BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000944
(1213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 1485 bits (3845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1227 (58%), Positives = 934/1227 (76%), Gaps = 29/1227 (2%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
G DGPSGVL+C+EN++ YKN G PD+R IPRR D P ERG++ V +ATH+ K++F
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LY
Sbjct: 300 FFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLY 359
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q +G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L
Sbjct: 360 QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLAN 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VS
Sbjct: 418 EDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 478 FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP
Sbjct: 538 TPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ GG + D
Sbjct: 598 GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGTEKQDE 653
Query: 655 PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654 LGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
+SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG
Sbjct: 714 AMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAV 773
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
FN+ A PL+YTPR+FV+ P+ ++IIETD A T A+ ++ +E EAAG E
Sbjct: 774 FNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833
Query: 825 NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
+ +EN L + +G PKA + +W S IRV++P NT L++L+ NEAA
Sbjct: 834 LA-AEMAAAFLNEN----LPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
FS+ F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILSP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEE 947
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
+P A+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QE
Sbjct: 948 VPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQE 1007
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
SF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++
Sbjct: 1008 SFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVD 1067
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1128 ILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEP 1187
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
+ Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 NKQKNVSEELDRTPPEVSKKLEDIRTR 1214
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1227 (58%), Positives = 934/1227 (76%), Gaps = 29/1227 (2%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
G DGPSGVL+C+EN++ YKN G PD+R IPRR D P ERG++ V +ATH+ K++F
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LY
Sbjct: 300 FFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLY 359
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q +G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L
Sbjct: 360 QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLAN 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VS
Sbjct: 418 EDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 478 FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP
Sbjct: 538 TPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ GG + D
Sbjct: 598 GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGTEKQDE 653
Query: 655 PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654 LGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
+SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG
Sbjct: 714 AMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAV 773
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
FN+ A PL+YTPR+FV+ P+ ++IIETD A T A+ ++ +E EAAG E
Sbjct: 774 FNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833
Query: 825 NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
+ +EN L + +G PKA + +W S IRV++P NT L++L+ NEAA
Sbjct: 834 LA-AEMAAAFLNEN----LPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
FS+ F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEE 947
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
+P A+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QE
Sbjct: 948 VPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQE 1007
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
SF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++
Sbjct: 1008 SFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVD 1067
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1128 ILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEP 1187
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
+ Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 NKQKNVSEELDRTPPEVSKKLEDIRTR 1214
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/1227 (58%), Positives = 934/1227 (76%), Gaps = 29/1227 (2%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
G DGPSGVL+C+EN++ YKN G PD+R IPRR D P ERG++ V +ATH+ K++F
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LY
Sbjct: 300 FFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLY 359
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q +G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L
Sbjct: 360 QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLAN 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+ PQ++ CGRGPRSSLR+LR GL VSEMAVS+LPG P+AVWTV++++ DEFDAYI+VS
Sbjct: 418 EDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 478 FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP
Sbjct: 538 TPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ GG + D
Sbjct: 598 GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGTEKQDE 653
Query: 655 PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654 LGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
+SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG
Sbjct: 714 AMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAV 773
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
FN+ A PL+YTPR+FV+ P+ ++IIETD A T A+ ++ +E EAAG E
Sbjct: 774 FNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833
Query: 825 NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
+ +EN L + +G PKA + +W S IRV++P NT L++L+ NEAA
Sbjct: 834 LA-AEMAAAFLNEN----LPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
FS+ F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEE 947
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
+P A+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QE
Sbjct: 948 VPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQE 1007
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
SF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++
Sbjct: 1008 SFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVD 1067
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
EDPTG K W++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1128 ILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEP 1187
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
+ Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 NKQKNVSEELDRTPPEVSKKLEDIRTR 1214
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 1480 bits (3832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1227 (58%), Positives = 931/1227 (75%), Gaps = 29/1227 (2%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY++TLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
+RSL FRLTG KDY+VVGSDSGRIVILEY+PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VVRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMIGA EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SE ++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
G DGPSGVL+C+EN++ YKN G PD+R IPRR D P ERG++ V +ATH+ K++F
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL QTE GDIFKVTLE D E V+E+++KYFDTIPV +MCVLK+G+LF +SEFGNH LY
Sbjct: 300 FFLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLY 359
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q +G D D E S+ M EEG FFQPR LKNLV +++ ESL PIM +IA+L
Sbjct: 360 QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLAN 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+ PQ++ CGRGPRS+LR+LR GL VSEMAVS+LPG P+AVWTV+++V DEFDAYI+VS
Sbjct: 418 EDTPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+G+D+L+QV+P GIRHIR D R+NEW+
Sbjct: 478 FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
TPGK+TI++ N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP
Sbjct: 538 TPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ GG + D
Sbjct: 598 GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGVEKQDE 653
Query: 655 PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654 LGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
+SSR WL Y ++ RF LTPLSYETLEYA+ F+S+QC EG+V+++ N LR+ +E+LG
Sbjct: 714 AMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAV 773
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
FN+ A PL+YTPR+FV+ P+ +++IETD A T A+ ++ +E EAAG E
Sbjct: 774 FNQVAFPLQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833
Query: 825 NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
+ +EN L + +G PKA S +W S +R+++P NT L++L+ NEAA
Sbjct: 834 LA-AEMAAAFLNEN----LPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAA 888
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
FS+ F + + VG A+ + P R++ GYI+ YR V G LE LHKT VE
Sbjct: 889 FSVAICRFLNGGDDWYVLVGVARDMILNP-RSVGGGYIYTYRIVGGGDKLEFLHKTPVED 947
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
+PLA+ FQGR+L G+G +LR+YDLGKK+LLRKCENK PN + I+T R+ V D+QE
Sbjct: 948 VPLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQE 1007
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
S + +YRR+ENQL IFADD+ PRW+T A +D+DTMA ADKFGNI VRLP + SD+++
Sbjct: 1008 SLFWVRYRRNENQLIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVD 1067
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
EDPTG K W++G LNGA K E I+ +H+G+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALWDRGLLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F+S +D DFF HLEMHMR E PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1128 ILVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDP 1187
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 HKQKSVSEELDRTPPEVSKKLEDIRTR 1214
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 1479 bits (3830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1227 (58%), Positives = 932/1227 (75%), Gaps = 29/1227 (2%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LY+LTLQ+ TGI AI+GNFSGTK EIVV+RGK+LELLRP+ N+G++ TL++ E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSL FRLTG KDYIVVGSDSGRIVILEY PSKN+F+KIHQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRAVMI A EKQKLVY+LNRD AARLTISSPLEAHK++T+VY + G+D GF+NP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DY EAD D TG+AA+ Q+ LTFYELDLGLNHV RK+SEP++ N L+TVPG
Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG 240
Query: 240 GGDGPSGVLVCAENFVIYKNQG-HPDVRAVIPRR---ADLPAERGVLIVSAATHRQKTLF 295
G DGPSGVL+C+EN++ YKN G PD+R IPRR D P ERG++ V +ATH+ K++F
Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDP-ERGMIFVCSATHKTKSMF 299
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
FFL QTE GDIFK+TLE D + V+E+++KYFDT+PV A+MCVLK+G+LF ASEFGNH LY
Sbjct: 300 FFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLY 359
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q +G D D E S+ M EEG FFQPR LKNLV +++++SL PI+ +IA+L
Sbjct: 360 QIAHLGDD-DEEPEFSSAMPLEEG-DTFFFQPRPLKNLVLVDELDSLSPILFCQIADLAN 417
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
E+ PQ++ CGRGPRSSLR+LR GL VSE AVS+LPG P+AVWTV++++ DEFDAYI+VS
Sbjct: 418 EDTPQLYVACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAYIIVS 477
Query: 476 FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWR 535
F NATLVLSIGETVEEV+DSGFL TTP+L+ SL+GDD+L+QV+P GIRHIR D R+NEW+
Sbjct: 478 FVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWK 537
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLE-VEKHEMSGDVACLDIASVPE 594
TPGK+TIVK N+ QVVIAL+GGEL+YFE+D +GQL E E+ EMS DV C+ +A+VP
Sbjct: 538 TPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPP 597
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
G +RSRFLAVG DNT+RI+SLDP DC+Q LS+Q++ + PESL +E+ GG + D
Sbjct: 598 GEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEM----GGTEKQDE 653
Query: 655 PAS------LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
L+LN GLQNGVL RTV+D VTG LSD+R+R+LG RP KLF V + G+ A+L
Sbjct: 654 LGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVL 713
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
+SSR WL Y ++ RF LTPLSYETLE+A+ F+S+QC EG+V+++ N LR+ +E+LG
Sbjct: 714 AMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAV 773
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT----AEEREAAKKECFEAAGMGENG 824
FN+ A PL+YTPR+FV+ P+ ++IIETD A T A+ ++ +E EAAG E
Sbjct: 774 FNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERE 833
Query: 825 NGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAA 884
+ +EN L + +G PKA S +W S IRV++P NT L++L+ NEAA
Sbjct: 834 LA-AEMAAAFLNEN----LPESIFGAPKAGSGQWASVIRVMNPIQGNTLDLVQLEQNEAA 888
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
FS+ F + + VG AK L P R++ G+++ Y+ V G+ LE LHKT VE
Sbjct: 889 FSVAVCRFSNTGEDWYVLVGVAKDLILNP-RSVAGGFVYTYKLVNNGEKLEFLHKTPVEE 947
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
+P A+ FQGR+L G+G +LR+YDLGKK+LLRKCENK N I I T R+ V D+QE
Sbjct: 948 VPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQE 1007
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
SF + +Y+R+ENQL IFADD+ PRW+T A +D+DT+AGADKFGNI VRLP + +DE++
Sbjct: 1008 SFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVD 1067
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
EDPTG K ++G LNGA K E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G
Sbjct: 1068 EDPTGNKALRDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIG 1127
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++
Sbjct: 1128 ILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEP 1187
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNK 1211
+ Q+ +++ELDRTP E+ KKLE+IR +
Sbjct: 1188 NKQKNVSEELDRTPPEVTKKLEDIRTR 1214
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 1263 bits (3267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1261 (49%), Positives = 882/1261 (69%), Gaps = 58/1261 (4%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MYLY+LTLQ+PT + +I+GNFSGTK EIV+ G+ LEL+R + +G++++++ TE+FG
Sbjct: 1 MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGI 60
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
+RS+ FRLT KDYI+VGSDSGR+VILEYN KN FDKIHQETFG+SGCRRIVPGQYL
Sbjct: 61 VRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCRRIVPGQYL 120
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
AVDPKGRA MIGA EKQKLVY+LNRD++A LTISSPLEAHKS+TIV+S+CG+D GFDNPI
Sbjct: 121 AVDPKGRAFMIGAIEKQKLVYILNRDSSANLTISSPLEAHKSNTIVFSMCGVDVGFDNPI 180
Query: 181 FAAIELDYSEAD-----------QDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDN 229
FA I +DY+E D ++ + + +K LT+YELDLGLN+V RKWS+ VD+
Sbjct: 181 FATISVDYTEEDSSSGGGGGGSIEEMMDEDIGKKKKLLTYYELDLGLNNVVRKWSDQVDD 240
Query: 230 GANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATH 289
AN+++TVPGG +GP GVLV +E++++Y+NQ H +VR+ IPRR +GVLI+S ++H
Sbjct: 241 SANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAEVRSRIPRRYGSDPNKGVLIISHSSH 300
Query: 290 RQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEF 349
+QK +FFFL+Q+E+GD++K+TL++ + VSE+ + YFDTI + + VLK+G+LFAASEF
Sbjct: 301 KQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFDTIVLANCLTVLKNGFLFAASEF 360
Query: 350 GNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRG--------LKNLVRIEQVES 401
G+H LY F++IG + E + +E ++G ++F PR LKNL + S
Sbjct: 361 GDHTLYFFKSIGDEE--EEGQAKRLEDKDGH--LWFTPRNSCGTKMEELKNLEPTSHLSS 416
Query: 402 LMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVK 461
L PI+D ++ +L EE PQ+++LCG G SSL++LR GL+V+ + + LPGVPS +WTV
Sbjct: 417 LSPIIDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTVP 476
Query: 462 K----NVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQV 517
K N D+ D YIVVSF T VLS+G+T++E +SG L+TT +L V +GDD+++QV
Sbjct: 477 KSTSPNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLVKSMGDDAIIQV 536
Query: 518 HPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEK 577
P+G RHI+ D RINEWR PG++TIV+ +N+ Q+ IALSGGE+IYFE+D L+E+ K
Sbjct: 537 FPTGFRHIKSDLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASNLIEIIK 596
Query: 578 HEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCM-QILSVQSVSSPPES 636
++ D+AC++I+ +P+GR +RF+AV ++ IR+LSLD D+C+ Q+ + + ES
Sbjct: 597 KDLRRDIACIEISPIPKGRNMARFIAVSDWEGPIRVLSLDRDNCLGQVSMLDTDKVYIES 656
Query: 637 LLFLEVQASVGGEDGADHPAS-----------------------LFLNAGLQNGVLFRTV 673
L +E+Q + G + + LFL GL+NGV+ R
Sbjct: 657 LSIIEMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGLKNGVVKRAT 716
Query: 674 VDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYET 733
+D VTG+LSD R+R LG +P KLF V V G AML LSSR WL YI++G+ + PLS E
Sbjct: 717 LDSVTGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYINQGKLDIVPLSIEP 776
Query: 734 LEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMV 793
LE A++ SS+Q E +V+ + N + +F+I++LG+ FN+ + L TP+RF++ P+ ++
Sbjct: 777 LENASNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKLNATPKRFIIHPQTSYII 836
Query: 794 IIETDQGALTAE---EREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGY 850
I+ET+ T ++ + E E ++ ++ N+ +P ++
Sbjct: 837 ILETETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIEPF--KKLFK 894
Query: 851 PKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQ 910
PKA KW S I+++DP + + L L+D EA FS+CT +F + L VG +
Sbjct: 895 PKAGKGKWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGE-IFLVVGCVTDMV 953
Query: 911 FWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLG 970
PK + A ++++YRF++ GK LELL+KT+VE A+ QFQG+L+ G+G +R+YD+G
Sbjct: 954 LNPKSHKSA-HLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMG 1012
Query: 971 KKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWL 1030
KK+LLRKCE K PNTIV+I++ DR+ VGDIQES HF KY+R EN LY+FADD PRW+
Sbjct: 1013 KKKLLRKCETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWM 1072
Query: 1031 TAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIV 1090
T++ +D+DT+AGADKFGNI+ +RLP +SDE+EEDPTG K+K+E G LNGAP+K++ I
Sbjct: 1073 TSSVMLDYDTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIA 1132
Query: 1091 QFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHP 1150
F VGD VT+L K SLV GG E ++Y T+ G++GA++ F+SR+DVDFFS LEM+MR +
Sbjct: 1133 NFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCL 1192
Query: 1151 PLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRN 1210
PLCGRDH+AYRS YFPVK++IDGDLCEQF TL+ Q I++EL R+P E++KKLEEIR+
Sbjct: 1193 PLCGRDHLAYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRS 1252
Query: 1211 K 1211
+
Sbjct: 1253 Q 1253
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/1221 (51%), Positives = 826/1221 (67%), Gaps = 43/1221 (3%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M++YSLT+Q PT I AI G F+GTK +IV A G L + RP+ G+I + S ++FG
Sbjct: 7 MFMYSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR+LA FRL GS KDYI++GSDSGRI I+EY PS+N F++IH ETFGKSG RR+VPGQY
Sbjct: 67 IIRTLAAFRLAGSSKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRVVPGQY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRA +I + EK KLVYVLNR++ A LTISSPLEAHK T+V+++ +D G++NP
Sbjct: 127 LAVDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTVVFAMTALDVGYENP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
IFAA+E+DYSEADQD TG+A E++K L +YELDLGLNHV RKW++PVD A+ML VPG
Sbjct: 187 IFAALEVDYSEADQDPTGRAYEESEKLLVYYELDLGLNHVVRKWADPVDRTASMLFQVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRR--ADLPAERGVLIVSAATHRQKTLFFF 297
