Your job contains 1 sequence.
>000944
MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ
TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI
GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ
IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH
RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP
RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKY
DPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTL
LAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGI
GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSH
LEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGE
ILKKLEEIRNKIV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000944
(1213 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 5562 0. 1
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 5562 0. 1
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 3758 0. 1
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 3757 0. 1
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 3757 0. 1
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 3756 0. 1
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 3743 0. 1
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 3730 0. 1
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 3575 0. 1
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 3154 0. 1
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 3038 8.7e-317 1
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 1836 1.7e-288 2
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 1392 3.1e-287 2
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 2666 2.3e-277 1
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 1306 2.6e-275 3
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 1306 2.6e-275 3
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 1121 4.4e-191 2
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 848 5.7e-142 2
UNIPROTKB|F1NZF7 - symbol:SF3B3 "Uncharacterized protein"... 1348 1.1e-137 1
UNIPROTKB|F1S419 - symbol:LOC100512659 "Uncharacterized p... 783 3.1e-77 1
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN... 525 5.5e-73 4
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 332 2.0e-63 4
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr... 342 3.4e-61 4
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 370 3.6e-59 4
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ... 363 5.5e-50 4
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 353 2.7e-49 4
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 353 4.4e-49 4
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 352 5.6e-49 4
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 346 9.9e-49 4
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 348 1.6e-48 4
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 353 1.8e-48 4
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 345 3.3e-48 4
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 347 8.4e-48 4
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 353 1.1e-47 5
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 353 1.3e-46 4
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 352 1.5e-46 4
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 337 2.8e-46 4
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind... 279 2.2e-45 3
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 353 3.0e-44 5
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 353 2.0e-43 5
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 353 2.6e-43 5
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd... 239 8.6e-39 4
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote... 239 8.6e-39 4
TAIR|locus:2081576 - symbol:AT3G11960 species:3702 "Arabi... 209 1.3e-36 5
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei... 281 3.0e-23 1
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei... 215 9.3e-20 2
FB|FBgn0024698 - symbol:Cpsf160 "Cleavage and polyadenyla... 116 1.5e-17 6
ASPGD|ASPL0000052925 - symbol:ddbA species:162425 "Emeric... 144 9.1e-17 3
TAIR|locus:2153122 - symbol:CPSF160 "cleavage and polyade... 174 8.2e-16 4
UNIPROTKB|Q10570 - symbol:CPSF1 "Cleavage and polyadenyla... 131 1.0e-15 6
UNIPROTKB|G4N4E2 - symbol:MGG_16867 "Uncharacterized prot... 144 1.4e-15 3
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim... 204 3.1e-15 2
UNIPROTKB|Q10569 - symbol:CPSF1 "Cleavage and polyadenyla... 128 4.1e-15 6
UNIPROTKB|F1PC28 - symbol:CPSF1 "Uncharacterized protein"... 114 6.3e-15 5
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya... 113 1.6e-14 7
MGI|MGI:2679722 - symbol:Cpsf1 "cleavage and polyadenylat... 115 5.7e-14 5
UNIPROTKB|F5H775 - symbol:DDB1 "DNA damage-binding protei... 187 3.2e-13 1
POMBASE|SPAC17H9.10c - symbol:ddb1 "damaged DNA binding p... 117 6.3e-12 5
RGD|1306406 - symbol:Cpsf1 "cleavage and polyadenylation ... 91 1.9e-10 7
UNIPROTKB|F5H0Y5 - symbol:DDB1 "DNA damage-binding protei... 158 3.9e-10 1
DICTYBASE|DDB_G0281585 - symbol:cpsf1 "cleavage and polya... 94 1.1e-09 5
UNIPROTKB|J9P418 - symbol:CPSF1 "Uncharacterized protein"... 114 3.4e-09 4
UNIPROTKB|F1RSN8 - symbol:CPSF1 "Uncharacterized protein"... 114 4.0e-05 4
UNIPROTKB|F5H581 - symbol:DDB1 "DNA damage-binding protei... 128 5.7e-05 1
WB|WBGene00022301 - symbol:cpsf-1 species:6239 "Caenorhab... 112 0.00010 4
UNIPROTKB|Q9N4C2 - symbol:cpsf-1 "Probable cleavage and p... 112 0.00010 4
UNIPROTKB|F5GZY8 - symbol:DDB1 "DNA damage-binding protei... 107 0.00011 1
UNIPROTKB|F5GYG8 - symbol:DDB1 "DNA damage-binding protei... 103 0.00028 1
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 5562 (1963.0 bits), Expect = 0., P = 0.
Identities = 1042/1214 (85%), Positives = 1137/1214 (93%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MYLYSLTLQQ TGI+ AINGNFSG KT EI VARGK+L+LLRP+ +G+I+T+ S E+FGA
Sbjct: 1 MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA 60
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
IRSLAQFRLTG+QKDYIVVGSDSGRIVILEYN KNVFDK+HQETFGKSGCRRIVPGQY+
Sbjct: 61 IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYV 120
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
AVDPKGRAVMIGACEKQKLVYVLNRDT ARLTISSPLEAHKSHTI YS+CG+DCGFDNPI
Sbjct: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI 180
Query: 181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240
FAAIELDYSEADQD TGQAASEAQK+LTFYELDLGLNHVSRKWS PVDNGANMLVTVPGG
Sbjct: 181 FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG 240
Query: 241 GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ 300
DGPSGVLVCAENFVIY NQGHPDVRAVIPRR DLPAERGVL+VSAA H+QKT+FFFL+Q
Sbjct: 241 ADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQ 300
Query: 301 TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI 360
TEYGD+FKVTL+H+ +HVSELK+KYFDTIPV +S+CVLK G+LF+ASEFGNH LYQFQAI
Sbjct: 301 TEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAI 360
Query: 361 GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ 420
G +PDVE+SSS LMETEEGFQPVFFQPR LKNLVRI+QVESLMP+MDM++ N+FEEE PQ
Sbjct: 361 GEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQ 420
Query: 421 IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
IF+LCGRGPRSSLRILRPGLA++EMAVSQLPG PSAVWTVKKNV+DEFDAYIVVSF NAT
Sbjct: 421 IFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT 480
Query: 481 LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR 540
LVLSIGE VEEV+DSGFLDTTPSLAVSLIGDDSLMQVHP+GIRHIREDGRINEWRTPGKR
Sbjct: 481 LVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR 540
Query: 541 TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR 600
+IVKVG NRLQVVIALSGGELIYFE DMTGQL+EVEKHEMSGDVACLDIA VPEGRKRSR
Sbjct: 541 SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSR 600
Query: 601 FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660
FLAVGSYDNT+RILSLDPDDC+QILSVQSVSS PESLLFLEVQAS+GG+DGADHPA+LFL
Sbjct: 601 FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFL 660
Query: 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH 720
N+GLQNGVLFRTVVDMVTGQLSDSRSRFLGL+PPKLFS+ V GR+AMLCLSSRPWLGYIH
Sbjct: 661 NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIH 720
Query: 721 RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP 780
RG F LTPLSYETLE+AA FSSDQC EGVVSVAG+ALR+F I+RLGETFNET +PLRYTP
Sbjct: 721 RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTP 780
Query: 781 RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXXXXX-ENK 839
R+FVL PK+KL+VIIE+DQGA TAEEREAA+KECF E+K
Sbjct: 781 RKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDK 840
Query: 840 YDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGT 899
DPLSDEQYGYPKAES+KWVSCIRVLDP++A TTCLLELQDNEAA+S+CTVNFHDKE+GT
Sbjct: 841 EDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGT 900
Query: 900 LLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAG 959
LLAVGT KG+QFWPK+N+VAG+IHIYRFVE+GKSLELLHKTQVEG+PLALCQFQGRLLAG
Sbjct: 901 LLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAG 960
Query: 960 IGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019
IGPVLRLYDLGKKRLLRKCENKLFPNTI+SI TYRDRIYVGDIQESFH+CKYRRDENQLY
Sbjct: 961 IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY 1020
Query: 1020 IFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1079
IFADD VPRWLTA+HH+DFDTMAGADKFGN+YFVRLPQD+S+EIEEDPTGGKIKWEQGKL
Sbjct: 1021 IFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKL 1080
Query: 1080 NGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFS 1139
NGAPNK++EIVQFHVGDVVT LQKAS++PGG ES++YGTVMGS+GA+ AF+SRDDVDFFS
Sbjct: 1081 NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS 1140
Query: 1140 HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
HLEMHMRQE+PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTL +DLQRKIADELDRTP
Sbjct: 1141 HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPA 1200
Query: 1200 EILKKLEEIRNKIV 1213
EILKKLE+ RNKI+
Sbjct: 1201 EILKKLEDARNKII 1214
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 5562 (1963.0 bits), Expect = 0., P = 0.
Identities = 1042/1214 (85%), Positives = 1137/1214 (93%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MYLYSLTLQQ TGI+ AINGNFSG KT EI VARGK+L+LLRP+ +G+I+T+ S E+FGA
Sbjct: 1 MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA 60
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
IRSLAQFRLTG+QKDYIVVGSDSGRIVILEYN KNVFDK+HQETFGKSGCRRIVPGQY+
Sbjct: 61 IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYV 120
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
AVDPKGRAVMIGACEKQKLVYVLNRDT ARLTISSPLEAHKSHTI YS+CG+DCGFDNPI
Sbjct: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI 180
Query: 181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240
FAAIELDYSEADQD TGQAASEAQK+LTFYELDLGLNHVSRKWS PVDNGANMLVTVPGG
Sbjct: 181 FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG 240
Query: 241 GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ 300
DGPSGVLVCAENFVIY NQGHPDVRAVIPRR DLPAERGVL+VSAA H+QKT+FFFL+Q
Sbjct: 241 ADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQ 300
Query: 301 TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI 360
TEYGD+FKVTL+H+ +HVSELK+KYFDTIPV +S+CVLK G+LF+ASEFGNH LYQFQAI
Sbjct: 301 TEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAI 360
Query: 361 GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ 420
G +PDVE+SSS LMETEEGFQPVFFQPR LKNLVRI+QVESLMP+MDM++ N+FEEE PQ
Sbjct: 361 GEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQ 420
Query: 421 IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
IF+LCGRGPRSSLRILRPGLA++EMAVSQLPG PSAVWTVKKNV+DEFDAYIVVSF NAT
Sbjct: 421 IFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT 480
Query: 481 LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR 540
LVLSIGE VEEV+DSGFLDTTPSLAVSLIGDDSLMQVHP+GIRHIREDGRINEWRTPGKR
Sbjct: 481 LVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR 540
Query: 541 TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR 600
+IVKVG NRLQVVIALSGGELIYFE DMTGQL+EVEKHEMSGDVACLDIA VPEGRKRSR
Sbjct: 541 SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSR 600
Query: 601 FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660
FLAVGSYDNT+RILSLDPDDC+QILSVQSVSS PESLLFLEVQAS+GG+DGADHPA+LFL
Sbjct: 601 FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFL 660
Query: 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH 720
N+GLQNGVLFRTVVDMVTGQLSDSRSRFLGL+PPKLFS+ V GR+AMLCLSSRPWLGYIH
Sbjct: 661 NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIH 720
Query: 721 RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP 780
RG F LTPLSYETLE+AA FSSDQC EGVVSVAG+ALR+F I+RLGETFNET +PLRYTP
Sbjct: 721 RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTP 780
Query: 781 RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXXXXX-ENK 839
R+FVL PK+KL+VIIE+DQGA TAEEREAA+KECF E+K
Sbjct: 781 RKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDK 840
Query: 840 YDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGT 899
DPLSDEQYGYPKAES+KWVSCIRVLDP++A TTCLLELQDNEAA+S+CTVNFHDKE+GT
Sbjct: 841 EDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGT 900
Query: 900 LLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAG 959
LLAVGT KG+QFWPK+N+VAG+IHIYRFVE+GKSLELLHKTQVEG+PLALCQFQGRLLAG
Sbjct: 901 LLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAG 960
Query: 960 IGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019
IGPVLRLYDLGKKRLLRKCENKLFPNTI+SI TYRDRIYVGDIQESFH+CKYRRDENQLY
Sbjct: 961 IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY 1020
Query: 1020 IFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1079
IFADD VPRWLTA+HH+DFDTMAGADKFGN+YFVRLPQD+S+EIEEDPTGGKIKWEQGKL
Sbjct: 1021 IFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKL 1080
Query: 1080 NGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFS 1139
NGAPNK++EIVQFHVGDVVT LQKAS++PGG ES++YGTVMGS+GA+ AF+SRDDVDFFS
Sbjct: 1081 NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS 1140
Query: 1140 HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
HLEMHMRQE+PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTL +DLQRKIADELDRTP
Sbjct: 1141 HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPA 1200
Query: 1200 EILKKLEEIRNKIV 1213
EILKKLE+ RNKI+
Sbjct: 1201 EILKKLEDARNKII 1214
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 3758 (1327.9 bits), Expect = 0., P = 0.
Identities = 713/1218 (58%), Positives = 927/1218 (76%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++ +
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERG 658
Query: 656 AS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSR 713
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SSR
Sbjct: 659 SIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSR 718
Query: 714 PWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETA 773
WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN+ A
Sbjct: 719 SWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVA 778
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXX 833
PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAAE 837
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F
Sbjct: 838 MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFS 897
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQ 953
+ + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQ
Sbjct: 898 NTGEDWYVLVGVAKDLILSP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQ 956
Query: 954 GRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013
GR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +Y+R
Sbjct: 957 GRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKR 1016
Query: 1014 DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK 1073
+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K
Sbjct: 1017 NENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKAL 1076
Query: 1074 WEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRD 1133
W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +
Sbjct: 1077 WDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHE 1136
Query: 1134 DVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADE 1193
D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++E
Sbjct: 1137 DHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEE 1196
Query: 1194 LDRTPGEILKKLEEIRNK 1211
LDRTP E+ KKLE+IR +
Sbjct: 1197 LDRTPPEVSKKLEDIRTR 1214
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 3757 (1327.6 bits), Expect = 0., P = 0.
Identities = 713/1218 (58%), Positives = 927/1218 (76%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++ +
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERG 658
Query: 656 AS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSR 713
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SSR
Sbjct: 659 SIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSR 718
Query: 714 PWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETA 773
WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN+ A
Sbjct: 719 SWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVA 778
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXX 833
PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAAE 837
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F
Sbjct: 838 MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFS 897
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQ 953
+ + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQ
Sbjct: 898 NTGEDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQ 956
Query: 954 GRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013
GR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +Y+R
Sbjct: 957 GRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKR 1016
Query: 1014 DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK 1073
+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K
Sbjct: 1017 NENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKAL 1076
Query: 1074 WEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRD 1133
W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +
Sbjct: 1077 WDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHE 1136
Query: 1134 DVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADE 1193
D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++E
Sbjct: 1137 DHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEE 1196
Query: 1194 LDRTPGEILKKLEEIRNK 1211
LDRTP E+ KKLE+IR +
Sbjct: 1197 LDRTPPEVSKKLEDIRTR 1214
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 3757 (1327.6 bits), Expect = 0., P = 0.
Identities = 713/1218 (58%), Positives = 927/1218 (76%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++ +
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERG 658
Query: 656 AS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSR 713
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SSR
Sbjct: 659 SIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSR 718
Query: 714 PWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETA 773
WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN+ A
Sbjct: 719 SWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVA 778
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXX 833
PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAAE 837
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F
Sbjct: 838 MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFS 897
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQ 953
+ + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQ
Sbjct: 898 NTGEDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQ 956
Query: 954 GRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013
GR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +Y+R
Sbjct: 957 GRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKR 1016
Query: 1014 DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK 1073
+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K
Sbjct: 1017 NENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKAL 1076
Query: 1074 WEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRD 1133
W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +
Sbjct: 1077 WDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHE 1136
Query: 1134 DVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADE 1193
D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++E
Sbjct: 1137 DHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEE 1196
Query: 1194 LDRTPGEILKKLEEIRNK 1211
LDRTP E+ KKLE+IR +
Sbjct: 1197 LDRTPPEVSKKLEDIRTR 1214
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 3756 (1327.2 bits), Expect = 0., P = 0.
Identities = 713/1218 (58%), Positives = 927/1218 (76%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++ +
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERG 658
Query: 656 AS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSR 713
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SSR
Sbjct: 659 SIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSR 718
Query: 714 PWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETA 773
WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN+ A
Sbjct: 719 SWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVA 778
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXX 833
PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAAE 837
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F
Sbjct: 838 MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFS 897
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQ 953
+ + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQ
Sbjct: 898 NTGDDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQ 956
Query: 954 GRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013
GR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +Y+R
Sbjct: 957 GRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKR 1016
Query: 1014 DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK 1073
+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K
Sbjct: 1017 NENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKAL 1076
Query: 1074 WEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRD 1133
W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +
Sbjct: 1077 WDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHE 1136
Query: 1134 DVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADE 1193
D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++E
Sbjct: 1137 DHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEE 1196
Query: 1194 LDRTPGEILKKLEEIRNK 1211
LDRTP E+ KKLE+IR +
Sbjct: 1197 LDRTPPEVSKKLEDIRTR 1214
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 3743 (1322.7 bits), Expect = 0., P = 0.
Identities = 713/1219 (58%), Positives = 923/1219 (75%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY++TLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
+RSL FRLTG KDY+VVGSDSGRIVILEY+PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VVRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMIGA EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SE ++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFKVTLE D E V+E+++KYFDTIPV +MCVLK+G+LF +SEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++ ESL PIM +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRS+LR+LR GL VSEMAVS+LPG P+AVWTV+++V DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+G+D+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TI++ N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ V +D
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM-GGVEKQDELGEK 657
Query: 656 AS---LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSS 712
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SS
Sbjct: 658 GTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSS 717
Query: 713 RPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNET 772
R WL Y ++ RF LTPLSYETLEYA+ F+S+QC EG+V+++ N LR+ +E+LG FN+
Sbjct: 718 RSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQV 777
Query: 773 ALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXX 832
A PL+YTPR+FV+ P+ +++IETD A T E +A +K+
Sbjct: 778 AFPLQYTPRKFVIHPETNNLILIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAA 836
Query: 833 XXXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNF 892
+ L + +G PKA S +W S +R+++P NT L++L+ NEAAFS+ F
Sbjct: 837 EMAAAFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAICRF 896
Query: 893 HDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF 952
+ + VG A+ + P R++ GYI+ YR V G LE LHKT VE +PLA+ F
Sbjct: 897 LNGGDDWYVLVGVARDMILNP-RSVGGGYIYTYRIVGGGDKLEFLHKTPVEDVPLAIAPF 955
Query: 953 QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYR 1012
QGR+L G+G +LR+YDLGKK+LLRKCENK PN + I+T R+ V D+QES + +YR
Sbjct: 956 QGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYR 1015
Query: 1013 RDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKI 1072
R+ENQL IFADD+ PRW+T A +D+DTMA ADKFGNI VRLP + SD+++EDPTG K
Sbjct: 1016 RNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKA 1075
Query: 1073 KWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSR 1132
W++G LNGA K E I+ +H+G+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S
Sbjct: 1076 LWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSH 1135
Query: 1133 DDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIAD 1192
+D DFF HLEMHMR E PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ Q+ +++
Sbjct: 1136 EDHDFFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSE 1195
Query: 1193 ELDRTPGEILKKLEEIRNK 1211
ELDRTP E+ KKLE+IR +
Sbjct: 1196 ELDRTPPEVSKKLEDIRTR 1214
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 3730 (1318.1 bits), Expect = 0., P = 0.
Identities = 717/1229 (58%), Positives = 927/1229 (75%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKNVF+KIHQETFGKSGCRRIVPGQY
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G PD+R IPRR DL ERG++ V +ATH+ K++FF
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L E
Sbjct: 361 IAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV+++V DEFDAYI+VSF
Sbjct: 419 DTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+T
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKT 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP G
Sbjct: 539 PGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHP 655
+RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++ +
Sbjct: 599 EQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERG 658
Query: 656 AS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSR 713
+ L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +SSR
Sbjct: 659 SIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSR 718
Query: 714 PWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETA 773
WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN+ A
Sbjct: 719 SWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVA 778
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXX 833
PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 779 FPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERELAAE 837
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F
Sbjct: 838 MAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFS 897
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKS----------LELLHKTQVE 943
+ + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE
Sbjct: 898 NTGEEWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNGGEXTYKLVNGGEKLEFLHKTPVE 956
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKL-FPNTIVSINTYRDRIYVGDI 1002
+P A+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+
Sbjct: 957 EVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKKHIANYICGIQTIGHRVIVSDV 1016
Query: 1003 QESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDE 1062
QESF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE
Sbjct: 1017 QESFIWVRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDE 1076
Query: 1063 IEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGS 1122
++EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G
Sbjct: 1077 VDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGG 1136
Query: 1123 LGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTL 1182
+G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1137 IGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSM 1196
Query: 1183 SLDLQRKIADELDRTPGEILKKLEEIRNK 1211
+ Q+ +A+ELDRTP E+ KKLE+IR +
Sbjct: 1197 EPNKQKNVAEELDRTPPEVSKKLEDIRTR 1225
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 3575 (1263.5 bits), Expect = 0., P = 0.
Identities = 695/1229 (56%), Positives = 897/1229 (72%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
MYLY+LTLQ+ TG+ A++GNFSG K E++++RGK LELLRP+ N+G++ TL+STEIFG
Sbjct: 1 MYLYNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKVHTLLSTEIFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
+R+L FRLTG KDYIVVGSDSGRIVILEYNPSKN +K+HQETFGKSGCRRIVPGQY
Sbjct: 61 CVRALMAFRLTGGTKDYIVVGSDSGRIVILEYNPSKNALEKVHQETFGKSGCRRIVPGQY 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
A+DPKGRAVMIGA EKQKL Y++NRDT ARLTISSPLEAHKS+T+ Y + G+D GFDNP
Sbjct: 121 FAIDPKGRAVMIGAVEKQKLAYIMNRDTQARLTISSPLEAHKSNTLTYHMVGVDVGFDNP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+ A +E+DY EAD D +G AA Q+ LTFYELDLGLNHV RK+SEP++ AN LV+VPG
Sbjct: 181 MLACLEIDYEEADMDPSGDAAQRTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLVSVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQGHP-DVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLFF 296
G DGPSGVL+C+EN++ YKN G D+R IPRR DL ERG++ + +ATHR K+++F
Sbjct: 241 GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSMYF 300
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FLLQTE GDIFK+TLE D++ VSE+K+KYFDT+P +MCVLK+G+LF ASEFGNH LYQ
Sbjct: 301 FLLQTEQGDIFKITLETDDDVVSEIKLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQ 360
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+G D D E S+ M EEG + FF PR LKNLV ++++ S PI+ ++A+L E
Sbjct: 361 IAHLGDDDD-EPEFSSAMPLEEG-ETFFFAPRALKNLVLVDELPSFAPIITSQVADLANE 418
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
+ PQ++ LCGRGPRS+LR+LR GL VSEMAVS+LPG P+AVWTVKK +DEFDAYI+VSF
Sbjct: 419 DTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAYIIVSF 478
Query: 477 NNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRT 536
NATLVLSIGETVEEV+DSGFL TTP+L + +GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 479 VNATLVLSIGETVEEVTDSGFLGTTPTLCCAALGDDALVQVYPDGIRHIRSDKRVNEWKA 538
Query: 537 PGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPEG 595
PGK++I K N+ QVVI LSG EL+YFE+D TG+L E E+ EM ++ C+ + +VPEG
Sbjct: 539 PGKKSITKCAVNQRQVVITLSGRELVYFEMDPTGELNEYTERSEMPAEIMCMALGTVPEG 598
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEV----QASVGGEDG 651
+RS FLAVG DNT+RILSLDP++C+ S+Q++ SP ESL +E+ + GG D
Sbjct: 599 EQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTESTTQGGLDD 658
Query: 652 ADHPA--------SLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGG 703
D PA +++LN GL NGVL RTV+D V+G L+D+R+R+LG RP KLF + + G
Sbjct: 659 -DAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQG 717
Query: 704 RAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIE 763
A+L +SSR WL Y H+ RF LTPLSYETLEYA+ FSS+QC EG+V+++ N LR+ +E
Sbjct: 718 SEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALE 777
Query: 764 RLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXX 823
+LG FN+ A PL+YTPR FV+ P M+I ETD A T E+ ++A+KE
Sbjct: 778 KLGAVFNQVAFPLQYTPRTFVIHPDTGRMLIAETDHNAYT-EDTKSARKEQMAEEMRSAA 836
Query: 824 XXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEA 883
+ L ++ + PKA W S IR LD T + L NEA
Sbjct: 837 GDEERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSVPLTQNEA 896
Query: 884 AFSICTVNFHDKEHGTL-LAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQV 942
S+ + F G LAVG AK LQ P+ + G I IY+ SLE +H+T +
Sbjct: 897 IMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRIS-QGGCIDIYKIDPTCSSLEFMHRTDI 955
Query: 943 EGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDI 1002
+ IP ALC FQGRLLAG G +LR+YD GKK++LRKCENK P IV+I R+YV D+
Sbjct: 956 DEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQIVNIQAMGHRVYVSDV 1015
Query: 1003 QESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDE 1062
QES F +YRR ENQL IFADD+ PRW+TA +D+DT+A ADKFGN+ RLP V+D+
Sbjct: 1016 QESVFFIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDD 1075
Query: 1063 IEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGS 1122
++EDPTG K W++G L+GA K E I FHVG+++ SLQKA+L+PGG E++IY T+ G+
Sbjct: 1076 VDEDPTGTKSLWDRGLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGT 1135
Query: 1123 LGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTL 1182
+GA + F+SR+D DFF HLEMHMR E+PPLCGRDH++YRS+Y+PVK+V+DGDLCEQ+ ++
Sbjct: 1136 VGAFVPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLCEQYLSI 1195
Query: 1183 SLDLQRKIADELDRTPGEILKKLEEIRNK 1211
Q+ IA ++ RTP +I KKLE+IR +
Sbjct: 1196 EAAKQKSIAGDMFRTPNQICKKLEDIRTR 1224
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 3154 (1115.3 bits), Expect = 0., P = 0.
