93.4 0.11 3.8E-06 58.3 7.4 39 201-239 94-132 (324)
290 3kb2_A SPBC2 prophage-derived 93.3 0.041 1.4E-06 55.2 3.3 25 215-239 2-26 (173)
291 2r2a_A Uncharacterized protein 93.3 0.13 4.6E-06 53.0 7.2 21 216-236 7-27 (199)
292 3dzd_A Transcriptional regulat 93.3 1.1 3.9E-05 50.9 15.7 48 191-238 129-176 (368)
293 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.067 2.3E-06 63.5 5.2 44 191-238 22-65 (500)
294 4a1f_A DNAB helicase, replicat 93.1 0.16 5.6E-06 56.8 8.0 70 195-271 28-97 (338)
295 1sky_E F1-ATPase, F1-ATP synth 93.0 0.14 4.9E-06 59.5 7.6 32 215-246 152-183 (473)
296 2ga8_A Hypothetical 39.9 kDa p 93.0 0.083 2.8E-06 59.2 5.4 48 195-242 3-52 (359)
297 1odf_A YGR205W, hypothetical 3 93.0 0.096 3.3E-06 57.6 5.9 30 211-240 28-57 (290)
298 3vaa_A Shikimate kinase, SK; s 92.9 0.051 1.7E-06 56.2 3.4 26 214-239 25-50 (199)
299 3trf_A Shikimate kinase, SK; a 92.9 0.05 1.7E-06 55.4 3.3 26 214-239 5-30 (185)
300 3tlx_A Adenylate kinase 2; str 92.8 0.11 3.8E-06 55.6 5.9 40 199-238 14-53 (243)
301 2r6a_A DNAB helicase, replicat 92.7 1.3 4.4E-05 52.0 15.5 62 201-269 191-253 (454)
302 4eun_A Thermoresistant glucoki 92.6 0.28 9.7E-06 50.5 8.6 26 213-238 28-53 (200)
303 3rfe_A Platelet glycoprotein I 92.5 0.12 4.1E-06 49.3 5.2 52 587-639 12-66 (130)
304 1nks_A Adenylate kinase; therm 92.5 0.1 3.6E-06 53.2 5.1 26 215-240 2-27 (194)
305 3e70_C DPA, signal recognition 92.5 0.28 9.5E-06 54.9 8.9 29 212-240 127-155 (328)
306 2ewv_A Twitching motility prot 92.5 0.4 1.4E-05 54.7 10.5 110 213-335 135-245 (372)
307 1g8p_A Magnesium-chelatase 38 92.4 0.08 2.7E-06 60.1 4.5 49 189-239 22-70 (350)
308 3uie_A Adenylyl-sulfate kinase 92.3 0.12 4.1E-06 53.4 5.3 28 212-239 23-50 (200)
309 1zuh_A Shikimate kinase; alpha 92.2 0.073 2.5E-06 53.3 3.4 27 213-239 6-32 (168)
310 2px0_A Flagellar biosynthesis 92.2 0.32 1.1E-05 53.6 8.9 28 213-240 104-131 (296)
311 1ly1_A Polynucleotide kinase; 92.2 0.077 2.6E-06 53.6 3.5 22 215-236 3-24 (181)
312 3ice_A Transcription terminati 92.1 0.072 2.5E-06 60.0 3.4 29 214-242 174-202 (422)
313 2rhm_A Putative kinase; P-loop 92.1 0.097 3.3E-06 53.6 4.2 25 214-238 5-29 (193)
314 3sr0_A Adenylate kinase; phosp 92.0 0.5 1.7E-05 49.0 9.5 88 216-315 2-94 (206)
315 1zp6_A Hypothetical protein AT 91.9 0.091 3.1E-06 53.7 3.7 25 213-237 8-32 (191)
316 3fwy_A Light-independent proto 91.8 0.13 4.6E-06 57.1 5.2 30 212-241 46-75 (314)
317 3iij_A Coilin-interacting nucl 91.8 0.069 2.4E-06 54.1 2.6 25 214-238 11-35 (180)
318 1xjc_A MOBB protein homolog; s 91.8 0.13 4.6E-06 51.3 4.6 29 213-241 3-31 (169)
319 2i1q_A DNA repair and recombin 91.8 0.21 7.2E-06 55.9 6.9 38 201-238 85-122 (322)
320 1puj_A YLQF, conserved hypothe 91.7 1.6 5.4E-05 47.6 13.7 36 57-93 13-48 (282)
321 1kag_A SKI, shikimate kinase I 91.7 0.071 2.4E-06 53.5 2.6 25 215-239 5-29 (173)
322 1ex7_A Guanylate kinase; subst 91.7 0.058 2E-06 55.0 1.9 28 215-242 2-29 (186)
323 2yvu_A Probable adenylyl-sulfa 91.7 0.15 5E-06 52.0 5.0 28 213-240 12-39 (186)
324 1via_A Shikimate kinase; struc 91.6 0.092 3.2E-06 52.9 3.3 24 216-239 6-29 (175)
325 2ze6_A Isopentenyl transferase 91.6 0.1 3.4E-06 56.4 3.7 25 215-239 2-26 (253)
326 2v3c_C SRP54, signal recogniti 91.6 0.18 6.2E-06 58.7 6.2 28 214-241 99-126 (432)
327 2jaq_A Deoxyguanosine kinase; 91.5 0.095 3.2E-06 54.1 3.4 25 216-240 2-26 (205)
328 1kht_A Adenylate kinase; phosp 91.5 0.1 3.5E-06 53.2 3.6 26 215-240 4-29 (192)
329 1tf7_A KAIC; homohexamer, hexa 91.4 0.38 1.3E-05 57.8 9.0 48 202-249 269-316 (525)
330 3t61_A Gluconokinase; PSI-biol 91.3 0.09 3.1E-06 54.4 3.0 25 214-238 18-42 (202)
331 2iyv_A Shikimate kinase, SK; t 91.3 0.083 2.8E-06 53.7 2.6 25 215-239 3-27 (184)
332 2c95_A Adenylate kinase 1; tra 91.3 0.11 3.7E-06 53.3 3.6 26 213-238 8-33 (196)
333 1knq_A Gluconate kinase; ALFA/ 91.2 0.12 4.2E-06 51.9 3.8 25 214-238 8-32 (175)
334 1kgd_A CASK, peripheral plasma 91.2 0.11 3.8E-06 52.7 3.4 26 214-239 5-30 (180)
335 1tue_A Replication protein E1; 91.2 0.16 5.6E-06 52.0 4.5 40 200-240 45-84 (212)
336 1tev_A UMP-CMP kinase; ploop, 91.1 0.13 4.3E-06 52.7 3.9 25 214-238 3-27 (196)
337 2bwj_A Adenylate kinase 5; pho 90.9 0.12 4.1E-06 53.1 3.5 26 214-239 12-37 (199)
338 1nn5_A Similar to deoxythymidy 90.9 0.18 6E-06 52.6 4.8 29 214-242 9-37 (215)
339 3a00_A Guanylate kinase, GMP k 90.9 0.1 3.6E-06 53.2 2.9 29 215-243 2-30 (186)
340 1e6c_A Shikimate kinase; phosp 90.9 0.1 3.4E-06 52.4 2.7 25 215-239 3-27 (173)
341 1ukz_A Uridylate kinase; trans 90.9 0.13 4.5E-06 53.2 3.7 26 213-238 14-39 (203)
342 3p32_A Probable GTPase RV1496/ 90.9 0.35 1.2E-05 54.9 7.6 41 201-241 66-106 (355)
343 2plr_A DTMP kinase, probable t 90.8 0.2 6.9E-06 52.0 5.1 28 215-242 5-32 (213)
344 3cm0_A Adenylate kinase; ATP-b 90.8 0.14 4.7E-06 52.1 3.8 25 214-238 4-28 (186)
345 1pgv_A TMD-1, tropomodulin TMD 90.8 0.11 3.8E-06 53.2 2.9 82 698-779 70-167 (197)
346 2j37_W Signal recognition part 90.8 0.33 1.1E-05 57.5 7.4 29 213-241 100-128 (504)
347 2yhs_A FTSY, cell division pro 90.8 0.66 2.3E-05 54.3 9.8 36 213-249 292-327 (503)
348 1uj2_A Uridine-cytidine kinase 90.8 0.13 4.5E-06 55.4 3.7 28 212-239 20-47 (252)
349 2pt5_A Shikimate kinase, SK; a 90.7 0.14 4.7E-06 51.1 3.6 24 216-239 2-25 (168)
350 1ny5_A Transcriptional regulat 90.7 4.3 0.00015 46.4 16.7 47 191-237 137-183 (387)
351 1g41_A Heat shock protein HSLU 90.7 0.19 6.6E-06 58.3 5.2 50 191-240 15-76 (444)
352 1qf9_A UMP/CMP kinase, protein 90.6 0.15 5.2E-06 52.0 3.9 25 214-238 6-30 (194)
353 1y63_A LMAJ004144AAA protein; 90.6 0.14 4.7E-06 52.2 3.5 24 214-237 10-33 (184)
354 2vli_A Antibiotic resistance p 90.6 0.1 3.5E-06 52.9 2.5 26 214-239 5-30 (183)
355 2pt7_A CAG-ALFA; ATPase, prote 90.6 0.31 1E-05 54.7 6.6 105 215-335 172-276 (330)
356 1uf9_A TT1252 protein; P-loop, 90.5 0.16 5.4E-06 52.4 3.9 26 212-237 6-31 (203)
357 1aky_A Adenylate kinase; ATP:A 90.4 0.14 4.6E-06 53.9 3.4 26 214-239 4-29 (220)
358 2bdt_A BH3686; alpha-beta prot 90.4 0.15 5E-06 52.1 3.5 22 215-236 3-24 (189)
359 3umf_A Adenylate kinase; rossm 90.4 0.17 5.9E-06 52.9 4.0 27 212-238 27-53 (217)
360 1cke_A CK, MSSA, protein (cyti 90.4 0.15 5.1E-06 53.8 3.6 24 215-238 6-29 (227)
361 2cdn_A Adenylate kinase; phosp 90.3 0.15 5.3E-06 52.6 3.6 26 214-239 20-45 (201)
362 3tau_A Guanylate kinase, GMP k 90.2 0.15 5E-06 53.2 3.4 27 213-239 7-33 (208)
363 2qor_A Guanylate kinase; phosp 90.2 0.11 3.8E-06 53.9 2.4 27 213-239 11-37 (204)
364 3tqc_A Pantothenate kinase; bi 90.2 0.24 8.1E-06 55.1 5.2 47 193-239 69-117 (321)
365 3asz_A Uridine kinase; cytidin 90.2 0.19 6.5E-06 52.3 4.2 27 213-239 5-31 (211)
366 2dr3_A UPF0273 protein PH0284; 90.1 0.23 7.7E-06 53.0 4.9 37 213-249 22-58 (247)
367 1gvn_B Zeta; postsegregational 90.1 0.21 7E-06 54.9 4.6 26 213-238 32-57 (287)
368 1pgv_A TMD-1, tropomodulin TMD 90.1 0.11 3.6E-06 53.4 2.0 91 808-909 38-137 (197)
369 2if2_A Dephospho-COA kinase; a 90.1 0.15 5.2E-06 52.7 3.4 21 216-236 3-23 (204)
370 3a4m_A L-seryl-tRNA(SEC) kinas 90.1 0.18 6.2E-06 54.5 4.1 26 214-239 4-29 (260)
371 2pbr_A DTMP kinase, thymidylat 90.0 0.17 5.7E-06 51.8 3.6 24 216-239 2-25 (195)
372 2wwf_A Thymidilate kinase, put 90.0 0.17 5.8E-06 52.6 3.7 28 214-241 10-37 (212)
373 3ney_A 55 kDa erythrocyte memb 89.9 0.14 4.6E-06 52.7 2.7 27 213-239 18-44 (197)
374 3lda_A DNA repair protein RAD5 89.8 0.36 1.2E-05 55.5 6.4 36 201-236 165-200 (400)
375 2qt1_A Nicotinamide riboside k 89.7 0.19 6.5E-06 52.2 3.7 25 213-237 20-44 (207)
376 3tr0_A Guanylate kinase, GMP k 89.7 0.16 5.6E-06 52.4 3.2 25 214-238 7-31 (205)
377 1ye8_A Protein THEP1, hypothet 89.7 0.19 6.5E-06 50.9 3.6 24 216-239 2-25 (178)
378 2wsm_A Hydrogenase expression/ 89.6 0.43 1.5E-05 49.8 6.5 43 197-241 15-57 (221)
379 2bbw_A Adenylate kinase 4, AK4 89.6 0.18 6.3E-06 53.9 3.6 25 214-238 27-51 (246)
380 2j41_A Guanylate kinase; GMP, 89.6 0.18 6E-06 52.2 3.4 25 214-238 6-30 (207)
381 2pez_A Bifunctional 3'-phospho 89.5 0.22 7.6E-06 50.3 4.0 27 214-240 5-31 (179)
382 3fb4_A Adenylate kinase; psych 89.3 0.2 6.8E-06 52.3 3.6 23 216-238 2-24 (216)
383 2grj_A Dephospho-COA kinase; T 89.3 0.21 7.3E-06 51.2 3.7 26 213-238 11-36 (192)
384 3l0o_A Transcription terminati 89.3 0.73 2.5E-05 51.9 8.1 29 214-242 175-203 (427)
385 1zak_A Adenylate kinase; ATP:A 89.2 0.17 6E-06 53.1 3.0 26 214-239 5-30 (222)
386 1gtv_A TMK, thymidylate kinase 89.2 0.14 4.9E-06 53.3 2.3 25 216-240 2-26 (214)
387 1jjv_A Dephospho-COA kinase; P 89.1 0.19 6.7E-06 52.0 3.3 22 215-236 3-24 (206)
388 2z0h_A DTMP kinase, thymidylat 89.1 0.22 7.4E-06 51.1 3.6 25 216-240 2-26 (197)
389 2hf9_A Probable hydrogenase ni 89.1 0.59 2E-05 49.0 7.1 40 200-241 26-65 (226)
390 3nwj_A ATSK2; P loop, shikimat 89.0 0.17 5.8E-06 54.2 2.7 25 215-239 49-73 (250)
391 3cmu_A Protein RECA, recombina 88.9 0.27 9.3E-06 66.9 5.2 48 202-249 1414-1462(2050)
392 1q57_A DNA primase/helicase; d 88.9 1.5 5.2E-05 52.2 11.4 56 212-273 240-296 (503)
393 1zd8_A GTP:AMP phosphotransfer 88.9 0.2 6.9E-06 52.9 3.2 25 214-238 7-31 (227)
394 3cmw_A Protein RECA, recombina 88.9 0.59 2E-05 62.9 8.3 48 202-249 1418-1466(1706)
395 4e22_A Cytidylate kinase; P-lo 88.8 0.2 7E-06 53.8 3.2 26 214-239 27-52 (252)
396 2ck3_D ATP synthase subunit be 88.7 0.77 2.6E-05 53.3 8.1 53 214-269 153-206 (482)
397 2jeo_A Uridine-cytidine kinase 88.6 0.28 9.5E-06 52.5 4.1 26 213-238 24-49 (245)
398 1lvg_A Guanylate kinase, GMP k 88.6 0.2 6.7E-06 51.7 2.8 25 215-239 5-29 (198)
399 3dl0_A Adenylate kinase; phosp 88.6 0.21 7.2E-06 52.2 3.1 23 216-238 2-24 (216)
400 1fx0_B ATP synthase beta chain 88.6 0.81 2.8E-05 53.3 8.2 53 214-269 165-218 (498)
401 1m7g_A Adenylylsulfate kinase; 88.4 0.29 9.9E-06 51.0 4.0 27 213-239 24-50 (211)
402 4gp7_A Metallophosphoesterase; 88.4 0.22 7.4E-06 50.0 3.0 22 213-234 8-29 (171)
403 3cmu_A Protein RECA, recombina 88.3 0.6 2.1E-05 63.6 7.8 48 202-249 1068-1116(2050)
404 3aez_A Pantothenate kinase; tr 88.3 0.3 1E-05 54.3 4.2 29 212-240 88-116 (312)
405 3d3q_A TRNA delta(2)-isopenten 88.3 0.25 8.4E-06 55.2 3.5 25 215-239 8-32 (340)
406 3ake_A Cytidylate kinase; CMP 88.2 0.27 9.3E-06 50.8 3.6 24 216-239 4-27 (208)
407 3k1j_A LON protease, ATP-depen 88.1 0.26 8.8E-06 60.4 3.9 47 190-240 40-86 (604)
408 3e1s_A Exodeoxyribonuclease V, 88.0 0.57 1.9E-05 56.8 6.8 28 214-241 204-231 (574)
409 1rj9_A FTSY, signal recognitio 88.0 0.39 1.3E-05 53.1 4.9 36 213-249 101-136 (304)
410 3be4_A Adenylate kinase; malar 87.9 0.29 1E-05 51.2 3.7 24 215-238 6-29 (217)
411 2p5t_B PEZT; postsegregational 87.9 0.23 7.9E-06 53.4 3.0 27 213-239 31-57 (253)
412 2f6r_A COA synthase, bifunctio 87.9 0.29 9.9E-06 53.6 3.8 24 213-236 74-97 (281)
413 1htw_A HI0065; nucleotide-bind 87.8 0.51 1.7E-05 46.6 5.1 27 212-238 31-57 (158)
414 2zts_A Putative uncharacterize 87.8 0.36 1.2E-05 51.4 4.5 37 213-249 29-66 (251)
415 1e4v_A Adenylate kinase; trans 87.8 0.3 1E-05 50.9 3.7 23 216-238 2-24 (214)
416 3r20_A Cytidylate kinase; stru 87.8 0.29 1E-05 51.7 3.6 26 214-239 9-34 (233)
417 3end_A Light-independent proto 87.8 0.44 1.5E-05 52.9 5.2 30 212-241 39-68 (307)
418 1ak2_A Adenylate kinase isoenz 87.4 0.31 1.1E-05 51.7 3.6 26 214-239 16-41 (233)
419 2xb4_A Adenylate kinase; ATP-b 87.4 0.31 1.1E-05 51.2 3.6 23 216-238 2-24 (223)
420 1vht_A Dephospho-COA kinase; s 87.4 0.34 1.2E-05 50.7 3.8 23 214-236 4-26 (218)
421 1a7j_A Phosphoribulokinase; tr 87.4 0.21 7.2E-06 54.9 2.2 27 213-239 4-30 (290)
422 1cp2_A CP2, nitrogenase iron p 87.3 0.52 1.8E-05 51.0 5.4 34 215-248 2-35 (269)
423 2f1r_A Molybdopterin-guanine d 87.3 0.26 9E-06 49.4 2.7 26 215-240 3-28 (171)
424 2v54_A DTMP kinase, thymidylat 87.3 0.3 1E-05 50.3 3.3 24 215-238 5-28 (204)
425 1znw_A Guanylate kinase, GMP k 87.2 0.29 1E-05 50.8 3.1 25 214-238 20-44 (207)
426 3crm_A TRNA delta(2)-isopenten 87.1 0.3 1E-05 54.1 3.3 24 215-238 6-29 (323)
427 1np6_A Molybdopterin-guanine d 87.1 0.49 1.7E-05 47.5 4.6 27 214-240 6-32 (174)
428 1svm_A Large T antigen; AAA+ f 87.0 0.52 1.8E-05 53.7 5.3 29 210-238 165-193 (377)
429 3cnl_A YLQF, putative uncharac 87.0 1.7 5.7E-05 46.8 9.1 29 57-85 11-39 (262)
430 3rfe_A Platelet glycoprotein I 87.0 0.67 2.3E-05 44.0 5.3 53 566-618 12-68 (130)
431 1yrb_A ATP(GTP)binding protein 86.9 0.58 2E-05 50.3 5.5 27 213-239 13-39 (262)
432 2r8r_A Sensor protein; KDPD, P 86.9 0.64 2.2E-05 48.5 5.4 27 215-241 7-33 (228)
433 3a8t_A Adenylate isopentenyltr 86.8 0.24 8.3E-06 55.1 2.3 26 213-238 39-64 (339)
434 3b9q_A Chloroplast SRP recepto 86.8 0.51 1.8E-05 52.1 5.0 36 213-249 99-134 (302)
435 1z6g_A Guanylate kinase; struc 86.8 0.26 9E-06 51.7 2.5 25 214-238 23-47 (218)
436 2i3b_A HCR-ntpase, human cance 86.7 0.33 1.1E-05 49.6 3.1 24 216-239 3-26 (189)
437 2afh_E Nitrogenase iron protei 86.6 0.58 2E-05 51.3 5.3 28 214-241 2-29 (289)
438 3exa_A TRNA delta(2)-isopenten 86.4 0.32 1.1E-05 53.4 3.0 25 214-238 3-27 (322)
439 1s96_A Guanylate kinase, GMP k 86.2 0.37 1.3E-05 50.5 3.2 26 214-239 16-41 (219)
440 1cr0_A DNA primase/helicase; R 86.2 0.54 1.9E-05 51.8 4.8 30 212-241 33-62 (296)
441 1sq5_A Pantothenate kinase; P- 86.2 0.47 1.6E-05 52.7 4.3 28 212-239 78-105 (308)
442 2j9r_A Thymidine kinase; TK1, 86.0 1.1 3.7E-05 46.4 6.5 109 213-335 27-139 (214)
443 3foz_A TRNA delta(2)-isopenten 85.9 0.39 1.4E-05 52.6 3.3 26 213-238 9-34 (316)
444 1u0j_A DNA replication protein 85.7 0.63 2.1E-05 50.0 4.7 37 202-238 92-128 (267)
445 2p67_A LAO/AO transport system 85.7 1.1 3.7E-05 50.5 7.0 31 210-240 52-82 (341)
446 1ls1_A Signal recognition part 85.6 0.69 2.4E-05 50.9 5.2 36 213-249 97-132 (295)
447 3cmw_A Protein RECA, recombina 85.5 1.2 4.1E-05 60.0 8.3 54 196-249 364-418 (1706)
448 1q3t_A Cytidylate kinase; nucl 85.3 0.48 1.6E-05 50.2 3.7 27 212-238 14-40 (236)
449 1g8f_A Sulfate adenylyltransfe 85.2 0.61 2.1E-05 55.2 4.8 28 213-240 394-421 (511)
450 2og2_A Putative signal recogni 85.2 0.68 2.3E-05 52.3 5.0 36 213-249 156-191 (359)
451 3hjn_A DTMP kinase, thymidylat 85.2 1.5 5.1E-05 45.0 7.2 33 216-248 2-34 (197)
452 3lnc_A Guanylate kinase, GMP k 85.1 0.29 9.9E-06 51.8 1.8 25 214-238 27-52 (231)
453 1ltq_A Polynucleotide kinase; 85.1 0.45 1.6E-05 52.5 3.5 23 215-237 3-25 (301)
454 1pzn_A RAD51, DNA repair and r 84.9 0.55 1.9E-05 53.1 4.1 37 202-238 119-155 (349)
455 1nlf_A Regulatory protein REPA 84.8 0.78 2.7E-05 50.0 5.2 27 214-240 30-56 (279)
456 2qmh_A HPR kinase/phosphorylas 84.8 0.4 1.4E-05 48.9 2.5 25 214-238 34-58 (205)
457 4edh_A DTMP kinase, thymidylat 84.6 1.3 4.3E-05 46.2 6.4 28 214-241 6-33 (213)
458 3b85_A Phosphate starvation-in 84.5 0.42 1.4E-05 49.7 2.7 23 215-237 23-45 (208)
459 4eaq_A DTMP kinase, thymidylat 84.5 0.64 2.2E-05 49.1 4.1 28 213-240 25-52 (229)
460 3eph_A TRNA isopentenyltransfe 84.5 0.57 1.9E-05 53.4 3.9 25 215-239 3-27 (409)
461 1t9h_A YLOQ, probable GTPase E 84.3 1.9 6.4E-05 47.5 7.9 22 215-236 174-195 (307)
462 2axn_A 6-phosphofructo-2-kinas 84.3 0.8 2.7E-05 54.7 5.4 31 213-243 34-64 (520)
463 1oix_A RAS-related protein RAB 84.2 0.55 1.9E-05 47.8 3.4 23 214-236 29-51 (191)
464 3b5x_A Lipid A export ATP-bind 84.1 2 6.7E-05 52.3 8.8 24 213-236 368-391 (582)
465 1tq4_A IIGP1, interferon-induc 84.0 0.7 2.4E-05 53.2 4.5 36 201-236 56-91 (413)
466 2ocp_A DGK, deoxyguanosine kin 83.9 0.58 2E-05 49.7 3.6 26 214-239 2-27 (241)
467 2onk_A Molybdate/tungstate ABC 83.9 0.52 1.8E-05 50.1 3.1 24 212-236 23-46 (240)
468 2qm8_A GTPase/ATPase; G protei 83.8 1.4 4.9E-05 49.3 6.9 29 211-239 52-80 (337)
469 2dyk_A GTP-binding protein; GT 83.8 0.63 2.1E-05 45.4 3.5 22 215-236 2-23 (161)
470 2pcj_A ABC transporter, lipopr 83.7 0.47 1.6E-05 49.9 2.7 23 214-236 30-52 (224)
471 3fdi_A Uncharacterized protein 83.5 0.61 2.1E-05 48.1 3.4 25 215-239 7-31 (201)
472 3cr8_A Sulfate adenylyltranfer 83.5 0.86 2.9E-05 54.7 5.1 28 213-240 368-395 (552)
473 3tif_A Uncharacterized ABC tra 83.4 0.48 1.6E-05 50.3 2.6 24 213-236 30-53 (235)
474 2ged_A SR-beta, signal recogni 83.2 0.9 3.1E-05 46.0 4.6 24 213-236 47-70 (193)
475 3llm_A ATP-dependent RNA helic 83.2 2.3 8E-05 44.8 8.0 21 215-235 77-97 (235)
476 4dzz_A Plasmid partitioning pr 83.2 0.9 3.1E-05 46.7 4.6 34 215-248 2-36 (206)
477 3kjh_A CO dehydrogenase/acetyl 83.0 0.92 3.1E-05 48.2 4.7 32 217-248 3-34 (254)
478 3ea0_A ATPase, para family; al 82.8 1.2 4.1E-05 47.2 5.5 39 213-251 3-42 (245)
479 2wji_A Ferrous iron transport 82.7 0.69 2.4E-05 45.7 3.3 22 215-236 4-25 (165)
480 2fz4_A DNA repair protein RAD2 82.7 6.3 0.00022 41.5 11.1 39 195-238 94-132 (237)
481 3zvl_A Bifunctional polynucleo 82.7 0.45 1.5E-05 55.3 2.2 27 212-238 256-282 (416)
482 2cbz_A Multidrug resistance-as 82.6 0.53 1.8E-05 50.0 2.6 25 213-237 30-54 (237)
483 2f9l_A RAB11B, member RAS onco 82.6 0.66 2.3E-05 47.5 3.2 23 214-236 5-27 (199)
484 3ld9_A DTMP kinase, thymidylat 82.5 1.6 5.6E-05 45.6 6.2 28 213-240 20-47 (223)
485 2v9p_A Replication protein E1; 82.4 0.99 3.4E-05 49.7 4.7 27 212-238 124-150 (305)
486 2d2e_A SUFC protein; ABC-ATPas 82.4 0.64 2.2E-05 49.8 3.1 24 214-237 29-52 (250)
487 3gfo_A Cobalt import ATP-bindi 82.3 0.55 1.9E-05 51.0 2.6 23 214-236 34-56 (275)
488 3v9p_A DTMP kinase, thymidylat 82.1 1.4 4.6E-05 46.4 5.4 28 214-241 25-52 (227)
489 1b0u_A Histidine permease; ABC 82.0 0.57 2E-05 50.6 2.6 24 213-236 31-54 (262)
490 2zu0_C Probable ATP-dependent 82.0 0.67 2.3E-05 50.2 3.1 25 213-237 45-69 (267)
491 3fkq_A NTRC-like two-domain pr 82.0 1.1 3.8E-05 51.1 5.1 38 212-249 141-179 (373)
492 3iqw_A Tail-anchored protein t 81.9 1.3 4.5E-05 49.5 5.6 38 212-249 14-51 (334)
493 1ji0_A ABC transporter; ATP bi 81.9 0.59 2E-05 49.7 2.6 23 214-236 32-54 (240)
494 2ffh_A Protein (FFH); SRP54, s 81.9 1.2 4.2E-05 51.4 5.4 29 213-241 97-125 (425)
495 4g1u_C Hemin import ATP-bindin 81.8 0.59 2E-05 50.6 2.6 23 214-236 37-59 (266)
496 2ce2_X GTPase HRAS; signaling 81.8 0.74 2.5E-05 44.9 3.1 21 216-236 5-25 (166)
497 1sgw_A Putative ABC transporte 81.7 0.52 1.8E-05 49.1 2.0 23 214-236 35-57 (214)
498 1mv5_A LMRA, multidrug resista 81.6 0.71 2.4E-05 49.2 3.1 24 213-236 27-50 (243)
499 1g6h_A High-affinity branched- 81.6 0.61 2.1E-05 50.2 2.6 23 214-236 33-55 (257)
500 2pze_A Cystic fibrosis transme 81.6 0.62 2.1E-05 49.2 2.6 24 214-237 34-57 (229)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-47 Score=384.21 Aligned_cols=172 Identities=45% Similarity=0.707 Sum_probs=146.3
Q ss_pred CCCccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHH
Q 000943 9 VSDWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDE 88 (1214)
Q Consensus 9 ~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~E 88 (1214)
+..++|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEEEEeecccccccccchhHHhhhhhHhhhcccHHHHHHHHHHHHHHhhccCCcccccchhHH
Q 000943 89 LVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEETFRMNIEKVQKWRDALKKVANISGWELKDRNESEF 168 (1214)
Q Consensus 89 l~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~aL~~~a~~~g~~~~~~~e~~~ 168 (1214)
|++|++|.+.+|+ +||||||+|+|++||+|+|+||+||++|+++ .+.+++++||.||+++|+++||++. ++|+++
T Consensus 84 L~~i~~~~~~~~~--~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~ 158 (176)
T 3jrn_A 84 LVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKL 158 (176)
T ss_dssp HHHHHHHHHTTSC--EEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHH
T ss_pred HHHHHhhhccCCC--EEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCHHHH
Confidence 9999999988888 9999999999999999999999999999987 5789999999999999999999994 789999
Q ss_pred HHHHHhhhhcccCcccccc
Q 000943 169 IVDIVKDILKMSSKIPAKF 187 (1214)
Q Consensus 169 i~~i~~~i~~~~~~~~~~~ 187 (1214)
|++||++| .++++++++
T Consensus 159 i~~Iv~~v--~~~l~~~~~ 175 (176)
T 3jrn_A 159 VDKIANEI--SNKKTIYAT 175 (176)
T ss_dssp HHHHHHHH--HTTCC----
T ss_pred HHHHHHHH--HHHhcCCCC
Confidence 99999999 888887664
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.3e-46 Score=383.05 Aligned_cols=170 Identities=42% Similarity=0.772 Sum_probs=157.6
Q ss_pred CCCCccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHH
Q 000943 8 KVSDWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLD 87 (1214)
Q Consensus 8 ~~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~ 87 (1214)
+.+.++|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||+||++|.||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCceEEEEEEEeecccccccccchhHHhhhhhHhhhcccHHHHHHHHHHHHHHhhccCCcccc-cch
Q 000943 88 ELVKIVELKST-NGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEETFRMNIEKVQKWRDALKKVANISGWELKD-RNE 165 (1214)
Q Consensus 88 El~~~~~~~~~-~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~~~~~~~~~~~~w~~aL~~~a~~~g~~~~~-~~e 165 (1214)
||++|++|.++ +|+ +||||||+|+|++||+|+|+||+||++|++++. .+++++||.||+++|+++||++.+ ..|
T Consensus 110 EL~~I~e~~~~~~~~--~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e 185 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRR--IILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQ 185 (204)
T ss_dssp HHHHHHHHHHHCTTS--EECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCH
T ss_pred HHHHHHHHHHhcCCe--eeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCH
Confidence 99999999875 567 999999999999999999999999999998774 589999999999999999999987 568
Q ss_pred hHHHHHHHhhhhcccCcc
Q 000943 166 SEFIVDIVKDILKMSSKI 183 (1214)
Q Consensus 166 ~~~i~~i~~~i~~~~~~~ 183 (1214)
+++|++||++| +++++
T Consensus 186 ~~~i~~Iv~di--~~kl~ 201 (204)
T 3ozi_A 186 GAIADKVSADI--WSHIS 201 (204)
T ss_dssp HHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHH--HHHhc
Confidence 89999999999 76654
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.5e-38 Score=387.90 Aligned_cols=301 Identities=16% Similarity=0.130 Sum_probs=236.0
Q ss_pred ccchhhHHHHHHHHhhh-cCCcEEEEEEecCCchHHHHHHHHHH----HHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 194 VGIDSRWKKLRFLIDKE-LNGVRMIGICGMGGIGKTTLARVVYD----LIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 194 vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
|||+.++++|.++|..+ ..+.++|+|+|||||||||||+++|+ +++.+|+.++|+. +++... .+...++.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 59999999999999755 34689999999999999999999996 7889999999985 433221 36788999999
Q ss_pred HhhhcCCC-CCcccc-----cchHHHHHHHhCCC-cEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhhhcC
Q 000943 269 SQLLKLPD-SGIWDV-----YDGLKMIGTRLRYR-RVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLTTYG 341 (1214)
Q Consensus 269 ~~ll~~~~-~~~~~~-----~~~~~~l~~~L~~k-r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 341 (1214)
.++..... ....+. ......+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 98654322 122222 33478899999996 999999999998876 3332 27999999999999988875
Q ss_pred -ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCCChHHHHHHHH-HHhcCCC
Q 000943 342 -VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGKTTKEWESSIQ-RLKRDSE 419 (1214)
Q Consensus 342 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~-~l~~~~~ 419 (1214)
....|+|++|+.++|++||.+++|.... .+.+.+++++|+++|+|+||||+++|+.|+.+. .+|...+. .+.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccH
Confidence 4468999999999999999999986543 357788999999999999999999999998774 33433333 2333245
Q ss_pred ccHHHHHHHhHhCCCHHHHHHHH-----------hhcccCCCCCHHHHHHHHhhC--CCcc-----------hhhhHHhh
Q 000943 420 KDILDILQISFDGLKEIERKIFL-----------DIACFHRGKSRDYVTKILDYC--DFDA-----------VIGIRVLI 475 (1214)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~ 475 (1214)
..+..+++.||+.||++.|.||+ +||+||+++..+ ..+|.+. |+.. ...++.|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 56777888888888888888888 999999998877 5677776 4432 23689999
Q ss_pred ccCceEEecC---CeEEecHHHHHHHHHHHHhcC
Q 000943 476 DKSLIEISSG---NRLWMHDLLQEMGQQIVKKQS 506 (1214)
Q Consensus 476 ~~sLi~~~~~---~~~~mHdLv~e~~~~i~~~e~ 506 (1214)
++|||+.... .+|.|||+||++|+.++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999987643 479999999999998887654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-33 Score=379.98 Aligned_cols=308 Identities=18% Similarity=0.260 Sum_probs=245.8
Q ss_pred ccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH---HhcccCccEEEEeehhhhccCCHHH
Q 000943 186 KFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL---IAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 186 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
.|..+..||||++++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+||..+++.. ......
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 197 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLM 197 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHH
Confidence 3456678999999999999999866678899999999999999999999975 456688777666554421 223344
Q ss_pred HHHHHHHhhhcCCC---CCcccccchHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchh
Q 000943 263 LQKQLLSQLLKLPD---SGIWDVYDGLKMIGTRLRYR--RVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLL 337 (1214)
Q Consensus 263 l~~~ll~~ll~~~~---~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 337 (1214)
..+.++..+..... ....+.+...+.++..+.++ |+||||||||+.++|+.+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 45556655433221 12234455666777777766 999999999998877654 6899999999999988
Q ss_pred hh-cCccceeecCC-CCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCCChHHHHHHHHHHh
Q 000943 338 TT-YGVDEVLKLKE-LHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGKTTKEWESSIQRLK 415 (1214)
Q Consensus 338 ~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 415 (1214)
.. .+....++++. |+++||++||...++... +.+.+.+++|+++|+|+||||+++|++|+.+. .+|...++.+.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHh
Confidence 54 45567899996 999999999999884332 33456789999999999999999999998765 57999998886
Q ss_pred cCCC-----------ccHHHHHHHhHhCCCHHHHHHHHhhcccCCCC--CHHHHHHHHhhCCCcchhhhHHhhccCceEE
Q 000943 416 RDSE-----------KDILDILQISFDGLKEIERKIFLDIACFHRGK--SRDYVTKILDYCDFDAVIGIRVLIDKSLIEI 482 (1214)
Q Consensus 416 ~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~ 482 (1214)
.... ..+..+++.||+.|++++|+||+++|+||+++ +.+.+..+|..++......++.|+++|||+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEE
Confidence 5431 35899999999999999999999999999886 5678899998877778888999999999998
Q ss_pred ecCCe---EEecHHHHHHHHHHHHhc
Q 000943 483 SSGNR---LWMHDLLQEMGQQIVKKQ 505 (1214)
Q Consensus 483 ~~~~~---~~mHdLv~e~~~~i~~~e 505 (1214)
..++. |.||+++|+++++...++
T Consensus 427 ~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecCCCceEEEecHHHHHHHHhhhhHH
Confidence 76554 999999999999887654
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.7e-33 Score=341.12 Aligned_cols=281 Identities=19% Similarity=0.201 Sum_probs=214.6
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH--HHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD--LIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
+..|||++++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+..++|.++++ ..+...+...++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~---~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC---SSSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC---CCCHHHHHHHHH
Confidence 34599999999999999743 3589999999999999999999997 57889998555555543 344555555555
Q ss_pred HhhhcCC-----CCC-----cccccchHHHHHHHh---CCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 269 SQLLKLP-----DSG-----IWDVYDGLKMIGTRL---RYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 269 ~~ll~~~-----~~~-----~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
..+.... ..+ ..+.+.....+++.| .+||+||||||||+.++|+.+. +||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 4321100 000 112334455666655 6899999999999999998762 7999999999998
Q ss_pred hhhhcCccceeecC------CCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCC--ChHHH
Q 000943 336 LLTTYGVDEVLKLK------ELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGK--TTKEW 407 (1214)
Q Consensus 336 v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~--~~~~w 407 (1214)
++..+.....|+|+ +|+.+||++||+++. +... .++..++ |+|+||||+++|+.|+++ +.++|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-----QDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-----HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 87654433466777 999999999999984 3221 2233333 999999999999999876 67788
Q ss_pred HHHHHHHhcCCCccHHHHHHHhHhCCCHHH-HHHHHhhcccCCCCC--HHHHHHHHhhCCC-cchhhhHHhhccCceEEe
Q 000943 408 ESSIQRLKRDSEKDILDILQISFDGLKEIE-RKIFLDIACFHRGKS--RDYVTKILDYCDF-DAVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 408 ~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~--~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~ 483 (1214)
... ....+..+|+.||+.|++++ |+||+++|+||++.. .+.+..+|.+.+. .+...++.|+++|||+..
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe
Confidence 653 35679999999999999999 999999999998765 5678889987753 366789999999999986
Q ss_pred c-CCeEEecHHHHHHH
Q 000943 484 S-GNRLWMHDLLQEMG 498 (1214)
Q Consensus 484 ~-~~~~~mHdLv~e~~ 498 (1214)
+ .++|.||||+++++
T Consensus 421 ~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSEEBCCCHHHHHH
T ss_pred CCCCEEEehHHHHHHh
Confidence 3 56899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=334.79 Aligned_cols=302 Identities=18% Similarity=0.241 Sum_probs=228.5
Q ss_pred cccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH---hcccCccEEEEeehhhhccCCHHHH
Q 000943 187 FDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI---AHEFEGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 187 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~~~~~~~~~~~~~~~~~~~~l 263 (1214)
|..+..||||+.++++|.+.|....++.++|+|+||||+||||||++++++. +.+|+..+||..+..... ..+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~-~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK-SGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH-HHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch-HHHHHH
Confidence 4566789999999999999998655678999999999999999999999743 778975444444433211 112222
Q ss_pred HHHHHHhhhcCC---CCCcccccchHHHHHHHhCC--CcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchhh
Q 000943 264 QKQLLSQLLKLP---DSGIWDVYDGLKMIGTRLRY--RRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLLT 338 (1214)
Q Consensus 264 ~~~ll~~ll~~~---~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~~ 338 (1214)
...++..+.... .....+.......++..+.+ +++||||||||+..+++.+ ++|++||||||++.++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 223333322111 12223445556677777765 7999999999998776543 67999999999998876
Q ss_pred hcCccceeec---CCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhhCCCChHHHHHHHHHHh
Q 000943 339 TYGVDEVLKL---KELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFLCGKTTKEWESSIQRLK 415 (1214)
Q Consensus 339 ~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L~~~~~~~w~~~l~~l~ 415 (1214)
.+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. .+|...++.+.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 653 334555 5899999999999988642 223345788999999999999999999998764 46988888877
Q ss_pred cCC-----------CccHHHHHHHhHhCCCHHHHHHHHhhcccCCCC--CHHHHHHHHhhCCCcchhhhHHhhccCceEE
Q 000943 416 RDS-----------EKDILDILQISFDGLKEIERKIFLDIACFHRGK--SRDYVTKILDYCDFDAVIGIRVLIDKSLIEI 482 (1214)
Q Consensus 416 ~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~ 482 (1214)
... ...+..++..||+.|++++|.||+++|+||++. +.+.+..+|..........++.|+++|||..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEE
Confidence 532 246899999999999999999999999999865 4567888887665566778999999999987
Q ss_pred ecC---CeEEecHHHHHHHHHH
Q 000943 483 SSG---NRLWMHDLLQEMGQQI 501 (1214)
Q Consensus 483 ~~~---~~~~mHdLv~e~~~~i 501 (1214)
..+ .+|.||+++|+++++.
T Consensus 427 ~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 427 DRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEETTEEEEECCHHHHHHHHHH
T ss_pred ecCCCccEEEEcHHHHHHHHhh
Confidence 643 2699999999999877
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.1e-31 Score=342.29 Aligned_cols=383 Identities=21% Similarity=0.209 Sum_probs=276.2
Q ss_pred hhhhhcCcCeeeecccCccCCCCccC-CCCCceEEEecCCCCC-CCCCCC-C-ccccccccccccccc-ccccccccccC
Q 000943 555 AKAFLKMTNLRMLTIGNVQLPEGLEF-LPNELRFLEWHGYPFK-SLPSNF-Q-PENFFELNMCYSRME-RMWSGIKPLSN 629 (1214)
Q Consensus 555 ~~~f~~~~~Lr~L~l~~~~l~~~~~~-l~~~Lr~L~l~~~~l~-~lp~~~-~-~~~L~~L~L~~~~l~-~l~~~~~~L~~ 629 (1214)
+..|.++++|++|++++|.+.+.+.. -..+|++|++++|.+. .+|..+ . +.+|++|++++|.+. .+|..+..+++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 56777888888888888776432221 2246888888888776 677766 3 378888888888777 56677788888
Q ss_pred ccEEecCCCcCCCCCCC--CCCCCCccEEeccCccCCCccCccccCCC-CCcEEecC-----------------------
Q 000943 630 LKIMRLCNAKNLISTPD--LTGLPNLEELDLRGCTRLRDIHPSLLLHK-NLVSVNLK----------------------- 683 (1214)
Q Consensus 630 L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~si~~l~-~L~~L~L~----------------------- 683 (1214)
|+.|+|++|.....+|. +.++++|++|+|++|.....+|..+..++ +|++|+++
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 88888888876645553 67777777777777655445665555444 45555554
Q ss_pred ---CCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCc-ccCcccCCCCCCcEEecCCCCCC
Q 000943 684 ---DCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE-ELPSSIQLLNGLILLNLEKCTHL 758 (1214)
Q Consensus 684 ---~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l 758 (1214)
+|.....+|..+ .+++|++|+|++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|...
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 443333455544 5667777777776666666777777777777777777776 56667777777777777777777
Q ss_pred CcCCcccCCCCCCCEEEecCCCCCCccC-----CCCccccccCCcccc-CCcccccccCCCcEEeecCCCCCCCCCcccc
Q 000943 759 VGLPSTINDLTSLITLNLSGCSKSKNVG-----VESLEGLGSSRTVLR-NPESSIFSMQNFEALSFLGWTLPQSLPSPYL 832 (1214)
Q Consensus 759 ~~lp~~l~~L~sL~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l 832 (1214)
..+|..+.++++|+.|++++|.....+| +++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|....
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 7777777777777777777777766655 667778888887776 4577777888888888888777655543211
Q ss_pred c------------------------------------------------------ccCCcccccCCC-cCCCCCCCEEec
Q 000943 833 R------------------------------------------------------RSSHNVALRLPS-LLGLCSLTKLDL 857 (1214)
Q Consensus 833 ~------------------------------------------------------~~~~~~~~~lp~-~~~l~~L~~L~L 857 (1214)
. ...+...+.+|. +..+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 0 001222233343 666889999999
Q ss_pred CCCCCCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecCCcCCCcccCCc---cccceeeecCccccc
Q 000943 858 SDCNLGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEECKRLQSLSQLP---SNIEEVRLNGCASLG 933 (1214)
Q Consensus 858 s~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp---~sL~~L~l~~C~~L~ 933 (1214)
++|++ .+.+|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+.-..+|... ++|+.|++++|.--+
T Consensus 640 s~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 640 SYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99998 4679999999999999999999998 899999999999999999998666777543 689999999999888
Q ss_pred ccccc
Q 000943 934 TLSHA 938 (1214)
Q Consensus 934 ~l~~~ 938 (1214)
.+|..
T Consensus 719 ~iP~~ 723 (768)
T 3rgz_A 719 PIPEM 723 (768)
T ss_dssp ECCSS
T ss_pred cCCCc
Confidence 88863
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.9e-30 Score=333.40 Aligned_cols=355 Identities=21% Similarity=0.213 Sum_probs=285.4
Q ss_pred hhcCcCeeeecccCccCCCCcc-CCCCCceEEEecCCCCCCCCCCC-Cccccccccccccccc-ccccccccccCccEEe
Q 000943 558 FLKMTNLRMLTIGNVQLPEGLE-FLPNELRFLEWHGYPFKSLPSNF-QPENFFELNMCYSRME-RMWSGIKPLSNLKIMR 634 (1214)
Q Consensus 558 f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~-~l~~~~~~L~~L~~L~ 634 (1214)
+.++++|+.|++++|.+.+... .-..+|++|++++|.+...+..+ .+.+|++|++++|.+. .+|..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 6788899999998887654322 22346999999999887754446 7899999999999988 6677889999999999
Q ss_pred cCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCC-CCCcEEecCCCCCCCccCccc-ccccccceecccccCCC
Q 000943 635 LCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLH-KNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLK 712 (1214)
Q Consensus 635 Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l-~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~ 712 (1214)
|++|.....+|.. .+++|++|+|++|.....+|..++.+ ++|++|+|++|.....+|..+ .+++|++|+|++|....
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9999877666666 88899999999987666888888775 899999999987666777777 78899999999987776
Q ss_pred CCccc-cCCCCcceEEEeeCccCc-ccCcccCCCC-CCcEEecCCCCCCCcCCcccCC--CCCCCEEEecCCCCCCccC-
Q 000943 713 KFPEV-VGSMECLLELFLDGTAIE-ELPSSIQLLN-GLILLNLEKCTHLVGLPSTIND--LTSLITLNLSGCSKSKNVG- 786 (1214)
Q Consensus 713 ~lp~~-~~~l~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~l~~--L~sL~~L~ls~c~~l~~~p- 786 (1214)
.+|.. ++++++|++|++++|.+. .+|..+..++ +|+.|++++|.....+|..+.. +++|++|++++|.....+|
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 77765 888999999999999887 7888888776 8888888888877777777766 7788888888887665555
Q ss_pred ----CCCccccccCCcccc-CCcccccccCCCcEEeecCCCCCCCCCc--------ccccccCCcccccCCC-cCCCCCC
Q 000943 787 ----VESLEGLGSSRTVLR-NPESSIFSMQNFEALSFLGWTLPQSLPS--------PYLRRSSHNVALRLPS-LLGLCSL 852 (1214)
Q Consensus 787 ----l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~l~~--------~~l~~~~~~~~~~lp~-~~~l~~L 852 (1214)
+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|. ..+.+..|.+.+.+|. +.++++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 677888888888887 4477888888888888888887765543 3355667777767775 7788999
Q ss_pred CEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecCCcCCCcc
Q 000943 853 TKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEECKRLQSL 914 (1214)
Q Consensus 853 ~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~l 914 (1214)
+.|+|++|++. +.+|.+++.+++|+.|+|++|.+. .+|..+..+++|+.|+|++|+....+
T Consensus 493 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 493 NWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99999999984 568889999999999999999888 78888999999999999988644333
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-29 Score=318.52 Aligned_cols=391 Identities=18% Similarity=0.164 Sum_probs=291.6
Q ss_pred cChhhhhcCcCeeeecccCccCC----CCccCCCCCceEEEecCCCCCCCC-CCC-Cccccccccccccccccc-ccccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLP----EGLEFLPNELRFLEWHGYPFKSLP-SNF-QPENFFELNMCYSRMERM-WSGIK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~l~~l-~~~~~ 625 (1214)
+.+..|.++++|++|++++|.+. ..+..++ +|++|++++|.+..++ ..| .+.+|++|++++|.+..+ +..+.
T Consensus 48 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred CChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 44678999999999999998763 3344444 5999999999998774 455 889999999999999987 57789
Q ss_pred cccCccEEecCCCcCCC-CCCCCCCCCCccEEeccCccCCCccCccccCCCCCc--EEecCCCCCCCccCcccccc----
Q 000943 626 PLSNLKIMRLCNAKNLI-STPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLV--SVNLKDCTDLTTLPNKIAMI---- 698 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~-~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~--~L~L~~c~~l~~lp~~~~l~---- 698 (1214)
.+++|++|+|++|.... ..|.+..+++|++|+|++|......|..++.+++|+ .|++++|......|..+...
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 99999999999998766 447777799999999999754444456678888888 88888865444333332222
Q ss_pred ------------------------------------------------cccceecccccCCCCCccccCCCCcceEEEee
Q 000943 699 ------------------------------------------------HLRKLVLSGCSKLKKFPEVVGSMECLLELFLD 730 (1214)
Q Consensus 699 ------------------------------------------------~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~ 730 (1214)
+|+.|++++|......+..++.+++|++|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 56666666665544455568888999999999
Q ss_pred CccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC------CCCccccccCCccccCC-
Q 000943 731 GTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG------VESLEGLGSSRTVLRNP- 803 (1214)
Q Consensus 731 ~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p------l~~L~~L~l~~~~l~~~- 803 (1214)
+|.+.++|..+..+++|++|++++|......|..+.++++|++|++++|.....+| +++|+.|++++|.+...
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 99999999999999999999999988777777788889999999999987664443 67888999999888776
Q ss_pred --cccccccCCCcEEeecCCCCCCCCC--------cccccccCCcccccCCC--cCCCCCCCEEecCCCCCCCCCccccc
Q 000943 804 --ESSIFSMQNFEALSFLGWTLPQSLP--------SPYLRRSSHNVALRLPS--LLGLCSLTKLDLSDCNLGEGAIPSDI 871 (1214)
Q Consensus 804 --~~~~~~l~~L~~L~l~~~~~~~~l~--------~~~l~~~~~~~~~~lp~--~~~l~~L~~L~Ls~~~l~~~~lp~~l 871 (1214)
+..+..+++|+.|++++|.+....+ ...+.+..+......|. +..+++|+.|+|++|.+. +..|..+
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 445 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLF 445 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB-TTCTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC-CcCHHHH
Confidence 5677888999999998887643221 12344555555544443 667888888888888874 4556777
Q ss_pred CCCCCCcEEeCCCCCCee--cC--cccCCCCCCCEEeecCCcCCCcccCC---ccccceeeecCcccccccccccccchh
Q 000943 872 GNLCSLKELCLSKNKFIL--LP--ESISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRLNGCASLGTLSHALKLCKS 944 (1214)
Q Consensus 872 ~~l~sL~~L~L~~n~l~~--lp--~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l~~C~~L~~l~~~~~~~~~ 944 (1214)
..+++|+.|+|++|.+.. +| ..+..+++|+.|+|++|..-...|.. .++|+.|++++|......|..+..+..
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 888888888888887763 22 46778888888888887533222322 267888888888655555655555544
Q ss_pred h
Q 000943 945 I 945 (1214)
Q Consensus 945 l 945 (1214)
+
T Consensus 526 L 526 (606)
T 3t6q_A 526 I 526 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.8e-30 Score=322.17 Aligned_cols=330 Identities=16% Similarity=0.217 Sum_probs=240.5
Q ss_pred CCCCCCCCCC-Ccccccccccccccccc------------------cccccc--cccCccEEecCCCcCCCCCCC-CCCC
Q 000943 593 YPFKSLPSNF-QPENFFELNMCYSRMER------------------MWSGIK--PLSNLKIMRLCNAKNLISTPD-LTGL 650 (1214)
Q Consensus 593 ~~l~~lp~~~-~~~~L~~L~L~~~~l~~------------------l~~~~~--~L~~L~~L~Ls~~~~l~~~p~-~~~l 650 (1214)
|.++.+|..+ .+.+|++|+|++|.+.. +|..+. ++++|++|+|++|.....+|. ++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4455578777 78899999999999988 888888 999999999999987777665 8889
Q ss_pred CCccEEeccCccCCC--ccCccccCC------CCCcEEecCCCCCCCccCc--cc-ccccccceecccccCCCCCccccC
Q 000943 651 PNLEELDLRGCTRLR--DIHPSLLLH------KNLVSVNLKDCTDLTTLPN--KI-AMIHLRKLVLSGCSKLKKFPEVVG 719 (1214)
Q Consensus 651 ~~L~~L~L~~c~~l~--~lp~si~~l------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~~~ 719 (1214)
++|++|+|++|..+. .+|..++.+ ++|++|+|++|. ++.+|. .+ .+++|++|++++|.....+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999986455 588888776 899999999864 458887 55 78899999999887665888 788
Q ss_pred CCCcceEEEeeCccCcccCcccCCCCC-CcEEecCCCCCCCcCCcccCCCC--CCCEEEecCCCCCCccC----------
Q 000943 720 SMECLLELFLDGTAIEELPSSIQLLNG-LILLNLEKCTHLVGLPSTINDLT--SLITLNLSGCSKSKNVG---------- 786 (1214)
Q Consensus 720 ~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~--sL~~L~ls~c~~l~~~p---------- 786 (1214)
.+++|++|++++|.+..+|.++..+++ |+.|++++|... .+|..+..++ +|+.|++++|......|
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 889999999999999999988988988 999999988765 7888777655 89999999988766443
Q ss_pred --CCCccccccCCccccCCccccc-ccCCCcEEeecCCCCCCCCCc----------------ccccccCCcccccCCC-c
Q 000943 787 --VESLEGLGSSRTVLRNPESSIF-SMQNFEALSFLGWTLPQSLPS----------------PYLRRSSHNVALRLPS-L 846 (1214)
Q Consensus 787 --l~~L~~L~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~----------------~~l~~~~~~~~~~lp~-~ 846 (1214)
..+|+.|++++|.++.+|..+. .+++|+.|++++|.+. .+|. ..++++.|.+. .+|. +
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 3478899999999988877654 5889999999988876 3322 11223333333 3443 3
Q ss_pred C--CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCC------CCCCe-ecCcccCCCCCCCEEeecCCcCCCcccC-
Q 000943 847 L--GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLS------KNKFI-LLPESISCLSKLWIIDLEECKRLQSLSQ- 916 (1214)
Q Consensus 847 ~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~------~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~- 916 (1214)
. .+++|+.|+|++|++.. +|..+..+++|+.|+|+ +|++. .+|..+..+++|+.|+|++|.. ..+|.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 2 55666666666666543 55556666666666663 33333 5555566666666666666543 55553
Q ss_pred CccccceeeecCcc
Q 000943 917 LPSNIEEVRLNGCA 930 (1214)
Q Consensus 917 lp~sL~~L~l~~C~ 930 (1214)
++++|+.|++++|+
T Consensus 585 ~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 ITPNISVLDIKDNP 598 (636)
T ss_dssp CCTTCCEEECCSCT
T ss_pred HhCcCCEEECcCCC
Confidence 34566666666654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.5e-30 Score=328.51 Aligned_cols=329 Identities=15% Similarity=0.191 Sum_probs=224.6
Q ss_pred CCCCCCCCCC-Ccccccccccccccccc------------------cccccc--cccCccEEecCCCcCCCCCCC-CCCC
Q 000943 593 YPFKSLPSNF-QPENFFELNMCYSRMER------------------MWSGIK--PLSNLKIMRLCNAKNLISTPD-LTGL 650 (1214)
Q Consensus 593 ~~l~~lp~~~-~~~~L~~L~L~~~~l~~------------------l~~~~~--~L~~L~~L~Ls~~~~l~~~p~-~~~l 650 (1214)
|.+..+|..+ .+.+|+.|+|++|.+.. +|..+. ++++|++|+|++|.....+|. |+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444478776 78888888888888887 888877 888889999888887777665 7888
Q ss_pred CCccEEeccCccCCC--ccCccccCCC-------CCcEEecCCCCCCCccCc--cc-ccccccceecccccCCCCCcccc
Q 000943 651 PNLEELDLRGCTRLR--DIHPSLLLHK-------NLVSVNLKDCTDLTTLPN--KI-AMIHLRKLVLSGCSKLKKFPEVV 718 (1214)
Q Consensus 651 ~~L~~L~L~~c~~l~--~lp~si~~l~-------~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~~ 718 (1214)
++|++|+|++|..+. .+|..++.++ +|++|+|++|. +..+|. .+ .+++|+.|+|++|... .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 888899988876454 4776665554 88888888864 448887 55 7888888888887654 788 78
Q ss_pred CCCCcceEEEeeCccCcccCcccCCCCC-CcEEecCCCCCCCcCCcccCCCCC--CCEEEecCCCCCCccC---------
Q 000943 719 GSMECLLELFLDGTAIEELPSSIQLLNG-LILLNLEKCTHLVGLPSTINDLTS--LITLNLSGCSKSKNVG--------- 786 (1214)
Q Consensus 719 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~s--L~~L~ls~c~~l~~~p--------- 786 (1214)
+++++|+.|+|++|.+..+|..+..+++ |+.|+|++|... .+|..+..++. |+.|++++|.....+|
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 8888899999988888888888888888 999999888755 78877776654 8888888887765443
Q ss_pred -CCCccccccCCccccCCccccc-ccCCCcEEeecCCCCCCCCCc----------------ccccccCCcccccCCC-cC
Q 000943 787 -VESLEGLGSSRTVLRNPESSIF-SMQNFEALSFLGWTLPQSLPS----------------PYLRRSSHNVALRLPS-LL 847 (1214)
Q Consensus 787 -l~~L~~L~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~----------------~~l~~~~~~~~~~lp~-~~ 847 (1214)
..+|+.|++++|.+..+|..+. .+++|+.|++++|.+. .+|. ..+.++.|.+. .+|. +.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhh
Confidence 3478888888888888877764 7888999998888776 2221 11222333333 3333 22
Q ss_pred --CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCC------CCCe-ecCcccCCCCCCCEEeecCCcCCCcccC-C
Q 000943 848 --GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSK------NKFI-LLPESISCLSKLWIIDLEECKRLQSLSQ-L 917 (1214)
Q Consensus 848 --~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~-l 917 (1214)
.+++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|.. ..+|. +
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 44555555555555532 455555555555555543 3222 4444555555555555555433 44443 3
Q ss_pred ccccceeeecCcc
Q 000943 918 PSNIEEVRLNGCA 930 (1214)
Q Consensus 918 p~sL~~L~l~~C~ 930 (1214)
+++|+.|++++|+
T Consensus 826 ~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 826 TPQLYILDIADNP 838 (876)
T ss_dssp CSSSCEEECCSCT
T ss_pred cCCCCEEECCCCC
Confidence 3455555555554
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.3e-30 Score=319.98 Aligned_cols=318 Identities=16% Similarity=0.177 Sum_probs=266.1
Q ss_pred cccccccccccccccCccEEecCCCcCCC------------------CCCCCC--CCCCccEEeccCccCCCccCccccC
Q 000943 614 YSRMERMWSGIKPLSNLKIMRLCNAKNLI------------------STPDLT--GLPNLEELDLRGCTRLRDIHPSLLL 673 (1214)
Q Consensus 614 ~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~------------------~~p~~~--~l~~L~~L~L~~c~~l~~lp~si~~ 673 (1214)
+|++..+|..+.++++|++|+|++|.... .++.++ ++++|++|+|++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 57888899999999999999999999776 444577 9999999999999989999999999
Q ss_pred CCCCcEEecCCCCCCC--ccCccc-cc------ccccceecccccCCCCCcc--ccCCCCcceEEEeeCccCc-ccCccc
Q 000943 674 HKNLVSVNLKDCTDLT--TLPNKI-AM------IHLRKLVLSGCSKLKKFPE--VVGSMECLLELFLDGTAIE-ELPSSI 741 (1214)
Q Consensus 674 l~~L~~L~L~~c~~l~--~lp~~~-~l------~~L~~L~Ls~c~~l~~lp~--~~~~l~~L~~L~L~~~~i~-~lp~~i 741 (1214)
+++|++|+|++|..++ .+|..+ .+ ++|++|++++|... .+|. .++++++|++|++++|.+. .+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 9999999999987565 588877 44 99999999998755 8999 8999999999999999999 999 99
Q ss_pred CCCCCCcEEecCCCCCCCcCCcccCCCCC-CCEEEecCCCCCCccC-------CCCccccccCCccccCC-ccccc----
Q 000943 742 QLLNGLILLNLEKCTHLVGLPSTINDLTS-LITLNLSGCSKSKNVG-------VESLEGLGSSRTVLRNP-ESSIF---- 808 (1214)
Q Consensus 742 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~s-L~~L~ls~c~~l~~~p-------l~~L~~L~l~~~~l~~~-~~~~~---- 808 (1214)
+.+++|+.|++++|... .+|..+.++++ |++|++++|... .+| +++|+.|++++|.+... |..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 99999999999998765 89999999999 999999999866 555 34799999999999875 66666
Q ss_pred ---ccCCCcEEeecCCCCCCCCC--------cccccccCCcccccCCC--cCC-------CCCCCEEecCCCCCCCCCcc
Q 000943 809 ---SMQNFEALSFLGWTLPQSLP--------SPYLRRSSHNVALRLPS--LLG-------LCSLTKLDLSDCNLGEGAIP 868 (1214)
Q Consensus 809 ---~l~~L~~L~l~~~~~~~~l~--------~~~l~~~~~~~~~~lp~--~~~-------l~~L~~L~Ls~~~l~~~~lp 868 (1214)
.+.+|+.|++++|.+....+ ...+.++.|.+. .+|. +.. +++|+.|+|++|++. .+|
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp 504 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLS 504 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCC
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC--ccC
Confidence 78899999999998873221 123455666666 5554 222 238999999999996 488
Q ss_pred cccC--CCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCC------cCCCcccCC---ccccceeeecCccccccccc
Q 000943 869 SDIG--NLCSLKELCLSKNKFILLPESISCLSKLWIIDLEEC------KRLQSLSQL---PSNIEEVRLNGCASLGTLSH 937 (1214)
Q Consensus 869 ~~l~--~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C------~~L~~lp~l---p~sL~~L~l~~C~~L~~l~~ 937 (1214)
..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++| .....+|.. .++|+.|++++|.. +.+|.