G DGPSGVLVCAE+ + Y++ R IPRR A ER IV+ H+ + FFF
Sbjct: 247 GADGPSGVLVCAEDNITYRHSNQDAFRVPIPRRIGATENPERKRSIVAGVMHKMRGAFFF 306
Query: 298 LLQTEYGDIFKVTL---EHDNEH----VSELKIKYFDTIPVTASMCVLKSGYLFAASEFG 350
LLQTE GD+FKVT+ E DN V LKIKYFDT+P+ +S+ +LKSG+L+ ASE G
Sbjct: 307 LLQTEDGDLFKVTIDMVEDDNGQLTGEVKRLKIKYFDTVPIASSLLILKSGFLYVASEAG 366
Query: 351 NHALYQFQAIGADPDVEASSSTLMETEEGF--QPVFFQPRGLKNLVRIEQVESLMPIMDM 408
NH YQF+ +G D + +S + +PVFFQPRG +NL +E + SL P++D
Sbjct: 367 NHHFYQFEKLGDDDEETEFNSENFPADLSVPCEPVFFQPRGAENLNLVETLNSLNPLIDS 426
Query: 409 RIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEF 468
+I NL E++APQI+T+ G G RSS R L+ GL VSE+ S+LP VPSAVWT K DEF
Sbjct: 427 KIVNLNEDDAPQIYTVSGSGARSSFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEF 486
Query: 469 DAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIRED 528
DAYI++SF N TLVLSIGETVEEV+D+GFL T P+LAV +G+DSL+QVHP GIRHI D
Sbjct: 487 DAYIILSFANGTLVLSIGETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRGIRHILAD 546
Query: 529 GRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EKHEMSGDVACL 587
R+NEW P R+IV +N QV +ALS GE++YFE+D G L E E+ +MSG V CL
Sbjct: 547 RRVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFEMDADGTLAEYDERRQMSGTVTCL 606
Query: 588 DIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVG 647
+ VPEGR RS FLAVG D+T+RILSLDPD ++ SVQ+++S P +L + + S
Sbjct: 607 SLGEVPEGRVRSSFLAVGCDDSTVRILSLDPDSTLENKSVQALTSAPSALNIMSMADSSS 666
Query: 648 GEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAM 707
G +L+L+ GL +GV RTV+D VTG+LSD+R+RFLG +P KLF V V G+ A+
Sbjct: 667 GG------TTLYLHIGLYSGVYLRTVLDEVTGELSDTRTRFLGAKPVKLFRVSVKGQTAV 720
Query: 708 LCLSSRPWLGY--IHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERL 765
L LSSRPWLGY I F+LTPL Y LE+ +FSS+QCVEG+V + LR+F+IE+L
Sbjct: 721 LALSSRPWLGYSDIQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMVGIQAQNLRIFSIEKL 780
Query: 766 GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGN 825
+ ++PL TPRR + P++ L +IE+D L+ R ++ NG
Sbjct: 781 DNNILQESIPLSNTPRRMLKHPEQPLFYVIESDNNVLSPATRARLIEDS-----KARNGE 835
Query: 826 GNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTT-CLLELQDNEAA 884
N+ L E +GYP+A + W SCI+++DP A +EL++NEAA
Sbjct: 836 TNV--------------LPPEDFGYPRA-TGHWASCIQIVDPLDAKAVISTIELEENEAA 880
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
S+ V F ++ T L VGTAK + P + G+IHIYRF E+GK LE +HKT+VE
Sbjct: 881 VSMAAVPFSSQDDETFLVVGTAKDMIVNPPSS-AGGFIHIYRFQEDGKELEFIHKTKVEE 939
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
PLAL FQGRLLAGIG LR+YDLG K+LLRKC+ ++ TIV + T RI V D++E
Sbjct: 940 PPLALLGFQGRLLAGIGSTLRIYDLGMKQLLRKCQAQVVSKTIVGLQTQGSRIVVSDVRE 999
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
S + Y+ +N L F DDSV RW T+ +D++T+AG DKFGN++ VR P+ S+E +
Sbjct: 1000 SVTYVVYKYQDNILIPFVDDSVSRWTTSTTMVDYETVAGGDKFGNLWLVRCPKKASEEAD 1059
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
ED +G + E+G L+GAPN+++ ++ + D+ TSL K LV GG + +++ G++G
Sbjct: 1060 EDGSGAHLIHERGYLHGAPNRLDLMIHTYTQDIPTSLHKTQLVAGGRDILVWTGFQGTIG 1119
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F SR+DVDFF +LEM + + PPL GRDH+ YRS Y PVK VIDGDLCE + L
Sbjct: 1120 MLVPFVSREDVDFFQNLEMQLASQCPPLAGRDHLIYRSYYAPVKGVIDGDLCEMYFLLPN 1179
Query: 1185 DLQRKIADELDRTPGEILKKL 1205
D + IA ELDR+ EI +K+
Sbjct: 1180 DTKMMIAAELDRSVREIERKI 1200
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3
SV=2
Length = 1209
Score = 1217 bits (3148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1228 (50%), Positives = 823/1228 (67%), Gaps = 43/1228 (3%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M++YSLT+Q PT I AI G F+GTK +IV A G L + RP+ G++ L + ++FG
Sbjct: 7 MFMYSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR+LA FRL GS KDYI++GSDSGRI I+EY PS+N F++IH ETFGKSG RR+VPGQY
Sbjct: 67 IIRTLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRVVPGQY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LAVDPKGRA +I + EK KLVYVLNR++ A LTISSPLEAHK T+VYS+ +D G++NP
Sbjct: 127 LAVDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTLVYSVVALDAGYENP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FAA+E+DYSE+DQD TG+A E +K L +YELDLGLNHV RKW++PVD ++ML VPG
Sbjct: 187 VFAALEVDYSESDQDPTGRAYEEVEKLLVYYELDLGLNHVVRKWTDPVDRTSSMLFQVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRR--ADLPAERGVLIVSAATHRQKTLFFF 297
G DGPSGVLVCAE+ + Y++ R IPRR A ER I + H+ + FFF
Sbjct: 247 GADGPSGVLVCAEDNITYRHSNQDAFRVPIPRRKGAMENPERKRCITAGVMHKMRGAFFF 306
Query: 298 LLQTEYGDIFKVTLE--HDNE-----HVSELKIKYFDTIPVTASMCVLKSGYLFAASEFG 350
LLQTE GD+FK+TL+ D++ V LKIKYFDT+P+ +S+ +LKSG+L+ A+E G
Sbjct: 307 LLQTEDGDLFKLTLDMVEDDKGQLTGEVKGLKIKYFDTVPLASSLLILKSGFLYVAAEGG 366
Query: 351 NHALYQFQAIGADPDVEASSSTLMETEEGF--QPVFFQPRGLKNLVRIEQVESLMPIMDM 408
NH YQF+ +G D + +S + PV+FQPRG +NL +E + SL P++D
Sbjct: 367 NHHFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDS 426
Query: 409 RIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEF 468
++ N+ E++APQIFT+ G G RS+ R L+ GL VSE+ S+LP VPSAVWT K DEF
Sbjct: 427 KVVNISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEF 486
Query: 469 DAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIRED 528
DAYIV+SF N TLVLSIGETVEEV+D+GFL + P+LAV +G+DSL+Q+HP GIRHI D
Sbjct: 487 DAYIVLSFANGTLVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHILAD 546
Query: 529 GRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EKHEMSGDVACL 587
R+NEW P R+IV +N QV +ALS GE++YFE+D G L E E+ +MSG V CL
Sbjct: 547 RRVNEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDADGSLAEYDERRQMSGTVTCL 606
Query: 588 DIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVG 647
+ VPEGR RS FLAVG D+T+RILSLDPD ++ SVQ++++ P +L + + S
Sbjct: 607 SLGEVPEGRVRSSFLAVGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAMADSSS 666
Query: 648 GEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAM 707
G +L+L+ GL +GV RT +D VTG+LSD+R+RFLG + KLF V V G+ A+
Sbjct: 667 GG------TTLYLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTAV 720
Query: 708 LCLSSRPWLGY--IHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERL 765
L LSSRPWLGY F+LTPL Y LE+ +FSS+QCVEG+V + G LR+F+IE+L
Sbjct: 721 LALSSRPWLGYSDTQTKGFMLTPLDYVGLEWGWNFSSEQCVEGMVGIQGQNLRIFSIEKL 780
Query: 766 GETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGN 825
+ ++PL YTPR F+ P++ L +IE D L+ A + E
Sbjct: 781 DNNMLQQSIPLAYTPRHFIKHPEEPLFYVIEADNNVLSP----ATRARLLE--------- 827
Query: 826 GNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC-LLELQDNEAA 884
D G D P E +GYP+ + W SCI+++DP A +EL++NEAA
Sbjct: 828 ---DSKARGGDTTVLPP---EDFGYPRG-TGHWASCIQIIDPLDAKAVVGAVELEENEAA 880
Query: 885 FSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944
SI V F ++ T L VGTAK + P + GYIHIYRF E+GK LE +HKT+VE
Sbjct: 881 VSIAAVPFTSQDDETFLVVGTAKDMTVNPPSS-AGGYIHIYRFQEDGKELEFIHKTKVEE 939
Query: 945 IPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQE 1004
PLAL FQGRLLAG+G VLR+YDLG K+LLRKC+ + P IV + T RI V D++E
Sbjct: 940 PPLALLGFQGRLLAGVGSVLRIYDLGMKQLLRKCQAAVAPKAIVGLQTQGSRIVVSDVRE 999
Query: 1005 SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIE 1064
S + Y+ +N L F DDS+ RW TAA +D++T AG DKFGN++ VR P+ S+E +
Sbjct: 1000 SVTYVVYKYQDNVLIPFVDDSIARWTTAATMVDYETTAGGDKFGNLWLVRCPKKASEEAD 1059
Query: 1065 EDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLG 1124
E+ +G + ++G L G PN++E ++ D+ TSL K LV GG + +++ G++G
Sbjct: 1060 EEGSGAHLIHDRGYLQGTPNRLELMIHVFTQDIPTSLHKTQLVAGGRDILVWTGFQGTIG 1119
Query: 1125 AMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSL 1184
++ F SR+DVDFF LEM + + PPL GRDH+ YRS Y PVK VIDGDLCEQ+ LS
Sbjct: 1120 ILVPFVSREDVDFFQSLEMQLASQCPPLAGRDHLIYRSYYAPVKGVIDGDLCEQYFLLSN 1179
Query: 1185 DLQRKIADELDRTPGEILKKLEEIRNKI 1212
D + IA ELDR+ EI +K+ ++R ++
Sbjct: 1180 DTKMMIAAELDRSVREIERKISDMRTRV 1207
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 1211 bits (3132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1235 (49%), Positives = 831/1235 (67%), Gaps = 49/1235 (3%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPEN-SGRIETLVSTEIFG 59
MYLY+LTLQ + A + G FSGT+ EI+VA+G LELLRP+ +G+++T++S + FG
Sbjct: 4 MYLYNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLELLRPDTQTGKVDTVLSHDAFG 63
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IRSLA FRLTG KDY++VGSDSGRIVILEY P N +K+HQETFG+SG RRIVPGQY
Sbjct: 64 VIRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSLEKVHQETFGRSGSRRIVPGQY 123
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LA DPKGRA MIGA EK LVY+LNRD A LTISSPLEAH+ I++ I G+D GF+NP
Sbjct: 124 LATDPKGRATMIGAMEKAMLVYILNRDAQANLTISSPLEAHRPSAIIHHIVGVDVGFENP 183
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FA +E+DYS++D D +G+A EA K LT+YELDLGLNHV RKWSEPVD +N+LV VPG
Sbjct: 184 LFACLEVDYSDSDHDPSGRAFEEAAKTLTYYELDLGLNHVVRKWSEPVDPRSNLLVQVPG 243
Query: 240 G-------GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRAD----LPAERGVLIVSAAT 288
G DGPSGVLVC+E+++ YK+Q P+ R IP+R + L RG LIV++
Sbjct: 244 GYNQNLEKWDGPSGVLVCSEDYITYKHQDQPEHRVPIPKRLNPVEKLSERRGTLIVASVL 303
Query: 289 HRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASE 348
H+ K FFFL+QTE GD+FK+T+EH ++ + LKIKYFDT+PV + + +L+SG+LF ASE
Sbjct: 304 HKMKNAFFFLVQTEDGDLFKITMEHQDDEIRSLKIKYFDTVPVASGLVILRSGFLFVASE 363
Query: 349 FGNHALYQFQAIGADPDVEASSSTLMETEEGF-----QPVFFQPRGLKNLVRIEQVESLM 403
+G LY FQ +G D D+ ST + E G Q F PR L NLV+++++ SL
Sbjct: 364 YGAQLLYSFQKLGDDDDLPEYISTDYD-ENGAGRRRPQLPTFTPRPLDNLVQVDEMPSLD 422
Query: 404 PIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKN 463
PI+D + N ++PQIF CGRG RSS ++LR GL V E S LPGVPSAVWT K
Sbjct: 423 PILDAKPLNPLAADSPQIFAACGRGARSSFKMLRHGLEVQEAVSSDLPGVPSAVWTTKIT 482
Query: 464 VNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIR 523
DE+D+YI++SF N TLVLSIGET+EEVSDSGFL ++ +LAV +G D+L+QVHP GIR
Sbjct: 483 QQDEYDSYIILSFVNGTLVLSIGETIEEVSDSGFLTSSSTLAVQQLGQDALLQVHPHGIR 542
Query: 524 HIREDGRINEWRTPG-----KRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EK 577
H+ D +INEW TP + TIV +N QVV+ALS EL+YFE+DM GQL E E+
Sbjct: 543 HVLVDKQINEWATPSLPNGRQTTIVATCTNERQVVVALSSNELVYFELDMDGQLNEYQER 602
Query: 578 HEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESL 637
M V + + PEGR+R+ +LAVG D+T+RI+SL+P+ + +S+Q++++P S+
Sbjct: 603 KAMGAGVLTMSMPDCPEGRQRTPYLAVGCDDSTVRIISLEPNSTLASISIQALTAPASSI 662
Query: 638 LFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLF 697
E+ + +H A+ F+N GLQNGVL RT++D VTGQL+D+R+RFLG + +L
Sbjct: 663 CMAEM---LDATIDRNH-ATTFVNIGLQNGVLLRTILDAVTGQLTDTRTRFLGSKAVRLI 718
Query: 698 SVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNAL 757
V G+AA++ LS+R WL Y ++ R PL ++ L++A SFS++ C EG++ + G+ L
Sbjct: 719 RTKVHGQAAVMALSTRTWLSYTYQDRLQFVPLIFDVLDHAWSFSAELCPEGLIGIVGSTL 778
Query: 758 RVFTIERLGETFNETALPLRYTPRRFVLQPKKK-LMVIIETDQGALTAEEREAAKKECFE 816
R+FTI L + ++ L YTPR+ P ++ L ++E + L+ A++ E
Sbjct: 779 RIFTIPSLASKLKQDSVALSYTPRKIANHPNEQGLFYVVEAEHRTLSP----GAQRRRTE 834
Query: 817 AAG--MGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC 874
G + + G +D L+ ++G +AE+ W SCIR +D A TT
Sbjct: 835 MLGKELKPHQRGVLD-------------LNPAEFGAIRAEAGNWASCIRAVDGVQAQTTH 881
Query: 875 LLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSL 934
LE+ DNEAAFSI V F E +L VG+A + P R+ Y+ YR ++ G+ L
Sbjct: 882 RLEMDDNEAAFSIAVVPFASAEKEVMLVVGSAVDVVLSP-RSCKKAYLTTYRLLDNGREL 940
Query: 935 ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYR 994
ELLHKT+V+ IPL L FQGRLLAGIG LR+YDLGKK+LLRKCEN+ FP +VS++
Sbjct: 941 ELLHKTEVDDIPLVLRAFQGRLLAGIGKALRIYDLGKKKLLRKCENRSFPTAVVSLDAQG 1000
Query: 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVR 1054
RI VGD+QES F Y+ EN+L FADD +P+++T +D+DT+A ADKFGNIY +R
Sbjct: 1001 SRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADKFGNIYVLR 1060
Query: 1055 LPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESV 1114
L + S ++EDPTG I E+ L GA +K + F VGD++TSL + ++V GG E +
Sbjct: 1061 LDGNTSRSVDEDPTGMTIVHEKPVLMGAAHKASLVAHFFVGDIITSLHRTAMVAGGREVL 1120
Query: 1115 IYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGD 1174
+Y + GS+GA++ F S++DVD S LE H+RQE+ + GRDH+AYRS+Y PVK VIDGD
Sbjct: 1121 LYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQENNSIVGRDHLAYRSSYAPVKSVIDGD 1180
Query: 1175 LCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
LCE F LS Q IA ELDR PGEI KKL ++R
Sbjct: 1181 LCETFGLLSPAKQNAIAGELDRKPGEINKKLAQLR 1215
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1232 (50%), Positives = 825/1232 (66%), Gaps = 53/1232 (4%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LYSLT+Q PT + A+ G FSGTK +I+ A G L LL+P+ G++ TL+S +IFG
Sbjct: 7 MFLYSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
+R++A FRL GS KDYI++ +DSGRI I+EY P N F +IH ETFGKSG RR++PGQY
Sbjct: 67 IVRAIASFRLAGSHKDYIILATDSGRITIIEYLPKTNKFQRIHLETFGKSGVRRVIPGQY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LA DPKGRA +I A EK KLVYVLNR++ A LTISSPLEAHK +V S+ +D G+ NP
Sbjct: 127 LAADPKGRACLISALEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVLSLVALDVGYANP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FAA+ELDY++ADQD TGQA E + L +YELDLGLNHV RKWS+ VD +++L VPG
Sbjct: 187 VFAALELDYTDADQDPTGQAREEVETQLVYYELDLGLNHVVRKWSDTVDRTSSLLFQVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRR--ADLPAERGVLIVSAATHRQKT---L 294
G DGPSGVLVC E V Y++ R IPRR A +R +IVS H+ K
Sbjct: 247 GNDGPSGVLVCGEENVTYRHSNQEAFRVPIPRRSGATEDPQRKRVIVSGVMHKLKGSAGA 306
Query: 295 FFFLLQTEYGDIFKVTLE-------HDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAAS 347
FFFLLQT+ GD+FKVT++ + V LKIKYFDTIPV S+C+LKSG+LFAAS
Sbjct: 307 FFFLLQTDDGDLFKVTIDMIEDSDGNPTGEVKRLKIKYFDTIPVATSLCILKSGFLFAAS 366
Query: 348 EFGNHALYQFQAIGADPDVEASSSTLMETE--EGFQPVFFQPRGLKNLVRIEQVESLMPI 405
EFGNH YQF+ +G D + SS T+ + PV+F PR L+NLV +E ++S+ P
Sbjct: 367 EFGNHHFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHPRPLENLVLVESIDSMNPQ 426
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+D ++ANL E+APQI+++CG G RS+ R+L+ GL VSE+ S+LPG PSAVWT K
Sbjct: 427 VDCKVANLTGEDAPQIYSVCGNGARSTFRMLKHGLEVSEIVASELPGTPSAVWTTKLTKY 486
Query: 466 DEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHI 525
D++DAYIV+SF N TLVLSIGETVEEVSDSGFL T P+LAV +G+D L+QVHP GIRHI
Sbjct: 487 DQYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTTAPTLAVQQMGEDGLIQVHPKGIRHI 546
Query: 526 REDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EKHEMSGDV 584
+ GR+NEW P R+IV +N QVVIALS GE++YFE+D G L E EK EMSG V
Sbjct: 547 VQ-GRVNEWPAPQHRSIVAATANENQVVIALSSGEIVYFEMDSDGSLAEYDEKKEMSGTV 605
Query: 585 ACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQA 644
L + VPEG KRS FLAVG D T+RILSLDPD +++ S+Q++++ P +L + ++
Sbjct: 606 TSLSVGQVPEGLKRSSFLAVGCDDCTVRILSLDPDSTLEMKSIQALTAAPSALSIMSMED 665
Query: 645 SVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGR 704
S GG ++L+L+ GL +GV RTV+D VTG+L+D+R +FLG +P +LF V V +
Sbjct: 666 SFGG-------STLYLHIGLHSGVYLRTVLDEVTGELTDTRQKFLGPKPTRLFQVSVQDQ 718
Query: 705 AAMLCLSSRPWLGY---IHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFT 761
+L LSSRPWLGY + +G F++TPLSY LEY +FSS+QC+EG+V + N LR+F+
Sbjct: 719 PCVLALSSRPWLGYTDPLTKG-FMMTPLSYTELEYGWNFSSEQCLEGMVGIHANYLRIFS 777
Query: 762 IERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMG 821
IE+LG+ + ++PL YTP+ V P++ IE+D L E R
Sbjct: 778 IEKLGDNMIQKSIPLTYTPKHLVKHPEQPYFYTIESDNNTLPPELRAKL----------- 826
Query: 822 ENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCL--LELQ 879
++Q NGD L E +GYP+A+ +W SCI ++DP S L ++L
Sbjct: 827 ------LEQQSNGDATV----LPPEDFGYPRAKG-RWASCISIIDPISEEPRVLQRIDLD 875
Query: 880 DNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939
+NEAA S V F +E + L VGT K + P R GYIH+YRF E+G+ LE +HK
Sbjct: 876 NNEAAVSAAIVPFASQEGESFLVVGTGKDMVLDP-RQFTEGYIHVYRFHEDGRDLEFIHK 934
Query: 940 TQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYV 999
T+VE PLAL FQGRLLAG+G LR+YDLG K+LLRK + + P IVS+ + +RI V
Sbjct: 935 TRVEEPPLALIPFQGRLLAGVGKTLRIYDLGLKQLLRKAQADVTPTLIVSLQSQGNRIIV 994
Query: 1000 GDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDV 1059
GD+Q+ + Y+ + N+L FADD++ RW T +D++++AG DKFGNIY VR P+ V
Sbjct: 995 GDLQQGITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERV 1054
Query: 1060 SDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTV 1119
S E +E + + + L+G PN++ V F+ D+ TS+ K SLV GG + +++ +
Sbjct: 1055 SQETDEPGSEIHLMHARNYLHGTPNRLSLQVHFYTQDLPTSICKTSLVVGGQDVLLWSGL 1114
Query: 1120 MGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQF 1179
G++G + F SR+DVDFF +LE HMR E PPL GRDH+ YR Y PVK VIDGDLCE+F
Sbjct: 1115 QGTVGVFIPFVSREDVDFFQNLENHMRAEDPPLAGRDHLIYRGYYTPVKGVIDGDLCERF 1174
Query: 1180 PTLSLDLQRKIADELDRTPGEILKKLEEIRNK 1211
L D ++ IA ELDR+ EI +K+ +IR +
Sbjct: 1175 SLLPNDKKQMIAGELDRSVREIERKISDIRTR 1206
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 1167 bits (3019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/1236 (48%), Positives = 816/1236 (66%), Gaps = 54/1236 (4%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPE-NSGRIETLVSTEIFG 59
M+LYSL++Q P+ I AI G FSGTK +IV A G L L RP+ G++ L+S ++FG
Sbjct: 7 MFLYSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR LA FRL GS KDY+++ SDSGRI I+EY P++N F +IH ETFGKSG RR+VPGQY
Sbjct: 67 IIRDLASFRLAGSSKDYLIIASDSGRITIVEYLPAQNRFSRIHLETFGKSGVRRVVPGQY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LA DPKGRA +I + E+ KLVYVLNR++ A LTISSPLEAHK+ T+ S+ +D G+ NP
Sbjct: 127 LAADPKGRACLIASVERCKLVYVLNRNSQAELTISSPLEAHKNGTLTLSLVALDVGYSNP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
+FAA+E+DYSE DQD G AA + L +YELDLGLNHV RKW + VD+ A+ML VPG
Sbjct: 187 VFAALEVDYSEVDQDPKGDAAQNVETVLNYYELDLGLNHVVRKWFDVVDSTASMLFQVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRR--ADLPAERGVLIVSAATHRQKT---L 294
G DGPSGVLVC E + Y++ R IPRR A R IVS H+ K
Sbjct: 247 GSDGPSGVLVCGEENITYRHSNQDAFRVPIPRRKGATEDPSRKRNIVSGVMHKLKGSAGA 306
Query: 295 FFFLLQTEYGDIFKVTLE--HDNE-----HVSELKIKYFDTIPVTASMCVLKSGYLFAAS 347
FFFLLQTE GD+FKVT++ D E V LKIKYFDTIPV+ ++C+LKSG+LF AS
Sbjct: 307 FFFLLQTEDGDLFKVTIDMVEDAEGNPTGEVRRLKIKYFDTIPVSNNLCILKSGFLFVAS 366
Query: 348 EFGNHALYQFQAIGAD-PDVEASSSTL-METEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
EFGNH YQF+ +G D ++E SS ++ +E ++PV+F PR +NL +E ++S+ P+
Sbjct: 367 EFGNHLFYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYPRPTENLALVESIDSMNPL 426
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
MD+++ANL EE+APQI+T+ G+G RS+ R+L+ GL V+E+ SQLPG PSAVWT K +
Sbjct: 427 MDLKVANLTEEDAPQIYTVSGKGARSTFRMLKHGLEVNEIVASQLPGTPSAVWTTKLRRD 486
Query: 466 DEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHI 525
DE+DAYIV+SF N TLVLSIGETVEEVSD+GFL + P+LAV +GDD L+QVHP GIRHI
Sbjct: 487 DEYDAYIVLSFTNGTLVLSIGETVEEVSDTGFLSSVPTLAVQQLGDDGLVQVHPKGIRHI 546
Query: 526 REDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EKHEMSGDV 584
R +G +NEW +P R+IV +N QV +ALS GE++YFE+D G L E EK EM G V
Sbjct: 547 R-NGVVNEWSSPQHRSIVAAATNERQVAVALSSGEIVYFEMDTDGSLAEYDEKKEMFGTV 605
Query: 585 ACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQA 644
L + VPEGR RS +LAVG D T+RILSLDP+ ++ SVQ++++ P +L + +
Sbjct: 606 TSLSLGEVPEGRLRSSYLAVGCDDCTVRILSLDPESTLESKSVQALTAAPSALSIMSM-- 663
Query: 645 SVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGR 704
ED + +L+L+ GL +GV RTV+D VTG+L+D+R +FLG + +LF V V R
Sbjct: 664 ----EDSSSGGTTLYLHIGLNSGVYLRTVLDEVTGELTDTRQKFLGPKAVRLFQVSVQKR 719
Query: 705 AAMLCLSSRPWLGY---IHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFT 761
+L LSSR WLG+ + +G F +TPL+YE LE+ +F S+QC EG+V V G LR+F
Sbjct: 720 TCVLALSSRSWLGFSDPVTKG-FTMTPLNYEELEWGWNFVSEQCEEGMVGVNGQFLRIFA 778
Query: 762 IERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMG 821
IE+LG+ + ++PL YTPR+ P +++ IE D L E RE AA
Sbjct: 779 IEKLGDNVIQKSIPLTYTPRKLAKHPTQRIFYTIEADNNTLAPELREQ-----LMAAPTA 833
Query: 822 ENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPR------SANTTCL 875
NG+ + L +++GYP+ +W SCI V+DP