Identities = 620/1227 (50%), Positives = 840/1227 (68%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGT-KTPEIVVARGKVLELLRPEN-SGRIETLVSTEIF 58
M+LY+LTLQ + I AI GNFSGT K EIVV RG LELL + +G+I+ + +IF
Sbjct: 1 MHLYNLTLQGQSAINQAIQGNFSGTPKAQEIVVGRGSALELLTLDTVTGKIKVMCHQDIF 60
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQ 118
G +RSL FRLT +D+I VGSDSGRIVIL+YN K F+++HQETFGK+GCRRIVPG
Sbjct: 61 GIVRSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAEKTCFERLHQETFGKTGCRRIVPGH 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDN 178
+L DP+GRA+MIGA E+QKLVY++NRD+ A LTISSPLEAHK HT+ Y++ GID GF+N
Sbjct: 121 FLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHHTLCYAMVGIDVGFEN 180
Query: 179 PIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVP 238
P FA +E DY +AD D TG+AA Q+ LTFYELDLGLNHV RK++EP+++ N+L+ VP
Sbjct: 181 PTFACLEFDYEDADNDPTGEAAKRTQQTLTFYELDLGLNHVVRKYAEPLNDPGNLLIAVP 240
Query: 239 GGGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-AERGVLIVSAATHRQKTLF 295
GG DGPSGV+VC EN+++YKN G PD+R IPRR +L A+R +LI++ ATH+ K ++
Sbjct: 241 GGNDGPSGVIVCCENYLVYKNLGDQPDIRCPIPRRRNELDDADRTMLIIATATHKTKNMY 300
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL+Q E GDIFKVTLE D + VSE+K+KYFDT+P ++C+LKSG+LF A+EFGNH LY
Sbjct: 301 FFLVQAENGDIFKVTLETDEDLVSEMKLKYFDTVPPANALCILKSGFLFVAAEFGNHELY 360
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q ++G D E SS+ M E FF+P LK+L+ I+ ++SL P+ D I ++
Sbjct: 361 QIASLGEGDDDEFSSA--MGFGEN-DAAFFEPHELKSLIPIDSMDSLSPLTDAVIGDIAR 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+A QI++L GRG RSSL++LR GL +SEMAVS LPG P+AVWTVKKN+ D++D+YIVVS
Sbjct: 418 EDAAQIYSLVGRGARSSLKVLRNGLEISEMAVSDLPGNPNAVWTVKKNIEDQYDSYIVVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATL L+IG+TVEE SDSGFL TTP++ ++IGDDSL+Q++ GIRHIR D RINEW+
Sbjct: 478 FVNATLALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIYSEGIRHIRADKRINEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
P +R IVK NR QV +AL+GGEL+YFE+D+ G L E E+ + D+AC+ + + E
Sbjct: 538 APPRRQIVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFTERKLFNADIACMTFSEISE 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G SRFLA+G+ DN +RI+SLDP+D + LS QS+ PPES+L ++ EDG
Sbjct: 598 GELNSRFLALGTVDNAVRIISLDPNDMLMPLSTQSLPCPPESILLIDTP----NEDGKG- 652
Query: 655 PASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRP 714
A++ LN GLQNG LFR VD VTG + D+R+R+LG RP KLF V GR+A+LC SSR
Sbjct: 653 VAAVHLNIGLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKVQCQGRSAILCTSSRS 712
Query: 715 WLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETAL 774
WL Y + RF LTPLSY LEYAASF S+QC EG+V+++ + LR+ E+LG FN +
Sbjct: 713 WLLYHFQRRFHLTPLSYANLEYAASFCSNQCSEGIVAISASTLRIIAAEKLGVAFNVQSF 772
Query: 775 PLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXXXXXX 834
+ TPRR + P +++IETD + T E + K+
Sbjct: 773 EHKMTPRRVAVHPSMPCLIVIETDHASYT-EVTKNIKRNQMAADVEAMASDETEAQLAQE 831
Query: 835 XXENKYDPLSDEQ-YGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNF- 892
N + DE+ YG P+A KW S I ++ S + EL +E A + V F
Sbjct: 832 IATNLRERRLDERVYGAPRAARGKWASAISLISATSGDKLSYFELPQDENAKCVALVQFS 891
Query: 893 -HDKEHGTLLAVGTAKGLQFW---PKRNIVA---GYIHIYRFVEEGKSLELLHKTQVEGI 945
H E L+ G + L P + G ++ + G + LH+T+ +
Sbjct: 892 KHPNEAMVLVGCGVNEVLNVHDIDPNDTSIRPTRGCVYTFHLSANGDRFDFLHRTETP-L 950
Query: 946 PL-ALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
P+ A+ F+G L G G LR+YD+G+K+LL KCENK FP +IV+I + RI V D QE
Sbjct: 951 PVGAIHDFRGMALVGFGRFLRMYDIGQKKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQE 1010
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
S HF +YR+ +NQL +FADD+ PR++T +D+ T+A ADKFGN+ VRLP+ V+++++
Sbjct: 1011 SVHFLRYRKGDNQLVVFADDTTPRYVTCVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQ 1070
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
+DPT K W++G LNGA K+E + F +GD +TSLQK SL+PG E+++Y T+ G++G
Sbjct: 1071 DDPTVSKSVWDRGWLNGASQKVELVSNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIG 1130
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
+++F S+D+VDFF++LEMH+R E+PPLCGRDH+AYRS Y P K VIDGD+CEQF +
Sbjct: 1131 CLVSFMSKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYYAPCKSVIDGDICEQFSLMDT 1190
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
Q+ +A+EL +T EI KKLE+IR +
Sbjct: 1191 QKQKDVAEELGKTVSEISKKLEDIRTR 1217
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 3038 (1074.5 bits), Expect = 8.7e-317, P = 8.7e-317
Identities = 615/1229 (50%), Positives = 824/1229 (67%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M++YSLT+Q PT I AI G F+GTK +IV A G L + RP+ G++ L + ++FG
Sbjct: 7 MFMYSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR+LA FRL GS KDYI++GSDSGRI I+EY PS+N F++IH ETFGKSG RR+VPGQY
Sbjct: 67 IIRTLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRVVPGQY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRA +I + EK KLVYVLNR++ A LTISSPLEAHK T+VYS+ +D G++NP
Sbjct: 127 LAVDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTLVYSVVALDAGYENP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FAA+E+DYSE+DQD TG+A E +K L +YELDLGLNHV RKW++PVD ++ML VPG
Sbjct: 187 VFAALEVDYSESDQDPTGRAYEEVEKLLVYYELDLGLNHVVRKWTDPVDRTSSMLFQVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRR--ADLPAERGVLIVSAATHRQKTLFFF 297
G DGPSGVLVCAE+ + Y++ R IPRR A ER I + H+ + FFF
Sbjct: 247 GADGPSGVLVCAEDNITYRHSNQDAFRVPIPRRKGAMENPERKRCITAGVMHKMRGAFFF 306
Query: 298 LLQTEYGDIFKVTLE--HDNE-----HVSELKIKYFDTIPVTASMCVLKSGYLFAASEFG 350
LLQTE GD+FK+TL+ D++ V LKIKYFDT+P+ +S+ +LKSG+L+ A+E G
Sbjct: 307 LLQTEDGDLFKLTLDMVEDDKGQLTGEVKGLKIKYFDTVPLASSLLILKSGFLYVAAEGG 366
Query: 351 NHALYQFQAIGADPD-VEASSSTLM-ETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDM 408
NH YQF+ +G D + E +S + PV+FQPRG +NL +E + SL P++D
Sbjct: 367 NHHFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDS 426
Query: 409 RIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEF 468
++ N+ E++APQIFT+ G G RS+ R L+ GL VSE+ S+LP VPSAVWT K DEF
Sbjct: 427 KVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEF 486
Query: 469 DAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIRED 528
DAYIV+SF N TLVLSIGETVEEV+D+GFL + P+LAV +G+DSL+Q+HP GIRHI D
Sbjct: 487 DAYIVLSFANGTLVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHILAD 546
Query: 529 GRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EKHEMSGDVACL 587
R+NEW P R+IV +N QV +ALS GE++YFE+D G L E E+ +MSG V CL
Sbjct: 547 RRVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDADGSLAEYDERRQMSGTVTCL 606
Query: 588 DIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVG 647
+ VPEGR RS FLAVG D+T+RILSLDPD ++ SVQ++++ P +L + + S
Sbjct: 607 SLGEVPEGRVRSSFLAVGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAMADSSS 666
Query: 648 GEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAM 707
G G +L+L+ GL +GV RT +D VTG+LSD+R+RFLG + KLF V V G+ A+
Sbjct: 667 G--GT----TLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTAV 720
Query: 708 LCLSSRPWLGYIH---RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIER 764
L LSSRPWLGY +G F+LTPL Y LE+ +FSS+QCVEG+V + G LR+F+IE+
Sbjct: 721 LALSSRPWLGYSDTQTKG-FMLTPLDYVGLEWGWNFSSEQCVEGMVGIQGQNLRIFSIEK 779
Query: 765 LGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXX 824
L + ++PL YTPR F+ P++ L +IE D L+ R ++
Sbjct: 780 LDNNMLQQSIPLAYTPRHFIKHPEEPLFYVIEADNNVLSPATRARLLEDSKARGGDTTV- 838
Query: 825 XXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC-LLELQDNEA 883
L E +GYP+ + W SCI+++DP A +EL++NEA
Sbjct: 839 ------------------LPPEDFGYPRG-TGHWASCIQIIDPLDAKAVVGAVELEENEA 879
Query: 884 AFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVE 943
A SI V F ++ T L VGTAK + P + GYIHIYRF E+GK LE +HKT+VE
Sbjct: 880 AVSIAAVPFTSQDDETFLVVGTAKDMTVNPPSS-AGGYIHIYRFQEDGKELEFIHKTKVE 938
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQ 1003
PLAL FQGRLLAG+G VLR+YDLG K+LLRKC+ + P IV + T RI V D++
Sbjct: 939 EPPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAIVGLQTQGSRIVVSDVR 998
Query: 1004 ESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEI 1063
ES + Y+ +N L F DDS+ RW TAA +D++T AG DKFGN++ VR P+ S+E
Sbjct: 999 ESVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWLVRCPKKASEEA 1058
Query: 1064 EEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSL 1123
+E+ +G + ++G L G PN++E ++ D+ TSL K LV GG + +++ G++
Sbjct: 1059 DEEGSGAHLIHDRGYLQGTPNRLELMIHVFTQDIPTSLHKTQLVAGGRDILVWTGFQGTI 1118
Query: 1124 GAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLS 1183
G ++ F SR+DVDFF LEM + + PPL GRDH+ YRS Y PVK VIDGDLCEQ+ LS
Sbjct: 1119 GILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHLIYRSYYAPVKGVIDGDLCEQYFLLS 1178
Query: 1184 LDLQRKIADELDRTPGEILKKLEEIRNKI 1212
D + IA ELDR+ EI +K+ ++R ++
Sbjct: 1179 NDTKMMIAAELDRSVREIERKISDMRTRV 1207
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 1836 (651.4 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 353/599 (58%), Positives = 465/599 (77%)
Query: 221 RKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRRA-DLP-A 277
RK+SEP++ N L+TVPGG DGPSGVL+C+EN++ YKN G PD+R IPRR DL
Sbjct: 2 RKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP 61
Query: 278 ERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCV 337
ERG++ V +ATH+ K++FFFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCV
Sbjct: 62 ERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCV 121
Query: 338 LKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIE 397
LK+G+LF ASEFGNH LYQ +G D D E S+ M EEG FFQPR LKNLV ++
Sbjct: 122 LKTGFLFVASEFGNHYLYQIAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVD 179
Query: 398 QVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAV 457
+++SL PI+ +IA+L E+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AV
Sbjct: 180 ELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAV 239
Query: 458 WTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQV 517
WTV++++ DEFDAYI+VSF NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV
Sbjct: 240 WTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV 299
Query: 518 HPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VE 576
+P GIRHIR D R+NEW+TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E
Sbjct: 300 YPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTE 359
Query: 577 KHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPES 636
+ EMS DV C+ +A+VP G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PES
Sbjct: 360 RKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPES 419
Query: 637 LLFLEVQASVGGEDGADHPAS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPP 694
L +E+ + ++ + + L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP
Sbjct: 420 LCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPV 479
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAG 754
KLF V + G+ A+L +SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++
Sbjct: 480 KLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAIST 539
Query: 755 NALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKE 813
N LR+ +E+LG FN+ A PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 540 NTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQ 597
Score = 959 (342.6 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 168/297 (56%), Positives = 228/297 (76%)
Query: 915 RNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL 974
R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQGR+L G+G +LR+YDLGKK+L
Sbjct: 603 RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKL 662
Query: 975 LRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAH 1034
LRKCENK N I I T R+ V D+QESF + +Y+R+ENQL IFADD+ PRW+T A
Sbjct: 663 LRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTAS 722
Query: 1035 HIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHV 1094
+D+DT+AGADKFGNI VRLP + +DE++EDPTG K W++G LNGA K E I+ +HV
Sbjct: 723 LLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHV 782
Query: 1095 GDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCG 1154
G+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCG
Sbjct: 783 GETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCG 842
Query: 1155 RDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 1211
RDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 843 RDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 899
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 1392 (495.1 bits), Expect = 3.1e-287, Sum P(2) = 3.1e-287
Identities = 274/559 (49%), Positives = 384/559 (68%)
Query: 657 SLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWL 716
SLFL GL+NGV+ R +D VTG+LSD R+R LG +P KLF V V G AML LSSR WL
Sbjct: 700 SLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWL 759
Query: 717 GYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPL 776
YI++G+ + PLS E LE A++ SS+Q E +V+ + N + +F+I++LG+ FN+ + L
Sbjct: 760 NYINQGKLDIVPLSIEPLENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKL 819
Query: 777 RYTPRRFVLQPKKKLMVIIETDQGALTAE---EREAAKKECFXXXXXXXXXXXXXXXXXX 833
TP+RF++ P+ ++I+ET+ T ++ + E
Sbjct: 820 NATPKRFIIHPQTSYIIILETETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDD 879
Query: 834 XXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893
N+ +P ++ PKA KW S I+++DP + + L L+D EA FS+CT +F
Sbjct: 880 QNNNNEIEPF--KKLFKPKAGKGKWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFG 937
Query: 894 DKEHGTL-LAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF 952
E G + L VG + PK + A ++++YRF++ GK LELL+KT+VE A+ QF
Sbjct: 938 --ESGEIFLVVGCVTDMVLNPKSHKSA-HLNLYRFIDGGKKLELLYKTEVEEPVYAMAQF 994
Query: 953 QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYR 1012
QG+L+ G+G +R+YD+GKK+LLRKCE K PNTIV+I++ DR+ VGDIQES HF KY+
Sbjct: 995 QGKLVCGVGKSIRIYDMGKKKLLRKCETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYK 1054
Query: 1013 RDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKI 1072
R EN LY+FADD PRW+T++ +D+DT+AGADKFGNI+ +RLP +SDE+EEDPTG K+
Sbjct: 1055 RSENMLYVFADDLAPRWMTSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKL 1114
Query: 1073 KWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSR 1132
K+E G LNGAP+K++ I F VGD VT+L K SLV GG E ++Y T+ G++GA++ F+SR
Sbjct: 1115 KFESGTLNGAPHKLDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSR 1174
Query: 1133 DDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIAD 1192
+DVDFFS LEM+MR + PLCGRDH+AYRS YFPVK++IDGDLCEQF TL+ Q I++
Sbjct: 1175 EDVDFFSTLEMNMRSDCLPLCGRDHLAYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISE 1234
Query: 1193 ELDRTPGEILKKLEEIRNK 1211
EL R+P E++KKLEEIR++
Sbjct: 1235 ELSRSPSEVIKKLEEIRSQ 1253
Score = 1391 (494.7 bits), Expect = 3.1e-287, Sum P(2) = 3.1e-287
Identities = 267/484 (55%), Positives = 364/484 (75%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MYLY+LTLQ+PT + +I+GNFSGTK EIV+ G+ LEL+R + +G++++++ TE+FG
Sbjct: 1 MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGI 60
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
+RS+ FRLT KDYI+VGSDSGR+VILEYN KN FDKIHQETFG+SGCRRIVPGQYL
Sbjct: 61 VRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCRRIVPGQYL 120
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
AVDPKGRA MIGA EKQKLVY+LNRD++A LTISSPLEAHKS+TIV+S+CG+D GFDNPI
Sbjct: 121 AVDPKGRAFMIGAIEKQKLVYILNRDSSANLTISSPLEAHKSNTIVFSMCGVDVGFDNPI 180
Query: 181 FAAIELDYSEADQDSTG-----------QAASEAQKNLTFYELDLGLNHVSRKWSEPVDN 229
FA I +DY+E D S G + + +K LT+YELDLGLN+V RKWS+ VD+
Sbjct: 181 FATISVDYTEEDSSSGGGGGGSIEEMMDEDIGKKKKLLTYYELDLGLNNVVRKWSDQVDD 240
Query: 230 GANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATH 289
AN+++TVPGG +GP GVLV +E++++Y+NQ H +VR+ IPRR +GVLI+S ++H
Sbjct: 241 SANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAEVRSRIPRRYGSDPNKGVLIISHSSH 300
Query: 290 RQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEF 349
+QK +FFFL+Q+E+GD++K+TL++ + VSE+ + YFDTI + + VLK+G+LFAASEF
Sbjct: 301 KQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFDTIVLANCLTVLKNGFLFAASEF 360
Query: 350 GNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRG--------LKNLVRIEQVES 401
G+H LY F++IG D + E + L E ++G ++F PR LKNL + S
Sbjct: 361 GDHTLYFFKSIG-DEEEEGQAKRL-EDKDGH--LWFTPRNSCGTKMEELKNLEPTSHLSS 416
Query: 402 LMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVK 461
L PI+D ++ +L EE PQ+++LCG G SSL++LR GL+V+ + + LPGVPS +WTV
Sbjct: 417 LSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTVP 476
Query: 462 KNVN 465
K+ +
Sbjct: 477 KSTS 480
Score = 1139 (406.0 bits), Expect = 1.4e-260, Sum P(2) = 1.4e-260
Identities = 219/458 (47%), Positives = 326/458 (71%)
Query: 204 QKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHP 263
+K LT+YELDLGLN+V RKWS+ VD+ AN+++TVPGG +GP GVLV +E++++Y+NQ H
Sbjct: 215 KKLLTYYELDLGLNNVVRKWSDQVDDSANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHA 274
Query: 264 DVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKI 323
+VR+ IPRR +GVLI+S ++H+QK +FFFL+Q+E+GD++K+TL++ + VSE+ +
Sbjct: 275 EVRSRIPRRYGSDPNKGVLIISHSSHKQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNV 334
Query: 324 KYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPV 383
YFDTI + + VLK+G+LFAASEFG+H LY F++IG D + E + L E ++G +
Sbjct: 335 NYFDTIVLANCLTVLKNGFLFAASEFGDHTLYFFKSIG-DEEEEGQAKRL-EDKDGH--L 390
Query: 384 FFQPRG--------LKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRI 435
+F PR LKNL + SL PI+D ++ +L EE PQ+++LCG G SSL++
Sbjct: 391 WFTPRNSCGTKMEELKNLEPTSHLSSLSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKV 450
Query: 436 LRPGLAVSEMAVSQLPGVPSAVWTVKK----NVNDEFDAYIVVSFNNATLVLSIGETVEE 491
LR GL+V+ + + LPGVPS +WTV K N D+ D YIVVSF T VLS+G+T++E
Sbjct: 451 LRHGLSVTTITTANLPGVPSGIWTVPKSTSPNAIDQTDKYIVVSFVGTTSVLSVGDTIQE 510
Query: 492 VSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQ 551
+SG L+TT +L V +GDD+++QV P+G RHI+ D RINEWR PG++TIV+ +N+ Q
Sbjct: 511 NHESGILETTTTLLVKSMGDDAIIQVFPTGFRHIKSDLRINEWRAPGRKTIVRASANQSQ 570
Query: 552 VVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTI 611
+ IALSGGE+IYFE+D L+E+ K ++ D+AC++I+ +P+GR +RF+AV ++ I
Sbjct: 571 LAIALSGGEIIYFELDQASNLIEIIKKDLRRDIACIEISPIPKGRNMARFIAVSDWEGPI 630
Query: 612 RILSLDPDDCM-QILSVQSVSSPPESLLFLEVQASVGG 648
R+LSLD D+C+ Q+ + + ESL +E+Q + G
Sbjct: 631 RVLSLDRDNCLGQVSMLDTDKVYIESLSIIEMQLNEMG 668
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 2666 (943.5 bits), Expect = 2.3e-277, P = 2.3e-277
Identities = 506/921 (54%), Positives = 677/921 (73%)
Query: 294 LFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHA 353
+FFFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH
Sbjct: 1 MFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHY 60
Query: 354 LYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANL 413
LYQ +G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L
Sbjct: 61 LYQIAHLG-DDDEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADL 118
Query: 414 FEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIV 473
E+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+
Sbjct: 119 ANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYII 178
Query: 474 VSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINE 533
VSF NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NE
Sbjct: 179 VSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNE 238
Query: 534 WRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASV 592
W+TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+V
Sbjct: 239 WKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANV 298
Query: 593 PEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGA 652
P G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ + ++
Sbjct: 299 PPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELG 358
Query: 653 DHPAS--LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCL 710
+ + L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L +
Sbjct: 359 ERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAM 418
Query: 711 SSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFN 770
SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG FN
Sbjct: 419 SSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFN 478
Query: 771 ETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXXX 830
+ A PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 479 QVAFPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAPGEDEREL 537
Query: 831 XXXXXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTV 890
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+
Sbjct: 538 AAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVC 597
Query: 891 NFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALC 950
F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+
Sbjct: 598 RFSNTGEDWYVLVGVAKDLILSP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIA 656
Query: 951 QFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCK 1010
FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +
Sbjct: 657 PFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVR 716
Query: 1011 YRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGG 1070
Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG
Sbjct: 717 YKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGN 776
Query: 1071 KIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFS 1130
K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+
Sbjct: 777 KALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFT 836
Query: 1131 SRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKI 1190
S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +
Sbjct: 837 SHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNV 896
Query: 1191 ADELDRTPGEILKKLEEIRNK 1211
++ELDRTP E+ KKLE+IR +
Sbjct: 897 SEELDRTPPEVSKKLEDIRTR 917
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 1306 (464.8 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 262/604 (43%), Positives = 387/604 (64%)
Query: 187 DYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSG 246
D + D + A+K L F+ELDLGLNHV +K P+D A++L+ +PGG GPSG
Sbjct: 223 DKNVKDNKDNDFSLDYAKKVLCFWELDLGLNHVIKKHILPIDITAHLLIPLPGGQQGPSG 282
Query: 247 VLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDI 306
VL+C ENF++YK H D+ PRR ++ ++ + I+ HR K FF L+Q+EYGD+
Sbjct: 283 VLICCENFLVYKKVDHEDIYCAYPRRLEIGQDKNISIICWTMHRIKKFFFILIQSEYGDL 342
Query: 307 FKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDV 366
+K+ ++H++ V E+ KYFDT+P+ S+ VLKSG LF A+EFGNH YQF IG D
Sbjct: 343 YKIEVDHEDGIVKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGNHYFYQFSGIGDDNKQ 402
Query: 367 EASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCG 426
+S + + F+ LKNL ++Q+ SL PI+DM+I + PQI+TLCG
Sbjct: 403 FMCTSNHPLGKNAI--IAFKTNKLKNLYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCG 460
Query: 427 RGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIG 486
RGPRSSLRIL+ GL++ E+A ++LPG P +WT+KK+ E+D YIVVSF TL+L IG
Sbjct: 461 RGPRSSLRILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEIG 520
Query: 487 ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRI-NEWRTPGKRTIVKV 545
E+VEEVSD+ L+ +L ++++ D+S +QV+ +GIRHI +G++ EW P + I
Sbjct: 521 ESVEEVSDTLLLNNVTTLHINILYDNSFIQVYDTGIRHI--NGKVVQEWVAPKNKQIKAA 578
Query: 546 GSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVG 605
SN Q+VI+LSGGELIYFE+D + L+E+ + ++ +V CL I +P R R+ FLAVG
Sbjct: 579 SSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVG 638
Query: 606 SYDNTIRILSLDPDDCMQILSVQSV--SSPPESLLFLEVQASVGGEDGADHPASLFLNAG 663
DN +R+LS++ D + LS + +S P+ + E+ + G + +FLN G
Sbjct: 639 CLDNVVRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDN--GNTMKERNI-IFLNIG 695
Query: 664 LQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGR 723
L GVL R+++D V G LS+ S++LG + K+ V V A+L L + +L Y+H+G+
Sbjct: 696 LNTGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGK 755
Query: 724 FLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRF 783
FL +PL+Y+ LEYA+SF S QC +G V+++ N+LR+F RLGE F++ L L +TPR+
Sbjct: 756 FLYSPLNYDMLEYASSFYSPQCSDGYVAISSNSLRIFRFYRLGEVFSQNILHLTFTPRKI 815
Query: 784 VLQP 787
V P
Sbjct: 816 VPLP 819
Score = 751 (269.4 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 155/381 (40%), Positives = 239/381 (62%)
Query: 837 ENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKE 896
EN+ D ++ G KA KW SCI++++P + + L EAA S+C +
Sbjct: 959 ENE-DEYYYDRIGTFKAGQGKWGSCIKIINPVNLQILDKISLDMEEAALSVCACEL-EAL 1016
Query: 897 HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRL 956
H L VGT L K ++ + + +Y + + K L LLH T +E P C + G+L
Sbjct: 1017 H--CLIVGTTTNLSLKTK-SLTSASLRVYTYDIQYK-LNLLHITPIEEQPYCFCSYNGKL 1072
Query: 957 LAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDEN 1016
+A IG LR+Y LGKK+LL+KCE K P IVSI +RI+ DI+ES Y ++N
Sbjct: 1073 IASIGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQN 1132
Query: 1017 QLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK-WE 1075
L + +DD +PRW+T + +D T+ ADKF +++ +R+P+ E ++D G K W
Sbjct: 1133 TLRLISDDIIPRWITCSEILDHHTIMAADKFDSVFILRVPE----EAKQDEYGITNKCWY 1188
Query: 1076 QGKL-NGAPN--KMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSR 1132
G++ N + K+E ++ FH+G++VTS+QK L P E +IY T+MG++GA + + ++
Sbjct: 1189 GGEIMNSSTKNRKLEHMMSFHIGEIVTSMQKVRLSPTSSECIIYSTIMGTIGAFIPYDNK 1248
Query: 1133 DDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIAD 1192
++++ HLE+ +R E PPLCGR+H+ +RS Y PV++V+DGDLCEQF +LS D Q+KIA+
Sbjct: 1249 EELELTQHLEIILRTEKPPLCGREHIFFRSYYHPVQNVVDGDLCEQFSSLSYDAQKKIAN 1308
Query: 1193 ELDRTPGEILKKLEEIRNKIV 1213
+L+RTP +IL+KLE+IRNKI+
Sbjct: 1309 DLERTPEDILRKLEDIRNKIL 1329
Score = 631 (227.2 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 117/200 (58%), Positives = 154/200 (77%)
Query: 3 LYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIR 62
LY LTLQ+PT I + GNFSG + EI+VA+G+VLELLR + G++ ++S +IFG IR
Sbjct: 4 LYHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIR 63
Query: 63 SLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAV 122
S++ FRLTGS KDYIV+GSDSGR+VILEYN KN F ++H ET+GK+G RRI+PG+Y+AV
Sbjct: 64 SISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEYIAV 123
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFA 182
DPKGRA+MI A EKQK VY+LNRD LTISSPLEAHKSH+I + + G++ GF+NP+F
Sbjct: 124 DPKGRALMICAVEKQKFVYILNRDNKENLTISSPLEAHKSHSICHDVVGLNVGFENPMFV 183
Query: 183 AIELDYSEADQDSTGQAASE 202
+IE +Y D+ + +E
Sbjct: 184 SIEQNYESLDKQINEELENE 203
Score = 42 (19.8 bits), Expect = 6.0e-57, Sum P(2) = 6.0e-57
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 924 IYRFVEEGKSL-ELLHKT-QVEGIPLALCQFQ-GRLLAG---IG---PVLRLYDLGKKRL 974
IY ++E +L E+ K VE + L++ Q R+ A +G V+RL + K +
Sbjct: 595 IYFEIDESHTLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNVVRLLSIEKDKY 654
Query: 975 LRKCENKLFPN 985
++ L PN
Sbjct: 655 FKQLSTHLLPN 665
Score = 41 (19.5 bits), Expect = 2.0e-70, Sum P(2) = 2.0e-70
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 66 QFRLTGSQKDYIVVGSDSGRIVILEYNPSKN---VFDK-IHQETFGKSGCRRIVPGQ--- 118
Q + S IV+ G ++ E + S +F K ++ E S ++I P +
Sbjct: 574 QIKAASSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLS-IQQIPPNRVRA 632
Query: 119 -YLAVDPKGRAVMIGACEKQK 138
+LAV V + + EK K
Sbjct: 633 NFLAVGCLDNVVRLLSIEKDK 653
Score = 39 (18.8 bits), Expect = 3.3e-70, Sum P(2) = 3.3e-70
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 546 GSNRLQVVIALSGGELIYFE 565
GSN+ +VI G L+ E
Sbjct: 72 GSNKDYIVIGSDSGRLVILE 91
Score = 37 (18.1 bits), Expect = 5.3e-70, Sum P(2) = 5.3e-70
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 261 GHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVT--LEHDNEH 317
G +R +IP +G ++ A +QK F ++L + + ++ LE H
Sbjct: 108 GKTGIRRIIPGEYIAVDPKGRALMICAVEKQK--FVYILNRDNKENLTISSPLEAHKSH 164