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 8887 899999999999999999999999999999999654 344555532 26899999999976 88887
Q ss_pred cc
Q 000943 938 AL 939 (1214)
Q Consensus 938 ~~ 939 (1214)
.+
T Consensus 584 ~~ 585 (636)
T 4eco_A 584 KI 585 (636)
T ss_dssp CC
T ss_pred hH
Confidence 53
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.8e-28 Score=305.70 Aligned_cols=380 Identities=19% Similarity=0.170 Sum_probs=256.8
Q ss_pred cChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCC-CCCC-Ccccccccccccccccccc-cccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSL-PSNF-QPENFFELNMCYSRMERMW-SGIK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~-~~~~ 625 (1214)
+....|.++++|++|++++|.+.. .+..+ .+|++|++++|.++.+ |..| .+.+|++|++++|.+..++ ..+.
T Consensus 47 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred eChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 345578888999999998887643 23333 3589999999988888 5566 7888999999999888777 5688
Q ss_pred cccCccEEecCCCcCCC-CCC-CCCCCCCccEEeccCccCCCccCccccCCCCCc----EEecCCCCCCCccCccc-ccc
Q 000943 626 PLSNLKIMRLCNAKNLI-STP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLV----SVNLKDCTDLTTLPNKI-AMI 698 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~----~L~L~~c~~l~~lp~~~-~l~ 698 (1214)
.+++|++|+|++|.... .+| .|+++++|++|+|++|......+..++.+.+|+ +|++++|. ++.+|... ...
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCc
Confidence 89999999999887654 334 488889999999988654433344555555443 67777754 44555443 444
Q ss_pred cccceecccccCC----------------------------------------------------------CCCccccCC
Q 000943 699 HLRKLVLSGCSKL----------------------------------------------------------KKFPEVVGS 720 (1214)
Q Consensus 699 ~L~~L~Ls~c~~l----------------------------------------------------------~~lp~~~~~ 720 (1214)
+|+.|++++|... ...|. +..
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~ 283 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC 283 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-ccc
Confidence 7777777776421 11222 556
Q ss_pred CCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCC
Q 000943 721 MECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSR 797 (1214)
Q Consensus 721 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~ 797 (1214)
+++|+.|+++++.+..+| .+..+++|+.|++++|.. ..+|. + .+++|++|++++|......+ +++|+.|++++
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence 778888888888888888 788888888888888877 77773 4 78888888888886554443 66777888888
Q ss_pred ccccCC---cccccccCCCcEEeecCCCCCCCC-------CcccccccCCcccccCC--CcCCCCCCCEEecCCCCCCCC
Q 000943 798 TVLRNP---ESSIFSMQNFEALSFLGWTLPQSL-------PSPYLRRSSHNVALRLP--SLLGLCSLTKLDLSDCNLGEG 865 (1214)
Q Consensus 798 ~~l~~~---~~~~~~l~~L~~L~l~~~~~~~~l-------~~~~l~~~~~~~~~~lp--~~~~l~~L~~L~Ls~~~l~~~ 865 (1214)
|.++.. +..+..+++|+.|++++|.+.... ....+.+..+......| .+..+++|+.|+|++|.+. +
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 438 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-I 438 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-E
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-c
Confidence 877665 566777777888887777643211 11233344444444444 3566777777777777763 3
Q ss_pred CcccccCCCCCCcEEeCCCCCCee--cCcccCCCCCCCEEeecCCcCCCcccCC---ccccceeeecCcccccccccccc
Q 000943 866 AIPSDIGNLCSLKELCLSKNKFIL--LPESISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRLNGCASLGTLSHALK 940 (1214)
Q Consensus 866 ~lp~~l~~l~sL~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l~~C~~L~~l~~~~~ 940 (1214)
..|..+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|..-...|.. .++|+.|++++|......|..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 456667777777777777777663 5667777777777777776433222321 25677777777754444444443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.2e-28 Score=311.97 Aligned_cols=324 Identities=16% Similarity=0.174 Sum_probs=266.6
Q ss_pred cccccccc--ccccccccccccccCccEEecCCCcCCC------------------CCCCCC--CCCCccEEeccCccCC
Q 000943 607 FFELNMCY--SRMERMWSGIKPLSNLKIMRLCNAKNLI------------------STPDLT--GLPNLEELDLRGCTRL 664 (1214)
Q Consensus 607 L~~L~L~~--~~l~~l~~~~~~L~~L~~L~Ls~~~~l~------------------~~p~~~--~l~~L~~L~L~~c~~l 664 (1214)
+..+.+.. |.+..+|..+.+|++|+.|+|++|.... .++.++ ++++|++|+|++|...
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 33444443 7777899999999999999999998776 344566 9999999999999989
Q ss_pred CccCccccCCCCCcEEecCCCCCCC--ccCccc-ccc-------cccceecccccCCCCCcc--ccCCCCcceEEEeeCc
Q 000943 665 RDIHPSLLLHKNLVSVNLKDCTDLT--TLPNKI-AMI-------HLRKLVLSGCSKLKKFPE--VVGSMECLLELFLDGT 732 (1214)
Q Consensus 665 ~~lp~si~~l~~L~~L~L~~c~~l~--~lp~~~-~l~-------~L~~L~Ls~c~~l~~lp~--~~~~l~~L~~L~L~~~ 732 (1214)
..+|..++++++|++|+|++|..++ .+|..+ .++ +|+.|+|++|... .+|. .++++++|+.|+|++|
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence 9999999999999999999987566 488765 454 9999999998765 8999 8999999999999999
Q ss_pred cCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCC-CCEEEecCCCCCCccC-------CCCccccccCCccccCCc
Q 000943 733 AIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTS-LITLNLSGCSKSKNVG-------VESLEGLGSSRTVLRNPE 804 (1214)
Q Consensus 733 ~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~s-L~~L~ls~c~~l~~~p-------l~~L~~L~l~~~~l~~~~ 804 (1214)
.+..+| .++.+++|+.|+|++|... .+|..+.++++ |+.|++++|... .+| ..+|+.|++++|.+...+
T Consensus 584 ~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 584 KVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred Ccccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 999999 8999999999999999876 89999999999 999999999865 555 234999999999997654
Q ss_pred ccc----c--ccCCCcEEeecCCCCCCCCCc---------ccccccCCcccccCCC-c-C-------CCCCCCEEecCCC
Q 000943 805 SSI----F--SMQNFEALSFLGWTLPQSLPS---------PYLRRSSHNVALRLPS-L-L-------GLCSLTKLDLSDC 860 (1214)
Q Consensus 805 ~~~----~--~l~~L~~L~l~~~~~~~~l~~---------~~l~~~~~~~~~~lp~-~-~-------~l~~L~~L~Ls~~ 860 (1214)
+.+ . .+.+|+.|++++|.+.. +|. ..+.++.|.+. .+|. + . ++++|+.|+|++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred ccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence 333 2 45689999999999873 332 33456666665 5555 2 2 2338999999999
Q ss_pred CCCCCCcccccC--CCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCC------cCCCcccCC---ccccceeeecCc
Q 000943 861 NLGEGAIPSDIG--NLCSLKELCLSKNKFILLPESISCLSKLWIIDLEEC------KRLQSLSQL---PSNIEEVRLNGC 929 (1214)
Q Consensus 861 ~l~~~~lp~~l~--~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C------~~L~~lp~l---p~sL~~L~l~~C 929 (1214)
++. .+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++| .....+|.. .++|+.|++++|
T Consensus 739 ~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 739 KLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 997 4898887 999999999999999999999999999999999874 344455532 278999999999
Q ss_pred cccccccccc
Q 000943 930 ASLGTLSHAL 939 (1214)
Q Consensus 930 ~~L~~l~~~~ 939 (1214)
.. +.+|..+
T Consensus 817 ~L-~~Ip~~l 825 (876)
T 4ecn_A 817 DI-RKVDEKL 825 (876)
T ss_dssp CC-CBCCSCC
T ss_pred CC-CccCHhh
Confidence 76 8888754
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.1e-28 Score=303.36 Aligned_cols=381 Identities=19% Similarity=0.143 Sum_probs=301.0
Q ss_pred cChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCC-CCC-Cccccccccccccccc--cccccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLP-SNF-QPENFFELNMCYSRME--RMWSGI 624 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~l~--~l~~~~ 624 (1214)
+.+.+|.++++|++|++++|.+.. .+..++ +|++|++++|.+..+| ..+ .+.+|++|++++|.+. .+|..+
T Consensus 71 i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 149 (606)
T 3vq2_A 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred cCHHHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH
Confidence 446789999999999999987643 344444 5999999999999988 345 8999999999999998 478999
Q ss_pred ccccCccEEecCCCcCCCCCCC-CCCCCCcc----EEeccCccCCCccCccccCCCCCcEEecCCCCCC-----------
Q 000943 625 KPLSNLKIMRLCNAKNLISTPD-LTGLPNLE----ELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDL----------- 688 (1214)
Q Consensus 625 ~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~----~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l----------- 688 (1214)
.++++|++|+|++|......+. +..+.+|+ +|++++| .+..++.......+|+.|++++|...
T Consensus 150 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 228 (606)
T 3vq2_A 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228 (606)
T ss_dssp GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-CcceeCcccccCceeeeeeccCCccchhHHHHHhccc
Confidence 9999999999999987665543 55555544 7888885 46677766666668888888776421
Q ss_pred -----------------------------------------------CccCcccccccccceecccccCCCCCccccCCC
Q 000943 689 -----------------------------------------------TTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSM 721 (1214)
Q Consensus 689 -----------------------------------------------~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l 721 (1214)
..+|....+++|+.|++++|. +..+| .+..+
T Consensus 229 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l~~~ 306 (606)
T 3vq2_A 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKH 306 (606)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CCCTT
T ss_pred cccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhh-hcccc
Confidence 112222257889999999975 46677 78889
Q ss_pred CcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc--C-----CCCccccc
Q 000943 722 ECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV--G-----VESLEGLG 794 (1214)
Q Consensus 722 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~--p-----l~~L~~L~ 794 (1214)
++|++|++++|.+..+| .+ .+++|+.|++++|...... .+..+++|++|++++|...... | +++|+.|+
T Consensus 307 ~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred ccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 99999999999999999 45 9999999999999766655 5678999999999999765431 2 78899999
Q ss_pred cCCccccCCcccccccCCCcEEeecCCCCCCCCC---------cccccccCCcccccCCC-cCCCCCCCEEecCCCCCCC
Q 000943 795 SSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLP---------SPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGE 864 (1214)
Q Consensus 795 l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~---------~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~ 864 (1214)
+++|.+..+|..+..+++|+.|++++|.+....+ ...+.++.|......|. +.++++|+.|+|++|.+..
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 9999999888889999999999999987765433 13455667777766665 7889999999999999865
Q ss_pred CCcccccCCCCCCcEEeCCCCCCeec-CcccCCCCCCCEEeecCCcCCCcccCC---ccccceeeecCcccccccccccc
Q 000943 865 GAIPSDIGNLCSLKELCLSKNKFILL-PESISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRLNGCASLGTLSHALK 940 (1214)
Q Consensus 865 ~~lp~~l~~l~sL~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l~~C~~L~~l~~~~~ 940 (1214)
..+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+.....|.. .++|+.|++++|. ++.+|..+.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~ 541 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQ 541 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHh
Confidence 45788999999999999999999865 567899999999999998544433432 2689999999996 778887644
Q ss_pred cc
Q 000943 941 LC 942 (1214)
Q Consensus 941 ~~ 942 (1214)
.+
T Consensus 542 ~l 543 (606)
T 3vq2_A 542 HF 543 (606)
T ss_dssp GS
T ss_pred hh
Confidence 43
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.4e-27 Score=299.31 Aligned_cols=370 Identities=19% Similarity=0.189 Sum_probs=248.9
Q ss_pred hhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCC--CCCCCcccccccccccccccccc-cccccc
Q 000943 555 AKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSL--PSNFQPENFFELNMCYSRMERMW-SGIKPL 627 (1214)
Q Consensus 555 ~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L~~~~l~~l~-~~~~~L 627 (1214)
+..|.++++|++|++++|.+.. .+..+ .+|++|++++|.+..+ |..+.+.+|++|++++|.+..++ ..+..+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 4456666666666666665543 12222 2477777777776665 44446677777777777776553 346666
Q ss_pred cCcc--EEecCCCcCCCCCCCCCCCC----------------------------------------------------Cc
Q 000943 628 SNLK--IMRLCNAKNLISTPDLTGLP----------------------------------------------------NL 653 (1214)
Q Consensus 628 ~~L~--~L~Ls~~~~l~~~p~~~~l~----------------------------------------------------~L 653 (1214)
.+|+ .|++++|......|...... +|
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 6666 66777666554444332222 34
Q ss_pred cEEeccCccCCCccCc-cccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeC
Q 000943 654 EELDLRGCTRLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDG 731 (1214)
Q Consensus 654 ~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~ 731 (1214)
++|++++|. +..++. .+..+++|++|++++| .++.+|..+ .+++|++|++++|......|..++.+++|++|++++
T Consensus 257 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 257 ESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEECTTCC-CSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eEEEeecCc-cCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 445555432 333333 4777888999999885 566888776 788899999998876666677888888999999998
Q ss_pred ccCc-ccCcc-cCCCCCCcEEecCCCCCCCcC--CcccCCCCCCCEEEecCCCCCCccC-----CCCccccccCCccccC
Q 000943 732 TAIE-ELPSS-IQLLNGLILLNLEKCTHLVGL--PSTINDLTSLITLNLSGCSKSKNVG-----VESLEGLGSSRTVLRN 802 (1214)
Q Consensus 732 ~~i~-~lp~~-i~~l~~L~~L~L~~c~~l~~l--p~~l~~L~sL~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~~ 802 (1214)
|.+. .+|.. +..+++|+.|++++|...... |..+..+++|++|++++|......| +++|+.|++++|.+..
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 8877 56554 788889999999888766554 6678888899999998887654433 6788888999888876
Q ss_pred C--cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcc--cccCCCCCCc
Q 000943 803 P--ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIP--SDIGNLCSLK 878 (1214)
Q Consensus 803 ~--~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp--~~l~~l~sL~ 878 (1214)
. +..+..+++|+.|++++|.+....+ ..+..+++|+.|+|++|.+....+| ..+..+++|+
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSE---------------QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCT---------------TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred cccchhhhCcccCCEEECCCCccCCcCH---------------HHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 5 2347888899999998887654321 1255677888888888877543232 4577778888
Q ss_pred EEeCCCCCCeec-CcccCCCCCCCEEeecCCcCCCcccCCc---cccceeeecCcccccccccccccch
Q 000943 879 ELCLSKNKFILL-PESISCLSKLWIIDLEECKRLQSLSQLP---SNIEEVRLNGCASLGTLSHALKLCK 943 (1214)
Q Consensus 879 ~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~~L~~lp~lp---~sL~~L~l~~C~~L~~l~~~~~~~~ 943 (1214)
.|+|++|.++.+ |..+..+++|+.|+|++|+--...|... ++| .|++++|......|..+..+.
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 888888877755 4677788888888888775333333222 455 777777765544444444333
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.6e-28 Score=300.68 Aligned_cols=372 Identities=22% Similarity=0.237 Sum_probs=242.4
Q ss_pred cChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCC-CC-Cccccccccccccccccccc-ccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMWS-GIK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~ 625 (1214)
+...+|.++++|++|++++|.+.. .+..+ .+|++|++++|.++.+|. .| .+.+|++|++++|.+..++. .+.
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred cChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccc
Confidence 345578889999999998887643 23333 359999999998888874 45 78899999999999988875 588
Q ss_pred cccCccEEecCCCcCCC-CCC-CCCCCCCccEEeccCccCCCccCccccCCCCC----cEEecCCCCCCCccCccccccc
Q 000943 626 PLSNLKIMRLCNAKNLI-STP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNL----VSVNLKDCTDLTTLPNKIAMIH 699 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L----~~L~L~~c~~l~~lp~~~~l~~ 699 (1214)
.+++|++|+|++|.... .+| .|+++++|++|++++|......+..++.+++| +.|++++|..-...|..+...+
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~ 201 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCc
Confidence 89999999999987654 334 48889999999999865433334566667777 7788887543333333334445
Q ss_pred ccceeccccc----------------------------------------------------------CCCCCccccCCC
Q 000943 700 LRKLVLSGCS----------------------------------------------------------KLKKFPEVVGSM 721 (1214)
Q Consensus 700 L~~L~Ls~c~----------------------------------------------------------~l~~lp~~~~~l 721 (1214)
|+.|++++|. .....|+.++.+
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l 281 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc
Confidence 6666665541 112344556667
Q ss_pred CcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCc
Q 000943 722 ECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRT 798 (1214)
Q Consensus 722 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~ 798 (1214)
++|++|++++|.+..+|..+..+ +|+.|++++|... .+|. ..+++|+.|++++|......+ +++|+.|++++|
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 77888888888888888777777 7888888777554 5554 355666666666665444333 455666666666
Q ss_pred cccCC---cccccccCCCcEEeecCCCCCCCC-------CcccccccCCcccccCC--CcCCCCCCCEEecCCCCCCCCC
Q 000943 799 VLRNP---ESSIFSMQNFEALSFLGWTLPQSL-------PSPYLRRSSHNVALRLP--SLLGLCSLTKLDLSDCNLGEGA 866 (1214)
Q Consensus 799 ~l~~~---~~~~~~l~~L~~L~l~~~~~~~~l-------~~~~l~~~~~~~~~~lp--~~~~l~~L~~L~Ls~~~l~~~~ 866 (1214)
.+... +..+..+++|+.|++++|.+.... ....+....+......| .+..+++|+.|+|++|.+. +.
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 436 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VA 436 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE-EC
T ss_pred ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc-cc
Confidence 55544 344555556666666555432211 11223333333333333 3566777888888887763 34
Q ss_pred cccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEeecCCcCCCcccCC---ccccceeeecCcc
Q 000943 867 IPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRLNGCA 930 (1214)
Q Consensus 867 lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l~~C~ 930 (1214)
.|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|..-...|.. .++|+.|++++|.
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 5666777778888888888775 57777777888888888777533222321 2577778887774
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=310.56 Aligned_cols=385 Identities=20% Similarity=0.175 Sum_probs=222.3
Q ss_pred ChhhhhcCcCeeeecccCccC-----CCCccCCCCCceEEEecCCCCCCC-CCCC-Ccccccccccccccccc-cccc--
Q 000943 554 SAKAFLKMTNLRMLTIGNVQL-----PEGLEFLPNELRFLEWHGYPFKSL-PSNF-QPENFFELNMCYSRMER-MWSG-- 623 (1214)
Q Consensus 554 ~~~~f~~~~~Lr~L~l~~~~l-----~~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~-l~~~-- 623 (1214)
.+..|.++++|++|++++|.. +..+..++ +|++|++++|.+..+ |..| .+.+|++|+|++|.+.. ++..
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 355678888888888887743 33344444 588888888888776 5556 78888888888888875 4444
Q ss_pred cccccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCccCCCccCccccCC--CCCcEEecCCCCCCCccCccc-c--
Q 000943 624 IKPLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCTRLRDIHPSLLLH--KNLVSVNLKDCTDLTTLPNKI-A-- 696 (1214)
Q Consensus 624 ~~~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~si~~l--~~L~~L~L~~c~~l~~lp~~~-~-- 696 (1214)
+.++++|++|+|++|......+ .|+++++|++|+|++|......+..+..+ ++|+.|+|++|......|..+ .
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence 7888888888888887665543 37888888888888865444344444433 444444444443322222211 1
Q ss_pred ------------------------------------------------------------------cccccceecccccC
Q 000943 697 ------------------------------------------------------------------MIHLRKLVLSGCSK 710 (1214)
Q Consensus 697 ------------------------------------------------------------------l~~L~~L~Ls~c~~ 710 (1214)
.++|+.|+|++|..
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 13445555555444
Q ss_pred CCCCccccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---
Q 000943 711 LKKFPEVVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG--- 786 (1214)
Q Consensus 711 l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--- 786 (1214)
....|..++.+++|+.|+|++|.+..+ |..+..+++|++|+|++|......|..+..+++|+.|++++|......+
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence 333444455555555555555555544 2345555555555555554444445555555555555555554322211
Q ss_pred --CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCC----cccccccCC-----------------------
Q 000943 787 --VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLP----SPYLRRSSH----------------------- 837 (1214)
Q Consensus 787 --l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~----~~~l~~~~~----------------------- 837 (1214)
+++|+.|++++|.++.++. +++|+.|.+++|.+..... ...+..+.|
T Consensus 359 ~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp CSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred cCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 4455555555555544332 3444444444444331100 011112222
Q ss_pred --cccccCCC--cCCCCCCCEEecCCCCCCC----CCcccccCCCCCCcEEeCCCCCCeecCc-ccCCCCCCCEEeecCC
Q 000943 838 --NVALRLPS--LLGLCSLTKLDLSDCNLGE----GAIPSDIGNLCSLKELCLSKNKFILLPE-SISCLSKLWIIDLEEC 908 (1214)
Q Consensus 838 --~~~~~lp~--~~~l~~L~~L~Ls~~~l~~----~~lp~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~C 908 (1214)
.+....+. +..+++|+.|+|++|.+.. +..|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 11111111 2223445555555554421 2233456778889999999998886664 5788999999999987
Q ss_pred cCCCcccC--CccccceeeecCcccccccccccccchh
Q 000943 909 KRLQSLSQ--LPSNIEEVRLNGCASLGTLSHALKLCKS 944 (1214)
Q Consensus 909 ~~L~~lp~--lp~sL~~L~l~~C~~L~~l~~~~~~~~~ 944 (1214)
.+..+|. ++++|+.|++++|.-....|..+..+..
T Consensus 515 -~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 515 -RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp -CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred -CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCE
Confidence 5666653 5589999999999766666665544433
No 19
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.95 E-value=7.8e-30 Score=257.07 Aligned_cols=122 Identities=26% Similarity=0.418 Sum_probs=114.7
Q ss_pred CCCccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHH
Q 000943 9 VSDWKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDE 88 (1214)
Q Consensus 9 ~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~E 88 (1214)
.+.++|||||||+++| ++.|++||+++|+++|++||+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 3468999999999999 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEEEEeecccccccccchhHHhhhhhHh
Q 000943 89 LVKIVELKSTNGQQQVIFPIFYDVEPTVVRKQTASFREAFSKHEE 133 (1214)
Q Consensus 89 l~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr~q~g~~~~~~~~~~~ 133 (1214)
|..|++|...+++ +||||||+|+|++||+|.|.|+++|+....
T Consensus 95 l~~~~~~~~~~~~--~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 95 LDGLFQLESSGRS--RILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHHTCCCTTSCC--CEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHHhcCCC--EEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 9999998877777 899999999999999999999999987654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=6.3e-27 Score=287.68 Aligned_cols=355 Identities=18% Similarity=0.166 Sum_probs=171.4
Q ss_pred cCeeeecccCccCCCC----ccCCCCCceEEEecCCCCCCC-CCCC-CcccccccccccccccccccccccccCccEEec
Q 000943 562 TNLRMLTIGNVQLPEG----LEFLPNELRFLEWHGYPFKSL-PSNF-QPENFFELNMCYSRMERMWSGIKPLSNLKIMRL 635 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~L 635 (1214)
++|+.|++++|.+.+. +..+ .+|++|++++|.++.+ |..| .+.+|++|++++|.+..+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 5666666666655432 2222 2466666666666665 3344 566666666666666666655 5666666666
Q ss_pred CCCcCCC-CCC-CCCCCCCccEEeccCccCCCccCccccCCCCC--cEEecCCCCC--CCccCccc--------------
Q 000943 636 CNAKNLI-STP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNL--VSVNLKDCTD--LTTLPNKI-------------- 695 (1214)
Q Consensus 636 s~~~~l~-~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L--~~L~L~~c~~--l~~lp~~~-------------- 695 (1214)
++|.... .+| .|+++++|++|+|++|. +.. ..+..+++| ++|++++|.. ....|..+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 6665543 232 36666666666666643 222 344555555 6666666544 22222222
Q ss_pred -------------ccccccceeccccc-------CCCCCccccCCCC---------------------------cceEEE
Q 000943 696 -------------AMIHLRKLVLSGCS-------KLKKFPEVVGSME---------------------------CLLELF 728 (1214)
Q Consensus 696 -------------~l~~L~~L~Ls~c~-------~l~~lp~~~~~l~---------------------------~L~~L~ 728 (1214)
.+++|+.|++++|. ....+| .++.++ +|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 13344444444432 000011 112222 344445
Q ss_pred eeCccCc-ccCccc-----CCCCCCcEEecCCCCCCCcCC-cccCCC---CCCCEEEecCCCCCCcc---CCCCcccccc
Q 000943 729 LDGTAIE-ELPSSI-----QLLNGLILLNLEKCTHLVGLP-STINDL---TSLITLNLSGCSKSKNV---GVESLEGLGS 795 (1214)
Q Consensus 729 L~~~~i~-~lp~~i-----~~l~~L~~L~L~~c~~l~~lp-~~l~~L---~sL~~L~ls~c~~l~~~---pl~~L~~L~l 795 (1214)
+++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+..+ ++|+.|++++|...... .+++|+.|++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 5555444 455554 5555555555555443 333 222222 34555555555433221 2455666666
Q ss_pred CCccccC-CcccccccCCCcEEeecCCCCCC--CC--------CcccccccCCcccccCCC--cCCCCCCCEEecCCCCC
Q 000943 796 SRTVLRN-PESSIFSMQNFEALSFLGWTLPQ--SL--------PSPYLRRSSHNVALRLPS--LLGLCSLTKLDLSDCNL 862 (1214)
Q Consensus 796 ~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~--~l--------~~~~l~~~~~~~~~~lp~--~~~l~~L~~L~Ls~~~l 862 (1214)
++|.++. .|..+..+++|+.|++++|.+.. .+ ....++++.|.+...+|. +..+++|+.|+|++|.+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 6666665 35556666666666666665542 10 001122222222222221 33445555555555554
Q ss_pred CCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCC----ccccceeeecCc
Q 000943 863 GEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQL----PSNIEEVRLNGC 929 (1214)
Q Consensus 863 ~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~l----p~sL~~L~l~~C 929 (1214)
. +.+|..+. ++|+.|+|++|.++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|++++|
T Consensus 412 ~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 412 T-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp C-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 2 22333222 4555555555555555554555555555555554 33344421 134445555444
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=6.5e-27 Score=289.65 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=137.7
Q ss_pred cCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCC-CC-Ccccccccccccccccccccc-cccccCccEEe
Q 000943 562 TNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMWSG-IKPLSNLKIMR 634 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~ 634 (1214)
++|++|++++|.+.+ .+..+ .+|++|++++|.+..+|. .| .+.+|++|++++|.+..++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999887643 34444 359999999999988874 45 788999999999999988765 88999999999
Q ss_pred cCCCcCCCC--CCCCCCCCCccEEeccCccCCCccC-ccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccC
Q 000943 635 LCNAKNLIS--TPDLTGLPNLEELDLRGCTRLRDIH-PSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSK 710 (1214)
Q Consensus 635 Ls~~~~l~~--~p~~~~l~~L~~L~L~~c~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~ 710 (1214)
|++|..... ++.++++++|++|++++|..+..+| ..+..+++|++|++++|......|..+ .+++|++|++++|..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999976542 3458889999999999987777777 478889999999999877666667666 788999999988754
Q ss_pred CCCCccc-cCCCCcceEEEeeCccCccc
Q 000943 711 LKKFPEV-VGSMECLLELFLDGTAIEEL 737 (1214)
Q Consensus 711 l~~lp~~-~~~l~~L~~L~L~~~~i~~l 737 (1214)
..+|.. ++.+++|++|++++|.+..+
T Consensus 185 -~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 185 -AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp -TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred -cccchhhHhhcccccEEEccCCccccc
Confidence 445544 35688899999999988765
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.4e-26 Score=288.29 Aligned_cols=380 Identities=19% Similarity=0.196 Sum_probs=285.4
Q ss_pred cChhhhhcCcCeeeecccCccCCCC----ccCCCCCceEEEecCCCCCCCCCC-C-Ccccccccccccccccccc-cccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPEG----LEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERMW-SGIK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~ 625 (1214)
+....|.++++|++|++++|.+.+. +..+ ..|++|++++|.+..+|.. | .+.+|++|++++|.+..++ ..+.
T Consensus 40 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 118 (680)
T 1ziw_A 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118 (680)
T ss_dssp CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTT
T ss_pred cCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcc
Confidence 4466799999999999999887543 2333 3699999999999999974 5 8999999999999999887 5689
Q ss_pred cccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCc-cc--cCCCCCcEEecCCCCCCCccCccc-cc---
Q 000943 626 PLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHP-SL--LLHKNLVSVNLKDCTDLTTLPNKI-AM--- 697 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~-si--~~l~~L~~L~L~~c~~l~~lp~~~-~l--- 697 (1214)
.+++|++|+|++|......|. +.++++|++|+|++|. +..+++ .+ ..+++|+.|++++|..-...|..+ .+
T Consensus 119 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 999999999999987666554 7899999999999975 455543 33 356899999999974433333322 22
Q ss_pred ------------------------ccccceecccccCCCCCccccCCCCc--ceEEEeeCccCcccC-cccCCCCCCcEE
Q 000943 698 ------------------------IHLRKLVLSGCSKLKKFPEVVGSMEC--LLELFLDGTAIEELP-SSIQLLNGLILL 750 (1214)
Q Consensus 698 ------------------------~~L~~L~Ls~c~~l~~lp~~~~~l~~--L~~L~L~~~~i~~lp-~~i~~l~~L~~L 750 (1214)
++|+.|++++|......|..+..++. |++|++++|.+..++ ..++.+++|+.|
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 56788888887766667777777765 999999999999775 568999999999
Q ss_pred ecCCCCCCCcCCcccCCCCCCCEEEecCCCCCC-----cc---------CCCCccccccCCccccCC-cccccccCCCcE
Q 000943 751 NLEKCTHLVGLPSTINDLTSLITLNLSGCSKSK-----NV---------GVESLEGLGSSRTVLRNP-ESSIFSMQNFEA 815 (1214)
Q Consensus 751 ~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~-----~~---------pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~ 815 (1214)
++++|......|..+.++++|+.|++++|.... .+ .+++|+.|++++|.+..+ +..+..+++|+.
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 999998888888899999999999999764332 11 267899999999999887 456889999999
Q ss_pred EeecCCCCCCC-C-----------CcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCcEEe
Q 000943 816 LSFLGWTLPQS-L-----------PSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELC 881 (1214)
Q Consensus 816 L~l~~~~~~~~-l-----------~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~ 881 (1214)
|++++|..... + ....+....|.+....|. +..+++|+.|+|++|.+.. .+| ..+..+++|++|+
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ-ELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE-ECCSGGGTTCTTCCEEE
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc-ccCcccccCcccccEEe
Confidence 99999864321 0 122344555655555454 6678888888888888742 233 5677888888888
Q ss_pred CCCCCCeecC-cccCCCCCCCEEeecCCcC--CCcccCC---ccccceeeecCcccccccc
Q 000943 882 LSKNKFILLP-ESISCLSKLWIIDLEECKR--LQSLSQL---PSNIEEVRLNGCASLGTLS 936 (1214)
Q Consensus 882 L~~n~l~~lp-~~i~~l~~L~~L~L~~C~~--L~~lp~l---p~sL~~L~l~~C~~L~~l~ 936 (1214)
|++|.+..++ ..+..+++|+.|++++|.. +..+|.. .++|+.|++++|. +..++
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~ 496 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIN 496 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCC
Confidence 8888877554 5667778888888877642 2233321 2577788887775 33443
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=300.95 Aligned_cols=377 Identities=18% Similarity=0.183 Sum_probs=274.0
Q ss_pred cChhhhhcCcCeeeecccCccC----CCCccCCCCCceEEEecCCCCCC-CCCC--C-Ccccccccccccccccccc--c
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQL----PEGLEFLPNELRFLEWHGYPFKS-LPSN--F-QPENFFELNMCYSRMERMW--S 622 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l----~~~~~~l~~~Lr~L~l~~~~l~~-lp~~--~-~~~~L~~L~L~~~~l~~l~--~ 622 (1214)
+.+.+|.++++|++|++++|.+ +..+..++ +|++|++++|.+.. +|.. | .+.+|++|++++|.+..++ .
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 142 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence 3466788888888888888765 33444444 48888888888765 4443 4 7788888888888887653 4
Q ss_pred ccccccCccEEecCCCcCCCCCC---------------------------CCCCCCC------ccEEeccCccCCCccCc
Q 000943 623 GIKPLSNLKIMRLCNAKNLISTP---------------------------DLTGLPN------LEELDLRGCTRLRDIHP 669 (1214)
Q Consensus 623 ~~~~L~~L~~L~Ls~~~~l~~~p---------------------------~~~~l~~------L~~L~L~~c~~l~~lp~ 669 (1214)
.+.++++|++|+|++|......+ .+..+++ |++|+|++|......+.
T Consensus 143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 57888888888888776433222 1222222 77777777633222222
Q ss_pred ccc------------------------------------C--CCCCcEEecCCCCCCCccCccc-ccccccceecccccC
Q 000943 670 SLL------------------------------------L--HKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSK 710 (1214)
Q Consensus 670 si~------------------------------------~--l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~ 710 (1214)
.+. . .++|+.|+|++|......|..+ .+++|+.|+|++|..
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence 111 1 2578888888865444444444 789999999999887
Q ss_pred CCCCccccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCC
Q 000943 711 LKKFPEVVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVES 789 (1214)
Q Consensus 711 l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~ 789 (1214)
....|..+..+++|++|+|++|.+..+ |..+..+++|+.|++++|......+..+..+++|++|++++|.......+++
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 382 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCS
T ss_pred CCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCC
Confidence 777788899999999999999999877 6689999999999999997665566678899999999999998665444566
Q ss_pred ccccccCCccccCCccc----------------------ccccCCCcEEeecCCCCCCCCC---------cccccccCCc
Q 000943 790 LEGLGSSRTVLRNPESS----------------------IFSMQNFEALSFLGWTLPQSLP---------SPYLRRSSHN 838 (1214)
Q Consensus 790 L~~L~l~~~~l~~~~~~----------------------~~~l~~L~~L~l~~~~~~~~l~---------~~~l~~~~~~ 838 (1214)
|+.|++++|.+..+|.. +..+++|+.|++++|.+....+ ...+.++.|.
T Consensus 383 L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred cchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 66666666666554432 3478999999999998864221 1234455555
Q ss_pred ccc-----cCC-CcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCC
Q 000943 839 VAL-----RLP-SLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQ 912 (1214)
Q Consensus 839 ~~~-----~lp-~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~ 912 (1214)
+.. ..+ .+.++++|+.|+|++|+++ +..|..+..+++|+.|+|++|+++.+|..... ++|+.|+|++|.--.
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred cccccccccchhhhcCcccccEEECCCCccc-ccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 432 222 2778899999999999985 45566789999999999999999988865544 899999999987666
Q ss_pred cccCCccccceeeecCcccc
Q 000943 913 SLSQLPSNIEEVRLNGCASL 932 (1214)
Q Consensus 913 ~lp~lp~sL~~L~l~~C~~L 932 (1214)
..|...++|+.|++++|+-.
T Consensus 541 ~~~~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 541 PNPDVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCSCCCSSCCEEEEEEECCC
T ss_pred CChhHhCCcCEEEecCCCcc
Confidence 56666679999999987644
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.4e-27 Score=291.16 Aligned_cols=349 Identities=20% Similarity=0.224 Sum_probs=226.1
Q ss_pred ChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCCC-C-Cccccccccccccccccc--ccccc
Q 000943 554 SAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERM--WSGIK 625 (1214)
Q Consensus 554 ~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l--~~~~~ 625 (1214)
.+..|.++++|++|++++|.+.. .+..++ +|++|++++|.+..+|.. | .+.+|++|++++|.+..+ |..+.
T Consensus 42 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred ChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 35678999999999999988643 344443 699999999999999875 4 889999999999999854 67799
Q ss_pred cccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc--cccccc
Q 000943 626 PLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLR 701 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~ 701 (1214)
.+++|++|++++|.....+| .|.++++|++|++++|......|..++.+++|++|++.+|. +..+|..+ .+++|+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVR 199 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBS
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhccccc
Confidence 99999999999998666655 58999999999999987666678888888888888888754 44555544 467778
Q ss_pred ceecccccCCCCC--c-cccCCC----------------------------CcceEEEeeCccCcccCc----------c
Q 000943 702 KLVLSGCSKLKKF--P-EVVGSM----------------------------ECLLELFLDGTAIEELPS----------S 740 (1214)
Q Consensus 702 ~L~Ls~c~~l~~l--p-~~~~~l----------------------------~~L~~L~L~~~~i~~lp~----------~ 740 (1214)
+|++++|...... | .....+ ++|+.|++++|.+..++. .
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 8887776543310 1 111122 233333333332221110 0
Q ss_pred --------------------------cCCCCCCcEEecCCCCCCCcCCccc-CCCCCCCEEEecCCCCCCcc--------
Q 000943 741 --------------------------IQLLNGLILLNLEKCTHLVGLPSTI-NDLTSLITLNLSGCSKSKNV-------- 785 (1214)
Q Consensus 741 --------------------------i~~l~~L~~L~L~~c~~l~~lp~~l-~~L~sL~~L~ls~c~~l~~~-------- 785 (1214)
...+.+|+.|++++|. +..+|..+ ..+++|++|++++|...+..
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence 0112456777777765 34666555 35777777777777765432
Q ss_pred CCCCccccccCCccccCCc---ccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCC
Q 000943 786 GVESLEGLGSSRTVLRNPE---SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCN 861 (1214)
Q Consensus 786 pl~~L~~L~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~ 861 (1214)
.+++|+.|++++|.++.++ ..+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-----------------MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-----------------CCSCCCCCTTCCEEECTTSC
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-----------------CChhhcccccccEEECCCCC
Confidence 1466777777777777664 346677777777777776542 121 3445566666666666
Q ss_pred CCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCC--ccccceeeecCcc
Q 000943 862 LGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQL--PSNIEEVRLNGCA 930 (1214)
Q Consensus 862 l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~l--p~sL~~L~l~~C~ 930 (1214)
+.. +|..+ .++|+.|+|++|+++.++ ..+++|+.|+|++| .++.+|.. .++|+.|++++|.
T Consensus 422 l~~--l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 422 IRV--VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp CSC--CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC
T ss_pred ccc--ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCc
Confidence 543 33322 245666666666655543 34556666666665 34455532 2556666666653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.4e-26 Score=279.48 Aligned_cols=339 Identities=19% Similarity=0.175 Sum_probs=265.9
Q ss_pred CCCCceEEEecCCCCCCC-CCCC-Cccccccccccccccc-cc-ccccccccCccEEecCCCcCCCCCC-CCCCCCCccE
Q 000943 581 LPNELRFLEWHGYPFKSL-PSNF-QPENFFELNMCYSRME-RM-WSGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEE 655 (1214)
Q Consensus 581 l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~-~l-~~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~ 655 (1214)
+|.+|++|++++|.++.+ |..| .+.+|++|++++|.+. .+ +..+..+++|++|+|++|......| .|+++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 667899999999998887 4455 7899999999999886 44 4568899999999999998766655 4888999999
Q ss_pred EeccCccCCCccCcc--ccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccCCC--CcceEEEe
Q 000943 656 LDLRGCTRLRDIHPS--LLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSM--ECLLELFL 729 (1214)
Q Consensus 656 L~L~~c~~l~~lp~s--i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l--~~L~~L~L 729 (1214)
|+|++|.....++.. +..+++|++|+|++|......|.. + .+++|++|++++|......|..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999997654444544 888999999999997655544654 3 78999999999988777777777665 68999999
Q ss_pred eCccCcccCcc---------cCCCCCCcEEecCCCCCCCcCCcccCC---CCCCCEEEecCCCCCCcc------------
Q 000943 730 DGTAIEELPSS---------IQLLNGLILLNLEKCTHLVGLPSTIND---LTSLITLNLSGCSKSKNV------------ 785 (1214)
Q Consensus 730 ~~~~i~~lp~~---------i~~l~~L~~L~L~~c~~l~~lp~~l~~---L~sL~~L~ls~c~~l~~~------------ 785 (1214)
++|.+..++.. +..+++|+.|++++|......|..+.. .++|+.|++++|......
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 99998877643 345688999999999877766665544 378999999888544321
Q ss_pred -----CCCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCC
Q 000943 786 -----GVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSD 859 (1214)
Q Consensus 786 -----pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~ 859 (1214)
...+|+.|++++|.+... |..+..+++|+.|++++|.+....+ ..+.++++|+.|+|++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD---------------NAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT---------------TTTTTCTTCCEEECCS
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh---------------hHhcCcccCCEEECCC
Confidence 136899999999998876 6678899999999999987753211 1367789999999999
Q ss_pred CCCCCCCcccccCCCCCCcEEeCCCCCCeec-CcccCCCCCCCEEeecCCcCCCcccC----CccccceeeecCcccccc
Q 000943 860 CNLGEGAIPSDIGNLCSLKELCLSKNKFILL-PESISCLSKLWIIDLEECKRLQSLSQ----LPSNIEEVRLNGCASLGT 934 (1214)
Q Consensus 860 ~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~~L~~lp~----lp~sL~~L~l~~C~~L~~ 934 (1214)
|.+. +..|..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++| .++.+|. -.++|+.|++++|+--..
T Consensus 333 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 333 NFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp SCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccC
Confidence 9984 34577889999999999999999976 678999999999999996 4666653 126899999999875544
Q ss_pred cc
Q 000943 935 LS 936 (1214)
Q Consensus 935 l~ 936 (1214)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2e-26 Score=267.69 Aligned_cols=295 Identities=21% Similarity=0.234 Sum_probs=153.4
Q ss_pred ceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCC
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l 664 (1214)
|+.|+++++.+..+|....+.+|++|++++|.+..++. +..+++|++|++++|. +..++.+.++++|++|+|++|. +
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~-i 122 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN-I 122 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC-C
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc-c
Confidence 55555555555555543355666666666666666655 6666677777776664 3334556666677777776643 4
Q ss_pred CccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCC
Q 000943 665 RDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLL 744 (1214)
Q Consensus 665 ~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 744 (1214)
..++. +..+++|++|++++|..+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 198 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIEDISP-LASL 198 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGC
T ss_pred cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccccccc-ccCC
Confidence 44444 6666666666666666666555544666666666666543 22332 5566666666666666666554 5566
Q ss_pred CCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCccccCCcccccccCCCcEEeecCC
Q 000943 745 NGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGW 821 (1214)
Q Consensus 745 ~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~ 821 (1214)
++|+.|++++|......+ +..+++|++|++++|......+ +++|+.|++++|.++.+ ..+..+++|+.|++++|
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSS
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCC
Confidence 666666666654433222 5555666666666554332211 23333333333333333 12334444444444444
Q ss_pred CCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCC
Q 000943 822 TLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLW 901 (1214)
Q Consensus 822 ~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~ 901 (1214)
.+.. ++.+..+++|+.|+|++|.+. +..|..++.+++|+.|+|++|.++.++. +..+++|+
T Consensus 276 ~l~~-----------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 276 QISD-----------------ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD 336 (347)
T ss_dssp CCCC-----------------CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred ccCC-----------------ChhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence 3321 112333444444444444442 1233334444444444444444444433 44444444
Q ss_pred EEeecCC
Q 000943 902 IIDLEEC 908 (1214)
Q Consensus 902 ~L~L~~C 908 (1214)
.|++++|
T Consensus 337 ~L~l~~N 343 (347)
T 4fmz_A 337 SADFANQ 343 (347)
T ss_dssp EESSSCC
T ss_pred eeehhhh
Confidence 4444443
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.3e-25 Score=285.41 Aligned_cols=382 Identities=19% Similarity=0.161 Sum_probs=236.0
Q ss_pred cChhhhhcCcCeeeecccCccCCCC----ccCCCCCceEEEecCCCCCCCCC-CC-Ccccccccccccccccccc-cccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPEG----LEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMW-SGIK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~ 625 (1214)
..+.+|.++++|++|++++|.+... +..+ .+|++|++++|.+..+|. .| .+.+|++|++++|.+...+ ..+.
T Consensus 64 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 142 (680)
T 1ziw_A 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142 (680)
T ss_dssp CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS
T ss_pred cCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc
Confidence 4467788999999999988876432 3333 469999999999888874 45 7889999999999888654 4578
Q ss_pred cccCccEEecCCCcCCCCCCC---CCCCCCccEEeccCccCCCccCccccCC---------------------------C
Q 000943 626 PLSNLKIMRLCNAKNLISTPD---LTGLPNLEELDLRGCTRLRDIHPSLLLH---------------------------K 675 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~~p~---~~~l~~L~~L~L~~c~~l~~lp~si~~l---------------------------~ 675 (1214)
.+++|++|++++|......+. +..+++|++|++++|......|..+..+ +
T Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 888999999988875544433 3356788888888864333333333322 3
Q ss_pred CCcEEecCCCCCCCccCccc-ccc--cccceecccccCCCCCccccCCCCcceEEEeeCccCcccC-c------------
Q 000943 676 NLVSVNLKDCTDLTTLPNKI-AMI--HLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP-S------------ 739 (1214)
Q Consensus 676 ~L~~L~L~~c~~l~~lp~~~-~l~--~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~------------ 739 (1214)
+|+.|++++|......|..+ .++ +|+.|+|++|......|..++.+++|++|++++|.+..++ .
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 44555555543333233333 232 3666666665544444455566666666666666555332 2
Q ss_pred ---------------------ccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCC-CccC--------CCC
Q 000943 740 ---------------------SIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKS-KNVG--------VES 789 (1214)
Q Consensus 740 ---------------------~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l-~~~p--------l~~ 789 (1214)
.+..+++|++|++++|......|..+.++++|++|++++|... ..++ ..+
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 3444555666666665555555556667777777777766421 1111 246
Q ss_pred ccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCc---------ccccccCCcccccCCC-cCCCCCCCEEecC
Q 000943 790 LEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPS---------PYLRRSSHNVALRLPS-LLGLCSLTKLDLS 858 (1214)
Q Consensus 790 L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~---------~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls 858 (1214)
|+.|++++|.+..+ |..+..+++|+.|++++|.+.+.++. ..+.++.|......+. +..+++|+.|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 77777777777765 55677888888888888876543321 2233444444333332 5556777777777
Q ss_pred CCCCCC-CCcccccCCCCCCcEEeCCCCCCeecCc-ccCCCCCCCEEeecCCcCCCccc-----CC-------cccccee
Q 000943 859 DCNLGE-GAIPSDIGNLCSLKELCLSKNKFILLPE-SISCLSKLWIIDLEECKRLQSLS-----QL-------PSNIEEV 924 (1214)
Q Consensus 859 ~~~l~~-~~lp~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~C~~L~~lp-----~l-------p~sL~~L 924 (1214)
+|.+.. +.+|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|. +..++ .. .++|+.|
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEE
Confidence 776532 3466677777777777777777776654 46677777777777764 33321 11 1567777
Q ss_pred eecCccccccccc
Q 000943 925 RLNGCASLGTLSH 937 (1214)
Q Consensus 925 ~l~~C~~L~~l~~ 937 (1214)
++++|. ++.+|.
T Consensus 542 ~L~~N~-l~~i~~ 553 (680)
T 1ziw_A 542 NLESNG-FDEIPV 553 (680)
T ss_dssp ECCSSC-CCCCCT
T ss_pred ECCCCC-CCCCCH
Confidence 777663 445553
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.1e-26 Score=274.62 Aligned_cols=336 Identities=20% Similarity=0.271 Sum_probs=222.6
Q ss_pred CcCeeeecccCccCCC--CccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCC
Q 000943 561 MTNLRMLTIGNVQLPE--GLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNA 638 (1214)
Q Consensus 561 ~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~ 638 (1214)
+++|+.|++.++.+.. ++..+ .+|++|++++|.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 4556666666655422 22333 3577777777777777763367777777777777777665 777777777777777
Q ss_pred cCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCcccc
Q 000943 639 KNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVV 718 (1214)
Q Consensus 639 ~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~ 718 (1214)
... .++.+.++++|++|++++|. +..++ .+..+++|++|++.+ .+..++....+++|+.|++++|. +..++ .+
T Consensus 123 ~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l 195 (466)
T 1o6v_A 123 QIT-DIDPLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-VSDIS-VL 195 (466)
T ss_dssp CCC-CCGGGTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred CCC-CChHHcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-CCCCh-hh
Confidence 533 34447777777777777753 44444 467777777777753 34444444467777777777765 33343 36
Q ss_pred CCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCcccccc
Q 000943 719 GSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGS 795 (1214)
Q Consensus 719 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l 795 (1214)
..+++|++|++++|.+..++. ++.+++|+.|++++|... .++ .+..+++|+.|++++|......+ +++|+.|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEEC
Confidence 677777777777777776654 666777777777776543 233 46677777777777776554433 566777777
Q ss_pred CCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCC
Q 000943 796 SRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLC 875 (1214)
Q Consensus 796 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 875 (1214)
++|.+..++. +..+++|+.|++++|.+.. ++.+..+++|+.|+|++|++.. ++. +..++
T Consensus 273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~ 331 (466)
T 1o6v_A 273 GANQISNISP-LAGLTALTNLELNENQLED-----------------ISPISNLKNLTYLTLYFNNISD--ISP-VSSLT 331 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCSC-----------------CGGGGGCTTCSEEECCSSCCSC--CGG-GGGCT
T ss_pred CCCccCcccc-ccCCCccCeEEcCCCcccC-----------------chhhcCCCCCCEEECcCCcCCC--chh-hccCc
Confidence 7777777655 6777888888887776543 2235667788888888887754 322 66778
Q ss_pred CCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCccc-CCccccceeeecCcc
Q 000943 876 SLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLS-QLPSNIEEVRLNGCA 930 (1214)
Q Consensus 876 sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp-~lp~sL~~L~l~~C~ 930 (1214)
+|+.|++++|.++.++ .+..+++|+.|++++|+.-...| .-.++|+.|++++|+
T Consensus 332 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 8888888888777764 67778888888888775332222 111567777777775
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=285.03 Aligned_cols=333 Identities=18% Similarity=0.196 Sum_probs=250.6
Q ss_pred cChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccc--ccccccc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMER--MWSGIKP 626 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~--l~~~~~~ 626 (1214)
..+..|.++++|++|++++|.+.+ .+..++ +|++|++++|.++.+|.. .+.+|++|++++|.+.. +|..+..
T Consensus 36 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 36 LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred cChhhccccccccEEecCCCccCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhcc
Confidence 456789999999999999998754 344444 699999999999999988 89999999999999986 5688999
Q ss_pred ccCccEEecCCCcCCCCCCCCCCCCCc--cEEeccCccC--CCccCcccc--------------------------CCCC
Q 000943 627 LSNLKIMRLCNAKNLISTPDLTGLPNL--EELDLRGCTR--LRDIHPSLL--------------------------LHKN 676 (1214)
Q Consensus 627 L~~L~~L~Ls~~~~l~~~p~~~~l~~L--~~L~L~~c~~--l~~lp~si~--------------------------~l~~ 676 (1214)
+++|++|+|++|.... ..+..+++| ++|+|++|.. ....|..+. .+++
T Consensus 114 l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp CTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred CCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence 9999999999987544 457777777 9999998765 344444443 3667
Q ss_pred CcEEecCCCC-------C------CCccCc---------------------ccccccccceecccccCCCCCcccc----
Q 000943 677 LVSVNLKDCT-------D------LTTLPN---------------------KIAMIHLRKLVLSGCSKLKKFPEVV---- 718 (1214)
Q Consensus 677 L~~L~L~~c~-------~------l~~lp~---------------------~~~l~~L~~L~Ls~c~~l~~lp~~~---- 718 (1214)
|+.|++++|. . +..++. ....++|++|++++|...+.+|..+
T Consensus 192 L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 7777777654 0 111110 1113478888888887766888887
Q ss_pred -CCCCcceEEEeeCccCcccC-ccc-------------------------CCCCCCcEEecCCCCCCCcCCcccCCCCCC
Q 000943 719 -GSMECLLELFLDGTAIEELP-SSI-------------------------QLLNGLILLNLEKCTHLVGLPSTINDLTSL 771 (1214)
Q Consensus 719 -~~l~~L~~L~L~~~~i~~lp-~~i-------------------------~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL 771 (1214)
+++++|+.|++++|.+ .+| .++ ..+++|++|++++|.....+|..+.++++|
T Consensus 272 ~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp SCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred cccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 8888888888888877 666 222 456777777777776666667777777777
Q ss_pred CEEEecCCCCCC--ccC-----CCCccccccCCccccC-Cccc-ccccCCCcEEeecCCCCCCCCCcccccccCCccccc
Q 000943 772 ITLNLSGCSKSK--NVG-----VESLEGLGSSRTVLRN-PESS-IFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALR 842 (1214)
Q Consensus 772 ~~L~ls~c~~l~--~~p-----l~~L~~L~l~~~~l~~-~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~ 842 (1214)
+.|++++|.... .+| +++|+.|++++|.+.. +|.. +..+++|+.|++++|.+.+.
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------- 414 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT---------------- 414 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG----------------
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc----------------
Confidence 777777776654 222 5677777777777776 5543 56677777777777765432
Q ss_pred CCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcc-cCCCCCCCEEeecCCc
Q 000943 843 LPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPES-ISCLSKLWIIDLEECK 909 (1214)
Q Consensus 843 lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~C~ 909 (1214)
+|... .++|+.|+|++|++. .+|..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+
T Consensus 415 ~~~~l-~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 415 IFRCL-PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGGSC-CTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhh-cccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 22211 168999999999996 4999888999999999999999999986 8899999999999986
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.5e-26 Score=273.33 Aligned_cols=318 Identities=21% Similarity=0.257 Sum_probs=267.2
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
+++.|++.++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|......+ ++++++|++|+|++| .
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-Q 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-C
Confidence 589999999999999975588999999999999999987 9999999999999997655544 999999999999996 5
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCC
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQL 743 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 743 (1214)
+..++. +..+++|++|++++| .+..+|....+++|+.|++++ .+..++. ++++++|++|++++|.+..++ .+..
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~ 197 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKVSDIS-VLAK 197 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred CCCChH-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcCCCCh-hhcc
Confidence 666665 899999999999996 466777655899999999974 3444444 889999999999999999886 4889
Q ss_pred CCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc---CCCCccccccCCccccCCcccccccCCCcEEeecC
Q 000943 744 LNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV---GVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLG 820 (1214)
Q Consensus 744 l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~---pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~ 820 (1214)
+++|+.|++++|......| ++.+++|+.|++++|.....- .+++|+.|++++|.+...+. +..+++|+.|++++
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence 9999999999987665544 778999999999999765421 27899999999999998876 88999999999999
Q ss_pred CCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCC
Q 000943 821 WTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKL 900 (1214)
Q Consensus 821 ~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L 900 (1214)
|.+.. ++.+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.++.++. +..+++|
T Consensus 275 n~l~~-----------------~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 333 (466)
T 1o6v_A 275 NQISN-----------------ISPLAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKL 333 (466)
T ss_dssp SCCCC-----------------CGGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred CccCc-----------------cccccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-hccCccC
Confidence 97753 2336788999999999999864 443 7899999999999999998775 7899999
Q ss_pred CEEeecCCcCCCcccCCc--cccceeeecCccccccc
Q 000943 901 WIIDLEECKRLQSLSQLP--SNIEEVRLNGCASLGTL 935 (1214)
Q Consensus 901 ~~L~L~~C~~L~~lp~lp--~sL~~L~l~~C~~L~~l 935 (1214)
+.|++++| .+..++.+. ++|+.|++++|......
T Consensus 334 ~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 334 QRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred CEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccc
Confidence 99999998 566665443 78999999999654433
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=282.39 Aligned_cols=377 Identities=17% Similarity=0.142 Sum_probs=288.6
Q ss_pred cCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCCC-C-Ccccccccccccccccccc-cccccccCccEEe
Q 000943 562 TNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERMW-SGIKPLSNLKIMR 634 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~ 634 (1214)
++++.|++++|.+.. .+..+ .+|++|++++|.+..+|.. | .+.+|++|++++|.+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 579999999987643 33344 3599999999999988754 5 7899999999999999886 5689999999999
Q ss_pred cCCCcCCCCCC-CCCCCCCccEEeccCccCCC-ccCccccCCCCCcEEecCCCCCCCcc-Cccc-ccccc----cceecc
Q 000943 635 LCNAKNLISTP-DLTGLPNLEELDLRGCTRLR-DIHPSLLLHKNLVSVNLKDCTDLTTL-PNKI-AMIHL----RKLVLS 706 (1214)
Q Consensus 635 Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~-~lp~si~~l~~L~~L~L~~c~~l~~l-p~~~-~l~~L----~~L~Ls 706 (1214)
+++|......+ .++++++|++|+|++|.... .+|..++++++|++|++++|. ++.+ |..+ .+.+| +.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 99997554443 48999999999999975443 478899999999999999965 4444 4444 67777 789999
Q ss_pred cccCCCCCccccCCCCcceEEEeeCccC----------------------------------------------------
Q 000943 707 GCSKLKKFPEVVGSMECLLELFLDGTAI---------------------------------------------------- 734 (1214)
Q Consensus 707 ~c~~l~~lp~~~~~l~~L~~L~L~~~~i---------------------------------------------------- 734 (1214)
+|......|..+..+ +|++|++++|..
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 987655555555554 788888877621
Q ss_pred -------cccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCccccCCc
Q 000943 735 -------EELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRTVLRNPE 804 (1214)
Q Consensus 735 -------~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~~l~~~~ 804 (1214)
..+|..+..+++|+.|++++|.. ..+|..+..+ +|++|++++|... .+| +++|+.|++++|.+....
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence 12345566788999999998864 4688888888 9999999998765 444 778999999999877654
Q ss_pred ccccccCCCcEEeecCCCCCCCC----------CcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCC
Q 000943 805 SSIFSMQNFEALSFLGWTLPQSL----------PSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNL 874 (1214)
Q Consensus 805 ~~~~~l~~L~~L~l~~~~~~~~l----------~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l 874 (1214)
.. ..+++|+.|++++|.+.... ....+.++.+......+.+..+++|+.|+|++|.+.....+..+..+
T Consensus 342 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 342 SE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 43 78999999999999875321 12345556666555444588899999999999998542223578899
Q ss_pred CCCcEEeCCCCCCee-cCcccCCCCCCCEEeecCCcCC-CcccCC---ccccceeeecCcccccccccccccchhh
Q 000943 875 CSLKELCLSKNKFIL-LPESISCLSKLWIIDLEECKRL-QSLSQL---PSNIEEVRLNGCASLGTLSHALKLCKSI 945 (1214)
Q Consensus 875 ~sL~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~C~~L-~~lp~l---p~sL~~L~l~~C~~L~~l~~~~~~~~~l 945 (1214)
++|+.|+|++|.+.. .|..+..+++|+.|+|++|... ..+|.. .++|+.|++++|..-...|..+..+.++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 999999999999985 5678899999999999999744 245532 3799999999997655556666655544
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=278.97 Aligned_cols=147 Identities=20% Similarity=0.173 Sum_probs=120.6
Q ss_pred CCCCCCCEEEecCCCCCCccC-----CCCccccccCCccccCCc---ccccccCCCcEEeecCCCCCCCCCcccccccCC
Q 000943 766 NDLTSLITLNLSGCSKSKNVG-----VESLEGLGSSRTVLRNPE---SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSH 837 (1214)
Q Consensus 766 ~~L~sL~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~~~~---~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~ 837 (1214)
..+++|++|++++|......| +++|+.|++++|.++.++ ..+..+++|+.|++++|.+...++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-------- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS--------
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh--------
Confidence 678999999999998877554 789999999999999764 5688999999999999987653221
Q ss_pred cccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCC
Q 000943 838 NVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQL 917 (1214)
Q Consensus 838 ~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~l 917 (1214)
..+..+++|+.|+|++|.+. +.+|..+. ++|+.|+|++|.++.+|..+..+++|+.|+|++| .++.+|..