Sbjct: 834 VNGDARV--------------LPPDEFGYPRGNG-RWASCISVVDPLGDGEELEPGVVQR 878
Query: 876 LELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLE 935
++L +NEAA S+ V+F ++ + L VGT K + P+R GYIH+YRF E+G+ LE
Sbjct: 879 IDLDNNEAALSMAVVSFASQDGESFLVVGTGKDMVVNPRR-FTEGYIHVYRFSEDGRELE 937
Query: 936 LLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRD 995
+HKT+VE P AL FQGRL+AGIG +LR+YDLG ++LLRK + ++ P IVS+NT
Sbjct: 938 FIHKTKVEEPPTALLPFQGRLVAGIGRMLRIYDLGLRQLLRKAQAEVAPQLIVSLNTQGS 997
Query: 996 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRL 1055
RI VGD+Q + Y+ + N+L FADD++ RW T +D+D+ AGADKFGN++ +R
Sbjct: 998 RIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGADKFGNLWILRC 1057
Query: 1056 PQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVI 1115
P+ S E +E + + + L+G N++ + + D+ TS+ K +LV GG E ++
Sbjct: 1058 PEKASQESDEPGSEVHLVHSRDYLHGTSNRLALMAHVYTQDIPTSICKTNLVVGGQEVLL 1117
Query: 1116 YGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDL 1175
+G G++G ++ F SR+D DFF LE H+R E PPL GRDH+ YR Y PVK VIDGDL
Sbjct: 1118 WGGFQGTIGVLIPFVSREDADFFQSLEQHLRSEDPPLAGRDHLMYRGCYVPVKGVIDGDL 1177
Query: 1176 CEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 1211
CE++ L D ++ IA ELDR+ EI +K+ +IR +
Sbjct: 1178 CERYTMLPNDKKQMIAGELDRSVREIERKISDIRTR 1213
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1237 (48%), Positives = 811/1237 (65%), Gaps = 51/1237 (4%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKV-LELLR-PENSGRIETLVSTEIF 58
M+L +LTL PT + A+ G+FSG+K+ EI+ RG LE+ + +G+++T+VSTE F
Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAF 60
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEY--NPSKNVFDKIHQETFGKSGCRRIVP 116
G IR++A FRL G KDYI+ SDSGR+ ILE+ +P+ + F+ ++QE FGKSG RRIVP
Sbjct: 61 GTIRNIAGFRLAGMTKDYILATSDSGRLSILEFVISPTPH-FESLYQEVFGKSGSRRIVP 119
Query: 117 GQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGF 176
GQ+LAVDPKGR+ ++G+ EK KLVYVLNR+T +L SSPLEAHK+HT+V I G+D G+
Sbjct: 120 GQFLAVDPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSPLEAHKNHTLVTHIVGVDQGY 179
Query: 177 DNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVT 236
DNP++AA+E DYSE+DQDSTG+A QK+LTFYELDLGLNHV RKWSEP D AN+LV
Sbjct: 180 DNPLYAALETDYSESDQDSTGEAYENTQKHLTFYELDLGLNHVVRKWSEPTDRRANLLVQ 239
Query: 237 VPGGGD-------GPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAE-----RGVLIV 284
VPGG + GPSGVLVC E+ +I+K+ R IPRR + + RG++IV
Sbjct: 240 VPGGQNANSDRFEGPSGVLVCTEDHIIWKHMDVEAHRIPIPRRRNPLVQRGDKSRGLIIV 299
Query: 285 SAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLF 344
SA H+ K FFFLLQ+E GD++KV +EH+ E V LKIKYFDT+PV S+C+LK GY++
Sbjct: 300 SAVMHKIKGAFFFLLQSEDGDLYKVWIEHNGEDVVALKIKYFDTVPVANSLCILKRGYIY 359
Query: 345 AASEFGNHALYQFQAIGADPDVEASSSTLMETE---EGFQP-VFFQPRGLKNLVRIEQVE 400
ASEF + LYQFQ++ D + SST +G P FF P+ L+NL+ ++ V
Sbjct: 360 VASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVP 419
Query: 401 SLMPIMDMRIANLF--EEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVW 458
SL PI D + NL + PQI+ CGRG RS+ R L+ GL V+EM S LPGVP+ VW
Sbjct: 420 SLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVW 479
Query: 459 TVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVH 518
T+K +DE+D+YIV+SF N TLVLSIGET+EEV+D+GFL + P+LAV +G+ L+QVH
Sbjct: 480 TLKLTEDDEYDSYIVLSFPNGTLVLSIGETIEEVNDTGFLSSGPTLAVQQLGNAGLLQVH 539
Query: 519 PSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EK 577
P G+RHIR R++EW P +TIV +NR QVVIALS EL+YFE+D G L E EK
Sbjct: 540 PYGLRHIRAADRVDEWPAPPGQTIVAATTNRRQVVIALSTAELVYFELDPEGSLSEYQEK 599
Query: 578 HEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESL 637
+ G+ C+ IA VPEGR+R+ FLAVG + T+ I+SL+PD + LS+Q++++PP S+
Sbjct: 600 KALPGNATCVTIAEVPEGRRRTSFLAVGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSI 659
Query: 638 LFLEV-QASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
E+ S+ + A++FLN GL NGVL RTVVD V G LSD+R RFLG +PPKL
Sbjct: 660 CLAEIFDTSID-----KNRATMFLNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKL 714
Query: 697 FSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNA 756
V G+ +++ SSR WL Y ++ PL Y+TLEYA S S+ C +G++ ++GN
Sbjct: 715 VRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDTLEYAWSLSAAMCPDGLIGISGNT 774
Query: 757 LRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGAL--TAEEREAAKKEC 814
LR+F I +LGE + + L YTPR+F+ P + +IE D +A ER +KE
Sbjct: 775 LRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFYMIEADHRTYSKSAIERIVKQKES 834
Query: 815 FEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC 874
E + L ++G P+A + W SC+RVLDP + T
Sbjct: 835 -----------------EGRRVDTLLLDLPANEFGRPRAPAGHWASCVRVLDPLANETIM 877
Query: 875 LLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSL 934
L+L ++EAAFSI F L VGT PK GY+ +Y E+G+ L
Sbjct: 878 TLDLDEDEAAFSIAIAYFERGGGEPFLVVGTGVKTTLQPK-GCKEGYLRVYAIKEQGRIL 936
Query: 935 ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYR 994
E LHKT+ + IPL L FQG LLAGIG LRLY++GKK LLRKCEN FP +V+IN
Sbjct: 937 EFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCENNGFPTAVVTINVQG 996
Query: 995 DRIYVGDIQESFHFCKYRR-DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFV 1053
RI VGD+QES +C YR QL IFADDS PRW+T +D++T+A DKFGNI+
Sbjct: 997 ARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFIN 1056
Query: 1054 RLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGES 1113
RL +S+++++DPTG I E+ L GA +K E I +++G VVTS+ K LV GG +
Sbjct: 1057 RLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIPLVAGGRDV 1116
Query: 1114 VIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDG 1173
++Y T+ G++GA++ F S DD++F S LEMHMR + L GRDH+AYR Y P+K V+DG
Sbjct: 1117 LVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGYYVPIKGVVDG 1176
Query: 1174 DLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRN 1210
DLCE F L Q+ IA +LDR+ G++LKKLE++R
Sbjct: 1177 DLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMRT 1213
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/1237 (48%), Positives = 811/1237 (65%), Gaps = 51/1237 (4%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKV-LELLR-PENSGRIETLVSTEIF 58
M+L +LTL PT + A+ G+FSG+K+ EI+ RG LE+ + +G+++T+VSTE F
Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAF 60
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEY--NPSKNVFDKIHQETFGKSGCRRIVP 116
G IR++A FRL G KDYI+ SDSGR+ ILE+ +P+ + F+ ++QE FGKSG RRIVP
Sbjct: 61 GTIRNIAGFRLAGMTKDYILATSDSGRLSILEFVISPTPH-FESLYQEVFGKSGSRRIVP 119
Query: 117 GQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGF 176
GQ+LAVDPKGR+ ++G+ EK KLVYVLNR+T +L SSPLEAHK+HT+V I G+D G+
Sbjct: 120 GQFLAVDPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSPLEAHKNHTLVTHIVGVDQGY 179
Query: 177 DNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVT 236
DNP++AA+E DYSE+DQDSTG+A QK+LTFYELDLGLNHV RKWSEP D AN+LV
Sbjct: 180 DNPLYAALETDYSESDQDSTGEAYENTQKHLTFYELDLGLNHVVRKWSEPTDRRANLLVQ 239
Query: 237 VPGGGD-------GPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAE-----RGVLIV 284
VPGG + GPSGVLVC E+ +I+K+ R IPRR + + RG++IV
Sbjct: 240 VPGGQNANSDRFEGPSGVLVCTEDHIIWKHMDVEAHRIPIPRRRNPLVQRGDKSRGLIIV 299
Query: 285 SAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLF 344
SA H+ K FFFLLQ+E GD++KV +EH+ E V LKIKYFDT+PV S+C+LK GY++
Sbjct: 300 SAVMHKIKGAFFFLLQSEDGDLYKVWIEHNGEDVVALKIKYFDTVPVANSLCILKRGYIY 359
Query: 345 AASEFGNHALYQFQAIGADPDVEASSSTLMETE---EGFQP-VFFQPRGLKNLVRIEQVE 400
ASEF + LYQFQ++ D + SST +G P FF P+ L+NL+ ++ V
Sbjct: 360 VASEFSDQNLYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVP 419
Query: 401 SLMPIMDMRIANLF--EEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVW 458
SL PI D + NL + PQI+ CGRG RS+ R L+ GL V+EM S LPGVP+ VW
Sbjct: 420 SLDPITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVW 479
Query: 459 TVKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVH 518
T+K +DE+D+YIV+SF N TLVLSIGET+EEV+D+GFL + P+LAV +G+ L+QVH
Sbjct: 480 TLKLTEDDEYDSYIVLSFPNGTLVLSIGETIEEVNDTGFLSSGPTLAVQQLGNAGLLQVH 539
Query: 519 PSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV-EK 577
P G+RHIR R++EW P +TIV +NR QVVIALS EL+YFE+D G L E EK
Sbjct: 540 PYGLRHIRAADRVDEWPAPPGQTIVAATTNRRQVVIALSTAELVYFELDPEGSLSEYQEK 599
Query: 578 HEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESL 637
+ G+ C+ IA VPEGR+R+ FLAVG + T+ I+SL+PD + LS+Q++++PP S+
Sbjct: 600 KALPGNATCVTIAEVPEGRRRTSFLAVGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSI 659
Query: 638 LFLEV-QASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
E+ S+ + A++FLN GL NGVL RTVVD V G LSD+R RFLG +PPKL
Sbjct: 660 CLAEIFDTSID-----KNRATMFLNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKL 714
Query: 697 FSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNA 756
V G+ +++ SSR WL Y ++ PL Y+TLEYA S S+ C +G++ ++GN
Sbjct: 715 VRANVQGQPSVMAFSSRTWLLYTYQDMLQTQPLIYDTLEYAWSLSAAMCPDGLIGISGNT 774
Query: 757 LRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGAL--TAEEREAAKKEC 814
LR+F I +LGE + + L YTPR+F+ P + +IE D +A ER +KE
Sbjct: 775 LRIFNIPKLGEKLKQDSTALTYTPRKFISHPFNSVFYMIEADHRTYSKSAIERIVKQKES 834
Query: 815 FEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC 874
E + L ++G P+A + W SC+RVLDP + T
Sbjct: 835 -----------------EGRRVDTLLLDLPANEFGRPRAPAGHWASCVRVLDPLANETIM 877
Query: 875 LLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSL 934
L+L ++EAAFSI F L VGT PK GY+ +Y E+G+ L
Sbjct: 878 TLDLDEDEAAFSIAIAYFERGGGEPFLVVGTGVKTTLQPK-GCKEGYLRVYAIKEQGRIL 936
Query: 935 ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYR 994
E LHKT+ + IPL L FQG LLAGIG LRLY++GKK LLRKCEN FP +V+IN
Sbjct: 937 EFLHKTKTDDIPLCLAGFQGFLLAGIGKSLRLYEMGKKALLRKCENNGFPTAVVTINVQG 996
Query: 995 DRIYVGDIQESFHFCKYRR-DENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFV 1053
RI VGD+QES +C YR QL IFADDS PRW+T +D++T+A DKFGNI+
Sbjct: 997 ARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGDKFGNIFIN 1056
Query: 1054 RLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGES 1113
RL +S+++++DPTG I E+ L GA +K E I +++G VVTS+ K LV GG +
Sbjct: 1057 RLDPSISEKVDDDPTGATILHEKSFLMGAAHKTEMIGHYNIGSVVTSITKIPLVAGGRDV 1116
Query: 1114 VIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDG 1173
++Y T+ G++GA++ F S DD++F S LEMHMR + L GRDH+AYR Y P+K V+DG
Sbjct: 1117 LVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGYYVPIKGVVDG 1176
Query: 1174 DLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRN 1210
DLCE F L Q+ IA +LDR+ G++LKKLE++R
Sbjct: 1177 DLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMRT 1213
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/1234 (43%), Positives = 772/1234 (62%), Gaps = 63/1234 (5%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENS-GRIETLVSTEIFG 59
++LYSLT+Q + ++ + SG K EIV+A L + + + + GR+ +++ FG
Sbjct: 7 LFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCFG 66
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQY 119
IR++A RLTG ++DY+VV SDSGRI ILEYN KN I+QETFGKSG RR+VPG+Y
Sbjct: 67 IIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGEY 126
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
LA+D KGRA MI + EK KLVYVLNRD+ A LTISSPLEAHK++ I + + G+D G+ NP
Sbjct: 127 LAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLDTGYANP 186
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG 239
IFAA+E+DYSE D DST +A + ++K L++YELDLGLNHV ++WS+ VD + ML+ VPG
Sbjct: 187 IFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKVVDRNSYMLIPVPG 246
Query: 240 GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAER---------------GVLIV 284
G DGPSG LV + ++ Y++ + I RR A G LIV
Sbjct: 247 GNDGPSGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSANDGPLIV 306
Query: 285 SAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE-HVSELKIKYFDTIPVTASMCVLKSGYL 343
SA H+ K FF+LLQT GD+ K+T+EHD + +V EL++KYFDT+P+ + +LK+G+L
Sbjct: 307 SAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTGFL 366
Query: 344 FAASEFGNHALYQFQAIGADPD-VEASSSTLM--ETEEGFQPVFFQPRGLKNLVRIEQVE 400
F A+EFGNH LYQF+ +G D D +E +S + E G + V F RGL+NL +E++
Sbjct: 367 FVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEEIP 426
Query: 401 SLMPIMDMRIANLFEE-EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWT 459
SL + D + EA Q++T+CGRG SSLR LR GL +E+ S+LPG P A+WT
Sbjct: 427 SLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIAIWT 486
Query: 460 VKKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHP 519
+K N D +D+YI++SF N TLVLSIGETVEE+SDSGFL + +L +G DSL+Q+HP
Sbjct: 487 LKLNQTDVYDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQIHP 546
Query: 520 SGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVD---MTGQLLEV- 575
GIR+IR + + +EW+ P +V+ N +Q+V+ALS GEL+YFE+ GQL E
Sbjct: 547 KGIRYIRANKQTSEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQ 606
Query: 576 EKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPE 635
E+ ++ +V L + V EG +RS F+ + D T+R+LSLD ++ LSVQ++SSP
Sbjct: 607 ERKTLTANVTSLALGPVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSVQALSSPAN 666
Query: 636 SLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPK 695
SL + + +V G ++L+L+ GL NGV RTV+D+ +GQL D+R+RFLG R K
Sbjct: 667 SLCIIPM--NVNG------VSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVK 718
Query: 696 LFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGN 755
++ + + + +L +SSR +L Y ++ L+P++Y +++A+SF+S+QC EG+V++ N
Sbjct: 719 IYPITMKNQNTVLAVSSRTFLAYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKN 778
Query: 756 ALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECF 815
L++FT++ L + PL TPR+ V P ++ I+++++ + F
Sbjct: 779 TLKIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFPVLYILQSERNF-----------DSF 827
Query: 816 EAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCL 875
+ A ENGD + Y ++ S WVS I V D S
Sbjct: 828 KYA------------QENGDVGSSYTKEKQNEH-----TSKSWVSFISVFDMISKKIIHE 870
Query: 876 LELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLE 935
L DNEAAFS+ F +++ L+A G+A + R G +YRF +EGK LE
Sbjct: 871 SPLGDNEAAFSMTAAFFKNRDEFFLVA-GSATNMDL-ECRTCSHGNFRVYRFHDEGKKLE 928
Query: 936 LLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRD 995
L+ T+++GIP+AL FQGR+LAG+G LR+YDLG K++LRK E P I I
Sbjct: 929 LISHTEIDGIPMALTPFQGRMLAGVGRFLRIYDLGNKKMLRKGELSAVPLFITHITVQAS 988
Query: 996 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRL 1055
RI V D Q S F Y+ ++N L FADD++ RW T +D+DT+AG DKFGNI+ +R
Sbjct: 989 RIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNIWLLRC 1048
Query: 1056 PQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVI 1115
P+ VS +E+ + K+ E+ LN P+K++ + F D+ TSLQK LV G E ++
Sbjct: 1049 PEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLL 1108
Query: 1116 YGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDL 1175
+ ++G++G F +++DV FF LE +R+E PPL GRDH+AYRS Y PVK VIDGDL
Sbjct: 1109 WTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYYAPVKCVIDGDL 1168
Query: 1176 CEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
CE + +L +Q IA+ELDRT E+ KK+E+ R
Sbjct: 1169 CEMYYSLPHPVQEMIANELDRTIAEVSKKIEDFR 1202
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1281 (35%), Positives = 709/1281 (55%), Gaps = 105/1281 (8%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTK-TPEIVVARGKVLELLRPE-NSGRIETLVSTEIF 58
+YLY+LT++ P+ IA+I G F G K + EI++A +EL + + N+G++E + F
Sbjct: 8 LYLYNLTIKHPSSCIASIVGQFLGNKKSQEIILANSTSIELWKADSNTGKLEKIYQQASF 67
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQ 118
G I+ + + RL G+QKDY+V+ SDSG++V+LE++ K F + QE K+G RR PG+
Sbjct: 68 GIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSKNGLRRTSPGE 127
Query: 119 YLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDN 178
YL VDP RA++IGA EK KLVY + + +L +SSPLE HT+ IC +D GF+N
Sbjct: 128 YLCVDPHNRAILIGAIEKNKLVYKVQSNDEGKLELSSPLETFSKHTLTLQICAMDTGFEN 187
Query: 179 PIFAAIELDYSEADQDS-TGQAASEAQKNLTFYELDLGLNHVSR-KWSEPVDNGANMLVT 236
P+FAAIE DY+ QD+ + A EA L +YELD GLNHV + K +E + ++ L+
Sbjct: 188 PMFAAIECDYNARQQDNGEEEDAGEASLLLNYYELDQGLNHVVKHKSNEKIPGSSSHLIP 247
Query: 237 VPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHR-QKTLF 295
+P D G+LVC+++ +IY + + IP R++ LIV+ HR +K F
Sbjct: 248 LP---DFIGGLLVCSKSTIIYAHPSKDKLYLPIPIRSN---TNETLIVNHVIHRLKKNNF 301
Query: 296 FFLLQTEYGDIFKVTLEHD--NEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHA 353
F L+Q++ GD FK+T++HD NE + + I YFDTIP++ S+ + KSG+LFA N
Sbjct: 302 FILVQSQLGDCFKITIDHDEVNESIENINITYFDTIPLSQSLNIFKSGFLFANVATNNKL 361
Query: 354 LYQFQAIGADPDVEASSSTLMETE-EGFQPVF--------FQPRGLKNLVRIEQVESLMP 404
YQF+ +G D +++TL + +F F+ GL+NL ++ +E+L P
Sbjct: 362 FYQFEKLGDD----NNNTTLQSCNFSDYNSIFELDISKRSFKVAGLENLALVDIMETLNP 417
Query: 405 IMDMRIANLFEEEAPQIFT-LCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKN 463
I D + E P F L S L+ L G++ + + S LP P+A+ T +
Sbjct: 418 ITDGALIETLRPEVPDPFKQLTALSSHSYLKTLTHGISTNTVVSSPLPIKPTAIHTTRIF 477
Query: 464 VNDEFDAYIVVS--FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSG 521
D Y+V+S ++ TLVLSIGE VEEV+DS F+ P++ V +G S++Q++ +G
Sbjct: 478 AESANDEYLVISSTLSSQTLVLSIGEVVEEVNDSQFVTNEPTINVQQVGKSSVVQIYSNG 537
Query: 522 IRHIRE-------DGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVD-MTGQLL 573
IRHI+ + + +W P +I++ +N QV+I LS E+ YFE+D QL+
Sbjct: 538 IRHIKHTMRNDTIEKKYTDWYPPAGISIIQASTNNEQVIIGLSNREICYFEIDPHDDQLV 597
Query: 574 EV-EKHEMSGDVACLDIASVPEGRK---RSRFLAVGSYDNTIRILSLDPDDCMQILSVQS 629
E E+ EMSG S K +S + VG D TI+ +SL P +C++I+++Q+
Sbjct: 598 EYQERLEMSGGSISALAISSSSISKLQRKSSYAIVGCSDETIQAISLKPHNCLEIVTLQA 657
Query: 630 VSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFL 689
+S+ S+ + H S ++ G++NG+ R +D +TG+LSD+R +FL
Sbjct: 658 LSANSSSIAMVP------------HGYSTSVHIGMENGLYVRVTIDEITGKLSDTRIQFL 705
Query: 690 GLRPPKLFSVVVG----GRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASF-SSDQ 744
G +P +L V+G + +L +SSRPW+GY +G F +TPL + ASF S D
Sbjct: 706 GSKPVQL--SVIGLPQLQQNGLLAISSRPWIGYYSKGDFKMTPLLNTNISNGASFYSEDI 763
Query: 745 CVEGVVSVAGNALRVFTI-----ERLGETFNE----TALPLRYTPRRF-VLQPKKKLMVI 794
EG+V + N L + TI E G N+ ++ LRY PR+ V P +
Sbjct: 764 GGEGIVGIDDNNLIILTISNTDGEESGLNVNDDFIINSVKLRYLPRKMNVDSPGDNEISS 823
Query: 795 IETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAE 854
+ + E+ N N+D E D++ YD +G+ ++
Sbjct: 824 SSYIYIIESEYGITSPFPVTVLPDNQKESTNENIDTPE--IDQDYYDA-----FGFERSR 876
Query: 855 SDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKE--HGTLLAVGTAKGLQFW 912
W SC+ V+D + +EL NE+A S+C + F ++ + L +GT + +F
Sbjct: 877 H-SWASCVEVIDFNNQEIVQTIELPKNESAISLCRLQFESQQTKNQEYLIIGTTQDQKFL 935
Query: 913 PKRNIVAGYIHIYRFVE-------EGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLR 965
P + Y++ + + + + LE +HKT+++ P A+ F GRLL G+ LR
Sbjct: 936 P-NSYSNNYLYTFTINKSSNKNKSQNEILEFVHKTELDYQPTAIIPFNGRLLVGMSNFLR 994
Query: 966 LYDLGKKRLLRKCENKL--FPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFAD 1023
LYDLG+++LLRK + + N I + RI VGD S F KY ENQ FAD
Sbjct: 995 LYDLGQRQLLRKASSNIEYLKNIIRLTHQGGSRIVVGDSSMSTTFVKYDSTENQFIPFAD 1054
Query: 1024 DSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAP 1083
D + R +TA +D+DT+ G DKFGNI+ R+P+ +S + ++D +++++ LNG+
Sbjct: 1055 DIMKRQITALVTLDYDTIIGGDKFGNIFVSRVPETISQQSDKD--WSLLRYQESYLNGSG 1112
Query: 1084 NKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEM 1143
++++ I +F++ D+ TS K SLV GG ES+IY + G+LG +L S+ ++V F L++
Sbjct: 1113 SRLKNICEFYLQDIPTSFTKGSLVMGGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQL 1172
Query: 1144 HMRQEHP-------------PLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKI 1190
+R+ L G+DH+ +RS Y PVK+V+DGDL E+F LS ++ +I
Sbjct: 1173 LLRKYFDYNFDDFDKDKNGYNLLGKDHLKFRSYYNPVKNVMDGDLIERFYELSQSMKIRI 1232
Query: 1191 ADELDRTPGEILKKLEEIRNK 1211
EL+RTP EI KK+ E+R++
Sbjct: 1233 GTELNRTPREIEKKISEMRHR 1253
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 611 bits (1576), Expect = e-174, Method: Compositional matrix adjust.