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 1306 (464.8 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 262/604 (43%), Positives = 387/604 (64%)
Query: 187 DYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSG 246
D + D + A+K L F+ELDLGLNHV +K P+D A++L+ +PGG GPSG
Sbjct: 223 DKNVKDNKDNDFSLDYAKKVLCFWELDLGLNHVIKKHILPIDITAHLLIPLPGGQQGPSG 282
Query: 247 VLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDI 306
VL+C ENF++YK H D+ PRR ++ ++ + I+ HR K FF L+Q+EYGD+
Sbjct: 283 VLICCENFLVYKKVDHEDIYCAYPRRLEIGQDKNISIICWTMHRIKKFFFILIQSEYGDL 342
Query: 307 FKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDV 366
+K+ ++H++ V E+ KYFDT+P+ S+ VLKSG LF A+EFGNH YQF IG D
Sbjct: 343 YKIEVDHEDGIVKEIVCKYFDTVPIGNSISVLKSGSLFVAAEFGNHYFYQFSGIGDDNKQ 402
Query: 367 EASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCG 426
+S + + F+ LKNL ++Q+ SL PI+DM+I + PQI+TLCG
Sbjct: 403 FMCTSNHPLGKNAI--IAFKTNKLKNLYLVDQIYSLSPILDMKIIDAKNTHTPQIYTLCG 460
Query: 427 RGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIG 486
RGPRSSLRIL+ GL++ E+A ++LPG P +WT+KK+ E+D YIVVSF TL+L IG
Sbjct: 461 RGPRSSLRILQHGLSIEELADNELPGKPKYIWTIKKDNLSEYDGYIVVSFEGNTLILEIG 520
Query: 487 ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRI-NEWRTPGKRTIVKV 545
E+VEEVSD+ L+ +L ++++ D+S +QV+ +GIRHI +G++ EW P + I
Sbjct: 521 ESVEEVSDTLLLNNVTTLHINILYDNSFIQVYDTGIRHI--NGKVVQEWVAPKNKQIKAA 578
Query: 546 GSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVG 605
SN Q+VI+LSGGELIYFE+D + L+E+ + ++ +V CL I +P R R+ FLAVG
Sbjct: 579 SSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVG 638
Query: 606 SYDNTIRILSLDPDDCMQILSVQSV--SSPPESLLFLEVQASVGGEDGADHPASLFLNAG 663
DN +R+LS++ D + LS + +S P+ + E+ + G + +FLN G
Sbjct: 639 CLDNVVRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDN--GNTMKERNI-IFLNIG 695
Query: 664 LQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGR 723
L GVL R+++D V G LS+ S++LG + K+ V V A+L L + +L Y+H+G+
Sbjct: 696 LNTGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPALLVLCEKTYLCYMHQGK 755
Query: 724 FLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRF 783
FL +PL+Y+ LEYA+SF S QC +G V+++ N+LR+F RLGE F++ L L +TPR+
Sbjct: 756 FLYSPLNYDMLEYASSFYSPQCSDGYVAISSNSLRIFRFYRLGEVFSQNILHLTFTPRKI 815
Query: 784 VLQP 787
V P
Sbjct: 816 VPLP 819
Score = 751 (269.4 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 155/381 (40%), Positives = 239/381 (62%)
Query: 837 ENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKE 896
EN+ D ++ G KA KW SCI++++P + + L EAA S+C +
Sbjct: 959 ENE-DEYYYDRIGTFKAGQGKWGSCIKIINPVNLQILDKISLDMEEAALSVCACEL-EAL 1016
Query: 897 HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRL 956
H L VGT L K ++ + + +Y + + K L LLH T +E P C + G+L
Sbjct: 1017 H--CLIVGTTTNLSLKTK-SLTSASLRVYTYDIQYK-LNLLHITPIEEQPYCFCSYNGKL 1072
Query: 957 LAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDEN 1016
+A IG LR+Y LGKK+LL+KCE K P IVSI +RI+ DI+ES Y ++N
Sbjct: 1073 IASIGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQN 1132
Query: 1017 QLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIK-WE 1075
L + +DD +PRW+T + +D T+ ADKF +++ +R+P+ E ++D G K W
Sbjct: 1133 TLRLISDDIIPRWITCSEILDHHTIMAADKFDSVFILRVPE----EAKQDEYGITNKCWY 1188
Query: 1076 QGKL-NGAPN--KMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSR 1132
G++ N + K+E ++ FH+G++VTS+QK L P E +IY T+MG++GA + + ++
Sbjct: 1189 GGEIMNSSTKNRKLEHMMSFHIGEIVTSMQKVRLSPTSSECIIYSTIMGTIGAFIPYDNK 1248
Query: 1133 DDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIAD 1192
++++ HLE+ +R E PPLCGR+H+ +RS Y PV++V+DGDLCEQF +LS D Q+KIA+
Sbjct: 1249 EELELTQHLEIILRTEKPPLCGREHIFFRSYYHPVQNVVDGDLCEQFSSLSYDAQKKIAN 1308
Query: 1193 ELDRTPGEILKKLEEIRNKIV 1213
+L+RTP +IL+KLE+IRNKI+
Sbjct: 1309 DLERTPEDILRKLEDIRNKIL 1329
Score = 631 (227.2 bits), Expect = 2.6e-275, Sum P(3) = 2.6e-275
Identities = 117/200 (58%), Positives = 154/200 (77%)
Query: 3 LYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIR 62
LY LTLQ+PT I + GNFSG + EI+VA+G+VLELLR + G++ ++S +IFG IR
Sbjct: 4 LYHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQGKLNVIISKDIFGIIR 63
Query: 63 SLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAV 122
S++ FRLTGS KDYIV+GSDSGR+VILEYN KN F ++H ET+GK+G RRI+PG+Y+AV
Sbjct: 64 SISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEYIAV 123
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFA 182
DPKGRA+MI A EKQK VY+LNRD LTISSPLEAHKSH+I + + G++ GF+NP+F
Sbjct: 124 DPKGRALMICAVEKQKFVYILNRDNKENLTISSPLEAHKSHSICHDVVGLNVGFENPMFV 183
Query: 183 AIELDYSEADQDSTGQAASE 202
+IE +Y D+ + +E
Sbjct: 184 SIEQNYESLDKQINEELENE 203
Score = 42 (19.8 bits), Expect = 6.0e-57, Sum P(2) = 6.0e-57
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 924 IYRFVEEGKSL-ELLHKT-QVEGIPLALCQFQ-GRLLAG---IG---PVLRLYDLGKKRL 974
IY ++E +L E+ K VE + L++ Q R+ A +G V+RL + K +
Sbjct: 595 IYFEIDESHTLVEIFRKNLNVEVLCLSIQQIPPNRVRANFLAVGCLDNVVRLLSIEKDKY 654
Query: 975 LRKCENKLFPN 985
++ L PN
Sbjct: 655 FKQLSTHLLPN 665
Score = 41 (19.5 bits), Expect = 2.0e-70, Sum P(2) = 2.0e-70
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 66 QFRLTGSQKDYIVVGSDSGRIVILEYNPSKN---VFDK-IHQETFGKSGCRRIVPGQ--- 118
Q + S IV+ G ++ E + S +F K ++ E S ++I P +
Sbjct: 574 QIKAASSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVEVLCLS-IQQIPPNRVRA 632
Query: 119 -YLAVDPKGRAVMIGACEKQK 138
+LAV V + + EK K
Sbjct: 633 NFLAVGCLDNVVRLLSIEKDK 653
Score = 39 (18.8 bits), Expect = 3.3e-70, Sum P(2) = 3.3e-70
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 546 GSNRLQVVIALSGGELIYFE 565
GSN+ +VI G L+ E
Sbjct: 72 GSNKDYIVIGSDSGRLVILE 91
Score = 37 (18.1 bits), Expect = 5.3e-70, Sum P(2) = 5.3e-70
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 261 GHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVT--LEHDNEH 317
G +R +IP +G ++ A +QK F ++L + + ++ LE H
Sbjct: 108 GKTGIRRIIPGEYIAVDPKGRALMICAVEKQK--FVYILNRDNKENLTISSPLEAHKSH 164
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 1121 (399.7 bits), Expect = 4.4e-191, Sum P(2) = 4.4e-191
Identities = 230/532 (43%), Positives = 350/532 (65%)
Query: 277 AERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTIPVTASM 335
A G LIVSA H+ K FF+LLQT GD+ K+T+EHD + +V EL++KYFDT+P+ +
Sbjct: 299 ANDGPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQL 358
Query: 336 CVLKSGYLFAASEFGNHALYQFQAIGADPD-VEASSSTLM--ETEEGFQPVFFQPRGLKN 392
+LK+G+LF A+EFGNH LYQF+ +G D D +E +S + E G + V F RGL+N
Sbjct: 359 NILKTGFLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQN 418
Query: 393 LVRIEQVESLMPIMDMRIANLFEE-EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLP 451
L +E++ SL + D + EA Q++T+CGRG SSLR LR GL +E+ S+LP
Sbjct: 419 LSLVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478
Query: 452 GVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGD 511
G P A+WT+K N D +D+YI++SF N TLVLSIGETVEE+SDSGFL + +L +G
Sbjct: 479 GAPIAIWTLKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGR 538
Query: 512 DSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEV--DMT 569
DSL+Q+HP GIR+IR + + +EW+ P +V+ N +Q+V+ALS GEL+YFE+ D+
Sbjct: 539 DSLVQIHPKGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVE 598
Query: 570 G-QLLEV-EKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSV 627
G QL E E+ ++ +V L + V EG +RS F+ + D T+R+LSLD ++ LSV
Sbjct: 599 GGQLNEYQERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSV 658
Query: 628 QSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSR 687
Q++SSP SL + + +V G ++L+L+ GL NGV RTV+D+ +GQL D+R+R
Sbjct: 659 QALSSPANSLCIIPM--NVNGV------STLYLHIGLMNGVYLRTVIDVTSGQLLDTRTR 710
Query: 688 FLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVE 747
FLG R K++ + + + +L +SSR +L Y ++ L+P++Y +++A+SF+S+QC E
Sbjct: 711 FLGPRAVKIYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPE 770
Query: 748 GVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQ 799
G+V++ N L++FT++ L + PL TPR+ V P ++ I+++++
Sbjct: 771 GIVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSER 822
Score = 949 (339.1 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 193/382 (50%), Positives = 262/382 (68%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
++LYSLT+Q + ++ + SG K EIV+A L + + + GR+ +++ FG
Sbjct: 7 LFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR++A RLTG ++DY+VV SDSGRI ILEYN KN I+QETFGKSG RR+VPG+Y
Sbjct: 67 IIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LA+D KGRA MI + EK KLVYVLNRD+ A LTISSPLEAHK++ I + + G+D G+ NP
Sbjct: 127 LAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLDTGYANP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
IFAA+E+DYSE D DST +A + ++K L++YELDLGLNHV ++WS+ VD + ML+ VPG
Sbjct: 187 IFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNSYMLIPVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQG---H--PDVR--AVIPRRADLP--------AERGVLIV 284
G DGPSG LV + ++ Y++ H P +R A P A G LIV
Sbjct: 247 GNDGPSGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSANDGPLIV 306
Query: 285 SAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTIPVTASMCVLKSGYL 343
SA H+ K FF+LLQT GD+ K+T+EHD + +V EL++KYFDT+P+ + +LK+G+L
Sbjct: 307 SAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTGFL 366
Query: 344 FAASEFGNHALYQFQAIGADPD 365
F A+EFGNH LYQF+ +G D D
Sbjct: 367 FVATEFGNHQLYQFENLGIDDD 388
Score = 753 (270.1 bits), Expect = 4.4e-191, Sum P(2) = 4.4e-191
Identities = 158/355 (44%), Positives = 218/355 (61%)
Query: 855 SDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPK 914
S WVS I V D S L DNEAAFS+ F +++ L+A G+A +
Sbjct: 850 SKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRDEFFLVA-GSATNMDL-EC 907
Query: 915 RNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL 974
R G +YRF +EGK LEL+ T+++GIP+AL FQGR+LAG+G LR+YDLG K++
Sbjct: 908 RTCSHGNFRVYRFHDEGKKLELISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKM 967
Query: 975 LRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAH 1034
LRK E P I I RI V D Q S F Y+ ++N L FADD++ RW T
Sbjct: 968 LRKGELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNV 1027
Query: 1035 HIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHV 1094
+D+DT+AG DKFGNI+ +R P+ VS +E+ + K+ E+ LN P+K++ + F
Sbjct: 1028 LVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFT 1087
Query: 1095 GDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCG 1154
D+ TSLQK LV G E +++ ++G++G F +++DV FF LE +R+E PPL G
Sbjct: 1088 NDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAG 1147
Query: 1155 RDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
RDH+AYRS Y PVK VIDGDLCE + +L +Q IA+ELDRT E+ KK+E+ R
Sbjct: 1148 RDHLAYRSYYAPVKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIEDFR 1202
Score = 42 (19.8 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 297 FLLQTEYGDI-FKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKS 340
F E GD+ T E NEH S+ + + + + + +S
Sbjct: 827 FKYAQENGDVGSSYTKEKQNEHTSKSWVSFISVFDMISKKIIHES 871
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 848 (303.6 bits), Expect = 5.7e-142, Sum P(2) = 5.7e-142
Identities = 231/699 (33%), Positives = 375/699 (53%)
Query: 1 MYLYSLTLQQPTGIIAAINGNF----SGTKTPE-IVVARGKVLELLR-PENSGRIETLVS 54
+YLY+LTL+ P+ I++I G F + TK + +V+ L+L E +G++E S
Sbjct: 40 VYLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLELQSS 99
Query: 55 TEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEY-NPSKNVFDKIHQETFGKSGCRR 113
+ G I S+ + L S+ D +V+ SDSG + IL+Y N +K KI QE K+G R
Sbjct: 100 QNLLGIINSIEKICL--SEVDGVVITSDSGNLSILQYDNKTKKFISKI-QEPMTKNGWGR 156
Query: 114 IVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGID 173
G+ LA+DP+ R +++ A EK KL Y + +++ +SSPLEAH + I ++
Sbjct: 157 NYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGSKELSSPLEAHSKQVLCLKIVALN 216
Query: 174 CGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKW-----SEPVD 228
+NP+F A+EL E + + +YELD GLNHV +K S+P+
Sbjct: 217 TDHNNPLFGALEL-------------TPEKKCIINYYELDQGLNHVVKKKPNSSNSDPLP 263
Query: 229 NGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAT 288
N N L+ +PG G++VC N+ Y P + +PRR + +IV+ T
Sbjct: 264 NDVNYLIPLPGH---IGGMVVCGTNWCFYDKLDGPRIYLPLPRRNGQTQDS--IIVNHVT 318
Query: 289 H-RQKTLFFFLLQTEYGDIFKVTLEHD--NEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
H +K FF LLQ GD+FK+T+++D E + + I YFDTIP S+ + K+G+LFA
Sbjct: 319 HVLKKKKFFILLQNALGDLFKLTVDYDFDKEIIKNISITYFDTIPPALSLNIFKNGFLFA 378
Query: 346 ASEFGNHALYQFQAIGAD---PDVEASSSTLMETEEGFQPVF-FQPRGLKNLVRIEQVES 401
+ LYQF+ +G D ++ +SS + V F+ +GL NL I+ +E+
Sbjct: 379 NVLNNDKLLYQFEKLGDDLTEGELVINSSDYESLNSVRESVTSFKLKGLDNLALIDVLET 438
Query: 402 LMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVK 461
L PI D +I + ++ TL S ++ + G+ + + S LP P+ ++T K
Sbjct: 439 LSPITDSKIID------SKLVTLSSH---SYVKSITHGVPTTTLVESPLPITPTDIFTTK 489
Query: 462 KNVNDEFDAYIVVS--FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHP 519
++ D Y+V+S ++ TLVLSIGE VE+V DS F+ P++AV +G S++Q++
Sbjct: 490 LSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVGIASVVQIYS 549
Query: 520 SGIRHIRE-DG--RINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTG-QLLEV 575
+GI+H+R +G + +W P TI +N QV+IALS ++YFE+D T QL+E
Sbjct: 550 NGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEIDATDDQLIEY 609
Query: 576 EKH-EMSGDVACLDIA-SVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSP 633
+ E++ + + I ++ E +S F +G D TI+++SL +C++I S+Q++S+
Sbjct: 610 QDRLEIATTITAMAIQENISE---KSPFAIIGCSDETIQVVSLQEHNCLEIKSLQALSAN 666
Query: 634 PESLLFL-----EVQASVGGEDGADHPASL-FLNAGLQN 666
SL L E +G E+G + +N L N
Sbjct: 667 SSSLKMLKSSGKETHVHIGMENGVYARIKIDTINGNLSN 705
Score = 752 (269.8 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 200/606 (33%), Positives = 329/606 (54%)
Query: 207 LTFYELDLGLNHVSRKW-----SEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQG 261
+ +YELD GLNHV +K S+P+ N N L+ +PG G++VC N+ Y
Sbjct: 237 INYYELDQGLNHVVKKKPNSSNSDPLPNDVNYLIPLPGH---IGGMVVCGTNWCFYDKLD 293
Query: 262 HPDVRAVIPRRADLPAERGVLIVSAATH-RQKTLFFFLLQTEYGDIFKVTLEHD--NEHV 318
P + +PRR + +IV+ TH +K FF LLQ GD+FK+T+++D E +
Sbjct: 294 GPRIYLPLPRRNGQTQDS--IIVNHVTHVLKKKKFFILLQNALGDLFKLTVDYDFDKEII 351
Query: 319 SELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGAD---PDVEASSSTLME 375
+ I YFDTIP S+ + K+G+LFA + LYQF+ +G D ++ +SS
Sbjct: 352 KNISITYFDTIPPALSLNIFKNGFLFANVLNNDKLLYQFEKLGDDLTEGELVINSSDYES 411
Query: 376 TEEGFQPVF-FQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLR 434
+ V F+ +GL NL I+ +E+L PI D +I + ++ TL S ++
Sbjct: 412 LNSVRESVTSFKLKGLDNLALIDVLETLSPITDSKIID------SKLVTLSSH---SYVK 462
Query: 435 ILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS--FNNATLVLSIGETVEEV 492
+ G+ + + S LP P+ ++T K ++ D Y+V+S ++ TLVLSIGE VE+V
Sbjct: 463 SITHGVPTTTLVESPLPITPTDIFTTKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDV 522
Query: 493 SDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIRE-DG--RINEWRTPGKRTIVKVGSNR 549
DS F+ P++AV +G S++Q++ +GI+H+R +G + +W P TI +N
Sbjct: 523 EDSEFVLDQPTIAVQQVGIASVVQIYSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNN 582
Query: 550 LQVVIALSGGELIYFEVDMTG-QLLEVEKH-EMSGDVACLDIA-SVPEGRKRSRFLAVGS 606
QV+IALS ++YFE+D T QL+E + E++ + + I ++ E +S F +G
Sbjct: 583 QQVLIALSNLSVVYFEIDATDDQLIEYQDRLEIATTITAMAIQENISE---KSPFAIIGC 639
Query: 607 YDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQN 666
D TI+++SL +C++I S+Q++S+ SL L+ S G E H ++ G++N
Sbjct: 640 SDETIQVVSLQEHNCLEIKSLQALSANSSSLKMLK---SSGKET---H-----VHIGMEN 688
Query: 667 GVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRA-AMLCLSSRPWLGYIHRGRFL 725
GV R +D + G LS+SR +++G +P L + +L +SS PW+ Y++R F
Sbjct: 689 GVYARIKIDTINGNLSNSRVKYIGSKPVSLSVIKFSNEIEGILAISSAPWISYLYRDSFK 748
Query: 726 LTPLSYETLEYAASF-SSDQCVEGVVSVAGNALRVFTIERLGETFNET------ALPLRY 778
+TPL + +SF S D EG+V + N L +F++ + F+ + LRY
Sbjct: 749 ITPLLEIDITNGSSFISEDIGGEGIVGIKDNNLIIFSVGKEDSVFDPSQDLTIATTKLRY 808
Query: 779 TPRRFV 784
TPR+ +
Sbjct: 809 TPRKMI 814
Score = 598 (215.6 bits), Expect = 5.7e-142, Sum P(2) = 5.7e-142
Identities = 129/372 (34%), Positives = 219/372 (58%)
Query: 846 EQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTL----L 901
E +GY + + + W SCI+V+D +S L+L NE+ S+ V+F+ ++ L
Sbjct: 851 EAFGY-EWKQNSWASCIQVVDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHL 909
Query: 902 AVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG 961
VG P + Y++ ++ + K L+L+HKT+++ IP L FQ +LL G
Sbjct: 910 VVGVCTNQTILPN-SYDKSYLYTFKIGK--KHLQLVHKTELDHIPQVLENFQDKLLVASG 966
Query: 962 PVLRLYDLGKKRLLRKCENKL-FPNTIVSINTYRDRIYVGDIQES-FHFCKYRRDENQLY 1019
+RLYD+G+K+LL+K + F I I +RI + D +S F K+ +NQ
Sbjct: 967 NHIRLYDIGQKQLLKKSTTIIDFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFV 1026
Query: 1020 IFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL 1079
FADD + R +T+ ++D DT+ G DKFGNI+ R+ +D+S + ++D T +K + G L
Sbjct: 1027 PFADDVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWT--ILKTQDGIL 1084
Query: 1080 NGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFS 1139
N P K++ +++FH+GD++TS L G ESVIY + G++G ++ S+ +V+
Sbjct: 1085 NSCPYKLQNLIEFHIGDIITSFNLGCLNLAGTESVIYTGLQGTIGLLIPLVSKSEVELLF 1144
Query: 1140 HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
+L+++M+Q L G+DH+ RS Y P+K+VIDGDL E+F + L+ +I+ +L+++
Sbjct: 1145 NLQLYMQQSQNNLVGKDHLKLRSYYNPIKNVIDGDLLERFLEFDISLKIEISRKLNKSVN 1204
Query: 1200 EILKKLEEIRNK 1211
+I KKL ++RN+
Sbjct: 1205 DIEKKLIDLRNR 1216
>UNIPROTKB|F1NZF7 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0005634 GO:GO:0003676 GeneTree:ENSGT00530000063396
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00819465
Ensembl:ENSGALT00000040057 ArrayExpress:F1NZF7 Uniprot:F1NZF7
Length = 504
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 251/503 (49%), Positives = 347/503 (68%)
Query: 710 LSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETF 769
+SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG F
Sbjct: 1 MSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVF 60
Query: 770 NETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFXXXXXXXXXXXXXX 829
N+ A PL+YTPR+FV+ P+ ++IIETD A T E +A +K+
Sbjct: 61 NQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYT-EATKAQRKQQMAEEMVEAAGEDERE 119
Query: 830 XXXXXXXENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICT 889
+ L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+
Sbjct: 120 LAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAV 179
Query: 890 VNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRF-VEEGKSLELLHKTQVEGIPLA 948
F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A
Sbjct: 180 CRFSNTGEEWYVLVGVAKDLILNP-RSVAGGFVYTYKLLVNGGEKLEFLHKTPVEEVPAA 238
Query: 949 LCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHF 1008
+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF +
Sbjct: 239 IAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIW 298
Query: 1009 CKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPT 1068
+Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPT
Sbjct: 299 VRYKRNENQLIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPT 358
Query: 1069 GGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLA 1128
G K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++
Sbjct: 359 GNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVP 418
Query: 1129 FSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQR 1188
F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+
Sbjct: 419 FTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQK 478
Query: 1189 KIADELDRTPGEILKKLEEIRNK 1211
+A+ELDRTP E+ KKLE+IR +
Sbjct: 479 NVAEELDRTPPEVSKKLEDIRTR 501
>UNIPROTKB|F1S419 [details] [associations]
symbol:LOC100512659 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00530000063396 EMBL:CU915803 EMBL:AEMK01191757
Ensembl:ENSSSCT00000003019 OMA:SHEVIYS Uniprot:F1S419
Length = 319
Score = 783 (280.7 bits), Expect = 3.1e-77, P = 3.1e-77
Identities = 146/291 (50%), Positives = 202/291 (69%)
Query: 843 LSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLA 902
L + +G PKA + +W S IRV++P NT L++L+ NEAAFS+ F + +
Sbjct: 25 LPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGDDWYVL 84
Query: 903 VGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGP 962
VG AK L P R++ G+++ Y+ V G+ LE LHKT VE +P A+ FQGR+L G+G
Sbjct: 85 VGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGK 143
Query: 963 VLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFA 1022
+LR+YDLGKK+LLRKCENK N I I T R+ V D+QESF + +Y+R+ENQL IFA
Sbjct: 144 LLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFA 203
Query: 1023 DDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA 1082
DD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++EDPTG K W++G LNGA
Sbjct: 204 DDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGA 263
Query: 1083 PNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRD 1133
K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +
Sbjct: 264 SQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHE 314
>SGD|S000004513 [details] [associations]
symbol:RSE1 "Protein involved in pre-mRNA splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
Length = 1361
Score = 525 (189.9 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 174/655 (26%), Positives = 325/655 (49%)
Query: 76 YIVVGSDSGRIVILEYNPSKNVF--DKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGA 133
++ + SDSG + I++ + + ++ RR+ P Y+ +DP GR +++ +
Sbjct: 147 FLALTSDSGNLSIVQIIMHAGALRLKTLVNQPLTRTTLRRVSPISYMEIDPNGRCIILSS 206
Query: 134 CEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQ 193
E+ KL +++ D A +L ISSPLE + H + + +D F+NP F +E+D + A Q
Sbjct: 207 VEQNKLCFLV--DYAQKLRISSPLEIIRPHMVTLDMAVVDVNFNNPCFVTLEID-NAATQ 263
Query: 194 DSTGQA--ASEAQKNLTFYELDLGLNHVSR-KWSEPVDNGANMLVTVPGGG-DGPSG--- 246
S E N + D +N + S P + N+ ++ D
Sbjct: 264 LSVHLIFYVLELGLNHIVKKADYLVNPSANFVLSLPDLSRYNITTSLSDNNYDADYDTLF 323
Query: 247 ---VLVCAENFVIYKNQ-GHPDVRAVIPRRADLPAE-RGVLIVSAATHRQKTLFFFLLQT 301
V++ EN ++ K+ G ++ IP+R+ + + V I+S + K FF LLQ+
Sbjct: 324 NPFVVIGFENHILVKDMNGFFSLKVEIPKRSITNSRHKNVTIISGIVQKLKNDFFVLLQS 383
Query: 302 EYGDIFKVTLEHD-NEHVSEL-KIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQA 359
+GD+FK+T+ D N+ L ++ YFDTI + + + K+GYLFA SE N+ L+QF+
Sbjct: 384 NHGDLFKLTVSPDTNDRNRPLVQLSYFDTIQNSHQLHIFKNGYLFALSEMNNNFLFQFEK 443
Query: 360 IGADPDVEASSSTLMETEEGFQPVFFQPR-GLKNLVRIEQVESLMPIMDMRIANLFEEEA 418
+G + + S ++ +++ + + F+P L+NL + Q +L P + +I + ++
Sbjct: 444 LGVEKN---DFSNVLTSKDPNKSLVFEPSIKLQNLSILSQQLNLNPSIKSQIVS----DS 496
Query: 419 PQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVND-EFDAYIVVSFN 477
P + + + L + S + + LP + +W + + + + ++F
Sbjct: 497 P-LSIATKHFTNNKIITLTNAVNYSNLISTSLPPNATKLWLIPDPATTGDNNTLLFITFP 555
Query: 478 NATLVLSI-GETVEEVSD-----SGF-LDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR 530
T++L I E++EE++ S F L ++ L+G S++QV + +RHI G+
Sbjct: 556 KKTMILQIDNESMEELTPDEATRSAFKLSQDTTIHTCLMGSHSIIQVCTAELRHIVPTGK 615
Query: 531 I---NE--WRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQ-LLEVEKH-EMSGD 583
N+ W P IV S++ Q++I+LS EL+YF++D++ L+E+ H E+ D
Sbjct: 616 SRYSNKLTWVPPAGIRIVCATSSKTQLIISLSNYELVYFKIDVSSDSLIELTTHPEL--D 673
Query: 584 VACLDIASVPEGRKRSRFLAVGSYDNTIRILSL--DPDDCMQILSVQSVSSPPESLLFLE 641
+A V + + + LA+ + I+I+SL +D + ++S+Q VS ++ +
Sbjct: 674 TMPSKVAIVQD-TQHADLLAIADNEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVR 732
Query: 642 VQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
+S+G L L+ GL+NGV + + V G +D + RFLGL+P L
Sbjct: 733 -DSSIG---------QLNLHVGLENGVYMKFHIGDVDGSFTDIKRRFLGLKPVSL 777
Score = 254 (94.5 bits), Expect = 4.3e-43, Sum P(4) = 4.3e-43
Identities = 72/255 (28%), Positives = 131/255 (51%)
Query: 1 MYLYSLTLQQPTGIIAAINGNF----SGTKTPE--IVVARGKVLELLRPENSGRIETLVS 54
+YLY LTL++ T + + G+F +G+K + + VA LEL + G ++ +
Sbjct: 58 LYLYHLTLKKQTNFVHSCIGHFVDLEAGSKREQSQLCVATETHLELYDTAD-GELKLIAK 116
Query: 55 TE-IFGAIRSLAQFRL--TGSQKD------YIVVGSDSGRIVILEYNPSKNVF--DKIHQ 103
+ +F I S+ L +GS+ ++ + SDSG + I++ +
Sbjct: 117 FQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQIIMHAGALRLKTLVN 176
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSH 163
+ ++ RR+ P Y+ +DP GR +++ + E+ KL +++ D A +L ISSPLE + H
Sbjct: 177 QPLTRTTLRRVSPISYMEIDPNGRCIILSSVEQNKLCFLV--DYAQKLRISSPLEIIRPH 234
Query: 164 TIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKW 223
+ + +D F+NP F +E+D AA++ +L FY L+LGLNH+ +K
Sbjct: 235 MVTLDMAVVDVNFNNPCFVTLEID----------NAATQLSVHLIFYVLELGLNHIVKKA 284
Query: 224 SEPVDNGANMLVTVP 238
V+ AN ++++P
Sbjct: 285 DYLVNPSANFVLSLP 299
Score = 213 (80.0 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 68/231 (29%), Positives = 113/231 (48%)
Query: 934 LELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKC--ENKLFPNTIVSIN 991
+ELLH+T++ A+ +F+ LL +G + LY LGKK+LLR+ + + IVS++
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSITKIVSMH 1078
Query: 992 TYR-DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNI 1050
+ +R+ VGDI ES + N + DDSV R +T +D T+ GAD++GN
Sbjct: 1079 QWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGADRYGNA 1138
Query: 1051 YFVRLPQDVSDEIEE-DPT---GGKIKWE------QGKLNGAPN---KMEEIVQFHVGDV 1097
+ +R P + + DP+ G IK+ Q KL + K + + F V D+
Sbjct: 1139 WTLRSPPECEKIMSNHDPSELSNGAIKYPLDVITLQQKLPNTYDCKFKFQLLNHFFVNDI 1198
Query: 1098 VTSLQKA-SLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQ 1147
+T SL IY + G++G + S+ +V ++E M +
Sbjct: 1199 ITDFHILDSLSNSDRPGCIYMGLQGTVGCFIPLLSKGNVFMMGNIENIMAE 1249
Score = 134 (52.2 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 1152 LCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGE-ILKKLEEIR 1209
+ GRDH YRS Y PV+ VIDGDLCE F LSL+ Q +A L E I++ + E+R
Sbjct: 1299 ILGRDHQEYRSYYAPVRKVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEVR 1357
Score = 55 (24.4 bits), Expect = 5.5e-73, Sum P(4) = 5.5e-73
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 705 AAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASF-SSDQCVEGVVSVAGN 755
+ ++C SS W+ Y + + + L + + + F ++D + GV S++ +
Sbjct: 817 SCVVCHSSSTWVSYTWKNVWTIRQLKDQNMLSCSKFVNADVAINGVCSISSS 868
Score = 40 (19.1 bits), Expect = 6.0e-54, Sum P(3) = 6.0e-54
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 1057 QDVSDEIE-EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDV 1097
+ +SD I D + G++ G NG ++FH+GDV
Sbjct: 723 EKISDMIMVRDSSIGQLNLHVGLENGV------YMKFHIGDV 758
Score = 37 (18.1 bits), Expect = 8.5e-20, Sum P(3) = 8.5e-20
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 49 IETLVSTEIFGAIRSLAQFR 68
IE L TEI I ++ +F+
Sbjct: 1019 IELLHQTEIISPIHAMLKFK 1038
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 332 (121.9 bits), Expect = 2.0e-63, Sum P(4) = 2.0e-63
Identities = 113/432 (26%), Positives = 203/432 (46%)
Query: 386 QPRGLKNLVRI-EQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSE 444
QP + V I E+ +L PI+D + +L + Q+ T G SLRI+R G+ ++E
Sbjct: 331 QPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINE 390
Query: 445 MAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT--LVLSIGETVEEVSDSGFLDTTP 502
A +L G+ +W++K ++++ FD ++VVSF + T L ++I + +EE GFL
Sbjct: 391 QASVELQGI-KGMWSLKSSIDEAFDTFLVVSFISETRILAMNIEDELEETEIEGFLSEVQ 449
Query: 503 SLAVSLIGDDSLMQVHPSGIRHIREDGRI--NEWRTPGKRTIVKVGSNRLQVVIALSGGE 560
+L + L+QV + +R + R N+W P ++ +N QV++A GG
Sbjct: 450 TLFCHDAVYNQLVQVTSNSVRLVSSTTRELRNKWDAPAGFSVNVATANASQVLLATGGGH 509
Query: 561 LIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPD 619
L+Y E+ G L EV+ + +V+CLDI + + S+ AVG + D ++RI L PD
Sbjct: 510 LVYLEIG-DGTLTEVKHVLLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFVL-PD 567
Query: 620 DCMQILSVQSVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMV 677
+ +++ + + P S+L + G +L L +G L +D
Sbjct: 568 --LTLITKEELGGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFQLDTS 613