T Consensus 422 ------~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 422 ------RTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp ------CCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred ------hhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 12667899999999999985 44555443 7999999999999999998889999999999997 46677752
Q ss_pred ----ccccceeeecCcc
Q 000943 918 ----PSNIEEVRLNGCA 930 (1214)
Q Consensus 918 ----p~sL~~L~l~~C~ 930 (1214)
.++|+.|++++|+
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 2688899999886
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.5e-25 Score=260.20 Aligned_cols=297 Identities=18% Similarity=0.231 Sum_probs=250.0
Q ss_pred CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 603 QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
.+++|+.|+++++.+..++. +..+++|++|++++|... .++.+.++++|++|+|++| .+..++ .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEEC
Confidence 57889999999999998864 889999999999999654 4555999999999999997 566664 6899999999999
Q ss_pred CCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCC
Q 000943 683 KDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLP 762 (1214)
Q Consensus 683 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 762 (1214)
++| .+..+|....+++|++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|... .++
T Consensus 118 ~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~~ 193 (347)
T 4fmz_A 118 NED-NISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-DIS 193 (347)
T ss_dssp TTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-CCG
T ss_pred cCC-cccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-ccc
Confidence 995 467777755899999999999987777665 8999999999999999998876 889999999999998654 444
Q ss_pred cccCCCCCCCEEEecCCCCCCccC---CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcc
Q 000943 763 STINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNV 839 (1214)
Q Consensus 763 ~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~ 839 (1214)
. +..+++|+.|++++|......+ +++|+.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------- 257 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-------------- 257 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--------------
T ss_pred c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC--------------
Confidence 4 8889999999999998765443 7889999999999998877 8899999999999987653
Q ss_pred cccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeec-CcccCCCCCCCEEeecCCcCCCcccCC-
Q 000943 840 ALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILL-PESISCLSKLWIIDLEECKRLQSLSQL- 917 (1214)
Q Consensus 840 ~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~~L~~lp~l- 917 (1214)
++.+..+++|+.|++++|.+.. + ..+..+++|+.|+|++|.++.. |..+..+++|+.|+|++|+ +..++.+
T Consensus 258 ---~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~ 330 (347)
T 4fmz_A 258 ---INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLA 330 (347)
T ss_dssp ---CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGG
T ss_pred ---ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChh
Confidence 2457788999999999999865 4 3578899999999999998854 4678899999999999987 5555433
Q ss_pred -ccccceeeecCcc
Q 000943 918 -PSNIEEVRLNGCA 930 (1214)
Q Consensus 918 -p~sL~~L~l~~C~ 930 (1214)
.++|+.|++++|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 2788999998885
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=270.98 Aligned_cols=305 Identities=18% Similarity=0.200 Sum_probs=196.7
Q ss_pred EEEecCCCCCCCCCCCCcccccccccccccccccc-cccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCC
Q 000943 587 FLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 587 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l 664 (1214)
.++.++..++.+|..+ +.+++.|+|++|++..++ ..+..+++|++|+|++|......| .|.++++|++|+|++| .+
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RL 92 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cC
Confidence 4555555566666544 346666666666666553 446667777777777665544433 3666777777777664 35
Q ss_pred CccCcc-ccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc-cc
Q 000943 665 RDIHPS-LLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-SI 741 (1214)
Q Consensus 665 ~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i 741 (1214)
..+|.. +..+++|++|+|++|......|..+ .+++|++|+|++|......|..+..+++|++|++++|.+..+|. .+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 555543 4566777777777654433334444 56677777777765555555667777777777777777776664 36
Q ss_pred CCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC-----CCCccccccCCccccCCc-ccccccCCCcE
Q 000943 742 QLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG-----VESLEGLGSSRTVLRNPE-SSIFSMQNFEA 815 (1214)
Q Consensus 742 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~ 815 (1214)
..+++|+.|+|++|......+..+..+++|+.|++++|.....+| ..+|+.|++++|.++.+| ..+..+++|+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 677777777777776665555667777777777777777666554 235666666666666665 35667777777
Q ss_pred EeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCc-cc
Q 000943 816 LSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPE-SI 894 (1214)
Q Consensus 816 L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~-~i 894 (1214)
|++++|.+.... ...+..+++|+.|+|++|++. +..|..+..+++|+.|+|++|.++.+|. .+
T Consensus 253 L~Ls~n~l~~~~---------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 253 LNLSYNPISTIE---------------GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp EECCSSCCCEEC---------------TTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred eECCCCcCCccC---------------hhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 777777654211 012556777777888777774 3346667777778888887777777764 45
Q ss_pred CCCCCCCEEeecCCc
Q 000943 895 SCLSKLWIIDLEECK 909 (1214)
Q Consensus 895 ~~l~~L~~L~L~~C~ 909 (1214)
..+++|+.|+|++|+
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 667777777777764
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6.4e-25 Score=263.53 Aligned_cols=332 Identities=21% Similarity=0.231 Sum_probs=230.9
Q ss_pred hhhhhcCcCeeeecccCccC----CCCccCCCC------------CceEEEecCCCCCCCCCCCCccccccccccccccc
Q 000943 555 AKAFLKMTNLRMLTIGNVQL----PEGLEFLPN------------ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRME 618 (1214)
Q Consensus 555 ~~~f~~~~~Lr~L~l~~~~l----~~~~~~l~~------------~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~ 618 (1214)
+..+.++++|++|+++++.+ |..+..+.+ .+++|+++++.++.+|.. +.+|++|++++|.+.
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC
Confidence 45688999999999988754 444444332 368999999999999884 589999999999999
Q ss_pred ccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccc
Q 000943 619 RMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMI 698 (1214)
Q Consensus 619 ~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~ 698 (1214)
.+|.. +.+|+.|++++|... .+|.+ .++|++|++++| .+..+| +++.+++|++|++++| .++.+|... .
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~--~ 173 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP--P 173 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC--T
T ss_pred ccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc--c
Confidence 98854 478999999998543 34432 268999999996 456687 6999999999999996 566777643 5
Q ss_pred cccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecC
Q 000943 699 HLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSG 778 (1214)
Q Consensus 699 ~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~ 778 (1214)
+|++|++++|. +..+| .++++++|++|++++|.+..+|... ++|+.|++++|... .+|. ++.+++|++|++++
T Consensus 174 ~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 174 SLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp TCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCS
T ss_pred cccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCC
Confidence 89999999975 45577 5889999999999999999888643 58999999998654 7884 88999999999999
Q ss_pred CCCCCccC--CCCccccccCCccccCCcccccccCCCcEEeecCCCCCC--CCC--cccccccCCcccccCCCcCCC-CC
Q 000943 779 CSKSKNVG--VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQ--SLP--SPYLRRSSHNVALRLPSLLGL-CS 851 (1214)
Q Consensus 779 c~~l~~~p--l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~l~--~~~l~~~~~~~~~~lp~~~~l-~~ 851 (1214)
|.... +| +.+|+.|++++|.++.+|.. +++|+.|++++|.+.+ ..+ ...+....|.+.. +..+ ++
T Consensus 247 N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~----i~~~~~~ 318 (454)
T 1jl5_A 247 NLLKT-LPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS----LCDLPPS 318 (454)
T ss_dssp SCCSS-CCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----ECCCCTT
T ss_pred CcCCc-ccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc----ccCCcCc
Confidence 87654 33 57899999999999988764 4789999999987764 211 1222233332221 1122 35
Q ss_pred CCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCCccccce
Q 000943 852 LTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQLPSNIEE 923 (1214)
Q Consensus 852 L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp~sL~~ 923 (1214)
|+.|++++|++.. +|.. +++|+.|++++|.++.+|. .+++|++|++++| .+..+|.+|.++..
T Consensus 319 L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 319 LEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVED 381 (454)
T ss_dssp CCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCE
T ss_pred CCEEECCCCcccc--cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-CCCcCCCChHHHHh
Confidence 6666666666543 4432 3556666666666665554 3556666666654 34444444444333
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.8e-25 Score=263.92 Aligned_cols=339 Identities=22% Similarity=0.255 Sum_probs=166.8
Q ss_pred eeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCC
Q 000943 564 LRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLIS 643 (1214)
Q Consensus 564 Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~ 643 (1214)
++.|+++++.+.+ +..++.+|++|++++|.++.+|.. +.+|++|++++|.+..++.. .++|++|++++|....
T Consensus 73 l~~L~l~~~~l~~-lp~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp CSEEECTTSCCSC-CCSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred CCEEEecCCcccc-CCCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-
Confidence 4556666655433 222445566666666666666643 25566666666666554432 1456666666664432
Q ss_pred CCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCc
Q 000943 644 TPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMEC 723 (1214)
Q Consensus 644 ~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~ 723 (1214)
+|.++++++|++|++++| .+..+|..+ .+|++|++++| .++.+|....+++|++|++++|. +..+|... ++
T Consensus 146 lp~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~ 216 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLP---LS 216 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCC---TT
T ss_pred CcccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCc---Cc
Confidence 455666666666666664 344444332 35666666654 34445543356666666666543 22344322 34
Q ss_pred ceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC--CCCccccccCCcccc
Q 000943 724 LLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG--VESLEGLGSSRTVLR 801 (1214)
Q Consensus 724 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--l~~L~~L~l~~~~l~ 801 (1214)
|++|++++|.+..+|. ++.+++|+.|++++|... .+|.. +++|+.|++++|.... +| +++|+.|++++|.++
T Consensus 217 L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp CCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred ccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcccCcCCEEECcCCccC
Confidence 6666666666665553 555666666666655332 34431 3556666666555333 22 345556666665555
Q ss_pred CCcccccccCCCcEEeecCCCCCC--CC--CcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCC
Q 000943 802 NPESSIFSMQNFEALSFLGWTLPQ--SL--PSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSL 877 (1214)
Q Consensus 802 ~~~~~~~~l~~L~~L~l~~~~~~~--~l--~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL 877 (1214)
.+|.. .++|+.|++++|.+.. .. ....++.+.|.+.. +|.. +++|+.|+|++|.+.. +|. .+++|
T Consensus 291 ~l~~~---~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~~--lp~---~l~~L 359 (454)
T 1jl5_A 291 GLSEL---PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASFNHLAE--VPE---LPQNL 359 (454)
T ss_dssp EESCC---CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC--CCC---CCTTC
T ss_pred cccCc---CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc--CCcCCEEECCCCcccc--ccc---hhhhc
Confidence 44321 1455555555554432 11 11223333443332 4432 5899999999999964 777 57899
Q ss_pred cEEeCCCCCCee---cCcccCCC-------------CCCCEEeecCCcCCCcccCCccccceeeecCcccccccc
Q 000943 878 KELCLSKNKFIL---LPESISCL-------------SKLWIIDLEECKRLQSLSQLPSNIEEVRLNGCASLGTLS 936 (1214)
Q Consensus 878 ~~L~L~~n~l~~---lp~~i~~l-------------~~L~~L~L~~C~~L~~lp~lp~sL~~L~l~~C~~L~~l~ 936 (1214)
+.|+|++|.++. +|.++..+ ++|+.|++++| .++.+|.+|++++.|.+.+|..-..++
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccccchhhHhheeCcCcccCCccc
Confidence 999999999886 55666655 56777777664 355556666667666666665444333
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=9.1e-25 Score=270.93 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=264.0
Q ss_pred CcCeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCC-CC-Cccccccccccccccccc-ccccccccCccEEecCC
Q 000943 561 MTNLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCN 637 (1214)
Q Consensus 561 ~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~ 637 (1214)
+...++++++++.+..-+..++..|+.|++++|.+..+|. .| .+.+|++|++++|.+..+ |..+..+++|++|+|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4445889999998877666677899999999999999985 55 889999999999999988 56699999999999999
Q ss_pred CcCCCCCCCCCCCCCccEEeccCccCCCcc--CccccCCCCCcEEecCCCCCCCccCcccccccc--cceecccccC--C
Q 000943 638 AKNLISTPDLTGLPNLEELDLRGCTRLRDI--HPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHL--RKLVLSGCSK--L 711 (1214)
Q Consensus 638 ~~~l~~~p~~~~l~~L~~L~L~~c~~l~~l--p~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~Ls~c~~--l 711 (1214)
|... .+|.. .+++|++|+|++|. +..+ |..++.+++|++|+|++|. +... ....+++| +.|++++|.. .
T Consensus 110 N~l~-~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQL-DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTT-TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc-ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccC-chhhhhhceeeEEEeeccccccc
Confidence 9865 56655 89999999999975 5554 4789999999999999964 3332 12245555 9999999876 4
Q ss_pred CCCccccC--------------------------CCCcceEEEeeCccC-------------------------------
Q 000943 712 KKFPEVVG--------------------------SMECLLELFLDGTAI------------------------------- 734 (1214)
Q Consensus 712 ~~lp~~~~--------------------------~l~~L~~L~L~~~~i------------------------------- 734 (1214)
...|..+. .+++|+.|++++|..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 44444333 345666666666531
Q ss_pred --cccCcccCCCCCCcEEecCCCCCCCcCCccc-----CCC--------------------------CCCCEEEecCCCC
Q 000943 735 --EELPSSIQLLNGLILLNLEKCTHLVGLPSTI-----NDL--------------------------TSLITLNLSGCSK 781 (1214)
Q Consensus 735 --~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l-----~~L--------------------------~sL~~L~ls~c~~ 781 (1214)
..++..+ ..++|++|++++|.....+|..+ .++ .+|++|++++|..
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0111111 12366666666666555566544 222 3477777777765
Q ss_pred CCcc---CCCCccccccCCccccC-CcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC-CcCCCCCCCEEe
Q 000943 782 SKNV---GVESLEGLGSSRTVLRN-PESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP-SLLGLCSLTKLD 856 (1214)
Q Consensus 782 l~~~---pl~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp-~~~~l~~L~~L~ 856 (1214)
.... .+++|+.|++++|.++. .|..+..+++|+.|++++|.+.... .+| .+.++++|+.|+
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------KVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT--------------HHHHTTTTCTTCCEEE
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc--------------cchhhhcCCCCCCEEE
Confidence 4432 26789999999999998 5888999999999999999775321 112 267889999999
Q ss_pred cCCCCCCCCCccc-ccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecCCcCCCcccCC---ccccceeeecCccc
Q 000943 857 LSDCNLGEGAIPS-DIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEECKRLQSLSQL---PSNIEEVRLNGCAS 931 (1214)
Q Consensus 857 Ls~~~l~~~~lp~-~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL~~L~l~~C~~ 931 (1214)
|++|.+.. .+|. .+..+++|+.|+|++|.++ .+|..+. ++|+.|+|++| .++.+|.- .++|+.|++++|.
T Consensus 410 l~~N~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~- 484 (562)
T 3a79_B 410 VSLNSLNS-HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ- 484 (562)
T ss_dssp CTTSCCBS-CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-
T ss_pred CCCCcCCC-ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-
Confidence 99999853 3554 4788999999999999986 4554443 79999999998 67777742 2789999999985
Q ss_pred ccccccc-cccchhh
Q 000943 932 LGTLSHA-LKLCKSI 945 (1214)
Q Consensus 932 L~~l~~~-~~~~~~l 945 (1214)
++.+|.. +..+..+
T Consensus 485 l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 485 LKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCCTTSTTTCTTC
T ss_pred CCCCCHHHHhcCCCC
Confidence 6678875 4444433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=6.5e-25 Score=259.28 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=217.2
Q ss_pred CCcccccccccccccccccccc-cccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcE
Q 000943 602 FQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVS 679 (1214)
Q Consensus 602 ~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~ 679 (1214)
..+.+++.|+++++.+..+|.. +..+++|++|+|++|......+ .|.++++|++|+|++|......|..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3456667777777777777655 5677777777777776554444 4777777888888776433333445677778888
Q ss_pred EecCCCCCCCccCccc--ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCC
Q 000943 680 VNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTH 757 (1214)
Q Consensus 680 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 757 (1214)
|+|++| .++.+|..+ .+++|++|++++|......|..++.+++|++|++++|.+..++ +..+++|+.|++++|..
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence 888774 456666643 5777888888877655555666778888888888888887764 56678888888887643
Q ss_pred CCcCCcccCCCCCCCEEEecCCCCCCccC--CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCccccccc
Q 000943 758 LVGLPSTINDLTSLITLNLSGCSKSKNVG--VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRS 835 (1214)
Q Consensus 758 l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~ 835 (1214)
. .+...++|+.|++++|......+ ..+|+.|++++|.++.. ..+..+++|+.|++++|.+....
T Consensus 199 ~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~-------- 264 (390)
T 3o6n_A 199 S-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIM-------- 264 (390)
T ss_dssp S-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEE--------
T ss_pred c-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcC--------
Confidence 2 23345678888888876543321 56788888888888776 46788889999999888765321
Q ss_pred CCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCccc
Q 000943 836 SHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLS 915 (1214)
Q Consensus 836 ~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp 915 (1214)
...+..+++|+.|+|++|++.. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ +..++
T Consensus 265 -------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 265 -------YHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp -------SGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred -------hhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC
Confidence 1136678889999999998854 7777788899999999999988888888888999999999875 44444
Q ss_pred -CCccccceeeecCcc
Q 000943 916 -QLPSNIEEVRLNGCA 930 (1214)
Q Consensus 916 -~lp~sL~~L~l~~C~ 930 (1214)
...++|+.|++++|+
T Consensus 335 ~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred chhhccCCEEEcCCCC
Confidence 233678888888774
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.5e-24 Score=257.33 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=180.4
Q ss_pred hhhcCcCeeeecccCccCCC--CccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEe
Q 000943 557 AFLKMTNLRMLTIGNVQLPE--GLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMR 634 (1214)
Q Consensus 557 ~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~ 634 (1214)
.+.++++|+.|+++++.+.+ .+..+ .+|++|++++|.++.+| ...+.+|++|++++|.+..++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 46667778888887776543 22232 34777777777777765 226677777777777777664 66777777777
Q ss_pred cCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCC
Q 000943 635 LCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKF 714 (1214)
Q Consensus 635 Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~l 714 (1214)
+++|+... +| ++.+++|++|++++| .+..++ ++.+++|++|++++|..+..++ ...+++|++|++++|. +..+
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-l~~l 185 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-ITEL 185 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-ccee
Confidence 77775433 33 677777777777774 344443 6667777777777766666552 2356677777777654 3345
Q ss_pred ccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccc
Q 000943 715 PEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLG 794 (1214)
Q Consensus 715 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~ 794 (1214)
| ++.+++|+.|++++|.+..++ ++.+++|+.|++++|.... +| +..+++|+.|++++|....
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~----------- 247 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE----------- 247 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-----------
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-----------
Confidence 4 666677777777777776663 6666777777777765443 55 6666677777766665433
Q ss_pred cCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCccc-----
Q 000943 795 SSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPS----- 869 (1214)
Q Consensus 795 l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~----- 869 (1214)
+| +..+++|+.|+++++.+. .+....+...+.+| +..+++|+.|+|++|... +.+|.
T Consensus 248 --------~~--~~~l~~L~~L~l~~n~L~------~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L 309 (457)
T 3bz5_A 248 --------LD--VSTLSKLTTLHCIQTDLL------EIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQL-YLLDCQAAGI 309 (457)
T ss_dssp --------CC--CTTCTTCCEEECTTCCCS------CCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTC-CEEECTTCCC
T ss_pred --------cC--HHHCCCCCEEeccCCCCC------EEECCCCccCCccc-ccccccCCEEECCCCccc-ceeccCCCcc
Confidence 22 223333333333333221 11122222222333 344566666666666532 22222
Q ss_pred ---ccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCC
Q 000943 870 ---DIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 870 ---~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C 908 (1214)
.+..+++|+.|+|++|+++.+| +..+++|+.|+++++
T Consensus 310 ~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS
T ss_pred eEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC
Confidence 2445567777777777777664 667777777777764
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.3e-24 Score=262.41 Aligned_cols=331 Identities=18% Similarity=0.138 Sum_probs=260.7
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccc-ccccccccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCcc
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~ 662 (1214)
+.++..+..++.+|. -+.+|++|+|++|.+..+ |..+..+++|++|+|++|.....++ .|.++++|++|+|++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 456777888999998 468999999999999987 6779999999999999998764543 48999999999999987
Q ss_pred CCCccCccccCCCCCcEEecCCCCCCCccCcc--c-ccccccceecccccCCCCCccc-cCCCCcceEEEeeCccCcccC
Q 000943 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK--I-AMIHLRKLVLSGCSKLKKFPEV-VGSMECLLELFLDGTAIEELP 738 (1214)
Q Consensus 663 ~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~Ls~c~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp 738 (1214)
.....|..++.+++|++|+|++|......|.. + .+++|++|+|++|......|.. ++++++|++|++++|.+..++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 55555788999999999999998655444443 4 7899999999998876666765 899999999999999998664
Q ss_pred -cccCCC--CCCcEEecCCCCCCCcCCcc--------cCCCCCCCEEEecCCCCCCccC--------CCCccccccCCcc
Q 000943 739 -SSIQLL--NGLILLNLEKCTHLVGLPST--------INDLTSLITLNLSGCSKSKNVG--------VESLEGLGSSRTV 799 (1214)
Q Consensus 739 -~~i~~l--~~L~~L~L~~c~~l~~lp~~--------l~~L~sL~~L~ls~c~~l~~~p--------l~~L~~L~l~~~~ 799 (1214)
..+..+ .+|+.|++++|......+.. +..+++|++|++++|......| ..+|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 455555 78999999998765543332 3467899999999998776554 3788999998875
Q ss_pred ccCCc-----------cccc--ccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCC
Q 000943 800 LRNPE-----------SSIF--SMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEG 865 (1214)
Q Consensus 800 l~~~~-----------~~~~--~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~ 865 (1214)
..... ..+. ..++|+.|++++|.+... .|. +..+++|+.|+|++|.+. +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~~L~Ls~n~l~-~ 313 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----------------LKSVFSHFTDLEQLTLAQNEIN-K 313 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----------------CTTTTTTCTTCCEEECTTSCCC-E
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcccccc----------------chhhcccCCCCCEEECCCCccc-c
Confidence 44321 1122 236889999988876543 232 677899999999999985 3
Q ss_pred CcccccCCCCCCcEEeCCCCCCeec-CcccCCCCCCCEEeecCCcCCCcc-cCC---ccccceeeecCccccccccc
Q 000943 866 AIPSDIGNLCSLKELCLSKNKFILL-PESISCLSKLWIIDLEECKRLQSL-SQL---PSNIEEVRLNGCASLGTLSH 937 (1214)
Q Consensus 866 ~lp~~l~~l~sL~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~~L~~l-p~l---p~sL~~L~l~~C~~L~~l~~ 937 (1214)
..|..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|.- ..+ |.. .++|++|++++|. ++.+|.
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc-cccChhhccccccccEEECCCCc-cccCCH
Confidence 4577899999999999999999977 56789999999999999854 443 422 2789999999985 555554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-24 Score=271.70 Aligned_cols=300 Identities=15% Similarity=0.141 Sum_probs=218.5
Q ss_pred Ccccccccccccccccccccc-cccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCc-cccCCCCCcE
Q 000943 603 QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVS 679 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~ 679 (1214)
.+.+++.|+++++.+..+|.. +..+++|++|+|++|......| .|+.+++|++|+|++|. +..+|+ .++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 455666666666666666654 5667777777777776555444 47777777777777764 444443 4577777777
Q ss_pred EecCCCCCCCccCccc--ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCC
Q 000943 680 VNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTH 757 (1214)
Q Consensus 680 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 757 (1214)
|+|++| .++.+|..+ .+++|++|+|++|......|..++.+++|++|++++|.+..++ ++.+++|+.|++++|..
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcc
Confidence 777775 455666543 6777888888877666556667788888888888888887765 55678888888887643
Q ss_pred CCcCCcccCCCCCCCEEEecCCCCCCccC--CCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCccccccc
Q 000943 758 LVGLPSTINDLTSLITLNLSGCSKSKNVG--VESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRS 835 (1214)
Q Consensus 758 l~~lp~~l~~L~sL~~L~ls~c~~l~~~p--l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~ 835 (1214)
. .+...++|+.|++++|......+ ..+|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+
T Consensus 205 ~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~------- 271 (597)
T 3oja_B 205 S-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY------- 271 (597)
T ss_dssp S-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES-------
T ss_pred c-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCH-------
Confidence 2 23445678888888887543322 46788888888888875 668889999999999887653311
Q ss_pred CCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCccc
Q 000943 836 SHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLS 915 (1214)
Q Consensus 836 ~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp 915 (1214)
..+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+ +..+|
T Consensus 272 --------~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 272 --------HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp --------GGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred --------HHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 136778899999999999865 7888888999999999999999999888889999999999876 44443
Q ss_pred -CCccccceeeecCcc
Q 000943 916 -QLPSNIEEVRLNGCA 930 (1214)
Q Consensus 916 -~lp~sL~~L~l~~C~ 930 (1214)
...++|+.|++++|+
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 333688888888875
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=261.27 Aligned_cols=306 Identities=20% Similarity=0.212 Sum_probs=253.2
Q ss_pred eecccCccCCCCccCCCCCceEEEecCCCCCCCCC-CC-Cccccccccccccccccc-ccccccccCccEEecCCCcCCC
Q 000943 566 MLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLI 642 (1214)
Q Consensus 566 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~ 642 (1214)
.++.++..+..-+..+|..++.|++++|.++.++. .| .+.+|++|+|++|.+..+ |..+..+++|++|+|++|....
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 34455555555555677889999999999999864 45 889999999999999987 6779999999999999997655
Q ss_pred CCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCC
Q 000943 643 STPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGS 720 (1214)
Q Consensus 643 ~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~ 720 (1214)
..+. |.++++|++|+|++|......+..+..+++|++|+|++|......|..+ .+++|+.|+|++|......+..+.+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 4444 7899999999999987655567788999999999999965443334445 7999999999998655555567899
Q ss_pred CCcceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC------CCCcccc
Q 000943 721 MECLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG------VESLEGL 793 (1214)
Q Consensus 721 l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p------l~~L~~L 793 (1214)
+++|+.|++++|.+..++. .+..+++|+.|++++|.....+|..+....+|++|++++|.... +| +++|+.|
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFL 253 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEE
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCee
Confidence 9999999999999998775 68899999999999999999999888888899999999997653 33 7899999
Q ss_pred ccCCccccCCc-ccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccC
Q 000943 794 GSSRTVLRNPE-SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIG 872 (1214)
Q Consensus 794 ~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~ 872 (1214)
++++|.++.++ ..+..+++|+.|++++|.+....+ ..+.++++|+.|+|++|.+.. ..+..+.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~L~~N~l~~-~~~~~~~ 317 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP---------------YAFRGLNYLRVLNVSGNQLTT-LEESVFH 317 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT---------------TTBTTCTTCCEEECCSSCCSC-CCGGGBS
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECH---------------HHhcCcccCCEEECCCCcCce-eCHhHcC
Confidence 99999999874 467899999999999997754211 137789999999999999964 3344678
Q ss_pred CCCCCcEEeCCCCCCe
Q 000943 873 NLCSLKELCLSKNKFI 888 (1214)
Q Consensus 873 ~l~sL~~L~L~~n~l~ 888 (1214)
.+++|+.|+|++|.+.
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 9999999999999887
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.3e-23 Score=248.12 Aligned_cols=293 Identities=16% Similarity=0.129 Sum_probs=167.3
Q ss_pred ceEEEecCCCCCCCCCCC--Cccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccC
Q 000943 585 LRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRG 660 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~ 660 (1214)
+++|++.++.++.+|..+ .+++|++|++++|.+..++. .+..+++|++|+|++|......|. |.++++|++|+|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 444444444444444432 34455555555555554432 345555555555555544333333 44555555555555
Q ss_pred ccCCCccCccc-cCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccC
Q 000943 661 CTRLRDIHPSL-LLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP 738 (1214)
Q Consensus 661 c~~l~~lp~si-~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp 738 (1214)
| .+..+|..+ ..+++|++|++++|......|..+ .+++|++|++++|... .+ .++.+++|+.|++++|.+..++
T Consensus 127 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 127 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCSSCCSEEE
T ss_pred C-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeecccccccccC
Confidence 3 334444432 445555555555533222222222 4455555555554322 12 1334445555555555554332
Q ss_pred cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCccccCC-cccccccCCCc
Q 000943 739 SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRTVLRNP-ESSIFSMQNFE 814 (1214)
Q Consensus 739 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~~l~~~-~~~~~~l~~L~ 814 (1214)
...+|+.|++++|... .+|.. .+++|+.|++++|....... +++|+.|++++|.+... |..+..+++|+
T Consensus 203 ----~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 203 ----IPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp ----CCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ----CCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 2234555555554332 22221 23455555555554433211 45566666666666655 66788899999
Q ss_pred EEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcc
Q 000943 815 ALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPES 893 (1214)
Q Consensus 815 ~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~ 893 (1214)
.|++++|.+.. +|. +..+++|+.|+|++|++.. +|..+..+++|+.|+|++|.++.+|
T Consensus 276 ~L~L~~n~l~~-----------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 276 RLYISNNRLVA-----------------LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp EEECCSSCCCE-----------------EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred EEECCCCcCcc-----------------cCcccCCCCCCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC--
Confidence 99999987653 122 4568899999999999864 8888889999999999999999886
Q ss_pred cCCCCCCCEEeecCCc
Q 000943 894 ISCLSKLWIIDLEECK 909 (1214)
Q Consensus 894 i~~l~~L~~L~L~~C~ 909 (1214)
+..+++|+.|+|++|+
T Consensus 335 ~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred chhhccCCEEEcCCCC
Confidence 7789999999999975
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.2e-23 Score=246.46 Aligned_cols=334 Identities=15% Similarity=0.077 Sum_probs=259.6
Q ss_pred hhhcCcCeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecC
Q 000943 557 AFLKMTNLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLC 636 (1214)
Q Consensus 557 ~f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls 636 (1214)
.|.++++|++|++++|.+.+....-..+|++|++++|.++.+| ...+.+|++|++++|.+..++ +..+++|++|+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 6889999999999999876532222346999999999999987 338899999999999999986 8999999999999
Q ss_pred CCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCcc
Q 000943 637 NAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPE 716 (1214)
Q Consensus 637 ~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~ 716 (1214)
+|.... + +++.+++|++|++++|..+..+ .++.+++|++|++++| .++.+| ...+++|+.|++++|... .+
T Consensus 136 ~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~-~~-- 206 (457)
T 3bz5_A 136 RNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNIT-KL-- 206 (457)
T ss_dssp TSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCS-CC--
T ss_pred CCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCC-ee--
Confidence 997655 4 4899999999999999878777 5889999999999995 577777 448899999999997644 44
Q ss_pred ccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccC
Q 000943 717 VVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSS 796 (1214)
Q Consensus 717 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~ 796 (1214)
.++.+++|++|++++|.+..+| ++.+++|+.|++++|.... +| +..+++|+.|+++++ +|+.|+++
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n---------~L~~L~l~ 272 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQT---------DLLEIDLT 272 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTC---------CCSCCCCT
T ss_pred ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCC---------CCCEEECC
Confidence 3889999999999999999998 8899999999999986554 44 567889999998765 46778888
Q ss_pred CccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCC
Q 000943 797 RTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCS 876 (1214)
Q Consensus 797 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~s 876 (1214)
+|.+.... .+..+++|+.|++++|...+.++... +.+ ..+ .+.++++|+.|+|++|+++. ++ ++.+++
T Consensus 273 ~n~~~~~~-~~~~l~~L~~L~Ls~n~~l~~l~~~~-----~~L-~~L-~l~~~~~L~~L~L~~N~l~~--l~--l~~l~~ 340 (457)
T 3bz5_A 273 HNTQLIYF-QAEGCRKIKELDVTHNTQLYLLDCQA-----AGI-TEL-DLSQNPKLVYLYLNNTELTE--LD--VSHNTK 340 (457)
T ss_dssp TCTTCCEE-ECTTCTTCCCCCCTTCTTCCEEECTT-----CCC-SCC-CCTTCTTCCEEECTTCCCSC--CC--CTTCTT
T ss_pred CCccCCcc-cccccccCCEEECCCCcccceeccCC-----Ccc-eEe-chhhcccCCEEECCCCcccc--cc--cccCCc
Confidence 88744321 14678999999999998776544210 101 111 26678899999999999965 53 899999
Q ss_pred CcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCCccccceeeecCccccccccc
Q 000943 877 LKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQLPSNIEEVRLNGCASLGTLSH 937 (1214)
Q Consensus 877 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp~sL~~L~l~~C~~L~~l~~ 937 (1214)
|+.|++++|.++.+| .|..|+++++. +...+. ..+|..++++++.--..+|.
T Consensus 341 L~~L~l~~N~l~~l~-------~L~~L~l~~n~-l~g~~~-~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 341 LKSLSCVNAHIQDFS-------SVGKIPALNNN-FEAEGQ-TITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CSEEECCSSCCCBCT-------TGGGSSGGGTS-EEEEEE-EEECCCBCCBTTBEEEECCT
T ss_pred CcEEECCCCCCCCcc-------ccccccccCCc-EEecce-eeecCccccccCcEEEEcCh
Confidence 999999999988653 44445454431 222121 24566777777765566664
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.4e-23 Score=262.24 Aligned_cols=375 Identities=19% Similarity=0.182 Sum_probs=202.7
Q ss_pred CeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCCC-C-Ccccccccccccccccccccc-cccccCccEEec
Q 000943 563 NLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRL 635 (1214)
Q Consensus 563 ~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~L 635 (1214)
+++.|++++|.+.. .+..++ +|++|++++|.++.+|.. | .+.+|++|+|++|+++.+|.+ +..+.+|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46666666665422 233333 366666666666666543 3 566666666666666666543 566666666666
Q ss_pred CCCcCCCCCCC-CCCCCCccEEeccCccCCC-ccCccccCCCCCcEEecCCCCCCCccC-ccc-cccccc----ceeccc
Q 000943 636 CNAKNLISTPD-LTGLPNLEELDLRGCTRLR-DIHPSLLLHKNLVSVNLKDCTDLTTLP-NKI-AMIHLR----KLVLSG 707 (1214)
Q Consensus 636 s~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~----~L~Ls~ 707 (1214)
++|+.....+. |+++++|++|+|++|.... .+|..++.+++|++|+|++|. ++.++ ..+ .+.+++ .++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhccc
Confidence 66654433332 5666666666666643221 234555666666666666643 33332 222 233322 344444
Q ss_pred ccCCCCCccccCCCCcceEEEeeCccCc----------------------------------------------------
Q 000943 708 CSKLKKFPEVVGSMECLLELFLDGTAIE---------------------------------------------------- 735 (1214)
Q Consensus 708 c~~l~~lp~~~~~l~~L~~L~L~~~~i~---------------------------------------------------- 735 (1214)
+. +..++........++.|++.+|...
T Consensus 211 n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred Cc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 32 2222222222223333333332110
Q ss_pred -------ccC----------------------cccCCCCCCcEEecCCCCCCCcC-------------------CcccCC
Q 000943 736 -------ELP----------------------SSIQLLNGLILLNLEKCTHLVGL-------------------PSTIND 767 (1214)
Q Consensus 736 -------~lp----------------------~~i~~l~~L~~L~L~~c~~l~~l-------------------p~~l~~ 767 (1214)
.++ ..+....+|+.|++.+|...... +.....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 000 00122234445554444321111 111223
Q ss_pred CCCCCEEEecCCCCCCcc-------CCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCc---------cc
Q 000943 768 LTSLITLNLSGCSKSKNV-------GVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPS---------PY 831 (1214)
Q Consensus 768 L~sL~~L~ls~c~~l~~~-------pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~---------~~ 831 (1214)
+++|+.|++++|...... ...+|+.|++..+.....+..+..+++|+.+++.++......+. ..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 455555555555432211 13455555555555555555566677777777766654332211 12
Q ss_pred ccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeec-CcccCCCCCCCEEeecCCc
Q 000943 832 LRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILL-PESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 832 l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~C~ 909 (1214)
+..+.+......+. +..+++|+.|+|++|++....+|..+..+++|+.|+|++|.++.+ |..+.++++|+.|+|++|
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N- 528 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN- 528 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-
Confidence 23344444444444 566788899999988765556778888889999999999988866 467888999999999887
Q ss_pred CCCcccCCc----cccceeeecCccccccccccccc
Q 000943 910 RLQSLSQLP----SNIEEVRLNGCASLGTLSHALKL 941 (1214)
Q Consensus 910 ~L~~lp~lp----~sL~~L~l~~C~~L~~l~~~~~~ 941 (1214)
++..++..+ ++|+.|++++|.-....|..+..
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 466665322 68889999888655555554443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-23 Score=258.98 Aligned_cols=293 Identities=16% Similarity=0.138 Sum_probs=173.3
Q ss_pred ceEEEecCCCCCCCCCCC--Cccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccC
Q 000943 585 LRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRG 660 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~ 660 (1214)
++.|++.++.+..+|..+ .+.+|+.|+|++|.+..++. .+..+++|++|+|++|.....+|. |+++++|++|+|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 444555555555555433 34555555555555554443 455555555555555544433333 45555555555555
Q ss_pred ccCCCccCcc-ccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccC
Q 000943 661 CTRLRDIHPS-LLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELP 738 (1214)
Q Consensus 661 c~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp 738 (1214)
| .+..+|.. ++.+++|++|+|++|......|..+ .+++|++|+|++|... .++ ++.+++|+.|++++|.+..++
T Consensus 133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSEEE
T ss_pred C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCcccccc
Confidence 3 34444443 2455555555555543222222223 4555555555554322 221 334455555555555554432
Q ss_pred cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC---CCCccccccCCccccCC-cccccccCCCc
Q 000943 739 SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG---VESLEGLGSSRTVLRNP-ESSIFSMQNFE 814 (1214)
Q Consensus 739 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p---l~~L~~L~l~~~~l~~~-~~~~~~l~~L~ 814 (1214)
...+|+.|++++|... .+|..+ .++|+.|++++|....... +++|+.|++++|.+... |..+..+++|+
T Consensus 209 ----~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 209 ----IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp ----CCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ----CCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 2345555555554332 222211 2455566665555433211 45566666666666655 66788899999
Q ss_pred EEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcc
Q 000943 815 ALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPES 893 (1214)
Q Consensus 815 ~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~ 893 (1214)
.|++++|.+.. +|. +..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|
T Consensus 282 ~L~Ls~N~l~~-----------------l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 282 RLYISNNRLVA-----------------LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp EEECTTSCCCE-----------------EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred EEECCCCCCCC-----------------CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC--
Confidence 99999987653 222 4568899999999999964 8888999999999999999999886
Q ss_pred cCCCCCCCEEeecCCc
Q 000943 894 ISCLSKLWIIDLEECK 909 (1214)
Q Consensus 894 i~~l~~L~~L~L~~C~ 909 (1214)
+..+++|+.|+|++|+
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 7789999999999986
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.4e-22 Score=255.29 Aligned_cols=373 Identities=21% Similarity=0.242 Sum_probs=229.8
Q ss_pred cChhhhhcCcCeeeecccCccCCC----CccCCCCCceEEEecCCCCCCCCCC-C-Ccccccccccccccccccccc-cc
Q 000943 553 ASAKAFLKMTNLRMLTIGNVQLPE----GLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERMWSG-IK 625 (1214)
Q Consensus 553 ~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~ 625 (1214)
+...+|.++++|++|++++|.+.. .+..++ +|++|++++|.++.+|.. | .+.+|++|++++|++..++.. +.
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhh
Confidence 456789999999999999998643 344454 599999999999999974 5 799999999999999999865 89
Q ss_pred cccCccEEecCCCcCCCC-CCC-CCCCCCccEEeccCccCCCccCccccCCCCC----cEEecCCCCCCCccCccc----
Q 000943 626 PLSNLKIMRLCNAKNLIS-TPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNL----VSVNLKDCTDLTTLPNKI---- 695 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~-~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L----~~L~L~~c~~l~~lp~~~---- 695 (1214)
++++|++|+|++|..... .|. ++.+++|++|+|++|......+..+..+.++ ..++++.+ .+..++...
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n-~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 224 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTTTTC
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC-cccccCcccccch
Confidence 999999999999986542 343 6889999999999974322223333322221 12333321 111111100
Q ss_pred ----------------------ccc-------------------------------------------------------
Q 000943 696 ----------------------AMI------------------------------------------------------- 698 (1214)
Q Consensus 696 ----------------------~l~------------------------------------------------------- 698 (1214)
.+.
T Consensus 225 ~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 304 (635)
T 4g8a_A 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC 304 (635)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG
T ss_pred hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh
Confidence 001
Q ss_pred --cccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc--------------------ccCCCCCCcEEecCCCC
Q 000943 699 --HLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS--------------------SIQLLNGLILLNLEKCT 756 (1214)
Q Consensus 699 --~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~--------------------~i~~l~~L~~L~L~~c~ 756 (1214)
+++.+.+.++... .+ ..+..+..|+.|++.++.+..++. ....+++|+.|+++.|.
T Consensus 305 ~~~l~~l~~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIE-RV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp GTTCSEEEEESCEEE-EC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSC
T ss_pred hcccccccccccccc-cc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccc
Confidence 1111111111000 00 011222344555555544332221 22346777777777765
Q ss_pred CCC--cCCcccCCCCCCCEEEecCCCCCCcc----CCCCccccccCCccccCC--cccccccCCCcEEeecCCCCCCCCC
Q 000943 757 HLV--GLPSTINDLTSLITLNLSGCSKSKNV----GVESLEGLGSSRTVLRNP--ESSIFSMQNFEALSFLGWTLPQSLP 828 (1214)
Q Consensus 757 ~l~--~lp~~l~~L~sL~~L~ls~c~~l~~~----pl~~L~~L~l~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~l~ 828 (1214)
... ..+.....+.+|+.|++..+...... .+++|+.+++..+..... +..+..+.+++.++++.|.+....+
T Consensus 383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~ 462 (635)
T 4g8a_A 383 LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 462 (635)
T ss_dssp CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccc
Confidence 432 23334445566666666555432211 144555555555444332 2234455555555555554432211
Q ss_pred --------cccccccCCcccc-cCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecC-cccCCC
Q 000943 829 --------SPYLRRSSHNVAL-RLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLP-ESISCL 897 (1214)
Q Consensus 829 --------~~~l~~~~~~~~~-~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l 897 (1214)
...+.+..|.... ..|. +..+++|+.|+|++|++. +..|..+.++++|+.|+|++|+++.+| ..+..+
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 1122333333222 2343 778999999999999985 455788999999999999999999886 468999
Q ss_pred CCCCEEeecCCcCCCccc----CCccccceeeecCcc
Q 000943 898 SKLWIIDLEECKRLQSLS----QLPSNIEEVRLNGCA 930 (1214)
Q Consensus 898 ~~L~~L~L~~C~~L~~lp----~lp~sL~~L~l~~C~ 930 (1214)
++|++|+|++|+--...| .+|++|+.|++++|+
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999999975433323 456889999999875
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.3e-22 Score=230.38 Aligned_cols=281 Identities=19% Similarity=0.244 Sum_probs=194.4
Q ss_pred CceEEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCc
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGC 661 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c 661 (1214)
+++.++++++.++.+|..+ +.+++.|++++|.+..++. .+..+++|++|+|++|......| .|.++++|++|+|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4777888888888888765 4678888888888887775 58888999999999887766644 4888899999999885
Q ss_pred cCCCccCccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCC--CCccccCCCCcceEEEeeCccCccc
Q 000943 662 TRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLK--KFPEVVGSMECLLELFLDGTAIEEL 737 (1214)
Q Consensus 662 ~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~lp~~~~~l~~L~~L~L~~~~i~~l 737 (1214)
.+..+|..+. ++|++|++++| .++.++.. + ++++|++|++++|.... ..+..+..+++|++|++++|.+..+
T Consensus 111 -~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 -QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp -CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred -cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 4667777665 78999999885 45555543 3 78889999998876532 5567788889999999999999988
Q ss_pred CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEe
Q 000943 738 PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALS 817 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~ 817 (1214)
|..+. ++|+.|++++|......|..+..+++|++|++++|......+ ..+..+++|+.|+
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~ 246 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------------GSLANTPHLRELH 246 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------------TTGGGSTTCCEEE
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh------------------hhccCCCCCCEEE
Confidence 87664 789999999987766667788888888888888876543222 2344455555555
Q ss_pred ecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCccc-ccC------CCCCCcEEeCCCCCCe-
Q 000943 818 FLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPS-DIG------NLCSLKELCLSKNKFI- 888 (1214)
Q Consensus 818 l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~-~l~------~l~sL~~L~L~~n~l~- 888 (1214)
+++|.+.. +|. +..+++|+.|+|++|++.. +|. .+. ..++|+.|++++|.+.
T Consensus 247 L~~N~l~~-----------------lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 247 LNNNKLVK-----------------VPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSSCCSS-----------------CCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCcCcc-----------------CChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccc
Confidence 55554431 121 4445556666666665533 221 121 2356666777777654
Q ss_pred --ecCcccCCCCCCCEEeecCC
Q 000943 889 --LLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 889 --~lp~~i~~l~~L~~L~L~~C 908 (1214)
..|..+..+.+|+.++|++|
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC---
T ss_pred cccCccccccccceeEEEeccc
Confidence 22355666677777777665
No 49
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.89 E-value=9.7e-25 Score=215.96 Aligned_cols=136 Identities=15% Similarity=0.254 Sum_probs=98.6
Q ss_pred CCCCCccccEEEccccccccccHHHHHHHHHHh--CCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchh
Q 000943 7 KKVSDWKYDVFLSFRGEDTRKNFTDHLCAALDQ--KGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTW 84 (1214)
Q Consensus 7 ~~~~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~w 84 (1214)
|....+.|||||||+++|+ .||++|+.+|++ .|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3445689999999999995 689999999998 599999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEEEeecccccc----cccchhHHhhhhhHhhhcccHHHHHHHHHHH
Q 000943 85 CLDELVKIVELKSTNGQQQVIFPIFYDVEPTVVR----KQTASFREAFSKHEETFRMNIEKVQKWRDAL 149 (1214)
Q Consensus 85 c~~El~~~~~~~~~~~~~~~v~Pi~~~v~p~~vr----~q~g~~~~~~~~~~~~~~~~~~~~~~w~~aL 149 (1214)
|+.|+..|+.+...+.. +||||||+|+++++. ..... .+..++..|....+.|.+|++|+
T Consensus 82 c~~El~~al~~~~~~~~--~vIpv~~~v~~~~lp~~Lr~~~~i---d~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEG--CTIPLLSGLSRAAYPPELRFMYYV---DGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSSSS--EEEEEECSCCGGGSCGGGGGSCCE---ETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCC--cEEEEEcCCChhhCCHHHhCeeee---eccChHhhHHHHHHHHHHHHHhc
Confidence 99999999998754444 678999999866654 43321 12345566777778899998764
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=7e-22 Score=227.81 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=31.1
Q ss_pred cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCc-ccCC------CCCCCEEeecCCc
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPE-SISC------LSKLWIIDLEECK 909 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~-~i~~------l~~L~~L~L~~C~ 909 (1214)
+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|.++.+|. .+.. .++|+.|++++++
T Consensus 237 ~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 334455555555555553 255555555555555555555554442 1211 2445555555554
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=5.8e-22 Score=228.47 Aligned_cols=280 Identities=18% Similarity=0.253 Sum_probs=171.8
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccc-cccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCc
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGC 661 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c 661 (1214)
+++.++++++.++.+|..+ +.+|+.|++++|.+..++ ..+..+++|++|+|++|......| .|.++++|++|+|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3666777777777777655 356777777777777664 356777777777777776554433 3667777777777764
Q ss_pred cCCCccCccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCC--CCCccccCCCCcceEEEeeCccCccc
Q 000943 662 TRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKL--KKFPEVVGSMECLLELFLDGTAIEEL 737 (1214)
Q Consensus 662 ~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l--~~lp~~~~~l~~L~~L~L~~~~i~~l 737 (1214)
.+..+|..+. ++|++|++++| .++.+|.. + .+++|++|++++|... ...|..++.+ +|++|++++|.+..+
T Consensus 113 -~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 -HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp -CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred -cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 4556666554 66777777764 34445543 2 5666777777666542 2445555555 677777777777766
Q ss_pred CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCc-ccccccCCCcEE
Q 000943 738 PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPE-SSIFSMQNFEAL 816 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L 816 (1214)
|..+. ++|+.|++++|......|..+..+++|++|++++|. ++.++ ..+..+++|+.|
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-------------------l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-------------------IRMIENGSLSFLPTLREL 246 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-------------------CCCCCTTGGGGCTTCCEE
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-------------------CCcCChhHhhCCCCCCEE
Confidence 65543 566677776665555555556666666666555554 33332 345666677777
Q ss_pred eecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcc-cccCC------CCCCcEEeCCCCCCe
Q 000943 817 SFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIP-SDIGN------LCSLKELCLSKNKFI 888 (1214)
Q Consensus 817 ~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~------l~sL~~L~L~~n~l~ 888 (1214)
++++|.+.. +|. +..+++|+.|+|++|++.. ++ ..+.. .++|+.|++++|.+.
T Consensus 247 ~L~~N~l~~-----------------lp~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 247 HLDNNKLSR-----------------VPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp ECCSSCCCB-----------------CCTTGGGCTTCCEEECCSSCCCB--CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ECCCCcCee-----------------cChhhhcCccCCEEECCCCCCCc--cChhHccccccccccccccceEeecCccc
Confidence 776665541 222 4556677777777777643 32 22222 456788888888765
Q ss_pred ---ecCcccCCCCCCCEEeecCCc
Q 000943 889 ---LLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 889 ---~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
..|..+..+++|+.|++++|+
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 334567778888888888775
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=3.4e-23 Score=236.50 Aligned_cols=249 Identities=19% Similarity=0.228 Sum_probs=143.8
Q ss_pred CccEEecCCCcCCC--CCC-CCCCCCCccEEeccC-ccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccce
Q 000943 629 NLKIMRLCNAKNLI--STP-DLTGLPNLEELDLRG-CTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKL 703 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~--~~p-~~~~l~~L~~L~L~~-c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L 703 (1214)
+++.|+|+++.... .+| .+.++++|++|+|++ |.....+|..++.+++|++|+|++|.....+|..+ .+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555554432 222 345555555555553 33333445555555555555555543333444444 45555555
Q ss_pred ecccccCCCCCccccCCCCcceEEEeeCccCc-ccCcccCCCC-CCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCC
Q 000943 704 VLSGCSKLKKFPEVVGSMECLLELFLDGTAIE-ELPSSIQLLN-GLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 704 ~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
+|++|.....+|..++.+++|++|++++|.+. .+|..+..++ +|+.|++++|.....+|..+..++ |+.|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 55555544455555666666666666666665 5565666555 666666666655555555555554 55555554432
Q ss_pred CCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCC
Q 000943 782 SKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCN 861 (1214)
Q Consensus 782 l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~ 861 (1214)
.. ..|..+..+++|+.|++++|.+... +|.+..+++|++|+|++|.
T Consensus 210 ~~------------------~~~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 210 EG------------------DASVLFGSDKNTQKIHLAKNSLAFD----------------LGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EE------------------CCGGGCCTTSCCSEEECCSSEECCB----------------GGGCCCCTTCCEEECCSSC
T ss_pred cC------------------cCCHHHhcCCCCCEEECCCCceeee----------------cCcccccCCCCEEECcCCc
Confidence 11 1234555666666666666655322 2335566778888888887
Q ss_pred CCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecCCcCCCcc
Q 000943 862 LGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEECKRLQSL 914 (1214)
Q Consensus 862 l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~l 914 (1214)
+. +.+|..+..+++|+.|+|++|.++ .+|.. ..+++|+.|++++++.+...
T Consensus 256 l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 256 IY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 74 357777888888888888888877 56644 67777777777777655443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3e-22 Score=230.12 Aligned_cols=173 Identities=23% Similarity=0.357 Sum_probs=92.5
Q ss_pred cccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCC
Q 000943 606 NFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDC 685 (1214)
Q Consensus 606 ~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c 685 (1214)
+++.|++++|.+..+|..+..+++|++|+|++|.....+..++++++|++|+|++| .+..+|..++.+++|++|+|++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCC
Confidence 34444444444444555555566666666666654422223556666666666664 33466666666666666666666
Q ss_pred CCCCccCccc----------ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCC
Q 000943 686 TDLTTLPNKI----------AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKC 755 (1214)
Q Consensus 686 ~~l~~lp~~~----------~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 755 (1214)
+.+..+|..+ ++++|++|+|++|. +..+|..++++++|++|++++|.+..+|..+..+++|+.|+|++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 6666666544 24555555555543 224555555555555555555555555555555555555555555
Q ss_pred CCCCcCCcccCCCCCCCEEEecCCC
Q 000943 756 THLVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 756 ~~l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
.....+|..+.++++|+.|++++|.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred cchhhhHHHhcCCCCCCEEECCCCC
Confidence 5554454444444444444444443
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.5e-21 Score=222.96 Aligned_cols=283 Identities=15% Similarity=0.127 Sum_probs=200.4
Q ss_pred cccccccccccccccccccccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 604 PENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
..+++.++++++.+..+|..+. ++|+.|+|++|......+ .|.++++|++|+|++|......|..+..+++|++|+|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4578889999999998887664 688999999997665555 4888999999999986544444778888999999999
Q ss_pred CCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCc---ccCcccCCCCCCcEEecCCCCCCC
Q 000943 683 KDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE---ELPSSIQLLNGLILLNLEKCTHLV 759 (1214)
Q Consensus 683 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~l~ 759 (1214)
++| .++.+|..+. ++|++|++++|......+..+.++++|++|++++|.+. ..+..+..+++|+.|++++|.. .
T Consensus 108 s~n-~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~ 184 (330)
T 1xku_A 108 SKN-QLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-T 184 (330)
T ss_dssp CSS-CCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-C
T ss_pred CCC-cCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-c
Confidence 885 4667776543 67777777776555444555677777777777777765 2344566666666666666543 2
Q ss_pred cCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCc
Q 000943 760 GLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHN 838 (1214)
Q Consensus 760 ~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~ 838 (1214)
.+|..+. ++|++| ++++|.++.. +..+..+++|+.|++++|.+....+
T Consensus 185 ~l~~~~~--~~L~~L-------------------~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 233 (330)
T 1xku_A 185 TIPQGLP--PSLTEL-------------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---------- 233 (330)
T ss_dssp SCCSSCC--TTCSEE-------------------ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----------
T ss_pred cCCcccc--ccCCEE-------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----------
Confidence 3443332 444444 4555555544 5678889999999999987753211
Q ss_pred ccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcc-cC------CCCCCCEEeecCCcCC
Q 000943 839 VALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPES-IS------CLSKLWIIDLEECKRL 911 (1214)
Q Consensus 839 ~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~-i~------~l~~L~~L~L~~C~~L 911 (1214)
..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|.. +. ..+.|+.|++++++..
T Consensus 234 -----~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 234 -----GSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp -----TTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -----hhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 13667899999999999996 4999999999999999999999988743 22 3578999999998742
Q ss_pred C-cc-cC---CccccceeeecCc
Q 000943 912 Q-SL-SQ---LPSNIEEVRLNGC 929 (1214)
Q Consensus 912 ~-~l-p~---lp~sL~~L~l~~C 929 (1214)
. .+ |. -..+++.+++++|
T Consensus 307 ~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccCccccccccceeEEEeccc
Confidence 2 12 11 1256777887766
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3e-21 Score=221.75 Aligned_cols=221 Identities=26% Similarity=0.351 Sum_probs=168.1
Q ss_pred cccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-cccccccee
Q 000943 626 PLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLV 704 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 704 (1214)
...+++.|+|++|.....++.+.++++|++|+|++|. +..+|..++.+++|++|+|++| .++.+|..+ .+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 3578999999999876555568889999999999965 5589999999999999999996 455888777 789999999
Q ss_pred cccccCCCCCccccCC---------CCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEE
Q 000943 705 LSGCSKLKKFPEVVGS---------MECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLN 775 (1214)
Q Consensus 705 Ls~c~~l~~lp~~~~~---------l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ 775 (1214)
|++|..+..+|..++. +++|++|++++|.+..+|..++.+++|++|+|++|... .+|..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 9999999888887654 78888888888888888877777777777777776544 4555666666666666
Q ss_pred ecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEE
Q 000943 776 LSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKL 855 (1214)
Q Consensus 776 ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L 855 (1214)
+++|...+.+| . .+.++++|+.|
T Consensus 236 Ls~n~~~~~~p------------------~---------------------------------------~~~~l~~L~~L 258 (328)
T 4fcg_A 236 LRGCTALRNYP------------------P---------------------------------------IFGGRAPLKRL 258 (328)
T ss_dssp CTTCTTCCBCC------------------C---------------------------------------CTTCCCCCCEE
T ss_pred CcCCcchhhhH------------------H---------------------------------------HhcCCCCCCEE
Confidence 66665443332 1 24556677777
Q ss_pred ecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe-ecCcccCCCCCCCEEeecC
Q 000943 856 DLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI-LLPESISCLSKLWIIDLEE 907 (1214)
Q Consensus 856 ~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~ 907 (1214)
+|++|++. +.+|..+..+++|+.|+|++|++. .+|..+.++++|+.+++..
T Consensus 259 ~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 77777663 467777777788888888877544 7777788888888777764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.2e-20 Score=230.81 Aligned_cols=254 Identities=22% Similarity=0.248 Sum_probs=137.0
Q ss_pred ceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCC
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l 664 (1214)
++.|+++++.++.+|..+. .+|++|++++|.++.+|. .+++|++|+|++|+. ..+|. .+++|++|+|++| .+
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSC-CC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCC-cC
Confidence 3444444444444544432 445555555555554444 345555555555542 23333 4555556665553 34
Q ss_pred CccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCC
Q 000943 665 RDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLL 744 (1214)
Q Consensus 665 ~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 744 (1214)
..+|. .+++|+.|++++| .++.+|.. +++|++|+|++|. +..+|.. +.+|+.|++++|.+..+| ..+
T Consensus 114 ~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~ 180 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLP---MLP 180 (622)
T ss_dssp CCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCC---CCC
T ss_pred CCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCCCCCc---ccC
Confidence 44443 3455566666553 34445542 3556666666542 3344432 344666666666666666 345
Q ss_pred CCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCC
Q 000943 745 NGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLP 824 (1214)
Q Consensus 745 ~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 824 (1214)
++|+.|++++|.. ..+|.. +++|+.|++++|. ++.+|.. +++|+.|++++|.+.