Identities = 407/1253 (32%), Positives = 666/1253 (53%), Gaps = 118/1253 (9%)
Query: 1 MYLYSLTLQQPTGIIAAINGNF-----SGTKTPEIVVARGKVLELLR-PENSGRIETLVS 54
+YLY+LTL+ P+ I++I G F S ++V+ L+L E +G++E S
Sbjct: 40 VYLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLELQSS 99
Query: 55 TEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEY-NPSKNVFDKIHQETFGKSGCRR 113
+ G I S+ + L S+ D +V+ SDSG + IL+Y N +K KI QE K+G R
Sbjct: 100 QNLLGIINSIEKICL--SEVDGVVITSDSGNLSILQYDNKTKKFISKI-QEPMTKNGWGR 156
Query: 114 IVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGID 173
G+ LA+DP+ R +++ A EK KL Y + +++ +SSPLEAH + I ++
Sbjct: 157 NYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGSKELSSPLEAHSKQVLCLKIVALN 216
Query: 174 CGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKW-----SEPVD 228
+NP+F A+EL E + + +YELD GLNHV +K S+P+
Sbjct: 217 TDHNNPLFGALEL-------------TPEKKCIINYYELDQGLNHVVKKKPNSSNSDPLP 263
Query: 229 NGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAT 288
N N L+ +PG G++VC N+ Y P + +PRR + +IV+ T
Sbjct: 264 NDVNYLIPLPGH---IGGMVVCGTNWCFYDKLDGPRIYLPLPRRNGQTQDS--IIVNHVT 318
Query: 289 H-RQKTLFFFLLQTEYGDIFKVTLEHD--NEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
H +K FF LLQ GD+FK+T+++D E + + I YFDTIP S+ + K+G+LFA
Sbjct: 319 HVLKKKKFFILLQNALGDLFKLTVDYDFDKEIIKNISITYFDTIPPALSLNIFKNGFLFA 378
Query: 346 ASEFGNHALYQFQAIGAD---PDVEASSS---TLMETEEGFQPVFFQPRGLKNLVRIEQV 399
+ LYQF+ +G D ++ +SS +L E F+ +GL NL I+ +
Sbjct: 379 NVLNNDKLLYQFEKLGDDLTEGELVINSSDYESLNSVRESVTS--FKLKGLDNLALIDVL 436
Query: 400 ESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWT 459
E+L PI D +I + ++ TL S ++ + G+ + + S LP P+ ++T
Sbjct: 437 ETLSPITDSKIID------SKLVTLSSH---SYVKSITHGVPTTTLVESPLPITPTDIFT 487
Query: 460 VKKNVNDEFDAYIVVS--FNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQV 517
K ++ D Y+V+S ++ TLVLSIGE VE+V DS F+ P++AV +G S++Q+
Sbjct: 488 TKLSLESANDEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVGIASVVQI 547
Query: 518 HPSGIRHIRE---DGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTG-QLL 573
+ +GI+H+R + + +W P TI +N QV+IALS ++YFE+D T QL+
Sbjct: 548 YSNGIKHVRTVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEIDATDDQLI 607
Query: 574 EVE-KHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSS 632
E + + E++ + + I ++S F +G D TI+++SL +C++I S+Q++S+
Sbjct: 608 EYQDRLEIATTITAMAIQE--NISEKSPFAIIGCSDETIQVVSLQEHNCLEIKSLQALSA 665
Query: 633 PPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLR 692
S G++ H G++NGV R +D + G LS+SR +++G +
Sbjct: 666 NSSS----LKMLKSSGKETHVH-------IGMENGVYARIKIDTINGNLSNSRVKYIGSK 714
Query: 693 PPKLFSVVVGGR-AAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASF-SSDQCVEGVV 750
P L + +L +SS PW+ Y++R F +TPL + +SF S D EG+V
Sbjct: 715 PVSLSVIKFSNEIEGILAISSAPWISYLYRDSFKITPLLEIDITNGSSFISEDIGGEGIV 774
Query: 751 SVAGNALRVFTIERLGETFNET------ALPLRYTPRRFVLQPKKKLMVIIETDQGALTA 804
+ N L +F++ + F+ + LRYTPR+ + T+ L
Sbjct: 775 GIKDNNLIIFSVGKEDSVFDPSQDLTIATTKLRYTPRKMI------------TNGNRLFI 822
Query: 805 EEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRV 864
E E + F+ N N D EN D E+ Y E +GY + + + W SCI+V
Sbjct: 823 SESEYNVQGPFKC-------NINGDVKENVD-EDYY-----EAFGY-EWKQNSWASCIQV 868
Query: 865 LDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTL----LAVGTAKGLQFWPKRNIVAG 920
+D +S L+L NE+ S+ V+F+ ++ L VG P
Sbjct: 869 VDSKSNQVIQSLQLDGNESIVSMSAVSFNKTSTPSVPASHLVVGVCTNQTILPNS---YD 925
Query: 921 YIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCEN 980
++Y F K L+L+HKT+++ IP L FQ +LL G +RLYD+G+K+LL+K
Sbjct: 926 KSYLYTFKIGKKHLQLVHKTELDHIPQVLENFQDKLLVASGNHIRLYDIGQKQLLKKSTT 985
Query: 981 KL-FPNTIVSINTYRDRIYVGDIQES-FHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF 1038
+ F I I +RI + D +S F K+ +NQ FADD + R +T+ ++D
Sbjct: 986 IIDFSTNINKIIPQTNRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDI 1045
Query: 1039 DTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVV 1098
DT+ G DKFGNI+ R+ +D+S + ++D T +K + G LN P K++ +++FH+GD++
Sbjct: 1046 DTLIGGDKFGNIFVTRIDEDISKQADDDWT--ILKTQDGILNSCPYKLQNLIEFHIGDII 1103
Query: 1099 TSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 1158
TS L G ESVIY + G++G ++ S+ +V+ +L+++M+Q L G+DH+
Sbjct: 1104 TSFNLGCLNLAGTESVIYTGLQGTIGLLIPLVSKSEVELLFNLQLYMQQSQNNLVGKDHL 1163
Query: 1159 AYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 1211
RS Y P+K+VIDGDL E+F + L+ +I+ +L+++ +I KKL ++RN+
Sbjct: 1164 KLRSYYNPIKNVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDLRNR 1216
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 283/850 (33%), Positives = 423/850 (49%), Gaps = 108/850 (12%)
Query: 3 LYSLTLQQPTGIIAAINGNFSGTKTPEIVVAR-GKVLELLRPENSGRIETLVSTEIFGA- 60
LY TL+ + +AI G FSG I ++ G L L + TL+ T +
Sbjct: 24 LYHSTLRS-SSPKSAICGRFSGKSQQVITLSSTGNALYLYSHDGDTGTVTLIHTHLTHCQ 82
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL 120
+R + FRL G +KDY++ SDSG I +LE+ N F +H+E +G+SG RR+VPG++L
Sbjct: 83 VREIRAFRLPGLKKDYVIASSDSGVISVLEFR--HNRFVSLHKEAYGRSGIRRVVPGEFL 140
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI 180
AVDPKGRA M+ + EK KLVYVLNR A + ISSPLEAH S + Y + D ++NP+
Sbjct: 141 AVDPKGRACMLASVEKSKLVYVLNRQ-GADIVISSPLEAHTS-CVTYFVVACDVAYENPV 198
Query: 181 FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG 240
FAAIE E + K L FYELDLGLNHV RK + N + + VPGG
Sbjct: 199 FAAIETPVGE----------TSPGKQLVFYELDLGLNHVIRKAPVDIPNSTSHVTAVPGG 248
Query: 241 GDGPSGVLVCAENFVIYK---------NQGHPDVRAVIPRRADLPAERGVLIVSAATHRQ 291
DGP GVLV + N +++ + +P+ A A +IV++A H+
Sbjct: 249 TDGPGGVLVFSTNAIVHHVAGAAGGASTGAAGSTKIALPKPA---AGYDNVIVASALHQS 305
Query: 292 KTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIP-VTASMCVLKSGYLFAASEFG 350
+ LFF++ Q GD+FK++ + + +H S L YF T+ V S+ +LKS ++ SE G
Sbjct: 306 RDLFFYIAQNTRGDLFKISRDSETQHWSVL---YFGTMSCVCTSLTILKSAHMVCLSEQG 362
Query: 351 NHALYQFQAIGADP------DVEASSSTLMETEEGFQ--PVFFQPRGLKNLVRIEQVESL 402
+ + F+++G D DV + S L T+ F+ PVF G V + +
Sbjct: 363 DSHMMFFESLGDDDAPENVYDVISPSPYLTVTQTLFELKPVFDSVVG----VNTTSSDHV 418
Query: 403 MPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKK 462
P+ P + +L R L+++ L S + S LP PS +WT++
Sbjct: 419 GPV-------------PNVLSLI-SATRGGLKLISHALKPSIIVASPLPEPPSKLWTMRD 464
Query: 463 NVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGI 522
D YIV+S+ NATLVL IG++V E + SG P+L +G S +QV G+
Sbjct: 465 GAGS--DKYIVLSYANATLVLEIGDSVVETTSSGLTLDKPTLHCGSVG-SSYVQVMTDGM 521
Query: 523 RHI-------REDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEV 575
I E +W P + I S+ QVV+ L+ L YFE D G L
Sbjct: 522 NVIPMSREGSSESLPATKWTAPSGQVICASSSSH-QVVLGLT-SSLFYFE-DTPGSELSA 578
Query: 576 E--KHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSP 633
+E+S + +A VP GR RS F+AV + D T+RI+S+DP+ + ++VQ + +
Sbjct: 579 YDGAYELSSPPTAVAVAPVPAGRVRSPFVAVATDDETVRIVSVDPESMFETVAVQGLMAT 638
Query: 634 PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRP 693
SL L V L+L+ GL NGV R +D +TG++ S S+F+GL
Sbjct: 639 ASSLALLSVG------------QVLYLHMGLANGVYVRVELDPLTGEIVGSWSKFVGLGR 686
Query: 694 PKLFSVVVGGRAAMLCLSS--RPWLGYIHRGR-------------FLLTPLSYETLEYAA 738
+ V GG ++L S + LG+++ F L +S E L+ A
Sbjct: 687 LSVVPVTCGGEESILVSSRGVKTCLGHVNATSDTWVPTGGNSAPFFALDAISGEPLDLAH 746
Query: 739 SFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMV----- 793
SF + C GV+ VAG+ L++FT+ + + E + L T +R + L +
Sbjct: 747 SFHTQDCPHGVIGVAGSTLKIFTVNT-AQKWTENEVKLEGTAKRLIQHDATTLTITQNPD 805
Query: 794 -IIETDQGAL 802
++ D GA+
Sbjct: 806 RLVSVDNGAV 815
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 34/315 (10%)
Query: 886 SICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGI 945
SIC V F D + AVG ++ P + +GYI I+ SL +H T+VE
Sbjct: 827 SICEVMFGDGKR--YFAVGGSR--DGSPGTSGTSGYISIF----SSSSLGHVHTTEVEAP 878
Query: 946 PLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPN-TIVSINTYRDRIYVGDIQE 1004
PLALC + G L+AGIG +RLY LG K++LRK + +L T ++ +R+ VGDI++
Sbjct: 879 PLALCAYNGLLVAGIGSQVRLYALGLKQVLRKAQIELSKRVTCLAHFAGSNRVAVGDIRQ 938
Query: 1005 SFHFCKYRRDENQ--LYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDE 1062
S C +++ +Y D + R +T +D++T+A D+FG +R+P + S
Sbjct: 939 SVTVCVVLEEDSGHVIYPLVCDKISRQVTCLFFVDYETVALGDRFGGFTMLRIPSEASKL 998
Query: 1063 IEEDPTGGKIKWEQGKLNGAPN-KMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMG 1121
+ED ++ + LNG + + + + FH+ DV ++ + Y V G
Sbjct: 999 ADEDHNAVHLRQLEPTLNGPAHFRFDHVASFHIEDVPVAIHMYN---------DYLVVCG 1049
Query: 1122 SLGAMLAF-------SSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGD 1174
LG + AF SRD +E + P L GRDH +R Y PVK+V+DGD
Sbjct: 1050 LLGTVSAFVPVVSPKQSRD----LKTIEKFVCASDPGLMGRDHGRFRGYYVPVKEVVDGD 1105
Query: 1175 LCEQFPTLSLDLQRK 1189
+ + L +D +R+
Sbjct: 1106 MLRE--VLVMDEKRR 1118
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3
SV=2
Length = 1288
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 211/707 (29%), Positives = 360/707 (50%), Gaps = 85/707 (12%)
Query: 26 KTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGR 85
K +I +A +EL E GR+ L + +FG I L+ G + ++V DSG+
Sbjct: 54 KQLQICMATQTQVELYDVE-EGRLRRLFTRTVFGTITGLSSVVADG--RSVLIVVGDSGK 110
Query: 86 IVIL--EYNPSKNVFDKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVL 143
+ +L +Y + + + E +SG RR+ P +++VDP+GR V++ A E+ K+ Y++
Sbjct: 111 MSVLRFKYEGGRVRLEALFNEPLSRSGVRRLSPQAHVSVDPQGRCVLLSAMERNKVCYLM 170
Query: 144 NRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEA 203
+ L +SSPLEA++ + + D FDNPIFA++E+D ++
Sbjct: 171 DV-KQGELQVSSPLEANRPNYVTMQTAACDVAFDNPIFASLEIDL------------ADG 217
Query: 204 QKNLTFYELDLGLNHVSRKWS-EPVDNGANMLVTVP-----------GGGD--GPSG--- 246
K L FY LDLGLNH+++ E D AN +++VP GG D P
Sbjct: 218 AKYLFFYMLDLGLNHMAKVADFELGDGSANFIMSVPDLEQYGINTKAGGPDDGDPDAIVP 277
Query: 247 -VLVCAENFVIYKN-QGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYG 304
VL+ +N+V K+ +G D+ IP R + +I + + K FF LLQ+ +G
Sbjct: 278 FVLMGFDNYVSLKDLRGRYDINVQIPTRK---LSQKTIITAGTVQKLKRDFFMLLQSNHG 334
Query: 305 DIFKVTLEHDNEHVSE-LKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGAD 363
D++KV + D + S + I YFDTIP ++ + K GY+FA SE+GN LYQF+ + D
Sbjct: 335 DLYKVKILPDEKTASPVVTISYFDTIPQAQNLHIFKHGYMFANSEYGNSYLYQFENL--D 392
Query: 364 PDVEASSSTLMETEEGFQPVFFQPRG-LKNLVRIEQVESLMPIMDMRIANLFEEEAPQIF 422
+ E+ +++M + +PR LKNL+ +++ + PI+ ++ E P
Sbjct: 393 DEEESMLTSVMPGRR----LIIEPRTVLKNLLVADKLALVNPILSSQLT----ERVPLTI 444
Query: 423 TLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLV 482
G +R+ G+ ++ S LP P +WTV N F + ++ +T++
Sbjct: 445 ATSTLG---DVRLFTAGVNFMDIISSPLPAAPLDIWTVATN-GSRFHKLLFIALQESTMI 500
Query: 483 LSIGE-TVEEVS---DSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRIN-----E 533
L I TVEE+ + + ++ ++ +G S++QV + + HI E+ + E
Sbjct: 501 LKIAAGTVEELELPHNPFVIAQDKTVLIAHMGGQSIIQVTENKMVHIIENRDESYESKLE 560
Query: 534 WRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVE-KHEMSGDVACLDIASV 592
W P I+K SN Q+++ALS E++YFE+ L E++ + E+ + L I +
Sbjct: 561 WFPPAGICILKASSNSTQLILALSNNEVVYFEIGSNESLNELQDRIEVEERITALAIGN- 619
Query: 593 PEGRKRSRFLAVGSYDNTIRILSL---DPDDCMQILSVQSVSSPPESLLFLEVQASVGGE 649
RS ++ + S D+T+++ SL D + ++++S+Q + SP SL AS GG
Sbjct: 620 ---GNRSDYMIIASVDSTVKVYSLKVQDQANFLEVVSMQVLVSPASSLQL----ASSGG- 671
Query: 650 DGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
SL L+ GL +GV R+ +D TG+L D R+++LG +P ++
Sbjct: 672 -------SLCLHIGLDSGVYVRSKLDRNTGELFDVRTKYLGTKPVEI 711
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 149/331 (45%), Gaps = 63/331 (19%)
Query: 937 LHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTI---VSINTY 993
LH T A+C F +LL + + LY LGKK+LL+K + L P +I V+++ +
Sbjct: 959 LHDTVAGSTIHAMCPFHDKLLVPLANAVVLYGLGKKQLLKKSISYL-PTSITKIVALDQW 1017
Query: 994 R-DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYF 1052
R+ VGDI ES + +NQ ADD R +T +D T+ G D+FGNI+
Sbjct: 1018 NGTRVAVGDIHESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDECTVIGGDRFGNIWL 1077
Query: 1053 VRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIV-------QFHVGDVVTSLQK-A 1104
+RLP + I+E G + G P+ + E V F++ D+ S A
Sbjct: 1078 LRLPLEYDRLIKE----GVDSYLLTLNTGIPSNIRECVFKWQLLNHFYINDIPMSFHLIA 1133
Query: 1105 SLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMR---------QEHP----- 1150
S S++Y + G++G ++ +R +++FF LE MR QE+
Sbjct: 1134 SPQMADRASILYAGLQGTIGYLIPLITRREIEFFDLLEQAMRDADHLFYLDQENRLNDTS 1193
Query: 1151 -------------------------------PLCGRDHMAYRSAYFPVKDVIDGDLCEQF 1179
L GRD M YRS Y PV+ V DGDLCEQF
Sbjct: 1194 ELNDGADEEGSVIDRRFPSVQKKRKIPEGAYSLVGRDAMMYRSYYNPVRHVTDGDLCEQF 1253
Query: 1180 PTLSLDLQRKIADELD-RTPGEILKKLEEIR 1209
L + +A +D R+ EI +++ ++R
Sbjct: 1254 LELYPSEKNFLAARVDNRSVQEIERRINDMR 1284
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 292/1244 (23%), Positives = 524/1244 (42%), Gaps = 204/1244 (16%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y +T +PT + + GNF+ + ++VA+ +E LL P+ ++ ++ I+G I
Sbjct: 6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQG---LQPMLDVPIYGRI 62
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNP-SKNVFDKIHQETFGKSGCRRIVPGQYL 120
+L FR G +D++ + ++ + +L+++P S + + + + G R GQ
Sbjct: 63 ATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG-RPTDNGQIG 121
Query: 121 AVDPKGRAVMIGACEKQKLVYVLNRDTAARL--TISSPLEAHKSHTIVYSICGIDCGFDN 178
+DP R +IG L V+ D +L + LE + I + G
Sbjct: 122 IIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLF-----GCAK 174
Query: 179 PIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDL-GLNHVSRKWSE-PVDNGANMLVT 236
P A + D +A +++ YE+ L + V WS+ +DNGA++L+
Sbjct: 175 PTIAVLYQDNKDA-------------RHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIP 221
Query: 237 VPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFF 296
VP GVL+ E ++Y + IP R + G + V +
Sbjct: 222 VP---PPLCGVLIIGEETIVYCS---ASAFKAIPIRPSITKAYGRVDVDGSR-------- 267
Query: 297 FLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQ 356
+LL G I + + H+ E V+ LKI+ + +++ L + +F S +G+ L +
Sbjct: 268 YLLGDHAGMIHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAVVFVGSSYGDSQLVK 327
Query: 357 FQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEE 416
+ PD + S ++E + +L PI+D + +L +
Sbjct: 328 ---LNLHPDAKGSYVEVLE----------------------RYINLGPIVDFCVVDLERQ 362
Query: 417 EAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSF 476
Q+ T G SLR++R G+ ++E A +L G+ +W++K ++++ FD ++VVSF
Sbjct: 363 GQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGI-KGMWSLKSSIDEAFDTFLVVSF 421
Query: 477 NNAT--LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR--IN 532
+ T L +++ + +EE GFL +L + L+QV + +R + R +
Sbjct: 422 ISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELRD 481
Query: 533 EWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASV 592
EW P T+ +N QV++A GG L+Y E+ G+L EV+ + +V+CLDI +
Sbjct: 482 EWHAPAGFTVNVATANASQVLLATGGGHLVYLEIG-DGKLTEVQHALLEYEVSCLDINPI 540
Query: 593 PEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDG 651
+ S+ AVG + D ++RI SL PE L L + +GGE
Sbjct: 541 GDNPNYSQLAAVGMWTDISVRIFSL-----------------PE--LTLITKEQLGGE-- 579
Query: 652 ADHPASLFLNA---------GLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG 702
P S+ L A L +G L +D TGQL D + LG +P L +
Sbjct: 580 -IIPRSVLLCAFEGISYLLCALGDGHLLNFQMDTTTGQLKDRKKVSLGTQPITLRTFSSK 638
Query: 703 GRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTI 762
+ S RP + Y + L + ++ + + + F+S + + L + TI
Sbjct: 639 SATHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTI 698
Query: 763 ERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGE 822
+ + + + +PL RR Q + + F +G
Sbjct: 699 DDI-QKLHIRTIPLGEHARRICHQEQTR-----------------------TFGICSLGN 734
Query: 823 NGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNE 882
N +M +R+LD ++ L E
Sbjct: 735 QSNSEESEMH----------------------------FVRLLDDQTFEFMSTYPLDSFE 766
Query: 883 AAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRN-IVAGYIHIYRFVEEGKSLELLHKTQ 941
SI + +F + ++ VGTA L P+ N G I ++ VE+G+ L+L+ + +
Sbjct: 767 YGCSILSCSFTEDKN-VYYCVGTAYVL---PEENEPTKGRILVF-IVEDGR-LQLIAEKE 820
Query: 942 VEGIPLALCQFQGRLLAGIGPVLRLY-----DLGKKRLLRKCENKLFPNTIVSINTYRDR 996
+G +L F G+LLA I ++LY D G + L +C + + + T D
Sbjct: 821 TKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALY-VQTRGDF 879
Query: 997 IYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLP 1056
I VGD+ +S Y+ +E + A D W++A +D D GA+ N+ V+
Sbjct: 880 IVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVK-- 937
Query: 1057 QDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVP-------G 1109
K +G + ++E + ++H+G+ V + SLV G
Sbjct: 938 ----------------KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIG 981
Query: 1110 GGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS-----AY 1164
+VI+GTV G +G ++A ++ F L+ +R+ + G H +RS
Sbjct: 982 QIPTVIFGTVNGVIG-VIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRT 1040
Query: 1165 FPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
++ +DGDL E F LS + I+ ++ E+ K++EE+
Sbjct: 1041 AEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEEL 1084
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 212/847 (25%), Positives = 401/847 (47%), Gaps = 130/847 (15%)
Query: 1 MYLYSLTLQQPTGIIAAINGNF----SGTK--TPEIVVARGKVLELLRPENSGRIETLVS 54
+YLY LTL++ T + + G+F +G+K ++ VA LEL + G ++ +
Sbjct: 58 LYLYHLTLKKQTNFVHSCIGHFVDLEAGSKREQSQLCVATETHLELYDTAD-GELKLIAK 116
Query: 55 TE-IFGAIRSLAQFRL--TGSQKD------YIVVGSDSGRIVILE--YNPSKNVFDKIHQ 103
+ +F I S+ L +GS+ ++ + SDSG + I++ + +
Sbjct: 117 FQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQIIMHAGALRLKTLVN 176
Query: 104 ETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSH 163
+ ++ RR+ P Y+ +DP GR +++ + E+ KL +++ D A +L ISSPLE + H
Sbjct: 177 QPLTRTTLRRVSPISYMEIDPNGRCIILSSVEQNKLCFLV--DYAQKLRISSPLEIIRPH 234
Query: 164 TIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKW 223
+ + +D F+NP F +E+D AA++ +L FY L+LGLNH+ +K
Sbjct: 235 MVTLDMAVVDVNFNNPCFVTLEID----------NAATQLSVHLIFYVLELGLNHIVKKA 284
Query: 224 SEPVDNGANMLVTVP-------------GGGDGPSG------VLVCAENFVIYKN-QGHP 263
V+ AN ++++P D V++ EN ++ K+ G
Sbjct: 285 DYLVNPSANFVLSLPDLSRYNITTSLSDNNYDADYDTLFNPFVVIGFENHILVKDMNGFF 344
Query: 264 DVRAVIPRRADLPA-ERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSE-- 320
++ IP+R+ + + V I+S + K FF LLQ+ +GD+FK+T+ D +
Sbjct: 345 SLKVEIPKRSITNSRHKNVTIISGIVQKLKNDFFVLLQSNHGDLFKLTVSPDTNDRNRPL 404
Query: 321 LKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGF 380
+++ YFDTI + + + K+GYLFA SE N+ L+QF+ +G + + S ++ +++
Sbjct: 405 VQLSYFDTIQNSHQLHIFKNGYLFALSEMNNNFLFQFEKLGVEKN---DFSNVLTSKDPN 461
Query: 381 QPVFFQPR-GLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPG 439