Query: 678 TGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYA 737
G+L D + LG RP L + + S RP + Y + + L + ++ + + +
Sbjct: 614 CGKLRDRKKVSLGTRPITLRTFSSKSATHVFAASDRPAVIYSNNKKLLYSNVNLKEVSHM 673
Query: 738 ASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET 797
F+S + + L + TI+ + + T +P+ RR Q + + I
Sbjct: 674 CPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRT-IPIGEHARRICHQEQTRTFAI-SC 731
Query: 798 DQGALTAEEREA 809
+ +AEE E+
Sbjct: 732 LRNEPSAEESES 743
Score = 250 (93.1 bits), Expect = 2.0e-63, Sum P(4) = 2.0e-63
Identities = 102/369 (27%), Positives = 170/369 (46%)
Query: 851 PKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQ 910
P AE + +R+LD +S L E SI + +F D ++ VGTA L
Sbjct: 736 PSAEESE-SHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKN-VYYCVGTAYVL- 792
Query: 911 FWPKRNI-VAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLY-- 967
P+ N G I ++ VEEG+ L+L+ + + +G +L F G+LLA I ++LY
Sbjct: 793 --PEENEPTKGRILVF-IVEEGR-LQLITEKETKGAVYSLNAFNGKLLASINQKIQLYKW 848
Query: 968 ---DLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD 1024
D G + L +C + + + T D I VGD+ +S Y+ +E + A D
Sbjct: 849 MLRDDGTRELQSECGHHGHILALY-VQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARD 907
Query: 1025 SVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPN 1084
W+TA ++ D G D NI+ V+ + + + EE + + E + G +
Sbjct: 908 YNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATD-EE-----RARME---VVGEYH 958
Query: 1085 KMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMH 1144
E + +F G +V L + + G +VI+GTV G +G ++A ++ F L+
Sbjct: 959 IGEFVNRFRHGSLVMKLPDSDI--GQIPTVIFGTVSGMIG-VIASLPQEQYAFLEKLQTS 1015
Query: 1145 MRQEHPPLCGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPG 1199
+R+ + G H +RS K +DGDL E F LS +I+ +D
Sbjct: 1016 LRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVE 1075
Query: 1200 EILKKLEEI 1208
E+ K++EE+
Sbjct: 1076 ELCKRVEEL 1084
Score = 133 (51.9 bits), Expect = 2.0e-63, Sum P(4) = 2.0e-63
Identities = 55/238 (23%), Positives = 107/238 (44%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y++T Q+PT + + GNF+ + ++VA+ +E LL P+ ++T++ ++G I
Sbjct: 6 YAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQG---LQTILDVPLYGRI 62
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYN-PSKNVFDKIHQETFGKSGCRRIVPGQYL 120
++ FR G +D++ V ++ + +L+++ S + + + + G R GQ
Sbjct: 63 ATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIG-RPTDNGQIG 121
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
+DP R +IG L V+ D +L + + + + G P
Sbjct: 122 IIDPDCR--VIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCTKPT 176
Query: 181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVP 238
A + D +A T + + + KN F E N++ DNGA++L+ VP
Sbjct: 177 IAVLYQDNKDARHVKTYEVSLK-DKN--FVEGPWSQNNL--------DNGADLLIPVP 223
Score = 127 (49.8 bits), Expect = 2.0e-63, Sum P(4) = 2.0e-63
Identities = 45/182 (24%), Positives = 82/182 (45%)
Query: 205 KNLTFYELDL-GLNHVSRKWSEP-VDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQG 261
+++ YE+ L N V WS+ +DNGA++L+ VP P GVL+ E ++Y +
Sbjct: 188 RHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPS----PLCGVLIIGEETIVYCSA- 242
Query: 262 HPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSEL 321
+ IP R + G + + + +LL G I + + H+ E V+ L
Sbjct: 243 --NAFKAIPIRPSITKAYGRVDLDGSR--------YLLGDHAGLIHLLVITHEKEKVTGL 292
Query: 322 KIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQ 381
KI+ + +S+ L + +F S +G+ L + + PD + S ++E
Sbjct: 293 KIELLGETSIASSISYLDNAVVFVGSSYGDSQLIK---LNLQPDAKGSYVEILEKYVNLG 349
Query: 382 PV 383
P+
Sbjct: 350 PI 351
Score = 37 (18.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKW 1074
T +GA K G++ VR ++++ + G K W
Sbjct: 369 TCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMW 403
>TAIR|locus:2115909 [details] [associations]
symbol:DDB1A "damaged DNA binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
"negative regulation of photomorphogenesis" evidence=IGI;RCA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0003002 "regionalization"
evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
"protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0033043 "regulation of organelle organization" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
organ formation" evidence=RCA] [GO:0048608 "reproductive structure
development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
Uniprot:Q9M0V3
Length = 1088
Score = 342 (125.4 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 109/420 (25%), Positives = 199/420 (47%)
Query: 396 IEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPS 455
+E+ +L PI+D + +L + Q+ T G SLR++R G+ ++E A +L G+
Sbjct: 342 LERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGI-K 400
Query: 456 AVWTVKKNVNDEFDAYIVVSFNNATLVLSIG--ETVEEVSDSGFLDTTPSLAVSLIGDDS 513
+W++K ++++ FD ++VVSF + T +L++ + +EE GFL +L +
Sbjct: 401 GMWSLKSSIDEAFDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQ 460
Query: 514 LMQVHPSGIRHIREDGRI--NEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQ 571
L+QV + +R + R +EW P T+ +N QV++A GG L+Y E+ G+
Sbjct: 461 LVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIG-DGK 519
Query: 572 LLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSV 630
L EV+ + +V+CLDI + + S+ AVG + D ++RI SL P+ + +++ + +
Sbjct: 520 LTEVQHALLEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFSL-PE--LTLITKEQL 576
Query: 631 SSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRF 688
P S+L + G +L L +G L +D TGQL D +
Sbjct: 577 GGEIIPRSVLLCAFE-------GIS-----YLLCALGDGHLLNFQMDTTTGQLKDRKKVS 624
Query: 689 LGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEG 748
LG +P L + + S RP + Y + L + ++ + + + F+S +
Sbjct: 625 LGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDS 684
Query: 749 VVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEERE 808
+ L + TI+ + + T +PL RR Q + + I + +EE E
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRT-IPLGEHARRICHQEQTRTFGICSLGNQS-NSEESE 742
Score = 233 (87.1 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 95/361 (26%), Positives = 167/361 (46%)
Query: 862 IRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNI-VAG 920
+R+LD ++ L E SI + +F + ++ VGTA L P+ N G
Sbjct: 746 VRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTEDKN-VYYCVGTAYVL---PEENEPTKG 801
Query: 921 YIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLY-----DLGKKRLL 975
I ++ VE+G+ L+L+ + + +G +L F G+LLA I ++LY D G + L
Sbjct: 802 RILVF-IVEDGR-LQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQ 859
Query: 976 RKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH 1035
+C + + + T D I VGD+ +S Y+ +E + A D W++A
Sbjct: 860 SECGHHGHILALY-VQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEI 918
Query: 1036 IDFDTMAGADKFGNIYFVRLPQD-VSDEIEEDPTGGKIKWEQGKLN--GAPNKMEEIVQF 1092
+D D GA+ N+ V+ + +DE E+G+L G + E + +F
Sbjct: 919 LDDDIYLGAENNFNLLTVKKNSEGATDE------------ERGRLEVVGEYHLGEFVNRF 966
Query: 1093 HVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPL 1152
G +V L + + G +VI+GTV G +G ++A ++ F L+ +R+ +
Sbjct: 967 RHGSLVMRLPDSEI--GQIPTVIFGTVNGVIG-VIASLPQEQYTFLEKLQSSLRKVIKGV 1023
Query: 1153 CGRDHMAYRS-----AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
G H +RS ++ +DGDL E F LS + I+ ++ E+ K++EE
Sbjct: 1024 GGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEE 1083
Query: 1208 I 1208
+
Sbjct: 1084 L 1084
Score = 127 (49.8 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 54/238 (22%), Positives = 103/238 (43%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y +T +PT + + GNF+ + ++VA+ +E LL P+ ++ ++ I+G I
Sbjct: 6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQG---LQPMLDVPIYGRI 62
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNP-SKNVFDKIHQETFGKSGCRRIVPGQYL 120
+L FR G +D++ + ++ + +L+++P S + + + + G R GQ
Sbjct: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG-RPTDNGQIG 121
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
+DP R +IG L V+ D +L + + + + C P
Sbjct: 122 IIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL-FGCA--KPT 176
Query: 181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVP 238
A + D +A T + + K+ F E N + DNGA++L+ VP
Sbjct: 177 IAVLYQDNKDARHVKTYEVSL---KDKDFVEGPWSQNSL--------DNGADLLIPVP 223
Score = 118 (46.6 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 45/182 (24%), Positives = 83/182 (45%)
Query: 205 KNLTFYELDL-GLNHVSRKWSE-PVDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQG 261
+++ YE+ L + V WS+ +DNGA++L+ VP P GVL+ E ++Y +
Sbjct: 188 RHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPP----PLCGVLIIGEETIVYCSAS 243
Query: 262 HPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSEL 321
+A IP R + G + V + +LL G I + + H+ E V+ L
Sbjct: 244 A--FKA-IPIRPSITKAYGRVDVDGSR--------YLLGDHAGMIHLLVITHEKEKVTGL 292
Query: 322 KIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQ 381
KI+ + +++ L + +F S +G+ L + + PD + S ++E
Sbjct: 293 KIELLGETSIASTISYLDNAVVFVGSSYGDSQLVK---LNLHPDAKGSYVEVLERYINLG 349
Query: 382 PV 383
P+
Sbjct: 350 PI 351
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 370 (135.3 bits), Expect = 3.6e-59, Sum P(4) = 3.6e-59
Identities = 111/409 (27%), Positives = 199/409 (48%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+D+ + +L + QI T G SLRI+R G+ + E A LPG
Sbjct: 345 VVPVENFTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACIDLPG 404
Query: 453 VPSAVWTVKKNVNDE-FDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIG 510
+ +W++K V++ ++ +V++F T +L++ GE VEE GF + S +
Sbjct: 405 I-KGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVD 463
Query: 511 DDSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDM 568
D L+QV +R + + + EWR G RTI V N Q+++A S ++ Y ++
Sbjct: 464 YDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVVSCNTTQILVA-SACDIFYIVIE- 521
Query: 569 TGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSV 627
G L E + ++ +VACLDI + E +K+S +AVG + D + ILSL PD ++ +
Sbjct: 522 DGSLREQSRRTLAYEVACLDITPLDETQKKSDLVAVGLWTDISAVILSL-PD--LETIYT 578
Query: 628 QSVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSR 685
+ +S P S+L + H +L L +G ++ ++D TGQL+D +
Sbjct: 579 EKLSGEIIPRSILMTTFEGI--------H----YLLCALGDGSMYYFIMDQTTGQLTDKK 626
Query: 686 SRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQC 745
LG +P L + + S RP + Y + + + ++ + + + S ++
Sbjct: 627 KVTLGTQPTTLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAY 686
Query: 746 VEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVI 794
+ + NA+ + TI+ + + T +PL PRR Q + +
Sbjct: 687 PDSLALANKNAVILGTIDEIQKLHIRT-VPLGEGPRRIAYQESSQTFAV 734
Score = 231 (86.4 bits), Expect = 3.6e-59, Sum P(4) = 3.6e-59
Identities = 91/340 (26%), Positives = 149/340 (43%)
Query: 882 EAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQ 941
E S+ + D + T V T+ + P+ + G I I+ + E K L + +T+
Sbjct: 812 ETISSLMSAKLGD-DPNTYYVVATSLVIPEEPEPKV--GRIIIFHY-HENK-LTQVAETK 866
Query: 942 VEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENKLFPNTIVSI--NTYRDRIY 998
V+G AL +F G++LAGIG +RLY+ +K L +C N I ++ D I
Sbjct: 867 VDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMECN---IQNMIAALFLKAKGDFIL 923
Query: 999 VGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQD 1058
VGD+ S ++++ E A D P+W+ A +D DT G++ GN++ +
Sbjct: 924 VGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFLGSETNGNLFVCQKDSA 983
Query: 1059 VSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGT 1118
+ + E ++ G + + F G +V P G V+YGT
Sbjct: 984 ATTDEERQLLPELARFHLG---------DTVNVFRHGSLVMQNVGERTTPING-CVLYGT 1033
Query: 1119 VMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYR-----SAYFPVKDVIDG 1173
G++G + +D DF LE +++ + +H YR S P + IDG
Sbjct: 1034 CNGAIGIVTQIP-QDFYDFLHGLEERLKKIIKSVGKIEHTYYRNFQINSKVEPSEGFIDG 1092
Query: 1174 DLCEQFPTLSLDLQRKIADELDRT-PGEILKKLEEIRNKI 1212
DL E F LS D R L+ T GE +K ++ + I
Sbjct: 1093 DLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVI 1130
Score = 144 (55.7 bits), Expect = 3.6e-59, Sum P(4) = 3.6e-59
Identities = 65/244 (26%), Positives = 104/244 (42%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y +T Q+PT ++A + GNF+ +++AR +E L+ PE + L I G I
Sbjct: 5 YVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEG---LRPLKEININGTI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVP--GQY 119
+ FR S KD + + + ++ILE +V + + S I G
Sbjct: 62 AVMRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVI 121
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
A+DPK R +IG C Q L ++ D A ++ L + + VY + + G NP
Sbjct: 122 AAIDPKAR--VIGMCLYQGLFTIIPMDKDASELKATNLRMDELN--VYDVEFLH-GCLNP 176
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
I +DS G+ + NL D ++ K + V+ A ML+ VP
Sbjct: 177 TVIVIH-------KDSDGRHVKSHEINLR----DKEFMKIAWK-QDNVETEATMLIPVPS 224
Query: 240 --GG 241
GG
Sbjct: 225 PIGG 228
Score = 55 (24.4 bits), Expect = 3.6e-59, Sum P(4) = 3.6e-59
Identities = 32/147 (21%), Positives = 59/147 (40%)
Query: 223 WSEP-VDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERG 280
W + V+ A ML+ VP P GV+V ++Y + G + AV P L +
Sbjct: 207 WKQDNVETEATMLIPVPS----PIGGVIVIGRESIVY-HDGS-NYHAVAP----LTFRQS 256
Query: 281 VLIVSAATHRQKTLFFFLLQTEYGDIFKV---TLEHDNE-HVSELKIKYFDTIPVTASMC 336
+ A + LL G ++ + T E V ++K++ I + +
Sbjct: 257 TINCYARVSSNGLRY--LLGNMDGQLYMLFLGTAETSKGVTVKDIKVEQLGEISIPECIT 314
Query: 337 VLKSGYLFAASEFGNHALYQFQAIGAD 363
L +G+L+ + G+ L + + D
Sbjct: 315 YLDNGFLYIGARHGDSQLVRLNSEAID 341
>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
symbol:ddb1 "damage specific DNA binding protein
1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
UniGene:Dr.77970 Uniprot:I1XUS8
Length = 1140
Score = 363 (132.8 bits), Expect = 5.5e-50, Sum P(4) = 5.5e-50
Identities = 114/429 (26%), Positives = 200/429 (46%)
Query: 396 IEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPS 455
+E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG+
Sbjct: 350 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-K 408
Query: 456 AVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSL 514
+W ++ + + D +V+SF T VL + GE VEE GF+D + + L
Sbjct: 409 GLWPLRSESSRDTDDMLVLSFVGQTRVLMLSGEEVEETELQGFVDNQQTFFCGNVAHQQL 468
Query: 515 MQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQL 572
+Q+ +R + +D + ++EW+ P R I N QVV+A+ G ++Y+ ++G+L
Sbjct: 469 IQITSVSVRLVTQDSKALVSEWKEPQGRNISVASCNNTQVVLAV--GRVLYYLQILSGEL 526
Query: 573 LEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVS 631
++ EM +VACLDI + E S AVG + D + R+L L P C L + +
Sbjct: 527 KQISSTEMEHEVACLDITPLGERTADSCICAVGLWTDISARLLKL-P--CFTPLHKEMLG 583
Query: 632 SP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFL 689
P S+L + S H +L L +G LF +D+ TG LS+ + L
Sbjct: 584 GEIIPRSILMTTFEGS--------H----YLLCALGDGALFYFGLDIQTGVLSERKKVTL 631
Query: 690 GLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGV 749
G +P L + + + S RP + Y + + + ++ + + Y +S+ + +
Sbjct: 632 GTQPTVLRTFRSLSTSNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSL 691
Query: 750 VSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTA 804
+ L + TI+ + + T +PL +P+R Q + ++ + D TA
Sbjct: 692 ALANNSTLTIGTIDEIQKLHIRT-VPLYESPKRICYQEVSQCFGVLSSRVEMQDASGTTA 750
Query: 805 EEREAAKKE 813
R +A +
Sbjct: 751 AVRPSASTQ 759
Score = 195 (73.7 bits), Expect = 5.5e-50, Sum P(4) = 5.5e-50
Identities = 88/356 (24%), Positives = 153/356 (42%)
Query: 859 VSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NI 917
V + V+D + + NE A S+ + ++ VGTA +P+
Sbjct: 788 VHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKL-GRDPAVYFIVGTA---MVYPEEAEP 843
Query: 918 VAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLR 976
G I ++ + + GK L+ + + +V+G ++ +F G+LLA I +RLY+ +K L
Sbjct: 844 KQGRIIVFHYTD-GK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT 901
Query: 977 KCENKLFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAH 1034
+C + N I+++ T D I VGD+ S Y+ E A D P W++A
Sbjct: 902 ECNHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSAVE 958
Query: 1035 HIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQ-FH 1093
+D D GA+ N++ + +D + +E+ + E G + + E V F
Sbjct: 959 ILDDDNFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFS 1008
Query: 1094 VGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLC 1153
G +V S P G SV++GTV G +G + + S L+ + + +
Sbjct: 1009 HGSLVLQNLGESSTPTQG-SVLFGTVNGMIGLVTSLSE-GWYSLLLDLQNRLNKVIKSVG 1066
Query: 1154 GRDHMAYRSAYFPVKD-----VIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+H +RS + K IDGDL E F L +++ L G +K+
Sbjct: 1067 KIEHSFWRSFHTERKTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKR 1122
Score = 116 (45.9 bits), Expect = 5.5e-50, Sum P(4) = 5.5e-50
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + A I G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYAVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S + D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIG 132
VDP+ R MIG
Sbjct: 121 IGIVDPECR--MIG 132
Score = 47 (21.6 bits), Expect = 2.4e-17, Sum P(3) = 2.4e-17
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGID 173
+P+GR + + +C ++V + R +S L+ S + + + +D
Sbjct: 492 EPQGRNISVASCNNTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVACLD 542
Score = 38 (18.4 bits), Expect = 5.5e-50, Sum P(4) = 5.5e-50
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 353 (129.3 bits), Expect = 2.7e-49, Sum P(4) = 2.7e-49
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 202 (76.2 bits), Expect = 2.7e-49, Sum P(4) = 2.7e-49
Identities = 87/352 (24%), Positives = 157/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G + +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 113 (44.8 bits), Expect = 2.7e-49, Sum P(4) = 2.7e-49
Identities = 37/148 (25%), Positives = 65/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNVCILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 38 (18.4 bits), Expect = 2.7e-49, Sum P(4) = 2.7e-49
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 1.6e-41, Sum P(4) = 1.6e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 353 (129.3 bits), Expect = 4.4e-49, Sum P(4) = 4.4e-49
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 204 (76.9 bits), Expect = 4.4e-49, Sum P(4) = 4.4e-49
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 4.4e-49, Sum P(4) = 4.4e-49
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 38 (18.4 bits), Expect = 4.4e-49, Sum P(4) = 4.4e-49
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 9.7e-42, Sum P(4) = 9.7e-42
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 352 (129.0 bits), Expect = 5.6e-49, Sum P(4) = 5.6e-49
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 204 (76.9 bits), Expect = 5.6e-49, Sum P(4) = 5.6e-49
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 5.6e-49, Sum P(4) = 5.6e-49
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 43 (20.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+G+ + + +C ++V + R L I P E + SHT
Sbjct: 492 EPQGKNISVASCNSSQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 38 (18.4 bits), Expect = 5.6e-49, Sum P(4) = 5.6e-49
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 1.2e-41, Sum P(4) = 1.2e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 346 (126.9 bits), Expect = 9.9e-49, Sum P(4) = 9.9e-49
Identities = 108/400 (27%), Positives = 190/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPGRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 208 (78.3 bits), Expect = 9.9e-49, Sum P(4) = 9.9e-49
Identities = 88/352 (25%), Positives = 159/352 (45%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L +AS P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGEAS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 9.9e-49, Sum P(4) = 9.9e-49
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 43 (20.2 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+G+ + + +C ++V + R L I P E + SHT
Sbjct: 492 EPQGKNISVASCNSSQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 38 (18.4 bits), Expect = 9.9e-49, Sum P(4) = 9.9e-49
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 2.2e-41, Sum P(4) = 2.2e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 348 (127.6 bits), Expect = 1.6e-48, Sum P(4) = 1.6e-48
Identities = 108/400 (27%), Positives = 190/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RI L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGMSPLCAIGLWTDISARIAKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 204 (76.9 bits), Expect = 1.6e-48, Sum P(4) = 1.6e-48
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 1.6e-48, Sum P(4) = 1.6e-48
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 43 (20.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+G+ + + +C ++V + R L I P E + SHT
Sbjct: 492 EPQGKNISVASCNSSQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 38 (18.4 bits), Expect = 1.6e-48, Sum P(4) = 1.6e-48
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 3.5e-41, Sum P(4) = 3.5e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 353 (129.3 bits), Expect = 1.8e-48, Sum P(4) = 1.8e-48
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 204 (76.9 bits), Expect = 1.8e-48, Sum P(4) = 1.8e-48
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 103 (41.3 bits), Expect = 1.8e-48, Sum P(4) = 1.8e-48
Identities = 36/148 (24%), Positives = 63/148 (42%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + +F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 38 (18.4 bits), Expect = 1.8e-48, Sum P(4) = 1.8e-48
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 9.7e-42, Sum P(4) = 9.7e-42
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 345 (126.5 bits), Expect = 3.3e-48, Sum P(4) = 3.3e-48
Identities = 108/400 (27%), Positives = 190/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSNQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RI L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARISKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 204 (76.9 bits), Expect = 3.3e-48, Sum P(4) = 3.3e-48
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 3.3e-48, Sum P(4) = 3.3e-48
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 43 (20.2 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+G+ + + +C ++V + R L I P E + SHT
Sbjct: 492 EPQGKNISVASCNSNQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 38 (18.4 bits), Expect = 3.3e-48, Sum P(4) = 3.3e-48
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 7.4e-41, Sum P(4) = 7.4e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 347 (127.2 bits), Expect = 8.4e-48, Sum P(4) = 8.4e-48
Identities = 107/411 (26%), Positives = 194/411 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPRAKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLD+ + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDVTPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET 797
+ + + L + T+ + + T +P+ +PR+ Q + ++ T
Sbjct: 689 DSLALANTSTLTIGTMNEIQKLHIRT-VPIYESPRKICYQEVSQCFGVLST 738
Score = 198 (74.8 bits), Expect = 8.4e-48, Sum P(4) = 8.4e-48
Identities = 86/352 (24%), Positives = 155/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ G L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY--SGGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV+ GTV G +G + + S + ++ + + + +H
Sbjct: 1014 MQNLGETS-TPTQG-SVLLGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 1070
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1071 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
Score = 109 (43.4 bits), Expect = 8.4e-48, Sum P(4) = 8.4e-48
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 38 (18.4 bits), Expect = 8.4e-48, Sum P(4) = 8.4e-48
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 1.8e-40, Sum P(4) = 1.8e-40
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 38 (18.4 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+ + + + +C ++V + R L I P E + SHT
Sbjct: 492 EPRAKNISVASCNSSQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 37 (18.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 353 (129.3 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + + E D +V+SF T VL + GE VEE +GF+D + +
Sbjct: 407 I-KGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y E+
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEI-RP 523
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 524 QELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF + + TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLSLETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 206 (77.6 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 85/350 (24%), Positives = 153/350 (43%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENK 981
++ + +GK L+ L + +V+G ++ +F G+LLA I +RLY+ +K L +C +
Sbjct: 849 VVFHY-SDGK-LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVT 1099
GA+ N++ + +D + +E+ + + G + E + F G +V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEER-------QHLQEVGLSHLGEFVNVFCHGSLVM 1014
Query: 1100 SLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMA 1159
+ P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1015 QNLGETSTPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEHSF 1072
Query: 1160 YRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1073 WRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKR 1122
Score = 99 (39.9 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 34/134 (25%), Positives = 59/134 (44%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKT 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY + + D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIG 132
+DP+ R MIG
Sbjct: 121 IGIIDPECR--MIG 132
Score = 41 (19.5 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNR 145
+P G+ + + +C ++V + R
Sbjct: 492 EPNGKNISVASCNSNQVVVAVGR 514
Score = 38 (18.4 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 38 (18.4 bits), Expect = 1.1e-47, Sum P(5) = 1.1e-47
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 353 (129.3 bits), Expect = 1.3e-46, Sum P(4) = 1.3e-46
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 179 (68.1 bits), Expect = 1.3e-46, Sum P(4) = 1.3e-46
Identities = 72/273 (26%), Positives = 128/273 (46%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFS 1130
+ +L + S P G SV++GTV G +G + + S
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLS 1044
Score = 109 (43.4 bits), Expect = 1.3e-46, Sum P(4) = 1.3e-46
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 38 (18.4 bits), Expect = 1.3e-46, Sum P(4) = 1.3e-46
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 2.8e-39, Sum P(4) = 2.8e-39
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 352 (129.0 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + N E D +V+SF T VL + GE VEE GF+D + +
Sbjct: 407 I-KGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++
Sbjct: 466 QQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHPQ 524
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 525 -ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF +++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 727
Score = 179 (68.1 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 72/273 (26%), Positives = 128/273 (46%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 793 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 848
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 849 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 906
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 963
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 964 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 1013
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFS 1130