T Consensus 181 ~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~-------------------l~~l~~~---~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 181 SGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNR-------------------LTSLPAL---PSGLKELIVSGNRLT 234 (622)
T ss_dssp TTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC-------------------CSSCCCC---CTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCC-CCCCCc---cchhhEEECcCCc-------------------ccccCCC---CCCCCEEEccCCccC
Confidence 6666666666543 233331 2445555555443 3333321 255666666665443
Q ss_pred CCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEe
Q 000943 825 QSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIID 904 (1214)
Q Consensus 825 ~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~ 904 (1214)
. +| ..+++|+.|+|++|++.. +|. .+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus 235 ~-----------------lp--~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 235 S-----------------LP--VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp C-----------------CC--CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred c-----------------CC--CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 2 12 234567777777777653 555 55677777777777777777777777777777
Q ss_pred ecCCc
Q 000943 905 LEECK 909 (1214)
Q Consensus 905 L~~C~ 909 (1214)
|++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 77765
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.2e-20 Score=230.90 Aligned_cols=262 Identities=24% Similarity=0.233 Sum_probs=175.5
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~ 684 (1214)
.+++.|+++++.++.+|..+. ++|+.|+|++|... .+|. .+++|++|+|++|. +..+|. .+++|++|+|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 356777777777777776665 67777777777543 4444 56777777777753 556665 556777777766
Q ss_pred CCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcc
Q 000943 685 CTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPST 764 (1214)
Q Consensus 685 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 764 (1214)
| .++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.+..+|. .+++|+.|++++|.. ..+|
T Consensus 111 N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l-~~l~-- 177 (622)
T 3g06_A 111 N-PLTHLPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQL-TSLP-- 177 (622)
T ss_dssp C-CCCCCCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCC--
T ss_pred C-cCCCCCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCC-CCCc--
Confidence 4 4555555 45566666666653 4445543 3556666666666666553 234556666665432 2233
Q ss_pred cCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC
Q 000943 765 INDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP 844 (1214)
Q Consensus 765 l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp 844 (1214)
..+++ |+.|++++|.++.+|.. +++|+.|++++|.+.. +|
T Consensus 178 -~~~~~-------------------L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-----------------l~ 217 (622)
T 3g06_A 178 -MLPSG-------------------LQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-----------------LP 217 (622)
T ss_dssp -CCCTT-------------------CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-----------------CC
T ss_pred -ccCCC-------------------CcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-----------------cC
Confidence 22344 45555555555555543 4789999999987653 22
Q ss_pred CcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCC---cccc
Q 000943 845 SLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQL---PSNI 921 (1214)
Q Consensus 845 ~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~l---p~sL 921 (1214)
. .+++|+.|+|++|++.. +| ..+++|+.|+|++|.++.+|. .+++|+.|+|++| .+..+|.. .++|
T Consensus 218 ~--~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 218 A--LPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp C--CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred C--CCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 2 24789999999999965 77 567899999999999999997 6789999999998 56677642 2689
Q ss_pred ceeeecCccccccccccc
Q 000943 922 EEVRLNGCASLGTLSHAL 939 (1214)
Q Consensus 922 ~~L~l~~C~~L~~l~~~~ 939 (1214)
+.|++++|+--+..|..+
T Consensus 287 ~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CEEECCSCCCCHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHH
Confidence 999999998655555433
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.2e-21 Score=223.64 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=194.7
Q ss_pred CCccEEeccCccCCC--ccCccccCCCCCcEEecCC-CCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceE
Q 000943 651 PNLEELDLRGCTRLR--DIHPSLLLHKNLVSVNLKD-CTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLE 726 (1214)
Q Consensus 651 ~~L~~L~L~~c~~l~--~lp~si~~l~~L~~L~L~~-c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~ 726 (1214)
.+++.|+|++|.... .+|..+..+++|++|+|++ +.....+|..+ .+++|++|+|++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578899999876555 6888888888899998885 44445677666 7888888888887766677888888888888
Q ss_pred EEeeCccCc-ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCC-CCCEEEecCCCCCCccCCCCccccccCCccccCCc
Q 000943 727 LFLDGTAIE-ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLT-SLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPE 804 (1214)
Q Consensus 727 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~-sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~ 804 (1214)
|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|.... ..|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------------------~~~ 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------------------KIP 191 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------------------ECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------------------cCC
Confidence 888888887 6777788888888888888777667777777776 77777776664332 235
Q ss_pred ccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCC
Q 000943 805 SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSK 884 (1214)
Q Consensus 805 ~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~ 884 (1214)
..+..+. |+.|++++|.+....+ ..+..+++|+.|+|++|.+.. .+ ..+..+++|++|+|++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~---------------~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDAS---------------VLFGSDKNTQKIHLAKNSLAF-DL-GKVGLSKNLNGLDLRN 253 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCG---------------GGCCTTSCCSEEECCSSEECC-BG-GGCCCCTTCCEEECCS
T ss_pred hHHhCCc-ccEEECcCCcccCcCC---------------HHHhcCCCCCEEECCCCceee-ec-CcccccCCCCEEECcC
Confidence 6666776 9999999987654311 126778999999999999853 34 4488899999999999
Q ss_pred CCCe-ecCcccCCCCCCCEEeecCCcCCCcccCCc--cccceeeecCcccccccc
Q 000943 885 NKFI-LLPESISCLSKLWIIDLEECKRLQSLSQLP--SNIEEVRLNGCASLGTLS 936 (1214)
Q Consensus 885 n~l~-~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp--~sL~~L~l~~C~~L~~l~ 936 (1214)
|.++ .+|..+..+++|+.|+|++|+--..+|... ++|+.|++.+|+.+...|
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 9999 889999999999999999987555677653 678889999988776554
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=222.63 Aligned_cols=266 Identities=20% Similarity=0.226 Sum_probs=160.3
Q ss_pred EEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCC
Q 000943 587 FLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 587 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l 664 (1214)
..+.+++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|+|++|......|. |.++++|++|+|++| .+
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 35666777777777652 467777777777777665 577777777777777765544443 777777777777774 44
Q ss_pred CccCcc-ccCCCCCcEEecCCCCCCCccCc--cc-ccccccceecccccCCCCC-ccccCCCCcceEEEeeCccCccc-C
Q 000943 665 RDIHPS-LLLHKNLVSVNLKDCTDLTTLPN--KI-AMIHLRKLVLSGCSKLKKF-PEVVGSMECLLELFLDGTAIEEL-P 738 (1214)
Q Consensus 665 ~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p 738 (1214)
..+|.. +..+++|++|+|++| .++.+|. .+ .+++|++|++++|..+..+ |..++.+++|++|++++|.+..+ |
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 555554 666777777777764 4455554 22 5666666666665444433 34455566666666666655544 4
Q ss_pred cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEee
Q 000943 739 SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSF 818 (1214)
Q Consensus 739 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l 818 (1214)
..+..+++|++|++++|.. ..+|..+ +..+++|+.|++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l-~~~~~~~-----------------------------------------~~~~~~L~~L~L 229 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQH-ILLLEIF-----------------------------------------VDVTSSVECLEL 229 (353)
T ss_dssp TTTTTCSEEEEEEEECSCS-TTHHHHH-----------------------------------------HHHTTTEEEEEE
T ss_pred HHHhccccCCeecCCCCcc-ccchhhh-----------------------------------------hhhcccccEEEC
Confidence 4444555555555544432 2222211 122344444444
Q ss_pred cCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCC---CcccccCCCCCCcEEeCCCCCCeecCccc-
Q 000943 819 LGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEG---AIPSDIGNLCSLKELCLSKNKFILLPESI- 894 (1214)
Q Consensus 819 ~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~sL~~L~L~~n~l~~lp~~i- 894 (1214)
++|.+....+ ..++.......++.++|+++.+... .+|..+..+++|+.|+|++|.++.+|..+
T Consensus 230 ~~n~l~~~~~------------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 230 RDTDLDTFHF------------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp ESCBCTTCCC------------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCccccccc------------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 4443332110 0111123345677777777766431 36777888899999999999999888775
Q ss_pred CCCCCCCEEeecCCc
Q 000943 895 SCLSKLWIIDLEECK 909 (1214)
Q Consensus 895 ~~l~~L~~L~L~~C~ 909 (1214)
..+++|+.|+|++|+
T Consensus 298 ~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 298 DRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCCCEEEeeCCC
Confidence 788889999988875
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=6.5e-20 Score=208.71 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=80.6
Q ss_pred EEEecCCCCCCCCCCCCcccccccccccccccccccc-cccccCccEEecCCCcCCCC---CCCCCCCCCccEEeccCcc
Q 000943 587 FLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLIS---TPDLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 587 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~---~p~~~~l~~L~~L~L~~c~ 662 (1214)
.++.+++.++.+|..+ +.+|++|++++|.+..+|.. +..+++|++|+|++|..... .+.+.++++|++|+|++|
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 4555666666666544 24566666666666655544 45666666666666543221 122334555666666553
Q ss_pred CCCccCccccCCCCCcEEecCCCCCCCccCc--cc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcc--c
Q 000943 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLPN--KI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEE--L 737 (1214)
Q Consensus 663 ~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~--l 737 (1214)
.+..+|..+..+++|++|++++| .++.++. .+ .+++|++|++++|......|..+..+++|++|++++|.+.. +
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 34445555555555555555553 2233322 11 34444444444443333333444444444444444444432 3
Q ss_pred CcccCCCCCCcEEecCCC
Q 000943 738 PSSIQLLNGLILLNLEKC 755 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c 755 (1214)
|..+..+++|+.|++++|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp CSCCTTCTTCCEEECTTS
T ss_pred hhHHhhCcCCCEEECCCC
Confidence 444444444444444444
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=3.3e-19 Score=213.76 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=126.9
Q ss_pred ceEEEecCCCCCCCCCCCCcccccccccccccccccc-cccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCcc
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~ 662 (1214)
.+.++..+..++.+|..+ +.+++.|+|++|++..++ ..+..+++|+.|+|++|......+ .|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-
Confidence 445666666777777665 366777777777777665 457777888888888776544433 3777778888888775
Q ss_pred CCCccCc-cccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCcc-ccCCCCcceEEEeeCccCcccC
Q 000943 663 RLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPE-VVGSMECLLELFLDGTAIEELP 738 (1214)
Q Consensus 663 ~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp 738 (1214)
.+..+|. .+..+++|++|+|++| .++.+|.. + .+++|++|+|++|+.+..++. .+.++++|++|++++|.+..+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 4555554 5677777888888774 35555542 2 677777777777766666554 4677777777777777777776
Q ss_pred cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCC
Q 000943 739 SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 739 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
.+..+++|+.|+|++|......|..+.++++|+.|++++|.
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence 35666666666666665544445555555555555555443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.6e-19 Score=214.29 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=129.7
Q ss_pred ceEEEecCCCCCCCCCCCCccccccccccccccccc-ccccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCcc
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~ 662 (1214)
.+.++..+..++.+|..+ +.+++.|+|++|++..+ +..+..+++|+.|+|++|......+ .|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 445666666777777655 36777777888777766 3557788888888888886655443 37778888888888854
Q ss_pred CCCccCcc-ccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCCCcc-ccCCCCcceEEEeeCccCcccC
Q 000943 663 RLRDIHPS-LLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPE-VVGSMECLLELFLDGTAIEELP 738 (1214)
Q Consensus 663 ~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp 738 (1214)
+..+|.. +..+++|++|+|++| .++.+|... .+++|++|+|++|+.+..++. .+..+++|++|+|++|.+..+|
T Consensus 135 -l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 135 -LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp -CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred -CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 5555543 667888888888875 455665532 677788888887777776655 4677777888888877777765
Q ss_pred cccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCC
Q 000943 739 SSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 739 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
.+..+++|+.|+|++|......|..+.++++|+.|++++|.
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 35666666666666665555445555555555555555443
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=8.7e-23 Score=246.70 Aligned_cols=333 Identities=19% Similarity=0.170 Sum_probs=182.1
Q ss_pred CceEEEecCCCCCCCCCC--C-Cccccccccccccccc-----ccccccccccCccEEecCCCcCCCCCC-C-CCCCC--
Q 000943 584 ELRFLEWHGYPFKSLPSN--F-QPENFFELNMCYSRME-----RMWSGIKPLSNLKIMRLCNAKNLISTP-D-LTGLP-- 651 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~--~-~~~~L~~L~L~~~~l~-----~l~~~~~~L~~L~~L~Ls~~~~l~~~p-~-~~~l~-- 651 (1214)
+|++|+++++.+...+.. + .+++|++|++++|.+. .++..+..+++|++|+|++|......+ . +..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455555555554433211 1 3456666666666655 345556666777777777665322111 1 11222
Q ss_pred --CccEEeccCccCCC----ccCccccCCCCCcEEecCCCCCCCcc-Cccc------ccccccceecccccCCCC----C
Q 000943 652 --NLEELDLRGCTRLR----DIHPSLLLHKNLVSVNLKDCTDLTTL-PNKI------AMIHLRKLVLSGCSKLKK----F 714 (1214)
Q Consensus 652 --~L~~L~L~~c~~l~----~lp~si~~l~~L~~L~L~~c~~l~~l-p~~~------~l~~L~~L~Ls~c~~l~~----l 714 (1214)
+|++|+|++|..-. .++..+..+++|++|+|++|. ++.. +..+ ..++|++|++++|..... +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777654221 345566667777777777654 2211 1111 134577777777654332 3
Q ss_pred ccccCCCCcceEEEeeCccCcccC-cccC-----CCCCCcEEecCCCCCCCc----CCcccCCCCCCCEEEecCCCCCCc
Q 000943 715 PEVVGSMECLLELFLDGTAIEELP-SSIQ-----LLNGLILLNLEKCTHLVG----LPSTINDLTSLITLNLSGCSKSKN 784 (1214)
Q Consensus 715 p~~~~~l~~L~~L~L~~~~i~~lp-~~i~-----~l~~L~~L~L~~c~~l~~----lp~~l~~L~sL~~L~ls~c~~l~~ 784 (1214)
+..+..+++|++|++++|.+.... ..+. ..++|+.|++++|..... ++..+..+++|++|++++|.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 444555667777777777665321 1111 245677777777654432 455566667777777777753321
Q ss_pred c----------CCCCccccccCCccccC-----CcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC--cC
Q 000943 785 V----------GVESLEGLGSSRTVLRN-----PESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS--LL 847 (1214)
Q Consensus 785 ~----------pl~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~--~~ 847 (1214)
. +.++|+.|++++|.++. ++..+..+++|+.|++++|.+....+. .+.. ..
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------------~l~~~l~~ 310 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR------------LLCETLLE 310 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH------------HHHHHHTS
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH------------HHHHHhcc
Confidence 0 24567777777777665 455666677777777777754321000 0000 11
Q ss_pred CCCCCCEEecCCCCCCCCC---cccccCCCCCCcEEeCCCCCCeec-C----cccCC-CCCCCEEeecCCcCCC-----c
Q 000943 848 GLCSLTKLDLSDCNLGEGA---IPSDIGNLCSLKELCLSKNKFILL-P----ESISC-LSKLWIIDLEECKRLQ-----S 913 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~sL~~L~L~~n~l~~l-p----~~i~~-l~~L~~L~L~~C~~L~-----~ 913 (1214)
..++|+.|+|++|.+.... ++..+..+++|+.|+|++|.+... + ..+.. .++|+.|+|++|. +. .
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~ 389 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSS 389 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHH
Confidence 2356777777777764321 445556667777777777766532 1 22222 5677777777763 33 3
Q ss_pred ccCC---ccccceeeecCcc
Q 000943 914 LSQL---PSNIEEVRLNGCA 930 (1214)
Q Consensus 914 lp~l---p~sL~~L~l~~C~ 930 (1214)
+|.. .++|++|++++|+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHhCCCccEEECCCCC
Confidence 3321 2567777777764
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.6e-19 Score=210.65 Aligned_cols=240 Identities=23% Similarity=0.266 Sum_probs=134.9
Q ss_pred ccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccC-ccc-ccccccceecc
Q 000943 630 LKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLP-NKI-AMIHLRKLVLS 706 (1214)
Q Consensus 630 L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls 706 (1214)
.+.++.++.. +..+|. +. ++|+.|+|++|......+..+..+++|++|+|++|. ++.++ ..+ ++++|++|+|+
T Consensus 45 ~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECC
Confidence 4455555543 333333 32 567777777754332233566677777777777643 44444 233 56666666666
Q ss_pred cccCCCCCccccCCCCcceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCCCCcCCc-ccCCCCCCCEEEecCCCCCCc
Q 000943 707 GCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTHLVGLPS-TINDLTSLITLNLSGCSKSKN 784 (1214)
Q Consensus 707 ~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~sL~~L~ls~c~~l~~ 784 (1214)
+|......+..+..+++|++|+|++|.+..+|. .+..+++|+.|+|++|+.+..++. .+.++++|++|++++|..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l--- 197 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--- 197 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC---
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC---
Confidence 654333223346666666666666666666654 455666666666666655555543 355566666666555532
Q ss_pred cCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCC
Q 000943 785 VGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGE 864 (1214)
Q Consensus 785 ~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~ 864 (1214)
+.+| .+..+++|+.|++++|.+....+ ..+.++++|+.|+|++|.+..
T Consensus 198 ----------------~~~~-~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 198 ----------------REIP-NLTPLIKLDELDLSGNHLSAIRP---------------GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp ----------------SSCC-CCTTCSSCCEEECTTSCCCEECT---------------TTTTTCTTCCEEECTTCCCCE
T ss_pred ----------------cccc-ccCCCcccCEEECCCCccCccCh---------------hhhccCccCCEEECCCCceeE
Confidence 2222 24455666666666665432111 124556666666666666632
Q ss_pred CCcccccCCCCCCcEEeCCCCCCeecCc-ccCCCCCCCEEeecCCc
Q 000943 865 GAIPSDIGNLCSLKELCLSKNKFILLPE-SISCLSKLWIIDLEECK 909 (1214)
Q Consensus 865 ~~lp~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~C~ 909 (1214)
..+..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 246 -~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 334556666666666666666666553 34556666666666653
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.5e-19 Score=203.34 Aligned_cols=192 Identities=22% Similarity=0.251 Sum_probs=104.1
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~ 663 (1214)
+.++..+..++.+|..+ +.+|++|++++|.+..++. .+..+++|++|+|++|......| .|.++++|++|+|++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666667777777654 4567777777777776653 46667777777777765544433 366667777777776654
Q ss_pred CCcc-CccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-
Q 000943 664 LRDI-HPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS- 740 (1214)
Q Consensus 664 l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~- 740 (1214)
+..+ |..+..+++|++|+|++|......|..+ .+++|++|++++|......+..++.+++|++|++++|.+..+|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 5555 4455566666666666643222223322 455555555555433322233345555555555555555544432
Q ss_pred cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecC
Q 000943 741 IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSG 778 (1214)
Q Consensus 741 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~ 778 (1214)
+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 44445555555554444333344444444444444433
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=209.90 Aligned_cols=273 Identities=13% Similarity=0.105 Sum_probs=213.2
Q ss_pred CeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCC-CC-Ccccccccccccccccccc-cccccccCccEEecCCCc
Q 000943 563 NLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAK 639 (1214)
Q Consensus 563 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~ 639 (1214)
.....+.+++.+..-+..++++|++|++++|.++.+|. .| .+.+|++|++++|.+..++ ..+..+++|++|+|++|.
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 33445666666666666677789999999999999987 44 8899999999999999875 569999999999999997
Q ss_pred CCCCCCC-CCCCCCccEEeccCccCCCccCc--cccCCCCCcEEecCCCCCCCccCc-cc-ccccccceecccccCCCCC
Q 000943 640 NLISTPD-LTGLPNLEELDLRGCTRLRDIHP--SLLLHKNLVSVNLKDCTDLTTLPN-KI-AMIHLRKLVLSGCSKLKKF 714 (1214)
Q Consensus 640 ~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~--si~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~l 714 (1214)
.....+. |.++++|++|+|++| .+..+|. .+..+++|++|++++|..++.++. .+ .+++|++|++++|......
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 6654444 889999999999996 5667776 688999999999999877887754 34 7999999999999877777
Q ss_pred ccccCCCCcceEEEeeCccCcccCccc-CCCCCCcEEecCCCCCCCcCCcccC---CCCCCCEEEecCCCCCCccCCCCc
Q 000943 715 PEVVGSMECLLELFLDGTAIEELPSSI-QLLNGLILLNLEKCTHLVGLPSTIN---DLTSLITLNLSGCSKSKNVGVESL 790 (1214)
Q Consensus 715 p~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~~l~---~L~sL~~L~ls~c~~l~~~pl~~L 790 (1214)
|..++++++|++|++++|.+..+|..+ ..+++|+.|++++|......+..+. ..+.++.++++++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~----------- 259 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV----------- 259 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-----------
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-----------
Confidence 899999999999999999999888764 4589999999999876554333222 3455666666554
Q ss_pred cccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC--cCCCCCCCEEecCCCCCCCCCcc
Q 000943 791 EGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS--LLGLCSLTKLDLSDCNLGEGAIP 868 (1214)
Q Consensus 791 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~--~~~l~~L~~L~Ls~~~l~~~~lp 868 (1214)
.++++.+..+|..+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.+. ...|
T Consensus 260 ---~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----------------i~~~~~~~l~~L~~L~L~~N~~~-~~~~ 318 (353)
T 2z80_A 260 ---KITDESLFQVMKLLNQISGLLELEFSRNQLKS-----------------VPDGIFDRLTSLQKIWLHTNPWD-CSCP 318 (353)
T ss_dssp ---BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCBC-CCHH
T ss_pred ---cccCcchhhhHHHHhcccCCCEEECCCCCCCc-----------------cCHHHHhcCCCCCEEEeeCCCcc-CcCC
Confidence 34455555567777888888888888887652 222 467888888888888874 3444
No 67
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=7.2e-21 Score=191.54 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=91.4
Q ss_pred CCccccEEEccccccccccHHHHHHHHHHhC--CCceEecCccccCCCccchHHHHHhh-hccEEEEEecCCcccchhhH
Q 000943 10 SDWKYDVFLSFRGEDTRKNFTDHLCAALDQK--GIIVFRDDKELERGKSISPGLFKAIE-ESRISIIVFSRNYAHSTWCL 86 (1214)
Q Consensus 10 ~~~~~dvFiS~~~~d~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~ai~-~s~~~i~v~S~~y~~s~wc~ 86 (1214)
..+.|||||||+++| +.||.+|+.+|+++ |+++|+|++++.+|+.|.++|.+||+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 368899999999999 58999999999985 69999999999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEEEEEeecc
Q 000943 87 DELVKIVELKST-NGQQQVIFPIFYDVEP 114 (1214)
Q Consensus 87 ~El~~~~~~~~~-~~~~~~v~Pi~~~v~p 114 (1214)
.|+..|+++... +++ +||||||++-+
T Consensus 91 ~El~~a~~~~~~~~~~--~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQK--RLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHH--TEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCC--EEEEEEEcccc
Confidence 999999987632 333 79999998654
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3e-19 Score=203.25 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=178.3
Q ss_pred eecccCccCCCCccCCCCCceEEEecCCCCCCCCCCC--Cccccccccccccccccc---ccccccccCccEEecCCCcC
Q 000943 566 MLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERM---WSGIKPLSNLKIMRLCNAKN 640 (1214)
Q Consensus 566 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l---~~~~~~L~~L~~L~Ls~~~~ 640 (1214)
.++.+++.+...+..++.+|++|+++++.++.+|..+ .+.+|++|++++|.+..+ +..+..+++|++|+|++|..
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 3455555555555566778999999999999999863 889999999999998865 56677899999999999986
Q ss_pred CCCCCCCCCCCCccEEeccCccCCCccC--ccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCC-CCcc
Q 000943 641 LISTPDLTGLPNLEELDLRGCTRLRDIH--PSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLK-KFPE 716 (1214)
Q Consensus 641 l~~~p~~~~l~~L~~L~L~~c~~l~~lp--~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~-~lp~ 716 (1214)
....+.+.++++|++|++++|. +..++ ..+..+++|++|++++|......|..+ .+++|++|++++|.... .+|.
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 6555568899999999999964 55555 378899999999999976555555555 78999999999987655 5788
Q ss_pred ccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 717 VVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 717 ~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
.+..+++|++|++++|.+..+ |..+..+++|+.|+|++|......+..+..+++|+.|++++|......
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 899999999999999999987 567899999999999998876655667888999999999888765433
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.7e-18 Score=208.42 Aligned_cols=238 Identities=18% Similarity=0.249 Sum_probs=192.5
Q ss_pred eeecccCccCCCCccCCCCCceEEEecCCCCCCCCC-CC-Ccccccccccccccccccc-cccccccCccEEecCCCcCC
Q 000943 565 RMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNL 641 (1214)
Q Consensus 565 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l 641 (1214)
+.++..+..+...+..++..+++|++++|.++.++. .| .+.+|++|+|++|.+..++ ..+..+++|++|+|++|...
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 345555555555555677889999999999998854 45 8999999999999999876 56899999999999999866
Q ss_pred CCCCC-CCCCCCccEEeccCccCCCccCc-cccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCCCccc
Q 000943 642 ISTPD-LTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEV 717 (1214)
Q Consensus 642 ~~~p~-~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~ 717 (1214)
...+. |.++++|++|+|++|. +..+|. .+..+++|++|+|++|+.+..+|... ++++|++|+|++|. +..+| .
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~ 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-N 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-C
T ss_pred ccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-c
Confidence 55554 8899999999999965 556665 67899999999999999999998754 79999999999975 55566 4
Q ss_pred cCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccC
Q 000943 718 VGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSS 796 (1214)
Q Consensus 718 ~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~ 796 (1214)
+..+++|++|+|++|.+..+ |..+..+++|+.|+|++|......|..+.++++|+.|++++|... .+|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---------- 282 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP---------- 282 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCC----------
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccC----------
Confidence 78899999999999999987 567999999999999999888777888999999999998887543 222
Q ss_pred CccccCCcccccccCCCcEEeecCCCC
Q 000943 797 RTVLRNPESSIFSMQNFEALSFLGWTL 823 (1214)
Q Consensus 797 ~~~l~~~~~~~~~l~~L~~L~l~~~~~ 823 (1214)
+..+..+++|+.|++++|++
T Consensus 283 -------~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 -------HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp -------TTSSTTCTTCCEEECCSSCE
T ss_pred -------hHHhccccCCCEEEccCCCc
Confidence 12344566666666666654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.3e-20 Score=213.02 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=129.0
Q ss_pred cccccceecccccCCCCCcccc--CCCCcceEEEeeCccCcccCcccCCC-----CCCcEEecCCCCCCCcCCcccCCCC
Q 000943 697 MIHLRKLVLSGCSKLKKFPEVV--GSMECLLELFLDGTAIEELPSSIQLL-----NGLILLNLEKCTHLVGLPSTINDLT 769 (1214)
Q Consensus 697 l~~L~~L~Ls~c~~l~~lp~~~--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~c~~l~~lp~~l~~L~ 769 (1214)
+++|++|+|++|.....+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|+|++|......|..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5566666666655555555554 66666666666666666665555544 6666666666665555556666666
Q ss_pred CCCEEEecCCCCCCc---------cCCCCccccccCCccccCCc----ccccccCCCcEEeecCCCCCCCCCcccccccC
Q 000943 770 SLITLNLSGCSKSKN---------VGVESLEGLGSSRTVLRNPE----SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSS 836 (1214)
Q Consensus 770 sL~~L~ls~c~~l~~---------~pl~~L~~L~l~~~~l~~~~----~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~ 836 (1214)
+|++|++++|...+. ..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+....+
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 245 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-------- 245 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC--------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc--------
Confidence 666666666664332 12455666666666666432 223467888888888887765321
Q ss_pred CcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 837 HNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 837 ~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
.+.+..+++|+.|+|++|.++ .+|..+. ++|+.|+|++|.++.+|. +..+++|+.|+|++++
T Consensus 246 ------~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 ------APSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------CSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ------hhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 123455788999999999886 4787776 889999999998888876 8888888888888864
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=6.4e-22 Score=239.13 Aligned_cols=345 Identities=17% Similarity=0.179 Sum_probs=180.6
Q ss_pred hhhcCcCeeeecccCccCCC--------CccCCCCCceEEEecCCCCCCCC-CCC--Ccc----ccccccccccccc---
Q 000943 557 AFLKMTNLRMLTIGNVQLPE--------GLEFLPNELRFLEWHGYPFKSLP-SNF--QPE----NFFELNMCYSRME--- 618 (1214)
Q Consensus 557 ~f~~~~~Lr~L~l~~~~l~~--------~~~~l~~~Lr~L~l~~~~l~~lp-~~~--~~~----~L~~L~L~~~~l~--- 618 (1214)
.|..+++|+.|+++++.+.. .+... ++|++|++++|.+.... ..+ .+. +|++|++++|.+.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 46777888888888776542 12222 34777777777664311 111 122 5777777777766
Q ss_pred --ccccccccccCccEEecCCCcCCCCCCC------CCCCCCccEEeccCccCCC----ccCccccCCCCCcEEecCCCC
Q 000943 619 --RMWSGIKPLSNLKIMRLCNAKNLISTPD------LTGLPNLEELDLRGCTRLR----DIHPSLLLHKNLVSVNLKDCT 686 (1214)
Q Consensus 619 --~l~~~~~~L~~L~~L~Ls~~~~l~~~p~------~~~l~~L~~L~L~~c~~l~----~lp~si~~l~~L~~L~L~~c~ 686 (1214)
.++..+..+++|+.|+|++|......+. +...++|++|+|++|..-. .++..+..+++|++|++++|.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 3456667777777777777753221110 2234567777777764322 123445556777777777754
Q ss_pred CCCcc-Cccc------ccccccceecccccCCCC----CccccCCCCcceEEEeeCccCccc------CcccCCCCCCcE
Q 000943 687 DLTTL-PNKI------AMIHLRKLVLSGCSKLKK----FPEVVGSMECLLELFLDGTAIEEL------PSSIQLLNGLIL 749 (1214)
Q Consensus 687 ~l~~l-p~~~------~l~~L~~L~Ls~c~~l~~----lp~~~~~l~~L~~L~L~~~~i~~l------p~~i~~l~~L~~ 749 (1214)
+... +..+ ..++|++|++++|..... ++..+..+++|++|++++|.+... +.....+++|++
T Consensus 182 -i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 182 -INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp -CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred -cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 3221 1111 134677777777654332 455556666777777777766532 222334666777
Q ss_pred EecCCCCCCCc----CCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccc-cccCCCcEEeecCCCCC
Q 000943 750 LNLEKCTHLVG----LPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSI-FSMQNFEALSFLGWTLP 824 (1214)
Q Consensus 750 L~L~~c~~l~~----lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~ 824 (1214)
|++++|..... ++..+..+++|++|++++|......+ ..+...+ ...++|+.|++++|.+.
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--------------~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA--------------RLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH--------------HHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH--------------HHHHHHhccCCccceeeEcCCCCCc
Confidence 77776644332 45555556667777766664321110 0000001 11235555555555433
Q ss_pred CCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcc---cccC-CCCCCcEEeCCCCCCe-----ecCccc
Q 000943 825 QSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIP---SDIG-NLCSLKELCLSKNKFI-----LLPESI 894 (1214)
Q Consensus 825 ~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp---~~l~-~l~sL~~L~L~~n~l~-----~lp~~i 894 (1214)
... ...++. +..+++|+.|+|++|.+.+.... ..+. ..++|+.|+|++|.++ .+|..+
T Consensus 327 ~~~------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 327 AAC------------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp GGG------------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred hHH------------HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 210 000111 33445666666666655321111 1111 1456666666666666 456666
Q ss_pred CCCCCCCEEeecCCcCCCc---------ccCCccccceeeecCcc
Q 000943 895 SCLSKLWIIDLEECKRLQS---------LSQLPSNIEEVRLNGCA 930 (1214)
Q Consensus 895 ~~l~~L~~L~L~~C~~L~~---------lp~lp~sL~~L~l~~C~ 930 (1214)
..+++|++|+|++|+ +.. +|.....|+.|.+.++.
T Consensus 395 ~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 395 LANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 666666666666664 221 22223456666666654
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=6.5e-19 Score=198.24 Aligned_cols=221 Identities=19% Similarity=0.190 Sum_probs=179.9
Q ss_pred eeecccCccCCCCccCCCCCceEEEecCCCCCCCCCC-C-Cccccccccccccccccc-ccccccccCccEEecCCCcCC
Q 000943 565 RMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNL 641 (1214)
Q Consensus 565 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l 641 (1214)
++++..++.+...+..++..|+.|+++++.++.+|.. | .+.+|++|++++|.+..+ +..+..+++|++|+|++|..+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3455555555555555677899999999999998864 4 789999999999999987 677999999999999999745
Q ss_pred CCC-C-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccc
Q 000943 642 IST-P-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEV 717 (1214)
Q Consensus 642 ~~~-p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~ 717 (1214)
..+ | .|.++++|++|+|++|......|..+..+++|++|+|++| .++.+|.. + .+++|++|+|++|......+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 544 3 4889999999999997655444667889999999999996 45666654 4 7999999999998544434446
Q ss_pred cCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC
Q 000943 718 VGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG 786 (1214)
Q Consensus 718 ~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p 786 (1214)
+..+++|++|++++|.+..+ |..+..+++|+.|++++|......+..+..+++|+.|++++|......+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 89999999999999999977 7789999999999999997766555668999999999999998654433
No 73
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.79 E-value=1.7e-20 Score=191.76 Aligned_cols=101 Identities=25% Similarity=0.414 Sum_probs=87.7
Q ss_pred CCCCccccEEEccccccccccHHHH-HHHHHHh--CCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchh
Q 000943 8 KVSDWKYDVFLSFRGEDTRKNFTDH-LCAALDQ--KGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTW 84 (1214)
Q Consensus 8 ~~~~~~~dvFiS~~~~d~~~~f~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~w 84 (1214)
....+.|||||||+++|+ +||.+ |+.+|++ +|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346689999999999994 89986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-hcCCCceEEEEEEEee
Q 000943 85 CLDELVKIVELK-STNGQQQVIFPIFYDV 112 (1214)
Q Consensus 85 c~~El~~~~~~~-~~~~~~~~v~Pi~~~v 112 (1214)
|+.|+..|+.+. +.+++ +||||||+.
T Consensus 108 c~~El~~a~~~~~~~~~~--~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSD--HIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC---------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCC--EEEEEEecC
Confidence 999999999654 33445 799999864
No 74
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.79 E-value=7.1e-21 Score=189.75 Aligned_cols=102 Identities=22% Similarity=0.372 Sum_probs=90.8
Q ss_pred CCccccEEEccccccccccHHHH-HHHHHHhC--CCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhH
Q 000943 10 SDWKYDVFLSFRGEDTRKNFTDH-LCAALDQK--GIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCL 86 (1214)
Q Consensus 10 ~~~~~dvFiS~~~~d~~~~f~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~ 86 (1214)
..+.|||||||+++|+ .||.+ |+.+|+++ |+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 89997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhcCCCceEEEEEEEe-eccc
Q 000943 87 DELVKIVEL-KSTNGQQQVIFPIFYD-VEPT 115 (1214)
Q Consensus 87 ~El~~~~~~-~~~~~~~~~v~Pi~~~-v~p~ 115 (1214)
.|+..|+.+ .+.+++ +||||||+ +++.
T Consensus 80 ~El~~a~~~~~~~~~~--~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 80 YELDFSHFRLFDENND--AAILILLEPIEKK 108 (149)
T ss_dssp HHSCCSCCTTCGGGTT--CCEEEESSCCCTT
T ss_pred HHHHHHHHHHHhcCCC--EEEEEEecCCChh
Confidence 999998854 344555 79999986 4443
No 75
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.79 E-value=4.3e-20 Score=185.65 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=90.2
Q ss_pred ccccEEEccccccc---------cccHHHHHHH-HHH-hCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcc
Q 000943 12 WKYDVFLSFRGEDT---------RKNFTDHLCA-ALD-QKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYA 80 (1214)
Q Consensus 12 ~~~dvFiS~~~~d~---------~~~f~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~ 80 (1214)
+.|||||||+++|+ ++.||.++.. .|+ +.|+++|+|++|+.+|+.|.++|.+||++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679999665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-hcCCCceEEEEEEEeeccc
Q 000943 81 -HSTWCLDELVKIVELK-STNGQQQVIFPIFYDVEPT 115 (1214)
Q Consensus 81 -~s~wc~~El~~~~~~~-~~~~~~~~v~Pi~~~v~p~ 115 (1214)
+|.||..|+..|+.+. ..++. +||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~--~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEI--KVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSS--EEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCC--EEEEEEeccccc
Confidence 9999999999999987 44455 899999775544
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2.1e-20 Score=213.87 Aligned_cols=258 Identities=16% Similarity=0.101 Sum_probs=159.0
Q ss_pred cccccccccccccc-cccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCC
Q 000943 610 LNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTD 687 (1214)
Q Consensus 610 L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~ 687 (1214)
++++.+.+...+.. +..+++|+.|+|++|......| .|.++++|++|+|++|. +..+++ +..+++|++|+|++| .
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-Y 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-E
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-c
Confidence 34444444433322 3445566666666665444333 26666666666666643 333332 666666666666664 2
Q ss_pred CCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCCCCcCCccc-
Q 000943 688 LTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTHLVGLPSTI- 765 (1214)
Q Consensus 688 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l- 765 (1214)
++.+| ..++|++|++++|.... ++. ..+++|++|++++|.+..++. .+..+++|+.|++++|......|..+
T Consensus 92 l~~l~---~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 92 VQELL---VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEEE---ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ccccc---CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 33333 23566666666654322 221 224567777777777766543 55666677777777665554444444
Q ss_pred CCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCC
Q 000943 766 NDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPS 845 (1214)
Q Consensus 766 ~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~ 845 (1214)
..+++|++|++++|... .++. ...+++|+.|++++|.+... .+.
T Consensus 166 ~~l~~L~~L~L~~N~l~-------------------~~~~-~~~l~~L~~L~Ls~N~l~~l----------------~~~ 209 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIY-------------------DVKG-QVVFAKLKTLDLSSNKLAFM----------------GPE 209 (317)
T ss_dssp GGTTTCCEEECTTSCCC-------------------EEEC-CCCCTTCCEEECCSSCCCEE----------------CGG
T ss_pred hccCcCCEEECCCCcCc-------------------cccc-ccccccCCEEECCCCcCCcc----------------hhh
Confidence 35666666666666532 2211 12356677777766655421 122
Q ss_pred cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEeecCCcCCCcc
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIIDLEECKRLQSL 914 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~C~~L~~l 914 (1214)
+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|+.++..
T Consensus 210 ~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 5567788888999998864 8888889999999999999888 77888889999999999887766554
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2e-20 Score=213.95 Aligned_cols=262 Identities=16% Similarity=0.114 Sum_probs=184.6
Q ss_pred ccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccc
Q 000943 630 LKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGC 708 (1214)
Q Consensus 630 L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 708 (1214)
++.++++++.....++. +..+++|++|+|++|......|..+..+++|++|+|++|. +...+....+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCC
Confidence 45555655543222222 4456788999998864433334578888888888888854 444444347778888888876
Q ss_pred cCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCC
Q 000943 709 SKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVE 788 (1214)
Q Consensus 709 ~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~ 788 (1214)
. +..++ ..++|++|++++|.+..++.. .+++|+.|++++|......|..+..+++|++|++++|......
T Consensus 91 ~-l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 160 (317)
T 3o53_A 91 Y-VQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--- 160 (317)
T ss_dssp E-EEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE---
T ss_pred c-ccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc---
Confidence 4 33333 336788888888887776643 3677777777777665555556666777777776666543221
Q ss_pred CccccccCCccccCCcccc-cccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCc
Q 000943 789 SLEGLGSSRTVLRNPESSI-FSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAI 867 (1214)
Q Consensus 789 ~L~~L~l~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~l 867 (1214)
+..+ ..+++|+.|++++|.+.. +|....+++|+.|+|++|.+.. +
T Consensus 161 ---------------~~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~l~~L~~L~Ls~N~l~~--l 206 (317)
T 3o53_A 161 ---------------FAELAASSDTLEHLNLQYNFIYD-----------------VKGQVVFAKLKTLDLSSNKLAF--M 206 (317)
T ss_dssp ---------------GGGGGGGTTTCCEEECTTSCCCE-----------------EECCCCCTTCCEEECCSSCCCE--E
T ss_pred ---------------HHHHhhccCcCCEEECCCCcCcc-----------------cccccccccCCEEECCCCcCCc--c
Confidence 2333 468999999999998753 2344568899999999999964 7
Q ss_pred ccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCC-CcccCC---ccccceeeecCcccccccc
Q 000943 868 PSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRL-QSLSQL---PSNIEEVRLNGCASLGTLS 936 (1214)
Q Consensus 868 p~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L-~~lp~l---p~sL~~L~l~~C~~L~~l~ 936 (1214)
|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+-. ..+|.. .+.|+.|++.+|..++...
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 88899999999999999999999999999999999999998755 233322 2578888888777666543
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=2.3e-18 Score=208.54 Aligned_cols=215 Identities=17% Similarity=0.121 Sum_probs=117.6
Q ss_pred cccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccccccccccee
Q 000943 626 PLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLV 704 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 704 (1214)
.+++|+.|+|++|.....+| .|+.+++|++|+|++|. +...++ ++.+++|++|+|++| .++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV---GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE---CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC---CCCcCEEE
Confidence 34467777777765544443 36667777777777654 333332 666666666666664 3333332 24455555
Q ss_pred cccccCCCCCccccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCC
Q 000943 705 LSGCSKLKKFPEVVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSK 783 (1214)
Q Consensus 705 Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~ 783 (1214)
+++|......+ ..+++|+.|++++|.+..+ |..++.+++|+.|+|++|......|..+.
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----------------- 165 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------- 165 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-----------------
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-----------------
Confidence 55443222111 1234444455544444433 22334444444444444433333333332
Q ss_pred ccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCC
Q 000943 784 NVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLG 863 (1214)
Q Consensus 784 ~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~ 863 (1214)
..+++|+.|++++|.+.. +|....+++|+.|+|++|.++
T Consensus 166 ------------------------~~l~~L~~L~Ls~N~l~~-----------------~~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 166 ------------------------ASSDTLEHLNLQYNFIYD-----------------VKGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp ------------------------GGTTTCCEEECTTSCCCE-----------------EECCCCCTTCCEEECCSSCCC
T ss_pred ------------------------hhCCcccEEecCCCcccc-----------------ccccccCCCCCEEECCCCCCC
Confidence 134444444444444321 122344677778888888775
Q ss_pred CCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 864 EGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 864 ~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
. +|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+
T Consensus 205 ~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 205 F--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp E--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred C--CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 3 6666777788888888888888888777777777777777765
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.6e-20 Score=234.52 Aligned_cols=361 Identities=14% Similarity=0.049 Sum_probs=245.9
Q ss_pred hhhcCcCeeeecccCccCCCC----ccC-CCCCceEEEecCCCCC---CCCCCC-Ccccccccccccccccc-----ccc
Q 000943 557 AFLKMTNLRMLTIGNVQLPEG----LEF-LPNELRFLEWHGYPFK---SLPSNF-QPENFFELNMCYSRMER-----MWS 622 (1214)
Q Consensus 557 ~f~~~~~Lr~L~l~~~~l~~~----~~~-l~~~Lr~L~l~~~~l~---~lp~~~-~~~~L~~L~L~~~~l~~-----l~~ 622 (1214)
.+..+++|+.|+++++.+... +.. .+.+|++|+++++... .++... .+++|++|+|++|.+.. ++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 345788999999988876432 111 3345999999887521 111111 46789999999987653 233
Q ss_pred ccccccCccEEecCCCcCCC----CCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCC---ccCcc
Q 000943 623 GIKPLSNLKIMRLCNAKNLI----STPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLT---TLPNK 694 (1214)
Q Consensus 623 ~~~~L~~L~~L~Ls~~~~l~----~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~---~lp~~ 694 (1214)
....+++|+.|+|++|.... .++. +.++++|++|+|++|. +..+|..+..+++|+.|++..+.... ..+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 35678899999998887541 1111 4568899999999964 55677788888999999998644331 22222
Q ss_pred c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCc--ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCC
Q 000943 695 I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE--ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSL 771 (1214)
Q Consensus 695 ~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL 771 (1214)
+ .+++|+.|+++++ ....+|..+..+++|++|++++|.+. .++..+..+++|+.|++.++-....++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 3 6778899988874 45667888888899999999998875 333446788999999998543333444445678889
Q ss_pred CEEEecC----------CCCCCccC-------CCCccccccCCccccCC-cccccc-cCCCcEEeecCCC---CCCCCCc
Q 000943 772 ITLNLSG----------CSKSKNVG-------VESLEGLGSSRTVLRNP-ESSIFS-MQNFEALSFLGWT---LPQSLPS 829 (1214)
Q Consensus 772 ~~L~ls~----------c~~l~~~p-------l~~L~~L~l~~~~l~~~-~~~~~~-l~~L~~L~l~~~~---~~~~l~~ 829 (1214)
++|++++ |..+.... .++|+.|++..+.++.. +..+.. +++|+.|+++++. .....|.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 9999994 66555321 67899999877777643 334443 8899999997543 2221110
Q ss_pred ccccccCCcccccCCC-cCCCCCCCEEecCCCC--CCCCCcccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEe
Q 000943 830 PYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCN--LGEGAIPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIID 904 (1214)
Q Consensus 830 ~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~--l~~~~lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~ 904 (1214)
. ..++. +.++++|+.|+|++|. +++..+......+++|+.|+|++|.++ .++..+..+++|+.|+
T Consensus 425 ~----------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 425 D----------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp H----------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred H----------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 0 00111 4457899999998775 443333333345889999999999887 4666678899999999
Q ss_pred ecCCcCCCc--ccC---CccccceeeecCcc
Q 000943 905 LEECKRLQS--LSQ---LPSNIEEVRLNGCA 930 (1214)
Q Consensus 905 L~~C~~L~~--lp~---lp~sL~~L~l~~C~ 930 (1214)
|++|+ +.. ++. -.++|+.|++++|.
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 99998 432 222 23689999999997
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7.9e-19 Score=200.23 Aligned_cols=201 Identities=24% Similarity=0.228 Sum_probs=107.5
Q ss_pred CCCCccEEeccCccCCCccCccc--cCCCCCcEEecCCCCCCCccCccc-cc-----ccccceecccccCCCCCccccCC
Q 000943 649 GLPNLEELDLRGCTRLRDIHPSL--LLHKNLVSVNLKDCTDLTTLPNKI-AM-----IHLRKLVLSGCSKLKKFPEVVGS 720 (1214)
Q Consensus 649 ~l~~L~~L~L~~c~~l~~lp~si--~~l~~L~~L~L~~c~~l~~lp~~~-~l-----~~L~~L~Ls~c~~l~~lp~~~~~ 720 (1214)
++++|++|+|++|.....+|..+ ..+++|++|+|++|. ++.+|..+ .+ ++|++|+|++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34555555555544333445444 455555555555532 33334333 22 45555555555443333455555
Q ss_pred CCcceEEEeeCccCcc---cCccc--CCCCCCcEEecCCCCCCC--cCC-cccCCCCCCCEEEecCCCCCCccCCCCccc
Q 000943 721 MECLLELFLDGTAIEE---LPSSI--QLLNGLILLNLEKCTHLV--GLP-STINDLTSLITLNLSGCSKSKNVGVESLEG 792 (1214)
Q Consensus 721 l~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~c~~l~--~lp-~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~ 792 (1214)
+++|++|++++|.+.. +|..+ ..+++|++|+|++|.... .++ ..+.++++|++|++++|......|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------ 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc------
Confidence 5556666666555432 23333 455555555555554321 111 112344555555555544332221
Q ss_pred cccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccC
Q 000943 793 LGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIG 872 (1214)
Q Consensus 793 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~ 872 (1214)
...+..+++|+.|++++|.+. . +|.... ++|+.|+|++|++.. +|. +.
T Consensus 246 -----------~~~~~~l~~L~~L~Ls~N~l~-~----------------ip~~~~-~~L~~L~Ls~N~l~~--~p~-~~ 293 (312)
T 1wwl_A 246 -----------APSCDWPSQLNSLNLSFTGLK-Q----------------VPKGLP-AKLSVLDLSYNRLDR--NPS-PD 293 (312)
T ss_dssp -----------CSCCCCCTTCCEEECTTSCCS-S----------------CCSSCC-SEEEEEECCSSCCCS--CCC-TT
T ss_pred -----------hhhhhhcCCCCEEECCCCccC-h----------------hhhhcc-CCceEEECCCCCCCC--Chh-Hh
Confidence 023344567777777777654 2 222111 678889999998865 566 88
Q ss_pred CCCCCcEEeCCCCCCe
Q 000943 873 NLCSLKELCLSKNKFI 888 (1214)
Q Consensus 873 ~l~sL~~L~L~~n~l~ 888 (1214)
.+++|+.|+|++|.++
T Consensus 294 ~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 294 ELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TSCEEEEEECTTCTTT
T ss_pred hCCCCCEEeccCCCCC
Confidence 8899999999998775
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=9.5e-19 Score=211.92 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=160.3
Q ss_pred cccccccccccccccccc-cccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 604 PENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
+.+|++|+|++|.+..++ ..+..+++|++|+|++|.....+| ++.+++|++|+|++| .+..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 346666777777766654 467888888888888887554444 888888888888886 4555543 378899999
Q ss_pred CCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcc-cCcccC-CCCCCcEEecCCCCCCCc
Q 000943 683 KDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEE-LPSSIQ-LLNGLILLNLEKCTHLVG 760 (1214)
Q Consensus 683 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~-~l~~L~~L~L~~c~~l~~ 760 (1214)
++|. +..+|.. .+++|+.|+|++|......|..++++++|+.|+|++|.+.. .|..+. .+++|+.|+|++|.....
T Consensus 107 ~~N~-l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSC-CCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCc-CCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8864 4444432 46889999999987777677788899999999999999986 455565 789999999999865433
Q ss_pred CCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCccc
Q 000943 761 LPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVA 840 (1214)
Q Consensus 761 lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~ 840 (1214)
|. ...+++|+.|++++|.. +.+|..
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l-------------------~~~~~~---------------------------------- 209 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKL-------------------AFMGPE---------------------------------- 209 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCC-------------------CEECGG----------------------------------
T ss_pred -cc-cccCCCCCEEECCCCCC-------------------CCCCHh----------------------------------
Confidence 32 33466666666665543 222222
Q ss_pred ccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEeec
Q 000943 841 LRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIIDLE 906 (1214)
Q Consensus 841 ~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~ 906 (1214)
+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..++.|+.|++.
T Consensus 210 -----~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 -----FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3344556666666666643 6666667777777777777666 566666666666666654
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=4e-19 Score=221.83 Aligned_cols=309 Identities=12% Similarity=0.046 Sum_probs=192.1
Q ss_pred CceEEEecCCCCCCCCCC-----C-Cccccccccccccccc-----ccccccccccCccEEecCCCcCCCCCCCCCCCCC
Q 000943 584 ELRFLEWHGYPFKSLPSN-----F-QPENFFELNMCYSRME-----RMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPN 652 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~-----~-~~~~L~~L~L~~~~l~-----~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~ 652 (1214)
+|++|++++|.+...... . .+.+|++|++++|.+. .++..+..+++|+.|+|++|........+.++++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 466666666654332211 1 3466677777766664 3333455677777777777654433333556677
Q ss_pred ccEEeccCccCC---CccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCC-CCccccCCCCcceEE
Q 000943 653 LEELDLRGCTRL---RDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLK-KFPEVVGSMECLLEL 727 (1214)
Q Consensus 653 L~~L~L~~c~~l---~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L 727 (1214)
|++|+++++... ...+..+..+++|+.|++.++ ....+|..+ .+++|++|+|++|.... .++..+..+++|++|
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 777777653322 233445666777777777763 344555555 56777777777776221 122345677777777
Q ss_pred EeeCccCc--ccCcccCCCCCCcEEecCC----------CCCCCc--CCcccCCCCCCCEEEecCCCCCCccC------C
Q 000943 728 FLDGTAIE--ELPSSIQLLNGLILLNLEK----------CTHLVG--LPSTINDLTSLITLNLSGCSKSKNVG------V 787 (1214)
Q Consensus 728 ~L~~~~i~--~lp~~i~~l~~L~~L~L~~----------c~~l~~--lp~~l~~L~sL~~L~ls~c~~l~~~p------l 787 (1214)
+++ +.+. .++.....+++|++|++++ |..... ++.....+++|++|+++.+......+ .
T Consensus 324 ~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 324 ETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred ecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 777 3333 2333345567777777774 444432 22223446777777775444332211 5
Q ss_pred CCccccccC----CccccCCc------ccccccCCCcEEeecCCCC--CCCCCcccccccCCcccccCCC-cCCCCCCCE
Q 000943 788 ESLEGLGSS----RTVLRNPE------SSIFSMQNFEALSFLGWTL--PQSLPSPYLRRSSHNVALRLPS-LLGLCSLTK 854 (1214)
Q Consensus 788 ~~L~~L~l~----~~~l~~~~------~~~~~l~~L~~L~l~~~~~--~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~ 854 (1214)
++|+.|+++ .+.++..| ..+..+++|+.|+++.|.. ... .+.. ...+++|+.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~---------------~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL---------------GLSYIGQYSPNVRW 467 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH---------------HHHHHHHSCTTCCE
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH---------------HHHHHHHhCccceE
Confidence 567777775 45566543 2356789999999976542 110 0111 224678999
Q ss_pred EecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCCCEEeecCCc
Q 000943 855 LDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 855 L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
|+|++|++++..++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|+
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 9999999876567777788999999999999876 356566788999999999998
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.2e-16 Score=178.61 Aligned_cols=211 Identities=17% Similarity=0.096 Sum_probs=161.6
Q ss_pred CCCCccCCCCCceEEEecCCCCCCCCC-CC-Cccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC-CCCC
Q 000943 574 LPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP-DLTG 649 (1214)
Q Consensus 574 l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p-~~~~ 649 (1214)
+..-+..+|..|++|++++|.++.+|. .| .+.+|++|++++|.+..++. .+..+++|++|+|++|......+ .|.+
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 333344566789999999999988886 44 78899999999999988775 58889999999999998666554 3888
Q ss_pred CCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCC-ccCccc-ccccccceecccccCCCCCccccCCCCcce--
Q 000943 650 LPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLT-TLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLL-- 725 (1214)
Q Consensus 650 l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~-~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~-- 725 (1214)
+++|++|++++|......+..+..+++|++|++++|.... .+|..+ .+++|++|++++|......+..+..+.+|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 9999999999865433333468889999999999865433 257666 788999999999865555555666666666
Q ss_pred --EEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCc
Q 000943 726 --ELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKN 784 (1214)
Q Consensus 726 --~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~ 784 (1214)
.|++++|.+..+|.......+|+.|++++|......+..+..+++|+.|++++|+....
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 89999999998888777777899999999875544444568899999999988876543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=9e-17 Score=175.60 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=84.5
Q ss_pred cccccceecccccCCCCCc-cccCCCCcceEEEeeCccCcccCcccCCCCCCc---EEecCCCCCCCcCC-cccCCCCCC
Q 000943 697 MIHLRKLVLSGCSKLKKFP-EVVGSMECLLELFLDGTAIEELPSSIQLLNGLI---LLNLEKCTHLVGLP-STINDLTSL 771 (1214)
Q Consensus 697 l~~L~~L~Ls~c~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~---~L~L~~c~~l~~lp-~~l~~L~sL 771 (1214)
+++|++|++++|+.+..+| ..+.++++|++|++++|.+..+|. +..+++|+ .|++++|..+..+| ..+.++++|
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 3344444444322233332 234455555566666665555554 55555555 66666663333443 336667777
Q ss_pred C-EEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCC
Q 000943 772 I-TLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLC 850 (1214)
Q Consensus 772 ~-~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~ 850 (1214)
+ .|++++|... .+| .. .+.. +
T Consensus 158 ~~~L~l~~n~l~-~i~------------------~~--------------------------------------~~~~-~ 179 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQ------------------GY--------------------------------------AFNG-T 179 (239)
T ss_dssp EEEEECCSCCCC-EEC------------------TT--------------------------------------TTTT-C
T ss_pred eeEEEcCCCCCc-ccC------------------Hh--------------------------------------hcCC-C
Confidence 7 7776665432 221 00 0112 4
Q ss_pred CCCEEecCCCC-CCCCCcccccCCC-CCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcC
Q 000943 851 SLTKLDLSDCN-LGEGAIPSDIGNL-CSLKELCLSKNKFILLPESISCLSKLWIIDLEECKR 910 (1214)
Q Consensus 851 ~L~~L~Ls~~~-l~~~~lp~~l~~l-~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~ 910 (1214)
+|+.|+|++|. +.. ..+..+..+ ++|+.|+|++|.++.+|.. .+++|+.|+++++..
T Consensus 180 ~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 56677777773 532 123456677 8888888888888888765 677888888877654
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.8e-19 Score=225.03 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=58.2
Q ss_pred CceEEEecCCCCCCCC-CCC--Ccccccccccccc-cccc--cccccccccCccEEecCCCcCCCC----CCC-CCCCCC
Q 000943 584 ELRFLEWHGYPFKSLP-SNF--QPENFFELNMCYS-RMER--MWSGIKPLSNLKIMRLCNAKNLIS----TPD-LTGLPN 652 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp-~~~--~~~~L~~L~L~~~-~l~~--l~~~~~~L~~L~~L~Ls~~~~l~~----~p~-~~~l~~ 652 (1214)
.|+.|+++++.+.... ..+ .+.+|++|++.++ .+.. ++.....+++|++|+|++|..... ++. ...+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 3555555555433111 111 2345666666555 3332 333344566666666666652211 111 124556
Q ss_pred ccEEeccCcc-CCC--ccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccc
Q 000943 653 LEELDLRGCT-RLR--DIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGC 708 (1214)
Q Consensus 653 L~~L~L~~c~-~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c 708 (1214)
|++|+|++|. .+. .++.-+..+++|++|+|++|..+..+|..+ .+++|+.|++++|
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 6666666654 010 011112334666666666665555544444 4556666654443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=7.1e-16 Score=173.51 Aligned_cols=197 Identities=23% Similarity=0.191 Sum_probs=110.1
Q ss_pred CCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEec
Q 000943 673 LHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNL 752 (1214)
Q Consensus 673 ~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 752 (1214)
++++|+.+++.+ +.++.+|..+. ++|+.|+|++|......|..+..+++|++|+|++|.+..++.. +.+++|+.|+|
T Consensus 8 ~l~~l~~l~~~~-~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDK-RNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTT-SCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccCCccEEECCC-CCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 333444444443 23334443331 3444555554443333344555556666666666666555543 55556666666
Q ss_pred CCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCccc
Q 000943 753 EKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPY 831 (1214)
Q Consensus 753 ~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 831 (1214)
++|.. ..+|..+..+++|++|++++|.. +.+ +..+..+++|+.|++++|.+....+
T Consensus 85 s~N~l-~~l~~~~~~l~~L~~L~l~~N~l-------------------~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--- 141 (290)
T 1p9a_G 85 SHNQL-QSLPLLGQTLPALTVLDVSFNRL-------------------TSLPLGALRGLGELQELYLKGNELKTLPP--- 141 (290)
T ss_dssp CSSCC-SSCCCCTTTCTTCCEEECCSSCC-------------------CCCCSSTTTTCTTCCEEECTTSCCCCCCT---
T ss_pred CCCcC-CcCchhhccCCCCCEEECCCCcC-------------------cccCHHHHcCCCCCCEEECCCCCCCccCh---
Confidence 65533 34555555555555555554432 222 1334455555555555554432100
Q ss_pred ccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCccc-ccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 832 LRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPS-DIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 832 l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~-~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
..+..+++|+.|+|++|++.. +|. .+..+++|+.|+|++|.++.+|..+..+++|+.|+|++++
T Consensus 142 ------------~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 142 ------------GLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------------TTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------------hhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 014567788888888888753 554 3567888888888888888888877777777777777654
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=9.4e-16 Score=177.68 Aligned_cols=295 Identities=15% Similarity=0.089 Sum_probs=178.0
Q ss_pred ccccccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhh---ccC
Q 000943 182 KIPAKFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREIS---EKG 258 (1214)
Q Consensus 182 ~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~---~~~ 258 (1214)
+.+.++..+..|+||++++++|.+.+..+ +++.|+|++|+|||||+++++++. . .+|+. ..... ...
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~ 72 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHI 72 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCB
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCC
Confidence 45566667788999999999999988642 689999999999999999998764 1 44443 33221 011
Q ss_pred CHHHHHHHHHHhhhc---------------CCCCC--cccccchHHHHHHHhCC-CcEEEEEeCCCCHHH---------H
Q 000943 259 GLISLQKQLLSQLLK---------------LPDSG--IWDVYDGLKMIGTRLRY-RRVLLIIDDAFDLKQ---------L 311 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~---------------~~~~~--~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~~---------l 311 (1214)
....+.+.+...+.. ..... ..+..+....+.+.... ++++|||||++.... +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 333444444433211 00000 11223334444444432 499999999987432 2
Q ss_pred HHHhcccCCCCCCcEEEEEeCCcchhhh----------c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 000943 312 ESLAGEREWFGPGSRIIITSRDEHLLTT----------Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSK 379 (1214)
Q Consensus 312 ~~l~~~~~~~~~gs~IIiTTR~~~v~~~----------~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~ 379 (1214)
..+...... .++.++|+|++....... . .....+++.+|+.+|+.+++...+....... ..+.+.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~ 229 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIE 229 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHH
Confidence 222221111 257899999987543221 1 1124789999999999999987542221111 134678
Q ss_pred HHHHHhCCChHHHHHHHhhhCC-CChHHHHHHHHHHhcCCCccHHHHHHHhHhCC---CHHHHHHHHhhcccCCCCCHHH
Q 000943 380 YVVKYSGGLPLALSVLGSFLCG-KTTKEWESSIQRLKRDSEKDILDILQISFDGL---KEIERKIFLDIACFHRGKSRDY 455 (1214)
Q Consensus 380 ~i~~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~~~~ 455 (1214)
++++.++|+|+++..++..+.. .+...+.. .+. +.+...+...+..+ ++..+.++..+|+ ...+...
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~ 300 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSL 300 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHH---HHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHH
Confidence 8999999999999999876432 22222211 111 11111122222333 7889999999998 3345566
Q ss_pred HHHHHhhC--CCc---chhhhHHhhccCceEEecCCeEE-ecHHHHHHHH
Q 000943 456 VTKILDYC--DFD---AVIGIRVLIDKSLIEISSGNRLW-MHDLLQEMGQ 499 (1214)
Q Consensus 456 l~~~~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~~-mHdLv~e~~~ 499 (1214)
+...+... +.. ....++.|++.+||... ++.|. .|++++++.+
T Consensus 301 l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 65554221 222 34668999999999987 45665 5888887753
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=8.7e-16 Score=171.11 Aligned_cols=194 Identities=20% Similarity=0.237 Sum_probs=130.7
Q ss_pred ceEEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCcc
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCT 662 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 662 (1214)
.+.++++++.++.+|..+ +.+++.|++++|.+..++. .+..+++|++|+|++|......+. |.++++|++|+|++|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 456666666666666654 3566677777777766654 467777777777777765433333 5667777777777753
Q ss_pred CCCccCc-cccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc
Q 000943 663 RLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS 739 (1214)
Q Consensus 663 ~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 739 (1214)
+..+|. .+..+++|++|+|++|. ++.+|.. + .+++|++|+|++|......+..++.+++|++|++++|.+..+|.