+ + F+P L+NL + Q +L P + +I + ++P + + + L
Sbjct: 462 KSLVFEPSIKLQNLSILSQQLNLNPSIKSQIVS----DSP-LSIATKHFTNNKIITLTNA 516
Query: 440 LAVSEMAVSQLPGVPSAVWTV-KKNVNDEFDAYIVVSFNNATLVLSI-GETVEEV----- 492
+ S + + LP + +W + + + + ++F T++L I E++EE+
Sbjct: 517 VNYSNLISTSLPPNATKLWLIPDPATTGDNNTLLFITFPKKTMILQIDNESMEELTPDEA 576
Query: 493 SDSGF-LDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRIN-----EWRTPGKRTIVKVG 546
+ S F L ++ L+G S++QV + +RHI G+ W P IV
Sbjct: 577 TRSAFKLSQDTTIHTCLMGSHSIIQVCTAELRHIVPTGKSRYSNKLTWVPPAGIRIVCAT 636
Query: 547 SNRLQVVIALSGGELIYFEVDMTG-QLLEVEKH----EMSGDVACLDIASVPEGRKRSRF 601
S++ Q++I+LS EL+YF++D++ L+E+ H M VA + + + +
Sbjct: 637 SSKTQLIISLSNYELVYFKIDVSSDSLIELTTHPELDTMPSKVA------IVQDTQHADL 690
Query: 602 LAVGSYDNTIRILSL--DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLF 659
LA+ + I+I+SL +D + ++S+Q VS ++ + +S+G L
Sbjct: 691 LAIADNEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVR-DSSIG---------QLN 740
Query: 660 LNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL-----FSVVVGGR---------- 704
L+ GL+NGV + + V G +D + RFLGL+P L SV +
Sbjct: 741 LHVGLENGVYMKFHIGDVDGSFTDIKRRFLGLKPVSLSYLREISVSLNNEEEEEEEEDDD 800
Query: 705 ----------------AAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASF-SSDQCVE 747
+ ++C SS W+ Y + + + L + + + F ++D +
Sbjct: 801 DEKEEEEINSSGAKWMSCVVCHSSSTWVSYTWKNVWTIRQLKDQNMLSCSKFVNADVAIN 860
Query: 748 GVVSVAG 754
GV S++
Sbjct: 861 GVCSISS 867
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 155/342 (45%), Gaps = 69/342 (20%)
Query: 934 LELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRK--CENKLFPNTIVSIN 991
+ELLH+T++ A+ +F+ LL +G + LY LGKK+LLR+ + + IVS++
Sbjct: 1019 IELLHQTEIISPIHAMLKFKNFLLTAMGSTIVLYGLGKKQLLRRSVTQTPVSITKIVSMH 1078
Query: 992 TYR-DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNI 1050
+ +R+ VGDI ES + N + DDSV R +T +D T+ GAD++GN
Sbjct: 1079 QWNYERLAVGDIHESVTLFIWDPAGNVFIPYVDDSVKRHVTVLKFLDEATVIGADRYGNA 1138
Query: 1051 YFVRLPQD----VSDEIEEDPTGGKIKWE------QGKLNGAPN------KMEEIVQFHV 1094
+ +R P + +S+ + + G IK+ Q KL PN K + + F V
Sbjct: 1139 WTLRSPPECEKIMSNHDPSELSNGAIKYPLDVITLQQKL---PNTYDCKFKFQLLNHFFV 1195
Query: 1095 GDVVTSLQKA-SLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLE----------- 1142
D++T SL IY + G++G + S+ +V ++E
Sbjct: 1196 NDIITDFHILDSLSNSDRPGCIYMGLQGTVGCFIPLLSKGNVFMMGNIENIMAEADDTFY 1255
Query: 1143 ---------MHMRQEHP-------------------------PLCGRDHMAYRSAYFPVK 1168
+MR+E + GRDH YRS Y PV+
Sbjct: 1256 LDYESRKKNNNMRKEDDEEESGSVVLQGRHGIEDEIICEGSCSILGRDHQEYRSYYAPVR 1315
Query: 1169 DVIDGDLCEQFPTLSLDLQRKIADELDRTPGE-ILKKLEEIR 1209
VIDGDLCE F LSL+ Q +A L E I++ + E+R
Sbjct: 1316 KVIDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEVR 1357
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 301/1249 (24%), Positives = 523/1249 (41%), Gaps = 192/1249 (15%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIFGAI 61
Y +T Q+PT ++A + GNF+ +++AR +E L+ PE + L I G I
Sbjct: 5 YVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEG---LRPLKEININGTI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVP--GQY 119
+ FR S KD + + + ++ILE +V + + S I G
Sbjct: 62 AVMRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITVVTKANGNVSDSVGIPSEGGVI 121
Query: 120 LAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNP 179
A+DPK R +IG C Q L ++ D A ++ L + + VY + + G NP
Sbjct: 122 AAIDPKAR--VIGMCLYQGLFTIIPMDKDASELKATNLRMDELN--VYDVEFLH-GCLNP 176
Query: 180 IFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEP-VDNGANMLVTVP 238
I +DS G+ + NL E + W + V+ A ML+ VP
Sbjct: 177 TVIVIH-------KDSDGRHVKSHEINLRDKEF------MKIAWKQDNVETEATMLIPVP 223
Query: 239 GGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTL---- 294
GV+V ++Y + + AV P T RQ T+
Sbjct: 224 S---PIGGVIVIGRESIVYHDGS--NYHAVAP----------------LTFRQSTINCYA 262
Query: 295 ------FFFLLQTEYGDIFKVTL----EHDNEHVSELKIKYFDTIPVTASMCVLKSGYLF 344
+LL G ++ + L V ++K++ I + + L +G+L+
Sbjct: 263 RVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIKVEQLGEISIPECITYLDNGFLY 322
Query: 345 AASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMP 404
+ G+ L + + D +V +E +L P
Sbjct: 323 IGARHGDSQLVRLNSEAIDGSY--------------------------VVPVENFTNLAP 356
Query: 405 IMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNV 464
I+D+ + +L + QI T G SLRI+R G+ + E A LPG+ +W++K V
Sbjct: 357 ILDIAVVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACIDLPGI-KGMWSLKVGV 415
Query: 465 NDE-FDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGI 522
++ ++ +V++F T +L++ GE VEE GF + S + D L+QV +
Sbjct: 416 DESPYENTLVLAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSV 475
Query: 523 RHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEM 580
R + + + EWR G RTI V N Q+++A S ++ Y ++ G L E + +
Sbjct: 476 RLVSSATKALVAEWRPTGDRTIGVVSCNTTQILVA-SACDIFYIVIE-DGSLREQSRRTL 533
Query: 581 SGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PESL 637
+ +VACLDI + E +K+S +AVG + D + ILSL PD ++ + + +S P S+
Sbjct: 534 AYEVACLDITPLDETQKKSDLVAVGLWTDISAVILSL-PD--LETIYTEKLSGEIIPRSI 590
Query: 638 LFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLF 697
L + H +L L +G ++ ++D TGQL+D + LG +P L
Sbjct: 591 LMTTFEGI--------H----YLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLR 638
Query: 698 SVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNAL 757
+ + S RP + Y + + + ++ + + + S ++ + + NA+
Sbjct: 639 TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAV 698
Query: 758 RVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEA 817
+ TI+ + + T +PL PRR Q + + + R AK A
Sbjct: 699 ILGTIDEIQKLHIRT-VPLGEGPRRIAYQESSQTFAV---STLRIDVHGRGGAKPLRNSA 754
Query: 818 AGMGEN-------------GNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRV 864
+ +N GN E G + + ++ L +Q + + ++V+
Sbjct: 755 STQAQNITCSSNFLPKPGGGNSTAANAEVGQEIDVHNLLVIDQNTFEVLHAHQFVA---- 810
Query: 865 LDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHI 924
P + ++ +L D+ + + V T+ + P+ + G I I
Sbjct: 811 --PETISSLMSAKLGDDPNTYYV---------------VATSLVIPEEPEPKV--GRIII 851
Query: 925 YRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFP 984
+ + E L + +T+V+G AL +F G++LAGIG +RLY+ ++ LR N
Sbjct: 852 FHYHE--NKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKELRMECN--IQ 907
Query: 985 NTIVS--INTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMA 1042
N I + + D I VGD+ S ++++ E A D P+W+ A +D DT
Sbjct: 908 NMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDCEPKWMRAVEILDDDTFL 967
Query: 1043 GADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQ 1102
G++ GN++ + +D + +E+ + E+ +FH+GD V +
Sbjct: 968 GSETNGNLFVCQ--KDSAATTDEE----------------RQLLPELARFHLGDTVNVFR 1009
Query: 1103 KASLV---------PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLC 1153
SLV P G V+YGT G++G + +D DF LE +++ +
Sbjct: 1010 HGSLVMQNVGERTTPING-CVLYGTCNGAIGIVTQI-PQDFYDFLHGLEERLKKIIKSVG 1067
Query: 1154 GRDHMAYR-----SAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRT 1197
+H YR S P + IDGDL E F LS D R L+ T
Sbjct: 1068 KIEHTYYRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELT 1116
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 282/1239 (22%), Positives = 525/1239 (42%), Gaps = 186/1239 (15%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIF 58
++ Y +T +PT + + GNF+G + +++A+ +E LL P+ ++ ++ I+
Sbjct: 3 VWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQG---LQPMLDVPIY 59
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNP-SKNVFDKIHQETFGKSGCRRIVPG 117
G I +L FR G +D + + ++ + +L+++ + V + + + G R G
Sbjct: 60 GRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIG-RPTDNG 118
Query: 118 QYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFD 177
Q +DP R +IG L V+ D +L + + + + G
Sbjct: 119 QIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCP 173
Query: 178 NPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDL-GLNHVSRKWSEP-VDNGANMLV 235
P + D +A +++ YE+ L + + W++ +DNGA++L+
Sbjct: 174 KPTIVVLYQDNKDA-------------RHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLI 220
Query: 236 TVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLF 295
VP GVL+ E ++Y + IP R + G V A R
Sbjct: 221 PVP---PPLCGVLIIGEETIVYCS---ASAFKAIPIRPSITRAYGR--VDADGSR----- 267
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
+LL G + + + H+ E V+ LKI+ + +++ L + ++F S +G+ L
Sbjct: 268 -YLLGDHNGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQLV 326
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
+ + PD + S ++E + +L PI+D + +L
Sbjct: 327 K---LNLQPDTKGSYVEVLE----------------------RYVNLGPIVDFCVVDLER 361
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
+ Q+ T G SLRI+R G+ ++E A +L G+ +W+++ +D +D ++VVS
Sbjct: 362 QGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSATDDPYDTFLVVS 420
Query: 476 FNNATLVLSIG--ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR--I 531
F + T VL++ + +EE GF +L + L+QV + +R + R
Sbjct: 421 FISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDLK 480
Query: 532 NEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIAS 591
NEW P ++ +N QV++A GG L+Y E+ G L EV+ ++ D++CLDI
Sbjct: 481 NEWFAPVGYSVNVATANATQVLLATGGGHLVYLEIG-DGVLNEVKYAKLDYDISCLDINP 539
Query: 592 VPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PESLLFLEVQASVGG 648
+ E S AVG + D ++RI SL PD + +++ + + P S+L +
Sbjct: 540 IGENPNYSNIAAVGMWTDISVRIYSL-PD--LNLITKEQLGGEIIPRSVLMCSFEGIS-- 594
Query: 649 EDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
+L L +G L V+ M TG+L+D + LG +P L + +
Sbjct: 595 ----------YLLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVF 644
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
S RP + Y + L + ++ + + + F+ + + L + TI+ + +
Sbjct: 645 AASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEI-QK 703
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNM 828
+ ++PL RR Q + + + A++ E
Sbjct: 704 LHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPE-------------------- 743
Query: 829 DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSIC 888
+ +R+LD ++ L E SI
Sbjct: 744 ------------------------------MHFVRLLDDQTFEFISTYPLDQFEYGCSIL 773
Query: 889 TVNFHDKEHGTLLAVGTAKGLQFWPKRN-IVAGYIHIYRFVEEGKSLELLHKTQVEGIPL 947
+ +F D + +GTA + P+ N G I ++ VE+GK L+L+ + + +G
Sbjct: 774 SCSFSD-DSNVYYCIGTAYVM---PEENEPTKGRILVF-IVEDGK-LQLIAEKETKGAVY 827
Query: 948 ALCQFQGRLLAGIGPVLRLY------DLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGD 1001
+L F G+LLA I ++LY D G + L +C + + + T D I VGD
Sbjct: 828 SLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALY-VQTRGDFIVVGD 886
Query: 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSD 1061
+ +S ++ +E + A D W++A +D D GA+ N++ VR
Sbjct: 887 LMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR------- 939
Query: 1062 EIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV-------PGGGESV 1114
K +G + +++E + ++H+G+ V + SLV G +V
Sbjct: 940 -----------KNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTV 988
Query: 1115 IYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAY-----FPVKD 1169
I+GTV G +G ++A D F L+ ++R+ + G H +RS Y K+
Sbjct: 989 IFGTVNGVIG-VIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKN 1047
Query: 1170 VIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
+DGDL E F LS + +I+ + E++K++EE+
Sbjct: 1048 FLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEEL 1086
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 283/1241 (22%), Positives = 525/1241 (42%), Gaps = 185/1241 (14%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRI--ETLVSTE 56
++ Y +T +PT + + GNF+G + +++A+ +E LL P+ I + ++
Sbjct: 3 VWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLDVP 62
Query: 57 IFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNP-SKNVFDKIHQETFGKSGCRRIV 115
I+G I +L FR G +D + + ++ + +L+++ + V + + + G R
Sbjct: 63 IYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIG-RPTD 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
GQ +DP R +IG L V+ D +L + + + + G
Sbjct: 122 NGQIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YG 176
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDL-GLNHVSRKWSEP-VDNGANM 233
P + D +A +++ YE+ L + + W++ +DNGA++
Sbjct: 177 CPKPTIVVLYQDNKDA-------------RHVKTYEVSLKDKDFIEGPWAQNNLDNGASL 223
Query: 234 LVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKT 293
L+ VP GVL+ E ++Y + IP R + G V A R
Sbjct: 224 LIPVP---PPLCGVLIIGEETIVYCS---ASAFKAIPIRPSITRAYGR--VDADGSR--- 272
Query: 294 LFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHA 353
+LL G + + + H+ E V+ LKI+ + +++ L + ++F S +G+
Sbjct: 273 ---YLLGDHNGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQ 329
Query: 354 LYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANL 413
L + + PD + S ++E + +L PI+D + +L
Sbjct: 330 LVK---LNLQPDTKGSYVEVLE----------------------RYVNLGPIVDFCVVDL 364
Query: 414 FEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIV 473
+ Q+ T G SLRI+R G+ ++E A +L G+ +W+++ +D +D ++V
Sbjct: 365 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLRSATDDPYDTFLV 423
Query: 474 VSFNNATLVLSIG--ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR- 530
VSF + T VL++ + +EE GF +L + L+QV + +R + R
Sbjct: 424 VSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRD 483
Query: 531 -INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDI 589
NEW P ++ +N QV++A GG L+Y E+ G L EV+ ++ D++CLDI
Sbjct: 484 LKNEWFAPVGYSVNVATANATQVLLATGGGHLVYLEIG-DGVLNEVKYAKLDYDISCLDI 542
Query: 590 ASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PESLLFLEVQASV 646
+ E S AVG + D ++RI SL PD + +++ + + P S+L +
Sbjct: 543 NPIGENPNYSNIAAVGMWTDISVRIYSL-PD--LNLITKEQLGGEIIPRSVLMCSFEGIS 599
Query: 647 GGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAA 706
+L L +G L V+ M TG+L+D + LG +P L +
Sbjct: 600 ------------YLLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTH 647
Query: 707 MLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLG 766
+ S RP + Y + L + ++ + + + F+ + + L + TI+ +
Sbjct: 648 VFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEI- 706
Query: 767 ETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNG 826
+ + ++PL RR Q + + + A++ E
Sbjct: 707 QKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPE------------------ 748
Query: 827 NMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFS 886
+ +R+LD ++ L E S
Sbjct: 749 --------------------------------MHFVRLLDDQTFEFISTYPLDQFEYGCS 776
Query: 887 ICTVNFHDKEHGTLLAVGTAKGLQFWPKRN-IVAGYIHIYRFVEEGKSLELLHKTQVEGI 945
I + +F D + +GTA + P+ N G I ++ VE+GK L+L+ + + +G
Sbjct: 777 ILSCSFSD-DSNVYYCIGTAYVM---PEENEPTKGRILVF-IVEDGK-LQLIAEKETKGA 830
Query: 946 PLALCQFQGRLLAGIGPVLRLY------DLGKKRLLRKCENKLFPNTIVSINTYRDRIYV 999
+L F G+LLA I ++LY D G + L +C + + + T D I V
Sbjct: 831 VYSLNAFNGKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALY-VQTRGDFIVV 889
Query: 1000 GDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDV 1059
GD+ +S ++ +E + A D W++A +D D GA+ N++ VR
Sbjct: 890 GDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVR----- 944
Query: 1060 SDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV-------PGGGE 1112
K +G + +++E + ++H+G+ V + SLV G
Sbjct: 945 -------------KNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIP 991
Query: 1113 SVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAY-----FPV 1167
+VI+GTV G +G ++A D F L+ ++R+ + G H +RS Y
Sbjct: 992 TVIFGTVNGVIG-VIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDA 1050
Query: 1168 KDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
K+ +DGDL E F LS + +I+ + E++K++EE+
Sbjct: 1051 KNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEEL 1091
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 283/1241 (22%), Positives = 512/1241 (41%), Gaps = 192/1241 (15%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLE--LLRPENSGRIETLVSTEIF 58
++ Y++T Q+PT + + GNF+ + ++VA+ +E LL P+ ++T++ ++
Sbjct: 3 VWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQG---LQTILDVPLY 59
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYN-PSKNVFDKIHQETFGKSGCRRIVPG 117
G I ++ FR G +D++ V ++ + +L+++ S + + + + G R G
Sbjct: 60 GRIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIG-RPTDNG 118
Query: 118 QYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFD 177
Q +DP R +IG L V+ D +L + + + + G
Sbjct: 119 QIGIIDPDCR--VIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCT 173
Query: 178 NPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDL-GLNHVSRKWSEP-VDNGANMLV 235
P A + D +A +++ YE+ L N V WS+ +DNGA++L+
Sbjct: 174 KPTIAVLYQDNKDA-------------RHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLI 220
Query: 236 TVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLF 295
VP GVL+ E ++Y + + IP R + G + + +
Sbjct: 221 PVPSP---LCGVLIIGEETIVYCS---ANAFKAIPIRPSITKAYGRVDLDGSR------- 267
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
+LL G I + + H+ E V+ LKI+ + +S+ L + +F S +G+ L
Sbjct: 268 -YLLGDHAGLIHLLVITHEKEKVTGLKIELLGETSIASSISYLDNAVVFVGSSYGDSQLI 326
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
+ + PD + S ++E + +L PI+D + +L
Sbjct: 327 K---LNLQPDAKGSYVEILE----------------------KYVNLGPIVDFCVVDLER 361
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
+ Q+ T G SLRI+R G+ ++E A +L G+ +W++K ++++ FD ++VVS
Sbjct: 362 QGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI-KGMWSLKSSIDEAFDTFLVVS 420
Query: 476 FNNAT--LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGR--I 531
F + T L ++I + +EE GFL +L + L+QV + +R + R
Sbjct: 421 FISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR 480
Query: 532 NEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIAS 591
N+W P ++ +N QV++A GG L+Y E+ G L EV+ + +V+CLDI
Sbjct: 481 NKWDAPAGFSVNVATANASQVLLATGGGHLVYLEIG-DGTLTEVKHVLLEYEVSCLDINP 539
Query: 592 VPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PESLLFLEVQASVGG 648
+ + S+ AVG + D ++RI L PD + +++ + + P S+L +
Sbjct: 540 IGDNPNYSQLAAVGMWTDISVRIFVL-PD--LTLITKEELGGEIIPRSVLLCAFEGIS-- 594
Query: 649 EDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708
+L L +G L +D G+L D + LG RP L + +
Sbjct: 595 ----------YLLCALGDGHLLNFQLDTSCGKLRDRKKVSLGTRPITLRTFSSKSATHVF 644
Query: 709 CLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGET 768
S RP + Y + + L + ++ + + + F+S + + L + TI+ + +
Sbjct: 645 AASDRPAVIYSNNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDI-QK 703
Query: 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNM 828
+ +P+ RR Q + + I + +AEE E+ +A + +