+ +L + S P G SV++GTV G +G + + S
Sbjct: 1014 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLS 1044
Score = 109 (43.4 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP+ R + + + V L+RD
Sbjct: 121 IGIIDPECRMIGLRLYDGLFKVIPLDRD 148
Score = 43 (20.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHK-SHT 164
+P+G+ + + +C ++V + R L I P E + SHT
Sbjct: 492 EPQGKNISVASCNSSQVVVAVGR-ALYYLQIH-PQELRQISHT 532
Score = 38 (18.4 bits), Expect = 1.5e-46, Sum P(4) = 1.5e-46
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 320
Score = 38 (18.4 bits), Expect = 3.4e-39, Sum P(4) = 3.4e-39
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 264 VDPNGSRYLLGDMEGRLFMLLLEKE 288
Score = 37 (18.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 600 RFLAVGSYDNTIRILSLDPDD 620
R + + YD +++ LD D+
Sbjct: 129 RMIGLRLYDGLFKVIPLDRDN 149
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 337 (123.7 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
Identities = 108/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 347 VVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 406
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + + D +V+SF T VL++ GE VEE +GF+D + +
Sbjct: 407 I-KGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAH 465
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P R + N QV++A+ G L Y E+
Sbjct: 466 QQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAV-GRVLYYLEIH-P 523
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
G+L + EM +VACLD+ + S A+G + D + RILSL P Q+L +
Sbjct: 524 GELRQTSCTEMEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARILSL-PG--FQLLHKE 580
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF ++ TG LSD +
Sbjct: 581 MLGGEIIPRSILMTSFESS--------H----YLLCALGDGALFYFSLNTDTGLLSDRKK 628
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +S+
Sbjct: 629 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYP 688
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 689 DSLALANNSTLTIGTIDEIQKLHIRT-VPLFESPRKICYQ 727
Score = 196 (74.1 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
Identities = 85/351 (24%), Positives = 156/351 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIH 923
++D + + NE S+ + K+ T VGTA + + + G I
Sbjct: 793 IIDQHTFEVLHTHQFLQNEYTLSLVSCKL-GKDPTTYFVVGTA--MVYPDEAEPKQGRIV 849
Query: 924 IYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENKL 982
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ +K L +C +
Sbjct: 850 VFQY-NDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHY- 906
Query: 983 FPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDT 1040
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 907 --NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDN 964
Query: 1041 MAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDVV 1098
GA+ N++ + +D + +E+ + E G + + E V H V+
Sbjct: 965 FLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLVM 1014
Query: 1099 TSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 1158
+L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 1015 QNLGETS-PPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDVQNRLNKVIKSVGKIEHS 1071
Query: 1159 AYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1072 FWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKR 1122
Score = 108 (43.1 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
Identities = 38/148 (25%), Positives = 63/148 (42%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + A + G+F+ +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S + D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRD 146
+DP R + + + V L RD
Sbjct: 121 IGIIDPDCRMIGLRLYDGLFKVIPLERD 148
Score = 42 (19.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNR 145
+P+GR V + +C ++++ + R
Sbjct: 492 EPQGRKVSVCSCNSRQVLLAVGR 514
Score = 37 (18.1 bits), Expect = 2.8e-46, Sum P(4) = 2.8e-46
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 285 LEKEEQMDGSVTLKDLRVELLGETSIAECLTYLDNG 320
>DICTYBASE|DDB_G0286013 [details] [associations]
symbol:repE "UV-damaged DNA binding protein1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
Uniprot:B0M0P5
Length = 1181
Score = 279 (103.3 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 125/539 (23%), Positives = 238/539 (44%)
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
FL +G + + L H + V ELK + I + +S+ L SG ++ S G+ L +
Sbjct: 306 FLFGDHFGRLSVLVLIHQQQKVMELKFEQLGRISIPSSISYLDSGVVYIGSSSGDSQLIR 365
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+ + D +T + + + +E ++ P++D + + ++
Sbjct: 366 ---LNTEKD---------QTTDSY------------VTYLEAFTNIGPVVDFCVVDAEKQ 401
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN----------- 465
QI T G SLRI+R G+ ++E A +L G+ ++ + N N
Sbjct: 402 GQAQIVTCSGTYRDGSLRIIRNGIGIAEQASIELEGI-KGIFPINNNNNNNNNNNNNNNN 460
Query: 466 ----------DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD-DS 513
D D Y++ SF T VLS GE +EE G +L I +
Sbjct: 461 NNNNNSNGITDSKDRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNL 520
Query: 514 LMQVHPSGIRHIREDG--RINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQ 571
L+Q+ I I + R+++W R I V +N+ Q+V+++ L+YF+++ + +
Sbjct: 521 LIQITNVSINLIDSNTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINSSNK 579
Query: 572 LLEVEKH-EMSGDVACLDIASVPEGRK-RSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+++ K E+ +++C+DI+ +S+ ++VG + D T+RI L P ++ + +
Sbjct: 580 SIQLVKEIELPHEISCIDISPFDSFMDTKSQLVSVGLWNDITLRIFKL-PT--LEEIWKE 636
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L + D D+ +F + G +G LF+ D + +L D R
Sbjct: 637 PLGGEILPRSILMISF-------DSIDY---IFCSLG--DGHLFKFQFDFSSFKLFDKRK 684
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + +S RP + Y H + + ++ + + SF+SD
Sbjct: 685 LTLGTQPIILKKFKLKNTINIFAISDRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFP 744
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTP-RRFV-LQPKKKLMVI-IETDQGAL 802
+ N+L + TI+ + + +T +PL RR V L+ VI ++ ++G L
Sbjct: 745 NSMAIATTNSLTIGTIDEIQKLHIKT-IPLNEEMGRRIVHLEDHSCYAVITVKNNEGLL 802
Score = 179 (68.1 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 91/391 (23%), Positives = 160/391 (40%)
Query: 854 ESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWP 913
E D+ VS IR+ + ++ +L E +SI F + T LAVGT+
Sbjct: 810 EEDEEVSYIRIYNDQTFELISSYKLDPYEMGWSITPCKFAGDDVNTYLAVGTSINTPIKS 869
Query: 914 KRNIVAGYIHIYRFVEEGKSLE----------------LLHKTQVEGIPLALCQFQGRLL 957
++ + + SL+ LL + + L F GRL+
Sbjct: 870 SGRVLLFSLSSSSSSNDKDSLDNNNNNNNNSGANGKLTLLEEIKFRSSVYFLLSFNGRLI 929
Query: 958 AGIGPVLRL--YDLGKKRLLR--KCENKLFPNTIVSINTYRDR-IYVGDIQESFHFCKYR 1012
A + L Y K++ + E+ +T++ R I VGD+ +S +
Sbjct: 930 AAVHKRLFSIRYTHSKEKNCKVISSESVHKGHTMILKLASRGHFILVGDMMKSMSLLVEQ 989
Query: 1013 RDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKI 1072
D L A + P W+ + I+ D GA+ N V+ D ++E+E +
Sbjct: 990 SD-GSLEQIARNPQPIWIRSVAMINDDYFIGAEASNNFIVVKKNNDSTNELERE------ 1042
Query: 1073 KWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV--PGGGESVI----YGTVMGSLGAM 1126
++ + +H+G+ + S++ SLV P + +I Y +V GS+G +
Sbjct: 1043 ------------LLDSVGHYHIGESINSMRHGSLVRLPDSDQPIIPTILYASVNGSIGVV 1090
Query: 1127 LAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSA---YFPV--KDVIDGDLCEQFPT 1181
+ S D + FFS L+ + Q + G H +R+ + + K+ IDGDL E F
Sbjct: 1091 ASISEEDFI-FFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFIDGDLIETFLD 1149
Query: 1182 LSLDLQRKIADELDRTPGEILKKLEEIRNKI 1212
L + Q K +L TP + +++E + I
Sbjct: 1150 LKYESQLKAVADLGITPDDAFRRIESLMQYI 1180
Score = 168 (64.2 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 41/153 (26%), Positives = 77/153 (50%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MY + T+Q+PT + ++ GNF+G +++++ +E+ + G ++ + I+G
Sbjct: 1 MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDG-LKPMFDVNIYGR 59
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYN-PSKNVFDKIHQETFGKSGCRRIVPGQY 119
I L F + GS++DY+ + ++S + IL Y+ K + K G R GQ
Sbjct: 60 ISVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIG-RPTEAGQL 118
Query: 120 LAVDPKGRAVMIGACEKQ-KLVYVLNRDTAARL 151
+DP GR V + E KL+ + N +T ++
Sbjct: 119 GIIDPDGRIVALHLYEGLLKLITLDNNNTPNKI 151
Score = 93 (37.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 48/183 (26%), Positives = 78/183 (42%)
Query: 204 QKNLTFYELDL-GLNHVSRKWSEP-VDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQG 261
+K+++ YE+ V WS+ V +++LV VP GG VLV A+N + Y N G
Sbjct: 227 EKHISTYEISSKDTELVVGPWSQSNVGVYSSLLVPVPLGG-----VLVVADNGITYLN-G 280
Query: 262 HPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSEL 321
+ R + + + A T K FL +G + + L H + V EL
Sbjct: 281 K------VTRSVAVSYTKFL----AFTRVDKDGSRFLFGDHFGRLSVLVLIHQQQKVMEL 330
Query: 322 KIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSS-TLMETEEGF 380
K + I + +S+ L SG ++ S G+ L + + + D S T +E
Sbjct: 331 KFEQLGRISIPSSISYLDSGVVYIGSSSGDSQLIR---LNTEKDQTTDSYVTYLEAFTNI 387
Query: 381 QPV 383
PV
Sbjct: 388 GPV 390
Score = 39 (18.8 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 18/92 (19%), Positives = 40/92 (43%)
Query: 990 INTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGN 1049
++T +D+I + I +S + + + + + +P ++ FD+ D
Sbjct: 554 VSTNQDQIVLS-IDKSLLYFQINSSNKSIQLVKEIELPHEISCIDISPFDSFM--DTKSQ 610
Query: 1050 IYFVRLPQDVS---------DEIEEDPTGGKI 1072
+ V L D++ +EI ++P GG+I
Sbjct: 611 LVSVGLWNDITLRIFKLPTLEEIWKEPLGGEI 642
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 353 (129.3 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 327 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 386
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + + E D +V+SF T VL + GE VEE +GF+D + +
Sbjct: 387 I-KGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAH 445
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y E+
Sbjct: 446 QQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEI-RP 503
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 504 QELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PS--FELLHKE 560
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF + + TG LSD +
Sbjct: 561 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLSLETGLLSDRKK 608
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 609 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 668
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 669 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 707
Score = 207 (77.9 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 85/350 (24%), Positives = 152/350 (43%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 773 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 828
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENK 981
++ + +GK L+ L + +V+G ++ +F G+LLA I +RLY+ +K L +C +
Sbjct: 829 VVFHY-SDGK-LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHY 886
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 887 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 943
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVT 1099
GA+ N++ + +D + +E+ + + G + E + F G +V
Sbjct: 944 NFLGAENAFNLFVCQ--KDSAATTDEER-------QHLQEVGLSHLGEFVNVFCHGSLVM 994
Query: 1100 SLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMA 1159
P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 995 QNLGEKSTPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEHAT 1052
Query: 1160 YRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1053 WRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKR 1102
Score = 64 (27.6 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 20 GNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVV 79
G+F+ + +++A+ LE+ G + + ++G + FR G KD + +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKTAVMELFRPKGESKDLLFI 59
Query: 80 GSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQYLAVDPKGRAVMIG 132
+ ILEY + + D I H + G R G +DP+ R MIG
Sbjct: 60 LTAKYNACILEYKQNGDNIDIITRAHGNVQDRIG-RPSETGIIGIIDPECR--MIG 112
Score = 41 (19.5 bits), Expect = 9.8e-13, Sum P(3) = 9.8e-13
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNR 145
+P G+ + + +C ++V + R
Sbjct: 472 EPNGKNISVASCNSNQVVVAVGR 494
Score = 38 (18.4 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 244 VDPNGSRYLLGDMEGRLFMLLLEKE 268
Score = 38 (18.4 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 265 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 300
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 353 (129.3 bits), Expect = 2.0e-43, Sum P(5) = 2.0e-43
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 327 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 386
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + + E D +V+SF T VL + GE VEE +GF+D + +
Sbjct: 387 I-KGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAH 445
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y E+
Sbjct: 446 QQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEI-RP 503
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 504 QELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PS--FELLHKE 560
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF + + TG LSD +
Sbjct: 561 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLSLETGLLSDRKK 608
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 609 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 668
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 669 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 707
Score = 199 (75.1 bits), Expect = 2.0e-43, Sum P(5) = 2.0e-43
Identities = 84/349 (24%), Positives = 149/349 (42%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 773 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 828
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENK 981
++ + +GK L+ L + +V+G ++ +F G+LLA I +RLY+ +K L +C +
Sbjct: 829 VVFHY-SDGK-LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHY 886
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 887 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 943
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVT 1099
GA+ N++ + +D + +E+ + + G + E + F G +V
Sbjct: 944 NFLGAENAFNLFVCQ--KDSAATTDEER-------QHLQEVGLSHLGEFVNVFCHGSLVM 994
Query: 1100 SLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMA 1159
P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 995 QNLGEKSTPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEHSL 1052
Query: 1160 Y----RSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
Y P IDGDL E F +S +++ L G +K+
Sbjct: 1053 YSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKR 1101
Score = 64 (27.6 bits), Expect = 2.0e-43, Sum P(5) = 2.0e-43
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 20 GNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVV 79
G+F+ + +++A+ LE+ G + + ++G + FR G KD + +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKTAVMELFRPKGESKDLLFI 59
Query: 80 GSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQYLAVDPKGRAVMIG 132
+ ILEY + + D I H + G R G +DP+ R MIG
Sbjct: 60 LTAKYNACILEYKQNGDNIDIITRAHGNVQDRIG-RPSETGIIGIIDPECR--MIG 112
Score = 41 (19.5 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNR 145
+P G+ + + +C ++V + R
Sbjct: 472 EPNGKNISVASCNSNQVVVAVGR 494
Score = 38 (18.4 bits), Expect = 2.0e-43, Sum P(5) = 2.0e-43
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 244 VDPNGSRYLLGDMEGRLFMLLLEKE 268
Score = 38 (18.4 bits), Expect = 2.0e-43, Sum P(5) = 2.0e-43
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 265 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 300
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 353 (129.3 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 109/400 (27%), Positives = 191/400 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPG 452
+V +E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG
Sbjct: 327 VVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPG 386
Query: 453 VPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD 511
+ +W ++ + + E D +V+SF T VL + GE VEE +GF+D + +
Sbjct: 387 I-KGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAH 445
Query: 512 DSLMQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
L+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y E+
Sbjct: 446 QQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEI-RP 503
Query: 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQ 628
+L ++ EM +VACLDI + + S A+G + D + RIL L P ++L +
Sbjct: 504 QELRQINCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PS--FELLHKE 560
Query: 629 SVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRS 686
+ P S+L ++S H +L L +G LF + + TG LSD +
Sbjct: 561 MLGGEIIPRSILMTTFESS--------H----YLLCALGDGALFYFGLSLETGLLSDRKK 608
Query: 687 RFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCV 746
LG +P L + + S RP + Y + + + ++ + + Y +SD
Sbjct: 609 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYP 668
Query: 747 EGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
+ + + L + TI+ + + T +PL +PR+ Q
Sbjct: 669 DSLALANNSTLTIGTIDEIQKLHIRT-VPLYESPRKICYQ 707
Score = 198 (74.8 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 86/353 (24%), Positives = 152/353 (43%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 773 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 828
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYD-LGKKRLLRKCENK 981
++ + +GK L+ L + +V+G ++ +F G+LLA I +RLY+ +K L +C +
Sbjct: 829 VVFHY-SDGK-LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHY 886
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 887 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 943
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVT 1099
GA+ N++ + +D + +E+ + + G + E + F G +V
Sbjct: 944 NFLGAENAFNLFVCQ--KDSAATTDEER-------QHLQEVGLSHLGEFVNVFCHGSLVM 994
Query: 1100 SLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMA 1159
P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 995 QNLGEKSTPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEHSL 1052
Query: 1160 Y---RSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
Y RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1053 YATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKR 1105
Score = 64 (27.6 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 28/116 (24%), Positives = 49/116 (42%)
Query: 20 GNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVV 79
G+F+ + +++A+ LE+ G + + ++G + FR G KD + +
Sbjct: 1 GHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKTAVMELFRPKGESKDLLFI 59
Query: 80 GSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQYLAVDPKGRAVMIG 132
+ ILEY + + D I H + G R G +DP+ R MIG
Sbjct: 60 LTAKYNACILEYKQNGDNIDIITRAHGNVQDRIG-RPSETGIIGIIDPECR--MIG 112
Score = 41 (19.5 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 123 DPKGRAVMIGACEKQKLVYVLNR 145
+P G+ + + +C ++V + R
Sbjct: 472 EPNGKNISVASCNSNQVVVAVGR 494
Score = 38 (18.4 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 122 VDPKGRAVMIGACEKQKLVYVLNRD 146
VDP G ++G E + + +L ++
Sbjct: 244 VDPNGSRYLLGDMEGRLFMLLLEKE 268
Score = 38 (18.4 bits), Expect = 2.6e-43, Sum P(5) = 2.6e-43
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 393 LVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRG 428
L + EQ++ + + D+R+ L E + T G
Sbjct: 265 LEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNG 300
>WB|WBGene00010890 [details] [associations]
symbol:ddb-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030163
"protein catabolic process" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 239 (89.2 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 101/414 (24%), Positives = 186/414 (44%)
Query: 386 QPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEM 445
+P G V +E ++ PI DM + + PQ+ T G SLR++R G+ + E+
Sbjct: 336 EPNGGSYSVILETYSNIGPIRDMVMVE--SDGQPQLVTCTGADKDGSLRVIRNGIGIDEL 393
Query: 446 AVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSL 504
A L GV ++ ++ + N D Y++VS ++ T VL I GE +E+V P++
Sbjct: 394 ASVDLAGVVG-IFPIRLDSNA--DNYVIVSLSDETHVLQITGEELEDVKLLEINTDLPTI 450
Query: 505 -AVSLIG-DDS--LMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGE 560
A +L G +DS ++Q IR + G W I KV N I L+ +
Sbjct: 451 FASTLFGPNDSGIILQATEKQIRLMSSSGLSKFWEPTNGEIISKVSVNAANGQIVLAARD 510
Query: 561 LIYFE---VDMTGQL---LEVEKHEMSGDVACLDIASVPEG-RKRSRFLAVGSYDN-TIR 612
+Y VD G L L EK + ++ACLD+++ + ++ FL + + +
Sbjct: 511 TVYLLTCIVDEMGALDIQLTAEK-KFENEIACLDLSNEGDDPNNKATFLVLAFWSTFAME 569
Query: 613 ILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRT 672
++ L PD +++V P + ++ + A+ E H +L +G L
Sbjct: 570 VIQL-PD----LITVCHTDLPTK-IIPRSIIATCIEEV---H----YLLVAFGDGALVYY 616
Query: 673 VVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE 732
V D+ TG + + +G RPP L V R + S RP + + + + + ++ +
Sbjct: 617 VFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVNVK 676
Query: 733 TLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
++ S SS + +V GN++ T++ + + + ++P+ + R Q
Sbjct: 677 LVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDI-QKIHVRSIPMGESVLRIAYQ 729
Score = 193 (73.0 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 87/371 (23%), Positives = 159/371 (42%)
Query: 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVA 919
S VLD + E E A S + F + + T VGT GL + +
Sbjct: 781 SSFMVLDQNTFQVLHSHEFGPWETALSCISGQFTN-DSSTYYVVGT--GLIYPDETETKI 837
Query: 920 GYIHIYRF--VEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR- 976
G I ++ VE K L +H+ V G PLA+ G+L+A I +RL++ + LR
Sbjct: 838 GRIVVFEVDDVERSK-LRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELRL 896
Query: 977 KCENKLFPNTI-VSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH 1035
+C + F + I + + + + V D+ S YR E A D +W+
Sbjct: 897 ECSS--FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEF 954
Query: 1036 IDFDTMAGADKFGNIYFVRLPQD--VSDEIEE--DPTGGKIKWEQGKLNGAPNKMEEIVQ 1091
I +++ G + N++ V + + ++D+ +PTG W G+L + ++Q
Sbjct: 955 ITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPTG---YWYLGELPKVMTRSTLVIQ 1011
Query: 1092 FHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPP 1151
+ S++ + +++GT G++G ++ + F +E +
Sbjct: 1012 ----------PEDSIIQYS-QPIMFGTNQGTIGMIVQIDDKWK-KFLIAIEKAIADSVKN 1059
Query: 1152 LCGRDHMAYRSAYF-----PVKDVIDGDLCEQF----PTLSLDLQRKIADE-----LDRT 1197
+H +YR+ F P +DGDL E ++++D+ K++D+ L R
Sbjct: 1060 CMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRD 1119
Query: 1198 PGEILKKLEEI 1208
P EILK +E++
Sbjct: 1120 PVEILKVIEDL 1130
Score = 94 (38.1 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 21/96 (21%), Positives = 52/96 (54%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y ++ ++ + ++ ++ GNF+G + ++VARG ++ L+ PE ++ + I+G +
Sbjct: 5 YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEG---LKNVCEIPIYGQV 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNV 97
++A + ++ ++V ++ + IL Y K V
Sbjct: 62 LTIALVKCKRDKRHSLIVVTEKWHMAILAYRDGKVV 97
Score = 85 (35.0 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 45/186 (24%), Positives = 75/186 (40%)
Query: 205 KNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPD 264
K+L F +L++ + R +S A+ V +P GV+V N V+YK + +
Sbjct: 184 KHLQFSDLNMH-DKEFRTYSRQASIAADSSVLIPVP-HAIGGVIVLGSNSVLYKP--NDN 239
Query: 265 VRAVIPRRADLPAERGVL---IVSAATHRQKTLFFFLLQTEYGDIF----KVTLEHDNEH 317
+ V+P L IV A+ R FLL G + VT
Sbjct: 240 LGEVVPYTCSLLENTTFTCHGIVDASGER------FLLSDTDGRLLMLLLNVTESQSGYT 293
Query: 318 VSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETE 377
V E++I Y + S+ + +G +F S G+ L + +P+ S S ++ET
Sbjct: 294 VKEMRIDYLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMT---EPN-GGSYSVILETY 349
Query: 378 EGFQPV 383
P+
Sbjct: 350 SNIGPI 355
Score = 40 (19.1 bits), Expect = 3.7e-34, Sum P(4) = 3.7e-34
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELK 322
F + T D+++V +D++H L+
Sbjct: 161 FKFVDTGEDDVYRVAFIYDDDHGKHLQ 187
>UNIPROTKB|Q21554 [details] [associations]
symbol:ddb-1 "DNA damage-binding protein 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
Length = 1134
Score = 239 (89.2 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 101/414 (24%), Positives = 186/414 (44%)
Query: 386 QPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEM 445
+P G V +E ++ PI DM + + PQ+ T G SLR++R G+ + E+
Sbjct: 336 EPNGGSYSVILETYSNIGPIRDMVMVE--SDGQPQLVTCTGADKDGSLRVIRNGIGIDEL 393
Query: 446 AVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSL 504
A L GV ++ ++ + N D Y++VS ++ T VL I GE +E+V P++
Sbjct: 394 ASVDLAGVVG-IFPIRLDSNA--DNYVIVSLSDETHVLQITGEELEDVKLLEINTDLPTI 450
Query: 505 -AVSLIG-DDS--LMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGE 560
A +L G +DS ++Q IR + G W I KV N I L+ +
Sbjct: 451 FASTLFGPNDSGIILQATEKQIRLMSSSGLSKFWEPTNGEIISKVSVNAANGQIVLAARD 510
Query: 561 LIYFE---VDMTGQL---LEVEKHEMSGDVACLDIASVPEG-RKRSRFLAVGSYDN-TIR 612
+Y VD G L L EK + ++ACLD+++ + ++ FL + + +
Sbjct: 511 TVYLLTCIVDEMGALDIQLTAEK-KFENEIACLDLSNEGDDPNNKATFLVLAFWSTFAME 569
Query: 613 ILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRT 672
++ L PD +++V P + ++ + A+ E H +L +G L
Sbjct: 570 VIQL-PD----LITVCHTDLPTK-IIPRSIIATCIEEV---H----YLLVAFGDGALVYY 616
Query: 673 VVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE 732
V D+ TG + + +G RPP L V R + S RP + + + + + ++ +
Sbjct: 617 VFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVNVK 676
Query: 733 TLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQ 786
++ S SS + +V GN++ T++ + + + ++P+ + R Q
Sbjct: 677 LVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDI-QKIHVRSIPMGESVLRIAYQ 729
Score = 193 (73.0 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 87/371 (23%), Positives = 159/371 (42%)
Query: 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVA 919
S VLD + E E A S + F + + T VGT GL + +
Sbjct: 781 SSFMVLDQNTFQVLHSHEFGPWETALSCISGQFTN-DSSTYYVVGT--GLIYPDETETKI 837
Query: 920 GYIHIYRF--VEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR- 976
G I ++ VE K L +H+ V G PLA+ G+L+A I +RL++ + LR
Sbjct: 838 GRIVVFEVDDVERSK-LRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELRL 896
Query: 977 KCENKLFPNTI-VSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH 1035
+C + F + I + + + + V D+ S YR E A D +W+
Sbjct: 897 ECSS--FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEF 954
Query: 1036 IDFDTMAGADKFGNIYFVRLPQD--VSDEIEE--DPTGGKIKWEQGKLNGAPNKMEEIVQ 1091
I +++ G + N++ V + + ++D+ +PTG W G+L + ++Q
Sbjct: 955 ITAESILGGEAHLNLFTVEVDKTRPITDDGRYVLEPTG---YWYLGELPKVMTRSTLVIQ 1011
Query: 1092 FHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPP 1151
+ S++ + +++GT G++G ++ + F +E +
Sbjct: 1012 ----------PEDSIIQYS-QPIMFGTNQGTIGMIVQIDDKWK-KFLIAIEKAIADSVKN 1059
Query: 1152 LCGRDHMAYRSAYF-----PVKDVIDGDLCEQF----PTLSLDLQRKIADE-----LDRT 1197
+H +YR+ F P +DGDL E ++++D+ K++D+ L R
Sbjct: 1060 CMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRD 1119
Query: 1198 PGEILKKLEEI 1208
P EILK +E++
Sbjct: 1120 PVEILKVIEDL 1130
Score = 94 (38.1 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 21/96 (21%), Positives = 52/96 (54%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y ++ ++ + ++ ++ GNF+G + ++VARG ++ L+ PE ++ + I+G +
Sbjct: 5 YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEG---LKNVCEIPIYGQV 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNV 97
++A + ++ ++V ++ + IL Y K V
Sbjct: 62 LTIALVKCKRDKRHSLIVVTEKWHMAILAYRDGKVV 97
Score = 85 (35.0 bits), Expect = 8.6e-39, Sum P(4) = 8.6e-39
Identities = 45/186 (24%), Positives = 75/186 (40%)
Query: 205 KNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPD 264
K+L F +L++ + R +S A+ V +P GV+V N V+YK + +
Sbjct: 184 KHLQFSDLNMH-DKEFRTYSRQASIAADSSVLIPVP-HAIGGVIVLGSNSVLYKP--NDN 239
Query: 265 VRAVIPRRADLPAERGVL---IVSAATHRQKTLFFFLLQTEYGDIF----KVTLEHDNEH 317
+ V+P L IV A+ R FLL G + VT