T Consensus 97 -l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 97 -LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp -CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 445554 34667777777777743 4444433 3 67778888887765433333447788888888888888887776
Q ss_pred c-cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCC
Q 000943 740 S-IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 740 ~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
. +..+++|+.|+|++|......+..+..+++|+.|++++|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 4 67788888888888765544444577788888888888764
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=4e-19 Score=221.86 Aligned_cols=360 Identities=15% Similarity=0.108 Sum_probs=235.3
Q ss_pred hhhhcCcCeeeecccCccCCCC----cc-CCCCCceEEEecCC-CCCC--CCCCC-Ccccccccccccccccc-----cc
Q 000943 556 KAFLKMTNLRMLTIGNVQLPEG----LE-FLPNELRFLEWHGY-PFKS--LPSNF-QPENFFELNMCYSRMER-----MW 621 (1214)
Q Consensus 556 ~~f~~~~~Lr~L~l~~~~l~~~----~~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~l~~-----l~ 621 (1214)
..+..+++|+.|+++++.+... +. .+ ++|+.|++.+| .+.. ++... .+++|++|++++|.+.. ++
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 3456788999999998776432 11 23 46999999988 3433 33333 57899999999998653 33
Q ss_pred cccccccCccEEecCCCcCCCCCCC------CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCC------CC
Q 000943 622 SGIKPLSNLKIMRLCNAKNLISTPD------LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTD------LT 689 (1214)
Q Consensus 622 ~~~~~L~~L~~L~Ls~~~~l~~~p~------~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~------l~ 689 (1214)
.....+++|+.|++++|. ..++. +.++++|++|+|++|..+..++..+..+++|+.|++..|.. +.
T Consensus 178 ~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 445578899999999986 12211 24579999999999977777888888999999999877643 22
Q ss_pred ccCccc-ccccccce-ecccccCCCCCccccCCCCcceEEEeeCccCcc--cCcccCCCCCCcEEecCCCCCCCcCCccc
Q 000943 690 TLPNKI-AMIHLRKL-VLSGCSKLKKFPEVVGSMECLLELFLDGTAIEE--LPSSIQLLNGLILLNLEKCTHLVGLPSTI 765 (1214)
Q Consensus 690 ~lp~~~-~l~~L~~L-~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 765 (1214)
.++..+ ++++|+.| .+.+. ....+|..+..+++|++|++++|.+.. ++..+..+++|+.|++++|-....++...
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 233333 56677777 33332 223455555677888888888888653 33445678888888888872212233333
Q ss_pred CCCCCCCEEEecCC--------CCCCccC-------CCCccccccCCccccCC-cccc-cccCCCcEEeec-----CCCC
Q 000943 766 NDLTSLITLNLSGC--------SKSKNVG-------VESLEGLGSSRTVLRNP-ESSI-FSMQNFEALSFL-----GWTL 823 (1214)
Q Consensus 766 ~~L~sL~~L~ls~c--------~~l~~~p-------l~~L~~L~l~~~~l~~~-~~~~-~~l~~L~~L~l~-----~~~~ 823 (1214)
..+++|++|++++| ..+.... .++|+.|.+..+.++.. ...+ ..+++|+.|+++ +|..
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 35788888888543 3332211 56788887776766543 2233 358999999998 3333
Q ss_pred CCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCe--ecCcccCCCCCC
Q 000943 824 PQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFI--LLPESISCLSKL 900 (1214)
Q Consensus 824 ~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~--~lp~~i~~l~~L 900 (1214)
....+.. ..++. +.++++|+.|+|++ ++.+..++.....+++|+.|+|++|.++ .++.....+++|
T Consensus 415 l~~~~~~----------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 415 LTLEPLD----------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp TTCCCTH----------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ccCCchh----------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 3221110 01111 44578999999987 5544333322234889999999999886 222223668999
Q ss_pred CEEeecCCcCCCc-----ccCCccccceeeecCccc
Q 000943 901 WIIDLEECKRLQS-----LSQLPSNIEEVRLNGCAS 931 (1214)
Q Consensus 901 ~~L~L~~C~~L~~-----lp~lp~sL~~L~l~~C~~ 931 (1214)
+.|+|++|+. .. +..-.++|+.|++++|+.
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999985 22 112236899999999975
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.6e-16 Score=176.01 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=77.7
Q ss_pred EEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCC
Q 000943 587 FLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 587 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l 664 (1214)
..+..+..+..+|..+ +.+|++|++++|.+..++. .+..+++|++|+|++|......+ .|.++++|++|+|++|...
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3455566667777755 3567777777777776654 46667777777777765444333 3666666777776665332
Q ss_pred CccCccccCCCCCcEEecCCCCCCCccCc-cc-ccccccceecccccCCC-CCccccCCCCcceEEEeeCccCcc
Q 000943 665 RDIHPSLLLHKNLVSVNLKDCTDLTTLPN-KI-AMIHLRKLVLSGCSKLK-KFPEVVGSMECLLELFLDGTAIEE 736 (1214)
Q Consensus 665 ~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~-~lp~~~~~l~~L~~L~L~~~~i~~ 736 (1214)
...+..+..+++|++|++++|. +..++. .+ .+++|++|++++|.... .+|..++++++|++|++++|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 2223445566666666666542 222222 12 34444444444433222 133444444444444444444443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=3.9e-16 Score=180.92 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=157.0
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccccccccccccc-cccccCccEEecCCCcCCCCCCC--CCCCCCccEEeccCcc
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTPD--LTGLPNLEELDLRGCT 662 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~ 662 (1214)
+.++.+++.++++|..+ +.++++|+|++|+|+.+|.+ +..+++|++|+|++|+.+..+|. |.++++|+++.+.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45677888899999877 67899999999999999875 89999999999999988776654 7899998887766667
Q ss_pred CCCccCc-cccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCCCccc-cCCC-CcceEEEeeCccCccc
Q 000943 663 RLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEV-VGSM-ECLLELFLDGTAIEEL 737 (1214)
Q Consensus 663 ~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~-~~~l-~~L~~L~L~~~~i~~l 737 (1214)
.+..+++ .+..+++|++|++++| .++.+|... ...++..|++.++..+..+|.. +..+ ..++.|++++|.|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 7888854 5788999999999985 566676644 5667788888888878777653 4444 4689999999999999
Q ss_pred CcccCCCCCCcEEecCCCCCCCcCCc-ccCCCCCCCEEEecCCC
Q 000943 738 PSSIQLLNGLILLNLEKCTHLVGLPS-TINDLTSLITLNLSGCS 780 (1214)
Q Consensus 738 p~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~sL~~L~ls~c~ 780 (1214)
|..+....+|+.|++.+|+.+..+|. .+.++++|+.|++++|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 99888888999999998888888885 46778888888877764
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=4.7e-16 Score=176.76 Aligned_cols=192 Identities=20% Similarity=0.271 Sum_probs=125.8
Q ss_pred ccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEE
Q 000943 671 LLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILL 750 (1214)
Q Consensus 671 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 750 (1214)
...+++|+.|++++| .++.+|....+++|++|+|++|. +..++. +..+++|++|++++|.+..++ .+..+++|+.|
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 345667777777774 45556644466777777777653 444444 666777777777777776664 46666777777
Q ss_pred ecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcc
Q 000943 751 NLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSP 830 (1214)
Q Consensus 751 ~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 830 (1214)
++++|... .+|. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+..
T Consensus 113 ~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~-------------------l~~~~~-l~~l~~L~~L~l~~n~l~~----- 165 (308)
T 1h6u_A 113 DLTSTQIT-DVTP-LAGLSNLQVLYLDLNQ-------------------ITNISP-LAGLTNLQYLSIGNAQVSD----- 165 (308)
T ss_dssp ECTTSCCC-CCGG-GTTCTTCCEEECCSSC-------------------CCCCGG-GGGCTTCCEEECCSSCCCC-----
T ss_pred ECCCCCCC-Cchh-hcCCCCCCEEECCCCc-------------------cCcCcc-ccCCCCccEEEccCCcCCC-----
Confidence 77666533 2333 5566666666665554 333333 5677778888887776542
Q ss_pred cccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 831 YLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 831 ~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
++.+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|+
T Consensus 166 ------------~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 166 ------------LTPLANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ------------CGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ------------ChhhcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 2236667788888888888754 443 677788888888888888777 37778888888887764
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=2.1e-16 Score=176.29 Aligned_cols=170 Identities=24% Similarity=0.249 Sum_probs=94.6
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~ 684 (1214)
.++..+++..+.+..+ .....+.+|+.|++++|. +..++.+..+++|++|+|++|. +..+ +.+..+++|++|+|++
T Consensus 19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNK-LHDI-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSC-CCCC-GGGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCC-CCCc-hhhcCCCCCCEEECCC
Confidence 4455556666655544 235567777888887775 3455667777777777777754 4443 3566667777777766
Q ss_pred CCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCCCCcC
Q 000943 685 CTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTHLVGL 761 (1214)
Q Consensus 685 c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~l 761 (1214)
| .++.+|.. + .+++|++|++++|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|......
T Consensus 95 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 N-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred C-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 4 34444432 2 455566666665544333333455555666666666655555443 345555555555555433333
Q ss_pred CcccCCCCCCCEEEecCC
Q 000943 762 PSTINDLTSLITLNLSGC 779 (1214)
Q Consensus 762 p~~l~~L~sL~~L~ls~c 779 (1214)
+..+..+++|++|++++|
T Consensus 174 ~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCccCCEEECCCC
Confidence 333444455555544444
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=6.9e-16 Score=173.61 Aligned_cols=194 Identities=20% Similarity=0.189 Sum_probs=153.7
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccc-cccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCcc
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMW-SGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~ 662 (1214)
+++.+++.++.++.+|..+ +.+++.|++++|.+..++ ..+..+++|+.|+|++|... .++..+.+++|++|+|++|
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHN- 87 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSS-
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCEEECCCC-
Confidence 3666777777777777665 367888888888888664 55888889999999888644 4444578889999999985
Q ss_pred CCCccCccccCCCCCcEEecCCCCCCCccCc-cc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc
Q 000943 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLPN-KI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS 740 (1214)
Q Consensus 663 ~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~ 740 (1214)
.+..+|..+..+++|++|+|++| .++.+|. .+ .+++|++|+|++|......+..+..+++|+.|+|++|.+..+|..
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 57788888888999999999885 5666664 34 788999999999765554455678899999999999999999875
Q ss_pred -cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCC
Q 000943 741 -IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 741 -i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
+..+++|+.|+|++|.. ..+|..+..+++|+.|++++|+..
T Consensus 167 ~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCcc
Confidence 47799999999998754 578888888999999999998753
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=1.6e-17 Score=191.63 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=71.2
Q ss_pred cCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCc-cCccccCCCCCcEEecCCCCCCCccCccc-ccccccceec
Q 000943 628 SNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRD-IHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVL 705 (1214)
Q Consensus 628 ~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~-lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 705 (1214)
.+++.|++++|......+.+..+++|++|+|++|..... ++..+..+++|++|+|++|......|..+ .+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455555555555444444445555555555555442212 44444555555555555543222233322 3455555555
Q ss_pred ccccCCC--CCccccCCCCcceEEEeeCc-cCcc--cCcccCCCC-CCcEEecCCCC-CC--CcCCcccCCCCCCCEEEe
Q 000943 706 SGCSKLK--KFPEVVGSMECLLELFLDGT-AIEE--LPSSIQLLN-GLILLNLEKCT-HL--VGLPSTINDLTSLITLNL 776 (1214)
Q Consensus 706 s~c~~l~--~lp~~~~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~c~-~l--~~lp~~l~~L~sL~~L~l 776 (1214)
++|..+. .++..+.++++|++|++++| .+.. ++..+..++ +|++|++++|. .+ ..+|..+.++++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 5553333 23444444555555555555 4442 344444455 55555555542 11 223333444455555555
Q ss_pred cCCC
Q 000943 777 SGCS 780 (1214)
Q Consensus 777 s~c~ 780 (1214)
++|.
T Consensus 230 ~~~~ 233 (336)
T 2ast_B 230 SDSV 233 (336)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 4444
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=2.7e-16 Score=175.42 Aligned_cols=200 Identities=22% Similarity=0.164 Sum_probs=120.7
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCc-cccCCCCCcEEecC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVSVNLK 683 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~ 683 (1214)
.+|+.|++.++.+..++ ++..+++|++|+|++|.. ..++.+..+++|++|+|++|. +..++. .+..+++|++|+|+
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECC
Confidence 34444444444444332 345566666666666543 234456666666666666643 334433 34566666666666
Q ss_pred CCCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCCCCc
Q 000943 684 DCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTHLVG 760 (1214)
Q Consensus 684 ~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~ 760 (1214)
+|. ++.+|.. + .+++|++|++++|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|.....
T Consensus 118 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 643 3444432 2 566777777776644333344467777788888888887777654 46778888888888776665
Q ss_pred CCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccC-Cccccccc
Q 000943 761 LPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRN-PESSIFSM 810 (1214)
Q Consensus 761 lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~-~~~~~~~l 810 (1214)
.|..+..+++|+.|++++|...... ++|+.|++..|.+.+ +|.+++.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~~--~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCTC--PGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCT--TTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHHhCCcCCCEEEccCCCccccC--cHHHHHHHHHHhCCCcccCccccc
Confidence 5566778888888888888665443 356666666666553 35555444
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.9e-15 Score=168.27 Aligned_cols=194 Identities=21% Similarity=0.268 Sum_probs=163.2
Q ss_pred cCeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCC-CC-Ccccccccccccccccccccc-cccccCccEEecCCC
Q 000943 562 TNLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPS-NF-QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNA 638 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~ 638 (1214)
.+++.++++++.+..-+..+|..++.|+++++.+..+|. .| .+.+|++|++++|.+..++.. +..+++|++|+|++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 346778888887776666678889999999999999987 45 889999999999999999876 588999999999999
Q ss_pred cCCCCCCC-CCCCCCccEEeccCccCCCccC-ccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCC
Q 000943 639 KNLISTPD-LTGLPNLEELDLRGCTRLRDIH-PSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKF 714 (1214)
Q Consensus 639 ~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~l 714 (1214)
......+. |.++++|++|+|++|. +..++ ..+..+++|++|+|++| .++.+|.. + .+++|++|+|++|......
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 86655544 7899999999999965 45554 45789999999999996 56777765 3 7999999999998655555
Q ss_pred ccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCC
Q 000943 715 PEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTH 757 (1214)
Q Consensus 715 p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~ 757 (1214)
+..+..+++|++|++++|.+..+|.. +..+++|+.|+|++|+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55689999999999999999999875 78899999999999864
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=179.05 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=133.6
Q ss_pred ccccccceecccccCCCCCcccc--CCCCcceEEEeeCccCcccC-----cccCCCCCCcEEecCCCCCCCcCCcccCCC
Q 000943 696 AMIHLRKLVLSGCSKLKKFPEVV--GSMECLLELFLDGTAIEELP-----SSIQLLNGLILLNLEKCTHLVGLPSTINDL 768 (1214)
Q Consensus 696 ~l~~L~~L~Ls~c~~l~~lp~~~--~~l~~L~~L~L~~~~i~~lp-----~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L 768 (1214)
.+++|++|++++|......|..+ +.+++|++|++++|.+.... ..+..+++|++|+|++|......|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 44557777777766666666665 67777777777777776421 223457777777777777666666677777
Q ss_pred CCCCEEEecCCCCCCc---------cCCCCccccccCCccccCCccc----ccccCCCcEEeecCCCCCCCCCccccccc
Q 000943 769 TSLITLNLSGCSKSKN---------VGVESLEGLGSSRTVLRNPESS----IFSMQNFEALSFLGWTLPQSLPSPYLRRS 835 (1214)
Q Consensus 769 ~sL~~L~ls~c~~l~~---------~pl~~L~~L~l~~~~l~~~~~~----~~~l~~L~~L~l~~~~~~~~l~~~~l~~~ 835 (1214)
++|++|++++|..... ..+++|+.|++++|.++.++.. +..+++|++|++++|.+....|.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~------ 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP------ 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS------
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh------
Confidence 7777777777765431 1256677777777777665442 46778888888888877654221
Q ss_pred CCcccccCCCcCCCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 836 SHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 836 ~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
.+..+..+++|++|+|++|++. .+|..+. ++|+.|+|++|.++.+|. +..+++|+.|+|++++
T Consensus 243 ------~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 243 ------SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ------hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 1112233468888888888886 3777664 788888888888887765 6777888888888764
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.2e-15 Score=173.27 Aligned_cols=188 Identities=17% Similarity=0.277 Sum_probs=142.4
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
+|+.|++.++.++.+|....+.+|++|++++|.+..++. +..+++|++|+|++|. +..++.+..+++|++|+|++|.
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~- 118 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ- 118 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-
Confidence 467777777777777754477888888888888888777 8888888888888886 4456678888888888888864
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCC
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQL 743 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 743 (1214)
+..++. +..+++|++|++++| .++.++....+++|++|++++|. +..++. +..+++|+.|++++|.+..++. +..
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 193 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDISP-LAS 193 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcChh-hcC
Confidence 555654 788888888888885 56666664478888888888874 445555 7888888888888888888775 777
Q ss_pred CCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCC
Q 000943 744 LNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 744 l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
+++|++|+|++|.... ++ .+..+++|+.|++++|..
T Consensus 194 l~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEEEEE
T ss_pred CCCCCEEEccCCccCc-cc-cccCCCCCCEEEccCCee
Confidence 8888888888876543 33 267788888888777653
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=3.2e-15 Score=173.64 Aligned_cols=294 Identities=16% Similarity=0.157 Sum_probs=170.8
Q ss_pred cccccccccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhh--ccCCH
Q 000943 183 IPAKFDIFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREIS--EKGGL 260 (1214)
Q Consensus 183 ~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~--~~~~~ 260 (1214)
.+.+...++.|+||++++++|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+. ..... .....
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~ 74 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISY 74 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCH
Confidence 44555567889999999999998 743 589999999999999999999876532 34543 33220 00122
Q ss_pred HHHHHHHHHhh-------------hcCC------CCC---------cccccchHHHHHHHhCCCcEEEEEeCCCCHH---
Q 000943 261 ISLQKQLLSQL-------------LKLP------DSG---------IWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--- 309 (1214)
Q Consensus 261 ~~l~~~ll~~l-------------l~~~------~~~---------~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--- 309 (1214)
......+...+ +..- ... ..........+.+... ++++|||||++..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 22222222211 1100 000 0111222223322211 49999999998743
Q ss_pred --HHHHHhcccCCCCCCcEEEEEeCCcchhhh----------c-C-ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHH
Q 000943 310 --QLESLAGEREWFGPGSRIIITSRDEHLLTT----------Y-G-VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYE 375 (1214)
Q Consensus 310 --~l~~l~~~~~~~~~gs~IIiTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 375 (1214)
++..+........++.++|+|+|....... . + ....+++.+|+.+|+.+++...+.......+..
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~- 232 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY- 232 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-
Confidence 221221111111247899999997643221 1 1 125789999999999999987542211111111
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhhCC-CChHHHHHHHHHHhcCCCccHHHHHHHhH---hCCCHHHHHHHHhhcccCCCC
Q 000943 376 QLSKYVVKYSGGLPLALSVLGSFLCG-KTTKEWESSIQRLKRDSEKDILDILQISF---DGLKEIERKIFLDIACFHRGK 451 (1214)
Q Consensus 376 ~~~~~i~~~~~GlPLAl~~lg~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy---~~L~~~~k~~fl~la~f~~~~ 451 (1214)
..+++.++|+|+++..++..+.. .+..+|... +.......+...+...+ ..|++.++.++..+|+ . .
T Consensus 233 ---~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 233 ---EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp ---HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred ---HHHHHHhCCCHHHHHHHHHHHccccchHHHHHH---HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 77999999999999999877642 233333221 11000011111222111 1688999999999998 3 3
Q ss_pred CHHHHHHHHh-hCC--C---cchhhhHHhhccCceEEecCCeEE-ecHHHHHHH
Q 000943 452 SRDYVTKILD-YCD--F---DAVIGIRVLIDKSLIEISSGNRLW-MHDLLQEMG 498 (1214)
Q Consensus 452 ~~~~l~~~~~-~~~--~---~~~~~l~~L~~~sLi~~~~~~~~~-mHdLv~e~~ 498 (1214)
+...+..... ..| . .....++.|++.+||...+ +.|. .|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 5555554321 112 2 2356789999999999874 5555 689988864
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.6e-17 Score=189.83 Aligned_cols=176 Identities=22% Similarity=0.260 Sum_probs=108.1
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCC-CC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLIS-TP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~-~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
.+++.|++++|.+...+..+..+++|+.|+|++|..... ++ .+..+++|++|+|++|......+..+..+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455666666666665555555666666666666653322 22 2556666777777666533345556666677777777
Q ss_pred CCCCCCCc--cCccc-ccccccceecccccCCCC--CccccCCCC-cceEEEeeCccC----cccCcccCCCCCCcEEec
Q 000943 683 KDCTDLTT--LPNKI-AMIHLRKLVLSGCSKLKK--FPEVVGSME-CLLELFLDGTAI----EELPSSIQLLNGLILLNL 752 (1214)
Q Consensus 683 ~~c~~l~~--lp~~~-~l~~L~~L~Ls~c~~l~~--lp~~~~~l~-~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L 752 (1214)
++|..++. +|..+ .+++|++|++++|..+.. ++..+..++ +|++|++++|.+ ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 77655542 44433 566777777777633332 455566666 777777777743 355666666777777777
Q ss_pred CCCCC-CCcCCcccCCCCCCCEEEecCCC
Q 000943 753 EKCTH-LVGLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 753 ~~c~~-l~~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
++|.. ....+..+.++++|++|++++|.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 77763 33455566777777777777775
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=9.4e-16 Score=167.48 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=129.4
Q ss_pred CCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCccCCCccCc-c
Q 000943 595 FKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCTRLRDIHP-S 670 (1214)
Q Consensus 595 l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~-s 670 (1214)
++.+|. -+.+|++|++++|+++.++. .+..+++|++|++++|+.+..++ .|.++++|++|+|++|+.+..++. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 555665 24466677777777776665 46677777777777775333333 366777777777777556666654 4
Q ss_pred ccCCCCCcEEecCCCCCCCccCccccccccc---ceecccccCCCCCcc-ccCCCCcce-EEEeeCccCcccCcccCCCC
Q 000943 671 LLLHKNLVSVNLKDCTDLTTLPNKIAMIHLR---KLVLSGCSKLKKFPE-VVGSMECLL-ELFLDGTAIEELPSSIQLLN 745 (1214)
Q Consensus 671 i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~Ls~c~~l~~lp~-~~~~l~~L~-~L~L~~~~i~~lp~~i~~l~ 745 (1214)
+..+++|++|++++| .++.+|....+++|+ +|++++|..+..+|. .+..+++|+ +|++++|.+..+|......+
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 567777777777774 355566633566666 777777644555543 467777777 77777777777776655557
Q ss_pred CCcEEecCCCCCCCcCC-cccCCC-CCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCC
Q 000943 746 GLILLNLEKCTHLVGLP-STINDL-TSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGW 821 (1214)
Q Consensus 746 ~L~~L~L~~c~~l~~lp-~~l~~L-~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~ 821 (1214)
+|+.|++++|..+..+| ..+..+ ++|+.|++++|.. +.+|.. .+++|+.|.+.++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-------------------~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-------------------TALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-------------------CCCCCT--TCTTCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-------------------ccCChh--HhccCceeeccCc
Confidence 77777777775444543 445666 6677666665543 333332 4566777776655
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=3.7e-15 Score=172.72 Aligned_cols=233 Identities=19% Similarity=0.225 Sum_probs=129.1
Q ss_pred cEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCc-cccCCCCCcEEecCCCCCCCccCccc--ccccccceecc
Q 000943 631 KIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLS 706 (1214)
Q Consensus 631 ~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls 706 (1214)
+.++.++++ +..+|. + .++|++|+|++| .++.+|. .+.++++|++|+|++|..++.+|... ++++|..+.+.
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 345555543 333432 3 246777777773 4666665 45667777777777766556555432 45555544444
Q ss_pred cccCCCCC-ccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCCCCcCCcc-cCCCCCCCEEEecCCCCCC
Q 000943 707 GCSKLKKF-PEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTHLVGLPST-INDLTSLITLNLSGCSKSK 783 (1214)
Q Consensus 707 ~c~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~sL~~L~ls~c~~l~ 783 (1214)
+++.+..+ |..+..+++|++|++++|.+..+|.. +....++..|++.++..+..+|.. +..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 33444443 34456666666666666666555432 223334444444444333333321 11111
Q ss_pred ccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC-CcCCCCCCCEEecCCCCC
Q 000943 784 NVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP-SLLGLCSLTKLDLSDCNL 862 (1214)
Q Consensus 784 ~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp-~~~~l~~L~~L~Ls~~~l 862 (1214)
..++.|++++|.+.. +| ......+|+.|++++|+.
T Consensus 154 ---------------------------~~l~~L~L~~N~i~~-----------------i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 154 ---------------------------FESVILWLNKNGIQE-----------------IHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp ---------------------------SSCEEEECCSSCCCE-----------------ECTTSSTTEEEEEEECTTCTT
T ss_pred ---------------------------hhhhhhccccccccC-----------------CChhhccccchhHHhhccCCc
Confidence 123334444333321 11 122334677777765443
Q ss_pred CCCCccc-ccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCcCCCcccCCc--cccceeeecC
Q 000943 863 GEGAIPS-DIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECKRLQSLSQLP--SNIEEVRLNG 928 (1214)
Q Consensus 863 ~~~~lp~-~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~~L~~lp~lp--~sL~~L~l~~ 928 (1214)
.. .+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|.+++.+|.+. ++|+.+++.+
T Consensus 190 l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LE-ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CC-CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cc-CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 22 3554 467888899999998888888864 37788888888888888888654 5677766643
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=5e-17 Score=191.27 Aligned_cols=256 Identities=17% Similarity=0.141 Sum_probs=124.5
Q ss_pred ccccccccccccccccccccCccEEecCCCcCCCCC-----CCCCCCCCccEEeccCcc--CCC-ccCccc-------cC
Q 000943 609 ELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLIST-----PDLTGLPNLEELDLRGCT--RLR-DIHPSL-------LL 673 (1214)
Q Consensus 609 ~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~-----p~~~~l~~L~~L~L~~c~--~l~-~lp~si-------~~ 673 (1214)
...+....+..++..+..+++|+.|+|++|...... ..+..+++|++|+|++|. .+. .+|..+ ..
T Consensus 13 ~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 13 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp ESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 334444555566667777788888888887644321 125667777777777752 111 223222 45
Q ss_pred CCCCcEEecCCCCCCC----ccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCC----
Q 000943 674 HKNLVSVNLKDCTDLT----TLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLL---- 744 (1214)
Q Consensus 674 l~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l---- 744 (1214)
+++|++|+|++|..-. .+|..+ .+++|++|+|++|......+. .++..+..+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAVNK 153 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhhhh
Confidence 5666666666543222 133333 344444444444432111111 111122222
Q ss_pred -----CCCcEEecCCCCCC-CcCC---cccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCC-cccccccCCCc
Q 000943 745 -----NGLILLNLEKCTHL-VGLP---STINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNP-ESSIFSMQNFE 814 (1214)
Q Consensus 745 -----~~L~~L~L~~c~~l-~~lp---~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~ 814 (1214)
++|++|+|++|... ..+| ..+..+++|++|++++|..... .+..+ +..+..+++|+
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------------g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--------------GIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH--------------HHHHHHHTTGGGCTTCC
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh--------------HHHHHHHHHhhcCCCcc
Confidence 45555555554433 2222 2344455556666655543210 00000 11233444444
Q ss_pred EEeecCCCCCCCCCcccccccCCcccccCCC-cCCCCCCCEEecCCCCCCCC---Cccccc--CCCCCCcEEeCCCCCCe
Q 000943 815 ALSFLGWTLPQSLPSPYLRRSSHNVALRLPS-LLGLCSLTKLDLSDCNLGEG---AIPSDI--GNLCSLKELCLSKNKFI 888 (1214)
Q Consensus 815 ~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~-~~~l~~L~~L~Ls~~~l~~~---~lp~~l--~~l~sL~~L~L~~n~l~ 888 (1214)
.|++++|.+... ....+|. +..+++|+.|+|++|.+... .+|..+ +.+++|+.|+|++|.++
T Consensus 220 ~L~Ls~n~l~~~------------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 220 VLDLQDNTFTHL------------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp EEECCSSCCHHH------------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred EEECcCCCCCcH------------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 444444433100 0001111 34456677777777766431 134444 33677777777777776
Q ss_pred e-----cCccc-CCCCCCCEEeecCCc
Q 000943 889 L-----LPESI-SCLSKLWIIDLEECK 909 (1214)
Q Consensus 889 ~-----lp~~i-~~l~~L~~L~L~~C~ 909 (1214)
. +|..+ .++++|++|+|++|+
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5 66666 456777777777664
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=6.9e-17 Score=190.07 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=134.9
Q ss_pred CCCCCCC-Ccccccccccccccccc-----cccccccccCccEEecCCCcCCC---CCCC--------CCCCCCccEEec
Q 000943 596 KSLPSNF-QPENFFELNMCYSRMER-----MWSGIKPLSNLKIMRLCNAKNLI---STPD--------LTGLPNLEELDL 658 (1214)
Q Consensus 596 ~~lp~~~-~~~~L~~L~L~~~~l~~-----l~~~~~~L~~L~~L~Ls~~~~l~---~~p~--------~~~l~~L~~L~L 658 (1214)
..++..+ .+.+|++|+|++|.+.. ++..+..+++|++|+|++|.... .+|. +..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444433 45677788888887763 44557788999999998874321 2221 367899999999
Q ss_pred cCccCCC----ccCccccCCCCCcEEecCCCCCCCc----cCccc-cc---------ccccceecccccCC-CCCc---c
Q 000943 659 RGCTRLR----DIHPSLLLHKNLVSVNLKDCTDLTT----LPNKI-AM---------IHLRKLVLSGCSKL-KKFP---E 716 (1214)
Q Consensus 659 ~~c~~l~----~lp~si~~l~~L~~L~L~~c~~l~~----lp~~~-~l---------~~L~~L~Ls~c~~l-~~lp---~ 716 (1214)
++|..-. .+|..+..+++|++|+|++|..-.. ++..+ .+ ++|++|+|++|... ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9975443 3677788899999999999764221 22222 23 79999999988754 3444 4
Q ss_pred ccCCCCcceEEEeeCccCc------ccCcccCCCCCCcEEecCCCCCC----CcCCcccCCCCCCCEEEecCCCCCC
Q 000943 717 VVGSMECLLELFLDGTAIE------ELPSSIQLLNGLILLNLEKCTHL----VGLPSTINDLTSLITLNLSGCSKSK 783 (1214)
Q Consensus 717 ~~~~l~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~c~~l----~~lp~~l~~L~sL~~L~ls~c~~l~ 783 (1214)
.+..+++|++|++++|.+. -+|..+..+++|+.|+|++|... ..+|..+..+++|++|++++|....
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 5667888999999999887 23447888899999999998764 5677778888999999998887543
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=170.09 Aligned_cols=199 Identities=18% Similarity=0.108 Sum_probs=97.0
Q ss_pred cCccEEecCCCcCCCCCCC-C--CCCCCccEEeccCccCCCccC----ccccCCCCCcEEecCCCCCCCccCccc-cccc
Q 000943 628 SNLKIMRLCNAKNLISTPD-L--TGLPNLEELDLRGCTRLRDIH----PSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIH 699 (1214)
Q Consensus 628 ~~L~~L~Ls~~~~l~~~p~-~--~~l~~L~~L~L~~c~~l~~lp----~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 699 (1214)
.+|+.|+|++|......|. + ..+++|++|+|++|......+ ..+..+++|++|+|++|......|..+ .+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4456666665554444333 2 555566666666544332222 122345555555555543322222222 4555
Q ss_pred ccceecccccCCCC--C--ccccCCCCcceEEEeeCccCcccCcc----cCCCCCCcEEecCCCCCCCcCCcccCCC---
Q 000943 700 LRKLVLSGCSKLKK--F--PEVVGSMECLLELFLDGTAIEELPSS----IQLLNGLILLNLEKCTHLVGLPSTINDL--- 768 (1214)
Q Consensus 700 L~~L~Ls~c~~l~~--l--p~~~~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~c~~l~~lp~~l~~L--- 768 (1214)
|++|+|++|..... + +..++.+++|++|++++|.++.+|.. +..+++|++|+|++|......|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 55555555443221 1 11224555555555555555544331 3445566666666655544445444443
Q ss_pred CCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCC
Q 000943 769 TSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLG 848 (1214)
Q Consensus 769 ~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~ 848 (1214)
++|++|++++| .++.+|..+. ++|+.|++++|.+.+ +|.+..
T Consensus 251 ~~L~~L~Ls~N-------------------~l~~lp~~~~--~~L~~L~Ls~N~l~~-----------------~~~~~~ 292 (310)
T 4glp_A 251 SALNSLNLSFA-------------------GLEQVPKGLP--AKLRVLDLSSNRLNR-----------------APQPDE 292 (310)
T ss_dssp TTCCCEECCSS-------------------CCCSCCSCCC--SCCSCEECCSCCCCS-----------------CCCTTS
T ss_pred CcCCEEECCCC-------------------CCCchhhhhc--CCCCEEECCCCcCCC-----------------Cchhhh
Confidence 34444444444 3333444332 566666666665542 223455
Q ss_pred CCCCCEEecCCCCCCC
Q 000943 849 LCSLTKLDLSDCNLGE 864 (1214)
Q Consensus 849 l~~L~~L~Ls~~~l~~ 864 (1214)
+++|+.|+|++|.+++
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 6677777777777654
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.2e-14 Score=156.49 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=99.4
Q ss_pred ceEEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
.+.++++++.++.+|..+. .+++.|+|++|.+..++. .+..+++|++|+|++|......+.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------- 77 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG----------------- 77 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-----------------
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh-----------------
Confidence 4556666666666665542 455555555555554433 244455555555555443333222
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc-c
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-S 740 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~ 740 (1214)
.+..+++|++|+|++| .++.+|.. + .+++|++|+|++|......+..+..+++|++|+|++|.+..+|. .
T Consensus 78 ------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 78 ------VFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp ------TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ------HhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence 2344444444444442 23333322 1 45555555555543332223345677777777777777777776 4
Q ss_pred cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCC
Q 000943 741 IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 741 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
+..+++|+.|+|++|......+..+..+++|+.|++++|...
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 777788888888887665555556777888888888877653
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=5.7e-15 Score=180.27 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=86.4
Q ss_pred CeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCC
Q 000943 563 NLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLI 642 (1214)
Q Consensus 563 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~ 642 (1214)
+|+.|+++++.+.+-...++.+|++|++++|.++.+| . .+.+|+.|++++|.+..+|. +.. +|+.|+|++|....
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 5666666665554433333445555555555555555 2 24455555555555555544 332 55555555554322
Q ss_pred CCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCC
Q 000943 643 STPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSME 722 (1214)
Q Consensus 643 ~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~ 722 (1214)
+|. .+++|++|+|++| .+.. +|. .+++|++|+|++|. +..+|. +. +
T Consensus 135 -lp~--~l~~L~~L~Ls~N-~l~~------------------------lp~--~l~~L~~L~Ls~N~-L~~lp~-l~--~ 180 (571)
T 3cvr_A 135 -LPE--LPALLEYINADNN-QLTM------------------------LPE--LPTSLEVLSVRNNQ-LTFLPE-LP--E 180 (571)
T ss_dssp -CCC--CCTTCCEEECCSS-CCSC------------------------CCC--CCTTCCEEECCSSC-CSCCCC-CC--T
T ss_pred -CCC--cCccccEEeCCCC-ccCc------------------------CCC--cCCCcCEEECCCCC-CCCcch-hh--C
Confidence 333 3445555555543 2333 443 33444555554443 222444 33 4
Q ss_pred cceEEEeeCccCcccCcccCCCCCC-------cEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCcc
Q 000943 723 CLLELFLDGTAIEELPSSIQLLNGL-------ILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 723 ~L~~L~L~~~~i~~lp~~i~~l~~L-------~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
+|+.|+|++|.|..+|. +.. +| +.|+|++|.. ..+|..+..+++|+.|++++|......
T Consensus 181 ~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp TCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 45555555555555554 332 44 5555555432 245555555555555555555544433
No 109
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=1e-13 Score=164.53 Aligned_cols=285 Identities=15% Similarity=0.076 Sum_probs=168.0
Q ss_pred cccCcccchhhHHHHHHHH-hhh--c--CCcEEEEE--EecCCchHHHHHHHHHHHHhcc-----cCc-cEEEEeehhhh
Q 000943 189 IFKDLVGIDSRWKKLRFLI-DKE--L--NGVRMIGI--CGMGGIGKTTLARVVYDLIAHE-----FEG-SSFLANVREIS 255 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~~ 255 (1214)
.+..|+||+.+++++...+ ... . ...+.+.| +|++|+||||||+++++..... +.. .+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4578999999999999998 521 2 23456667 9999999999999999877553 232 23433 22
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC--CCcEEEEEeCCCCHH--------HHHHHhcccCCC---C
Q 000943 256 EKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK--------QLESLAGEREWF---G 322 (1214)
Q Consensus 256 ~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~--------~l~~l~~~~~~~---~ 322 (1214)
.......+..+++..+.........+.......+.+.+. +++++|||||++... .+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 335666777888777422111111122334455555554 689999999998643 333333322111 2
Q ss_pred --CCcEEEEEeCCcchhhhc---------CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhC-----
Q 000943 323 --PGSRIIITSRDEHLLTTY---------GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSG----- 386 (1214)
Q Consensus 323 --~gs~IIiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~----- 386 (1214)
....||+|||...+...+ .....+++++|+.+++.++|...+.....+..-..+.+..+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 345588888765432111 1122399999999999999976642111111111356778999999
Q ss_pred -CChHHHHHHHhhh------CCC---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCC----CCC
Q 000943 387 -GLPLALSVLGSFL------CGK---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHR----GKS 452 (1214)
Q Consensus 387 -GlPLAl~~lg~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~ 452 (1214)
|+|..+..++... .+. +.+.+..++..... ...+..+++.||+.++.++..+|.+.. ...
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9997655444321 111 23334433332210 233455678999999999999997641 223
Q ss_pred HHHHH----HHH-hhCCCc------chhhhHHhhccCceEEe
Q 000943 453 RDYVT----KIL-DYCDFD------AVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 453 ~~~l~----~~~-~~~~~~------~~~~l~~L~~~sLi~~~ 483 (1214)
...+. .+. ...+.. ....++.|++.+||...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 33222 122 222322 23568899999999875
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=4.1e-14 Score=172.73 Aligned_cols=182 Identities=18% Similarity=0.206 Sum_probs=124.7
Q ss_pred cccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCC
Q 000943 606 NFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDC 685 (1214)
Q Consensus 606 ~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c 685 (1214)
+|+.|++++|++..+|..+ +++|++|+|++|... .+| ..+++|++|+|++| .+..+|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 3344444444444444333 245666666665433 444 44566666666664 4445665 443 7777777774
Q ss_pred CCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCccc
Q 000943 686 TDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTI 765 (1214)
Q Consensus 686 ~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 765 (1214)
.++.+|. .+++|+.|+|++|. +..+|. .+++|++|+|++|.+..+|. +. ++|+.|+|++|.. ..+|. +
T Consensus 131 -~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~-~ 198 (571)
T 3cvr_A 131 -QLTMLPE--LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA-V 198 (571)
T ss_dssp -CCSCCCC--CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC-C
T ss_pred -cCCCCCC--cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh-H
Confidence 4555776 67888999998875 455776 57899999999999999998 66 9999999999855 47887 5
Q ss_pred CCCCCC-------CEEEecCCCCCCccC-----CCCccccccCCccccCC-cccccccC
Q 000943 766 NDLTSL-------ITLNLSGCSKSKNVG-----VESLEGLGSSRTVLRNP-ESSIFSMQ 811 (1214)
Q Consensus 766 ~~L~sL-------~~L~ls~c~~l~~~p-----l~~L~~L~l~~~~l~~~-~~~~~~l~ 811 (1214)
.. +| +.|++++|... .+| +++|+.|++++|.++.. |..+..+.
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 77 99999999765 355 78999999999999764 66555443
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=9.6e-14 Score=152.68 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=124.2
Q ss_pred cCeeeecccCccCCCCccCCCCCceEEEecCCCCCCCCCC-C-Ccccccccccccccccccccc-cccccCccEEecCCC
Q 000943 562 TNLRMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSN-F-QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNA 638 (1214)
Q Consensus 562 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~ 638 (1214)
...+.++++++.+...+..++..++.|+++++.+..++.. | .+.+|++|+|++|.+..++.. +..+++|++|+|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3567788888888777777888999999999999998874 4 789999999999999987654 789999999999999
Q ss_pred cCCCCCCC-CCCCCCccEEeccCccCCCccCcc-ccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCcc
Q 000943 639 KNLISTPD-LTGLPNLEELDLRGCTRLRDIHPS-LLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPE 716 (1214)
Q Consensus 639 ~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~ 716 (1214)
......+. |..+++|++|+|++| .+..+|.. +..+++|++|+|++| .++.+|. .
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----------------------~ 149 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA----------------------G 149 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----------------------T
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH----------------------H
Confidence 87655544 678889999999885 45566554 456777777777664 3444443 2
Q ss_pred ccCCCCcceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCC
Q 000943 717 VVGSMECLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTH 757 (1214)
Q Consensus 717 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~ 757 (1214)
.++.+++|++|+|++|.+..+|. .+..+++|+.|+|++|+.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 34455555555555555555544 355556666666666543
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.7e-15 Score=176.35 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCCEEecCCCCCCCCC---cccccCCCCCCcEEeCCCCCCe--------ecCcccCCCCCCCEEeecCC
Q 000943 851 SLTKLDLSDCNLGEGA---IPSDIGNLCSLKELCLSKNKFI--------LLPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 851 ~L~~L~Ls~~~l~~~~---lp~~l~~l~sL~~L~L~~n~l~--------~lp~~i~~l~~L~~L~L~~C 908 (1214)
+|+.|+|++|.+.+.. +...+..+++|+.|+|++|.+. .++..+..+++|+.|+++++
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 5555666665554311 1233445556666666666522 23334445555555555554
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=9.1e-14 Score=156.38 Aligned_cols=166 Identities=23% Similarity=0.222 Sum_probs=87.7
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~ 684 (1214)
.+|+.|++++|.+..++ ++..+++|+.|+|++|..... +.+.++++|++|+|++|. +..++ .+..+++|++|+|++
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCC-cccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECCC
Confidence 33344444444444332 244455555555555543322 225555555555555532 33332 255555555555555
Q ss_pred CCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcc
Q 000943 685 CTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPST 764 (1214)
Q Consensus 685 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 764 (1214)
| .++.++....+++|+.|++++|.. ..+ ..++.+++|++|++++|.+..++. +..+++|+.|++++|.. ..+|.
T Consensus 122 n-~i~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-~~l~~- 195 (291)
T 1h6t_A 122 N-GISDINGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLRA- 195 (291)
T ss_dssp S-CCCCCGGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCGG-
T ss_pred C-cCCCChhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-CCChh-
Confidence 3 344444333555666666665432 223 345666667777777776666655 66667777777766643 33443
Q ss_pred cCCCCCCCEEEecCCC
Q 000943 765 INDLTSLITLNLSGCS 780 (1214)
Q Consensus 765 l~~L~sL~~L~ls~c~ 780 (1214)
+..+++|+.|++++|.
T Consensus 196 l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEECcCCc
Confidence 6666777777776664
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=4.7e-14 Score=149.00 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=70.3
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~ 684 (1214)
.+|+.|++++|.+..+| ++..+++|++|++++| ....++.+..+++|++|++++|......+..+..+++|++|+|++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 34444444445454444 4555556666666655 333444555556666666665443333444555555555555555
Q ss_pred CCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCcc-CcccCcccCCCCCCcEEecCCCCCCCcCCc
Q 000943 685 CTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTA-IEELPSSIQLLNGLILLNLEKCTHLVGLPS 763 (1214)
Q Consensus 685 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 763 (1214)
|. .....|..++.+++|++|++++|. +..+| .+..+++|+.|++++|... .++
T Consensus 122 n~-----------------------i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~- 175 (197)
T 4ezg_A 122 SA-----------------------HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR- 175 (197)
T ss_dssp SB-----------------------CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-
T ss_pred Cc-----------------------cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-
Confidence 43 222233334444444444444443 44443 3444444444444444322 222
Q ss_pred ccCCCCCCCEEEecCCC
Q 000943 764 TINDLTSLITLNLSGCS 780 (1214)
Q Consensus 764 ~l~~L~sL~~L~ls~c~ 780 (1214)
.+..+++|++|++++|.
T Consensus 176 ~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TGGGCSSCCEEEECBC-
T ss_pred HhccCCCCCEEEeeCcc
Confidence 34455555555555554
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=8.5e-14 Score=171.86 Aligned_cols=168 Identities=23% Similarity=0.220 Sum_probs=89.4
Q ss_pred cccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecC
Q 000943 604 PENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLK 683 (1214)
Q Consensus 604 ~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~ 683 (1214)
+.+|+.|++++|.+..++ .+..|++|+.|+|++|.... ++.+..+++|+.|+|++| .+..+| .+..+++|+.|+|+
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEec
Confidence 344444555555554443 34555555555555554322 223555555555555554 233333 45555555555555
Q ss_pred CCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCc
Q 000943 684 DCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPS 763 (1214)
Q Consensus 684 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 763 (1214)
+| .+..+|....+++|+.|+|++|.. ..+ ..++.+++|+.|+|++|.+..+++ +..+++|+.|+|++|... .+|
T Consensus 118 ~N-~l~~l~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~-~l~- 191 (605)
T 1m9s_A 118 HN-GISDINGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR- 191 (605)
T ss_dssp TS-CCCCCGGGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG-
T ss_pred CC-CCCCCccccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC-CCh-
Confidence 53 233444433555666666665532 223 345566666666666666666555 666666666666666433 233
Q ss_pred ccCCCCCCCEEEecCCCC
Q 000943 764 TINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 764 ~l~~L~sL~~L~ls~c~~ 781 (1214)
.+..|++|+.|+|++|..
T Consensus 192 ~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GGTTCTTCSEEECCSEEE
T ss_pred HHccCCCCCEEEccCCcC
Confidence 356666666666666543
No 116
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=8.3e-12 Score=146.46 Aligned_cols=277 Identities=14% Similarity=0.091 Sum_probs=173.9
Q ss_pred ccCcccchhhHHHHHHHHhh--hcCCcEEEEEEecCCchHHHHHHHHHHHHhcc------c-CccEEEEeehhhhccC-C
Q 000943 190 FKDLVGIDSRWKKLRFLIDK--ELNGVRMIGICGMGGIGKTTLARVVYDLIAHE------F-EGSSFLANVREISEKG-G 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F-~~~~~~~~~~~~~~~~-~ 259 (1214)
++.++||+.+++++...+.. .....+.+.|+|++|+|||++|+++++.+... + ...+...+. .... .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC---REVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH---HHHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC---ccCCCC
Confidence 47899999999999988864 23446789999999999999999999877443 2 222222222 2223 5
Q ss_pred HHHHHHHHHHhhhcCCCCC-cccccchHHHHHHHhCCCcEEEEEeCCCCHHH-------HHHHhcccCCCCCCcEEEEEe
Q 000943 260 LISLQKQLLSQLLKLPDSG-IWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQ-------LESLAGEREWFGPGSRIIITS 331 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~~~gs~IIiTT 331 (1214)
...+..+++..+.+..... ..........+.+.+..++.+|||||++.... +..+... . .+..||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 5667777777754332211 12233446667777777666999999986542 3333332 2 678899999
Q ss_pred CCcchhhhc------CccceeecCCCCHHHHHHHHHHhhhc---CCCCchHHHHHHHHHHHHhC---CChH-HHHHHHhh
Q 000943 332 RDEHLLTTY------GVDEVLKLKELHDDEALQLFCKKAFK---THQPWKEYEQLSKYVVKYSG---GLPL-ALSVLGSF 398 (1214)
Q Consensus 332 R~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~lg~~ 398 (1214)
+.......+ .....+++++++.++..+++...+.. ..... .+..+.++++++ |.|. |+..+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 875321111 11238999999999999999988532 12222 234566777777 8886 44333322
Q ss_pred h--C----CCChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCCCCH-HHHHHHHhhCCCc-----
Q 000943 399 L--C----GKTTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRGKSR-DYVTKILDYCDFD----- 466 (1214)
Q Consensus 399 L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~-~~l~~~~~~~~~~----- 466 (1214)
. . .-+.+.+..++.... ...+..+++.|++.++.++..++....+.+. +....+....|..
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 2 1 125677777776543 2456677899999999988888861110111 1223333332221
Q ss_pred -chhhhHHhhccCceEEe
Q 000943 467 -AVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 467 -~~~~l~~L~~~sLi~~~ 483 (1214)
....++.|.++++|+..
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 24557889999999875
No 117
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.7e-13 Score=152.51 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=134.0
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
+|+.|+++++.++.+|..-.+.+|++|++++|.+..++. +..+++|++|+|++|.. ..++.+..+++|++|+|++| .
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTS-C
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCC-c
Confidence 477777777777777764477888888888888888776 88899999999998864 44667888999999999986 4
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCC
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQL 743 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 743 (1214)
+..+ +.+..+++|++|++++| .++.++....+++|+.|++++|. +..++. +..+++|++|++++|.+..+|. +..
T Consensus 124 i~~~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~ 198 (291)
T 1h6t_A 124 ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAG 198 (291)
T ss_dssp CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTT
T ss_pred CCCC-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-hcc
Confidence 5555 46888899999999985 56666554588999999999875 444554 8889999999999999998874 888
Q ss_pred CCCCcEEecCCCCCC
Q 000943 744 LNGLILLNLEKCTHL 758 (1214)
Q Consensus 744 l~~L~~L~L~~c~~l 758 (1214)
+++|+.|++++|+..
T Consensus 199 l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 199 LKNLDVLELFSQECL 213 (291)
T ss_dssp CTTCSEEEEEEEEEE
T ss_pred CCCCCEEECcCCccc
Confidence 999999999987543
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.9e-13 Score=167.04 Aligned_cols=168 Identities=20% Similarity=0.194 Sum_probs=139.1
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
+|+.|+++++.+..+|....+.+|+.|+|++|.+..++. +..|++|+.|+|++|.. ..+|.+..+++|++|+|++|.
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~- 120 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG- 120 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-
Confidence 477777888888888764578899999999999988876 88999999999999964 557789999999999999964
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCC
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQL 743 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 743 (1214)
+..+ +.+..+++|+.|+|++| .+..++....+++|+.|+|++|.... ++. +..+++|+.|+|++|.+..+| .+..
T Consensus 121 l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~ 195 (605)
T 1m9s_A 121 ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLR-ALAG 195 (605)
T ss_dssp CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred CCCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCCCh-HHcc
Confidence 5555 46889999999999986 56666555589999999999986544 444 899999999999999999985 6889
Q ss_pred CCCCcEEecCCCCCCC
Q 000943 744 LNGLILLNLEKCTHLV 759 (1214)
Q Consensus 744 l~~L~~L~L~~c~~l~ 759 (1214)
+++|+.|+|++|....
T Consensus 196 l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 196 LKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCSEEECCSEEEEC
T ss_pred CCCCCEEEccCCcCcC
Confidence 9999999999986544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3e-15 Score=183.74 Aligned_cols=204 Identities=17% Similarity=0.103 Sum_probs=127.3
Q ss_pred CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCC-------------CCCccCccc-cccccccee-cccccCC
Q 000943 647 LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCT-------------DLTTLPNKI-AMIHLRKLV-LSGCSKL 711 (1214)
Q Consensus 647 ~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-Ls~c~~l 711 (1214)
+..+++|+.|+|++| .+..+|.+++++++|+.|++++|. .....|..+ .+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH--
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc--
Confidence 345667777777774 466778888888888888776543 222233333 455555555 33221
Q ss_pred CCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCcc
Q 000943 712 KKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLE 791 (1214)
Q Consensus 712 ~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~ 791 (1214)
+..|+.+.+.+|.+..+|. ..|+.|+|++|.. ..+|. ++.+++|+.|++++|.
T Consensus 422 ---------~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~----------- 474 (567)
T 1dce_A 422 ---------LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNR----------- 474 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSC-----------
T ss_pred ---------cchhhhhhhhcccccccCc-----cCceEEEecCCCC-CCCcC-ccccccCcEeecCccc-----------
Confidence 1223333344444544443 2477777777643 34665 6667777776666553
Q ss_pred ccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCccccc
Q 000943 792 GLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPSDI 871 (1214)
Q Consensus 792 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~~l 871 (1214)
++.+|..+..+++|+.|++++|.+.+ +|.+..+++|+.|+|++|++.....|..+
T Consensus 475 --------l~~lp~~~~~l~~L~~L~Ls~N~l~~-----------------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 475 --------LRALPPALAALRCLEVLQASDNALEN-----------------VDGVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp --------CCCCCGGGGGCTTCCEEECCSSCCCC-----------------CGGGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred --------ccccchhhhcCCCCCEEECCCCCCCC-----------------CcccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 33345566677777777777665542 34567788888888888888541118888
Q ss_pred CCCCCCcEEeCCCCCCeecCcccC----CCCCCCEEee
Q 000943 872 GNLCSLKELCLSKNKFILLPESIS----CLSKLWIIDL 905 (1214)
Q Consensus 872 ~~l~sL~~L~L~~n~l~~lp~~i~----~l~~L~~L~L 905 (1214)
+.+++|+.|+|++|.++.+|+.+. .+++|+.|++
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888999999999998887775443 3777777754
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=3.1e-13 Score=149.61 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=138.7
Q ss_pred CcccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 603 QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
.+.+++.+++.++.+..++ .+..+++|+.|++++|. +..++.+..+++|++|+|++| .+..+++ +..+++|++|+|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 5677888899999998887 68889999999999985 456678899999999999986 5677776 889999999999
Q ss_pred CCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCC
Q 000943 683 KDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLP 762 (1214)
Q Consensus 683 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 762 (1214)
++| .++.+|.... ++|++|+|++|. +..++ .++.+++|+.|++++|.+..+| .+..+++|+.|++++|.....
T Consensus 93 ~~N-~l~~l~~~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSS-CCSCCTTCCC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCC-ccCCcCcccc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence 985 5677776556 899999999975 44454 5888999999999999999886 688899999999999866544
Q ss_pred cccCCCCCCCEEEecCCCC
Q 000943 763 STINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 763 ~~l~~L~sL~~L~ls~c~~ 781 (1214)
..+..+++|+.|++++|..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCcc
Confidence 5678888888888887754
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=5.1e-15 Score=172.39 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=35.9
Q ss_pred CccccccCCccccCCc-----ccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC-CcCCCCCCCEEecCCCCC
Q 000943 789 SLEGLGSSRTVLRNPE-----SSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP-SLLGLCSLTKLDLSDCNL 862 (1214)
Q Consensus 789 ~L~~L~l~~~~l~~~~-----~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp-~~~~l~~L~~L~Ls~~~l 862 (1214)
+|+.|++++|.+...+ ..+..+++|+.|++++|.+....+. ....++ .+..+++|+.|+|++|++
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~---------~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE---------QCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH---------HHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH---------HHHHHHHHhccCCceEEEecCCCcC
Confidence 4444444444444332 2335567777777777763321110 000111 255677888888888888
Q ss_pred CC
Q 000943 863 GE 864 (1214)
Q Consensus 863 ~~ 864 (1214)
..
T Consensus 297 ~~ 298 (362)
T 3goz_A 297 HP 298 (362)
T ss_dssp CG
T ss_pred CC
Confidence 65
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=5.9e-12 Score=147.64 Aligned_cols=284 Identities=13% Similarity=0.083 Sum_probs=167.2
Q ss_pred cccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhcccC--c-cEEEEeehhhhccCCHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE--G-SSFLANVREISEKGGLISL 263 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~~~~~~~~l 263 (1214)
.++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+++++.+...+. . .+++. . ........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCCCCHHHH
Confidence 4578999999999999988742 345678999999999999999999998766542 2 23333 2 222344555
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhC--CCcEEEEEeCCCCHH------HHHHHhcccCC-CCCCcEEEEEeCCc
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDLK------QLESLAGEREW-FGPGSRIIITSRDE 334 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~~~-~~~gs~IIiTTR~~ 334 (1214)
...++..+.........+.......+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5555554311111111122333444555554 458999999997543 23344322211 13466778888876
Q ss_pred chhhhcC-------ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhC---CChHHH-HHHHhhhC---
Q 000943 335 HLLTTYG-------VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSG---GLPLAL-SVLGSFLC--- 400 (1214)
Q Consensus 335 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPLAl-~~lg~~L~--- 400 (1214)
.....+. ....+++++++.++..+++...+........-..+..+.++++++ |.|..+ .++.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4332221 114899999999999999988653211111112345566777777 999843 33322211
Q ss_pred --C---CChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCC-CC---CHHHH----HHHHhhCCCc-
Q 000943 401 --G---KTTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHR-GK---SRDYV----TKILDYCDFD- 466 (1214)
Q Consensus 401 --~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~---~~~~l----~~~~~~~~~~- 466 (1214)
+ -+.+.+..++.... ...+...+.++++.++.++..++.+.+ +. ....+ ..+....|..
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 1 14555665555432 245667788999999999988886432 21 12222 2222221211
Q ss_pred -----chhhhHHhhccCceEEe
Q 000943 467 -----AVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 467 -----~~~~l~~L~~~sLi~~~ 483 (1214)
....++.|.+.++|+..
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 24568889999999874
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.2e-12 Score=139.34 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=79.9
Q ss_pred EEEecCCCCCCCCCCCCcccccccccccccccccccc-cccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCC
Q 000943 587 FLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 587 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l 664 (1214)
.++..++.+..+|..+ +.+|++|++++|.+..++.. +..+++|++|+|++|+.....+. |.++++|++|+|++| .+
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 3444455555555443 33555555555555555433 45556666666666544333222 455566666666654 23
Q ss_pred CccCcc-ccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCccc
Q 000943 665 RDIHPS-LLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSI 741 (1214)
Q Consensus 665 ~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 741 (1214)
..++.. +..+++|++|+|++| .++.+|.. + .+++|++|+|++|......+..+..+++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 344332 345555555555553 23333332 1 3444444444443322222222444444444444444322
Q ss_pred CCCCCCcEEecCCCCCCCcCCcccCCC
Q 000943 742 QLLNGLILLNLEKCTHLVGLPSTINDL 768 (1214)
Q Consensus 742 ~~l~~L~~L~L~~c~~l~~lp~~l~~L 768 (1214)
+.+++|+.|+++.|.....+|..++.+
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 223344444444444444444444433
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.9e-12 Score=137.87 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=133.7
Q ss_pred ecccCccCCCCccCCCCCceEEEecCCCCCCCCCCC--Ccccccccccccccccccccc-cccccCccEEecCCCcCCCC
Q 000943 567 LTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLIS 643 (1214)
Q Consensus 567 L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~ 643 (1214)
++..++.+......++.+|++|+++++.++.+|... .+.+|++|++++|.+..++.. +..+++|++|+|++|.....
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 444444444444555678999999999999888753 789999999999999988765 68899999999999976654
Q ss_pred CCC-CCCCCCccEEeccCccCCCccCcc-ccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccC
Q 000943 644 TPD-LTGLPNLEELDLRGCTRLRDIHPS-LLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVG 719 (1214)
Q Consensus 644 ~p~-~~~l~~L~~L~L~~c~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~ 719 (1214)
.+. |.++++|++|+|++| .+..++.. +..+++|++|+|++| .++.+|.. + .+++|++|++++|.. .+
T Consensus 92 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~ 162 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW-------DC 162 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB-------CC
T ss_pred CHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe-------ec
Confidence 444 788999999999986 45666654 678999999999996 56667664 3 689999999999853 35
Q ss_pred CCCcceEEEeeCccCc-ccCcccCCCCC
Q 000943 720 SMECLLELFLDGTAIE-ELPSSIQLLNG 746 (1214)
Q Consensus 720 ~l~~L~~L~L~~~~i~-~lp~~i~~l~~ 746 (1214)
.+++|+.|++..|.+. .+|.+++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 5677899999988888 78888877665
No 125
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.1e-12 Score=138.44 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=111.9
Q ss_pred CceEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCC-CCCCCCCCCCccEEeccCcc
Q 000943 584 ELRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLI-STPDLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 584 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~-~~p~~~~l~~L~~L~L~~c~ 662 (1214)
+|++|+++++.+..+|....+.+|++|++++|.+..++ .+..+++|++|++++|.... .++.++++++|++|+|++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 47777777788888884337888999999999777665 68889999999999997665 35679999999999999987
Q ss_pred CCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCc
Q 000943 663 RLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE 735 (1214)
Q Consensus 663 ~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~ 735 (1214)
.....+..+..+++|++|+|++|..++.+|....+++|++|++++|. +..++ .+..+++|++|++++|.+.