Sbjct: 704 LHIRTIPIGEHARRICHQEQTRTFA-ISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPL 762
Query: 829 DQMENG---------DDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQ 879
D E G DD+N Y + Y P+ E++ I V + E +
Sbjct: 763 DAFECGCSILSCSFTDDKNVYYCVG-TAYVLPE-ENEPTKGRILVFIVEEGRLQLITEKE 820
Query: 880 DNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939
A +S+ N G LLA K I +Y+++ L
Sbjct: 821 TKGAVYSLNAFN------GKLLASINQK--------------IQLYKWMLRDDGTRELQS 860
Query: 940 TQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYV 999
C G +LA LY + T D I V
Sbjct: 861 E---------CGHHGHILA-------LY----------------------VQTRGDFIAV 882
Query: 1000 GDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDV 1059
GD+ +S Y+ +E + A D W+TA ++ D G D NI+ V+
Sbjct: 883 GDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVK----- 937
Query: 1060 SDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVP-------GGGE 1112
K +G + +ME + ++H+G+ V + SLV G
Sbjct: 938 -------------KNNEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLPDSDIGQIP 984
Query: 1113 SVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS-----AYFPV 1167
+VI+GTV G +G ++A ++ F L+ +R+ + G H +RS
Sbjct: 985 TVIFGTVSGMIG-VIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043
Query: 1168 KDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
K +DGDL E F LS +I+ +D E+ K++EE+
Sbjct: 1044 KGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEEL 1084
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 277/1247 (22%), Positives = 510/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + N
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPN 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAKKEC 814
TI+ + + + +PL +PR+ Q + ++ + D T R +A +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 815 FEAAGMGENGNGNM---DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
++ + + G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ +G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ + + +V+G + +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQTVAEKEVKGAVYPMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 277/1247 (22%), Positives = 510/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + N
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPN 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAKKEC 814
TI+ + + + +PL +PR+ Q + ++ + D T R +A +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 815 FEAAGMGENGNGNM---DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
++ + + G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ +G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 197/710 (27%), Positives = 327/710 (46%), Gaps = 91/710 (12%)
Query: 26 KTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGR 85
K ++ +A +EL N G ++ L I I S+ + + +V+ +DSG
Sbjct: 55 KELQLCLATQDCVELYDVSN-GTLDALGKWPIAATILSMTKLNMDRCSHTILVLITDSGN 113
Query: 86 IVILEY---NPSKNVFDK-IHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVY 141
+ ++ + S V+ + + E +SG RR VP + DP+ R V E+ K+
Sbjct: 114 LTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQMVSDPQSRCVFFSGIERSKMC- 172
Query: 142 VLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAAS 201
VL +L + SP+E +S I + D FDNP+ AAIE++ D
Sbjct: 173 VLADWQRGKLVVGSPIEIQRSDRITLASAACDVSFDNPVNAAIEVESGTNDY-------- 224
Query: 202 EAQKNLTFYELDLGLNHVS-RKWSEPVDNGANMLVTVPG--------------GGDGPSG 246
L+FY +DLGLN + RK D N ++ P D +
Sbjct: 225 ----YLSFYTMDLGLNTLLLRKEHLLEDKSINFVMQCPNLQQYKIKTRPNDETDQDSVNP 280
Query: 247 VLVCAEN--FVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYG 304
++C + + +G +V +P R + + I++ H+ K FF L+Q+ +G
Sbjct: 281 FVICGYDGYLTLIDLEGFYEVSVQLPVRKTVSSTN---IINGTIHKLKKDFFILMQSNHG 337
Query: 305 DIFKVTLEHDNEHVSE-LKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGAD 363
D++KV + D E + L+I YFDT+P + + + KSG LF SEFG L QF+++G D
Sbjct: 338 DMYKVGIIPDEETKAPVLEIAYFDTLPTSEDIHIFKSGALFNVSEFGTSYLTQFESLGED 397
Query: 364 PDVEASSS----TLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAP 419
+ S + + +ETE LKNL ++ + SL P+ +N +
Sbjct: 398 LEKITSYTPGRRSFIETES----------TLKNLSILDSLTSLNPLTSFHASN-----ST 442
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNA 479
+ L +L L + E+ + LP +PS +WTV+ N E + I +S +
Sbjct: 443 PLTILAAANQTENLVKLTSAVDFEELISTTLPRIPSKLWTVRIPKN-ETHSLIFLSMETS 501
Query: 480 TLVLSIGE-TVEEV-SDSG-FLDTTPSLAVSLIGDDSLMQVHPSGIRHIRE--DGRIN-- 532
T +L I E TVE+ DS F+ PSL V + S++QV + I E DG
Sbjct: 502 TTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQRSIIQVTRDCLLQIIEMHDGPYTKK 561
Query: 533 -EWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEV--DMTGQLLE-VEKHEMSGDVACLD 588
EW P IV N Q+V+AL+ E+ YFE+ D +L + VE +A L
Sbjct: 562 LEWYPPAGVGIVTAFCNETQLVVALTNHEICYFEIIEDSLNELQDRVEMDSTVNSIALL- 620
Query: 589 IASVPEGRKRSRFLAVGSYDNTIRILSLDPD--DCMQILSVQSVSSPPESLLFLEVQASV 646
++S + +G D++++IL+L D I ++QS+ S P SLLF+
Sbjct: 621 ------AGQKSGYCVLGCEDSSLQILNLQSKHPDFFTICAIQSLISKPHSLLFM------ 668
Query: 647 GGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
D +D L ++ G+++GV + +++ G + D R+RF+G +P ++
Sbjct: 669 --RDTSD----LKIHVGMKSGVYLSSKLNINDGTVFDVRTRFVGTKPVQV 712
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/404 (21%), Positives = 159/404 (39%), Gaps = 84/404 (20%)
Query: 863 RVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGL--QFWPKRNIVAG 920
++L + NT ++ E ++C+ NF +++ + K + Q K N++
Sbjct: 897 KLLATNNGNTVVIIA---KEVFNAVCSCNFGTNVKYIVISTESGKFIVIQIRVKNNVLET 953
Query: 921 YIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCEN 980
+ +H+T V A+ F +L I + L+ LGKK+LLRK
Sbjct: 954 --------------QYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLLRKSIT 999
Query: 981 KLFP--NTIVSINTYR-DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHID 1037
++ P + +++ + + VGDI+ES KY D N ADD V R +T ID
Sbjct: 1000 EMPPYITQVTALDQWDGTMLAVGDIRESVTIFKYDIDNNSFIGVADDIVKRHVTTVKFID 1059
Query: 1038 FDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWE---QGKLNGAPNKMEEIVQFHV 1094
++ G D+FGN + +R+ + + + + E +N P K E + ++
Sbjct: 1060 VSSVIGGDRFGNCWVLRVNYESDTRVASNIKACQYTLETLCHMYMNDTPMKFEIVNHMNM 1119
Query: 1095 GDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLE--------MHMR 1146
D ++++ + G++G + +R + + + +H +
Sbjct: 1120 SD--------------RPAILWIGLQGTIGCFVPLITRKEQQLYQSFQSTYAELDVLHFQ 1165
Query: 1147 QEHPP---------------------------------LCGRDHMAYRSAYFPVKDVIDG 1173
+ P GRD ++YRS+Y P K++IDG
Sbjct: 1166 DNNKPEEVDLEETEGALDEAYHTTKNTDHQDYVEGVISRVGRDFLSYRSSYAPSKNIIDG 1225
Query: 1174 DLCEQFPTLSLDLQRKIADELDRTPGEIL----KKLEEIRNKIV 1213
+ EQ T QR IA ++ L K + E+R V
Sbjct: 1226 ETLEQLTTYLPSDQRWIASKMKHADSGKLDIFNKYINEMRTNYV 1269
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 41 LRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDK 100
L N+G +++ E+F A+ S F G+ YIV+ ++SG+ ++++ NV +
Sbjct: 898 LLATNNGNTVVIIAKEVFNAVCS-CNF---GTNVKYIVISTESGKFIVIQIRVKNNVLET 953
Query: 101 --IHQETFGKSGCRRIVP-GQYLAVDPKGRAVMIGACEKQKL 139
IH ET S +V G LA G V+ G +KQ L
Sbjct: 954 QYIH-ETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLL 994
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 276/1247 (22%), Positives = 509/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + +F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + N
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPN 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAKKEC 814
TI+ + + + +PL +PR+ Q + ++ + D T R +A +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 815 FEAAGMGENGNGNM---DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
++ + + G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ +G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 277/1247 (22%), Positives = 510/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ +
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPG 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVI------IETDQGALTAEEREAAKKE 813
TI+ + + + +PL +PR+ Q + + ++ G TA A+ +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGGTTALRPSASTQA 760
Query: 814 CFEAAGMGENGNGNMDQMEN--GDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
+ + + + E G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ +G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GEASTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 277/1249 (22%), Positives = 518/1249 (41%), Gaps = 175/1249 (14%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLEL--LRPENSGRIETLVSTEIFG 59
Y Y +T Q+PT + A + G+F+ +++A+ LE+ + PE + + ++G
Sbjct: 3 YNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEG---LRPVKEVGMYG 59
Query: 60 AIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRR 113
I + FR G KD + + + ILEY S + D I Q+ G+
Sbjct: 60 KIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETG 119
Query: 114 IVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGID 173
I+ +DP R + + + V L RD + LE + H I D
Sbjct: 120 IIG----IIDPDCRMIGLRLYDGLFKVIPLERDNKELKAFNIRLE--ELHVI-------D 166
Query: 174 CGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSR-KWS-EPVDNGA 231
F +++ QD G +++ YE+ L S+ W E V+ A
Sbjct: 167 VKF---LYSCQAPTICFVYQDPQG-------RHVKTYEVSLREKEFSKGPWKQENVEAEA 216
Query: 232 NMLVTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVL 282
+M++ VP + G ++ + + Y N P ++ V R D+ R +L
Sbjct: 217 SMVIAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDVNGSRYLL 273
Query: 283 IVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGY 342
+ LF LL+ E VTL+ +L+++ + + L +G
Sbjct: 274 -----GDMEGRLFMLLLEKEEQMDGSVTLK-------DLRVELLGETSIAECLTYLDNGV 321
Query: 343 LFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESL 402
+F S G+ L + + TE Q + +V +E +L
Sbjct: 322 VFVGSRLGDSQLVK-----------------LTTESNEQGSY--------VVVMETFTNL 356
Query: 403 MPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKK 462
PI+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++
Sbjct: 357 GPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRV 415
Query: 463 NVNDEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSG 521
+ + D +V+SF T VL++ GE VEE +GF+D + + L+Q+ +
Sbjct: 416 AADRDTDDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSAS 475
Query: 522 IRHIREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHE 579
+R + ++ + ++EW+ P R + N QV++A+ G ++Y+ G+L + E
Sbjct: 476 VRLVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAV--GRVLYYLEIHPGELRQTSCTE 533
Query: 580 MSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSP--PES 636
M +VACLD+ + S A+G + D + RILSL Q+L + + P S
Sbjct: 534 MEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARILSLPG---FQLLHKEMLGGEIIPRS 590
Query: 637 LLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKL 696
+L ++S H +L L +G LF ++ TG LSD + LG +P L
Sbjct: 591 ILMTSFESS--------H----YLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVL 638
Query: 697 FSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNA 756
+ + S RP + Y + + + ++ + + Y +S+ + + +
Sbjct: 639 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNST 698
Query: 757 LRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAK 811
L + TI+ + + + +PL +PR+ Q + ++ + D ++ R +A
Sbjct: 699 LTIGTIDEI-QKLHIRTVPLFESPRKICYQEVSQCFGVLSSRIEVQDASGGSSPLRPSAS 757
Query: 812 KECFEAAGMGE---NGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPR 868
+ ++ +G+ + + G++ ++ L +Q+ + + +++
Sbjct: 758 TQALSSSVSCSKLFSGSTSPHETSFGEEVEVHNLLIIDQHTFEVLHTHQFLQ-------- 809
Query: 869 SANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFV 928
NE S+ + K+ T VGTA + + + G I ++++
Sbjct: 810 ------------NEYTLSLVSCKL-GKDPTTYFVVGTA--MVYPDEAEPKQGRIVVFQY- 853
Query: 929 EEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIV 988
+GK L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N +
Sbjct: 854 NDGK-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNIMAL 912
Query: 989 SINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFG 1048
+ T D I VGD+ S Y+ E A D P W++A +D D GA+
Sbjct: 913 YLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF 972
Query: 1049 NIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV- 1107
N++ + +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 973 NLFVCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVM 1014
Query: 1108 -------PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAY 1160
P SV++GTV G +G + + S + ++ + + + +H +
Sbjct: 1015 QNLGETSPPTQGSVLFGTVNGMIGLVTSL-SESWYNLLLDVQNRLNKVIKSVGKIEHSFW 1073
Query: 1161 RSAYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
RS + P IDGDL E F +S +++ L G +K+
Sbjct: 1074 RSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKR 1122
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 276/1247 (22%), Positives = 509/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + N
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPN 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RI L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAKKEC 814
TI+ + + + +PL +PR+ Q + ++ + D T R +A +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 760
Query: 815 FEAAGMGENGNGNM---DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
++ + + G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ +G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 274/1247 (21%), Positives = 505/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G I
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKI 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY S D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+RD + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE---------ELHVIDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ Q + D + + S MET +L PI
Sbjct: 325 GSRLGDS---QPVKLNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + N
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPN 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE GF+D + + L+Q+ + +R
Sbjct: 419 RETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G +Y+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPRAKNISVASCNSSQVVVAV--GRALYYLQIHPQELRQISHTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLD+ + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDVTPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF +++ TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANTSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIET-----DQGALTAEEREAAKKEC 814
T+ + + + +P+ +PR+ Q + ++ T D T R +A +
Sbjct: 702 GTMNEI-QKLHIRTVPIYESPRKICYQEVSQCFGVLSTRIEVQDTSGGTTALRPSASTQA 760
Query: 815 FEAAGMGENGNGNM---DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
++ + + G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSSSKLFSSSAAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----------- 809
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++++ G
Sbjct: 810 ---------NEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFQY--SG 855
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
L+ + + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 856 GKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ FH+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLFHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV+ GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLLGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKR 1122
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 276/1247 (22%), Positives = 510/1247 (40%), Gaps = 171/1247 (13%)
Query: 2 YLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAI 61
Y Y +T Q+PT + + G+F+ + +++A+ LE+ G + + ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKT 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIH------QETFGKSGCRRIV 115
+ FR G KD + + + ILEY + + D I Q+ G+ I+
Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGII 121
Query: 116 PGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCG 175
+DP+ R + + + V L+R+ + LE + ID
Sbjct: 122 G----IIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQV---------IDVK 168
Query: 176 FDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWS-EPVDNGANML 234
F ++ QD G+ + +L E + G W E V+ A+M+
Sbjct: 169 F---LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKG------PWKQENVEAEASMV 219
Query: 235 VTVPGGGDGPSGVLVCAENFVIYKNQGH------PDVRA---VIPRRADLPAERGVLIVS 285
+ VP + G ++ + + Y N P ++ V R D R +L
Sbjct: 220 IAVP---EPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLL--- 273
Query: 286 AATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFA 345
+ LF LL+ E VTL+ +L+++ + + L +G +F
Sbjct: 274 --GDMEGRLFMLLLEKEEQMDGTVTLK-------DLRVELLGETSIAECLTYLDNGVVFV 324
Query: 346 ASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPI 405
S G+ L + + D + + S MET +L PI
Sbjct: 325 GSRLGDSQLVK---LNVDSNEQGSYVVAMET----------------------FTNLGPI 359
Query: 406 MDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVN 465
+DM + +L + Q+ T G SLRI+R G+ + E A LPG+ +W ++ + +
Sbjct: 360 VDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDSH 418
Query: 466 DEFDAYIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRH 524
E D +V+SF T VL + GE VEE +GF+D + + L+Q+ + +R
Sbjct: 419 REMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRL 478
Query: 525 IREDGR--INEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG 582
+ ++ + ++EW+ P + I N QVV+A+ G L Y E+ +L ++ EM
Sbjct: 479 VSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEI-RPQELRQINCTEMEH 536
Query: 583 DVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCM--QILSVQSVSSPPESLLF 639
+VACLDI + + S A+G + D + RIL L + + ++L + + P S+L
Sbjct: 537 EVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII---PRSILM 593
Query: 640 LEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSV 699
++S H +L L +G LF + + TG LSD + LG +P L +
Sbjct: 594 TTFESS--------H----YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTF 641
Query: 700 VVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRV 759
+ S RP + Y + + + ++ + + Y +SD + + + L +
Sbjct: 642 RSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTI 701
Query: 760 FTIERLGETFNETALPLRYTPRRFVLQPKKKLM------VIIETDQGALTAEEREAAKKE 813
TI+ + + + +PL +PR+ Q + + ++ G TA A+ +
Sbjct: 702 GTIDEI-QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQA 760
Query: 814 CFEAAGMGENGNGNMDQMEN--GDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSAN 871
+ + + + E G++ ++ L +Q+ + + +++
Sbjct: 761 LSSSVSTSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL------------ 808
Query: 872 TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG 931
NE A S+ + K+ T VGTA + + + G I ++ + +G