Sbjct: 240 LGEVVPYTCSLLENTTFTCHGIVDASGER------FLLSDTDGRLLMLLLNVTESQSGYT 293
Query: 318 VSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETE 377
V E++I Y + S+ + +G +F S G+ L + +P+ S S ++ET
Sbjct: 294 VKEMRIDYLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMT---EPN-GGSYSVILETY 349
Query: 378 EGFQPV 383
P+
Sbjct: 350 SNIGPI 355
Score = 40 (19.1 bits), Expect = 3.7e-34, Sum P(4) = 3.7e-34
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELK 322
F + T D+++V +D++H L+
Sbjct: 161 FKFVDTGEDDVYRVAFIYDDDHGKHLQ 187
>TAIR|locus:2081576 [details] [associations]
symbol:AT3G11960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 KO:K12830 EMBL:BT006164
EMBL:AK229623 IPI:IPI00530914 RefSeq:NP_187802.2 UniGene:At.5413
ProteinModelPortal:Q84R20 IntAct:Q84R20 PaxDb:Q84R20 PRIDE:Q84R20
EnsemblPlants:AT3G11960.1 GeneID:820369 KEGG:ath:AT3G11960
TAIR:At3g11960 eggNOG:NOG322382 HOGENOM:HOG000030342
InParanoid:Q84R20 OMA:GMLLRFE PhylomeDB:Q84R20
ProtClustDB:CLSN2690873 ArrayExpress:Q84R20 Genevestigator:Q84R20
Uniprot:Q84R20
Length = 1379
Score = 209 (78.6 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 46/138 (33%), Positives = 78/138 (56%)
Query: 389 GLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVS 448
G + L + ++++ PI+D + + E+ QIF CG P SLRI+R G+ V ++ +
Sbjct: 456 GTEKLHWMSSIQNIAPILDFSVMDDQNEKRDQIFACCGVTPEGSLRIIRSGINVEKLLKT 515
Query: 449 Q--LPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDS-GFLDTTPSLA 505
G+ + WTVK + D + +++V+SF T VLS+G + ++V+DS GF + A
Sbjct: 516 APVYQGI-TGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFA 574
Query: 506 VSLIGDDSLMQVHPSGIR 523
L+ D L+Q+H IR
Sbjct: 575 CGLVADGLLVQIHQDAIR 592
Score = 151 (58.2 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 65/282 (23%), Positives = 118/282 (41%)
Query: 934 LELLHKTQVEGIPLALCQFQGR-LLAGIGPVLRLYDL---GKKRLLRKCENKLFPNTIVS 989
L L T G+ LA+C + LA G + +R+ R + I S
Sbjct: 1070 LRLASSTTWPGMVLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRT-RFMITS 1128
Query: 990 INTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGN 1049
+ TY RI VGD ++ F Y + +L+ D R + +D +++A +D+ G+
Sbjct: 1129 LRTYFTRIVVGDCRDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGS 1188
Query: 1050 IYFVRLPQDVSD----EIE-EDPTGG---KIKWEQGKLNGAPNKMEEIVQFHVGDVVTSL 1101
I + +D SD +E P + G++ + K I + DV+ S
Sbjct: 1189 IAILSC-KDHSDFGMKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSY 1247
Query: 1102 QKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHP---PLCGRDHM 1158
+ + +++I GT++GS+ SS ++ + ++ + HP P+ G DH
Sbjct: 1248 GLSKSIDTADDTIIAGTLLGSIFVFAPISS-EEYELLEGVQAKLGI-HPLTAPVLGNDHN 1305
Query: 1159 AYRSAYFP--VKDVIDGDLCEQFPTLSLDLQRKIADELDRTP 1198
+R P + ++DGD+ QF L+ Q + +P
Sbjct: 1306 EFRGRENPSQARKILDGDMLAQFLELTNRQQESVLSTPQPSP 1347
Score = 118 (46.6 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 43/181 (23%), Positives = 79/181 (43%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
YL L+ P+ ++ G F + +IV + +EL+ G +E++ +FG I
Sbjct: 36 YLAKCILR-PSVVLQVAYGYFRSPSSRDIVFGKETCIELVVIGEDGIVESVCEQYVFGTI 94
Query: 62 RSLAQF----RLTGSQ----KDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRR 113
+ LA +L + KD + V SDSG++ L ++ + F I G R
Sbjct: 95 KDLAVIPQSSKLYSNSLQMGKDLLAVLSDSGKLSFLSFSNEMHRFSPIQHVQLSTPGNSR 154
Query: 114 IVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLT---ISSPLEAHKSHTIVYSIC 170
I G+ L +D G + + A + ++ L+ + + IS P E + + + +I
Sbjct: 155 IQLGRMLTIDSSGLFLAVSAYHDRFALFSLSTSSMGDIIHQRISYPSEDGGNGSSIQAIS 214
Query: 171 G 171
G
Sbjct: 215 G 215
Score = 115 (45.5 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 29/113 (25%), Positives = 54/113 (47%)
Query: 686 SRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQC 745
+R +G+ P L + ++ LS RPWL R T +S++ +A S +C
Sbjct: 819 TRRIGITPVFLVPFSDSLDSDIIALSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFEC 878
Query: 746 VEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETD 798
+G++ V+ N L + + + N L TPR+ + + KL++++ TD
Sbjct: 879 PQGILFVSENCLHLVEMVH-SKRRNAQKFQLGGTPRKVIYHSESKLLIVMRTD 930
Score = 54 (24.1 bits), Expect = 1.3e-20, Sum P(5) = 1.3e-20
Identities = 32/135 (23%), Positives = 53/135 (39%)
Query: 483 LSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIR------HIREDGR------ 530
LS + + V GF + A L+ D L+Q+H IR DG
Sbjct: 555 LSFKDVTDSV---GFQSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPF 611
Query: 531 INEWRTPGKR-TIVKVGSNRLQVVIALSGGELIYFEVDMTG----QLLEVEKHEMSGDVA 585
+ W ++ VG N L VV + L V ++ E+++ + +V+
Sbjct: 612 FSSWFPENVSISLGAVGQN-LIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVS 670
Query: 586 CLDIASVPEGRKRSR 600
C+ + G+KRSR
Sbjct: 671 CISVPQKHIGKKRSR 685
Score = 48 (22.0 bits), Expect = 1.3e-36, Sum P(5) = 1.3e-36
Identities = 16/83 (19%), Positives = 40/83 (48%)
Query: 590 ASVPEGRKRSRFLAVGSYDNTIRILSLDPDDC-MQILSVQSVSSPPESLLFLEVQASVGG 648
A++P ++ +G++ ++ +LS D +++L+ VS + + + +
Sbjct: 695 AAIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLT--NTMGTVISGCIPQ 752
Query: 649 EDGADHPASLFLNAGLQNGVLFR 671
+ L++ +GL+NG+L R
Sbjct: 753 DVRLVLVDQLYVLSGLRNGMLLR 775
Score = 45 (20.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 716 LGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNAL 757
L ++ R L LS++ + + F SD C VA L
Sbjct: 542 LSFVEETRVLSVGLSFKDVTDSVGFQSDVCTFACGLVADGLL 583
Score = 45 (20.9 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 601 FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPE 635
FLAV +Y + + SL I+ Q +S P E
Sbjct: 169 FLAVSAYHDRFALFSLSTSSMGDIIH-QRISYPSE 202
Score = 38 (18.4 bits), Expect = 1.4e-35, Sum P(5) = 1.4e-35
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 602 LAVGSYDNTIRILSLDPDDCMQILSVQSVSS 632
+++G+ + ++S + IL V+SVSS
Sbjct: 622 ISLGAVGQNLIVVSTSNPCFLSILGVKSVSS 652
>UNIPROTKB|F5H6C5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
Length = 272
Score = 281 (104.0 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 77/256 (30%), Positives = 130/256 (50%)
Query: 396 IEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPS 455
+E +L PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG+
Sbjct: 1 METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-K 59
Query: 456 AVWTVKKNVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSL 514
+W ++ + N E D +V+SF T VL + GE VEE GF+D + + L
Sbjct: 60 GLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQL 119
Query: 515 MQVHPSGIRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQL 572
+Q+ + +R + ++ + ++EW+ P + I N QVV+A+ G L Y ++ +L
Sbjct: 120 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-EL 177
Query: 573 LEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVS 631
++ EM +VACLDI + + S A+G + D + RIL L P ++L + +
Sbjct: 178 RQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKEMLG 234
Query: 632 SP--PESLLFLEVQAS 645
P S+L ++S
Sbjct: 235 GEIIPRSILMTTFESS 250
>UNIPROTKB|F1M680 [details] [associations]
symbol:Ddb1 "DNA damage-binding protein 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
Length = 600
Score = 215 (80.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 89/353 (25%), Positives = 159/353 (45%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 252 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 307
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 308 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 365
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 366 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 422
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 423 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 472
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + LC H
Sbjct: 473 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSLCSLTH 529
Query: 1158 M-AYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ +RS + P IDGDL E F +S +++ L G +K+
Sbjct: 530 LFTWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 582
Score = 108 (43.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 33/136 (24%), Positives = 62/136 (45%)
Query: 651 GADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCL 710
G P+S +L L +G LF +++ TG LSD + LG +P L + +
Sbjct: 52 GRLEPSSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 111
Query: 711 SSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFN 770
S RP + Y + + + ++ + + Y +SD + + + L + TI+ + +
Sbjct: 112 SDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHI 171
Query: 771 ETALPLRYTPRRFVLQ 786
T +PL +PR+ Q
Sbjct: 172 RT-VPLYESPRKICYQ 186
Score = 38 (18.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 552 VVIALSGGELIYFEVDM-TGQLLEVEK 577
++ AL G L YF +++ TG L + +K
Sbjct: 61 LLCALGDGALFYFGLNIETGLLSDRKK 87
>FB|FBgn0024698 [details] [associations]
symbol:Cpsf160 "Cleavage and polyadenylation specificity
factor 160" species:7227 "Drosophila melanogaster" [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;NAS] [GO:0006379 "mRNA cleavage" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 EMBL:AE013599 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:AF241364
EMBL:AF241365 EMBL:AF241366 EMBL:AY051896 RefSeq:NP_725397.1
RefSeq:NP_995833.1 UniGene:Dm.3414 ProteinModelPortal:Q9V726
STRING:Q9V726 PaxDb:Q9V726 PRIDE:Q9V726 EnsemblMetazoa:FBtr0089258
GeneID:44250 KEGG:dme:Dmel_CG10110 CTD:44250 FlyBase:FBgn0024698
InParanoid:Q9V726 OrthoDB:EOG4ZCRK8 PhylomeDB:Q9V726
GenomeRNAi:44250 NextBio:837008 Bgee:Q9V726 GermOnline:CG10110
Uniprot:Q9V726
Length = 1455
Score = 116 (45.9 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 82/356 (23%), Positives = 147/356 (41%)
Query: 880 DNEAAFSICTVNFHDKEHGT--LLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGK 932
++ AF I +++ G L +GT F +I + G IHIY +E GK
Sbjct: 1111 EHVTAFKIVKLSYEGTRSGLKEYLCIGT----NFNYSEDITSRGNIHIYDIIEVVPEPGK 1166
Query: 933 SL------ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKC--ENKLFP 984
+ E+ K Q +G A+ G L+ G+G + ++ L L+ + ++
Sbjct: 1167 PMTKFKIKEIFKKEQ-KGPVSAISDVLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYV 1225
Query: 985 NTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG- 1043
+ I+++ + I++ D+ +S +++ + L + + D P + + ++ G
Sbjct: 1226 HQIITVKSL---IFIADVYKSISLLRFQEEYRTLSLASRDFNPLEVYGIEFMVDNSNLGF 1282
Query: 1044 --ADKFGNIYFVRLPQDVSDEIEEDPTGGKI-KWEQGKLNGAPNKMEEIVQFHVGDVVTS 1100
D NI V + Q E E G K+ + L N M VQ H +
Sbjct: 1283 LVTDAERNI-IVYMYQP---EARESLGGQKLLRKADYHLGQVVNTMFR-VQCHQKGLH-- 1335
Query: 1101 LQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMR-QEHPPLCGRDHMA 1159
Q+ + V+YGT+ G+LG L + F + + QEH LCG +
Sbjct: 1336 -QRQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLSYQEH--LCGLNPKE 1392
Query: 1160 YRS-------AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
YR+ P + +IDGDL + ++ + ++A ++ EIL L EI
Sbjct: 1393 YRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEI 1448
Score = 110 (43.8 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 38/144 (26%), Positives = 70/144 (48%)
Query: 457 VWTV------KKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIG 510
VWTV K + ND+ D ++++S N+TLVL G+ + E+ ++GF P++ V +G
Sbjct: 563 VWTVFDDATKKSSRNDQHD-FMLLSQRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLG 621
Query: 511 DDS-LMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMT 569
++QV +R ++ I +V+V V + + G++I + T
Sbjct: 622 QQRFIVQVTTRHVRLLQGTRLIQNVPIDVGSPVVQVSIADPYVCLRVLNGQVITLALRET 681
Query: 570 -GQ-LLEVEKHEMSGDVACLDIAS 591
G L + KH +S A + I++
Sbjct: 682 RGTPRLAINKHTISSSPAVVAISA 705
Score = 105 (42.0 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 55/204 (26%), Positives = 82/204 (40%)
Query: 246 GVLVCAENFVIYKNQGHPDVRAVIPRRAD------LPAERGVLI-VSAATHRQKTLFFFL 298
G LV N VIY NQ P + AD L + GV I + A + +
Sbjct: 288 GCLVMTVNAVIYLNQSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLV 347
Query: 299 LQTEYGDIFKVTLEHDNEH-VSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQF 357
+ GD++ +TL D+ V +T+ +CVL S Y+F S GN L F
Sbjct: 348 ISLRTGDLYVLTLCVDSMRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHF 407
Query: 358 QAIGADPDVEASSSTLMETEEGFQPVFFQPRGLK----NLVRIEQVESLMPIMDMRIANL 413
E ST++ +E Q Q R L+ NL I V+ L +
Sbjct: 408 --------TEEDQSTVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRR 459
Query: 414 FEEEAPQIFTLCGRGPRSSLRILR 437
E+E +++ G G ++S+ LR
Sbjct: 460 IEDEELEVY---GSGAKASVLQLR 480
Score = 85 (35.0 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 22/105 (20%), Positives = 47/105 (44%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFG 107
R+E L + ++G + SL L G+ +D +++ ++ +L+++P + F
Sbjct: 67 RLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFE 126
Query: 108 KSGCRRIVPGQYLA----VDPKGRAVMIGACEKQKLVYVLNRDTA 148
+ R G+Y VDP R ++ K+ +V +D +
Sbjct: 127 EDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNS 171
Score = 50 (22.7 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 31/143 (21%), Positives = 62/143 (43%)
Query: 487 ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVG 546
+ +EE+ D L+ P+ A S +D ++V+ SG + + + R + I +V
Sbjct: 437 QNLEEIFDVDQLEMAPTQAKSRRIEDEELEVYGSGAK-----ASVLQLR----KFIFEVC 487
Query: 547 SNRLQV--VIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAV 604
+ + V + + GE + FE D G L + D+ +A+ + + + V
Sbjct: 488 DSLMNVAPINYMCAGERVEFEED--GVTLRPHAESLQ-DLKIELVAATGHSKNGALSVFV 544
Query: 605 GSYDNTIRILSLDPDDCMQILSV 627
+ I I S + D C+ + +V
Sbjct: 545 NCINPQI-ITSFELDGCLDVWTV 566
Score = 45 (20.9 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALT 803
+PLR TPR+ V + ++ +I + +T
Sbjct: 1029 VPLRCTPRQLVYHRENRVYCLITQTEEPMT 1058
Score = 44 (20.5 bits), Expect = 2.6e-05, Sum P(4) = 2.6e-05
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 618 PDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLF 670
P DC+Q+ +Q P L + V A + P + LN+ N F
Sbjct: 273 PFDCLQVYPIQK---PIGGCLVMTVNAVIYLNQSVP-PYGVSLNSSADNSTAF 321
Score = 40 (19.1 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 593 PEGRKRSRFLAVGSY---DNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGE 649
P+G + RF + D + LD +D + ++S P+ + L A+VGG
Sbjct: 896 PKGHLKIRFRKMDQLNLLDQQPTHIDLDENDEQE--EIESYQMQPKYVQKLRPFANVGGL 953
Query: 650 DG 651
G
Sbjct: 954 SG 955
Score = 37 (18.1 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 243 GPSGVLVCAEN--FVIYKNQG 261
G SGV+VC N FV +G
Sbjct: 952 GLSGVMVCGVNPCFVFLTFRG 972
>ASPGD|ASPL0000052925 [details] [associations]
symbol:ddbA species:162425 "Emericella nidulans"
[GO:0006282 "regulation of DNA repair" evidence=IEA;ISA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEP;IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0070913 "Ddb1-Wdr21
complex" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0070912 "Ddb1-Ckn1 complex" evidence=IEA] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0040020 "regulation of meiosis" evidence=IEA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0007090 "regulation of S phase
of mitotic cell cycle" evidence=IEA] [GO:0034644 "cellular response
to UV" evidence=IEA] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10 EMBL:BN001308
GO:GO:0003676 EMBL:AACD01000007 KO:K10610 OMA:DRPAVIY
OrthoDB:EOG473T0C RefSeq:XP_658200.1 STRING:Q5BFT4
EnsemblFungi:CADANIAT00002078 GeneID:2876375 KEGG:ani:AN0596.2
eggNOG:NOG316722 HOGENOM:HOG000216556 Uniprot:Q5BFT4
Length = 1132
Score = 144 (55.7 bits), Expect = 9.1e-17, Sum P(3) = 9.1e-17
Identities = 94/430 (21%), Positives = 172/430 (40%)
Query: 396 IEQVESLMPIMDMRIANL-----------FEEEAPQIFTLCGRGPRSSLRILRPGLAVSE 444
I+ + ++ P++D I +L F +I T G +LR +R G+ + E
Sbjct: 365 IQTLSNIAPVLDFTIMDLGNRTSENQMHEFSSGQARIVTGSGAFDDGTLRSVRSGVGLEE 424
Query: 445 MAV-SQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSI---GETVEEVSDSGF-LD 499
+ V + + +W ++ +F ++V+F N T V GE E S G L
Sbjct: 425 LGVLGDMEHITD-LWGLQVGSRGDFLDTLLVTFVNETRVFRFSPDGEAEELESFLGLSLS 483
Query: 500 TTPSLAVSLIGDDSLMQVHPSG--IRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALS 557
LA +L G ++QV I I I EW TP + I+ S ++ ++
Sbjct: 484 ENTLLAANLPGS-RILQVTEQRVLIADIECGMTIFEW-TPKNQLIITAASANDDTIVLVA 541
Query: 558 GGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLD 617
GG+ + +D+ + V + + D I+ V + VG + ++ L
Sbjct: 542 GGKHVTV-LDIQSEARVVSEKDFGADN---QISGVTLPTTPTDVCIVG-FPQLAKVSVLK 596
Query: 618 PDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMV 677
D I S S+ E+ + ASV E+ P +LF++ + +G + +
Sbjct: 597 LQDLSHISST-SLGPAGEAFPRSVLVASVLAENA---P-TLFIS--MADGSVITYDYNDQ 649
Query: 678 TGQLSDSRSRFLGLRPPKLFSVVVG-GRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEY 736
LS LG P + G G + + P L Y GR + + ++ E
Sbjct: 650 DHSLSGMNKLVLGSEQPTFKKLPRGNGLSNVFATCENPSLIYGSEGRIIYSAVNSEGASR 709
Query: 737 AASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIE 796
F+S+ E + L++ +++ T +T LP++ T RR P +K +
Sbjct: 710 ICHFNSEAYPESIAVATAQELKIGLVDKERTTQIQT-LPIKATVRRVAYSPSEKAFGMGT 768
Query: 797 TDQGALTAEE 806
++ ++ EE
Sbjct: 769 IERKLVSGEE 778
Score = 131 (51.2 bits), Expect = 9.1e-17, Sum P(3) = 9.1e-17
Identities = 73/305 (23%), Positives = 131/305 (42%)
Query: 920 GYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDL----GKKRLL 975
GYI ++ V+ G+ L + + +V+G AL +++A + + ++ + G +L
Sbjct: 843 GYIRVFE-VDNGRKLAKVAQERVKGACRALAVMGDKIVAALVKTVVVFQVVPRSGGLQLQ 901
Query: 976 RKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDEN----QLYIFADDSVPRWLT 1031
R + V I R+ I + D+ +S +Y EN +L A W T
Sbjct: 902 RLASYRT-STAPVDITVTRNVIAIADLMKSVCVVEYHEGENGAPDKLVEVARHFQTVWAT 960
Query: 1032 AAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQ 1091
+ DT +D GN+ +R ++ S E+D ++ E LN N++ +
Sbjct: 961 GVTSVAPDTYLESDAEGNLIVLR--RNRSGVEEDDRRRLEVTGEIC-LNEMVNRIRPVN- 1016
Query: 1092 FHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPP 1151
+ L A++VP TV GS+ + A + D DF L+ M
Sbjct: 1017 ------IQQLPSATVVP----RAFLATVEGSI-YLYAIINPDYQDFLMRLQATMASRADS 1065
Query: 1152 LCG---RDHMAYRS----AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
L G D+ A+R+ A P + +DG+L E+F T +Q++I D + + E+
Sbjct: 1066 LGGIPFTDYRAFRTMTRQATEPYR-FVDGELIERFLTCEPAVQKEIVDIVGSSLEEVRAI 1124
Query: 1205 LEEIR 1209
+E +R
Sbjct: 1125 VEALR 1129
Score = 79 (32.9 bits), Expect = 9.1e-17, Sum P(3) = 9.1e-17
Identities = 70/366 (19%), Positives = 131/366 (35%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRS 63
Y + + + I A+ +F + +VVA+ LE G + + S IF +
Sbjct: 3 YIAPIHRASSIRHALKLHFLNAEDECLVVAKANQLEFYSVTPDG-LALVTSCSIFARVTM 61
Query: 64 LAQFRL-TGSQKDYIVVGSDSGRIVILEYNPSKN-VFDKIHQETFGKSGCRRIVPGQYLA 121
LA S D++ VG+D L ++ ++N V + R G
Sbjct: 62 LACLPAPANSPTDHLFVGTDRYSYFTLSWDSARNQVRTERDYVDIADPSSRDARTGSRCM 121
Query: 122 VDPKGR---------------AVMIGACEKQKLVYVLNRDTAARL-TISSPLEAHKSHTI 165
+DP GR + + + + + V + A R+ + P+
Sbjct: 122 IDPSGRFMTLEIYDGMIVVIPIIQLPSKRRGRQVALPTGPDAPRIGELGEPIITRIDELF 181
Query: 166 VYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSE 225
V S + +P A + Y E +Q E K T + ++ +++
Sbjct: 182 VRSSAFLHVQAGSPRLALL---Y-EDNQKKVKLKVREL-KYSTAAGAESEFTSIA-DYAQ 235
Query: 226 PVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVS 285
+D GA+ L+ VP G+L+ E + Y + + ++ P E + V+
Sbjct: 236 ELDLGASHLIPVPAPLAAAGGLLILGETSIKYVDADNNEI-------VSQPLEEATIFVA 288
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
Q +LL +YG +F + L N V ++ + + L G +F
Sbjct: 289 ---WEQVDSQRWLLADDYGRLFFLMLVLRNSEVERWELHSLGNTSRASVLVYLGGGVVFV 345
Query: 346 ASEFGN 351
S G+
Sbjct: 346 GSHQGD 351
Score = 52 (23.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 538 GKRTIVKVGSNRLQVVIALSG-GELIYFEV-DMTGQLLEVEKHEMSGDVACLDIAS--VP 593
G ++++G QV+ LS ++ F + D+ + E + HE S A + S
Sbjct: 350 GDSQVIRIGDQSFQVIQTLSNIAPVLDFTIMDLGNRTSENQMHEFSSGQARIVTGSGAFD 409
Query: 594 EGRKRSRFLAVG 605
+G RS VG
Sbjct: 410 DGTLRSVRSGVG 421
Score = 43 (20.2 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 886 SICTVNFHDKEHG 898
S+C V +H+ E+G
Sbjct: 930 SVCVVEYHEGENG 942
Score = 37 (18.1 bits), Expect = 6.5e-06, Sum P(3) = 6.5e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 559 GELIYFEVDMTGQLLEVEKHEMSGDVACLDIA 590
G + FEVD +L +V + + G AC +A
Sbjct: 843 GYIRVFEVDNGRKLAKVAQERVKG--ACRALA 872
>TAIR|locus:2153122 [details] [associations]
symbol:CPSF160 "cleavage and polyadenylation specificity
factor 160" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009909 "regulation
of flower development" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AY140902 EMBL:AB025607
EMBL:AB018109 IPI:IPI00533913 RefSeq:NP_199979.2 UniGene:At.43551
IntAct:Q9FGR0 STRING:Q9FGR0 PaxDb:Q9FGR0 PRIDE:Q9FGR0
EnsemblPlants:AT5G51660.1 GeneID:835240 KEGG:ath:AT5G51660
TAIR:At5g51660 HOGENOM:HOG000265012 InParanoid:Q9FGR0 OMA:NIGDNRY
PhylomeDB:Q9FGR0 ProtClustDB:CLSN2680511 Genevestigator:Q9FGR0
GermOnline:AT5G51660 Uniprot:Q9FGR0
Length = 1442
Score = 174 (66.3 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 93/378 (24%), Positives = 166/378 (43%)
Query: 862 IRVLDP-RSAN---TTCLLELQDNEAAFSICTV---NFHDKEHGTLLAVGTAKGLQFWPK 914
I++L+P RS T + +Q +E A ++ V N E+ TLLAVGTA +
Sbjct: 1085 IQILEPERSGGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTA----YVQG 1140
Query: 915 RNIVA-GYIHIYRFVEEGKSLELL----HKTQVEGIPLALCQFQGRLLAGIGPVLRLYDL 969
++ A G + ++ F + G + + + + +++G A+ QG LL GP + L+
Sbjct: 1141 EDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW 1200
Query: 970 GKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD--SVP 1027
L P +VS+N + I +GD+ +S +F ++ +QL + A D S+
Sbjct: 1201 NGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLD 1260
Query: 1028 RWLTAAHHIDFDTM--AGADKFGNIY-FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPN 1084
+ T ID T+ A +D+ NI F P+ + W+ KL
Sbjct: 1261 CFATE-FLIDGSTLSLAVSDEQKNIQVFYYAPKMIES------------WKGLKLLSR-- 1305
Query: 1085 KMEEIVQFHVGDVVTSLQKASLVPGGGESV-----IYGTVMGSLGAMLAFSSRDDVDF-- 1137
+FHVG V+ + +V G + + ++GT+ GS G + D+V F
Sbjct: 1306 -----AEFHVGAHVSKFLRLQMVSSGADKINRFALLFGTLDGSFGCIAPL---DEVTFRR 1357
Query: 1138 FSHLEMHMRQEHPPLCGRDHMAYRSAYFPVK-------DVIDGDLCEQFPTLSLDLQRKI 1190
L+ + P + G + +A+R K ++D +L + L L+ Q ++
Sbjct: 1358 LQSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLEL 1417
Query: 1191 ADELDRTPGEILKKLEEI 1208
A ++ T ILK L ++
Sbjct: 1418 AHQIGTTRYSILKDLVDL 1435
Score = 95 (38.5 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 47/208 (22%), Positives = 86/208 (41%)
Query: 407 DMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTV--KK-- 462
D + ++ ++ G G +L +LR + + +LPG +WTV K
Sbjct: 529 DANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGC-KGIWTVYHKSSR 587
Query: 463 --NVN--------DEFDAYIVVSFNNATLVLSIGETVEEVSDSG--FLDTTPSLAVSLIG 510
N + DE+ AY+++S T+VL + + EV++S ++ A +L G
Sbjct: 588 GHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFG 647
Query: 511 DDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTG 570
++QV G R I + +N+ + G + V ++S + Y + MT
Sbjct: 648 RRRVIQVFEHGAR-ILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADP-YVLLRMTD 705
Query: 571 QLLEVEKHEMSGDVACLDIASVPEGRKR 598
+ + + S + SV EG KR
Sbjct: 706 DSIRLLVGDPSTCTVSISSPSVLEGSKR 733
Score = 72 (30.4 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 44/177 (24%), Positives = 71/177 (40%)
Query: 223 WSE-PVDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQGHPDVRAV--IPRRAD---- 274
WS + + A L+ VP P GVLV N + Y +Q A+ AD
Sbjct: 302 WSAINLPHDAYKLLAVPS----PIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQE 357
Query: 275 LPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTAS 334
LPA + + AA + LL T+ G++ +TL +D V L + + +
Sbjct: 358 LPASNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASD 417
Query: 335 MCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLK 391
+ + + F S G+ L QF + P AS L + +E + Q + L+
Sbjct: 418 ITSVGNSLFFLGSRLGDSLLVQFSC-RSGP--AASLPGLRDEDEDIEGEGHQAKRLR 471
Score = 53 (23.7 bits), Expect = 8.2e-16, Sum P(4) = 8.2e-16
Identities = 27/119 (22%), Positives = 50/119 (42%)
Query: 20 GNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQ----KD 75
GN + P++ RG V++ + + +E + + G + S+A + G +D
Sbjct: 79 GNTQELRNPKLA-KRGGVMDGVYGVS---LELVCHYRLHGNVESIAVLPMGGGNSSKGRD 134
Query: 76 YIVVGSDSGRIVILEYNPSKNVFDKIHQETF-G------KSGCRRIVPGQYLAVDPKGR 127
I++ +I +LE++ S + F G K G G + VDP+GR
Sbjct: 135 SIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESFPRGPLVKVDPQGR 193
Score = 44 (20.5 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 608 DNTIRILSLDPDDCMQILSVQSV 630
D++IR+L DP C +S SV
Sbjct: 705 DDSIRLLVGDPSTCTVSISSPSV 727
Score = 43 (20.2 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 452 GVPSAVWTVKKNVNDEFDAYIVVSFNNATL 481
GV AV +V D+ D Y VV + + L
Sbjct: 762 GVGEAVDSVDGGPQDQGDIYCVVCYESGAL 791
>UNIPROTKB|Q10570 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9606 "Homo sapiens" [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR004871 Pfam:PF03178
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003730 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
OMA:NIGDNRY CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
OrthoDB:EOG4BCDM3 EMBL:U37012 EMBL:BC017232 IPI:IPI00026219
RefSeq:NP_037423.2 UniGene:Hs.493202 ProteinModelPortal:Q10570
DIP:DIP-32694N IntAct:Q10570 MINT:MINT-1601544 STRING:Q10570
PhosphoSite:Q10570 DMDM:23503048 PaxDb:Q10570 PeptideAtlas:Q10570
PRIDE:Q10570 DNASU:29894 Ensembl:ENST00000349769
Ensembl:ENST00000568627 GeneID:29894 KEGG:hsa:29894 UCSC:uc003zcj.3
GeneCards:GC08M145618 HGNC:HGNC:2324 MIM:606027 neXtProt:NX_Q10570
PharmGKB:PA26841 InParanoid:Q10570 PhylomeDB:Q10570 ChiTaRS:CPSF1
GenomeRNAi:29894 NextBio:52452 ArrayExpress:Q10570 Bgee:Q10570
CleanEx:HS_CPSF1 Genevestigator:Q10570 GermOnline:ENSG00000071894
Uniprot:Q10570
Length = 1443
Score = 131 (51.2 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 84/397 (21%), Positives = 168/397 (42%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + DE+Y +P+ E+ I+++ P S A +ELQ+ E + TV+
Sbjct: 1054 EKEFETIERDERYIHPQQEAFS----IQLISPVSWEAIPNARIELQEWEHVTCMKTVSLR 1109
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 1110 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 1169
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 1170 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 1226
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 1227 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 1286
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + L K S+V +
Sbjct: 1287 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGATEGLSKKSVVWENKHITWF 1338
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R+ V++V
Sbjct: 1339 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNV 1398
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1399 LDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLE 1435
Score = 91 (37.1 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 574 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 627
Score = 87 (35.7 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 24/106 (22%), Positives = 51/106 (48%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KIH--Q 103
++E S FG + S+A +L G+++D +++ ++ ++EY+P + +H +
Sbjct: 65 KLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAA 149
E + G + V + VDP GR + + +V R++ A
Sbjct: 125 EPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLA 170
Score = 85 (35.0 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 246 GVLVCAENFVIYKNQGHPD----VRAVIPRRADLP--AERGVLIVSAATHRQKTLFFF-- 297
GV+V A N ++Y NQ P + ++ P + GV I Q T +
Sbjct: 277 GVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCA--QATFISYDK 334
Query: 298 -LLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHA 353
++ + G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN
Sbjct: 335 MVISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSL 392