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccC
Confidence 66567778889999999999998767777754467777777777764 33344 4566666666666666653
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=4.7e-13 Score=148.11 Aligned_cols=167 Identities=23% Similarity=0.213 Sum_probs=121.0
Q ss_pred ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEE
Q 000943 696 AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLN 775 (1214)
Q Consensus 696 ~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ 775 (1214)
.+.++..++++++. +..++ .+..+++|+.|++++|.+..+| .+..+++|+.|+|++|.. ..+|. +..+++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEE
Confidence 56778888888754 45555 5677888999999999999888 688899999999998754 44454 78888888888
Q ss_pred ecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEE
Q 000943 776 LSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKL 855 (1214)
Q Consensus 776 ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L 855 (1214)
+++|.... ++.. .. ++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 92 L~~N~l~~-------------------l~~~-~~-~~L~~L~L~~N~l~~-----------------~~~l~~l~~L~~L 133 (263)
T 1xeu_A 92 VNRNRLKN-------------------LNGI-PS-ACLSRLFLDNNELRD-----------------TDSLIHLKNLEIL 133 (263)
T ss_dssp CCSSCCSC-------------------CTTC-CC-SSCCEEECCSSCCSB-----------------SGGGTTCTTCCEE
T ss_pred CCCCccCC-------------------cCcc-cc-CcccEEEccCCccCC-----------------ChhhcCcccccEE
Confidence 88775432 2211 11 667777777765542 2346677788888
Q ss_pred ecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 856 DLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 856 ~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
+|++|++.. ++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|+
T Consensus 134 ~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 134 SIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 888888754 44 577788888888888887776 567777888888887764
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=3.6e-11 Score=140.98 Aligned_cols=284 Identities=11% Similarity=0.048 Sum_probs=169.6
Q ss_pred cccCcccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHhccc-----Cc-cEEEEeehhhhccCCH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIAHEF-----EG-SSFLANVREISEKGGL 260 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~~~~~~~ 260 (1214)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++...... .. .+++. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 3478999999999999988643 34567899999999999999999998774432 22 23332 2333455
Q ss_pred HHHHHHHHHhhhcCCCCCcccccchHHHHHHHh--CCCcEEEEEeCCCCHHH-------HHHHhcccCCC--CCCcEEEE
Q 000943 261 ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL--RYRRVLLIIDDAFDLKQ-------LESLAGEREWF--GPGSRIII 329 (1214)
Q Consensus 261 ~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gs~IIi 329 (1214)
..+...++..+.................+.+.+ .+++.+||||+++.... +..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 667777777752211111112333345555555 34689999999996532 22222222111 34667888
Q ss_pred EeCCcchhhhc------Cc-cceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhC---CChH-HHHHHHhh
Q 000943 330 TSRDEHLLTTY------GV-DEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSG---GLPL-ALSVLGSF 398 (1214)
Q Consensus 330 TTR~~~v~~~~------~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~lg~~ 398 (1214)
||+.......+ .. ...+.+++++.++..+++...+........-..+..+.++++++ |.|- |+.++...
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88775321111 11 14789999999999999988753210010111234566778887 9993 33333222
Q ss_pred hC-----C---CChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCCCC---HHH----HHHHHhhC
Q 000943 399 LC-----G---KTTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRGKS---RDY----VTKILDYC 463 (1214)
Q Consensus 399 L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~---~~~----l~~~~~~~ 463 (1214)
.. + -+.+.+..++.... ...+..++.+|++.++..+..++....+.. ... ...+....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 21 2 14566666665542 234666789999999999988885543322 221 22222222
Q ss_pred CCc------chhhhHHhhccCceEEe
Q 000943 464 DFD------AVIGIRVLIDKSLIEIS 483 (1214)
Q Consensus 464 ~~~------~~~~l~~L~~~sLi~~~ 483 (1214)
+.. ....++.|...|+++..
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 222 23557889999999874
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.4e-14 Score=177.82 Aligned_cols=174 Identities=22% Similarity=0.281 Sum_probs=99.9
Q ss_pred CcccccccccccccccccccccccccCccEEecCCCcC-------------CCCCC-CCCCCCCccEEe-ccCccCCCcc
Q 000943 603 QPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKN-------------LISTP-DLTGLPNLEELD-LRGCTRLRDI 667 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~-------------l~~~p-~~~~l~~L~~L~-L~~c~~l~~l 667 (1214)
..++|+.|+|++|.++.+|..+++|++|+.|++++|.. ...+| .++.+++|+.|+ ++. ..+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchh
Confidence 46788899999999999999999999999999977642 11112 144455555555 222 111111
Q ss_pred Cc------cccC--CCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc
Q 000943 668 HP------SLLL--HKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS 739 (1214)
Q Consensus 668 p~------si~~--l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 739 (1214)
+. .+.. ...|+.|+|++| .++.+|....+++|+.|+|++|. +..+|..++++++|+.|+|++|.++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 10 0000 123556666653 44555552355566666666543 3355555666666666666666666655
Q ss_pred ccCCCCCCcEEecCCCCCCCcC-CcccCCCCCCCEEEecCCC
Q 000943 740 SIQLLNGLILLNLEKCTHLVGL-PSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 740 ~i~~l~~L~~L~L~~c~~l~~l-p~~l~~L~sL~~L~ls~c~ 780 (1214)
.++.+++|+.|+|++|...... |..++.+++|+.|++++|.
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 5556666666666655444333 5555555555555555544
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=6e-12 Score=135.18 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=54.5
Q ss_pred CccEEecCCCcCCCCCC-CCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc--ccccccceec
Q 000943 629 NLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVL 705 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L 705 (1214)
+|+.|+|++|......+ .|.++++|++|+|++|......|..+..+++|++|+|++| .++.+|... .+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEEC
Confidence 44444444444333222 2444555555555553322222344555555555555552 333344322 3444444444
Q ss_pred ccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCC
Q 000943 706 SGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEK 754 (1214)
Q Consensus 706 s~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 754 (1214)
++|......|..+..+++|++|+|++|.+..++.. +..+++|+.|+|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 44433333344444555555555555555544432 33334444444433
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=5e-11 Score=139.95 Aligned_cols=306 Identities=14% Similarity=0.105 Sum_probs=178.7
Q ss_pred cccCcccchhhHHHHHHHHhhh--cC--CcEEEEEEecCCchHHHHHHHHHHHHhccc-CccEEEEeehhhhccCCHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE--LN--GVRMIGICGMGGIGKTTLARVVYDLIAHEF-EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~--~~--~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.++.++||+.+++++...+... .. ..+.+.|+|++|+||||+|+++++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988742 12 234899999999999999999998876542 2233333 2333445666
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhC--CCcEEEEEeCCCCH--HHHHHHhcccCCCC----CCcEEEEEeCCcc
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR--YRRVLLIIDDAFDL--KQLESLAGEREWFG----PGSRIIITSRDEH 335 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~l~~l~~~~~~~~----~gs~IIiTTR~~~ 335 (1214)
...++..+.................+.+.+. +++.+||||+++.. +.+..+........ .+..||++|++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 7777766422111111122333444444443 57899999999864 44555544332211 4678888888764
Q ss_pred hhhhcC-------ccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHh---------CCChHHHHHHHhh-
Q 000943 336 LLTTYG-------VDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYS---------GGLPLALSVLGSF- 398 (1214)
Q Consensus 336 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLAl~~lg~~- 398 (1214)
...... ....+.+++++.++..+++...+........-..+..+.+++++ +|.|..+..+...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 332221 11369999999999999998876431111111235677888888 7887554333222
Q ss_pred hC-----CC---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccC---CC--CCHHHHHHH----Hh
Q 000943 399 LC-----GK---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFH---RG--KSRDYVTKI----LD 461 (1214)
Q Consensus 399 L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~---~~--~~~~~l~~~----~~ 461 (1214)
.. +. +.+....+...... .. +...+..|+.+++.++..++.+. .+ .....+... ..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~---~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF---GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC---CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh---hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 21 33444444433321 11 22335778899998888888654 22 233333222 22
Q ss_pred hCCCc------chhhhHHhhccCceEEecC-------CeE-------EecHHHHHHHHHHHHhc
Q 000943 462 YCDFD------AVIGIRVLIDKSLIEISSG-------NRL-------WMHDLLQEMGQQIVKKQ 505 (1214)
Q Consensus 462 ~~~~~------~~~~l~~L~~~sLi~~~~~-------~~~-------~mHdLv~e~~~~i~~~e 505 (1214)
..+.. ....++.|.++++|..... +++ ..|++++.+...+..+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 22221 2355788999999988533 222 14677777766666553
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=7.5e-12 Score=134.46 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=82.3
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccccc--ccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCcc
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS--GIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCT 662 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~--~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~ 662 (1214)
+.++++++.++.+|..+ +..+++|+|++|.+..++. .+..+++|+.|+|++|......+ .|.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 35666666666666554 3445666666666665532 25566666666666665443333 35556666666666543
Q ss_pred CCCccCc-cccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCccc-Ccc
Q 000943 663 RLRDIHP-SLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEEL-PSS 740 (1214)
Q Consensus 663 ~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~ 740 (1214)
+..++. .+..+++|++|+|+ +|......|..+..+++|++|+|++|.+..+ |..
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls-----------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLR-----------------------SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECT-----------------------TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred -cCccCHhHhcCCcCCCEEECC-----------------------CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 233322 24444555555544 4443333345556666666666666666655 455
Q ss_pred cCCCCCCcEEecCCCCC
Q 000943 741 IQLLNGLILLNLEKCTH 757 (1214)
Q Consensus 741 i~~l~~L~~L~L~~c~~ 757 (1214)
+..+++|+.|+|++|..
T Consensus 149 ~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTTCTTCCEEECCSCCE
T ss_pred hcCCCCCCEEEecCcCC
Confidence 66666677777766643
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=3.3e-12 Score=148.42 Aligned_cols=170 Identities=19% Similarity=0.223 Sum_probs=85.5
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccccccccccccc-cc-cccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG-IK-PLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~-~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~ 663 (1214)
+.+++.++.++.+|..+ +..++.|+|++|.+..++.. +. .+++|+.|+|++|+.....+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~------------------ 81 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS------------------ 81 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT------------------
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh------------------
Confidence 35556666666666543 23345555555555544433 22 44444444444443332222
Q ss_pred CCccCccccCCCCCcEEecCCCCCCCccCcc-c-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCccc
Q 000943 664 LRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSI 741 (1214)
Q Consensus 664 l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 741 (1214)
..+..+++|++|+|++| .++.+|.. + .+++|++|+|++|......|..+..+++|+.|+|++|.+..+|..+
T Consensus 82 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 82 -----EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred -----hhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 23444455555555443 23333332 1 4455555555555444344556667777777777777777776654
Q ss_pred ----CCCCCCcEEecCCCCCCCcCCcccCCCCC--CCEEEecCCC
Q 000943 742 ----QLLNGLILLNLEKCTHLVGLPSTINDLTS--LITLNLSGCS 780 (1214)
Q Consensus 742 ----~~l~~L~~L~L~~c~~l~~lp~~l~~L~s--L~~L~ls~c~ 780 (1214)
..+++|+.|+|++|......+..+..++. |+.|++++|+
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 45666777777665443222233444444 2445555543
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=1.7e-11 Score=132.63 Aligned_cols=150 Identities=25% Similarity=0.266 Sum_probs=93.0
Q ss_pred ccccccccccccccccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCCCccCcc-ccCCCCCcEEecCC
Q 000943 607 FFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRLRDIHPS-LLLHKNLVSVNLKD 684 (1214)
Q Consensus 607 L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~s-i~~l~~L~~L~L~~ 684 (1214)
...++.+++.+..+|.++. ++|++|+|++|......|. |.++++|++|+|++|. +..+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4456667777777776554 6677777777665544333 5666666666666643 4444432 34455555555554
Q ss_pred CCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCcc
Q 000943 685 CTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPST 764 (1214)
Q Consensus 685 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 764 (1214)
| .++.+| +..+..+++|++|+|++|.+..+|..+..+++|+.|+|++|......+..
T Consensus 98 N-~l~~l~----------------------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 98 N-QLTVLP----------------------SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp S-CCCCCC----------------------TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred C-cCCccC----------------------hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 3 222222 33456677777777777777777777777777777777777554433455
Q ss_pred cCCCCCCCEEEecCCCCC
Q 000943 765 INDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 765 l~~L~sL~~L~ls~c~~l 782 (1214)
+..+++|+.|++++|...
T Consensus 155 ~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECTTSCBC
T ss_pred HhCCCCCCEEEeeCCCcc
Confidence 777788888888777653
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=8.9e-12 Score=133.86 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=104.8
Q ss_pred cccccccccccccccccccccCccEEecCCCcCCCCCCC--CCCCCCccEEeccCccCCCccCc-cccCCCCCcEEecCC
Q 000943 608 FELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPD--LTGLPNLEELDLRGCTRLRDIHP-SLLLHKNLVSVNLKD 684 (1214)
Q Consensus 608 ~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~--~~~l~~L~~L~L~~c~~l~~lp~-si~~l~~L~~L~L~~ 684 (1214)
+.++++++.++.+|..+. ..++.|+|++|......+. |.++++|++|+|++|. +..+++ .+.
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~------------ 78 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFE------------ 78 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTT------------
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhC------------
Confidence 456666777766665443 2345666666654433222 4555555555555532 333322 333
Q ss_pred CCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCccc-CcccCCCCCCcEEecCCCCCCCcCCc
Q 000943 685 CTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEEL-PSSIQLLNGLILLNLEKCTHLVGLPS 763 (1214)
Q Consensus 685 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~ 763 (1214)
.+++|++|+|++|......+..++.+++|++|+|++|.+..+ |..+..+++|+.|+|++|......|.
T Consensus 79 -----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 79 -----------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp -----------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred -----------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 455566666666554444556688999999999999999988 56789999999999999988777789
Q ss_pred ccCCCCCCCEEEecCCCCCCcc
Q 000943 764 TINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 764 ~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
.+..+++|+.|++++|......
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSG
T ss_pred HhcCCCCCCEEEecCcCCcCCC
Confidence 9999999999999999865433
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=5.7e-12 Score=146.41 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=125.9
Q ss_pred eeecccCccCCCCccCCCCCceEEEecCCCCCCCCCCC---Cccccccccccccccccccc-ccccccCccEEecCCCcC
Q 000943 565 RMLTIGNVQLPEGLEFLPNELRFLEWHGYPFKSLPSNF---QPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKN 640 (1214)
Q Consensus 565 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~---~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~ 640 (1214)
++++++++.+..-+..++..++.|++++|.++.+|... .+.+|+.|+|++|.+..++. .+..+++|+.|+|++|+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 57888888877777778888999999999999998753 78999999999999998875 589999999999999986
Q ss_pred CCCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecccccCCCCCccccC
Q 000943 641 LISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVG 719 (1214)
Q Consensus 641 l~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~ 719 (1214)
....+. |.++++|++|+|++|......|..+..+++|+.|+|++| .++.+|...- ..+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-------------------~~~~ 160 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELI-------------------KDGN 160 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGT-------------------C---
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHh-------------------cCcc
Confidence 555543 888999999999996544334567778888888888874 4555554320 0013
Q ss_pred CCCcceEEEeeCccCcccCc-ccCCCCC--CcEEecCCCC
Q 000943 720 SMECLLELFLDGTAIEELPS-SIQLLNG--LILLNLEKCT 756 (1214)
Q Consensus 720 ~l~~L~~L~L~~~~i~~lp~-~i~~l~~--L~~L~L~~c~ 756 (1214)
.+++|+.|+|++|.+..+|. .+..++. |+.|+|.+|+
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 45566666666666666653 3444554 3667777664
No 136
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.6e-11 Score=131.89 Aligned_cols=147 Identities=17% Similarity=0.258 Sum_probs=111.3
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccccc-ccccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccCccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~c~~ 663 (1214)
+.++.+++.++.+|..+ +.+|+.|++++|.+..++. .+..+++|+.|+|++|......| .|.++++|++|+|++| .
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 45677777777777765 3678888888888887765 57888888888888887665544 4888888888888885 5
Q ss_pred CCccCcc-ccCCCCCcEEecCCCCCCCcc-Cccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCc
Q 000943 664 LRDIHPS-LLLHKNLVSVNLKDCTDLTTL-PNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIE 735 (1214)
Q Consensus 664 l~~lp~s-i~~l~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~ 735 (1214)
+..+|.. +..+++|++|+|++|. ++.+ |..+ .+++|++|+|++|......+..+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6677665 4678888888888854 4444 4444 7888999999887655555566888999999999998875
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=2.4e-11 Score=131.32 Aligned_cols=146 Identities=20% Similarity=0.189 Sum_probs=84.7
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccc-ccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 663 (1214)
..++.+++.+..+|..+ +.+|++|+|++|.+..+ +..+..+++|+.|+|++|......+. |.++++|++|+|++| .
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-c
Confidence 34555666666666654 36677777777777766 44567778888888887765433333 677888888888875 4
Q ss_pred CCccCcc-ccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccC
Q 000943 664 LRDIHPS-LLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAI 734 (1214)
Q Consensus 664 l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i 734 (1214)
+..++.. +..+++|++|+|++| .++.+|..+ .+++|++|+|++|......+..+..+++|+.|++++|.+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 5555544 466777777777763 344555443 444444444444322211122344444444444444443
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=8e-13 Score=167.36 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=65.9
Q ss_pred CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcce
Q 000943 647 LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLL 725 (1214)
Q Consensus 647 ~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~ 725 (1214)
+..+++|+.|+|++|. +..+|..++.+++|++|+|++| .++.+|..+ .+++|++|+|++|. +..+|..+++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 5556666666666643 4456666666666666666664 344555544 55566666666554 235555566666666
Q ss_pred EEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCccc
Q 000943 726 ELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPSTI 765 (1214)
Q Consensus 726 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 765 (1214)
+|+|++|.+..+|..++.+++|+.|+|++|.....+|..+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 6666666666666556666666666666655554444443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=3.2e-12 Score=161.89 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=98.2
Q ss_pred ccccccccccccccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCC
Q 000943 605 ENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKD 684 (1214)
Q Consensus 605 ~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~ 684 (1214)
..+..|+|.++.+...+..+ |+.++|+.+. +..+++.. +.+...+..+..+++|+.|+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~-------------i~~~~~~~-n~~~~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYS-------------IDEDDDIE-NRMVMPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCccc-------------ccCccccc-cceecChhhhccCCCCcEEECCC
Confidence 45667777777776655443 3344444432 23334443 34555677888999999999999
Q ss_pred CCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCCc
Q 000943 685 CTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLPS 763 (1214)
Q Consensus 685 c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~ 763 (1214)
|. +..+|..+ .+++|++|+|++|.. ..+|..++++++|++|+|++|.|..+|..++.+++|++|+|++|.. ..+|.
T Consensus 234 n~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~ 310 (727)
T 4b8c_D 234 LQ-IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPW 310 (727)
T ss_dssp SC-CSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCS
T ss_pred CC-CCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccCh
Confidence 65 56888766 899999999999754 4899999999999999999999999999999999999999999854 68898
Q ss_pred ccCCCCCCCEEEecCCCCCCccC
Q 000943 764 TINDLTSLITLNLSGCSKSKNVG 786 (1214)
Q Consensus 764 ~l~~L~sL~~L~ls~c~~l~~~p 786 (1214)
.+++|++|+.|+|++|......|
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp STTSCTTCCCEECTTSCCCSHHH
T ss_pred hhhcCCCccEEeCCCCccCCCCh
Confidence 89999999999999988766554
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.7e-11 Score=125.66 Aligned_cols=126 Identities=24% Similarity=0.269 Sum_probs=62.6
Q ss_pred ccccccccccccc--ccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecC
Q 000943 606 NFFELNMCYSRME--RMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLK 683 (1214)
Q Consensus 606 ~L~~L~L~~~~l~--~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~ 683 (1214)
+|++|++++|.+. .+|..+..+++|+.|+|++|.... ++.+..+++|++|+|++|.....+|..+..++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------- 95 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLP-------- 95 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCT--------
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCC--------
Confidence 3344444444444 444444555555555555554322 24455555555555555432222333333344
Q ss_pred CCCCCCccCcccccccccceecccccCCCCCc--cccCCCCcceEEEeeCccCcccCc----ccCCCCCCcEEecCCCC
Q 000943 684 DCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFP--EVVGSMECLLELFLDGTAIEELPS----SIQLLNGLILLNLEKCT 756 (1214)
Q Consensus 684 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~c~ 756 (1214)
+|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .+..+++|+.|++++|.
T Consensus 96 ---------------~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 ---------------NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ---------------TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ---------------CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 44444444432 23333 445556666666666666666655 45566666666666653
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=2.9e-11 Score=123.83 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=28.1
Q ss_pred CcceEEEeeCccCc--ccCcccCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCC
Q 000943 722 ECLLELFLDGTAIE--ELPSSIQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 722 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
++|++|++++|.+. .+|..+..+++|+.|++++|... .+ ..+..+++|++|++++|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcC
Confidence 33444444444444 44444444555555555554422 22 3455555555555555543
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=8.4e-10 Score=119.99 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=119.0
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++||+..++.+...+..+. ..+.+.|+|++|+||||+|+++++.+...+.....- ...... ...+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVCDN-CREIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--------CSCSHH-HHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CcccHH-HHHHh
Confidence 34679999999999999987542 335789999999999999999998775433211000 000000 00000
Q ss_pred Hh----hhcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEEeCCcchh
Q 000943 269 SQ----LLKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIITSRDEHLL 337 (1214)
Q Consensus 269 ~~----ll~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 337 (1214)
.. +........ ........+.+.+ .+++.+||+||++. ...+..+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCG-GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCccc-ccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00 000000000 0000111111211 34689999999975 445566655444445678899999775322
Q ss_pred h-h-cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhh
Q 000943 338 T-T-YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSF 398 (1214)
Q Consensus 338 ~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~ 398 (1214)
. . ......+++++++.++..+++...+........ .+..+.++++++|+|..+..+...
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1 122358999999999999999988754332211 355778999999999988776543
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=4.6e-11 Score=119.67 Aligned_cols=60 Identities=23% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCCCCeecCc----ccCCCCCCCEEeecC
Q 000943 848 GLCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKNKFILLPE----SISCLSKLWIIDLEE 907 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~----~i~~l~~L~~L~L~~ 907 (1214)
.+++|+.|+|++|.+..-..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 356677777777776441223677788888888888888887775 577788888887753
No 144
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=5.4e-11 Score=119.13 Aligned_cols=124 Identities=24% Similarity=0.200 Sum_probs=69.9
Q ss_pred cccCccEEecCCCcCC-CCCCC-CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccc
Q 000943 626 PLSNLKIMRLCNAKNL-ISTPD-LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRK 702 (1214)
Q Consensus 626 ~L~~L~~L~Ls~~~~l-~~~p~-~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 702 (1214)
..++|+.|++++|... ..+|. +..+++|++|++++| .+..+ ..+..+++|++|+|++|.....+|..+ .+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467777777777655 23443 567777777777775 34444 556666677777776654333345444 3556666
Q ss_pred eecccccCCCCCc--cccCCCCcceEEEeeCccCcccCc----ccCCCCCCcEEec
Q 000943 703 LVLSGCSKLKKFP--EVVGSMECLLELFLDGTAIEELPS----SIQLLNGLILLNL 752 (1214)
Q Consensus 703 L~Ls~c~~l~~lp--~~~~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L 752 (1214)
|++++|. +..+| ..++.+++|++|++++|.+..+|. .+..+++|+.|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6666544 23222 445555555555555555555543 3444455555544
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=9.4e-10 Score=115.24 Aligned_cols=129 Identities=25% Similarity=0.292 Sum_probs=92.0
Q ss_pred cEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcc--c-ccccccceecccccCCCCCccccCCCCcceEEEee
Q 000943 654 EELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNK--I-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLD 730 (1214)
Q Consensus 654 ~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~ 730 (1214)
++|++++ ..+..+|..+.. +|++|+|++| .++.+|.. + .+++|++|+|++|......|..++.+++|++|+|+
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4555555 344555554432 6666666664 34445432 3 66777777777766555557788888889999999
Q ss_pred CccCcccCcc-cCCCCCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccC
Q 000943 731 GTAIEELPSS-IQLLNGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVG 786 (1214)
Q Consensus 731 ~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~p 786 (1214)
+|.+..++.. +..+++|++|+|++|......|..+..+++|++|++++|......+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9998877754 7888999999999988777778888899999999999887654443
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=3.7e-09 Score=113.18 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=115.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
....++|++..++++..++.... .+.+.|+|++|+|||++|+++++.+........++..- .....+...+. ..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~ 89 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVR-HKI 89 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHH-HHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHH-HHH
Confidence 34679999999999999987542 23489999999999999999998764433222232211 11112222211 111
Q ss_pred HhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcchh-hhc-Cccc
Q 000943 269 SQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHLL-TTY-GVDE 344 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~~~ 344 (1214)
........ ....++.+||+||++.. ...+.+...+.....+.++|+||+..... ..+ ....
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 01357899999999864 33444444443345678899998875321 111 2224
Q ss_pred eeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 345 VLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.+++.+++.++..+++...+....... ..+..+.+++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999999988775333221 1345677889999999865443
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=5.4e-10 Score=117.10 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=33.2
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccccccccccccc--cccccCccEEecCCCcCCCCCC-CCCCCCCccEEeccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSG--IKPLSNLKIMRLCNAKNLISTP-DLTGLPNLEELDLRG 660 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~L~~L~~L~Ls~~~~l~~~p-~~~~l~~L~~L~L~~ 660 (1214)
++++++++.++.+|..+. .+|++|++++|.+..++.. +..+++|++|+|++|......| .|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455566666655555431 2445555555544444432 4444444444444443333322 133344444444443
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=114.07 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=80.1
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccccccccccccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccCC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERMWSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTRL 664 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~l 664 (1214)
++++++++.++.+|..+ +.+|++|++++|.+..+|..+..+++|+.|+|++|......+. |.++++|++|+|++|. +
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-L 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-c
Confidence 46777777888888765 4678888888888888887788888888888888876555443 7788888888888754 4
Q ss_pred CccCc-cccCCCCCcEEecCCCCCCCccCcc-c-ccccccceeccc
Q 000943 665 RDIHP-SLLLHKNLVSVNLKDCTDLTTLPNK-I-AMIHLRKLVLSG 707 (1214)
Q Consensus 665 ~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~ 707 (1214)
..+++ .+..+++|++|+|++| .++.+|.. + .+++|+.|+|++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 44443 5666777777777763 34444432 1 344444444443
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=5.7e-10 Score=127.70 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=131.5
Q ss_pred CcCeeeecccCccCC--CCccCCCCCceEEEecCCCCCCCCCC-C-C--------cccccccccccccccccccc-cccc
Q 000943 561 MTNLRMLTIGNVQLP--EGLEFLPNELRFLEWHGYPFKSLPSN-F-Q--------PENFFELNMCYSRMERMWSG-IKPL 627 (1214)
Q Consensus 561 ~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~--------~~~L~~L~L~~~~l~~l~~~-~~~L 627 (1214)
+++|+.|++++|++. .+.......++++....+ .+|.. | . +.+|+.|+|+. .++.++.. |..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 677888888877765 222211112344444443 45543 3 4 57777777777 67766644 6777
Q ss_pred cCccEEecCCCcCCCCCCC-CCCCCCccEEeccCcc---CCCcc-CccccCCCCCc-EEecCCCCCCCccCccc-----c
Q 000943 628 SNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCT---RLRDI-HPSLLLHKNLV-SVNLKDCTDLTTLPNKI-----A 696 (1214)
Q Consensus 628 ~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~---~l~~l-p~si~~l~~L~-~L~L~~c~~l~~lp~~~-----~ 696 (1214)
.+|+.|+++++......+. |.++.++..+.+.... ....+ +..+..+..|+ .+.+.... .+|..+ .
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~ 200 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQ 200 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCC
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccC
Confidence 7777777777654433222 6666666655554311 11111 11233344444 33333322 222221 3
Q ss_pred cccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCCCCcCC-cccCCCCCCC-E
Q 000943 697 MIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTHLVGLP-STINDLTSLI-T 773 (1214)
Q Consensus 697 l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~sL~-~ 773 (1214)
..+++.+.+.+.-....+......+++|+.|+|.+|.++.+|.. +..+++|+.|+|.++ +..++ ..|.++++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 45566666655321111111122367899999999999988864 788889999999886 55555 4578888898 8
Q ss_pred EEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCC
Q 000943 774 LNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTL 823 (1214)
Q Consensus 774 L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 823 (1214)
|++.+ .+..++ +..|..|++|+.|++.++.+
T Consensus 279 l~l~~--~l~~I~-----------------~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 279 LELPA--SVTAIE-----------------FGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEECT--TCCEEC-----------------TTTTTTCTTEEEEEECSSCC
T ss_pred EEEcc--cceEEc-----------------hhhhhCCccCCEEEeCCCcc
Confidence 88876 222222 23455666666666655544
No 150
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=4.1e-10 Score=116.18 Aligned_cols=100 Identities=16% Similarity=0.301 Sum_probs=44.9
Q ss_pred CccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc--ccccccceecccccCCCCCcc--ccCCCCcceEE
Q 000943 652 NLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPE--VVGSMECLLEL 727 (1214)
Q Consensus 652 ~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~--~~~~l~~L~~L 727 (1214)
+|++|+|++| .+..+ ..+..+++|++|+|++| .++.+|..+ .+++|++|+|++|. +..+|. .++.+++|+.|
T Consensus 43 ~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 4444444443 22222 33444444444444442 233333221 34444444444432 233343 44555556666
Q ss_pred EeeCccCcccCcc----cCCCCCCcEEecCCC
Q 000943 728 FLDGTAIEELPSS----IQLLNGLILLNLEKC 755 (1214)
Q Consensus 728 ~L~~~~i~~lp~~----i~~l~~L~~L~L~~c 755 (1214)
++++|.+..+|.. +..+++|+.|+++.|
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666555543 445555555555444
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=2.8e-09 Score=111.72 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=60.6
Q ss_pred CCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCc-ccCCCCCCcEEecC
Q 000943 676 NLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPS-SIQLLNGLILLNLE 753 (1214)
Q Consensus 676 ~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~ 753 (1214)
+|++|+|++| .++.+|..+ .+++|++|+|++|......+..+.++++|++|+|++|.+..++. .+..+++|+.|+|+
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444442 333444333 44555555555544333334456666677777777777776654 46667777777777
Q ss_pred CCCCCCcCCcccCCCCCCCEEEecCCCC
Q 000943 754 KCTHLVGLPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 754 ~c~~l~~lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
+|......+..+..+++|+.|++++|..
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 7654433334566777777777777654
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=6.8e-10 Score=114.55 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=52.3
Q ss_pred CccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccc-cCCCCCcEEecCCCCCCCccCc--cc-cccccccee
Q 000943 629 NLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSL-LLHKNLVSVNLKDCTDLTTLPN--KI-AMIHLRKLV 704 (1214)
Q Consensus 629 ~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si-~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~ 704 (1214)
+|++|+|++|.... ++.+..+++|++|+|++| .+..+|+.+ ..+++|++|+|++| .++.+|. .+ .+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCE-ECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCc-ccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 44555555443322 244555555555555553 234444333 45555555555553 3344443 22 455566666
Q ss_pred cccccCCCCCccc----cCCCCcceEEEeeCccCcc
Q 000943 705 LSGCSKLKKFPEV----VGSMECLLELFLDGTAIEE 736 (1214)
Q Consensus 705 Ls~c~~l~~lp~~----~~~l~~L~~L~L~~~~i~~ 736 (1214)
+++|.. ..+|.. ++.+++|+.|++++|.+.+
T Consensus 120 l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 655443 334442 5666666666666666553
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=3.6e-10 Score=129.41 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=52.6
Q ss_pred CCccccccCCccccCCcc-cccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC--CcCCCCCCC-EEecCCCCCC
Q 000943 788 ESLEGLGSSRTVLRNPES-SIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP--SLLGLCSLT-KLDLSDCNLG 863 (1214)
Q Consensus 788 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp--~~~~l~~L~-~L~Ls~~~l~ 863 (1214)
.+|+.+++++|.++.++. .|..|.+|+.|++.++ +. .++ .|.++.+|+ .|+|.+ ++.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-----------------~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-----------------TIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-----------------EECTTTTTTCTTCCEEEEECT-TCC
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-----------------eehHHHhhCChhccEEEEEcc-cce
Confidence 456666666665655533 4556666666666554 11 111 155566666 666665 332
Q ss_pred CCCcc-cccCCCCCCcEEeCCCCCCeecCc-ccCCCCCCCEEe
Q 000943 864 EGAIP-SDIGNLCSLKELCLSKNKFILLPE-SISCLSKLWIID 904 (1214)
Q Consensus 864 ~~~lp-~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~ 904 (1214)
. ++ ..+.++++|+.|++++|+++.++. .+.++++|+.|+
T Consensus 287 ~--I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 287 A--IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp E--ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred E--EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 2 32 445566666666666666666553 455566666554
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=1.5e-08 Score=115.48 Aligned_cols=186 Identities=17% Similarity=0.247 Sum_probs=113.3
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
....++|++..++.+..++..+. .+.+.|+|++|+|||++|+++++.+... +...+...+. ....+... .+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRGIDV-VRNQ 92 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCSHHH-HHTH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccChHH-HHHH
Confidence 34679999999999999986532 2338899999999999999999876432 2222221111 11112111 1222
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcch-hhhc-Cc
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHL-LTTY-GV 342 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~~~~-~~ 342 (1214)
+..+.... ..+ .+++.++|+||++.. .....+...+....+++++|+||+...- .... ..
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22211000 011 346889999999863 3344444333333567888888876432 1111 22
Q ss_pred cceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHHHh
Q 000943 343 DEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVLGS 397 (1214)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg~ 397 (1214)
...+++.+++.++..+++...+....... ..+.+..+++.++|.|. |+..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35899999999999999988764332221 13456789999999995 4444433
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=1.4e-08 Score=104.56 Aligned_cols=88 Identities=24% Similarity=0.251 Sum_probs=53.2
Q ss_pred ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCCCCCcCCc-ccCCCCCCCE
Q 000943 696 AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCTHLVGLPS-TINDLTSLIT 773 (1214)
Q Consensus 696 ~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~sL~~ 773 (1214)
.+++|++|++++|......+..++.+++|++|++++|.+..+|.. +..+++|+.|++++|... .+|. .+..+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQK 128 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCE
Confidence 344555555555433222233456667777777777777766654 466777777777776544 3443 3566777888
Q ss_pred EEecCCCCCCc
Q 000943 774 LNLSGCSKSKN 784 (1214)
Q Consensus 774 L~ls~c~~l~~ 784 (1214)
|++++|.....
T Consensus 129 L~l~~N~~~~~ 139 (177)
T 2o6r_A 129 IWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCBCCC
T ss_pred EEecCCCeecc
Confidence 88777765443
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=3.8e-11 Score=126.62 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCccc-ccccccceecccccCCCCCccccCCCCcce
Q 000943 647 LTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKFPEVVGSMECLL 725 (1214)
Q Consensus 647 ~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~ 725 (1214)
++.+++|++|+|++| .+..+| .+..+++|++|++++| .++.+|..+ .+++|++|++++|. +..+| .++.+++|+
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCC
Confidence 334444555555443 233344 4445555555555553 334455444 34566666666653 33344 355566666
Q ss_pred EEEeeCccCcccCc--ccCCCCCCcEEecCCCCCCCcCCcc----------cCCCCCCCEEE
Q 000943 726 ELFLDGTAIEELPS--SIQLLNGLILLNLEKCTHLVGLPST----------INDLTSLITLN 775 (1214)
Q Consensus 726 ~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~----------l~~L~sL~~L~ 775 (1214)
+|++++|.+..+|. .+..+++|++|++++|......|.. +..+++|+.|+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 66666666665543 4566666666666666544333321 55666666665
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.83 E-value=1.9e-08 Score=103.59 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=16.9
Q ss_pred CCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCC
Q 000943 719 GSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCT 756 (1214)
Q Consensus 719 ~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 756 (1214)
..+++|++|++++|.+..+|.. +..+++|+.|+|++|.
T Consensus 97 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 3344444444444444444433 2344444455554443
No 158
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=9.2e-11 Score=123.67 Aligned_cols=131 Identities=19% Similarity=0.270 Sum_probs=98.2
Q ss_pred ccccccccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccc
Q 000943 617 MERMWSGIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIA 696 (1214)
Q Consensus 617 l~~l~~~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~ 696 (1214)
++.+|..+..+++|++|+|++|.... +|.+.++++|++|+|++| .+..+|..+..+++|++|+|++| .++.+|....
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSGIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCcccc
Confidence 44455566777788888887775443 567777888888888875 45577777777788888888885 5666775447
Q ss_pred cccccceecccccCCCCCc--cccCCCCcceEEEeeCccCcccCcc-----------cCCCCCCcEEe
Q 000943 697 MIHLRKLVLSGCSKLKKFP--EVVGSMECLLELFLDGTAIEELPSS-----------IQLLNGLILLN 751 (1214)
Q Consensus 697 l~~L~~L~Ls~c~~l~~lp--~~~~~l~~L~~L~L~~~~i~~lp~~-----------i~~l~~L~~L~ 751 (1214)
+++|++|++++|. +..++ ..+..+++|++|++++|.+...++. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8899999999875 44444 3688999999999999998765332 77899999997
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.1e-07 Score=108.47 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=112.5
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE-eehhhhccCCHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA-NVREISEKGGLISLQKQL 267 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~~l 267 (1214)
....++|++..++.+..++..+ ....+.++|++|+||||+|+++++.+........++. +.. ...+... ....
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~-~~~~ 96 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS---DERGINV-IREK 96 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT---CHHHHHT-THHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc---ccCchHH-HHHH
Confidence 3467999999999999988754 3334899999999999999999987643321111221 111 0000000 0011
Q ss_pred HHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcch-hhhc-Ccc
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHL-LTTY-GVD 343 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~~~~-~~~ 343 (1214)
+....... ....+++.++|+|+++.. +....+...+.....+.++|+||..... .... ...
T Consensus 97 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11100000 001256889999999854 4455555444444567889998876532 1111 112
Q ss_pred ceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 344 EVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
..+++.+++.++..+++...+...... -..+..+.+++.++|.|..+..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 478999999999999998876433321 123566788999999998654443
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.78 E-value=3.5e-07 Score=104.13 Aligned_cols=253 Identities=18% Similarity=0.112 Sum_probs=147.6
Q ss_pred cccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..+.++|++..++++...+... ....+.|.|+|++|+|||++|+++++.....| ...+... .....
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~---~~~~~---- 78 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTSGPA---IEKPG---- 78 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE----EEECTTT---CCSHH----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE----EEEeccc---cCChH----
Confidence 3468999999999988887631 23346788999999999999999998764322 2221111 11111
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhC---CCcEEEEEeCCCCHH--HHHHHhcccCCC------------------C
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLR---YRRVLLIIDDAFDLK--QLESLAGEREWF------------------G 322 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~~~--~l~~l~~~~~~~------------------~ 322 (1214)
.+...+. .++.+|+||+++... ....+...+... .
T Consensus 79 ----------------------~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 79 ----------------------DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ----------------------HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ----------------------HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1111111 356789999998642 233332211110 1
Q ss_pred CCcEEEEEeCCcchh-hhc--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000943 323 PGSRIIITSRDEHLL-TTY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFL 399 (1214)
Q Consensus 323 ~gs~IIiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L 399 (1214)
+..++|.||...... ..+ .....+++.+++.++..+++...+....... ..+..+.++++++|+|-.+..+...+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 245677777654221 111 1235789999999999999988774433221 13567789999999998877665443
Q ss_pred CC------C---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCC--CCCHHHHHHHHhhCCCcch
Q 000943 400 CG------K---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHR--GKSRDYVTKILDYCDFDAV 468 (1214)
Q Consensus 400 ~~------~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~--~~~~~~l~~~~~~~~~~~~ 468 (1214)
.. . +.+....++..+ ...+..+++.++..+..++.... ......+.+.++.......
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 21 1 223333333322 22345788888888877664433 3446666665543211112
Q ss_pred hhhH-HhhccCceEEecCCeE
Q 000943 469 IGIR-VLIDKSLIEISSGNRL 488 (1214)
Q Consensus 469 ~~l~-~L~~~sLi~~~~~~~~ 488 (1214)
..++ .+++.++|.....++.
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~ 303 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRV 303 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEE
T ss_pred HHHhHHHHHhcchhcCCccce
Confidence 2233 3888999987754543
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=4.7e-07 Score=105.97 Aligned_cols=233 Identities=13% Similarity=0.182 Sum_probs=118.2
Q ss_pred ccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEecCCCCCCCccCcccccccccceecc
Q 000943 627 LSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNLKDCTDLTTLPNKIAMIHLRKLVLS 706 (1214)
Q Consensus 627 L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls 706 (1214)
+..++.+.+.++-.......|.++ +|+.+.|..+ +..++...+.-.+|+.+.+.+ .++.++..
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~------------ 174 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS--TLEQLKED------------ 174 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCCCCEEECCT--TCCEECSS------------
T ss_pred cCCccEEEECCccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCCCceEEEeCC--CccEehHH------------
Confidence 355566666543221112235554 5777776542 555554333224566665553 34444332
Q ss_pred cccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCcCC-cccCCCCCCCEEEecCCCCCCcc
Q 000943 707 GCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVGLP-STINDLTSLITLNLSGCSKSKNV 785 (1214)
Q Consensus 707 ~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~sL~~L~ls~c~~l~~~ 785 (1214)
.+.++.+|+.+++..|.+..+|...-...+|+.+.|..+ +..++ ..+.++++|+.+.+..+ +..+
T Consensus 175 ----------aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I 240 (401)
T 4fdw_A 175 ----------IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTI 240 (401)
T ss_dssp ----------TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEE
T ss_pred ----------HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCc
Confidence 344444555555555555555444333455555555432 22222 23445555555555432 1111
Q ss_pred C-----CCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC--CcCCCCCCCEEec
Q 000943 786 G-----VESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP--SLLGLCSLTKLDL 857 (1214)
Q Consensus 786 p-----l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp--~~~~l~~L~~L~L 857 (1214)
+ -.+|+.+.+. +.++.+ ...|..|++|+.+.+.++...... ...++ .|.++++|+.++|
T Consensus 241 ~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~------------~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 241 GQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP------------EAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT------------TCEECTTTTTTCTTCCEECC
T ss_pred cccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc------------ccEECHHHhhCCccCCeEEe
Confidence 1 1234444442 223333 446677888888888766543110 00122 2667778888888
Q ss_pred CCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCEEeecCC
Q 000943 858 SDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 858 s~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~C 908 (1214)
.+ ++.. ++ ..+.++++|+.|.|.. +++.++ ..+.++ +|+.|++.++
T Consensus 308 ~~-~i~~--I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 308 PE-SIRI--LGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CT-TCCE--ECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CC-ceEE--EhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC
Confidence 74 3422 33 4566778888888844 366665 456677 7888888775
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.73 E-value=3.9e-07 Score=106.64 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=117.3
Q ss_pred cccccccccccccccccc-cccccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCccCCCccCccccCCCCCcEEec
Q 000943 606 NFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVNL 682 (1214)
Q Consensus 606 ~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~L 682 (1214)
+|..+.+..+ ++.+... |.. .+|+.+.|..+ +..++ .|.+|++|+.++|.+ +.+..++.......+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence 4556665544 5555433 333 35666666542 22222 366666666666665 345555555444566666666
Q ss_pred CCCCCCCccCccc--ccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcccCCCCCCcEEecCCCCCCCc
Q 000943 683 KDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSSIQLLNGLILLNLEKCTHLVG 760 (1214)
Q Consensus 683 ~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~ 760 (1214)
.. .++.++... ++.+|+.+.|.. .++.++...-.-.+|+.+.|.+ .+..
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~-------------------------~l~~I~~~aF~~~~L~~i~lp~--~i~~ 261 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPE-------------------------NVSTIGQEAFRESGITTVKLPN--GVTN 261 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCT-------------------------TCCEECTTTTTTCCCSEEEEET--TCCE
T ss_pred CC--chheehhhHhhCCCCCCEEecCC-------------------------CccCccccccccCCccEEEeCC--CccE
Confidence 53 244444332 444555555543 1333332211114555555532 1222
Q ss_pred C-CcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCC-cccccccCCCcEEeecCCCCCCCCCcccccccCCc
Q 000943 761 L-PSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHN 838 (1214)
Q Consensus 761 l-p~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~ 838 (1214)
+ +..+.++++|+.+.+.++... .+.+..+ +..|..|++|+.+.+.++ +.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~--------------~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-------------- 312 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFN--------------DDPEAMIHPYCLEGCPKLARFEIPES-IR-------------- 312 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCC--------------CCTTCEECTTTTTTCTTCCEECCCTT-CC--------------
T ss_pred EChhHhhCCCCCCEEEeCCcccc--------------CCcccEECHHHhhCCccCCeEEeCCc-eE--------------
Confidence 3 234566666666666554322 0011111 234556667777766532 11
Q ss_pred ccccCC--CcCCCCCCCEEecCCCCCCCCCc-ccccCCCCCCcEEeCCCCCCeecCc-ccCCCC-CCCEEee
Q 000943 839 VALRLP--SLLGLCSLTKLDLSDCNLGEGAI-PSDIGNLCSLKELCLSKNKFILLPE-SISCLS-KLWIIDL 905 (1214)
Q Consensus 839 ~~~~lp--~~~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~-~L~~L~L 905 (1214)
.++ .|.++.+|+.|.|..+ +.. + +..+.++ +|+.|++.+|.+..++. .+..++ +++.|.+
T Consensus 313 ---~I~~~aF~~c~~L~~l~lp~~-l~~--I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 313 ---ILGQGLLGGNRKVTQLTIPAN-VTQ--INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp ---EECTTTTTTCCSCCEEEECTT-CCE--ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred ---EEhhhhhcCCCCccEEEECcc-ccE--EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 111 2667788888888554 422 3 3456777 89999999987776653 333342 3444444
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=1e-07 Score=97.91 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=68.2
Q ss_pred cEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCC
Q 000943 678 VSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCT 756 (1214)
Q Consensus 678 ~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 756 (1214)
+.+++++ +.++.+|..+. ++|++|+|++|......|..++++++|++|+|++|.+..+|.. +..+++|+.|+|++|.
T Consensus 15 ~~l~~~~-n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCC-CCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3455554 34455555442 5666666666654444466777788888888888888887765 4678888888888775
Q ss_pred CCCcCCcccCCCCCCCEEEecCCCCC
Q 000943 757 HLVGLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 757 ~l~~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
.....+..+..+++|+.|++++|...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 54333334777888888888877643
No 164
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=1.2e-07 Score=96.96 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=65.3
Q ss_pred cEEecCCCCCCCccCcccccccccceecccccCCCCCccccCCCCcceEEEeeCccCcccCcc-cCCCCCCcEEecCCCC
Q 000943 678 VSVNLKDCTDLTTLPNKIAMIHLRKLVLSGCSKLKKFPEVVGSMECLLELFLDGTAIEELPSS-IQLLNGLILLNLEKCT 756 (1214)
Q Consensus 678 ~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~ 756 (1214)
+.|++++ +.++.+|..+ .++|++|+|++|......|..++.+++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus 12 ~~l~~s~-n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCC-CCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3444444 3344455433 25566666666544444456677777777777777777777765 4677778888887775
Q ss_pred CCCcCCcccCCCCCCCEEEecCCCCC
Q 000943 757 HLVGLPSTINDLTSLITLNLSGCSKS 782 (1214)
Q Consensus 757 ~l~~lp~~l~~L~sL~~L~ls~c~~l 782 (1214)
.....+..+..+++|+.|++++|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 54444445777888888888777643
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=1.4e-07 Score=96.45 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=67.2
Q ss_pred ceEEEecCCCCCCCCCCCCccccccccccccccccc-ccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCcc
Q 000943 585 LRFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCT 662 (1214)
Q Consensus 585 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~ 662 (1214)
.+.++++++.++.+|..+ +.+|++|+|++|.+..+ |..+..+++|++|+|++|+.....+. |.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 356777777777777655 46777777777777766 34467777777777777765544443 567777777777774
Q ss_pred CCCccCc-cccCCCCCcEEecCCCC
Q 000943 663 RLRDIHP-SLLLHKNLVSVNLKDCT 686 (1214)
Q Consensus 663 ~l~~lp~-si~~l~~L~~L~L~~c~ 686 (1214)
.+..+|+ .+..+++|++|+|++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4555554 36667777777777653
No 166
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.60 E-value=1.4e-07 Score=96.84 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=65.5
Q ss_pred eEEEecCCCCCCCCCCCCccccccccccccccccc-ccccccccCccEEecCCCcCCCCCCC-CCCCCCccEEeccCccC
Q 000943 586 RFLEWHGYPFKSLPSNFQPENFFELNMCYSRMERM-WSGIKPLSNLKIMRLCNAKNLISTPD-LTGLPNLEELDLRGCTR 663 (1214)
Q Consensus 586 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~L~~L~~L~Ls~~~~l~~~p~-~~~l~~L~~L~L~~c~~ 663 (1214)
+.++++++.+..+|..+ +.+|+.|+|++|.+..+ |..+..+++|++|+|++|+....++. |.++++|++|+|++| .
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-c
Confidence 56677777777777665 36777777777777766 34567777777777777755444333 567777777777774 4
Q ss_pred CCccCcc-ccCCCCCcEEecCCC
Q 000943 664 LRDIHPS-LLLHKNLVSVNLKDC 685 (1214)
Q Consensus 664 l~~lp~s-i~~l~~L~~L~L~~c 685 (1214)
+..+|.. +..+++|++|+|++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 5555554 666777777777764
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=1.1e-06 Score=99.60 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=112.0
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc-ccCccEEEEeehhhhccCCHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH-EFEGSSFLANVREISEKGGLISLQKQL 267 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~l 267 (1214)
....++|++..++.+...+..+ ....+.++|++|+|||++|+.+++.+.. .+...+...+... ..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---~~~-------- 81 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---ERG-------- 81 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS---TTC--------
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc---ccC--------
Confidence 3467999999999998888653 2233889999999999999999987632 2221112111111 000
Q ss_pred HHhhhcCCCCCcccccchHHHHHHH--h-CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcc-hhhhc-
Q 000943 268 LSQLLKLPDSGIWDVYDGLKMIGTR--L-RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEH-LLTTY- 340 (1214)
Q Consensus 268 l~~ll~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~- 340 (1214)
.............. + .+++.++|+|+++.. +....+...+.....+.++|+||.... +....
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 00111111111111 1 256889999999854 445666665555567788888887643 22211
Q ss_pred CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 341 GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
.....+++.+++.++..+++...+....... ..+....+++.++|.+..+..
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 2234899999999999999988764433221 134567788999999876543
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.57 E-value=4.7e-06 Score=95.34 Aligned_cols=264 Identities=17% Similarity=0.143 Sum_probs=150.4
Q ss_pred cccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
....++|++..++++..++... ......|.|+|++|+|||++|+++++.....| ...+... ...... ..
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~---~~~~~~-~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPM---IEKSGD-LA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGG---CCSHHH-HH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchh---ccchhH-HH
Confidence 3468999999999999888743 23456689999999999999999988754332 1111111 011111 00
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCC------------------CCCc
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWF------------------GPGS 325 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~------------------~~gs 325 (1214)
. .+.. ..+..+|+||+++.. .....+...+... .++.
T Consensus 99 ~---------------------~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 99 A---------------------ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp H---------------------HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred H---------------------HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1 1111 245678999999854 2223332221110 1235
Q ss_pred EEEEEeCCcchh-hhc--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhh---
Q 000943 326 RIIITSRDEHLL-TTY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFL--- 399 (1214)
Q Consensus 326 ~IIiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L--- 399 (1214)
++|.||...... ..+ ..+..+++++++.++..+++...+...... -..+..+.+++.+.|+|-.+..+...+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666666553221 111 223689999999999999998876433221 123556778889999995554333221
Q ss_pred ---CCC---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCC--CCHHHHHHHHhhCCCcchhhh
Q 000943 400 ---CGK---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRG--KSRDYVTKILDYCDFDAVIGI 471 (1214)
Q Consensus 400 ---~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~~~l 471 (1214)
.+. +.+.....+.. +..+...++..+++.+..++-. .+ .....+.+.++...-.....+
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l 300 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVI 300 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTT
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHH
Confidence 111 22333333222 2233455677667777666654 32 245666665543322223345
Q ss_pred H-HhhccCceEEecCCeEEecHHHHHHH
Q 000943 472 R-VLIDKSLIEISSGNRLWMHDLLQEMG 498 (1214)
Q Consensus 472 ~-~L~~~sLi~~~~~~~~~mHdLv~e~~ 498 (1214)
+ .|++.++|.....+++....-+..+.
T Consensus 301 ~~~l~~~gli~~~~~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 301 EPYLLANGYIERTAKGRIASAKSYSALK 328 (338)
T ss_dssp HHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred hHHHHHcCceecCCCcccccHHHHHHhc
Confidence 5 78999999988777765544444443
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.55 E-value=9.7e-07 Score=102.58 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=113.3
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLS 269 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 269 (1214)
...++|++..++.+...+..+ ...+.+.|+|++|+||||+|+++++.+....... . ....... ....+..
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~-------~~~~~~~-~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-A-------TPCGVCD-NCREIEQ 84 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-S-------SCCSSSH-HHHHHHT
T ss_pred hhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-C-------CCCcccH-HHHHHhc
Confidence 457999999999999988754 2345788999999999999999998764322100 0 0000000 0011110
Q ss_pred h----hhcCCCCCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcch-h
Q 000943 270 Q----LLKLPDSGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEHL-L 337 (1214)
Q Consensus 270 ~----ll~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~v-~ 337 (1214)
. +...........+ ....+.+.+ .+++.++|+||++.. .....+...+.....+..+|++|....- .
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SCCSSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred cCCCceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0 0000000000111 122233332 246789999999853 4455555444334566778888765432 1
Q ss_pred hhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 000943 338 TTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLG 396 (1214)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg 396 (1214)
... .....+++.+++.++..+++...+....... ..+.+..+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 2236889999999999999987764322221 13456789999999998776554
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=3.1e-06 Score=99.15 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=45.5
Q ss_pred cCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCEEeecCCcCCCcccCCccccce
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWIIDLEECKRLQSLSQLPSNIEE 923 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~C~~L~~lp~lp~sL~~ 923 (1214)
+.++.+|+.+.+.++ +.. ++ ..+.++.+|+.++|.. +++.++ ..+.+|++|+.+.|.. .++.++.-
T Consensus 293 F~~~~~L~~i~l~~~-i~~--I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~------ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKF--IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPL--SLRKIGAN------ 360 (394)
T ss_dssp TTTCTTCCEEEECTT-CCE--ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTT------
T ss_pred ccccccccccccccc-cce--echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECc--cccEehHH------
Confidence 556677787777654 321 32 3466778888888854 366665 4566777777777643 23333321
Q ss_pred eeecCccccccc
Q 000943 924 VRLNGCASLGTL 935 (1214)
Q Consensus 924 L~l~~C~~L~~l 935 (1214)
-..+|.+|+++
T Consensus 361 -aF~~C~~L~~i 371 (394)
T 4fs7_A 361 -AFQGCINLKKV 371 (394)
T ss_dssp -TBTTCTTCCEE
T ss_pred -HhhCCCCCCEE
Confidence 24566666654
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=5.9e-06 Score=96.72 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=65.3
Q ss_pred cccccCCCcEEeecCCCCCCCCCcccccccCCcccccCC--CcCCCCCCCEEecCCCCCCCCCc-ccccCCCCCCcEEeC
Q 000943 806 SIFSMQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLP--SLLGLCSLTKLDLSDCNLGEGAI-PSDIGNLCSLKELCL 882 (1214)
Q Consensus 806 ~~~~l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp--~~~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~L 882 (1214)
.+..+.+|+.+.+..+-. .++ .+.++.+|+.++|.++ +.. + ...+.++.+|+.+.|
T Consensus 292 ~F~~~~~L~~i~l~~~i~------------------~I~~~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVK------------------FIGEEAFESCTSLVSIDLPYL-VEE--IGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTTTCTTCCEEEECTTCC------------------EECTTTTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCEECC
T ss_pred cccccccccccccccccc------------------eechhhhcCCCCCCEEEeCCc-ccE--EhHHhccCCCCCCEEEE
Confidence 456777888888754310 111 2677888999998654 422 4 346788999999999
Q ss_pred CCCCCeecC-cccCCCCCCCEEeecCCcCCCcccCCccccceeeecCccccccc
Q 000943 883 SKNKFILLP-ESISCLSKLWIIDLEECKRLQSLSQLPSNIEEVRLNGCASLGTL 935 (1214)
Q Consensus 883 ~~n~l~~lp-~~i~~l~~L~~L~L~~C~~L~~lp~lp~sL~~L~l~~C~~L~~l 935 (1214)
..+ ++.++ ..+.+|++|+.++|... ++.+ . -...+|++|+.+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-------~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR--LEQY-------R-YDFEDTTKFKWI 393 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-------G-GGBCTTCEEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC--CEEh-------h-heecCCCCCcEE
Confidence 766 77776 46888999999988642 2222 1 136678887764
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.7e-06 Score=93.83 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=99.2
Q ss_pred cCcccchhhHHHHHHHHhh--hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC-----c--cEEEEeehhhhccCCHH
Q 000943 191 KDLVGIDSRWKKLRFLIDK--ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE-----G--SSFLANVREISEKGGLI 261 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~--~~~~~~~~~~~~~~~~~ 261 (1214)
+.+.|||+|++++...|.. .......+.|+|++|.|||++|+++++.+..... . .+++. .....+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHH
Confidence 4489999999999988873 2455678899999999999999999998754321 1 22332 22234456
Q ss_pred HHHHHHHHhhhcCCCCCcccccchHHHHHHHh---CCCcEEEEEeCCCCHH---HHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 262 SLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL---RYRRVLLIIDDAFDLK---QLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 262 ~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~---~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
.+...++.++.+.... ..........+...+ .++++++|||+++... .+-.+............||.++....
T Consensus 96 ~~~~~I~~~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 6777777776443211 111112222222322 4578999999998653 23333221000011223334443322
Q ss_pred hh---------hhcCccceeecCCCCHHHHHHHHHHhhh
Q 000943 336 LL---------TTYGVDEVLKLKELHDDEALQLFCKKAF 365 (1214)
Q Consensus 336 v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (1214)
.. ..++ ...+.+++++.+|..+++..++.
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 21 1121 24789999999999999988863
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.34 E-value=1.5e-05 Score=91.74 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=115.1
Q ss_pred chhHHHHHHHhhhhcccCccccccccccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHH
Q 000943 164 NESEFIVDIVKDILKMSSKIPAKFDIFKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARV 233 (1214)
Q Consensus 164 ~e~~~i~~i~~~i~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~ 233 (1214)
.+..+++.+...+ ..+.. +...+.++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||++
T Consensus 62 ~~~~~~~~i~~~i--~~~~~---~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 62 LEPKMIELIMNEI--MDHGP---PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp SCHHHHHHHHHHT--BCCSC---CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHH
T ss_pred CChHHHHHHHhhc--ccCCC---CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHH
Confidence 3455666666666 43332 23346799999999999887752 123456789999999999999999
Q ss_pred HHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHH-HHHHhCCCcEEEEEeCCCCH----
Q 000943 234 VYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKM-IGTRLRYRRVLLIIDDAFDL---- 308 (1214)
Q Consensus 234 v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~---- 308 (1214)
+++..... ++..+........ . ......... +......++.+|+||+++..
T Consensus 137 ia~~~~~~----~~~i~~~~l~~~~-~-------------------g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~ 192 (357)
T 3d8b_A 137 IASQSGAT----FFSISASSLTSKW-V-------------------GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192 (357)
T ss_dssp HHHHTTCE----EEEEEGGGGCCSS-T-------------------THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-
T ss_pred HHHHcCCe----EEEEehHHhhccc-c-------------------chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccC
Confidence 98865332 2222222211110 0 000011111 11222356789999999533
Q ss_pred ---------HHHHHHhcccC----CCCCCcEEEEEeCCcchhh-hc--CccceeecCCCCHHHHHHHHHHhhhcCCCCch
Q 000943 309 ---------KQLESLAGERE----WFGPGSRIIITSRDEHLLT-TY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWK 372 (1214)
Q Consensus 309 ---------~~l~~l~~~~~----~~~~gs~IIiTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 372 (1214)
..+..+...+. ....+..||.||.....+. .. .....+.+...+.++..+++...+........
T Consensus 193 ~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 272 (357)
T 3d8b_A 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272 (357)
T ss_dssp -----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC
T ss_pred CCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc
Confidence 11222222211 1123456666776542221 11 23357789999999999999877643322111
Q ss_pred HHHHHHHHHHHHhCC-ChHHHHHHHh
Q 000943 373 EYEQLSKYVVKYSGG-LPLALSVLGS 397 (1214)
Q Consensus 373 ~~~~~~~~i~~~~~G-lPLAl~~lg~ 397 (1214)
.+....+++.+.| .+-.+..+..