Sbjct: 809 --------QNEYALSLVSCKL-GKDPNTYFIVGTA--MVYPEEAEPKQGRIVVFHY-SDG 856
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSIN 991
K L+ L + +V+G ++ +F G+LLA I +RLY+ ++ LR N + +
Sbjct: 857 K-LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNIMALYLK 915
Query: 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIY 1051
T D I VGD+ S Y+ E A D P W++A +D D GA+ N++
Sbjct: 916 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 975
Query: 1052 FVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLV---- 1107
+ +D + +E+ ++E+ H+G+ V SLV
Sbjct: 976 VCQ--KDSAATTDEE----------------RQHLQEVGLSHLGEFVNVFCHGSLVMQNL 1017
Query: 1108 -----PGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRS 1162
P G SV++GTV G +G + + S + ++ + + + +H +RS
Sbjct: 1018 GETSTPTQG-SVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS 1075
Query: 1163 AYF-----PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKK 1204
+ P IDGDL E F +S +++ L G +K+
Sbjct: 1076 FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKR 1122
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 278/1319 (21%), Positives = 522/1319 (39%), Gaps = 246/1319 (18%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA 60
MY + T+Q+PT + ++ GNF+G +++++ +E+ + G ++ + I+G
Sbjct: 1 MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDG-LKPMFDVNIYGR 59
Query: 61 IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYN-PSKNVFDKIH---QETFGKSGCRRIVP 116
I L F + GS++DY+ + ++S + IL Y+ K + K ++T G R
Sbjct: 60 ISVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIG----RPTEA 115
Query: 117 GQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTIS---------------------- 154
GQ +DP GR V + E + L+ + +
Sbjct: 116 GQLGIIDPDGRIVALHLYEGLLKLITLDNNNTPNKINNNNNNNNNNNNNNNNNNNNNINN 175
Query: 155 -----------SPLEAHKSHTIVYSICGIDCGF----DNPIFAAIELDYSEADQDSTGQA 199
SP++ + ++ + + +D F P A + D + ST +
Sbjct: 176 NNFNINNNNNNSPIQKNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEI 235
Query: 200 ASEAQKNLTFYELDLGLNHVSRKWSEP-VDNGANMLVTVPGGGDGPSGVLVCAENFVIYK 258
+S+ EL +G WS+ V +++LV VP GG VLV A+N + Y
Sbjct: 236 SSKDT------ELVVG------PWSQSNVGVYSSLLVPVPLGG-----VLVVADNGITYL 278
Query: 259 NQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNEHV 318
N + R + + + A T K FL +G + + L H + V
Sbjct: 279 N-------GKVTRSVAVSYTKFL----AFTRVDKDGSRFLFGDHFGRLSVLVLIHQQQKV 327
Query: 319 SELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEE 378
ELK + I + +S+ L SG ++ S G+ Q I + + + ++ + + E
Sbjct: 328 MELKFEQLGRISIPSSISYLDSGVVYIGSSSGDS-----QLIRLNTEKDQTTDSYVTYLE 382
Query: 379 GFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRP 438
F ++ P++D + + ++ QI T G SLRI+R
Sbjct: 383 AFT-------------------NIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRIIRN 423
Query: 439 GLAVSEMAVSQLPGVP--------------------SAVWTVKKNVNDEFDAYIVVSFNN 478
G+ ++E A +L G+ + + D D Y++ SF
Sbjct: 424 GIGIAEQASIELEGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKDRYLITSFIE 483
Query: 479 ATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGD-DSLMQVHPSGIRHIREDG--RINEW 534
T VLS GE +EE G +L I + L+Q+ I I + R+++W
Sbjct: 484 CTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLIDSNTFKRVSQW 543
Query: 535 RTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKH-EMSGDVACLDIASVP 593
R I V +N+ Q+V+++ L+YF+++ + + +++ K E+ +++C+DI+
Sbjct: 544 NVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINSSNKSIQLVKEIELPHEISCIDISPFD 602
Query: 594 EGR-KRSRFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDG 651
+S+ ++VG + D T+RI L +++ + P L + D
Sbjct: 603 SFMDTKSQLVSVGLWNDITLRIFKLP--------TLEEIWKEPLGGEILPRSILMISFDS 654
Query: 652 ADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLS 711
D ++ L +G LF+ D + +L D R LG +P L + + +S
Sbjct: 655 ID-----YIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFAIS 709
Query: 712 SRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNE 771
RP + Y H + + ++ + + SF+SD + N+L + TI+ + + +
Sbjct: 710 DRPTVIYSHNKKLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLHIK 769
Query: 772 TALPLRYTPRRFVLQPKKK---LMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNM 828
T +PL R ++ + ++ ++ ++G L A+ C
Sbjct: 770 T-IPLNEEMGRRIVHLEDHSCYAVITVKNNEGLLG-----GAQDLC-------------- 809
Query: 829 DQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSIC 888
E D+ VS IR+ + ++ +L E +SI
Sbjct: 810 -------------------------EEDEEVSYIRIYNDQTFELISSYKLDPYEMGWSIT 844
Query: 889 TVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFV-----------------EEG 931
F + T LAVGT+ ++ + G
Sbjct: 845 PCKFAGDDVNTYLAVGTSINTPIKSSGRVLLFSLSSSSSSNDKDSLDNNNNNNNNSGANG 904
Query: 932 KSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDL----GKKRLLRKCENKLF---P 984
K L LL + + L F GRL+A + RL+ + K++ + ++
Sbjct: 905 K-LTLLEEIKFRSSVYFLLSFNGRLIAAVHK--RLFSIRYTHSKEKNCKVISSESVHKGH 961
Query: 985 NTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGA 1044
I+ + + I VGD+ +S + D L A + P W+ + I+ D GA
Sbjct: 962 TMILKLASRGHFILVGDMMKSMSLLVEQSD-GSLEQIARNPQPIWIRSVAMINDDYFIGA 1020
Query: 1045 DKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKA 1104
+ N V+ D ++E+E + ++ + +H+G+ + S++
Sbjct: 1021 EASNNFIVVKKNNDSTNELEREL------------------LDSVGHYHIGESINSMRHG 1062
Query: 1105 SLV--PGGGE----SVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 1158
SLV P + +++Y +V GS+G + + S D + FFS L+ + Q + G H
Sbjct: 1063 SLVRLPDSDQPIIPTILYASVNGSIGVVASISEEDFI-FFSKLQKGLNQVVRGVGGFSHE 1121
Query: 1159 AYRS-----AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNKI 1212
+R+ K+ IDGDL E F L + Q K +L TP + +++E + I
Sbjct: 1122 TWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQLKAVADLGITPDDAFRRIESLMQYI 1180
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1 PE=1
SV=2
Length = 1134
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 275/1268 (21%), Positives = 507/1268 (39%), Gaps = 205/1268 (16%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVL--ELLRPENSGRIETLVSTEIFGAI 61
Y ++ ++ + ++ ++ GNF+G + ++VARG + +L+ PE ++ + I+G +
Sbjct: 5 YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEG---LKNVCEIPIYGQV 61
Query: 62 RSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYLA 121
++A + ++ ++V ++ + IL Y K V +GC
Sbjct: 62 LTIALVKCKRDKRHSLIVVTEKWHMAILAYRDGKVVTRA--------AGC---------I 104
Query: 122 VDPKGRA---VMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDN 178
DP GRA + + L+ + + + ++ +S T + + FD
Sbjct: 105 ADPTGRATDNLFSLTIHRNGLIAIRAFEGSVKMI------QWESGT---DLRHFNVRFDY 155
Query: 179 PIFAAIELDYSEADQDSTGQAA----SEAQKNLTFYELDLG---LNHVSRKWSEPVDNGA 231
P + + + + +D + A + K+L F +L++ SR+ S D +
Sbjct: 156 PNVS--DFKFVDTGEDDVYRVAFIYDDDHGKHLQFSDLNMHDKEFRTYSRQASIAAD--S 211
Query: 232 NMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVL---IVSAAT 288
++L+ VP GV+V N V+YK + ++ V+P L IV A+
Sbjct: 212 SVLIPVP---HAIGGVIVLGSNSVLYK--PNDNLGEVVPYTCSLLENTTFTCHGIVDASG 266
Query: 289 HRQKTLFFFLLQTEYGDIF----KVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLF 344
R FLL G + VT V E++I Y + S+ + +G +F
Sbjct: 267 ER------FLLSDTDGRLLMLLLNVTESQSGYTVKEMRIDYLGETSIADSINYIDNGVVF 320
Query: 345 AASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMP 404
S G+ L + +P G V +E ++ P
Sbjct: 321 VGSRLGDSQLIRLMT--------------------------EPNGGSYSVILETYSNIGP 354
Query: 405 IMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNV 464
I DM + + PQ+ T G SLR++R G+ + E+A L GV ++ ++ +
Sbjct: 355 IRDMVMVE--SDGQPQLVTCTGADKDGSLRVIRNGIGIDELASVDLAGV-VGIFPIRLDS 411
Query: 465 NDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSL----AVSLIG-DDS--LMQV 517
N D Y++VS ++ T VL I T EE+ D L+ L A +L G +DS ++Q
Sbjct: 412 N--ADNYVIVSLSDETHVLQI--TGEELEDVKLLEINTDLPTIFASTLFGPNDSGIILQA 467
Query: 518 HPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFE---VDMTGQL-- 572
IR + G W I KV N I L+ + +Y VD G L
Sbjct: 468 TEKQIRLMSSSGLSKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDI 527
Query: 573 -LEVEKHEMSGDVACLDIASVPEG---RKRSRFLAVGSYDN-TIRILSLDPDDCMQILSV 627
L EK + ++ACLD+++ EG ++ FL + + + ++ L PD +++V
Sbjct: 528 QLTAEK-KFENEIACLDLSN--EGDDPNNKATFLVLAFWSTFAMEVIQL-PD----LITV 579
Query: 628 QSVSSP----PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSD 683
P P S++ ++ H +L +G L V D+ TG +
Sbjct: 580 CHTDLPTKIIPRSIIATCIEEV--------H----YLLVAFGDGALVYYVFDIKTGTHGE 627
Query: 684 SRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSD 743
+ +G RPP L V R + S RP + + + + + ++ + ++ S SS
Sbjct: 628 PKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVIIFSASKKLVFSNVNVKLVDTVCSLSSS 687
Query: 744 QCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALT 803
+ +V GN++ T++ + + + ++P+ + R Q T +
Sbjct: 688 AYRDCLVISDGNSMVFGTVDDI-QKIHVRSIPMGESVLRIAYQKS--------TSTYGVC 738
Query: 804 AEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIR 863
+ E+ + F + D ++ P + S
Sbjct: 739 SNRTESKAERVFASKNALVTSQSRPKVASTRADMDESPPNT--------------TSSFM 784
Query: 864 VLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIH 923
VLD + E E A S + F + + T VGT GL + + G I
Sbjct: 785 VLDQNTFQVLHSHEFGPWETALSCISGQFTN-DSSTYYVVGT--GLIYPDETETKIGRIV 841
Query: 924 IYRF--VEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENK 981
++ VE K L +H+ V G PLA+ G+L+A I +RL++ + LR E
Sbjct: 842 VFEVDDVERSK-LRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELR-LECS 899
Query: 982 LFPNTI-VSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDT 1040
F + I + + + + V D+ S YR E A D +W+ I ++
Sbjct: 900 SFNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAES 959
Query: 1041 MAGADKFGNIYFVRLPQDVSDEIEED------PTGGKIKWEQGKLNGAPNKMEEIVQFHV 1094
+ G + N++ V + D + I +D PTG W G+L + ++Q
Sbjct: 960 ILGGEAHLNLFTVEV--DKTRPITDDGRYVLEPTG---YWYLGELPKVMTRSTLVIQ--- 1011
Query: 1095 GDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCG 1154
+ S++ + +++GT G++G ++ + F +E +
Sbjct: 1012 -------PEDSIIQ-YSQPIMFGTNQGTIGMIVQIDDKWK-KFLIAIEKAIADSVKNCMH 1062
Query: 1155 RDHMAYRSAYF-----PVKDVIDGDLCEQF----PTLSLDLQRKIADE-----LDRTPGE 1200
+H +YR+ F P +DGDL E ++++D+ K++D+ L R P E
Sbjct: 1063 IEHSSYRTFVFQKRAEPPSGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVE 1122
Query: 1201 ILKKLEEI 1208
ILK +E++
Sbjct: 1123 ILKVIEDL 1130
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1
PE=3 SV=1
Length = 1296
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 180/807 (22%), Positives = 336/807 (41%), Gaps = 132/807 (16%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEI--F 58
M LY LTLQ+ + + ++ G+F G + E+VVA +EL + +G++ V +I F
Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNELVVATQTHIELY--DFAGKVRRKVGNDIVLF 58
Query: 59 GAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQET-----FGKSGCRR 113
++ +L +++G + G +V+ ++ S D++ ++ F S +
Sbjct: 59 TSLLALDTIWDEDGLAHLVMLGQN-GNLVVAKFALSG---DRLQLDSEFLYRFDNSVEKT 114
Query: 114 IVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPL-EAHKSHTIVYSICGI 172
+P V ++++ QK+V ++ R SP+ ++ H++V +C +
Sbjct: 115 WLP----KVVANKSSILVTWGLTQKIVVPVSWSQEPRF--RSPIFFSNAEHSVVLELCSL 168
Query: 173 DCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLG---LNHVSRKWSEPVDN 229
D+ + ++ELD + N F++ +L L + S VD+
Sbjct: 169 TSFEDH--YVSLELD----------TRLKVYKLNFLFFDRNLQSLLLTNSYNLKSNEVDD 216
Query: 230 GANMLVTVPG--------------GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPR--RA 273
N + +P P ++ ++ +I G ++ P
Sbjct: 217 RPNFITDIPDLAVYGVSTAINKSTSKKNPFVLIGFNKHILIKDMMGIYSLKCEFPADIME 276
Query: 274 DLPAERGVLIVSAATH--RQKTLFFFLLQTEYGDIFKVTLEHDNEHVSE--LKIKYFDT- 328
LP ++ +LIV++ + F LLQT G +FKV + + E + K+ YFD
Sbjct: 277 SLPMDKKLLIVASDLQILKNNVGFLLLLQTNTGHLFKVIIFPNEEDRNRPIAKLGYFDKV 336
Query: 329 --IPVTASMCVLKSGYLFAASEFG-NHALYQFQAIGADPDVEASSSTLMETEEGFQPVFF 385
I ++ + + +G ++ S+F +H F++IG + +E + +
Sbjct: 337 KHISNSSKLHIFNNGSMYINSQFNYDHVYLNFESIG-------------DNDENYDKI-- 381
Query: 386 QPRGLKNLVRIEQVESLMPIMDMRIANL-FEEEAPQIFTLCGRGPRSS----LRILRPGL 440
+N+ I + ++ PI NL E P F G R++ + I+R +
Sbjct: 382 -DNENENISVISKHTNINPIA----LNLCLMENMPLTFMHFQGGNRTTDSEKVNIIRNAI 436
Query: 441 AVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNATLVLSIG-ETVEE---VSDSG 496
+ E S LP S ++T+K + N T++L I +++E+ SD+
Sbjct: 437 PLKEYVSSPLPQGVSNIFTIKTQYQSYHSFIFLTMINFTTVILKIADDSIEQYIPASDTF 496
Query: 497 FLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINE-------WRTPGKRTIVKVGSNR 549
L ++ V+ +GD+S++QV R I D + E W P +I+ SN
Sbjct: 497 KLKDDMTIHVATMGDNSIIQVCKDEFRQILLDSKDEENFKMNLKWYPPAGVSILSAVSNF 556
Query: 550 LQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDN 609
Q+++ALS E++Y +++ L+E + DV +A + + K+S LAVG+ DN
Sbjct: 557 SQLILALSNNEIVYLQLE-NNTLIEYKNRPELPDVIT-SLALLNDNTKKSEILAVGTSDN 614
Query: 610 TIRILSLDPDD---CMQILSVQSVSSPPESLLFLE-----VQASVGGEDGADHPASLFLN 661
+ +LSL+ D + + Q++ + P SLL L V +G EDG+ L L
Sbjct: 615 MVNVLSLEIVDEAISFETVVFQALDAIPSSLLILNQGHKLVNLHIGVEDGSYLVNRLDLR 674
Query: 662 AGLQNGVLFRTV------------VDMVTGQLS-------DSRSRFLGLRPPKLFSVVVG 702
N +L + + VD+ L +S+ L R K VV+
Sbjct: 675 NMSINNILRKQLGTRSIKALNHIGVDLRNDTLQYDDDESGNSKENTLKNRGEKTSVVVIH 734
Query: 703 GRAAMLCLSSRPWLGYIHRGRFLLTPL 729
G +R W Y + PL
Sbjct: 735 G--------NRTWANYSSHSNMYIRPL 753
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 143/355 (40%), Gaps = 78/355 (21%)
Query: 934 LELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKL--FPNTIVSIN 991
+EL+H+T + + F+ L+ L ++GK +LL K + I ++
Sbjct: 945 MELIHETHFDNEVFCIKVFRDMLIVPQYNRLLFCEVGKTKLLNKMIGPAVDYVEKITVLD 1004
Query: 992 TYRD-RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNI 1050
+ D RI +GD + S ++ +++ + A+D R +TA +D T+ G DKFG++
Sbjct: 1005 CWADDRIAIGDFRNSVSLLQFSS-SHEVNVIANDICTRDVTAIKFLDRSTIIGGDKFGSV 1063
Query: 1051 YFVRLP-QDVSDEIEEDPTGGKIKWEQGKL-------NGAPN------KMEEIVQFHVGD 1096
+ +RL QD ++I + K++ +Q L APN K++ + QF + D
Sbjct: 1064 WVLRLSIQD--EKILQSCDNNKVELQQHLLREKGTLREKAPNILNTYFKLDLVNQFFIND 1121
Query: 1097 VVTSLQKASLVPGGGESVI-YGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGR 1155
+VT + +I Y + G++G +L + ++ +E M+ +
Sbjct: 1122 IVTGFSVEEITQASDRPIIFYYGIQGTIGCLLPLLVKSEISKLRSIEQMMKSADETWFLK 1181
Query: 1156 ----------------------------DHMAYRSA------------------------ 1163
DH R+A
Sbjct: 1182 NELLNEKIGIELEDKENHEYDLAVHSVIDHEVGRTAGNWASSSGFIEGKFTTLDCDHTAY 1241
Query: 1164 ---YFPVKDVIDGDLCEQFPTLSLDLQRKIADEL--DRTPGEILKKLEEIRNKIV 1213
Y PVK+VIDGD+CE + L+ DL+ + D I++ L ++RN +
Sbjct: 1242 RSYYAPVKNVIDGDICETYLNLTDDLKAYLTKHASPDNDLTTIVQTLMKVRNNFI 1296
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 160/838 (19%), Positives = 322/838 (38%), Gaps = 93/838 (11%)
Query: 4 YSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRS 63
Y L +P+ I A+ F + ++VA+ LE+ EN+ R+ + S IF I +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN-RLCLITSANIFAKIVN 61
Query: 64 LAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKN-VFDKIHQETFGKSGCRRIVPGQYLAV 122
+ F+ S D+I+V +DS R L ++ + N V + I + + R G L V
Sbjct: 62 VKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLV 121
Query: 123 DPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTI-VYSICGIDCGF----D 177
DP R + + + + + + +T + H + ++ + + +D
Sbjct: 122 DPFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNSS 181
Query: 178 NPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTV 237
P A + D ST + Q+ E D+ + + P +NG
Sbjct: 182 RPSLAVLYKDSKSIVHLSTYKINVREQE---IDEDDVVCHDIEEGKLIPSENG------- 231
Query: 238 PGGGDGPSGVLVCAENFVIY--KNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLF 295
GV V E +V Y K+ + P A P+ +S
Sbjct: 232 --------GVFVFGEMYVYYISKDIQVSKLLLTYPITAFSPS------ISNDPETGLDSS 277
Query: 296 FFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALY 355
+++ E G ++K +E VS ++++ + + + L +LF S F N L
Sbjct: 278 IYIVADESGMLYKFKALFTDETVS-MELEKLGESSIASCLIALPDNHLFVGSHFNNSVLL 336
Query: 356 QFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFE 415
Q P + ++ L L+N V I PI D I + +
Sbjct: 337 QL------PSITKNNHKL--------------EILQNFVNIA------PISDFIIDD--D 368
Query: 416 EEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVS 475
+ I T G +LRI+R + + +A+ ++ G+ ++V N +D YI +S
Sbjct: 369 QTGSSIITCSGAYKDGTLRIIRNSINIENVALIEMEGIKD-FFSVSFRAN--YDNYIFLS 425
Query: 476 FNNATLVLSIG-ETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEW 534
T + + E V + + + ++ G+ ++Q+ IR + + +++ W
Sbjct: 426 LICETRAIIVSPEGVFSANHDLSCEESTIFVSTIYGNSQILQITTKEIR-LFDGKKLHSW 484
Query: 535 RTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPE 594
+P +I S V +A++GG +++FE + EV +++ +V+ L
Sbjct: 485 ISP--MSITCGSSFADNVCVAVAGGLILFFE-----GITEVGRYQCDTEVSSLCFT---- 533
Query: 595 GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADH 654
+ VG + I +L+ D S++ ++ P S+++ + GG
Sbjct: 534 ---EENVVYVGLWSADIIMLTYCQDGISLTHSLK-LTDIPRSIVYSQKYGDDGGTLYVST 589
Query: 655 PASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRP 714
L QNG + + R LG+ P L + A+ L +P
Sbjct: 590 NNGYVLMFNFQNGQVIEHSL----------RRNQLGVAPIILKHFDSKEKNAIFALGEKP 639
Query: 715 WLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETAL 774
L Y + ++TPLS + +S+ + ++ + + + + + + N +
Sbjct: 640 QLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNMLYCTNSYISLAKMSEI-RSLNVQTV 698
Query: 775 PLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQME 832
++ PRR ++ ++ ++ T E+R + +E + E + ++ E
Sbjct: 699 SVKGFPRRICSNSLFYFVLCMQLEESIGTQEQRLLSFLRVYEKNTLSEIAHHKFNEYE 756
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2
Length = 1441
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 156/366 (42%), Gaps = 57/366 (15%)
Query: 872 TTCLLELQDNEAAFSICTVNFHD---KEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYRF 927
T + +Q E A ++ V H+ KE+ TLLA+GTA L ++ A G + ++ F
Sbjct: 1097 TKSTIPMQLFENALTVRIVTLHNTTTKENETLLAIGTAYVL----GEDVAARGRVLLFSF 1152
Query: 928 VEEGKSLELL---HKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFP 984
+ S L+ + + +G A+ QG LL GP + L L P
Sbjct: 1153 TKSENSQNLVTEVYSKESKGAVSAVASLQGHLLIASGPKITLNKWTGAELTAVAFYDA-P 1211
Query: 985 NTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD--SVPRWLTAAHHIDFDTMA 1042
+VS+N ++ + GDI +S +F ++ +QL + A D S+ + T ID T++
Sbjct: 1212 LHVVSLNIVKNFVLFGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFAT-EFLIDGSTLS 1270
Query: 1043 --GADKFGNI-YFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVT 1099
+D N+ F P+ V W+ KL +FHVG +T
Sbjct: 1271 LVASDSDKNVQIFYYAPKMVE------------SWKGQKLLSR-------AEFHVGAHIT 1311
Query: 1100 SLQKASLVPGGGES--------VIYGTVMGSLGAMLAFSSRDDVDF--FSHLEMHMRQEH 1149
+ ++P G S +++G + G +G + D++ F L+ +
Sbjct: 1312 KFLRLQMLPTQGLSSEKTNRFALLFGNLDGGIGCIAPI---DELTFRRLQSLQRKLVDAV 1368