Query: 354 LYQFQAIGADPDVEA 368
L ++ +P A
Sbjct: 393 LLKYTEKLQEPPASA 407
Score = 50 (22.7 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDE 467
+I G G +L +L+ + + +LPG +WTV V E
Sbjct: 499 EIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRKE 545
Score = 45 (20.9 bits), Expect = 4.3e-12, Sum P(5) = 4.3e-12
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 130 MIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI-FAAIELDY 188
++ A Q VY LNRD A LT + K+H + F N + A+++L
Sbjct: 30 LVVAGTSQLYVYRLNRDAEA-LTKNDRSTEGKAHREKLELAASFSFFGNVMSMASVQL-- 86
Query: 189 SEADQDSTGQAASEAQKNLTFYE 211
+ A +D+ + +A+ ++ Y+
Sbjct: 87 AGAKRDALLLSFKDAKLSVVEYD 109
Score = 45 (20.9 bits), Expect = 2.4e-06, Sum P(4) = 2.4e-06
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 271 RRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTI 329
R+ +LP + VL+V+ + + + + L+ + + HD++ LK++ F +
Sbjct: 839 RQGELPLVKEVLLVALGSRQSRP--YLLVHVDQELLIYEAFPHDSQLGQGNLKVR-FKKV 895
Query: 330 P 330
P
Sbjct: 896 P 896
Score = 37 (18.1 bits), Expect = 1.0e-15, Sum P(6) = 1.0e-15
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR 42
MY PTG+ ++ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYR 42
>UNIPROTKB|G4N4E2 [details] [associations]
symbol:MGG_16867 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 EMBL:CM001233 GO:GO:0003676
RefSeq:XP_003712617.1 EnsemblFungi:MGG_16867T0 GeneID:12985117
KEGG:mgr:MGG_16867 Uniprot:G4N4E2
Length = 1183
Score = 144 (55.7 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 103/422 (24%), Positives = 183/422 (43%)
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGY------LFAASEFG 350
+LL +YG + +T++ S+ + + T+ + + K Y LF AS +G
Sbjct: 304 YLLADDYGGLHLLTIQVKQN--SDTAVDHMSTVQIGTTSRATKLVYSETNRTLFVASHYG 361
Query: 351 NHALYQFQAIGADPDVEASSSTLMETEEGFQPVF-FQPRGLKNLVRIEQVESLMPIMDMR 409
+ Y AD S L +T E P+ F + N E D +
Sbjct: 362 DSQFYDVNLF-ADAAKGESFLELRQTIENIAPILDFAVMDMGNR------EG-----DSQ 409
Query: 410 IANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAV--SQLPGVPSAVWTVKKNVNDE 467
+ N + +I T G SLR +R G+ + ++ V ++ GV + ++++K +D
Sbjct: 410 LGNEYSSGQARIVTASGAQKDGSLRSVRSGVGLEDIGVITDEISGV-TGLFSLKSYGSDV 468
Query: 468 FDAYIVVSFNNATLVLSI---GETVEEVSDSGFLDTT-PSLAVSLIGDDSLMQVHPSGIR 523
D +VVSF T V GE VEE+S LD + P+L V + + ++ V
Sbjct: 469 EDT-LVVSFLTETRVFRFDKQGE-VEELSQLQGLDISQPTLLVLGLDNGHVLYVTEEKAT 526
Query: 524 HIREDG--RINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMS 581
+G I+ W + I SN V++++ G +L+ + + ++ E E
Sbjct: 527 LFDAEGGVTISSWSPTSGKPITHASSNGRWVLLSVDGRKLVSLNIGLDLKV-SAESEERD 585
Query: 582 GD-VACLDIASVPEGRKRSRFLAVGSYDN-TIRILSLDPDDCMQILSVQSVSSPPESLLF 639
D ++C++ AS P AVG + + TI I+ L + Q ++ + ++++
Sbjct: 586 EDQISCVN-AS-PHLLDVG---AVGFWSSGTISIIDLKTLEATQTEKLRR--NEDDAVVA 638
Query: 640 LEVQ-ASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFS 698
EV A V + A+ P +LF++ +G + T V G LS +S LG R + F
Sbjct: 639 REVVLARVLPAEVAN-P-TLFVSK--DDGEVM-TFVYNDNGTLSSRKSVVLGTREAR-FR 692
Query: 699 VV 700
V+
Sbjct: 693 VL 694
Score = 108 (43.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 28/105 (26%), Positives = 51/105 (48%)
Query: 28 PEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIV 87
P +V+A+ LE+ R + G+++ S +FG I L R S+ D + VG+D +
Sbjct: 27 PSLVLAKTNRLEIWRRTDEGQLKLEHSQSVFGKIVMLQAVRPKDSETDMLFVGTDRFKYF 86
Query: 88 ILEYNP-SKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMI 131
EY+P ++ + + G+ R + VDP GR +++
Sbjct: 87 TAEYDPDTRELVTRQAISDLGEQFVREVSSRNRCIVDPSGRYMVL 131
Score = 91 (37.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 45/188 (23%), Positives = 81/188 (43%)
Query: 1029 WLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEE 1088
W TA H++ D+ AD GN+ V L ++ + ED ++ E G L NK+++
Sbjct: 1008 WSTAVSHLEGDSWIVADGDGNL--VVLLRNTAGVTLEDKRRMQMTSEFG-LGECVNKIQK 1064
Query: 1089 IVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQE 1148
++ + KA L G ++GTV ++L +DF +++E H+
Sbjct: 1065 VM-VETSANAPIVAKAFLSTTEGSIYLFGTVAPKFQSLL-------MDFQANMEAHVSS- 1115
Query: 1149 HPPLCGRDHMAYRSAYFPVKD------VIDGDLCEQFPTLSLDLQRKIADELDRTPGEIL 1202
PL +RS P ++ +DG+ E F + + Q I L T ++
Sbjct: 1116 --PLGELQFNQWRSFRNPEREGAGPERFLDGEFLEMFLDMEENTQIDICQGLSYTAEDMR 1173
Query: 1203 KKLEEIRN 1210
+ E++N
Sbjct: 1174 NLIGEMKN 1181
Score = 39 (18.8 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1094 VGDVVTSLQKASLVPGGGESVIYG 1117
V D++ S+ +PG G+S G
Sbjct: 954 VADIMKSITLLEYIPGVGKSAKTG 977
>UNIPROTKB|B4DG00 [details] [associations]
symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
HOVERGEN:HBG102355 Uniprot:B4DG00
Length = 451
Score = 204 (76.9 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 87/352 (24%), Positives = 158/352 (44%)
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR-NIVAGYI 922
++D + + NE A S+ + K+ T VGTA +P+ G I
Sbjct: 104 IIDQHTFEVLHAHQFLQNEYALSLVSCKL-GKDPNTYFIVGTA---MVYPEEAEPKQGRI 159
Query: 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KCENK 981
++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C +
Sbjct: 160 VVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHY 217
Query: 982 LFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039
N I+++ T D I VGD+ S Y+ E A D P W++A +D D
Sbjct: 218 ---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD 274
Query: 1040 TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDV 1097
GA+ N++ + +D + +E+ + E G + + E V H V
Sbjct: 275 NFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHGSLV 324
Query: 1098 VTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDH 1157
+ +L + S P G SV++GTV G +G + + S + ++ + + + +H
Sbjct: 325 MQNLGETS-TPTQG-SVLFGTVNGMIGLVTSLSE-SWYNLLLDMQNRLNKVIKSVGKIEH 381
Query: 1158 MAYRSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+RS + P IDGDL E F +S +++ L G +K+
Sbjct: 382 SFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 433
Score = 71 (30.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFR 68
+ FR
Sbjct: 62 AVMELFR 68
>UNIPROTKB|Q10569 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0006378 GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:X83097
IPI:IPI00713487 PIR:S57335 RefSeq:NP_777145.1 UniGene:Bt.4911
STRING:Q10569 PRIDE:Q10569 Ensembl:ENSBTAT00000011004 GeneID:282703
KEGG:bta:282703 CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
InParanoid:Q10569 OrthoDB:EOG4BCDM3 NextBio:20806363
ArrayExpress:Q10569 Uniprot:Q10569
Length = 1444
Score = 128 (50.1 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 83/397 (20%), Positives = 167/397 (42%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + DE+Y +P+ E+ CI+++ P S A +EL++ E + TV+
Sbjct: 1055 EKEFETIERDERYVHPQQEA----FCIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLR 1110
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 1111 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 1170
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 1171 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 1227
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 1228 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 1287
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + K S+V +
Sbjct: 1288 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGAAEGPSKKSVVWENKHITWF 1339
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R V++V
Sbjct: 1340 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNV 1399
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1400 LDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLE 1436
Score = 97 (39.2 bits), Expect = 6.0e-12, Sum P(6) = 6.0e-12
Identities = 67/358 (18%), Positives = 132/358 (36%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 933 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNINCPRGFLYFN 992
Query: 754 GNA-LRVFTIERL---GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 993 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTSTPCTRVPRMT 1052
Query: 810 AKKECFXXXXXXXXXXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKW--VSCIRVLDP 867
+++ F P+S E + E ++W V+C++ +
Sbjct: 1053 GEEKEFETIERDERYVHPQQEAFCIQL---ISPVSWEAIPNARIELEEWEHVTCMKTVSL 1109
Query: 868 RSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRF 927
RS T L+ A C + + T +G R ++ I +
Sbjct: 1110 RSEETVSGLK---GYVAAGTCLMQGEEV---------TCRG------RILIMDVIEVVP- 1150
Query: 928 VEEGKSL-----ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCEN 980
E G+ L ++L++ + +G ALC G L++ IG + L+ L L + +
Sbjct: 1151 -EPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDT 1209
Query: 981 KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF 1038
+L+ + ++S+ + I D+ +S +Y+ + L + + D+ P + +DF
Sbjct: 1210 QLYIHQMISVKNF---ILAADVMKSISLLRYQEESKTLSLVSRDAKP---LEVYSVDF 1261
Score = 91 (37.1 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 44 ENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KI 101
E+ ++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +
Sbjct: 64 EHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 123
Query: 102 H--QETFGKSGCRRIVPGQYLAVDPKGR-AVMI 131
H +E + G + V + VDP GR A M+
Sbjct: 124 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAML 156
Score = 90 (36.7 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 575 FLILSREDSTMILQTGQEIMELDASGFATQGPTVFAGNIGDNRYIVQVSPLGIR 628
Score = 81 (33.6 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 36/147 (24%), Positives = 65/147 (44%)
Query: 246 GVLVCAENFVIYKNQGHPD----VRAVIPRRADLP--AERGVLI-VSAATHRQKTLFFFL 298
GV++ A N ++Y NQ P + ++ P + GV I + A + +
Sbjct: 280 GVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMV 339
Query: 299 LQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALY 355
+ + G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN L
Sbjct: 340 ISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLL 397
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQP 382
++ +P +ST E + +P
Sbjct: 398 KYTEKLQEPP----ASTAREAADKEEP 420
Score = 48 (22.0 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDE 467
+I G G +L +L+ + + +LPG +WTV V E
Sbjct: 501 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRKE 547
Score = 48 (22.0 bits), Expect = 2.2e-11, Sum P(5) = 2.2e-11
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 130 MIGACEKQKLVYVLNRDTAA--RLTISSPLEAHKSHTIVYSICGIDCGFDNPI-FAAIEL 186
++ A Q VY LNRD+ A + S+ +AH+ H + F N + A+++L
Sbjct: 30 LVVAGTSQLYVYRLNRDSEAPTKNDRSTDGKAHREHREKLELVASFSFFGNVMSMASVQL 89
Query: 187 DYSEADQDSTGQAASEAQKNLTFYE 211
+ A +D+ + +A+ ++ Y+
Sbjct: 90 --AGAKRDALLLSFKDAKLSVVEYD 112
Score = 46 (21.3 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 271 RRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTI 329
R+ +LP + VL+V+ + +++ + L+ + + HD++ LK++ F +
Sbjct: 840 RQGELPLVKEVLLVALGSRQRRP--YLLVHVDQELLIYEAFPHDSQLGQGNLKVR-FKKV 896
Query: 330 P 330
P
Sbjct: 897 P 897
Score = 37 (18.1 bits), Expect = 4.1e-15, Sum P(6) = 4.1e-15
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR 42
MY PTG+ ++ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYR 42
>UNIPROTKB|F1PC28 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0006378 GO:GO:0003730
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY EMBL:AAEX03008966 ProteinModelPortal:F1PC28
Ensembl:ENSCAFT00000002514 Uniprot:F1PC28
Length = 1398
Score = 114 (45.2 bits), Expect = 6.3e-15, Sum P(5) = 6.3e-15
Identities = 81/397 (20%), Positives = 166/397 (41%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + D++Y +P+ E+ I+++ P S A +EL++ E + TV+
Sbjct: 1009 EKEFETIERDDRYIHPQQEAFS----IQLISPVSWEAIPNARIELEEWEHVTCMKTVSLR 1064
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 1065 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 1124
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 1125 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 1181
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 1182 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 1241
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + K S+V +
Sbjct: 1242 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGAAEGPSKKSVVWENKHITWF 1293
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R V++V
Sbjct: 1294 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNV 1353
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1354 LDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLE 1390
Score = 97 (39.2 bits), Expect = 3.6e-13, Sum P(5) = 3.6e-13
Identities = 67/358 (18%), Positives = 132/358 (36%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 887 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFN 946
Query: 754 GNA-LRVFTIERL---GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 947 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNMPCTRIPRMT 1006
Query: 810 AKKECFXXXXXXXXXXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKW--VSCIRVLDP 867
+++ F P+S E + E ++W V+C++ +
Sbjct: 1007 GEEKEFETIERDDRYIHPQQEAFSIQL---ISPVSWEAIPNARIELEEWEHVTCMKTVSL 1063
Query: 868 RSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRF 927
RS T L+ A C + + T +G R ++ I +
Sbjct: 1064 RSEETVSGLK---GYVAAGTCLMQGEEV---------TCRG------RILIMDVIEVVP- 1104
Query: 928 VEEGKSL-----ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCEN 980
E G+ L ++L++ + +G ALC G L++ IG + L+ L L + +
Sbjct: 1105 -EPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDT 1163
Query: 981 KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF 1038
+L+ + ++S+ + I D+ +S +Y+ + L + + D+ P + +DF
Sbjct: 1164 QLYIHQMISVKNF---ILAADVMKSISLLRYQEESKTLSLVSRDAKP---LEVYSVDF 1215
Score = 95 (38.5 bits), Expect = 6.3e-15, Sum P(5) = 6.3e-15
Identities = 31/149 (20%), Positives = 67/149 (44%)
Query: 44 ENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KI 101
E+ ++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +
Sbjct: 18 EHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 77
Query: 102 H--QETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEA 159
H +E + G + V + VDP GR + + +V R++ A E
Sbjct: 78 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEG 137
Query: 160 HKSHTIVYSICGIDCGFDNPIFAAIELDY 188
+S + I + G D + ++L +
Sbjct: 138 QRSSFLPSYIIDVR-GLDEKLLNIVDLQF 165
Score = 91 (37.1 bits), Expect = 6.3e-15, Sum P(5) = 6.3e-15
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 529 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 582
Score = 83 (34.3 bits), Expect = 6.3e-15, Sum P(5) = 6.3e-15
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 246 GVLVCAENFVIYKNQGHPDVRAVI------PRRADLPAERGVLI-VSAATHRQKTLFFFL 298
GV+V A N ++Y NQ P + L + GV I + A + +
Sbjct: 234 GVVVFAVNSLLYLNQSVPPYGVALNGLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMV 293
Query: 299 LQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALY 355
+ + G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN L
Sbjct: 294 ISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLL 351
Query: 356 QFQAIGADPDVEAS 369
++ +P A+
Sbjct: 352 KYTEKLQEPPASAA 365
Score = 48 (22.0 bits), Expect = 6.3e-15, Sum P(5) = 6.3e-15
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDE 467
+I G G +L +L+ + + +LPG +WTV V E
Sbjct: 455 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRKE 501
Score = 45 (20.9 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 271 RRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTI 329
R+ +LP + VL+V+ + + + + L+ + + HD++ LK++ F +
Sbjct: 794 RQGELPLVKEVLLVALGSRQSRP--YLLVHVDQELLIYEAFPHDSQLGQGNLKVR-FKKV 850
Query: 330 P 330
P
Sbjct: 851 P 851
>ZFIN|ZDB-GENE-040709-2 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation specific
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
"definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
Length = 1451
Score = 113 (44.8 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 82/399 (20%), Positives = 172/399 (43%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + DE+Y +P + DK+ I+++ P S A ++L++ E + TV
Sbjct: 1062 EKEFETIERDERYIHP--QQDKF--SIQLISPVSWEAIPNTRVDLEEWEHVTCMKTVALK 1117
Query: 894 DKE--HGT--LLAVGTA--KGLQFWPKRNIVAGYIHIYRFVEE-GKSL-----ELLHKTQ 941
+E G +A+GT +G + + I+ + + V E G+ L ++L++ +
Sbjct: 1118 SQETVSGLKGYVALGTCLMQGEEVTCRGRILI--LDVIEVVPEPGQPLTKNKFKVLYEKE 1175
Query: 942 VEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYV 999
+G ALC G L++ IG + L+ L L + + +L+ + + SI + I
Sbjct: 1176 QKGPVTALCHCSGFLVSAIGQKIFLWSLKDNDLTGMAFIDTQLYIHQMYSIKNF---ILA 1232
Query: 1000 GDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRL 1055
D+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ L
Sbjct: 1233 ADVMKSISLLRYQPESKTLSLVSRDAKPLEVYSIEFMVDNNQLGFLVSDRDKNLMVYMYL 1292
Query: 1056 PQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVI 1115
P+ ++ GG + N + + + + + K +L
Sbjct: 1293 PE------AKESFGGMRLLRRADFN-VGSHVNAFWRMPCRGTLDTANKKALTWDNKHITW 1345
Query: 1116 YGTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKD 1169
+ T+ G +G +L + + + M H L + H R+ VK+
Sbjct: 1346 FATLDGGVGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHCDRRTLQNAVKN 1405
Query: 1170 VIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
++DG+L ++ LS + ++A ++ TP IL L EI
Sbjct: 1406 ILDGELLNKYLYLSTMERSELAKKIGTTPDIILDDLLEI 1444
Score = 95 (38.5 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 29/109 (26%), Positives = 56/109 (51%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KIH--Q 103
++E + S +FG + S+A +L G+ +D +++ ++ ++EY+P + +H +
Sbjct: 65 KLEQVASFSLFGNVMSMASVQLVGTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGR-AVMI--GACEKQKLVYVLNRDTAA 149
E + G + V + VDP+ R AVM+ G C +V +DT A
Sbjct: 125 EPELRDGFVQNVHIPMVRVDPENRCAVMLVYGTC---LVVLPFRKDTLA 170
Score = 93 (37.8 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 577 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVYAGNIGDNKYIIQVSPMGIR 630
Score = 77 (32.2 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 39/164 (23%), Positives = 66/164 (40%)
Query: 226 PVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRAD-------LPAE 278
P D M V P GG V+V A N ++Y NQ P + + P E
Sbjct: 262 PFDCNQVMAVPKPIGG-----VVVFAVNSLLYLNQSVPPFGVSLNSLTNGTTAFPLRPQE 316
Query: 279 RGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASM 335
+ + + T ++ + G+I+ +TL D + ++ +FD +T M
Sbjct: 317 EVKITLDCSQASFITSDKMVISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTCM 374
Query: 336 CVLKSGYLFAASEFGNHALYQF-QAIGADPDVEASSSTLMETEE 378
++ GYLF S GN L ++ + + P E + E +E
Sbjct: 375 MTMEPGYLFLGSRLGNSLLLRYTEKLQETPMEEGKENEEKEKQE 418
Score = 46 (21.3 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 716 LGYIHRGRFLLTPLSYETLEYAASFSSDQ 744
LGY H +LL + E L Y A F DQ
Sbjct: 862 LGYNHSRPYLLAHVEQELLIYEA-FPYDQ 889
Score = 46 (21.3 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTV 460
++ G G +L +L+ + + +LPG +WTV
Sbjct: 501 EVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHD-MWTV 540
Score = 40 (19.1 bits), Expect = 1.6e-14, Sum P(7) = 1.6e-14
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR 42
MY PT + A+ NF ++ +VVA L + R
Sbjct: 1 MYAVYRQAHPPTAVEFAVYCNFISSQEKNLVVAGTSQLYVYR 42
>MGI|MGI:2679722 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor
1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 MGI:MGI:2679722 GO:GO:0006378
GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY CTD:29894
HOGENOM:HOG000007904 HOVERGEN:HBG051105 OrthoDB:EOG4BCDM3
EMBL:AF322193 EMBL:BC056388 IPI:IPI00110363 RefSeq:NP_001157645.1
RefSeq:NP_444423.1 UniGene:Mm.45141 ProteinModelPortal:Q9EPU4
STRING:Q9EPU4 PhosphoSite:Q9EPU4 PaxDb:Q9EPU4 PRIDE:Q9EPU4
Ensembl:ENSMUST00000071898 GeneID:94230 KEGG:mmu:94230
UCSC:uc007wky.2 InParanoid:Q9EPU4 NextBio:352239 Bgee:Q9EPU4
CleanEx:MM_CPSF1 Genevestigator:Q9EPU4
GermOnline:ENSMUSG00000034022 Uniprot:Q9EPU4
Length = 1441
Score = 115 (45.5 bits), Expect = 5.7e-14, Sum P(5) = 5.7e-14
Identities = 81/397 (20%), Positives = 166/397 (41%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + D++Y +P+ E+ I+++ P S A +EL++ E + TV+
Sbjct: 1052 EKEFEAIERDDRYIHPQQEAFS----IQLISPVSWEAIPNARIELEEWEHVTCMKTVSLR 1107
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 1108 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 1167
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 1168 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 1224
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 1225 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 1284
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + K S+V +
Sbjct: 1285 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGAAEGPSKKSVVWENKHITWF 1336
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R V++V
Sbjct: 1337 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNV 1396
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1397 LDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLE 1433
Score = 98 (39.6 bits), Expect = 3.1e-12, Sum P(5) = 3.1e-12
Identities = 67/358 (18%), Positives = 132/358 (36%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 930 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFN 989
Query: 754 GNA-LRVFTIERL---GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 990 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMT 1049
Query: 810 AKKECFXXXXXXXXXXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKW--VSCIRVLDP 867
+++ F P+S E + E ++W V+C++ +
Sbjct: 1050 GEEKEFEAIERDDRYIHPQQEAFSIQL---ISPVSWEAIPNARIELEEWEHVTCMKTVSL 1106
Query: 868 RSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRF 927
RS T L+ A C + + T +G R ++ I +
Sbjct: 1107 RSEETVSGLK---GYVAAGTCLMQGEEV---------TCRG------RILIMDVIEVVP- 1147
Query: 928 VEEGKSL-----ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCEN 980
E G+ L ++L++ + +G ALC G L++ IG + L+ L L + +
Sbjct: 1148 -EPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDT 1206
Query: 981 KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF 1038
+L+ + ++S+ + I D+ +S +Y+ + L + + D+ P + +DF
Sbjct: 1207 QLYIHQMISVKNF---ILAADVMKSISLLRYQEESKTLSLVSRDAKP---LEVYSVDF 1258
Score = 91 (37.1 bits), Expect = 5.7e-14, Sum P(5) = 5.7e-14
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 572 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 625
Score = 88 (36.0 bits), Expect = 5.7e-14, Sum P(5) = 5.7e-14
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KIH--Q 103
++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +H +
Sbjct: 65 KLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGR-AVMI 131
E + G + V + VDP GR A M+
Sbjct: 125 EPELRDGFVQNVHTPRVRVDPDGRCAAML 153
Score = 80 (33.2 bits), Expect = 5.7e-14, Sum P(5) = 5.7e-14
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 246 GVLVCAENFVIYKNQGHPD----VRAVIPRRADLP--AERGVLI-VSAATHRQKTLFFFL 298
GV++ A N ++Y NQ P + ++ P + GV I + A + +
Sbjct: 277 GVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMV 336
Query: 299 LQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALY 355
+ + G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN L
Sbjct: 337 ISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLL 394
Query: 356 QF 357
++
Sbjct: 395 KY 396
Score = 48 (22.0 bits), Expect = 5.7e-14, Sum P(5) = 5.7e-14
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDE 467
+I G G +L +L+ + + +LPG +WTV V E
Sbjct: 498 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRKE 544
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 271 RRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTI 329
R+ +LP + VL+V+ + + + + L+ + + HD++ LK++ F +
Sbjct: 837 RQGELPLVKEVLLVALGSRQSRP--YLLVHVDQELLIYEAFPHDSQLGQGNLKVR-FKKV 893
Query: 330 P 330
P
Sbjct: 894 P 894
Score = 44 (20.5 bits), Expect = 1.2e-09, Sum P(5) = 1.2e-09
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 130 MIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI-FAAIELDY 188
++ A Q VY LNRD A LT + K+H + F N + A+++L
Sbjct: 30 LVVAGTSQLYVYRLNRDAEA-LTKNDGSTEGKAHREKLELVASFSFFGNVMSMASVQL-- 86
Query: 189 SEADQDSTGQAASEAQKNLTFYE 211
+ A +D+ + +A+ ++ Y+
Sbjct: 87 AGAKRDALLLSFKDAKLSVVEYD 109
>UNIPROTKB|F5H775 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01015574
ProteinModelPortal:F5H775 SMR:F5H775 Ensembl:ENST00000537877
ArrayExpress:F5H775 Bgee:F5H775 Uniprot:F5H775
Length = 240
Score = 187 (70.9 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 65/238 (27%), Positives = 110/238 (46%)
Query: 486 GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR--INEWRTPGKRTIV 543
GE VEE GF+D + + L+Q+ + +R + ++ + ++EW+ P + I
Sbjct: 4 GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNIS 63
Query: 544 KVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLA 603
N QVV+A+ G L Y ++ +L ++ EM +VACLDI + + S A
Sbjct: 64 VASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTEMEHEVACLDITPLGDSNGLSPLCA 121
Query: 604 VGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PESLLFLEVQASVGGEDGADHPASLFL 660
+G + D + RIL L P ++L + + P S+L ++S H +L
Sbjct: 122 IGLWTDISARILKL-PS--FELLHKEMLGGEIIPRSILMTTFESS--------H----YL 166
Query: 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGY 718
L +G LF +++ TG LSD + LG +P L + + S RP + Y
Sbjct: 167 LCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY 224
>POMBASE|SPAC17H9.10c [details] [associations]
symbol:ddb1 "damaged DNA binding protein Ddb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006279 "premeiotic DNA replication" evidence=TAS] [GO:0006282
"regulation of DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007090 "regulation of S phase of mitotic cell cycle"
evidence=IMP] [GO:0034644 "cellular response to UV" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IGI] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0051445 "regulation of meiotic
cell cycle" evidence=IGI] [GO:0070912 "Ddb1-Ckn1 complex"
evidence=IDA] [GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IDA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143
PomBase:SPAC17H9.10c GO:GO:0005829 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0007049 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0034644
GO:GO:0040020 GO:GO:0042787 GO:GO:0007090 GO:GO:0006283
GO:GO:0006282 GO:GO:0006279 GO:GO:0070912 eggNOG:NOG247734
KO:K10610 OMA:CALGDGS PIR:T37876 RefSeq:NP_593580.1 IntAct:O13807
STRING:O13807 EnsemblFungi:SPAC17H9.10c.1 GeneID:2542207
KEGG:spo:SPAC17H9.10c OrthoDB:EOG473T0C NextBio:20803277
GO:GO:0070913 Uniprot:O13807
Length = 1072
Score = 117 (46.2 bits), Expect = 6.3e-12, Sum P(5) = 6.3e-12
Identities = 36/129 (27%), Positives = 61/129 (47%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRS 63
Y L +P+ I A+ F + ++VA+ LE+ EN+ R+ + S IF I +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN-RLCLITSANIFAKIVN 61
Query: 64 LAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKN-VFDKIHQETFGKSGCRRIVPGQYLAV 122
+ F+ S D+I+V +DS R L ++ + N V + I + + R G L V
Sbjct: 62 VKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLV 121
Query: 123 DPKGRAVMI 131
DP R + +
Sbjct: 122 DPFQRVICL 130
Score = 108 (43.1 bits), Expect = 6.3e-12, Sum P(5) = 6.3e-12
Identities = 48/207 (23%), Positives = 98/207 (47%)
Query: 387 PRGLKNLVRIEQVESLM---PIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVS 443
P KN ++E +++ + PI D I + ++ I T G +LRI+R + +
Sbjct: 339 PSITKNNHKLEILQNFVNIAPISDFIIDD--DQTGSSIITCSGAYKDGTLRIIRNSINIE 396
Query: 444 EMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIG-ETVEEVSDSGFLDTTP 502
+A+ ++ G+ ++V N +D YI +S T + + E V + + +
Sbjct: 397 NVALIEMEGIKD-FFSVSFRAN--YDNYIFLSLICETRAIIVSPEGVFSANHDLSCEEST 453
Query: 503 SLAVSLIGDDSLMQVHPSGIRHIREDGR-INEWRTPGKRTIVKVGSNRLQ-VVIALSGGE 560
++ G+ ++Q+ IR DG+ ++ W +P T GS+ V +A++GG
Sbjct: 454 IFVSTIYGNSQILQITTKEIRLF--DGKKLHSWISPMSITC---GSSFADNVCVAVAGGL 508
Query: 561 LIYFEVDMTGQLLEVEKHEMSGDVACL 587