T Consensus 273 --~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 273 --EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456678888888 5556666544
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=4.1e-06 Score=101.41 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred cccCcccchhhHHHHHHHHhhhc---------------CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehh
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKEL---------------NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVRE 253 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~ 253 (1214)
....++|++..++++..++.... ...+.+.|+|++|+||||+|+++++... ..+...+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~-- 110 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNA-- 110 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECT--
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeC--
Confidence 34679999999999999987311 1347899999999999999999998762 11222211
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH--HhCCCcEEEEEeCCCCHH-----HHHHHhcccCCCCCCcE
Q 000943 254 ISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT--RLRYRRVLLIIDDAFDLK-----QLESLAGEREWFGPGSR 326 (1214)
Q Consensus 254 ~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~--~L~~kr~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~ 326 (1214)
+.... .......+....... .+........+ ...+++.+||+|+++... .+..+..... ..+..
T Consensus 111 -s~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~ 181 (516)
T 1sxj_A 111 -SDVRS-KTLLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTP 181 (516)
T ss_dssp -TSCCC-HHHHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSC
T ss_pred -CCcch-HHHHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCC
Confidence 11111 122222222211110 00000000000 123578999999997431 1233322211 12344
Q ss_pred EEEEeCCcc---hhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh-HHHHHHH
Q 000943 327 IIITSRDEH---LLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP-LALSVLG 396 (1214)
Q Consensus 327 IIiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-LAl~~lg 396 (1214)
||+++.+.. +.........+++++++.++..+.+...+.......+ .+....|++.++|.+ -|+..+.
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 665554422 2222233457899999999999999877654332211 234667888999854 4555543
No 175
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=1.2e-06 Score=90.96 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=41.2
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++||+++++++.+.+.. ...+.+.|+|++|+|||++|+++++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46799999999999998864 33466789999999999999999987643
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=1.8e-06 Score=93.38 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=98.6
Q ss_pred cccCcccch---hhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGID---SRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..++|+|.+ ..++.+..+... ...+.+.|+|++|+||||+|+++++..........++. ..+.....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~------- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS------- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC-------
T ss_pred ChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH-------
Confidence 346788743 444555555543 24577889999999999999999987765533344443 22211100
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--H--HHHHhcccCCC-CCC-cEEEEEeCCcch-h-
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--Q--LESLAGEREWF-GPG-SRIIITSRDEHL-L- 337 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~--l~~l~~~~~~~-~~g-s~IIiTTR~~~v-~- 337 (1214)
.... +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...- .
T Consensus 96 -----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 011 346789999997532 1 22222211100 122 257887764321 0
Q ss_pred ---hh----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 338 ---TT----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 338 ---~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.. +.....+++++++.++..+++...+....... ..+..+.+++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHH
Confidence 11 11126899999999999999988764322211 1355677888999988666544
No 177
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=1e-06 Score=101.34 Aligned_cols=62 Identities=21% Similarity=0.197 Sum_probs=27.8
Q ss_pred cCCCCcceEEEeeCccCcccCc-ccCCCCCCcEEecCCCCCCCcCCcc-cCCCCCCCEEEecCCCC
Q 000943 718 VGSMECLLELFLDGTAIEELPS-SIQLLNGLILLNLEKCTHLVGLPST-INDLTSLITLNLSGCSK 781 (1214)
Q Consensus 718 ~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~sL~~L~ls~c~~ 781 (1214)
++++++|+.|+|++|.+..+|. .+..+++|+.|+|++|... .+|.. +..++ |+.|+|.+|..
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence 4444444444444444444433 2344555555555544332 23322 22232 66666665554
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=1.1e-05 Score=89.71 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=104.1
Q ss_pred ccccCcccchhhHHHHHHHHhhh-----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhc
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKE-----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISE 256 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~ 256 (1214)
...++++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....| +..+..+...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHHH
Confidence 34578999999999998877531 13456689999999999999999988764332 2222211111
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcccccch-HHHHHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccC
Q 000943 257 KGGLISLQKQLLSQLLKLPDSGIWDVYDG-LKMIGTRLRYRRVLLIIDDAFDL----------------KQLESLAGERE 319 (1214)
Q Consensus 257 ~~~~~~l~~~ll~~ll~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~ 319 (1214)
.. ....... ...+......++.+|+||+++.. ..+..+.....
T Consensus 90 ~~--------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 90 KF--------------------IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp CS--------------------TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred hc--------------------cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 00 0000011 11222223456789999999754 11223332221
Q ss_pred --CCCCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCC-ChHH
Q 000943 320 --WFGPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGG-LPLA 391 (1214)
Q Consensus 320 --~~~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLA 391 (1214)
....+..||.||........ ......+.++.++.++..+++...+.......+ .....++..+.| .|-.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHH
Confidence 11346678888876533321 123457899999999999999888744332211 113456666666 4434
Q ss_pred HHH
Q 000943 392 LSV 394 (1214)
Q Consensus 392 l~~ 394 (1214)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=2.1e-05 Score=86.80 Aligned_cols=197 Identities=12% Similarity=0.055 Sum_probs=104.2
Q ss_pred cCcccchhhHHHHHHH-------Hhh-hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHH
Q 000943 191 KDLVGIDSRWKKLRFL-------IDK-ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~-------L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
..++|.+..++++... +.. .....+.+.|+|++|+|||++|+++++.....| +.+. ............
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~~~~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPDKMIGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGGGCTTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHHHhcCCchHH
Confidence 4678888777666552 221 134567899999999999999999998753321 1121 111000000000
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH------------HHHHHHhcccC---CCCCCcEE
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL------------KQLESLAGERE---WFGPGSRI 327 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~------------~~l~~l~~~~~---~~~~gs~I 327 (1214)
. .......+......++.+|+||+++.. ..++.+..... ..+....|
T Consensus 109 ~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 109 K------------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp H------------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred H------------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0 001112222333467889999998653 11233322222 12334557
Q ss_pred EEEeCCcchhhhc----CccceeecCCCCH-HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCC------ChHHHHHHH
Q 000943 328 IITSRDEHLLTTY----GVDEVLKLKELHD-DEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGG------LPLALSVLG 396 (1214)
Q Consensus 328 IiTTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G------lPLAl~~lg 396 (1214)
|.||.....+... .....+++++++. ++..+++.... ... .+....+++.+.| ..-++.++-
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 7788776444331 1245788999988 66666655421 111 3446678888877 334444433
Q ss_pred hhhCCCChHHHHHHHHHHhc
Q 000943 397 SFLCGKTTKEWESSIQRLKR 416 (1214)
Q Consensus 397 ~~L~~~~~~~w~~~l~~l~~ 416 (1214)
..........+..++..+..
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHH
T ss_pred HHhhhchHHHHHHHHHHHHH
Confidence 33333344555555555443
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2e-05 Score=90.61 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=110.1
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc--ccCccEEEEeehhhhccCCHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH--EFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
....++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++.+.. .+...+...+. +...+...+. +
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~~~~~-~ 108 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIVR-E 108 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHHT-T
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccchHHHH-H
Confidence 34679999999999998886442 223889999999999999999987642 23222222211 1112222221 1
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcc-hhhhc-Cc
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEH-LLTTY-GV 342 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~ 342 (1214)
.+........... ... .....-..++-+|++|+++.. .....+...+.......++|++|.... +.... ..
T Consensus 109 ~~~~~~~~~~~~~--~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKP--SKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCC--CTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhccccc--chh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 1111111100000 000 001111245679999998753 333444433333345677888776542 22221 11
Q ss_pred cceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 343 DEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
...+++.+++.++..+.+...+....... ..+..+.+++.++|.|-.+..
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 24789999999999999988764332221 135677899999999976443
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=5.1e-08 Score=113.01 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=28.8
Q ss_pred CCcceEEEeeCccCcc-----cCcccCCCCCCcEEecCCCCCCC----cCCcccCCCCCCCEEEecCCC
Q 000943 721 MECLLELFLDGTAIEE-----LPSSIQLLNGLILLNLEKCTHLV----GLPSTINDLTSLITLNLSGCS 780 (1214)
Q Consensus 721 l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~L~sL~~L~ls~c~ 780 (1214)
.++|++|+|++|.+.. ++..+...++|++|+|++|.... .++..+..+++|++|+|++|.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 4456666666665542 33334455555555555554321 122333344445555554443
No 182
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=1.2e-08 Score=118.42 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCCCEEecCCCCCCCC---CcccccCCCCCCcEEeCCCCCCe
Q 000943 849 LCSLTKLDLSDCNLGEG---AIPSDIGNLCSLKELCLSKNKFI 888 (1214)
Q Consensus 849 l~~L~~L~Ls~~~l~~~---~lp~~l~~l~sL~~L~L~~n~l~ 888 (1214)
.++|+.|+|++|.+.+. .++..+...++|++|+|++|.++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 34556666666655321 12233334455666666666554
No 183
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=1.6e-06 Score=99.57 Aligned_cols=101 Identities=22% Similarity=0.128 Sum_probs=76.3
Q ss_pred ccccCCc-cccCCcccccccCCCcEEeecC-CCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCccc
Q 000943 792 GLGSSRT-VLRNPESSIFSMQNFEALSFLG-WTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIPS 869 (1214)
Q Consensus 792 ~L~l~~~-~l~~~~~~~~~l~~L~~L~l~~-~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp~ 869 (1214)
.++++++ .++.+|. +..+.+|+.|+|++ |.+....+ ..+.++++|+.|+|++|++. +..|.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~---------------~~~~~l~~L~~L~l~~N~l~-~~~~~ 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLEL---------------RDLRGLGELRNLTIVKSGLR-FVAPD 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECG---------------GGSCSCCCCSEEECCSSCCC-EECTT
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcCh---------------hHhccccCCCEEECCCCccc-eeCHH
Confidence 3466666 7888888 88889999999986 66542110 12778899999999999884 34556
Q ss_pred ccCCCCCCcEEeCCCCCCeecCcccCCCCCCCEEeecCCc
Q 000943 870 DIGNLCSLKELCLSKNKFILLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 870 ~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
.+..|++|+.|+|++|.|+.+|..+.....|+.|+|.+++
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred HhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 7889999999999999999888765444449999998764
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.26 E-value=2.5e-05 Score=85.58 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=101.2
Q ss_pred ccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++++|.+..++++.+++..- ....+.|.|+|++|+|||++|+++++.....| +..+.........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhcc
Confidence 467899998888887765421 12345688999999999999999998764332 2222211111000
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH-----------------HHHHHhcccCCC-
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK-----------------QLESLAGEREWF- 321 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~l~~l~~~~~~~- 321 (1214)
-. ........+.......+.+|+||+++... .+..+.......
T Consensus 81 ~~-------------------~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 81 GL-------------------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp TH-------------------HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred Ch-------------------hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00 00011122222333567899999998641 123333222211
Q ss_pred -CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHH
Q 000943 322 -GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSV 394 (1214)
Q Consensus 322 -~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~ 394 (1214)
..+..||.||.....+.. . .....+.++..+.++..+++...+........ .......+++.+.|.+- .+..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCHHHHHH
Confidence 235567777765432211 1 23467889999999999999887644332221 12234677888887754 4443
Q ss_pred H
Q 000943 395 L 395 (1214)
Q Consensus 395 l 395 (1214)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=3.5e-07 Score=105.07 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCCCCEEecCCCCCCCCCccccc---CCCCCCcEEeCCCCCCee-----cCcccCCCCCCCEEeecCC
Q 000943 848 GLCSLTKLDLSDCNLGEGAIPSDI---GNLCSLKELCLSKNKFIL-----LPESISCLSKLWIIDLEEC 908 (1214)
Q Consensus 848 ~l~~L~~L~Ls~~~l~~~~lp~~l---~~l~sL~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~C 908 (1214)
.+|+|+.|+|++|.+.+. .+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 356777777777766421 11111 246777777777777663 4444556677777777665
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=9e-06 Score=96.17 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=103.9
Q ss_pred ccCcc-cchhhH--HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCcc-EEEEeehhhhccCCHHHHHH
Q 000943 190 FKDLV-GIDSRW--KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGS-SFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 190 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~ 265 (1214)
.++|| |..... ..+....... .....+.|+|++|+||||||+++++.+...++.. +...+. ..+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~-~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~---------~~~~~ 173 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHP-GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS---------EKFLN 173 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHST-TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH---------HHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH---------HHHHH
Confidence 35566 655443 2233333222 1256789999999999999999999886665433 222211 11223
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----HHHHHhcccCC-CCCCcEEEEEeCCcc-----
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----QLESLAGEREW-FGPGSRIIITSRDEH----- 335 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~~-~~~gs~IIiTTR~~~----- 335 (1214)
++...+... ....+.+.+..++-+|+|||++... ..+.+...+.. ...|..||+||....
T Consensus 174 ~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 174 DLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 333332111 1233444555467899999997432 22233222111 145778999987631
Q ss_pred ----hhhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHH
Q 000943 336 ----LLTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 336 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
+...+.....+.+++++.++..+++...+.......+ .+....|++.++|.+-.+.
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 1111222357899999999999999887743221111 2345677888888875543
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=1.5e-05 Score=91.86 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=104.7
Q ss_pred ccCcccchhhHHHHHHHH-hhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeeh----------------
Q 000943 190 FKDLVGIDSRWKKLRFLI-DKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVR---------------- 252 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~---------------- 252 (1214)
...++|.+..++.+..++ ..+ .... +.|+|+.|+||||+|+.++..+...-...+++....
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 467999999999888887 433 2233 899999999999999999986533222211111000
Q ss_pred ----hhh-ccCC--HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCC
Q 000943 253 ----EIS-EKGG--LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREWFGP 323 (1214)
Q Consensus 253 ----~~~-~~~~--~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~ 323 (1214)
+.. ...+ .....++++..+...... .... .+. .+.+++-++|||+++..+ ....+...+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 000 0000 000112222221110000 0000 000 023467799999998642 23334333332345
Q ss_pred CcEEEEEeCCcc-hhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 324 GSRIIITSRDEH-LLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 324 gs~IIiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
+.++|++|.+.. +.... .....+++.+++.++..+.+...+.......+. .+.+..|++.++|.+-.+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTCHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCCHHHHHH
Confidence 778888887642 22222 223689999999999999998876433221110 24567788999999865443
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.17 E-value=3e-05 Score=89.77 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=105.1
Q ss_pred ccCcccchhhHHHHHHHHh---hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLID---KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
.+.+||++..++.+..+.. .+....+.+.|+|++|+|||++|+++++.+....+. +.+....-.+...+......+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 5689999998877554443 332234689999999999999999999987643221 111111111112223333333
Q ss_pred HHHhhhcCC--------------------CC-------C-----cccccchHHHHHHH--hCCC----cEEEEEeCCCCH
Q 000943 267 LLSQLLKLP--------------------DS-------G-----IWDVYDGLKMIGTR--LRYR----RVLLIIDDAFDL 308 (1214)
Q Consensus 267 ll~~ll~~~--------------------~~-------~-----~~~~~~~~~~l~~~--L~~k----r~LlVLDdv~~~ 308 (1214)
.+....+.. .. . ...+.......... ..++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 333211100 00 0 00111111111111 1133 459999999864
Q ss_pred --HHHHHHhcccCCCCCCcEEEEEeCC-c------------chhhhc-CccceeecCCCCHHHHHHHHHHhhhcCCCCch
Q 000943 309 --KQLESLAGEREWFGPGSRIIITSRD-E------------HLLTTY-GVDEVLKLKELHDDEALQLFCKKAFKTHQPWK 372 (1214)
Q Consensus 309 --~~l~~l~~~~~~~~~gs~IIiTTR~-~------------~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 372 (1214)
+....+...+...... .++++|.. . .+...+ .....+.+++++.++..+++...+.......
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~- 279 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM- 279 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCB-
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 3344444433322223 44444431 1 011111 1124579999999999999998775433221
Q ss_pred HHHHHHHHHHHHhC-CChHHHHH
Q 000943 373 EYEQLSKYVVKYSG-GLPLALSV 394 (1214)
Q Consensus 373 ~~~~~~~~i~~~~~-GlPLAl~~ 394 (1214)
..+..+.+++++. |.|-.+..
T Consensus 280 -~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 280 -SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp -CHHHHHHHHHHHHHSCHHHHHH
T ss_pred -CHHHHHHHHHHhcCCCHHHHHH
Confidence 2345677888887 77765443
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=5e-05 Score=86.05 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=104.7
Q ss_pred cccCcccchhhHHHHHHHHh----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLID----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.-..++|.+..+++|.+.+. ......+-|.++|++|+|||+||+++++.....| +..+..+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l---- 87 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL---- 87 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH----
Confidence 34679999999999988773 1112246789999999999999999998764432 22222111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHH-HHHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccC---CC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKM-IGTRLRYRRVLLIIDDAFDLK-------------QLESLAGERE---WF 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~---~~ 321 (1214)
..... ......... +......++.+|+||+++... ....+...+. ..
T Consensus 88 ---------~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 88 ---------VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp ---------HTTTG-------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred ---------hhccc-------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 11100 011111111 222223577899999998431 1222322221 22
Q ss_pred CCCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 000943 322 GPGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVLG 396 (1214)
Q Consensus 322 ~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg 396 (1214)
..+..||.||.....+.. + .....+.++..+.++..+++..++........ ......+++.+.|. +-.|..+.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667767776433221 1 23457788999999999999988754332211 23456677888774 44444443
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.13 E-value=1.9e-05 Score=88.99 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=89.4
Q ss_pred CcccchhhHHHHHHHHhhh-------------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccC--c-cEEEEeehhhh
Q 000943 192 DLVGIDSRWKKLRFLIDKE-------------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE--G-SSFLANVREIS 255 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~-~~~~~~~~~~~ 255 (1214)
.++|.+..++.+.+++... ......+.|+|++|+|||++|+++++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5899999988888766521 234557899999999999999999987644221 1 22222111110
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCC-----------CHHHHHHHhcccCCCCCC
Q 000943 256 EKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAF-----------DLKQLESLAGEREWFGPG 324 (1214)
Q Consensus 256 ~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~-----------~~~~l~~l~~~~~~~~~g 324 (1214)
.. .. . .........+... ++-+|+||+++ ..+.+..|...+.....+
T Consensus 112 ~~-------------~~-----g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQ-------------YI-----G-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CS-------------ST-----T-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hh-------------cc-----c-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 00 0 0000011111111 34599999998 333445555444434556
Q ss_pred cEEEEEeCCcc----------hhhhcCccceeecCCCCHHHHHHHHHHhhhc
Q 000943 325 SRIIITSRDEH----------LLTTYGVDEVLKLKELHDDEALQLFCKKAFK 366 (1214)
Q Consensus 325 s~IIiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (1214)
..||.||.... +... ....+.+++++.++..+++...+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 78888886432 2221 2368899999999999999887643
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=0.0001 Score=83.27 Aligned_cols=182 Identities=13% Similarity=0.098 Sum_probs=102.4
Q ss_pred ccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
-++++|.+..++.|.+.+.. .....+-|.++|++|+|||+||+++++.... ..++..+..+...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVS--- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHh---
Confidence 46789999988888876641 1123467899999999999999999987621 1122222111100
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCC---CC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDLK-------------QLESLAGEREW---FG 322 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~---~~ 322 (1214)
.. ..........+ ...-..++.+|+||+++... ....+...+.. ..
T Consensus 85 --------------~~---~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 --------------KW---LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp --------------SS---CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred --------------hh---hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 00 00111111222 22223578899999998541 12223222221 13
Q ss_pred CCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 000943 323 PGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVLG 396 (1214)
Q Consensus 323 ~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg 396 (1214)
.+..||.||.....+.. + ..+..+.++..+.++..+++..++....... .......+++.+.|. +-.|..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45566666755422211 1 3446788999999999999988764332211 123456788888876 33355444
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.09 E-value=6.2e-05 Score=84.21 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=102.3
Q ss_pred cccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
....++|.+..++.+.+.+... ....+.+.|+|++|+|||++|+++++.....| +..+........
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~~~ 94 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTSKY 94 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSSSS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhhcc
Confidence 4468999999999998877421 12346789999999999999999988664322 222211110000
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHH-HHHHHhCCCcEEEEEeCCCCH-------------HHHHHHhcccCC----
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLK-MIGTRLRYRRVLLIIDDAFDL-------------KQLESLAGEREW---- 320 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~---- 320 (1214)
......... .+......++.+|+||+++.. .....+...+..
T Consensus 95 --------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 95 --------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp --------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred --------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 000111111 122222357789999999643 111122211111
Q ss_pred -CCCCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 000943 321 -FGPGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVL 395 (1214)
Q Consensus 321 -~~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~l 395 (1214)
.+.+..||.||.....+.. . .....+.++..+.++..+++...+........ .+....+++.+.|.+- ++..+
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 1234567777776432211 1 22356778888888888888877643322211 2356678888888875 55444
Q ss_pred H
Q 000943 396 G 396 (1214)
Q Consensus 396 g 396 (1214)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=7.6e-07 Score=102.29 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=39.0
Q ss_pred CCCcceEEEeeCccCcc-cCccc---CCCCCCcEEecCCCCCCCc----CCcccCCCCCCCEEEecCCCC
Q 000943 720 SMECLLELFLDGTAIEE-LPSSI---QLLNGLILLNLEKCTHLVG----LPSTINDLTSLITLNLSGCSK 781 (1214)
Q Consensus 720 ~l~~L~~L~L~~~~i~~-lp~~i---~~l~~L~~L~L~~c~~l~~----lp~~l~~L~sL~~L~ls~c~~ 781 (1214)
.+++|++|+|.+|.+.. .+..+ ..+++|++|+|+.|..... ++..+..+++|+.|++++|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 46778888887777652 11111 3467788888877654332 344455678888888887754
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.05 E-value=0.00011 Score=84.46 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=102.6
Q ss_pred cccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
...+++|.+..++.|.+.+... ....+-|.|+|++|+|||+||+++++.....| +..+....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l---- 120 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL---- 120 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHH----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHH----
Confidence 3467999999999988876311 12235688999999999999999999774322 22222111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccC---CC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDLK-------------QLESLAGERE---WF 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~---~~ 321 (1214)
.....+ ........+ ......++.+|+||+++... ....+...+. ..
T Consensus 121 ---------~~~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 121 ---------VSKWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp ---------HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred ---------hhhhcc-------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 111000 011111222 22223578999999998532 1222322221 11
Q ss_pred CCCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 000943 322 GPGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVLG 396 (1214)
Q Consensus 322 ~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg 396 (1214)
..+..||.||.....+.. + .....+.++..+.++..+++..++........ ......|++.+.|. +-.|..+.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566667765422211 1 34467889999999999999887744322111 23456677888874 44454443
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.05 E-value=5.1e-05 Score=86.09 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=96.3
Q ss_pred ccCcc-cchhhH--HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 190 FKDLV-GIDSRW--KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 190 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
.++|| |..... ..+..+..........+.|+|++|+||||||+++++.....-...+++. .. .....
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHHH
Confidence 45676 544332 3344444332223467889999999999999999997754312223332 21 12222
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----HHHHHhcccC-CCCCCcEEEEEeCCcch-----
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----QLESLAGERE-WFGPGSRIIITSRDEHL----- 336 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~l~~l~~~~~-~~~~gs~IIiTTR~~~v----- 336 (1214)
+...+.. .....+...+. ++.+|+|||++... ..+.+...+. ....+..||+||.....
T Consensus 80 ~~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 80 MVEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 3222211 01222233332 36789999997542 1222222111 11346678888864311
Q ss_pred ----hhhcCccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 337 ----LTTYGVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 337 ----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
...+.....+++++ +.++..+++...+.......+ .+....+++++ |..-.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 11112225789999 999999999888753332211 34566778888 77643
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=2.3e-05 Score=80.70 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=41.1
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+++++.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46799999999999988864 33456789999999999999999987744
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.01 E-value=7.2e-05 Score=88.23 Aligned_cols=175 Identities=18% Similarity=0.200 Sum_probs=102.3
Q ss_pred cccCcccchhhH---HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHH
Q 000943 189 IFKDLVGIDSRW---KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQK 265 (1214)
Q Consensus 189 ~~~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~ 265 (1214)
..+.+||.+..+ ..+...+..+ ....+.|+|++|+||||+|+.+++.....| +. +. ....+...+ +
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f-----~~-l~--a~~~~~~~i-r 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADV-----ER-IS--AVTSGVKEI-R 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEE-----EE-EE--TTTCCHHHH-H
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCe-----EE-EE--eccCCHHHH-H
Confidence 346799999888 6677777643 346789999999999999999998765443 21 10 111222222 1
Q ss_pred HHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH--HHHHHhcccCCCCCCcEEEE-EeCCcc--hhhh-
Q 000943 266 QLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK--QLESLAGEREWFGPGSRIII-TSRDEH--LLTT- 339 (1214)
Q Consensus 266 ~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IIi-TTR~~~--v~~~- 339 (1214)
.++.. .......+++.+|+||+++... +.+.|...+.. ....+|. ||.+.. +...
T Consensus 93 ~~~~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHHH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 11111 0011124678899999998643 33334333321 2234444 444432 1111
Q ss_pred cCccceeecCCCCHHHHHHHHHHhhhcCC-----CCchHHHHHHHHHHHHhCCChHHHH
Q 000943 340 YGVDEVLKLKELHDDEALQLFCKKAFKTH-----QPWKEYEQLSKYVVKYSGGLPLALS 393 (1214)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLAl~ 393 (1214)
.....++.+.+++.++..+++...+.... ....-..+..+.++++++|.+-.+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 12235889999999999999988764311 1111224567778888999886543
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=0.00068 Score=77.04 Aligned_cols=261 Identities=20% Similarity=0.200 Sum_probs=137.2
Q ss_pred ccCcccchhhHHHHHHHHhhh---cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE---LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQ 266 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ 266 (1214)
...++|.+..++.+...+..+ ......++++|++|.||||||+.++..+...|. ... ..+. .....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~--~~~~~---- 92 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL--VKQGD---- 92 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC--CSHHH----
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh--cCHHH----
Confidence 356889888888887776532 233467899999999999999999987743321 110 0000 00000
Q ss_pred HHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCC--------C----------CCcE
Q 000943 267 LLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWF--------G----------PGSR 326 (1214)
Q Consensus 267 ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~--------~----------~gs~ 326 (1214)
...+...+ .++-++++|+++.. ...+.+....... + +...
T Consensus 93 -------------------l~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 -------------------MAAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 00111112 23456778888743 2222222111000 0 1122
Q ss_pred EE-EEeCCcchhhhc--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHHHhhh----
Q 000943 327 II-ITSRDEHLLTTY--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVLGSFL---- 399 (1214)
Q Consensus 327 II-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~lg~~L---- 399 (1214)
++ .|++...+...+ .....+.+++.+.++..+++.+.+...... ...+.+..|++.+.|.|-.+..+...+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 33 344433322222 122358899999999999998876432222 124567889999999996543332211
Q ss_pred --CCC---ChHHHHHHHHHHhcCCCccHHHHHHHhHhCCCHHHHHHHHhhcccCCC--CCHHHHHHHHhhCCCcchhhhH
Q 000943 400 --CGK---TTKEWESSIQRLKRDSEKDILDILQISFDGLKEIERKIFLDIACFHRG--KSRDYVTKILDYCDFDAVIGIR 472 (1214)
Q Consensus 400 --~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~ 472 (1214)
.+. +.+..+.+++.+.. ...+++...+.++..++-.+++ ...+.+....+......+...+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 111 33333444433321 1235677666666554433333 2344555544332111111222
Q ss_pred -HhhccCceEEecCCeEEecHHHH
Q 000943 473 -VLIDKSLIEISSGNRLWMHDLLQ 495 (1214)
Q Consensus 473 -~L~~~sLi~~~~~~~~~mHdLv~ 495 (1214)
.|+..++|+....+++....-.+
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~~~~~ 322 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTEKAYK 322 (334)
T ss_dssp HHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHHHcCCeecccccHHhhHHHHH
Confidence 78899999999888875544333
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.96 E-value=0.00014 Score=85.94 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=104.3
Q ss_pred cccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
...+++|.+...+.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~----- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD----- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH-----
Confidence 346799999999988877631 1223477899999999999999999987621 1222221111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCH-------------HHHHHHhcccCCC---
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDL-------------KQLESLAGEREWF--- 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~~--- 321 (1214)
+.....+.. ......+ ...-..++.+|+||+++.. .....+...+...
T Consensus 204 --------l~~~~~g~~-------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 204 --------LVSKWLGES-------EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp ----------------C-------CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred --------HHhhhcchH-------HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 011111110 1112222 2222457889999999854 1234454444322
Q ss_pred CCCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 000943 322 GPGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVLG 396 (1214)
Q Consensus 322 ~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~lg 396 (1214)
..+..||.||.....+.. + .....+.++..+.++..++|..++........ ......|++.+.|. +-.|..+.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777765432211 1 33457888889999999999887643321111 23456677888774 43444443
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.95 E-value=6.2e-05 Score=85.39 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=100.9
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
..+.++|.+..++.+..++..+ ....++.+.|++|+|||++|+++++.+...| +.+. . ...+... .++.+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-~----~~~~~~~-i~~~~ 93 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-G----SDCKIDF-VRGPL 93 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-T----TTCCHHH-HHTHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-c----cccCHHH-HHHHH
Confidence 3478999999999999998743 2346778889999999999999988763221 2222 1 1122221 12211
Q ss_pred HhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH---HHHHHhcccCCCCCCcEEEEEeCCcchh-hhc-Ccc
Q 000943 269 SQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK---QLESLAGEREWFGPGSRIIITSRDEHLL-TTY-GVD 343 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~l~~l~~~~~~~~~gs~IIiTTR~~~v~-~~~-~~~ 343 (1214)
....... ...+++-+||+|+++... ....+...+.....+.++|+||....-. ..+ ...
T Consensus 94 ~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 1111000 012477899999999754 3444443333223567888888764311 111 112
Q ss_pred ceeecCCCCHHHHHHHH-------HHhhhcCCCCchHHHHHHHHHHHHhCCChHH
Q 000943 344 EVLKLKELHDDEALQLF-------CKKAFKTHQPWKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 391 (1214)
..+++++++.++..+++ ...+.......+. .+....+++.++|.+-.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHH
Confidence 47899999988854332 2222222211111 25567788888887654
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=0.00021 Score=80.05 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=100.7
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.++++|.+..++++.+.+.. +-...+.|.|+|++|.|||+||+++++.....| +..+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~----i~v~~------- 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKG------- 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE----EEECH-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE----EEEEh-------
Confidence 45799999998888877652 123456789999999999999999998764322 22111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHHH----------------HHHHhcccCC--
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQ----------------LESLAGEREW-- 320 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~----------------l~~l~~~~~~-- 320 (1214)
..+ .....+... ......+.......+.+|++|+++.... ...+...+..
T Consensus 83 --~~l----~~~~~g~~~------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 --PEL----LTMWFGESE------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp --HHH----HHHHHTTCT------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred --HHH----HhhhcCchH------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 112 222222111 1112233333346789999999984311 2223322211
Q ss_pred CCCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCChHH
Q 000943 321 FGPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLPLA 391 (1214)
Q Consensus 321 ~~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlPLA 391 (1214)
...+..||.||.....+.. . .....+.++..+.++..+++..++...... ..+. ..++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 1245677778866533221 1 234678999999999999987776332211 1112 2355566666543
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.94 E-value=0.00021 Score=83.23 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=101.1
Q ss_pred cccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
....++|.+..++.+...+... ....+-|.|+|++|+|||+||++++++.... ++..+.......
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~- 187 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK- 187 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc-
Confidence 3568999999999998877421 1234678999999999999999998865432 222221111000
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHH-HHHHhCCCcEEEEEeCCCCH-------------HHHHHHhcccC----C
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKM-IGTRLRYRRVLLIIDDAFDL-------------KQLESLAGERE----W 320 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~----~ 320 (1214)
. .+ ........ +......++.+|+||+++.. .....+...+. .
T Consensus 188 --------~----~g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 188 --------Y----VG-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred --------c----cc-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 00 00011111 12222346689999999754 01112221111 1
Q ss_pred CCCCcEEEEEeCCcchhhh-c--CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChH-HHHHHH
Q 000943 321 FGPGSRIIITSRDEHLLTT-Y--GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPL-ALSVLG 396 (1214)
Q Consensus 321 ~~~gs~IIiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~lg 396 (1214)
......||.||.....+.. + .....+.+...+.++..+++...+........ .+....+++.+.|..- ++..+.
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1234556667765322211 1 23356889999999999999887744332211 2356678888888544 555554
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.0006 Score=79.50 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=29.0
Q ss_pred cCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCEEeec
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWIIDLE 906 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~ 906 (1214)
+.++++|+.+.+... +.. ++ ..+.++.+|+.+.|..+ ++.+. ..+.+|.+|+.+.|.
T Consensus 284 F~~c~~L~~i~l~~~-i~~--I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITE--LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccccCCCc-ccc--cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 445556666666432 211 22 23455566666666532 44444 345556666666653
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00063 Score=79.36 Aligned_cols=253 Identities=11% Similarity=0.118 Sum_probs=118.2
Q ss_pred Cccccccccccccccccccc-ccccccCccEEecCCCcCCCCCCCCCCCCCccEEeccCccCCCccCccccCCCCCcEEe
Q 000943 603 QPENFFELNMCYSRMERMWS-GIKPLSNLKIMRLCNAKNLISTPDLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVSVN 681 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~-~~~~L~~L~~L~Ls~~~~l~~~p~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~L~ 681 (1214)
...+|..+.+..+ +..+.. .+..+.+|+.+.+..+.....-..|..+.+|+.+.+.. .+..+........+|+.+.
T Consensus 112 ~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ 188 (394)
T 4gt6_A 112 FCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIH 188 (394)
T ss_dssp TCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEE
T ss_pred hcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceecccccccccccc--eeeEeccccccccceeEEE
Confidence 4456666665543 444443 36677777777776543222223367777777777764 3555555444445666666
Q ss_pred cCCCCCCCccCccc--ccccccceecccccCCCCCcccc--------------CCCCcceEEEeeCccCcccC-cccCCC
Q 000943 682 LKDCTDLTTLPNKI--AMIHLRKLVLSGCSKLKKFPEVV--------------GSMECLLELFLDGTAIEELP-SSIQLL 744 (1214)
Q Consensus 682 L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~--------------~~l~~L~~L~L~~~~i~~lp-~~i~~l 744 (1214)
+.. .++.+.... .+.+|+........ .......+ .....+..+.+. +.+..+. ..+..+
T Consensus 189 ip~--~~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c 264 (394)
T 4gt6_A 189 IPA--KVTRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSC 264 (394)
T ss_dssp ECT--TCCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTC
T ss_pred ECC--cccccccchhhhccccceecccccc-cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeec
Confidence 543 122221111 23333333322211 00000000 000111111111 0111111 123445
Q ss_pred CCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCC-cccccccCCCcEEeecCCCC
Q 000943 745 NGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNP-ESSIFSMQNFEALSFLGWTL 823 (1214)
Q Consensus 745 ~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~~ 823 (1214)
.+|+.+.+.+.. ...-...+.++++|+.+.+.. .++.+ ...|..|.+|+.+.+..+-
T Consensus 265 ~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--------------------~i~~I~~~aF~~c~~L~~i~lp~~v- 322 (394)
T 4gt6_A 265 AYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--------------------RITELPESVFAGCISLKSIDIPEGI- 322 (394)
T ss_dssp SSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--------------------TCCEECTTTTTTCTTCCEEECCTTC-
T ss_pred ccccEEeccccc-ceecCcccccccccccccCCC--------------------cccccCceeecCCCCcCEEEeCCcc-
Confidence 555555554321 111122344455555555431 12222 3456778888888875431
Q ss_pred CCCCCcccccccCCcccccCC--CcCCCCCCCEEecCCCCCCCCCc-ccccCCCCCCcEEeCCCCCCeecCcccCCCCCC
Q 000943 824 PQSLPSPYLRRSSHNVALRLP--SLLGLCSLTKLDLSDCNLGEGAI-PSDIGNLCSLKELCLSKNKFILLPESISCLSKL 900 (1214)
Q Consensus 824 ~~~l~~~~l~~~~~~~~~~lp--~~~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L 900 (1214)
. .+. .|.++.+|+.+.|..+ +.. + ...+.++.+|+.+++.++... + ..+..+..|
T Consensus 323 ~-----------------~I~~~aF~~C~~L~~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L 380 (394)
T 4gt6_A 323 T-----------------QILDDAFAGCEQLERIAIPSS-VTK--IPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGL 380 (394)
T ss_dssp C-----------------EECTTTTTTCTTCCEEEECTT-CCB--CCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC
T ss_pred c-----------------EehHhHhhCCCCCCEEEECcc-cCE--EhHhHhhCCCCCCEEEECCceee-h-hhhhccCCC
Confidence 0 111 2777888999988654 322 4 346788899999999887432 1 345556666
Q ss_pred CEEeec
Q 000943 901 WIIDLE 906 (1214)
Q Consensus 901 ~~L~L~ 906 (1214)
+.|.+.
T Consensus 381 ~~i~i~ 386 (394)
T 4gt6_A 381 QNLPVA 386 (394)
T ss_dssp ------
T ss_pred CEEEeC
Confidence 666554
No 205
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.84 E-value=0.00027 Score=80.41 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHh----h-
Q 000943 197 DSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQ----L- 271 (1214)
Q Consensus 197 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~----l- 271 (1214)
++..+.+...+..+ .-.+.+.++|+.|+|||++|+.+++.+........ ...+.......+... +
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~---------~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH---------KSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT---------BCCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC---------CCCCCCHHHHHHhcCCCCCEE
Confidence 34455666665433 33467889999999999999999987743321100 000000000000000 0
Q ss_pred -hcCCC-CCcccccchHHHHHHHh-----CCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcc-hhhhc-
Q 000943 272 -LKLPD-SGIWDVYDGLKMIGTRL-----RYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEH-LLTTY- 340 (1214)
Q Consensus 272 -l~~~~-~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~- 340 (1214)
+.... ......++ +..+.+.+ .+++-++|+|+++.. +....|...+....++..+|++|.+.. +.+..
T Consensus 78 ~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 00000 00001111 11222222 246788999999853 344555554444456778787777653 33322
Q ss_pred CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 000943 341 GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSVL 395 (1214)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~l 395 (1214)
.....+++.+++.++..+++...+ ... .+.+..+++.++|.|..+..+
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~---~~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV---TMS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC---CCC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc---CCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 223589999999999999998775 111 245577899999999766544
No 206
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.84 E-value=0.0011 Score=76.85 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=30.5
Q ss_pred cCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecCc-ccCCCCCCCEEe
Q 000943 846 LLGLCSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLPE-SISCLSKLWIID 904 (1214)
Q Consensus 846 ~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~ 904 (1214)
+.++.+|+.+.+.++.+.. ++ ..+.++.+|+.+.|.. +++.++. .+.+|++|+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCC
T ss_pred cccccccccccccccccce--ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEE
Confidence 5556667777776665532 32 3455666777777643 2555542 344444444443
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00047 Score=78.66 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=102.3
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLL 268 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll 268 (1214)
...++|.+..++.+...+..+ ....+.++|+.|+||||+|+.+++.+... +...+.-.+. +...+...+. +.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~ir-~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVVR-NQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHHH-THH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHHH-HHH
Confidence 356789888888888887654 22338899999999999999999876432 1111111111 1111222111 111
Q ss_pred HhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCcc-hhhhc-Cccc
Q 000943 269 SQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDEH-LLTTY-GVDE 344 (1214)
Q Consensus 269 ~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~~-v~~~~-~~~~ 344 (1214)
........ ...+.+-++|+|+++.. +..+.+...+.......++|++|.... +.... ....
T Consensus 98 ~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 98 KDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11110000 01234678999999743 333444333333345677777775532 21111 1224
Q ss_pred eeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHH
Q 000943 345 VLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLAL 392 (1214)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 392 (1214)
.+++.+++.++..+.+...+-......+ .+..+.+++.++|.+--+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 7889999999999988776632222211 345677889999988643
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.74 E-value=6.8e-05 Score=74.03 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 192 DLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988886433334457899999999999999998744
No 209
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.0035 Score=72.50 Aligned_cols=255 Identities=10% Similarity=0.105 Sum_probs=126.6
Q ss_pred Ccccccccccccccccccccc-cccccCccEEecCCCcCCCCCC--CCCCCCCccEEeccCccCCCccCccccCCCCCcE
Q 000943 603 QPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAKNLISTP--DLTGLPNLEELDLRGCTRLRDIHPSLLLHKNLVS 679 (1214)
Q Consensus 603 ~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~~l~~~p--~~~~l~~L~~L~L~~c~~l~~lp~si~~l~~L~~ 679 (1214)
...+|+.+.++. .++.+++. |..|.+|+.++|..+ +..++ .|.++ +|+.+.+.. .+..++.......+|+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCccc
Confidence 345666666653 45555543 777788888887654 33333 36665 566666543 45556555444556777
Q ss_pred EecCCCCCCCccCccc-ccccccceecccccCCCCC-ccccCCCCcceEEEeeCccCcccC-------------cccCCC
Q 000943 680 VNLKDCTDLTTLPNKI-AMIHLRKLVLSGCSKLKKF-PEVVGSMECLLELFLDGTAIEELP-------------SSIQLL 744 (1214)
Q Consensus 680 L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-------------~~i~~l 744 (1214)
+.+.+ .+..+.... ...+|+.+.+... +..+ ...+..+.+++.+.+..+...... ..+...
T Consensus 118 i~lp~--~~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 118 FEFPG--ATTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EECCT--TCCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred ccCCC--ccccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 77654 233333222 2223444333321 1111 122344455555554433222111 111112
Q ss_pred CCCcEEecCCCCCCCcCCcccCCCCCCCEEEecCCCCCCccCCCCccccccCCccccCCcccccccCCCcEEeecCCCCC
Q 000943 745 NGLILLNLEKCTHLVGLPSTINDLTSLITLNLSGCSKSKNVGVESLEGLGSSRTVLRNPESSIFSMQNFEALSFLGWTLP 824 (1214)
Q Consensus 745 ~~L~~L~L~~c~~l~~lp~~l~~L~sL~~L~ls~c~~l~~~pl~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 824 (1214)
..+..+.+..... ......+....+|+.+.+ ..+...--...+..+.+|+.+.+..+--
T Consensus 194 ~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~-------------------~~~~~~i~~~~f~~~~~L~~i~lp~~v~- 252 (379)
T 4h09_A 194 KTGTEFTIPSTVK-TVTAYGFSYGKNLKKITI-------------------TSGVTTLGDGAFYGMKALDEIAIPKNVT- 252 (379)
T ss_dssp CCCSEEECCTTCC-EECTTTTTTCSSCSEEEC-------------------CTTCCEECTTTTTTCSSCCEEEECTTCC-
T ss_pred cccccccccccee-EEeecccccccccceeee-------------------ccceeEEccccccCCccceEEEcCCCcc-
Confidence 2222222211100 001111222333333332 2111111123455677777777654310
Q ss_pred CCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCCCCcc-cccCCCCCCcEEeCCCCCCeecC-cccCCCCCCCE
Q 000943 825 QSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGEGAIP-SDIGNLCSLKELCLSKNKFILLP-ESISCLSKLWI 902 (1214)
Q Consensus 825 ~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp-~~i~~l~~L~~ 902 (1214)
.+ .-..+.++.+|+.+.+..+ +.. ++ ..+.++++|+.+.+.++.++.++ ..+.+|.+|+.
T Consensus 253 -~I--------------~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 253 -SI--------------GSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp -EE--------------CTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred -Ee--------------Cccccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 00 0012666778888888654 322 33 35678899999999998898887 46788899999
Q ss_pred Eeec
Q 000943 903 IDLE 906 (1214)
Q Consensus 903 L~L~ 906 (1214)
+.|.
T Consensus 315 i~lp 318 (379)
T 4h09_A 315 VTLP 318 (379)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.63 E-value=0.00049 Score=82.01 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=100.9
Q ss_pred cCcccchhhHHHHHHHHhhh-----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDKE-----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..++|.+..++++.+.+... ....+-|.|+|++|.|||++|+++++.... .++..+........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~- 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL- 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSC-
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhh-
Confidence 56899999999998877532 234567899999999999999999886532 22222222211100
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH-------------HHHHHHhcccCC--CCCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL-------------KQLESLAGEREW--FGPG 324 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-------------~~l~~l~~~~~~--~~~g 324 (1214)
.+ .........+.....+++.+|+||+++.. .....|...+.. ....
T Consensus 279 ------------~g------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 ------------AG------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ------------TT------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ------------cc------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 00 00011122233334567889999999421 112222222211 1234
Q ss_pred cEEEEEeCCcch-hhhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCC-hHHHHHH
Q 000943 325 SRIIITSRDEHL-LTTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGL-PLALSVL 395 (1214)
Q Consensus 325 s~IIiTTR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLAl~~l 395 (1214)
.+||.||..... ...+ .....+.+...+.++..+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 566667765432 1121 23457899999999999999888643222111 1124466666664 4444444
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.61 E-value=0.00037 Score=83.04 Aligned_cols=146 Identities=12% Similarity=0.141 Sum_probs=82.1
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.+.+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------
Confidence 457999999999999998642 234567999999999999999999875432 1122211110
Q ss_pred HHHHHHhhhcCCCCCcccccch-HHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcch------
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDG-LKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHL------ 336 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v------ 336 (1214)
....+ ..... ...+...-..++.+|++| -..+....|.+.+. ....++|.+|.....
T Consensus 246 -----~~~~g-------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRG-------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccc-------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00000 01111 222333334578899999 22222233443332 224566666654431
Q ss_pred hhhc-CccceeecCCCCHHHHHHHHHHhh
Q 000943 337 LTTY-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
...+ .....+.++.++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1111 112368999999999999998765
No 212
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.60 E-value=0.00028 Score=79.28 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=38.7
Q ss_pred cCcccchhhHHHHHHHHhh------------hcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 191 KDLVGIDSRWKKLRFLIDK------------ELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+.++|.+..++.+...+.. .......+.++|++|+|||++|+++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999888877753 112345688999999999999999998773
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00077 Score=77.07 Aligned_cols=171 Identities=15% Similarity=0.200 Sum_probs=101.7
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
-+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.....+.....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 46788999999888776541 223457789999999999999999999775543 222222221110
Q ss_pred -C-HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCC
Q 000943 259 -G-LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREW 320 (1214)
Q Consensus 259 -~-~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1214)
+ .....++ .+...-...+++|++|+++... .+..++..++.
T Consensus 223 vGese~~vr~---------------------lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 223 IGEGSRMVRE---------------------LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp TTHHHHHHHH---------------------HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHH---------------------HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 0 0111111 1112224678999999998421 13333333332
Q ss_pred C--CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 321 F--GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 321 ~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
+ ..+..||.||.....+.. -..+..++++..+.++..++|..+..+.... ..+ ...+++.+.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 2 234456777766543322 2456789999999999999998876433222 112 345667777754
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.53 E-value=0.0012 Score=71.76 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=94.4
Q ss_pred cccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..++++|.+..++++.+++..- ....+-|.|+|++|.||||+|+++++.....| +.+ +.......
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~- 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEM- 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTS-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHH-
Confidence 3467999998888777654410 11234588999999999999999998764332 122 11111000
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccCC--
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL----------------KQLESLAGEREW-- 320 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~-- 320 (1214)
..+ .........+.......+.++++|+++.. ..+..+...+..
T Consensus 85 ------------~~~------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 85 ------------FVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ------------CCC------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred ------------hhh------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 000 00011112223333456789999998421 112233222211
Q ss_pred CCCCcEEEEEeCCcchh-hhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCC-ChHHHH
Q 000943 321 FGPGSRIIITSRDEHLL-TTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGG-LPLALS 393 (1214)
Q Consensus 321 ~~~gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLAl~ 393 (1214)
...+..||.||...... ... ..+..+.++..+.++-.+++..++.+.....+. ....++..+.| .+--|.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHH
Confidence 12345677777654322 111 234578888889888888887765322111111 12345566666 554333
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=4.1e-05 Score=77.34 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCCEEecCCCCCCCCCcccccCCCCCCcEEeCCCC-CCeec-CcccCCC----CCCCEEeecCCcCCCc-----ccCC
Q 000943 849 LCSLTKLDLSDCNLGEGAIPSDIGNLCSLKELCLSKN-KFILL-PESISCL----SKLWIIDLEECKRLQS-----LSQL 917 (1214)
Q Consensus 849 l~~L~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n-~l~~l-p~~i~~l----~~L~~L~L~~C~~L~~-----lp~l 917 (1214)
-..|+.|+|++|.+++..+. .+..+++|+.|+|++| .++.- -..+..+ ++|+.|+|++|++++. +..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34788999999988765553 4578888889998888 45511 1233333 4788899988887754 3444
Q ss_pred ccccceeeecCccccccc
Q 000943 918 PSNIEEVRLNGCASLGTL 935 (1214)
Q Consensus 918 p~sL~~L~l~~C~~L~~l 935 (1214)
++|++|++++|+.++..
T Consensus 139 -~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 -RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -TTCCEEEEESCTTCCCH
T ss_pred -CCCCEEECCCCCCCCch
Confidence 68888888888877653
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00049 Score=79.90 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=99.5
Q ss_pred cccCcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc
Q 000943 189 IFKDLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK 257 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 257 (1214)
...++.|.++..++|.+.+. .+-...+-|.++|++|.|||.||+++++.....| +..+..+....
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 34678999999988876543 1223467899999999999999999998775443 33322222111
Q ss_pred -CCH-HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccC
Q 000943 258 -GGL-ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGERE 319 (1214)
Q Consensus 258 -~~~-~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~ 319 (1214)
.+- ....+.++ ...-...+++|++|+++... .+..++..++
T Consensus 255 ~vGese~~ir~lF---------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 255 YIGEGAKLVRDAF---------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp CSSHHHHHHHHHH---------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHH---------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 010 11111111 11123468999999987320 1233444333
Q ss_pred CCC--CCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCC
Q 000943 320 WFG--PGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGL 388 (1214)
Q Consensus 320 ~~~--~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 388 (1214)
.+. .+-.||.||.....+.. + ..+..++++..+.++..++|..+..+.... .-+ ...+++.+.|.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 222 33456667766544322 2 345788999999999999998776433221 112 24466667664
No 217
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=3.2e-05 Score=78.15 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=63.4
Q ss_pred cCCCcEEeecCCCCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCC-CCCCCcccccCCC----CCCcEEeCCC
Q 000943 810 MQNFEALSFLGWTLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCN-LGEGAIPSDIGNL----CSLKELCLSK 884 (1214)
Q Consensus 810 l~~L~~L~l~~~~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~-l~~~~lp~~l~~l----~sL~~L~L~~ 884 (1214)
-.+|+.|++++|.+... .+..+.++++|+.|+|++|. +++..+ ..+..+ ++|++|+|++
T Consensus 60 ~~~L~~LDLs~~~Itd~---------------GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI---------------GFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCCEEEEEEESCCCCGG---------------GGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEES
T ss_pred CceEeEEeCcCCCccHH---------------HHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCC
Confidence 34688888888874422 23346778999999999996 554333 234443 4799999999
Q ss_pred C-CCe--ecCcccCCCCCCCEEeecCCcCCCcc
Q 000943 885 N-KFI--LLPESISCLSKLWIIDLEECKRLQSL 914 (1214)
Q Consensus 885 n-~l~--~lp~~i~~l~~L~~L~L~~C~~L~~l 914 (1214)
| +++ .+ ..+.++++|++|+|++|+.++..
T Consensus 124 C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 124 CGNVTDKGI-IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CTTCCHHHH-HHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCcCCHHHH-HHHhcCCCCCEEECCCCCCCCch
Confidence 9 576 23 24667999999999999988763
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.0004 Score=71.13 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+.++|+|++|+||||||++++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999775
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0019 Score=75.01 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=101.1
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc-
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK- 257 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~- 257 (1214)
.+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.....+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 46788999999888776641 223457899999999999999999999775443 33222222111
Q ss_pred CCH-HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCC
Q 000943 258 GGL-ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREW 320 (1214)
Q Consensus 258 ~~~-~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1214)
.+- .... .......-...+++|++|+++... .+..++..++.
T Consensus 256 ~Gese~~i---------------------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 256 IGESARII---------------------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSHHHHHH---------------------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred chHHHHHH---------------------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 000 0111 111122224678999999997320 12233333321
Q ss_pred C--CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 321 F--GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 321 ~--~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
+ ..+..||.||-....+.. + ..+..++++..+.++..++|..+..+.... ..+ ...+++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 1 234567778766543322 1 245688999999999999998776443222 112 245666777754
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00085 Score=75.33 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=40.0
Q ss_pred cCcccchhhHHHHHHHHhhhc-------CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 191 KDLVGIDSRWKKLRFLIDKEL-------NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468899999998888876431 12357999999999999999999987644
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.44 E-value=0.00023 Score=74.42 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=39.5
Q ss_pred ccCcccchhh----HHHHHHHHhhhcCC--cEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 190 FKDLVGIDSR----WKKLRFLIDKELNG--VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 190 ~~~~vGr~~~----l~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.++|++.+.. ++.+..++...... .+.+.|+|++|+|||+||+++++.........+++.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567765533 34444444432221 267889999999999999999998766544455554
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0029 Score=73.23 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=99.2
Q ss_pred cCcccchhhHHHHHHHHh-----------hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc-C
Q 000943 191 KDLVGIDSRWKKLRFLID-----------KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK-G 258 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~-~ 258 (1214)
.++.|.++.+++|.+.+. .+-...+-|.++|++|.|||.||+++++.....| +.....+.... .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 568899999888877643 1224567899999999999999999999776543 22222221111 0
Q ss_pred CH-HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCC
Q 000943 259 GL-ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWF 321 (1214)
Q Consensus 259 ~~-~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1214)
+- ....+ ......-...+++|++|+++... .+..++..+..+
T Consensus 285 Gesek~ir---------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 285 GEGARMVR---------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SHHHHHHH---------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHH---------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 00 01111 11222224678999999998321 122233222222
Q ss_pred --CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 322 --GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 322 --~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
..+..||.||-....+.. -..+..++++..+.++..++|..++.+.... .-+ ...+++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 234455667755433221 1456789999999999999998876433222 112 244666777653
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.41 E-value=0.0019 Score=76.29 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred ccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC-
Q 000943 190 FKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG- 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~- 258 (1214)
..+++|.++.++++.++...- ..-.+-|.|+|++|.|||+||++++.+....| +..+..+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 467999999888877765421 11234588999999999999999998764332 222222211110
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccCCC-
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL----------------KQLESLAGEREWF- 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~- 321 (1214)
+. ........+.......+.+|+||+++.. ..+..+...+..+
T Consensus 91 g~--------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 91 GV--------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp TH--------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred cc--------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 00 0011122233344567899999999642 1133333322211
Q ss_pred -CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 322 -GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 322 -~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
..+..||.||.....+.. . ..+..+.++..+.++-.+++..++.......+. ....+++.+.|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 245677777776644321 1 234588899999988888887776432211111 1334677787876
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.0012 Score=84.12 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=88.8
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc------cCccEEEEeehhhhccCCHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE------FEGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~~~~~~~~~ 262 (1214)
..+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++++... ....++..+....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH--------
Confidence 3467999999999999988643 34457899999999999999999876432 1222332211111
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCH----------HHHHHHhcccCCCCCCcEEEEEe
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDL----------KQLESLAGEREWFGPGSRIIITS 331 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IIiTT 331 (1214)
... .............+.+.+ ..++.+|++|+++.. .+...++..... ..+.++|.+|
T Consensus 254 ---------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 254 ---------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp ----------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred ---------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 000 000111222223333333 346789999999854 122233322221 2345666666
Q ss_pred CCcchhhh------c-CccceeecCCCCHHHHHHHHHHhh
Q 000943 332 RDEHLLTT------Y-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 332 R~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
........ + .....+.++.++.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 54321111 1 111368899999999998887654
No 225
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.40 E-value=0.00033 Score=90.17 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=81.9
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHH
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLIS 262 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~ 262 (1214)
..+.+|||+.+++++...+... ..+.+.++|++|+|||++|+.+++++.... ...++..+........
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~---- 241 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA---- 241 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC----
Confidence 3467999999999999988643 234578999999999999999999774321 2223332221110000
Q ss_pred HHHHHHHhhhcCCCCCcccccchHHHHHHHh-C-CCcEEEEEeCCCCHH---------H-HHHHhcccCCCCCCcEEEEE
Q 000943 263 LQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-R-YRRVLLIIDDAFDLK---------Q-LESLAGEREWFGPGSRIIIT 330 (1214)
Q Consensus 263 l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~-~kr~LlVLDdv~~~~---------~-l~~l~~~~~~~~~gs~IIiT 330 (1214)
....+.......+.+.+ . +++.+|++|+++... + ...+...+. ..+..+|.+
T Consensus 242 --------------~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 242 --------------KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 00001111222222222 2 468999999998643 1 111221111 123456655
Q ss_pred eCCcch-----hhhc-CccceeecCCCCHHHHHHHHHHh
Q 000943 331 SRDEHL-----LTTY-GVDEVLKLKELHDDEALQLFCKK 363 (1214)
Q Consensus 331 TR~~~v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (1214)
|..... ...+ .....+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 543321 1111 11235889999999999998654
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.40 E-value=0.00067 Score=74.34 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=35.6
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+.++|.+..+.++.+.+.........|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5689999999888877764323335678999999999999999987543
No 227
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0025 Score=73.08 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=99.3
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc-
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK- 257 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~- 257 (1214)
..++.|.++..++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +..+..+....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 46688999999888776541 223457799999999999999999999776543 22222222111
Q ss_pred CCH-HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccCC
Q 000943 258 GGL-ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL----------------KQLESLAGEREW 320 (1214)
Q Consensus 258 ~~~-~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~ 320 (1214)
.+- ....+. .+...-...+++|++|+++.. ..+..++...+.
T Consensus 257 vGesek~ir~---------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 257 LGDGPRLCRQ---------------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSHHHHHHHH---------------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHH---------------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 000 111111 111222457899999998732 012233332222
Q ss_pred C--CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 321 F--GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 321 ~--~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
+ ..+..||.||-....+.. + ..+..+.++..+.++..++|..+..+.... ..+ ...+++.+.|.-
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2 234566777766544332 2 345678999999999999998876433221 112 244566666653
No 228
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=0.00092 Score=74.56 Aligned_cols=146 Identities=17% Similarity=0.119 Sum_probs=87.0
Q ss_pred cchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh---cccCccEEEEeehhhhccCCHHHHHHHHHHhh
Q 000943 195 GIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA---HEFEGSSFLANVREISEKGGLISLQKQLLSQL 271 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 271 (1214)
|-++.++.+...+..+. .+...++|++|.||||+|+.+++... ........+. .. ....++..+ +++...+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~--~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE--GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS--SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC--cCCCCHHHH-HHHHHHH
Confidence 34556677777776543 67889999999999999999987531 1122222222 10 001222222 2233321
Q ss_pred hcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCCCCCCcEEEEEeCCc-chhhhcCccceeec
Q 000943 272 LKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREWFGPGSRIIITSRDE-HLLTTYGVDEVLKL 348 (1214)
Q Consensus 272 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IIiTTR~~-~v~~~~~~~~~~~l 348 (1214)
...+ ..+++-++|+|+++.. +....|...+....+.+.+|++|.++ .+.+..... .+++
T Consensus 75 ~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 75 NYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp TSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred hhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 1100 0245678999999853 44555555444445677888777554 444444444 8999
Q ss_pred CCCCHHHHHHHHHHhh
Q 000943 349 KELHDDEALQLFCKKA 364 (1214)
Q Consensus 349 ~~L~~~ea~~Lf~~~a 364 (1214)
.++++++..+.+...+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998776
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.32 E-value=0.00024 Score=78.11 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=85.4
Q ss_pred ccCcccchhhHHHHHHHHhh----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
...++|.+..++++.+.+.. +....+-+.|+|++|+|||++|+++++.....|-. + +......
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~--- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIE--- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTT---
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHH---
Confidence 46799999998888876651 11123347899999999999999999876543321 1 1111000
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHHH-----------------HHHHhcccCCCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLKQ-----------------LESLAGEREWFG 322 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-----------------l~~l~~~~~~~~ 322 (1214)
...+.. ........ ......++.+|+||+++.... +..+...+....
T Consensus 83 ----------~~~~~~---~~~~~~~~---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 ----------MFVGLG---ASRVRDLF---ETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ----------SCSSSC---SSSSSTTH---HHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ----------hhcchH---HHHHHHHH---HHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 001110 11111222 222234678999999975311 222333322211
Q ss_pred ---CCcEEEEEeCCcchhh-hc----CccceeecCCCCHHHHHHHHHHhh
Q 000943 323 ---PGSRIIITSRDEHLLT-TY----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 323 ---~gs~IIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
....||.||.....+. .. .....+.++..+.++..+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245677776553222 11 233568888899999888887765
No 230
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.28 E-value=0.00014 Score=71.50 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=34.3
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
-.++|++..++++.+.+..-.....-|.|+|.+|.|||++|+++++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35799999999988887643233345789999999999999998664
No 231
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0024 Score=74.15 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=94.3
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc-
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK- 257 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~- 257 (1214)
..++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||+++++.....| +..+..+....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 36788999999888776641 223457799999999999999999998775443 32222221111
Q ss_pred CCH-HHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCC
Q 000943 258 GGL-ISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREW 320 (1214)
Q Consensus 258 ~~~-~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~ 320 (1214)
.+- ....++ .+...-...+++|++|+++... .+..++..++.