+++FE G + EV +++ +V+ L
Sbjct: 509 ILFFE----G-ITEVGRYQCDTEVSSL 530
Score = 65 (27.9 bits), Expect = 6.3e-12, Sum P(5) = 6.3e-12
Identities = 35/191 (18%), Positives = 78/191 (40%)
Query: 620 DCMQILSVQSVSSPPESLLFLEVQAS-VGGEDGADHPASLFLNAGLQNGVLFRTVVDMVT 678
D + + Q S SL ++ S V + D +L+++ NG + + +
Sbjct: 546 DIIMLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTN--NGYVL--MFNFQN 601
Query: 679 GQLSDS--RSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEY 736
GQ+ + R LG+ P L + A+ L +P L Y + ++TPLS +
Sbjct: 602 GQVIEHSLRRNQLGVAPIILKHFDSKEKNAIFALGEKPQLMYYESDKLVITPLSCTEMLN 661
Query: 737 AASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIE 796
+S+ + ++ + + + + + + N + ++ PRR ++ ++
Sbjct: 662 ISSYVNPSLGVNMLYCTNSYISLAKMSEI-RSLNVQTVSVKGFPRRICSNSLFYFVLCMQ 720
Query: 797 TDQGALTAEER 807
++ T E+R
Sbjct: 721 LEESIGTQEQR 731
Score = 60 (26.2 bits), Expect = 6.3e-12, Sum P(5) = 6.3e-12
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
+++ E G ++K +E VS ++++ + + + L +LF S F N L Q
Sbjct: 279 YIVADESGMLYKFKALFTDETVS-MELEKLGESSIASCLIALPDNHLFVGSHFNNSVLLQ 337
Query: 357 FQAI 360
+I
Sbjct: 338 LPSI 341
Score = 50 (22.7 bits), Expect = 2.9e-10, Sum P(4) = 2.9e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 675 DMVTGQLSDSRSRFLGLRPPKLFSVVVGG 703
D++ G L +S LGLR P L +V GG
Sbjct: 1022 DLIDGSLIES---ILGLREPILNEIVNGG 1047
Score = 44 (20.5 bits), Expect = 6.3e-12, Sum P(5) = 6.3e-12
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 860 SCIRVLDPRSANTTCLLELQDN 881
S + V D +NT LL+LQDN
Sbjct: 972 SLMIVGDAGMSNTPLLLQLQDN 993
>RGD|1306406 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor 1,
160kDa" species:10116 "Rattus norvegicus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISO]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO] [GO:0006379
"mRNA cleavage" evidence=IEA;ISO] InterPro:IPR004871 Pfam:PF03178
RGD:1306406 GO:GO:0005634 GO:GO:0003676 EMBL:CH473950 KO:K14401
GeneTree:ENSGT00550000075040 CTD:29894 IPI:IPI00949657
RefSeq:NP_001124043.1 UniGene:Rn.40455 Ensembl:ENSRNOT00000066244
GeneID:366952 KEGG:rno:366952 UCSC:RGD:1306406 NextBio:690318
Uniprot:D4A0H5
Length = 1386
Score = 91 (37.1 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 568 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 621
Score = 88 (36.0 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KIH--Q 103
++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +H +
Sbjct: 65 KLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGR-AVMI 131
E + G + V + VDP GR A M+
Sbjct: 125 EPELRDGFVQNVHTPRVRVDPDGRCAAML 153
Score = 80 (33.2 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 246 GVLVCAENFVIYKNQGHPD----VRAVIPRRADLP--AERGVLI-VSAATHRQKTLFFFL 298
GV++ A N ++Y NQ P + ++ P + GV I + A + +
Sbjct: 277 GVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMV 336
Query: 299 LQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALY 355
+ + G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN L
Sbjct: 337 ISLKGGEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLL 394
Query: 356 QF 357
++
Sbjct: 395 KY 396
Score = 59 (25.8 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1157 HMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
H+ R V++V+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1328 HVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLE 1378
Score = 55 (24.4 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 34/185 (18%), Positives = 62/185 (33%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 926 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFN 985
Query: 754 GNA-LRVFTIERL---GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 986 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMT 1045
Query: 810 AKKECFXXXXXXXXXXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKW--VSCIRVLDP 867
+++ F P+S E + E ++W V+C++ +
Sbjct: 1046 GEEKEFEAIERDDRYIHPQQEAFSIQL---ISPVSWEAIPNARIELEEWEHVTCMKTVSL 1102
Query: 868 RSANT 872
RS T
Sbjct: 1103 RSEET 1107
Score = 54 (24.1 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 411 ANLFEEEAPQ----IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVND 466
A L EE +P+ I G G +L +L+ + + +LPG +WTV V
Sbjct: 481 AFLSEENSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRK 539
Query: 467 E 467
E
Sbjct: 540 E 540
Score = 44 (20.5 bits), Expect = 2.8e-06, Sum P(6) = 2.8e-06
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 130 MIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI-FAAIELDY 188
++ A Q VY LNRD A LT + K+H + F N + A+++L
Sbjct: 30 LVVAGTSQLYVYRLNRDAEA-LTKNDGSTEGKAHREKLELVASFSFFGNVMSMASVQL-- 86
Query: 189 SEADQDSTGQAASEAQKNLTFYE 211
+ A +D+ + +A+ ++ Y+
Sbjct: 87 AGAKRDALLLSFKDAKLSVVEYD 109
Score = 40 (19.1 bits), Expect = 1.9e-10, Sum P(7) = 1.9e-10
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR 42
MY PTG+ A+ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYR 42
>UNIPROTKB|F5H0Y5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 GO:GO:0016055
Gene3D:2.130.10.10 GO:GO:0003684 EMBL:AP003108 HGNC:HGNC:2717
ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909177
ProteinModelPortal:F5H0Y5 SMR:F5H0Y5 Ensembl:ENST00000539332
ArrayExpress:F5H0Y5 Bgee:F5H0Y5 Uniprot:F5H0Y5
Length = 204
Score = 158 (60.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 59/210 (28%), Positives = 104/210 (49%)
Query: 920 GYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLR-KC 978
G I ++++ +GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR +C
Sbjct: 12 GRIVVFQY-SDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTEC 69
Query: 979 ENKLFPNTIVSI--NTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI 1036
+ N I+++ T D I VGD+ S Y+ E A D P W++A +
Sbjct: 70 NHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 126
Query: 1037 DFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQF--HV 1094
D D GA+ N++ + +D + +E+ + E G + + E V H
Sbjct: 127 DDDNFLGAENAFNLFVCQ--KDSAATTDEERQHLQ---EVGLFH-----LGEFVNVFCHG 176
Query: 1095 GDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
V+ +L + S P G SV++GTV G +G
Sbjct: 177 SLVMQNLGETS-TPTQG-SVLFGTVNGMIG 204
>DICTYBASE|DDB_G0281585 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation
specificity factor 160 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] InterPro:IPR004871 Pfam:PF03178
dictyBase:DDB_G0281585 GenomeReviews:CM000152_GR GO:GO:0006378
EMBL:AAFI02000042 GO:GO:0003730 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 RefSeq:XP_640515.1
EnsemblProtists:DDB0233702 GeneID:8623125 KEGG:ddi:DDB_G0281585
InParanoid:Q54TS6 OMA:TSATIQD Uniprot:Q54TS6
Length = 1628
Score = 94 (38.1 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 54/192 (28%), Positives = 88/192 (45%)
Query: 851 PKAESDKWVSCIRVLDPR-SANTTCL--LELQDNEA--AFSICTVNFHDKEHGT----LL 901
P DK+ I+++DP N + LQD E A I ++ F + + T L
Sbjct: 1263 PILTDDKFQ--IKLIDPTIDWNWKFIDSFSLQDRETVLAMKIVSLKFTEPDGITRARPFL 1320
Query: 902 AVGTAK--GLQFWPKRNIVAGYI--HIYRFVEE--G-KSLELLHKTQVEGIPLALCQFQG 954
+GTA G K ++ I H +F E G K L LL++ + +G AL G
Sbjct: 1321 VIGTAFTFGEDTQCKGRVLVFEIVSHKTQFESEELGEKRLNLLYEKEQKGPVTALSSVNG 1380
Query: 955 RLLAGIGPVLRL--YDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYR 1012
LL IGP L + + G L + +++ I SI T ++ I +GD+ +S +F +++
Sbjct: 1381 LLLMTIGPKLTVNQFYTGSLVTLSFYDAQIY---ICSICTIKNYIVIGDMYKSVYFLQWK 1437
Query: 1013 RDENQLYIFADD 1024
D L + + D
Sbjct: 1438 -DNKTLNLLSKD 1448
Score = 79 (32.9 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 28/106 (26%), Positives = 53/106 (50%)
Query: 32 VARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEY 91
+ + K +EL +P +E ++ ++FG I S+A R S++D +++ +I +L+Y
Sbjct: 75 ITQKKKIEL-KPS----LELIIEKKLFGNIESMASVRYPNSERDSLILTFRDAKISVLDY 129
Query: 92 NPSKNVFD--KIH---QETFGKSGCRRIVPGQYLAVDPKGR-AVMI 131
+ F+ +H ++ F K G L VD + R AVM+
Sbjct: 130 DSDLLDFEIRSLHYFEKDEF-KGGRNHFKHPPLLKVDTQQRCAVML 174
Score = 78 (32.5 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 1107 VPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSA--- 1163
+P + VI+GT+ G L + + + F+ H++ + P G + YRS
Sbjct: 1508 LPKKEQLVIFGTLDGGLNVLRPLDEKIYLLFY-HIQSKLYYL-PQTAGLNPKQYRSFKSF 1565
Query: 1164 -----YFPV------KDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
+ P K ++DGDL +F +LS +R I++ ++ T EI++ L+++
Sbjct: 1566 SQNFHFSPSTFHQLPKFILDGDLISKFLSLSQSEKRLISNSINSTSDEIIESLKDV 1621
Score = 66 (28.3 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 400 ESLMPIMDMRIANLFEEEAP---QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSA 456
+S+ P D I E P ++ T G G S+ +L+ + + +LPG+ +
Sbjct: 595 QSIDPTYDETIQPNQPEYVPKTLELVTCSGYGKNGSISVLQNNIKPELVMAFELPGILN- 653
Query: 457 VWTV-KKNVNDE 467
VWTV K+ + +E
Sbjct: 654 VWTVYKEEIEEE 665
Score = 65 (27.9 bits), Expect = 1.1e-09, Sum P(5) = 1.1e-09
Identities = 33/141 (23%), Positives = 55/141 (39%)
Query: 233 MLVTVPGGGDGPSGVLVCAENFVIYKNQ-----------GHPDVRAVIPRRA-DLPAERG 280
MLV+VP + G LV N + Y NQ D +I + D P +
Sbjct: 352 MLVSVP---EPLGGALVITANIMFYVNQTSRYGLAVNEYASIDTSTIIGSQPFDFPIDDT 408
Query: 281 VLIVSAATHRQKTLFF----FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMC 336
+ +V R +F F+ + G++ L D V + + +T+ +C
Sbjct: 409 LNLVFTLD-RSNFVFLESDKFIGSLKGGELLIFHLISDGRSVQRIHVSKAGGSVLTSCIC 467
Query: 337 VLKSGYLFAASEFGNHALYQF 357
VL + +F S G+ L Q+
Sbjct: 468 VLSNNLIFLGSRLGDSLLLQY 488
Score = 46 (21.3 bits), Expect = 1.5e-06, Sum P(5) = 1.5e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 11 PTGIIAAINGNFSGTKTPEIVVARGKVLEL--LRPENSGRIETLVSTE 56
PTG+ I N + +V+A+ VL++ +R E + E + ++
Sbjct: 14 PTGVEQCIKANLINDDSINLVLAKTNVLQIYKIRYEKIEKYENVSDSQ 61
Score = 42 (19.8 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 555 ALSGGELIYFEVDMTGQLLE-VEKHEMSGDV--ACLDIAS 591
+L GGEL+ F + G+ ++ + + G V +C+ + S
Sbjct: 431 SLKGGELLIFHLISDGRSVQRIHVSKAGGSVLTSCICVLS 470
Score = 41 (19.5 bits), Expect = 0.00026, Sum P(5) = 0.00026
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 77 IVVGSDSGRIVILEYNPSKNVFDKIHQETF 106
I +GS G ++L+Y D++ E F
Sbjct: 474 IFLGSRLGDSLLLQYTEKSITDDQLEHENF 503
Score = 40 (19.1 bits), Expect = 3.9e-05, Sum P(4) = 3.9e-05
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 312 EHDNEHVSELKIKYFDTI 329
E++NE+ +E++IK D I
Sbjct: 919 ENENENENEIEIKDQDNI 936
>UNIPROTKB|J9P418 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00550000075040 EMBL:AAEX03008966
Ensembl:ENSCAFT00000043656 Uniprot:J9P418
Length = 1107
Score = 114 (45.2 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 81/397 (20%), Positives = 166/397 (41%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + D++Y +P+ E+ I+++ P S A +EL++ E + TV+
Sbjct: 718 EKEFETIERDDRYIHPQQEAFS----IQLISPVSWEAIPNARIELEEWEHVTCMKTVSLR 773
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 774 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 833
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 834 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 890
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 891 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 950
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + K S+V +
Sbjct: 951 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGAAEGPSKKSVVWENKHITWF 1002
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R V++V
Sbjct: 1003 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNV 1062
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1063 LDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLE 1099
Score = 97 (39.2 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 67/358 (18%), Positives = 132/358 (36%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 596 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFN 655
Query: 754 GNA-LRVFTIERL---GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 656 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNMPCTRIPRMT 715
Query: 810 AKKECFXXXXXXXXXXXXXXXXXXXXXENKYDPLSDEQYGYPKAESDKW--VSCIRVLDP 867
+++ F P+S E + E ++W V+C++ +
Sbjct: 716 GEEKEFETIERDDRYIHPQQEAFSIQL---ISPVSWEAIPNARIELEEWEHVTCMKTVSL 772
Query: 868 RSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRF 927
RS T L+ A C + + T +G R ++ I +
Sbjct: 773 RSEETVSGLK---GYVAAGTCLMQGEEV---------TCRG------RILIMDVIEVVP- 813
Query: 928 VEEGKSL-----ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCEN 980
E G+ L ++L++ + +G ALC G L++ IG + L+ L L + +
Sbjct: 814 -EPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDT 872
Query: 981 KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF 1038
+L+ + ++S+ + I D+ +S +Y+ + L + + D+ P + +DF
Sbjct: 873 QLYIHQMISVKNF---ILAADVMKSISLLRYQEESKTLSLVSRDAKP---LEVYSVDF 924
Score = 91 (37.1 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 471 YIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
++++S ++T++L G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 238 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 291
Score = 72 (30.4 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 304 GDIFKVTLEHDNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALYQFQAI 360
G+I+ +TL D + ++ +FD +T SM ++ GYLF S GN L ++
Sbjct: 8 GEIYVLTLITDG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEK 65
Query: 361 GADPDVEAS 369
+P A+
Sbjct: 66 LQEPPASAA 74
Score = 48 (22.0 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDE 467
+I G G +L +L+ + + +LPG +WTV V E
Sbjct: 164 EIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYD-MWTVIAPVRKE 210
>UNIPROTKB|F1RSN8 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0006378 GO:GO:0003730 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY
EMBL:CU468594 Ensembl:ENSSSCT00000006486 Uniprot:F1RSN8
Length = 1108
Score = 114 (45.2 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 81/397 (20%), Positives = 166/397 (41%)
Query: 837 ENKYDPLS-DEQYGYPKAESDKWVSCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFH 893
E +++ + D++Y +P+ E+ I+++ P S A +EL++ E + TV+
Sbjct: 719 EKEFETIDRDDRYIHPQQEAFS----IQLISPVSWEAIPNARIELEEWEHVTCMKTVSLR 774
Query: 894 DKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRFVE----EGKSL-----ELLHKTQVE 943
+E + L A G + G I I +E G+ L ++L++ + +
Sbjct: 775 SEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQK 834
Query: 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--LRKCENKLFPNTIVSINTYRDRIYVGD 1001
G ALC G L++ IG + L+ L L + + +L+ + ++S+ + I D
Sbjct: 835 GPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNF---ILAAD 891
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG---ADKFGNIY-FVRLPQ 1057
+ +S +Y+ + L + + D+ P + + + + G +D+ N+ ++ LP+
Sbjct: 892 VMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPE 951
Query: 1058 DVSDEIEEDPTGGKIKWEQGKLN-GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIY 1116
++ GG + + GA + + K S+V +
Sbjct: 952 ------AKESFGGMRLLRRADFHVGA--HVNTFWRTPCRGATDGPSKKSVVWENKHITWF 1003
Query: 1117 GTVMGSLGAMLAFSSRD--DVDFFSHLEMHMRQEHPPLCGRD----HMAYRSAYFPVKDV 1170
T+ G +G +L + + + M H L R H+ R V++V
Sbjct: 1004 ATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNV 1063
Query: 1171 IDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEE 1207
+DG+L ++ LS + ++A ++ TP IL L E
Sbjct: 1064 LDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLE 1100
Score = 86 (35.3 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 51/241 (21%), Positives = 97/241 (40%)
Query: 44 ENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFD--KI 101
E+ ++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +
Sbjct: 64 EHREKLELVASFSFFG-VMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 122
Query: 102 H--QETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEA 159
H +E + G + V + VDP GR + + +V R++ A E
Sbjct: 123 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEG 182
Query: 160 HKSHTIVYSICGIDCGFDNPIFAAIELDYS------------EADQDSTGQAASEAQKNL 207
+S + I + D + ++L + E +Q G+ A Q
Sbjct: 183 QRSSFLPSYIIDVRA-LDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QDTC 240
Query: 208 TFYELDLGLNHVSRK--WSE---PVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGH 262
+ + L + WS P D + V P GG V++ A N ++Y NQ
Sbjct: 241 SIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGG-----VVIFAVNSLLYLNQSV 295
Query: 263 P 263
P
Sbjct: 296 P 296
Score = 46 (21.3 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 271 RRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTI 329
R+ +LP + VL+V+ + +++ + L+ + + HD++ LK++ F +
Sbjct: 504 RQGELPLVKEVLLVALGSRQRRP--YLLVHVDQELLIYEAFPHDSQLGQGNLKVR-FKKV 560
Query: 330 P 330
P
Sbjct: 561 P 561
Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR 42
MY PTG+ ++ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYR 42
>UNIPROTKB|F5H581 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909251
ProteinModelPortal:F5H581 SMR:F5H581 Ensembl:ENST00000535147
ArrayExpress:F5H581 Bgee:F5H581 Uniprot:F5H581
Length = 267
Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 52/210 (24%), Positives = 93/210 (44%)
Query: 580 MSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PES 636
M +VACLDI + + S A+G + D + RIL L P ++L + + P S
Sbjct: 1 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLHKEMLGGEIIPRS 57
Query: 637 LLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
+L ++S H +L L +G LF +++ TG LSD + LG +P L
Sbjct: 58 ILMTTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVL 105
Query: 697 FSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNA 756
+ + S RP + Y + + + ++ + + Y +SD + + +
Sbjct: 106 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNST 165
Query: 757 LRVFTIERLGETFNETALPLRYTPRRFVLQ 786
L + TI+ + + T +PL +PR+ Q
Sbjct: 166 LTIGTIDEIQKLHIRT-VPLYESPRKICYQ 194
>WB|WBGene00022301 [details] [associations]
symbol:cpsf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 112 (44.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 38/159 (23%), Positives = 72/159 (45%)
Query: 421 IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
+ T G G +L + + L + S L G +W V + N E Y++VS +T
Sbjct: 479 LVTASGHGKNGALCVHQRSLRPEIITSSLLEGAEQ-LWAVGRKEN-ESHKYLIVSRVRST 536
Query: 481 LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSL-MQVHPSGIRHIREDGRINEWRTPGK 539
L+L +GE + E+ + F+ P++A + +L +QV + I + + ++ E
Sbjct: 537 LILELGEELVELEEQLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSN 596
Query: 540 RTIVKVGSNRLQVVIALSGGELIYFEVDMTG--QLLEVE 576
+++ V + G L+ +E+ M QL EV+
Sbjct: 597 FPVIQASIVDPYVALLTQNGRLLLYELVMEPYVQLREVD 635
Score = 65 (27.9 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 67/335 (20%), Positives = 130/335 (38%)
Query: 899 TLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE---------EGKSLELLHKTQVEGIPLAL 949
TLLA+GT + + +V G I + +E + +++L + +G L
Sbjct: 1125 TLLAMGTVNN---YGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGL 1181
Query: 950 CQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFC 1009
C G LL G+G + ++ L+ + + +++ R D +ES
Sbjct: 1182 CAINGLLLCGMGQKVFIWQFKDNDLMGISFLDMH-YYVYQLHSLRTIAIACDARESMSLI 1240
Query: 1010 KYRRDENQLYIFA-DDSVPRWLTAAHHIDFD-TMAG---ADKFGNIYFVRLPQDVSDEIE 1064
+++ D + I + DD A + D G +D+ GNI + + E
Sbjct: 1241 RFQEDNKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMF----NYAPEAP 1296
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDVVTSLQKASLVPGGGESVIYGTVMGS 1122
E GG+ + +N N + V+ H + + + + ++ ++ GS
Sbjct: 1297 ES-NGGERLTVRAAINIGTN-INAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGS 1354
Query: 1123 LGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAY--FPV------KDVIDGD 1174
G + + + L+ + P + G RSA P+ +++IDGD
Sbjct: 1355 FGFVRPLTEKS-YRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGD 1413
Query: 1175 LCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
+ EQ+ LSL + +A L I+ L ++R
Sbjct: 1414 VVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLR 1448
Score = 59 (25.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 79/353 (22%), Positives = 131/353 (37%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTG-SQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETF 106
++E + S + S+A R+ +D I++ D ++ I+ N + I F
Sbjct: 65 KLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTISLHAF 124
Query: 107 GKSGCRRIVPGQY----LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKS 162
R + + DP R AC LVY + A L + +
Sbjct: 125 ENEYLRDGFINHFQPPLVRSDPSNRCA---AC----LVYGKH---IAILPFHE--NSKRI 172
Query: 163 HTIVYSICGIDCGFDNPIFAAIELD-YSEAD--------QDSTGQAASEAQKNLTFYELD 213
H+ V + ID DN I + LD Y E Q + G+A T +
Sbjct: 173 HSYVIPLKQIDPRLDN-IADMVFLDGYYEPTILFLYEPIQTTPGRACVRYD---TMCIMG 228
Query: 214 LGLNHVSRK----WSE---PVDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQGHPDV 265
+ +N V R+ W P+D + L+ +P P G LV N V+Y NQ P
Sbjct: 229 VSVNIVDRQFAVVWQTANLPMD--CSQLLPIPK----PLGGALVFGSNTVVYLNQAVPPC 282
Query: 266 RAVI----------PRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTL--EH 313
V+ P + DL + L S + + + + + GD+F + L
Sbjct: 283 GLVLNSCYDGFTKFPLK-DLKHLKMTLDCSTSVYMEDGRI--AVGSRDGDLFLLRLMTSS 339
Query: 314 DNEHVSELKI-KYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPD 365
V L+ K ++T + S+ V G+LF S G+ L ++ + D
Sbjct: 340 GGGTVKSLEFSKVYET-SIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRD 391
Score = 53 (23.7 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 37 VLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKN 96
+L L+ G +++L ++++ S+A + LT ++ VGS G +LEY K
Sbjct: 332 LLRLMTSSGGGTVKSLEFSKVYET--SIA-YSLTVCAPGHLFVGSRLGDSQLLEYTLLKT 388
Query: 97 VFD 99
D
Sbjct: 389 TRD 391
Score = 48 (22.0 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 623 QILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNA 662
Q+ S+ + E + F + S+GG G D S NA
Sbjct: 653 QLTSISIYADASEIMKFAAAEKSMGGGGGGDGEVSTAENA 692
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 177 DNPIFAAIELDYSEADQDSTGQAASEAQKN 206
DN AA E++ E D + G A E Q +
Sbjct: 400 DNKDPAAAEIELDEDDMELYGGAIEEQQND 429
>UNIPROTKB|Q9N4C2 [details] [associations]
symbol:cpsf-1 "Probable cleavage and polyadenylation
specificity factor subunit 1" species:6239 "Caenorhabditis elegans"
[GO:0006378 "mRNA polyadenylation" evidence=NAS] [GO:0006379 "mRNA
cleavage" evidence=NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=NAS]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 112 (44.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 38/159 (23%), Positives = 72/159 (45%)
Query: 421 IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT 480
+ T G G +L + + L + S L G +W V + N E Y++VS +T
Sbjct: 479 LVTASGHGKNGALCVHQRSLRPEIITSSLLEGAEQ-LWAVGRKEN-ESHKYLIVSRVRST 536
Query: 481 LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSL-MQVHPSGIRHIREDGRINEWRTPGK 539
L+L +GE + E+ + F+ P++A + +L +QV + I + + ++ E
Sbjct: 537 LILELGEELVELEEQLFVTGEPTVAAGELSQGALAVQVTSTCIALVTDGQQMQEVHIDSN 596
Query: 540 RTIVKVGSNRLQVVIALSGGELIYFEVDMTG--QLLEVE 576
+++ V + G L+ +E+ M QL EV+
Sbjct: 597 FPVIQASIVDPYVALLTQNGRLLLYELVMEPYVQLREVD 635
Score = 65 (27.9 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 67/335 (20%), Positives = 130/335 (38%)
Query: 899 TLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE---------EGKSLELLHKTQVEGIPLAL 949
TLLA+GT + + +V G I + +E + +++L + +G L
Sbjct: 1125 TLLAMGTVNN---YGEEVLVRGRIILCEVIEVVPEPDQPTSNRKIKVLFDKEQKGPVTGL 1181
Query: 950 CQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFC 1009
C G LL G+G + ++ L+ + + +++ R D +ES
Sbjct: 1182 CAINGLLLCGMGQKVFIWQFKDNDLMGISFLDMH-YYVYQLHSLRTIAIACDARESMSLI 1240
Query: 1010 KYRRDENQLYIFA-DDSVPRWLTAAHHIDFD-TMAG---ADKFGNIYFVRLPQDVSDEIE 1064
+++ D + I + DD A + D G +D+ GNI + + E
Sbjct: 1241 RFQEDNKAMSIASRDDRKCAQPPMASQLVVDGAHVGFLLSDETGNITMF----NYAPEAP 1296
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQF--HVGDVVTSLQKASLVPGGGESVIYGTVMGS 1122
E GG+ + +N N + V+ H + + + + ++ ++ GS
Sbjct: 1297 ES-NGGERLTVRAAINIGTN-INAFVRLRGHTSLLQLNNEDEKEAIEQRMTTVFASLDGS 1354
Query: 1123 LGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAY--FPV------KDVIDGD 1174
G + + + L+ + P + G RSA P+ +++IDGD
Sbjct: 1355 FGFVRPLTEKS-YRRLHFLQTFIGSVTPQIAGLHIKGSRSAKPSQPIVNGRNARNLIDGD 1413
Query: 1175 LCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
+ EQ+ LSL + +A L I+ L ++R
Sbjct: 1414 VVEQYLHLSLYDKTDLARRLGVGRYHIIDDLMQLR 1448
Score = 59 (25.8 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 79/353 (22%), Positives = 131/353 (37%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTG-SQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETF 106
++E + S + S+A R+ +D I++ D ++ I+ N + I F
Sbjct: 65 KLECMFSCRLLNKCHSIAVARVPQLPDQDSILMTFDDAKLSIVSINEKERNMQTISLHAF 124
Query: 107 GKSGCRRIVPGQY----LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKS 162
R + + DP R AC LVY + A L + +
Sbjct: 125 ENEYLRDGFINHFQPPLVRSDPSNRCA---AC----LVYGKH---IAILPFHE--NSKRI 172
Query: 163 HTIVYSICGIDCGFDNPIFAAIELD-YSEAD--------QDSTGQAASEAQKNLTFYELD 213
H+ V + ID DN I + LD Y E Q + G+A T +
Sbjct: 173 HSYVIPLKQIDPRLDN-IADMVFLDGYYEPTILFLYEPIQTTPGRACVRYD---TMCIMG 228
Query: 214 LGLNHVSRK----WSE---PVDNGANMLVTVPGGGDGP-SGVLVCAENFVIYKNQGHPDV 265
+ +N V R+ W P+D + L+ +P P G LV N V+Y NQ P
Sbjct: 229 VSVNIVDRQFAVVWQTANLPMD--CSQLLPIPK----PLGGALVFGSNTVVYLNQAVPPC 282
Query: 266 RAVI----------PRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTL--EH 313
V+ P + DL + L S + + + + + GD+F + L
Sbjct: 283 GLVLNSCYDGFTKFPLK-DLKHLKMTLDCSTSVYMEDGRI--AVGSRDGDLFLLRLMTSS 339
Query: 314 DNEHVSELKI-KYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPD 365
V L+ K ++T + S+ V G+LF S G+ L ++ + D
Sbjct: 340 GGGTVKSLEFSKVYET-SIAYSLTVCAPGHLFVGSRLGDSQLLEYTLLKTTRD 391
Score = 53 (23.7 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 37 VLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKN 96
+L L+ G +++L ++++ S+A + LT ++ VGS G +LEY K
Sbjct: 332 LLRLMTSSGGGTVKSLEFSKVYET--SIA-YSLTVCAPGHLFVGSRLGDSQLLEYTLLKT 388
Query: 97 VFD 99
D
Sbjct: 389 TRD 391
Score = 48 (22.0 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 623 QILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNA 662
Q+ S+ + E + F + S+GG G D S NA
Sbjct: 653 QLTSISIYADASEIMKFAAAEKSMGGGGGGDGEVSTAENA 692
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(5) = 0.00030
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 177 DNPIFAAIELDYSEADQDSTGQAASEAQKN 206
DN AA E++ E D + G A E Q +
Sbjct: 400 DNKDPAAAEIELDEDDMELYGGAIEEQQND 429
>UNIPROTKB|F5GZY8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01011929
ProteinModelPortal:F5GZY8 SMR:F5GZY8 Ensembl:ENST00000542337
ArrayExpress:F5GZY8 Bgee:F5GZY8 Uniprot:F5GZY8
Length = 146
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 36/134 (26%), Positives = 59/134 (44%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI---HQETFGKSGCRRIVPGQ 118
+ FR G KD + + + ILEY S D I H + G R G
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETGI 120
Query: 119 YLAVDPKGRAVMIG 132
+DP+ R MIG
Sbjct: 121 IGIIDPECR--MIG 132
>UNIPROTKB|F5GYG8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01012348
ProteinModelPortal:F5GYG8 SMR:F5GYG8 Ensembl:ENST00000543627
ArrayExpress:F5GYG8 Bgee:F5GYG8 Uniprot:F5GYG8
Length = 109
Score = 103 (41.3 bits), Expect = 0.00028, P = 0.00028
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI 101
+ FR G KD + + + ILEY S D I
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDII 101
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1213 1192 0.00096 123 3 11 22 0.39 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 624 (66 KB)
Total size of DFA: 510 KB (2236 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 98.83u 0.16s 98.99t Elapsed: 00:00:06
Total cpu time: 98.87u 0.16s 99.03t Elapsed: 00:00:06
Start: Mon May 20 23:14:12 2013 End: Mon May 20 23:14:18 2013