T Consensus 247 ~Ge~e~~ir~---------------------lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 247 LGEGPRMVRD---------------------VFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp CSHHHHHHHH---------------------HHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHH---------------------HHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 000 111111 1122224578999999986210 12333332221
Q ss_pred --CCCCcEEEEEeCCcchhhh-----cCccceeecCCC-CHHHHHHHHHHhhhcCCCC-chHHHHHHHHHHHHhCCCh
Q 000943 321 --FGPGSRIIITSRDEHLLTT-----YGVDEVLKLKEL-HDDEALQLFCKKAFKTHQP-WKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 321 --~~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 389 (1214)
...+..||.||.....+.. ...+..++++.+ +.++..++|..+..+.... ..+ ...+++.+.|.-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 1345567777765443221 134467788655 5556666776665332221 112 244666666653
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.23 E-value=0.002 Score=71.96 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=38.9
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999988887543444567899999999999999998854
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.20 E-value=0.0017 Score=82.52 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=83.0
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc------CccEEEEeehhhhccCCHHHH
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF------EGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l 263 (1214)
.+.+|||+.+++++...+... ...-+.++|++|+|||++|+.+++.+.... ...++..+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 457999999999999988643 234478999999999999999999874321 112221111
Q ss_pred HHHHHHhhhcCCCCCcccccch-HHHHHHHhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcch------
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDG-LKMIGTRLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHL------ 336 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v------ 336 (1214)
..... ...... ...+......++.+|++| ...+....+.+.+. ....++|.||.....
T Consensus 245 ----g~~~~-------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----GTKYR-------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----ccccc-------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000 011111 223333334678899999 22222333444332 234566666655431
Q ss_pred hhhc-CccceeecCCCCHHHHHHHHHHhh
Q 000943 337 LTTY-GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
...+ .....+.++.++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1111 111468999999999999998654
No 234
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.18 E-value=0.00048 Score=63.41 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=52.9
Q ss_pred ccccEEEccccccccccHHHHHHHHHHhCCCceEecCccccCCCccchHHHHHhhhccEEEEEecCCcccchhhHHHHHH
Q 000943 12 WKYDVFLSFRGEDTRKNFTDHLCAALDQKGIIVFRDDKELERGKSISPGLFKAIEESRISIIVFSRNYAHSTWCLDELVK 91 (1214)
Q Consensus 12 ~~~dvFiS~~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~ 91 (1214)
.+|.+||||+.+|. .+.|...|.+.|+.. .| +.|+.|+++||+.++.-.+|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 47999999999983 444444444556632 22 78899999999999999999999999865
Q ss_pred HHHHHhcCCCceEEEEEE
Q 000943 92 IVELKSTNGQQQVIFPIF 109 (1214)
Q Consensus 92 ~~~~~~~~~~~~~v~Pi~ 109 (1214)
+. +.|+ +|+-|.
T Consensus 63 A~----~~gk--pIigV~ 74 (111)
T 1eiw_A 63 AR----KSSK--PIITVR 74 (111)
T ss_dssp HT----TTTC--CEEEEC
T ss_pred HH----HcCC--CEEEEE
Confidence 55 4555 566554
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.18 E-value=0.0032 Score=74.76 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=39.1
Q ss_pred ccCcccchhhHHHHHHHHh---hhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 190 FKDLVGIDSRWKKLRFLID---KELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+.++|.+..++.+..++. .+....+-+.++|++|.|||++|+++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4789999998887666554 2222346788999999999999999998764
No 236
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.04 E-value=4.4e-05 Score=78.90 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.3
Q ss_pred CCCCCCEEEecCC
Q 000943 767 DLTSLITLNLSGC 779 (1214)
Q Consensus 767 ~L~sL~~L~ls~c 779 (1214)
..++|++|++++|
T Consensus 34 ~~~~L~~L~L~~n 46 (185)
T 1io0_A 34 NDPDLEEVNLNNI 46 (185)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCCCCEEEecCC
Confidence 3444555555444
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.96 E-value=0.011 Score=64.16 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=81.8
Q ss_pred cccCcccchhhHHHHHHHHhhh----------cCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE----------LNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..++++|.+....++..+...- -.-.+-+.|+|++|.||||||+.++..... ..+.+. ....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~---- 85 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDF---- 85 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHH----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHH----
Confidence 3467889887777666554310 011123899999999999999999986642 122222 1111
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHh-CCCcEEEEEeCCCCHH----------------HHHHHhcccCCC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRL-RYRRVLLIIDDAFDLK----------------QLESLAGEREWF 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~ 321 (1214)
... . .......+..+.+.. ...+.++++|+++... .+..+...+...
T Consensus 86 ---------~~~-~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 86 ---------VEM-F------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp ---------HHS-C------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred ---------HHH-H------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 000 0 000001112222222 2456899999985321 122332222111
Q ss_pred --CCCcEEEEEeCCcchhhhc-----CccceeecCCCCHHHHHHHHHHhh
Q 000943 322 --GPGSRIIITSRDEHLLTTY-----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 322 --~~gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
.....++.||..+..+..- ..+..++++..+.++-.+++..++
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 1233455666665543321 345678899999998888887765
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.93 E-value=0.0058 Score=67.82 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...+.+.++|++|+|||+||+++++....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578889999999999999999998743
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.016 Score=70.00 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=37.3
Q ss_pred cCcccchhhHHHHHHHHhhh----cCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 191 KDLVGIDSRWKKLRFLIDKE----LNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++|.+.-.+.+.+.+... ......+.++|++|+||||||+.++......
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 34788887777765544311 1235689999999999999999999877443
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.88 E-value=0.0037 Score=79.37 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=84.0
Q ss_pred cCcccchhhHHHHHHHHhhhc-------CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKEL-------NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISL 263 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l 263 (1214)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 568999999988888876322 1123689999999999999999998764332222333 333322211110
Q ss_pred HHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCH--HHHHHHhcccCC-----------CCCCcEEEEE
Q 000943 264 QKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDL--KQLESLAGEREW-----------FGPGSRIIIT 330 (1214)
Q Consensus 264 ~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gs~IIiT 330 (1214)
.......++. ...-+|+||+++.. +....|...+.. .....+||+|
T Consensus 568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 0011122221 23458999999853 223333322211 1235688888
Q ss_pred eCCcc-------------hhhh--cCccceeecCCCCHHHHHHHHHHhh
Q 000943 331 SRDEH-------------LLTT--YGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 331 TR~~~-------------v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
|.... +.+. ...+.++.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 87311 0010 1223578899999988888776654
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.85 E-value=0.022 Score=62.58 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=83.3
Q ss_pred ccccCcccchhhHHHHHHHHhhhc----------CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhcc
Q 000943 188 DIFKDLVGIDSRWKKLRFLIDKEL----------NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEK 257 (1214)
Q Consensus 188 ~~~~~~vGr~~~l~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~ 257 (1214)
...++++|.+...+++..+...-. .-.+-+.|+|++|.||||||+.++..... ..+.+. .....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~-- 110 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV-- 110 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH--
Confidence 345679999888777766543110 11123899999999999999999986642 222222 11110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcccccchHHH-HHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccCC
Q 000943 258 GGLISLQKQLLSQLLKLPDSGIWDVYDGLKM-IGTRLRYRRVLLIIDDAFDL----------------KQLESLAGEREW 320 (1214)
Q Consensus 258 ~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~ 320 (1214)
.... ......+.. ++..-...+.++|+|+++.. ..+..+...+..
T Consensus 111 -----------~~~~-------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 111 -----------EMFV-------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp -----------HSTT-------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred -----------HHHh-------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 0000 000011111 22222345789999998522 112233322221
Q ss_pred C--CCCcEEEEEeCCcchhhh-----cCccceeecCCCCHHHHHHHHHHhh
Q 000943 321 F--GPGSRIIITSRDEHLLTT-----YGVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 321 ~--~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
. .....++.||..+.++.. ...+..++++..+.++-.+++..++
T Consensus 173 g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 122345556666544332 1345678999999999888887765
No 242
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00094 Score=66.00 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....++|+|+.|.|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468899999999999999999987754
No 243
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.82 E-value=0.00031 Score=72.44 Aligned_cols=14 Identities=14% Similarity=0.123 Sum_probs=7.3
Q ss_pred CCCCCCEEEecCCC
Q 000943 767 DLTSLITLNLSGCS 780 (1214)
Q Consensus 767 ~L~sL~~L~ls~c~ 780 (1214)
..++|++|++++|.
T Consensus 149 ~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 149 KNTTLLKFGYHFTQ 162 (185)
T ss_dssp HCSSCCEEECCCSS
T ss_pred hCCCcCEEeccCCC
Confidence 34555555555554
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.80 E-value=0.0068 Score=71.95 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=94.1
Q ss_pred cccCcccchhhHHHHHHHHhhh-c---------CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKE-L---------NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~-~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
..++++|.++.++++.++...- . .-.+-|.|+|++|.|||+||++++..... .++..+........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHhh
Confidence 4567999998887777665411 0 11234899999999999999999986642 22222222111100
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC----CCcEEEEEeCCCCH----------------HHHHHHhccc
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR----YRRVLLIIDDAFDL----------------KQLESLAGER 318 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~----~kr~LlVLDdv~~~----------------~~l~~l~~~~ 318 (1214)
.......+...++ ..+.++++|+++.. ..+..+...+
T Consensus 105 -----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 105 -----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp -----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred -----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 0011122222222 24579999999532 1123343332
Q ss_pred CCC--CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 319 EWF--GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 319 ~~~--~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
..+ ..+..|+.||..+..+.. + ..+..+.++..+.++-.+++..++-+.....+. ....++..+.|+.
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 211 234456666666654332 1 234688999999999999988776322211111 1334666666665
No 245
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.77 E-value=0.00043 Score=75.24 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=40.7
Q ss_pred cccccceecccccCCC--CCccccCCCCcceEEEeeCccCcccCcccCCCC--CCcEEecCCCCCCCcCCc-------cc
Q 000943 697 MIHLRKLVLSGCSKLK--KFPEVVGSMECLLELFLDGTAIEELPSSIQLLN--GLILLNLEKCTHLVGLPS-------TI 765 (1214)
Q Consensus 697 l~~L~~L~Ls~c~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~-------~l 765 (1214)
+++|+.|+|++|.... .+|..++.+++|+.|+|++|.|..+. .+..+. +|+.|+|++|+....+|. .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3344444444433222 23344455666666666666666542 233333 677777777666554442 24
Q ss_pred CCCCCCCEEE
Q 000943 766 NDLTSLITLN 775 (1214)
Q Consensus 766 ~~L~sL~~L~ 775 (1214)
..+++|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4566666665
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.75 E-value=0.0042 Score=77.58 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=97.9
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.+++.|.++.+++|.+.+.. +-...+-|.++|++|.|||+||+++++..... ++..+..+.....
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc
Confidence 35688999999988887641 11235779999999999999999998765433 3333222211100
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhCCCcEEEEEeCCCCHH-------------HHHHHhcccCCC--CC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLRYRRVLLIIDDAFDLK-------------QLESLAGEREWF--GP 323 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~ 323 (1214)
.. .........+.......+.+|++|+++..- .+..+....... ..
T Consensus 279 -----------------~g--ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 -----------------AG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -----------------TT--HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -----------------ch--HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 00 001111122233345678999999987321 123333222211 12
Q ss_pred CcEEEEEeCCcchh-hhc----CccceeecCCCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCCh
Q 000943 324 GSRIIITSRDEHLL-TTY----GVDEVLKLKELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLP 389 (1214)
Q Consensus 324 gs~IIiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 389 (1214)
+..||.||.....+ ..+ ..++.++++..+.++-.++|..+..+.....+ .....+++.+.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 34455566554322 222 34568999999999999999877633221111 01344666776654
No 247
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.71 E-value=0.0011 Score=72.04 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=8.6
Q ss_pred ccCCCcEEeecCCCCC
Q 000943 809 SMQNFEALSFLGWTLP 824 (1214)
Q Consensus 809 ~l~~L~~L~l~~~~~~ 824 (1214)
.+++|+.|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~ 183 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLY 183 (267)
T ss_dssp HCTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCC
Confidence 4555555555555543
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.67 E-value=0.016 Score=63.55 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=81.0
Q ss_pred cCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
.++.|.++..++|.+.+.. +-.-.+-++++|++|.||||||++++...... .+.+. ..+.... .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~-~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM-Y 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS-T
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh-h
Confidence 4567777777666654320 00111239999999999999999998865432 22222 1111110 0
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHHHHH-hCCCcEEEEEeCCCCHH-------------HHHHHhcccCC--CCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR-LRYRRVLLIIDDAFDLK-------------QLESLAGEREW--FGP 323 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~-------------~l~~l~~~~~~--~~~ 323 (1214)
.... ...+..+.+. -...+.++++|+++... ....+...+.. ...
T Consensus 85 ~~~~-------------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 85 VGES-------------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp THHH-------------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hhHH-------------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000 0111112221 13467899999987421 11222222211 123
Q ss_pred CcEEEEEeCCcchhhhc-----CccceeecCCCCHHHHHHHHHHhh
Q 000943 324 GSRIIITSRDEHLLTTY-----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 324 gs~IIiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
..-++.+|..+.++... ..+..+.++..+.++..+++..+.
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45566777776654332 345788899999999999998765
No 249
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.66 E-value=0.016 Score=73.44 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=38.5
Q ss_pred cCcccchhhHHHHHHHHhhhc-------CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKEL-------NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999988887776321 123478999999999999999999877
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.50 E-value=0.0048 Score=65.11 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|..++..+-....+++|.|.+|+||||||..++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432223456899999999999999999887 2 223455554
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.20 E-value=0.021 Score=72.36 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=85.5
Q ss_pred ccCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccC
Q 000943 190 FKDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKG 258 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~ 258 (1214)
.+.++|.+..+++|.+++.. +-.....|.|+|++|.||||||++++......| +..+..+.....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhhh
Confidence 46799999999999888763 123346799999999999999999988654332 222211111000
Q ss_pred CHHHHHHHHHHhhhcCCCCCcccccch-HHHHHHHhCCCcEEEEEeCCCCH----------------HHHHHHhcccCCC
Q 000943 259 GLISLQKQLLSQLLKLPDSGIWDVYDG-LKMIGTRLRYRRVLLIIDDAFDL----------------KQLESLAGEREWF 321 (1214)
Q Consensus 259 ~~~~l~~~ll~~ll~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~----------------~~l~~l~~~~~~~ 321 (1214)
....... ...+.......+.++++|+++.. .++-.+..... .
T Consensus 279 --------------------~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~ 337 (806)
T 1ypw_A 279 --------------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-Q 337 (806)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-T
T ss_pred --------------------hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-c
Confidence 0000111 11222223346789999998521 11222222221 1
Q ss_pred CCCcEEEEEeCCcchhhh-c----CccceeecCCCCHHHHHHHHHHhh
Q 000943 322 GPGSRIIITSRDEHLLTT-Y----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 322 ~~gs~IIiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
..+..+|.||.....+.. + .....+.+...+.++..+++...+
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 234556666655432221 1 223567888889999888887765
No 252
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.16 E-value=0.034 Score=64.08 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+.++|++|+|||++|+++++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 253
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.86 E-value=0.015 Score=57.25 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=74.4
Q ss_pred ccEEEcc--------------ccccccccHHHHHHHHHHhCCCceEecCccc----cC----CCccchHHHHHhhhccEE
Q 000943 14 YDVFLSF--------------RGEDTRKNFTDHLCAALDQKGIIVFRDDKEL----ER----GKSISPGLFKAIEESRIS 71 (1214)
Q Consensus 14 ~dvFiS~--------------~~~d~~~~f~~~l~~~L~~~g~~~~~d~~~~----~~----g~~~~~~~~~ai~~s~~~ 71 (1214)
=-+|++| +.+| ....+.|...-....+-.|.|..+. .. -+.|.+.|.+.|..|+.+
T Consensus 6 n~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~v 83 (189)
T 3hyn_A 6 NANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNI 83 (189)
T ss_dssp CEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEE
T ss_pred cCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcE
Confidence 3478888 4555 4667778777777777778886544 22 346889999999999999
Q ss_pred EEEecCCcccchhhHHHHHHHHHHHhcCCCceEEEEEEEeec-ccccccccch
Q 000943 72 IIVFSRNYAHSTWCLDELVKIVELKSTNGQQQVIFPIFYDVE-PTVVRKQTAS 123 (1214)
Q Consensus 72 i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~~~v~Pi~~~v~-p~~vr~q~g~ 123 (1214)
|+++|++...|.|...|+..++. +.|. +||-|.-+-+ .+++++-.|+
T Consensus 84 IllIs~~T~~s~~v~wEIe~Ai~---~~~~--PII~Vy~~~~~~~~i~~~~g~ 131 (189)
T 3hyn_A 84 ILFLSSITANSRALREEMNYGIG---TKGL--PVIVIYPDYDKKSDIVDSNGN 131 (189)
T ss_dssp EEECCTTCCCCHHHHHHHHHHTT---TTCC--CEEEEETTCCSGGGTBCTTSC
T ss_pred EEEEecCccccchhHHHHHHHHH---hcCC--cEEEEECCccccchhhhcccc
Confidence 99999999999999999887772 3444 7887773322 3355543444
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.76 E-value=0.032 Score=63.10 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|. .+-..-+++.|.|++|+||||||..++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45556664 33344689999999999999999999886654433456664
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.72 E-value=0.031 Score=62.26 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=37.3
Q ss_pred cCcccch----hhHHHHHHHHhhhcC-CcEEEEEEecCCchHHHHHHHHHHHHh-cccCccEEEE
Q 000943 191 KDLVGID----SRWKKLRFLIDKELN-GVRMIGICGMGGIGKTTLARVVYDLIA-HEFEGSSFLA 249 (1214)
Q Consensus 191 ~~~vGr~----~~l~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 249 (1214)
++|++.+ ..++.+.+++..... ....+.|+|++|+|||+||.++++... .....+.++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4565433 233344455543222 246788999999999999999999776 5433444444
No 256
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.68 E-value=0.0096 Score=65.71 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=43.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEe-ehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLAN-VREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
..+++.|+|++|+|||+||.+++.. .-..+.|+.. ..+ . +.... .+.+.....+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE---~--------------v~~~~---~~le~~l~~i~~ 178 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGE---P--------------LSGYN---TDFNVFVDDIAR 178 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSC---S--------------STTCB---CCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchh---h--------------hhhhh---cCHHHHHHHHHH
Confidence 3467889999999999999999876 2223455542 011 0 00000 233344445555
Q ss_pred HhCCCcEEEEEeCCCCH
Q 000943 292 RLRYRRVLLIIDDAFDL 308 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~ 308 (1214)
.+...+ +||+|++...
T Consensus 179 ~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHCS-EEEEECCTTT
T ss_pred HHhhCC-EEEEeccccc
Confidence 565556 9999998753
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.041 Score=70.57 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=39.3
Q ss_pred cCcccchhhHHHHHHHHhhhc-------CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 191 KDLVGIDSRWKKLRFLIDKEL-------NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+++++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999988888776321 12357899999999999999999987643
No 258
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.34 E-value=0.025 Score=60.05 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=26.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
.-.+++|.|.+|.|||||++.++......-..+.|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 346899999999999999999987554332334444
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.17 E-value=0.15 Score=59.20 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998877654
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.15 E-value=0.16 Score=56.23 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999877544 3344443
No 261
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.98 E-value=0.22 Score=54.93 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999998876544
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.97 E-value=0.047 Score=57.45 Aligned_cols=111 Identities=14% Similarity=-0.050 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCC--cccccchHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSG--IWDVYDGLKMIG 290 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~--~~~~~~~~~~l~ 290 (1214)
...++.|+|..|+||||+|..++.+...+-..+.++..... .. +. .++++. ++..... .....+..+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d--~r-~~----~~i~sr-lG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID--TR-SI----RNIQSR-TGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--GG-GC----SSCCCC-CCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC--ch-HH----HHHHHh-cCCCccccccCCHHHHHHHHH
Confidence 34788999999999999999998887665444444431111 00 10 111112 1111111 111122233333
Q ss_pred HHhCCC-cEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 291 TRLRYR-RVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 291 ~~L~~k-r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
+.+.+. .-+||+|.++. .++++.+.... ..|-.||+|.++.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEeccc
Confidence 333333 45999999874 34544443211 1378899999864
No 263
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.88 E-value=0.039 Score=56.33 Aligned_cols=116 Identities=16% Similarity=0.033 Sum_probs=60.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCC-CCc---------ccccc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPD-SGI---------WDVYD 284 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~-~~~---------~~~~~ 284 (1214)
..|.|++-.|.||||.|...+-+...+--.+.++.-.... ...+-..+...+--.+..... -.. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566777777999999998887776654455555422210 112222233222000000000 000 01122
Q ss_pred hHHHHHHHhCC-CcEEEEEeCCC--------CHHHHHHHhcccCCCCCCcEEEEEeCCc
Q 000943 285 GLKMIGTRLRY-RRVLLIIDDAF--------DLKQLESLAGEREWFGPGSRIIITSRDE 334 (1214)
Q Consensus 285 ~~~~l~~~L~~-kr~LlVLDdv~--------~~~~l~~l~~~~~~~~~gs~IIiTTR~~ 334 (1214)
....+++.+.+ +-=|||||++. +.+++-.+.... .....||||+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 33445555554 44599999884 334444443332 4677899999985
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.87 E-value=0.079 Score=59.21 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..++|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46799999999999999999998877644 3444443
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.83 E-value=0.12 Score=51.86 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVV 234 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v 234 (1214)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 266
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.81 E-value=0.34 Score=54.75 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=98.8
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh-cccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcc
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA-HEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIW 280 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~ 280 (1214)
++...+. + .-.++..++|..|.||++.|+++.+.+. ..|+....+. + ....++.++...+-.
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~----------- 70 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA----------- 70 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH-----------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC-----------
Confidence 3444444 2 3467889999999999999999988654 3343221111 1 111223222222110
Q ss_pred cccchHHHHHHHhCCCcEEEEEeCCCC-H--HHHHHHhcccCCCCCCcEEEEEeCC-------cchhhhc-CccceeecC
Q 000943 281 DVYDGLKMIGTRLRYRRVLLIIDDAFD-L--KQLESLAGEREWFGPGSRIIITSRD-------EHLLTTY-GVDEVLKLK 349 (1214)
Q Consensus 281 ~~~~~~~~l~~~L~~kr~LlVLDdv~~-~--~~l~~l~~~~~~~~~gs~IIiTTR~-------~~v~~~~-~~~~~~~l~ 349 (1214)
.-+.+++-++|+|+++. . +..+.|...+....+++.+|++|.. ..+.+.. .....++..
T Consensus 71 ----------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 71 ----------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp ----------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ----------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 11345677889999875 3 4455555544434567888777643 2333332 234688999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 000943 350 ELHDDEALQLFCKKAFKTHQPWKEYEQLSKYVVKYSGGLPLALSV 394 (1214)
Q Consensus 350 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 394 (1214)
+++.++..+.+...+-..... -..+.+..+++.++|...++..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLE--LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhchHHHHHHH
Confidence 999999998888876433321 1245677899999998877654
No 267
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.81 E-value=0.059 Score=61.07 Aligned_cols=49 Identities=24% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 201 KKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44555554 33334578999999999999999999876654434556665
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.67 E-value=0.22 Score=55.64 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=42.5
Q ss_pred hHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 199 RWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 199 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
-+..|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+. -.....++...++..
T Consensus 54 G~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 54 GFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp SCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred ChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 344555555 33345578999999999999999998875544334555554 234556666666554
No 269
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.62 E-value=0.039 Score=58.41 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+..++..+-..-.+++|+|+.|.|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222345799999999999999999998744
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.38 E-value=0.056 Score=59.40 Aligned_cols=48 Identities=6% Similarity=0.110 Sum_probs=32.5
Q ss_pred HHHHHHHh----hhcCCcEEEEEEecCCchHHHHHHHHHHHHhccc--CccEEEE
Q 000943 201 KKLRFLID----KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF--EGSSFLA 249 (1214)
Q Consensus 201 ~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 249 (1214)
..|..+|. .+-..- ++-|.|++|+||||||.+++......+ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34555665 222223 689999999999999998887665542 3456654
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.35 E-value=0.082 Score=56.67 Aligned_cols=37 Identities=27% Similarity=0.154 Sum_probs=26.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh-cccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA-HEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 249 (1214)
.-.+++|.|+.|.|||||++.++.... ..-...+++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457899999999999999999884322 2223444443
No 272
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.29 E-value=0.076 Score=60.23 Aligned_cols=50 Identities=26% Similarity=0.243 Sum_probs=35.1
Q ss_pred HHHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 200 WKKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 200 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...|..+|. .+-...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345555554 23334578999999999999999998876654444566665
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.26 E-value=0.11 Score=58.88 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|..+|..+-....++.|+|.+|+||||||..++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455554333456899999999999999999988754
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.20 E-value=0.26 Score=57.11 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++|+++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998877554
No 275
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.11 E-value=0.065 Score=57.19 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|..+|..+-..-.+++|+|++|+||||||+.++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4444554332345789999999999999999998753
No 276
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.10 E-value=0.059 Score=61.13 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcccCccEE-EEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSF-LANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTR 292 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~ 292 (1214)
..+++|.|+.|.||||+++.+...+.......++ +.+..+....... ........ ..........+.+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~-~~~~~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREV-HRDTLGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEB-TTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeee-ccccCCHHHHHHHH
Confidence 3599999999999999999998866543233332 2211111000000 00000000 00112334578888
Q ss_pred hCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcchh
Q 000943 293 LRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHLL 337 (1214)
Q Consensus 293 L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v~ 337 (1214)
|...+=+|++|...+.+.++.+.... ..|..||+||-+...+
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999999999877766554432 2466788888876554
No 277
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.05 E-value=0.047 Score=61.56 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=37.9
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+.++|++..++.+...+..+ .-+.++|++|+|||+||+++++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 57899999988887777543 35889999999999999999886643
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.00 E-value=0.15 Score=55.06 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeeh-hhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVR-EISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~-~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
...+++|+|+.|.|||||++.+...+...+...+.+.... +....... .+........ +.......+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~---------~~v~q~~~gl-~~~~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGE-DTKSFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTT-TBSCHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc---------eeeeHHHhCC-CHHHHHHHHHH
Confidence 4578999999999999999999886654334555443110 00000000 0000000000 01122455666
Q ss_pred HhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcch
Q 000943 292 RLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEHL 336 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~v 336 (1214)
.|..++=+|++|...+.+....+.... ..|..|++||-+...
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 666678889999998776655444322 346678888877654
No 279
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.97 E-value=0.072 Score=55.23 Aligned_cols=44 Identities=30% Similarity=0.293 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHhhh-cCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 196 IDSRWKKLRFLIDKE-LNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 196 r~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
|+..++++.+.+... .....+|+|.|..|.||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566666555432 23568999999999999999999988664
No 280
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.96 E-value=0.15 Score=57.92 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 200 WKKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 200 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...|..+|. .+-...+++.|.|.+|+||||||..++......-..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555554 22234568899999999999999998876654434566665
No 281
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.88 E-value=0.49 Score=55.41 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHh
Q 000943 199 RWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQ 270 (1214)
Q Consensus 199 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 270 (1214)
-+..|..++. +-....++.|.|.+|+||||+|..++.....+-..++|+. -..+..++...++..
T Consensus 183 G~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 183 GFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 247 (444)
T ss_dssp SCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SSSCTTHHHHHHHHH
T ss_pred CcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CCCCHHHHHHHHHHH
Confidence 3444555552 3344578999999999999999998876654422344442 233444555555544
No 282
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.82 E-value=0.68 Score=54.29 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHHhhhc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLSQLLK 273 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~ 273 (1214)
+..|..++ .+-....++.|.|.+|+||||+|..++...... -..++|+. -..+..++...++....+
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 34455555 333445789999999999999999998766543 23455543 234556677776655433
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.82 E-value=0.049 Score=56.85 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
....+|+|.|+.|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999988665
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.71 E-value=0.028 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|.|.|++|+||||+|+++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988664
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.68 E-value=0.24 Score=57.61 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++|.++|.+|+||||+|..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999877655
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.65 E-value=0.041 Score=62.97 Aligned_cols=48 Identities=27% Similarity=0.266 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHHHhh-------------hcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 192 DLVGIDSRWKKLRFLIDK-------------ELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 192 ~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++|.+..++.+...+.. .....+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 468888888888777630 001345688999999999999999998763
No 287
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.55 E-value=0.068 Score=66.80 Aligned_cols=150 Identities=14% Similarity=0.243 Sum_probs=79.2
Q ss_pred cCcccchhhHHHHHHHHhh-----------hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCC
Q 000943 191 KDLVGIDSRWKKLRFLIDK-----------ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGG 259 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~ 259 (1214)
..+.|.++..++|.+.+.. +....+-|.++|++|.|||.+|++++...... |+. +..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v~~------ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IKG------ 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-CCH------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-ecc------
Confidence 4567888888888776541 11234568899999999999999998865432 222 110
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccchHHHH-HHHhCCCcEEEEEeCCCCHH----------------HHHHHhcccCCCC
Q 000943 260 LISLQKQLLSQLLKLPDSGIWDVYDGLKMI-GTRLRYRRVLLIIDDAFDLK----------------QLESLAGEREWFG 322 (1214)
Q Consensus 260 ~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~~~----------------~l~~l~~~~~~~~ 322 (1214)
.+++....+. .+..+..+ ...-+..+.+|++|+++..- .+..|+..++...
T Consensus 545 -----~~l~s~~vGe-------se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 -----PELLTMWFGE-------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp -----HHHHTTTCSS-------CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred -----chhhccccch-------HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1122221111 11122222 22334678999999987320 1333443333222
Q ss_pred C--CcEEEEEeCCcchhh-hc----CccceeecCCCCHHHHHHHHHHhh
Q 000943 323 P--GSRIIITSRDEHLLT-TY----GVDEVLKLKELHDDEALQLFCKKA 364 (1214)
Q Consensus 323 ~--gs~IIiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (1214)
. +--||-||-.+..+. .+ ..++.+.++..+.++-.++|..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 223343554433322 11 345688888888888888887665
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.50 E-value=0.05 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=21.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.++.|+|+.|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999777766543
No 289
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.39 E-value=0.11 Score=58.27 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..|..+|..+-....++.|+|.+|+||||||..++....
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 344455543323457899999999999999999887653
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.30 E-value=0.041 Score=55.20 Aligned_cols=25 Identities=20% Similarity=0.095 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 291
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.27 E-value=0.13 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=17.8
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
++.|.|.+|.|||++|.....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999977544
No 292
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.26 E-value=1.1 Score=50.88 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=36.1
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..++|....+.++...+..-......|.|+|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 468898888888777765333333447799999999999999987644
No 293
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.13 E-value=0.067 Score=63.54 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=36.4
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 57899999888887766543 368899999999999999998755
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.07 E-value=0.16 Score=56.85 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=44.0
Q ss_pred cchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhh
Q 000943 195 GIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQL 271 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 271 (1214)
|...-...|..++. +-....++.|.|.+|+||||+|..++......-..++|+. -.....++...++...
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 33333445555553 3344578999999999999999998876554323344443 2445566666666553
No 295
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.01 E-value=0.14 Score=59.48 Aligned_cols=32 Identities=41% Similarity=0.567 Sum_probs=25.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccE
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSS 246 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 246 (1214)
+.++|+|.+|+||||||..+......++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 35889999999999999999887665554443
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.97 E-value=0.083 Score=59.17 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred cchhhHHHHHHHHhh--hcCCcEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 195 GIDSRWKKLRFLIDK--ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
+.+.-.+++.+.+.. ..+....|.|+|++|.||||+++.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444555555542 234456799999999999999999998765544
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.97 E-value=0.096 Score=57.62 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.5
Q ss_pred cCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 211 LNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 211 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345789999999999999999998886653
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.93 E-value=0.051 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998773
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.91 E-value=0.05 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+.|.|.|+.|+||||+|+.+++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999988763
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.76 E-value=0.11 Score=55.61 Aligned_cols=40 Identities=15% Similarity=-0.073 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 199 RWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 199 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+.++...+.........|+|.|++|+||||+|+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444443333456789999999999999999998765
No 301
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.68 E-value=1.3 Score=52.04 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccC-ccEEEEeehhhhccCCHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFE-GSSFLANVREISEKGGLISLQKQLLS 269 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~~~~~~~~~l~~~ll~ 269 (1214)
..|..++ .+-....++.|.|.+|+||||||..++..+..... .++|+. ......++...++.
T Consensus 191 ~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 191 TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 3444444 23344568999999999999999999886654322 455543 22334455555543
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.58 E-value=0.28 Score=50.54 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|+|.|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998866
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.55 E-value=0.12 Score=49.30 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=29.1
Q ss_pred EEEecCCCCC--CCCCCCCcccccccccccccccccccc-cccccCccEEecCCCc
Q 000943 587 FLEWHGYPFK--SLPSNFQPENFFELNMCYSRMERMWSG-IKPLSNLKIMRLCNAK 639 (1214)
Q Consensus 587 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~L~~L~~L~Ls~~~ 639 (1214)
.++.++..++ .+|..+ +.+|+.|+|++|+|+.++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3455555555 666543 34455666666666655544 4556666666666553
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.52 E-value=0.1 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.+|.|.|+.|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999988764
No 305
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.51 E-value=0.28 Score=54.88 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....+++|+|+.|+||||+++.++..++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999999999886654
No 306
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.50 E-value=0.4 Score=54.70 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEe-ehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLAN-VREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
...+++|+|+.|.||||+++.+...+.......+.+.. ..+....... .......... +.......++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g~-~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGE-DTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBTT-TBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecCC-CHHHHHHHHHH
Confidence 45789999999999999999998866543334443321 1000000000 0000000000 11223456777
Q ss_pred HhCCCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 292 RLRYRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
.+...+=+|++|.+.+.+.+....... ..|..|+.|+-...
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 788788899999998877665544332 34666777776543
No 307
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.43 E-value=0.08 Score=60.06 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=34.4
Q ss_pred cccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 189 IFKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 189 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+.++|.+...+.+........ ..-|.|+|++|+|||++|+++++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34569999886555433332211 22388999999999999999998664
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.30 E-value=0.12 Score=53.39 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
....+|+|.|+.|.||||+|+.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999998775
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.24 E-value=0.073 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|+|.|+.|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988764
No 310
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.22 E-value=0.32 Score=53.60 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
..++++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887653
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.16 E-value=0.077 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999877
No 312
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.13 E-value=0.072 Score=60.00 Aligned_cols=29 Identities=24% Similarity=0.056 Sum_probs=24.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
-..++|+|.+|.|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 46899999999999999999988665443
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.10 E-value=0.097 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|.|.|++|+||||+|+.+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998866
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.01 E-value=0.5 Score=48.97 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=47.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEEEe---ehhh-hccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLAN---VREI-SEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGT 291 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~-~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~ 291 (1214)
+|.|.|++|+||+|.|+.+++++. ...+.. +|+. .....+....+..+.. ...- ..+-....+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~----G~lv--pd~iv~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER----GELV--PDDLIIALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH----TCCC--CHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc----CCcC--CHHHHHHHHHH
Confidence 477899999999999999887652 223321 1111 1111122222222222 1111 12234566777
Q ss_pred HhCCCcEEEEEeCCC-CHHHHHHHh
Q 000943 292 RLRYRRVLLIIDDAF-DLKQLESLA 315 (1214)
Q Consensus 292 ~L~~kr~LlVLDdv~-~~~~l~~l~ 315 (1214)
++..... +|||++- +..|.+.|.
T Consensus 71 ~l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 71 VFPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp HCCSSSC-EEEESCCCSHHHHHHHH
T ss_pred hhccCCc-eEecCCchhHHHHHHHH
Confidence 7766544 6899985 455655543
No 315
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.87 E-value=0.091 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
...+++|.|+.|.|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999998764
No 316
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.79 E-value=0.13 Score=57.13 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=25.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+.++|+|.|-|||||||.|..++-.+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467999999999999999998888766554
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.78 E-value=0.069 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+.|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998766
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.76 E-value=0.13 Score=51.28 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877654
No 319
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.75 E-value=0.21 Score=55.91 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..|..+|..+-....++.|+|.+|+|||+||..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554333345799999999999999999988653
No 320
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.73 E-value=1.6 Score=47.62 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=25.5
Q ss_pred cchHHHHHhhhccEEEEEecCCcccchhhHHHHHHHH
Q 000943 57 ISPGLFKAIEESRISIIVFSRNYAHSTWCLDELVKIV 93 (1214)
Q Consensus 57 ~~~~~~~ai~~s~~~i~v~S~~y~~s~wc~~El~~~~ 93 (1214)
...++.+.+++++++|.|+.-.-..+..+ .++...+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 34688999999999999988766555554 2444433
No 321
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.72 E-value=0.071 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|+|+.|.||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987653
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.70 E-value=0.058 Score=55.04 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=22.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
|.|.|.|+.|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999877654444
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.69 E-value=0.15 Score=51.98 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...+|.|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987754
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.57 E-value=0.092 Score=52.93 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|.|.|++|.||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988764
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.57 E-value=0.1 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|.|.|+.|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988663
No 326
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.55 E-value=0.18 Score=58.66 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.++|+|+|.+|+||||+|..++..+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999998866544
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.49 E-value=0.095 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999887653
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.47 E-value=0.1 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=23.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.+|.|.|++|+||||+|+.+++++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999987754
No 329
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.40 E-value=0.38 Score=57.84 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.+..+|..+-..-.+++|.|..|+|||||++.++......-..++++.
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344444432234578999999999999999999876554322234443
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.33 E-value=0.09 Score=54.42 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.31 E-value=0.083 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=21.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988663
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.29 E-value=0.11 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|+|.|+.|+||||+|+.+++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998766
No 333
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.23 E-value=0.12 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|+.|.||||+|+.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.16 E-value=0.11 Score=52.70 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999987653
No 335
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.16 E-value=0.16 Score=52.04 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+..+..++.. -+....+.|+|++|.||||+|.++++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556666542 223346899999999999999999887643
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.15 E-value=0.13 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999988765
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.93 E-value=0.12 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|.|++|+||||+|+.+++++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988764
No 338
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.91 E-value=0.18 Score=52.60 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
..+|+|.|+.|+||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998876543
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.90 E-value=0.1 Score=53.20 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=24.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFE 243 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 243 (1214)
++++|.|+.|.|||||++.+...+...|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57899999999999999999887654443
No 340
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.90 E-value=0.1 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|.|+.|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988663
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.89 E-value=0.13 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|+|.|+.|+||||+|+.+++++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999988754
No 342
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.88 E-value=0.35 Score=54.90 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.++...+........+|+|+|.+|+|||||+..+...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444444344567899999999999999999988766443
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.82 E-value=0.2 Score=51.96 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
.+|+|.|+.|+||||+|+.+++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 6799999999999999999998776543
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.81 E-value=0.14 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...|+|.|+.|+||||+|+.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 345
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.77 E-value=0.11 Score=53.22 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=42.9
Q ss_pred ccccceecccccCCC----CCccccCCCCcceEEEeeCccCc-----ccCcccCCCCCCcEEecCCCCC--CC-----cC
Q 000943 698 IHLRKLVLSGCSKLK----KFPEVVGSMECLLELFLDGTAIE-----ELPSSIQLLNGLILLNLEKCTH--LV-----GL 761 (1214)
Q Consensus 698 ~~L~~L~Ls~c~~l~----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~--l~-----~l 761 (1214)
..|+.|+|++|..-. .+.+.+..-+.|++|+|++|.|. .+-..+..-+.|+.|+|++|.. .. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 345555555544221 22333334456777777777765 3444555566677777775532 11 12
Q ss_pred CcccCCCCCCCEEEecCC
Q 000943 762 PSTINDLTSLITLNLSGC 779 (1214)
Q Consensus 762 p~~l~~L~sL~~L~ls~c 779 (1214)
-..+..-+.|+.|+++.+
T Consensus 150 a~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCCcCeEeccCC
Confidence 223344556666666543
No 346
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.77 E-value=0.33 Score=57.48 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++|+|+|.+|+||||++.+++..+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999998876654
No 347
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.77 E-value=0.66 Score=54.31 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999998866543 3455554
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.76 E-value=0.13 Score=55.37 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999888654
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.75 E-value=0.14 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988664
No 350
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.74 E-value=4.3 Score=46.38 Aligned_cols=47 Identities=26% Similarity=0.277 Sum_probs=35.0
Q ss_pred cCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 191 KDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
..++|....++++.+.+..-...-..|.|.|..|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35788888888877776643332234589999999999999988764
No 351
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.66 E-value=0.19 Score=58.29 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=36.7
Q ss_pred cCcccchhhHHHHHHHHhhh------------cCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 191 KDLVGIDSRWKKLRFLIDKE------------LNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 191 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+.++|.+...+.+...+... ....+-|.++|++|+||||+|++++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46788888777776655311 012456889999999999999999887643
No 352
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.64 E-value=0.15 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|+.|+||||+|+.+++++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 353
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.61 E-value=0.14 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
...|+|+|+.|+||||+|+.++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998875
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.58 E-value=0.1 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.4
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|.|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999877653
No 355
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.57 E-value=0.31 Score=54.71 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=57.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCCCcccccchHHHHHHHhC
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDSGIWDVYDGLKMIGTRLR 294 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~~~~~~~~~~~~l~~~L~ 294 (1214)
.+++|+|..|.|||||++.+...+.. -...+.+....+.... ... ... .+... .-......+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~----~~i-~~~~g------gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK----NYT-QLFFG------GNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS----SEE-EEECB------TTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch----hEE-EEEeC------CChhHHHHHHHHhh
Confidence 57999999999999999998765432 2455555533211100 000 000 00000 11233456677788
Q ss_pred CCcEEEEEeCCCCHHHHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 295 YRRVLLIIDDAFDLKQLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 295 ~kr~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
.++=+|++|.+...+.++.+.. .. ..+..+|+||....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~-~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNV-LC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHH-HH--TTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHHH-Hh--cCCCEEEEEEcccH
Confidence 8888999999987554444332 21 11223566665443
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.46 E-value=0.16 Score=52.39 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
....+|+|.|+.|.||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999998774
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.44 E-value=0.14 Score=53.89 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|.|.|++|+||||+|+.+++++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988663
No 358
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.40 E-value=0.15 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.+++|.|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.37 E-value=0.17 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988765
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.36 E-value=0.15 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+|+|+|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999988755
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.33 E-value=0.15 Score=52.56 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|+|.|++|+||||+|+.+++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988663
No 362
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.24 E-value=0.15 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|+|+|+.|+|||||++.+...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.24 E-value=0.11 Score=53.89 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|+|.|+.|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988663
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.23 E-value=0.24 Score=55.12 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHHhhh--cCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 193 LVGIDSRWKKLRFLIDKE--LNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 193 ~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
++|-...+..+...+... .....+|+|.|..|.||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345445555544444322 34567999999999999999999877664
No 365
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.17 E-value=0.19 Score=52.27 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 366
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.11 E-value=0.23 Score=52.97 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4468999999999999999888765544334455554
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.09 E-value=0.21 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999987754
No 368
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.08 E-value=0.11 Score=53.38 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=58.5
Q ss_pred cccCCCcEEeecCC-CCCCCCCcccccccCCcccccCCCcCCCCCCCEEecCCCCCCC---CCcccccCCCCCCcEEeCC
Q 000943 808 FSMQNFEALSFLGW-TLPQSLPSPYLRRSSHNVALRLPSLLGLCSLTKLDLSDCNLGE---GAIPSDIGNLCSLKELCLS 883 (1214)
Q Consensus 808 ~~l~~L~~L~l~~~-~~~~~l~~~~l~~~~~~~~~~lp~~~~l~~L~~L~Ls~~~l~~---~~lp~~l~~l~sL~~L~L~ 883 (1214)
..-+.|+.|+++++ .+... .... ....+...++|+.|+|++|.+.+ ..+-..+..-+.|+.|+|+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~-ga~~----------la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE-RIRS----------LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH-HHHH----------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred hcCCCccEEECCCCCCCCHH-HHHH----------HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 34567888888775 33211 0000 00114455789999999998864 2334445566789999999
Q ss_pred CCCCe-----ecCcccCCCCCCCEEeecCCc
Q 000943 884 KNKFI-----LLPESISCLSKLWIIDLEECK 909 (1214)
Q Consensus 884 ~n~l~-----~lp~~i~~l~~L~~L~L~~C~ 909 (1214)
.|.+. .|-..+..-+.|+.|+|++|.
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 99887 444566666779999998753
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.07 E-value=0.15 Score=52.68 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
+|+|.|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999877
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.07 E-value=0.18 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=23.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988754
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.02 E-value=0.17 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=21.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.02 E-value=0.17 Score=52.60 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877543
No 373
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.90 E-value=0.14 Score=52.71 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 374
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.79 E-value=0.36 Score=55.53 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..|..+|..+-..-.++.|+|.+|+|||||+..++-
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 445555543333457899999999999999998764
No 375
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.73 E-value=0.19 Score=52.16 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998653
No 376
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.70 E-value=0.16 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999988754
No 377
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.69 E-value=0.19 Score=50.86 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988664
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.64 E-value=0.43 Score=49.85 Aligned_cols=43 Identities=28% Similarity=0.300 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 197 DSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 197 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
++..+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 4444555555533 357899999999999999999988766444
No 379
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.58 E-value=0.18 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|+.|.||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998766
No 380
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.57 E-value=0.18 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+|+|.|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999987755
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.54 E-value=0.22 Score=50.25 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
..+|+|.|+.|.||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.35 E-value=0.2 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988765
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.34 E-value=0.21 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|+|.|+.|.||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988753
No 384
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.34 E-value=0.73 Score=51.86 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=24.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhccc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHEF 242 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 242 (1214)
-+.++|.|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 35789999999999999999998765433
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.23 E-value=0.17 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988764
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.16 E-value=0.14 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887754
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.14 E-value=0.19 Score=51.99 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 388
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.12 E-value=0.22 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhc
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887744
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.10 E-value=0.59 Score=48.95 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 200 WKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 200 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+.+...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 356889999999999999999988765433
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.97 E-value=0.17 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988764
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.93 E-value=0.27 Score=66.90 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|..+|. .+-...+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555564 22345678999999999999999999887665544566664
No 392
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.93 E-value=1.5 Score=52.23 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHHhhhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLSQLLK 273 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~ 273 (1214)
..-.++.|.|.+|+||||||..++.....+ -..++|+. -.....++...++....+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHNR 296 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHcC
Confidence 345788999999999999999998877654 23455554 234556677766655443
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.90 E-value=0.2 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...|+|.|++|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999988754
No 394
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.88 E-value=0.59 Score=62.91 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=36.8
Q ss_pred HHHHHHhh-hcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLIDK-ELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|...|.. +-..-++|-|+|+.|+||||||.++....+.+-...+|+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~ 1466 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1466 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44455542 2245689999999999999999999987777767777875
No 395
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.78 E-value=0.2 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|.|+.|.||||+++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 396
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=88.72 E-value=0.77 Score=53.27 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=33.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc-cCccEEEEeehhhhccCCHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE-FEGSSFLANVREISEKGGLISLQKQLLS 269 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 269 (1214)
-..++|.|.+|+|||+|+..+++.+... -+.++|+ -+.+ +.....++.+++..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 3578999999999999999998876433 2334443 2322 12334555555554
No 397
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.62 E-value=0.28 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
...+|+|.|+.|.|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 398
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.61 E-value=0.2 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 399
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.60 E-value=0.21 Score=52.16 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987654
No 400
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.57 E-value=0.81 Score=53.30 Aligned_cols=53 Identities=28% Similarity=0.230 Sum_probs=34.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc-ccCccEEEEeehhhhccCCHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH-EFEGSSFLANVREISEKGGLISLQKQLLS 269 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 269 (1214)
-..++|.|.+|+|||+|+..+.+.+.. +-+.++|+. +.+ +.....++.+++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 356899999999999999999987643 334455543 322 22344555555554
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.44 E-value=0.29 Score=50.97 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+|.|.|+.|.||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999988765
No 402
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.44 E-value=0.22 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.3
Q ss_pred CcEEEEEEecCCchHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVV 234 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v 234 (1214)
...+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3478999999999999999963
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.33 E-value=0.6 Score=63.64 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 202 KLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 202 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
.|...+. ..-...+.+.|+|.+|.|||+||.++......+-..+.|+.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4444442 22235678999999999999999999886666655666665
No 404
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.31 E-value=0.3 Score=54.31 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....+|+|.|..|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45689999999999999999999886643
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.31 E-value=0.25 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.21 E-value=0.27 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+|+|.|+.|.||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988664
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.06 E-value=0.26 Score=60.44 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=38.5
Q ss_pred ccCcccchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 190 FKDLVGIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 190 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...++|.+..++.+...+..+ ..+.|+|++|.||||||+.++..+..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 367899998888887777543 57899999999999999999886543
No 408
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.03 E-value=0.57 Score=56.76 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.+++.|.|.+|.||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3688899999999999999998866544
No 409
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.95 E-value=0.39 Score=53.12 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+|+|+|+.|+||||+++.++..+... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999998866543 3444443
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.94 E-value=0.29 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..|.|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.93 E-value=0.23 Score=53.42 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+|.|.|++|.||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.89 E-value=0.29 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 413
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.84 E-value=0.51 Score=46.62 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....+++|.|+-|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999998865
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.83 E-value=0.36 Score=51.41 Aligned_cols=37 Identities=24% Similarity=0.133 Sum_probs=26.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH-hcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI-AHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 249 (1214)
.-.++.|.|.+|+|||++|.+++... ...-..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 45689999999999999998876543 33333444543
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.80 E-value=0.3 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998866
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.76 E-value=0.29 Score=51.65 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+|+|.|++|.||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988663
No 417
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.76 E-value=0.44 Score=52.87 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=25.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...++|+|+|-||+||||+|..++..+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356889999999999999999998877654
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.45 E-value=0.31 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=22.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|.|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988764
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.41 E-value=0.31 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|+|.|+.|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.40 E-value=0.34 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.36 E-value=0.21 Score=54.94 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 422
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.31 E-value=0.52 Score=50.99 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=26.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
++|+|.|-||+||||+|..++..+..+-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998776543333333
No 423
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.30 E-value=0.26 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 424
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.25 E-value=0.3 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988765
No 425
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.17 E-value=0.29 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+++|+|+.|.|||||++.+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988755
No 426
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.14 E-value=0.3 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
++|.|+|+.|+||||||+.+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=87.09 E-value=0.49 Score=47.54 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887654
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.03 E-value=0.52 Score=53.68 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=24.3
Q ss_pred hcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 210 ELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 210 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
+-...++++|+|+.|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33456799999999999999999998754
No 429
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.98 E-value=1.7 Score=46.85 Aligned_cols=29 Identities=7% Similarity=-0.067 Sum_probs=22.6
Q ss_pred cchHHHHHhhhccEEEEEecCCcccchhh
Q 000943 57 ISPGLFKAIEESRISIIVFSRNYAHSTWC 85 (1214)
Q Consensus 57 ~~~~~~~ai~~s~~~i~v~S~~y~~s~wc 85 (1214)
...++.+.+++++++|.|++-+-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 44689999999999999998765555544
No 430
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=86.95 E-value=0.67 Score=44.02 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=42.6
Q ss_pred eecccCccCC--CCccCCCCCceEEEecCCCCCCCCCCC--Cccccccccccccccc
Q 000943 566 MLTIGNVQLP--EGLEFLPNELRFLEWHGYPFKSLPSNF--QPENFFELNMCYSRME 618 (1214)
Q Consensus 566 ~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~ 618 (1214)
.++.+++.+. ..+..+|..|+.|++++|.++.+|... .+.+|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666665 556678889999999999999999865 6889999999999654
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.93 E-value=0.58 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999988766
No 432
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.88 E-value=0.64 Score=48.50 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 457789999999999999988876554
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.84 E-value=0.24 Score=55.10 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..++|.|+|+.|+||||||..+++++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999988754
No 434
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.80 E-value=0.51 Score=52.09 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=27.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+++|+|+.|+||||+++.++..+... ...+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 35799999999999999999998866533 3444443
No 435
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.79 E-value=0.26 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999988754
No 436
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.69 E-value=0.33 Score=49.61 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHh
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 437
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.57 E-value=0.58 Score=51.31 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=23.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
.++|+|.|-||+||||+|..++..+..+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3688889999999999999998877654
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.38 E-value=0.32 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999988754
No 439
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.17 E-value=0.37 Score=50.54 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
..+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 440
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.16 E-value=0.54 Score=51.75 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..-.+++|.|.+|+|||||++.++..+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999998866543
No 441
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.15 E-value=0.47 Score=52.66 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988664
No 442
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=85.97 E-value=1.1 Score=46.38 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEEeehhhhccCCHHHHHHHHHHhhhcCCCC--CcccccchHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLANVREISEKGGLISLQKQLLSQLLKLPDS--GIWDVYDGLKMIG 290 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ll~~~~~--~~~~~~~~~~~l~ 290 (1214)
...+..++|..|.||||.|...+.+...+-..++++.... ....+.. .+.+.+ +.... ...+.. .+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~----~i~s~~-g~~~~a~~~~~~~----~~~ 95 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEE----DVVSHN-GLKVKAVPVSASK----DIF 95 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG----GGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHH----HHHhhc-CCeeEEeecCCHH----HHH
Confidence 3478889999999999999888887765544444443111 1111111 122221 11100 011111 122
Q ss_pred HHhCCCcEEEEEeCCCC--HHHHHHHhcccCCCCCCcEEEEEeCCcc
Q 000943 291 TRLRYRRVLLIIDDAFD--LKQLESLAGEREWFGPGSRIIITSRDEH 335 (1214)
Q Consensus 291 ~~L~~kr~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IIiTTR~~~ 335 (1214)
+.+.++--+|++|.++- .++++.+.... ..|-.||+|.++..
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 22233344999999874 34554443311 23779999999653
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.89 E-value=0.39 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..++|.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 444
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.70 E-value=0.63 Score=49.96 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+..++.........|.++|++|.|||.+|.++++.+
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3555555432334569999999999999999998743
No 445
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=85.66 E-value=1.1 Score=50.53 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=25.6
Q ss_pred hcCCcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 210 ELNGVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 210 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
......+|+|+|.+|+||||++..+...+..
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3356789999999999999999998876543
No 446
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.56 E-value=0.69 Score=50.89 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
..++++|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999998876543 3444444
No 447
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.47 E-value=1.2 Score=59.98 Aligned_cols=54 Identities=26% Similarity=0.256 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHh-hhcCCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 196 IDSRWKKLRFLID-KELNGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 196 r~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...-...|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 364 isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333456666664 33345679999999999999999998876655444566664
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.33 E-value=0.48 Score=50.25 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....+|+|.|+.|.||||+++.++.++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999988765
No 449
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.22 E-value=0.61 Score=55.20 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...+|.+.|+.|.||||+|+++++++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4478999999999999999999998864
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.18 E-value=0.68 Score=52.31 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+++|+|+.|+||||+++.++..+... ...+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35799999999999999999998866543 3444443
No 451
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.18 E-value=1.5 Score=45.00 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=26.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 216 MIGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
.|+|-|.-|+||||.++.+++.+..+...+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 378899999999999999999887665444444
No 452
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.13 E-value=0.29 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=16.4
Q ss_pred cEEEEEEecCCchHHHHHHHHH-HHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVY-DLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 238 (1214)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999988 644
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.12 E-value=0.45 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
.+|.|.|++|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998774
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.92 E-value=0.55 Score=53.08 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=28.4
Q ss_pred HHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 202 KLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 202 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.|..+|..+-..-.++.|+|+.|+|||||++.++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554333456899999999999999999998765
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.82 E-value=0.78 Score=50.00 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
-.+++|+|.+|+||||||..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999998875543
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.77 E-value=0.4 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
.+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999987653
No 457
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.61 E-value=1.3 Score=46.16 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...|.|.|+.|.||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999988654
No 458
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.55 E-value=0.42 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
.+++|+|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998865
No 459
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.52 E-value=0.64 Score=49.09 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....|+|.|+.|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999998765
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.51 E-value=0.57 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999988764
No 461
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.34 E-value=1.9 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.+++|+|+.|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 5899999999999999998753
No 462
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.34 E-value=0.8 Score=54.72 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=26.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcccC
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHEFE 243 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 243 (1214)
...+|.++|++|.||||+|+++++.+...|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 4578999999999999999999987755443
No 463
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.16 E-value=0.55 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.|+|+|..|+|||||++.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45789999999999999999876
No 464
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.10 E-value=2 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
...+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 465
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.98 E-value=0.7 Score=53.22 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHH
Q 000943 201 KKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 201 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.++.+.|........+++|+|..|+|||||.+.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344555543334567999999999999999999876
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.92 E-value=0.58 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988764
No 467
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.86 E-value=0.52 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.. .+++|+|+.|.|||||++.++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999999875
No 468
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.84 E-value=1.4 Score=49.32 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.8
Q ss_pred cCCcEEEEEEecCCchHHHHHHHHHHHHh
Q 000943 211 LNGVRMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 211 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
-....+++|+|.+|+|||||.+.+...+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999999999999999987554
No 469
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.81 E-value=0.63 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
+.|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999998875
No 470
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.69 E-value=0.47 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 471
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=83.55 E-value=0.61 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHHh
Q 000943 215 RMIGICGMGGIGKTTLARVVYDLIA 239 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~~~~ 239 (1214)
.+|+|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998774
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.46 E-value=0.86 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
...+|+|+|+.|.|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999987754
No 473
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.40 E-value=0.48 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|+|+.|.|||||++.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999998864
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.21 E-value=0.9 Score=46.01 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
....|+|+|.+|+|||||+..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999998865
No 475
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=83.21 E-value=2.3 Score=44.78 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=17.3
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVY 235 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~ 235 (1214)
+.+.|.|..|.||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 578999999999998765543
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.16 E-value=0.9 Score=46.68 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=25.2
Q ss_pred EEEEEE-ecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 215 RMIGIC-GMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 215 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
++|+|+ +-||+||||+|..++..+..+-..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 578887 6799999999999988776543334444
No 477
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.02 E-value=0.92 Score=48.24 Aligned_cols=32 Identities=28% Similarity=0.603 Sum_probs=24.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcccCccEEE
Q 000943 217 IGICGMGGIGKTTLARVVYDLIAHEFEGSSFL 248 (1214)
Q Consensus 217 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 248 (1214)
|+|.|-||+||||+|..++..+..+-..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999998776653333333
No 478
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.76 E-value=1.2 Score=47.19 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.9
Q ss_pred CcEEEEEEe-cCCchHHHHHHHHHHHHhcccCccEEEEee
Q 000943 213 GVRMIGICG-MGGIGKTTLARVVYDLIAHEFEGSSFLANV 251 (1214)
Q Consensus 213 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 251 (1214)
..++|+|+| -||+||||+|..++..+.......+.+.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 457888875 699999999999999887652333444333
No 479
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=82.74 E-value=0.69 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 000943 215 RMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 215 ~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999864
No 480
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=82.72 E-value=6.3 Score=41.50 Aligned_cols=39 Identities=23% Similarity=0.075 Sum_probs=27.0
Q ss_pred cchhhHHHHHHHHhhhcCCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 195 GIDSRWKKLRFLIDKELNGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 195 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
=|+.+.+.+..++.. +-+.|+|..|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 345555555555532 127789999999999998887654
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.66 E-value=0.45 Score=55.28 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
....+|.|+|++|.||||+|++++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999987644
No 482
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.62 E-value=0.53 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
.-.+++|+|+.|.|||||++.++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998753
No 483
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.56 E-value=0.66 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
...|+|+|..|+|||||.+.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35689999999999999999876
No 484
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.54 E-value=1.6 Score=45.58 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAH 240 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 240 (1214)
....|.|.|+.|.||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.44 E-value=0.99 Score=49.67 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHH
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLI 238 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 238 (1214)
..-.+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445789999999999999999998765
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.37 E-value=0.64 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
-.+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998763
No 487
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.32 E-value=0.55 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999864
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.10 E-value=1.4 Score=46.37 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4679999999999999999999988654
No 489
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.04 E-value=0.57 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|+|+.|.|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999865
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.03 E-value=0.67 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998763
No 491
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.95 E-value=1.1 Score=51.12 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCcEEEEEEe-cCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 212 NGVRMIGICG-MGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 212 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...++|+|+| -||+||||+|..++..+..+-..+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3568899885 8999999999999887765533344443
No 492
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=81.94 E-value=1.3 Score=49.49 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHHhcccCccEEEE
Q 000943 212 NGVRMIGICGMGGIGKTTLARVVYDLIAHEFEGSSFLA 249 (1214)
Q Consensus 212 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 249 (1214)
...+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678888999999999999999987776544444443
No 493
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.89 E-value=0.59 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 494
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.89 E-value=1.2 Score=51.36 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHHhcc
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYDLIAHE 241 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 241 (1214)
..++++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 495
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.78 E-value=0.59 Score=50.57 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999865
No 496
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.77 E-value=0.74 Score=44.95 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 000943 216 MIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 216 vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.|+++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999875
No 497
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.68 E-value=0.52 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.63 E-value=0.71 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHH
Q 000943 213 GVRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 213 ~~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
.-.+++|+|+.|.|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999874
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.62 E-value=0.61 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYD 236 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~ 236 (1214)
-.+++|+|+.|.|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 500
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.59 E-value=0.62 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHH
Q 000943 214 VRMIGICGMGGIGKTTLARVVYDL 237 (1214)
Q Consensus 214 ~~vv~I~G~gGiGKTtLA~~v~~~ 237 (1214)
-.+++|+|+.|.|||||++.++..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998763
Done!