Query: 1150 PPLCGRDHMAYRSAYFPVK-------DVIDGDLCEQFPTLSLDLQRKIADELDRTPGEIL 1202
P +CG + ++R + K ++ID +L + LSLD Q +A ++ T +IL
Sbjct: 1369 PHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLCSYEMLSLDEQLDVAQQIGTTRSQIL 1428
Query: 1203 KKLEEI 1208
+I
Sbjct: 1429 SNFSDI 1434
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 138/340 (40%), Gaps = 68/340 (20%)
Query: 245 SGVLVCAENFVIYKNQG------------HPDVRAVIPRRADLPAERGVLIVSAATHRQK 292
SGVLV N + Y +Q HPD I +++ E L + AT
Sbjct: 324 SGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPEI-SKSNFQVE---LDAAKATWLSN 379
Query: 293 TLFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNH 352
+ F T+ G++ +T+ +D V L + +++++ + + + F S G+
Sbjct: 380 DIVMF--STKAGEMLLLTVVYDGRVVQRLDLMKSKASVLSSAVTSIGNSFFFLGSRLGDS 437
Query: 353 ALYQFQAIGA-----------DPDVEAS----------SSTLMETEEGFQPVFFQ----P 387
L QF + D+E S +++ + + FQ P
Sbjct: 438 LLVQFSYCASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQDVTSVEELSFQNIIAP 497
Query: 388 RGLKNLVRIEQV--ESLM---PIMDMRI---ANL-------FEEEAPQIFTLCGRGPRSS 432
L++ +I + ++L+ P+ D AN ++ ++ G G S
Sbjct: 498 NSLESAQKISYIVRDALINVGPLKDFSYGLRANADPNAMGNAKQSNYELVCCSGHGKNGS 557
Query: 433 LRILRPGLAVSEMAVSQLPGVPSAVWTV-------KKNVNDEFDAYIVVSFNNATLVLSI 485
L +L+ + + +LP +WTV + ++E+ AY+++S N T+VL
Sbjct: 558 LSVLQQSIRPDLITEVELPSC-RGIWTVYYKSYRGQMAEDNEYHAYLIISLENRTMVLET 616
Query: 486 GETVEEVSDS--GFLDTTPSLAVSLIGDDSLMQVHPSGIR 523
G+ + EV+++ F+ + A +L G ++QV+ G R
Sbjct: 617 GDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGAR 656
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1
OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2
Length = 1442
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 162/377 (42%), Gaps = 56/377 (14%)
Query: 862 IRVLDPRSAN----TTCLLELQDNEAAFSICTV---NFHDKEHGTLLAVGTAKGLQFWPK 914
I++L+P + T + +Q +E A ++ V N E+ TLLAVGTA +
Sbjct: 1085 IQILEPERSGGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTA----YVQG 1140
Query: 915 RNIVA-GYIHIYRFVEEGKS----LELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDL 969
++ A G + ++ F + G + + ++ +++G A+ QG LL GP + L+
Sbjct: 1141 EDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELKGAISAVASIQGHLLISSGPKIILHKW 1200
Query: 970 GKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRW 1029
L P +VS+N + I +GD+ +S +F ++ +QL + A D
Sbjct: 1201 NGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVHKSIYFLSWKEQGSQLSLLAKDFESLD 1260
Query: 1030 LTAAHH-IDFDT--MAGADKFGNI-YFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNK 1085
A ID T +A +D+ NI F P+ + W+ KL
Sbjct: 1261 CFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMIE------------SWKGLKLLSR--- 1305
Query: 1086 MEEIVQFHVGDVVTSLQKASLVPGGGESV-----IYGTVMGSLGAMLAFSSRDDVDF--F 1138
+FHVG V+ + +V G + + ++GT+ GS G + D+V F
Sbjct: 1306 ----AEFHVGAHVSKFLRLQMVSSGADKINRFALLFGTLDGSFGCIAPL---DEVTFRRL 1358
Query: 1139 SHLEMHMRQEHPPLCGRDHMAYRSAYFPVK-------DVIDGDLCEQFPTLSLDLQRKIA 1191
L+ + P + G + +A+R K ++D +L + L L+ Q ++A
Sbjct: 1359 QSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELA 1418
Query: 1192 DELDRTPGEILKKLEEI 1208
++ T ILK L ++
Sbjct: 1419 HQIGTTRYSILKDLVDL 1435
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 121/339 (35%), Gaps = 62/339 (18%)
Query: 246 GVLVCAENFVIYKNQGHPDVRAV------IPRRADLPAERGVLIVSAATHRQKTLFFFLL 299
GVLV N + Y +Q A+ +LPA + + AA + LL
Sbjct: 323 GVLVLCANTIHYHSQSASCALALNNYASSADSSQELPASNFSVELDAAHGTWISNDVALL 382
Query: 300 QTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQA 359
T+ G++ +TL +D V L + + + + + + F S G+ L QF
Sbjct: 383 STKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITSVGNSLFFLGSRLGDSLLVQFSC 442
Query: 360 IGA-----------DPDVEA---SSSTLMETEEGFQPVF--------------------- 384
D D+E + L T + FQ
Sbjct: 443 RSGPAASLPGLRDEDEDIEGEGHQAKRLRMTSDTFQDTIGNEELSLFGSTPNNSDSAQKS 502
Query: 385 FQPRGLKNLVRIEQVE----SLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGL 440
F +LV + V+ L D + ++ ++ G G +L +LR +
Sbjct: 503 FSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNGALCVLRQSI 562
Query: 441 AVSEMAVSQLPGVPSAVWTVKKNVN--------------DEFDAYIVVSFNNATLVLSIG 486
+ +LPG +WTV + DE+ AY+++S T+VL
Sbjct: 563 RPEMITEVELPGC-KGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETA 621
Query: 487 ETVEEVSDS--GFLDTTPSLAVSLIGDDSLMQVHPSGIR 523
+ + EV++S ++ A +L G ++QV G R
Sbjct: 622 DLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGAR 660
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus
musculus GN=Cpsf1 PE=1 SV=1
Length = 1441
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 131/634 (20%), Positives = 234/634 (36%), Gaps = 120/634 (18%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR--------PENSG----- 47
MY PTG+ + NF +VVA L + R +N G
Sbjct: 1 MYAVYKQAHPPTGLEFTMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTEGK 60
Query: 48 ----RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQ 103
++E + S FG + S+A +L G+++D +++ ++ ++EY+P + +
Sbjct: 61 AHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120
Query: 104 ETFG----KSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEA 159
F + G + V + VDP GR + + +V R++ A E
Sbjct: 121 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEG 180
Query: 160 HKSHTIVYSICG-----------IDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLT 208
+S + I ID F + + L E +Q G+ A Q +
Sbjct: 181 QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QDTCS 239
Query: 209 FYELDLGLNHVSRK--W---SEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHP 263
+ L + W S P D + V P G GV++ A N ++Y NQ P
Sbjct: 240 IVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIG-----GVVIFAVNSLLYLNQSVP 294
Query: 264 DVRAVIPRRAD------LPAERGVLI-VSAATHRQKTLFFFLLQTEYGDIFKVTLEHDNE 316
+ L + GV I + A + ++ + G+I+ +TL D
Sbjct: 295 PYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDG- 353
Query: 317 HVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALYQFQAI-----------GA 362
+ ++ +FD +T SM ++ GYLF S GN L ++ A
Sbjct: 354 -MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASSVREAA 412
Query: 363 DPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRI----------------EQVESLMPIM 406
D + S +E G+ P+ + + + E +S++ I
Sbjct: 413 DKEEPPSKKKRVEPAVGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIG 472
Query: 407 DMRIANLFE--------EEAP----QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVP 454
A + E + +P +I G G +L +L+ + + +LPG
Sbjct: 473 PCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGC- 531
Query: 455 SAVWTVKKNVNDEFD------------------------AYIVVSFNNATLVLSIGETVE 490
+WTV V E + ++++S ++T++L G+ +
Sbjct: 532 YDMWTVIAPVRKEEEETPKAESTEQEPSAPKAEEDGRRHGFLILSREDSTMILQTGQEIM 591
Query: 491 EVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 592 ELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIR 625
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos
taurus GN=CPSF1 PE=1 SV=1
Length = 1444
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 131/641 (20%), Positives = 237/641 (36%), Gaps = 131/641 (20%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLR------------------ 42
MY PTG+ ++ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAPTKNDRSTDGK 60
Query: 43 --PENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDK 100
E+ ++E + S FG + S+A +L G+++D +++ ++ ++EY+P +
Sbjct: 61 AHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKT 120
Query: 101 IHQETFG----KSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSP 156
+ F + G + V + VDP GR + + +V R++ A
Sbjct: 121 LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLV 180
Query: 157 LEAHKSHTIVYSICG-----------IDCGFDNPIFAAIELDYSEADQDSTGQAASEAQK 205
E +S + I +D F + + L E +Q G+ A Q
Sbjct: 181 GEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QD 239
Query: 206 NLTFYELDLGLNHVSRK--W---SEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQ 260
+ + L + W S P D + V P G GV++ A N ++Y NQ
Sbjct: 240 TCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIG-----GVVIFAVNSLLYLNQ 294
Query: 261 GHPDVRAVIPRRAD------LPAERGVLI-VSAATHRQKTLFFFLLQTEYGDIFKVTLEH 313
P + L + GV I + A + ++ + G+I+ +TL
Sbjct: 295 SVPPYGVALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLIT 354
Query: 314 DNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASS 370
D + ++ +FD +T SM ++ GYLF S GN L ++ +P +
Sbjct: 355 DG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEP----PA 408
Query: 371 STLMETEEGFQPVFFQPR--------GLKNLVR-----------------------IEQV 399
ST E + +P + R G K++ + E
Sbjct: 409 STAREAADKEEPPSKKKRVDATTGWSGSKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVC 468
Query: 400 ESLMPIMDMRIANLFE--------EEAP----QIFTLCGRGPRSSLRILRPGLAVSEMAV 447
+S++ I A + E + +P +I G G +L +L+ + +
Sbjct: 469 DSILNIGPCANAAMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTT 528
Query: 448 SQLPGVPSAVWTVKKNVNDEFD------------------------AYIVVSFNNATLVL 483
+LPG +WTV V E + ++++S ++T++L
Sbjct: 529 FELPGC-YDMWTVIAPVRKEQEETLKGEGTEPEPGAPEAEDDGRRHGFLILSREDSTMIL 587
Query: 484 SIGETVEEVSDSGFLDTTPSLAVSLIGDDS-LMQVHPSGIR 523
G+ + E+ SGF P++ IGD+ ++QV P GIR
Sbjct: 588 QTGQEIMELDASGFATQGPTVFAGNIGDNRYIVQVSPLGIR 628
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 110/551 (19%), Positives = 205/551 (37%), Gaps = 85/551 (15%)
Query: 695 KLFSVVVGGRAAMLCLSSRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVVSVA 753
+ F + G +C S WL RG L P+ + ++ A F + C G +
Sbjct: 933 RYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNINCPRGFLYFN 992
Query: 754 GNA-LRVFTIE---RLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREA 809
LR+ + + +PLR T + K+ + + T R
Sbjct: 993 RQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTSTPCTRVPRMT 1052
Query: 810 AKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRS 869
+++ FE DE+Y +P+ E+ CI+++ P S
Sbjct: 1053 GEEKEFETIE------------------------RDERYVHPQQEA----FCIQLISPVS 1084
Query: 870 --ANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVA-GYIHIYR 926
A +EL++ E + TV+ +E + L A G + G I I
Sbjct: 1085 WEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMD 1144
Query: 927 FV----EEGKSL-----ELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL--L 975
+ E G+ L ++L++ + +G ALC G L++ IG + L+ L L +
Sbjct: 1145 VIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGM 1204
Query: 976 RKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH 1035
+ +L+ + ++S+ + I D+ +S +Y+ + L + + D+ P +
Sbjct: 1205 AFIDTQLYIHQMISVKNF---ILAADVMKSISLLRYQEESKTLSLVSRDAKP---LEVYS 1258
Query: 1036 IDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVG 1095
+DF M + G + VSD + + G ++ FHVG
Sbjct: 1259 VDF--MVDNAQLGFL--------VSDRDRNLMVYMYLPEAKESFGGM--RLLRRADFHVG 1306
Query: 1096 DVVTSL------------QKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEM 1143
V + K S+V + T+ G +G +L + L+
Sbjct: 1307 AHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLM-LQN 1365
Query: 1144 HMRQEHPPLCGRDHMAYRSAYF-------PVKDVIDGDLCEQFPTLSLDLQRKIADELDR 1196
+ P G + A+R + V++V+DG+L ++ LS + ++A ++
Sbjct: 1366 ALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGT 1425
Query: 1197 TPGEILKKLEE 1207
TP IL L E
Sbjct: 1426 TPDIILDDLLE 1436
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo
sapiens GN=CPSF1 PE=1 SV=2
Length = 1443
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/418 (21%), Positives = 154/418 (36%), Gaps = 61/418 (14%)
Query: 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSG------------- 47
MY PTG+ ++ NF +VVA L + R
Sbjct: 1 MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK 60
Query: 48 ----RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQ 103
++E S FG + S+A +L G+++D +++ ++ ++EY+P + +
Sbjct: 61 AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120
Query: 104 ETFG----KSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEA 159
F + G + V + VDP GR + + +V R++ A E
Sbjct: 121 HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG 180
Query: 160 HKSHTIVYSICGIDCGFDNPIFAAIELDY------------SEADQDSTGQAASEAQKNL 207
+S + I + D + I+L + E +Q G+ A Q
Sbjct: 181 QRSSFLPSYIIDVR-ALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVR-QDTC 238
Query: 208 TFYELDLGLNHVSRK--W---SEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGH 262
+ + L + W S P D + V P G GV+V A N ++Y NQ
Sbjct: 239 SIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIG-----GVVVFAVNSLLYLNQSV 293
Query: 263 PDVRAVIPRRAD------LPAERGVLIVSAATHRQKTLFFF---LLQTEYGDIFKVTLEH 313
P + L + GV I Q T + ++ + G+I+ +TL
Sbjct: 294 PPYGVALNSLTTGTTAFPLRTQEGVRITLDCA--QATFISYDKMVISLKGGEIYVLTLIT 351
Query: 314 DNEHVSELKIKYFDTIP---VTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEA 368
D + ++ +FD +T SM ++ GYLF S GN L ++ +P A
Sbjct: 352 DG--MRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASA 407
Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 27/130 (20%)
Query: 420 QIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFD---------- 469
+I G G +L +L+ + + +LPG +WTV V E +
Sbjct: 499 EIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGC-YDMWTVIAPVRKEEEDNPKGEGTEQ 557
Query: 470 ---------------AYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDS- 513
++++S ++T++L G+ + E+ SGF P++ IGD+
Sbjct: 558 EPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRY 617
Query: 514 LMQVHPSGIR 523
++QV P GIR
Sbjct: 618 IVQVSPLGIR 627
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1
OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1
Length = 1455
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 162/430 (37%), Gaps = 56/430 (13%)
Query: 48 RIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFG 107
R+E L + ++G + SL L G+ +D +++ ++ +L+++P + F
Sbjct: 67 RLECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFE 126
Query: 108 KSGCRRIVPGQYLA----VDPKGRAVMIGACEKQKLVYVLNRDTAA-RLTISSPLEAHKS 162
+ R G+Y VDP R ++ K+ +V +D + + ++ K+
Sbjct: 127 EDDIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKA 186
Query: 163 HTIVYSICGIDCGF-------DNPIFAAIELDYSEADQDSTGQAASEAQKNL-------- 207
T + S I + D I +++ + + T E +
Sbjct: 187 PTAMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRS 246
Query: 208 -TFYELDLGLNHVSRK----W---SEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKN 259
T + + LN R W S P D + P GG LV N VIY N
Sbjct: 247 DTCVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGG-----CLVMTVNAVIYLN 301
Query: 260 QGHPDVRAVIPRRAD------LPAERGVLI-VSAATHRQKTLFFFLLQTEYGDIFKVTLE 312
Q P + AD L + GV I + A + ++ GD++ +TL
Sbjct: 302 QSVPPYGVSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGDLYVLTLC 361
Query: 313 HDN-EHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSS 371
D+ V +T+ +CVL S Y+F S GN L F E S
Sbjct: 362 VDSMRTVRNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHF--------TEEDQS 413
Query: 372 TLMETEEGFQPVFFQPRGL----KNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGR 427
T++ +E Q Q R L +NL I V+ L + E+E +++ G
Sbjct: 414 TVITLDEVEQQSEQQQRNLQDEDQNLEEIFDVDQLEMAPTQAKSRRIEDEELEVY---GS 470
Query: 428 GPRSSLRILR 437
G ++S+ LR
Sbjct: 471 GAKASVLQLR 480
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/472 (19%), Positives = 184/472 (38%), Gaps = 89/472 (18%)
Query: 774 LPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMEN 833
+PLR TPR+ V + ++ +I + +T R N
Sbjct: 1029 VPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYR------------------------FN 1064
Query: 834 GDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRS----ANTTCLLELQDNEAAFSICT 889
G+D+ + E++ YP + V ++ P + + + E ++ AF I
Sbjct: 1065 GEDKELSEESRGERFIYPIGSQFEMV----LISPETWEIVPDASITFEPWEHVTAFKIVK 1120
Query: 890 VNFHDKEHGT--LLAVGTAKGLQFWPKRNIVA-GYIHIYRFV----EEGKSLELLHKTQV 942
+++ G L +GT F +I + G IHIY + E GK + ++
Sbjct: 1121 LSYEGTRSGLKEYLCIGT----NFNYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKIKEI 1176
Query: 943 -----EGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKC--ENKLFPNTIVSINTYRD 995
+G A+ G L+ G+G + ++ L L+ + ++ + I+++ +
Sbjct: 1177 FKKEQKGPVSAISDVLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSL-- 1234
Query: 996 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRL 1055
I++ D+ +S +++ + L + + D P + I+F M G +
Sbjct: 1235 -IFIADVYKSISLLRFQEEYRTLSLASRDFNP---LEVYGIEF--MVDNSNLGFL----- 1283
Query: 1056 PQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSL-----------QKA 1104
V+D E + + + + K+ +H+G VV ++ Q+
Sbjct: 1284 ---VTD--AERNIIVYMYQPEARESLGGQKLLRKADYHLGQVVNTMFRVQCHQKGLHQRQ 1338
Query: 1105 SLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMR-QEHPPLCGRDHMAYRS- 1162
+ V+YGT+ G+LG L + F + + QEH LCG + YR+
Sbjct: 1339 PFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLSYQEH--LCGLNPKEYRTL 1396
Query: 1163 ------AYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEI 1208
P + +IDGDL + ++ + ++A ++ EIL L EI
Sbjct: 1397 KSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEI 1448
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 457 VWTV------KKNVNDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAVSLIG 510
VWTV K + ND+ D ++++S N+TLVL G+ + E+ ++GF P++ V +G
Sbjct: 563 VWTVFDDATKKSSRNDQHD-FMLLSQRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLG 621
Query: 511 DDS-LMQVHPSGIRHIREDGRINEWRTPGKRTI----VKVGSNRLQVVIA-------LSG 558
++QV RH+R G R I + VGS +QV IA +
Sbjct: 622 QQRFIVQV---TTRHVR--------LLQGTRLIQNVPIDVGSPVVQVSIADPYVCLRVLN 670
Query: 559 GELIYFEVDMT--GQLLEVEKHEMSGDVACLDIAS 591
G++I + T L + KH +S A + I++
Sbjct: 671 GQVITLALRETRGTPRLAINKHTISSSPAVVAISA 705
>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cft1 PE=3 SV=1
Length = 1441
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 465 NDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFLDTTPSLAV-SLIGDDSLMQVHPSGIR 523
N E + Y+V+S + + GET +EV S F + +L V SL+ ++Q+ P+ +R
Sbjct: 583 NPELETYLVLSKEKESFIFLAGETFDEVQHSDFSKDSKTLNVGSLLSGMRMVQICPTSLR 642
Query: 524 HIREDGRINEWRTPGKRTIVKVGS--NRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMS 581
+ R+ + K+ IV S + +V+ L GG +Y ++D+ Q L K ++
Sbjct: 643 VYDSNLRLTQLFNFSKKQIVVSTSICDPCIIVVFLGGGIALY-KMDLKSQRL--IKTDLQ 699
Query: 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIR 612
++ + AS+ + F + +Y+ T+
Sbjct: 700 NRLSDVKTASLVSPDSSALFAKLFTYNETLN 730
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 115/289 (39%), Gaps = 64/289 (22%)
Query: 836 DENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDK 895
D+N Y P+++ + ++ P + E Q E S+ VN
Sbjct: 1064 DDNDYLPMAN-------------TGSLDLVSPLTWTVIDSYEFQQFEIPLSVALVNLEVS 1110
Query: 896 EHGTLLAVGTAKGLQFWPKRNI-VAGYIHIYRFV---------EEGKSLELLHKTQVEGI 945
E L A G +I V G +++ + E L+L+ + +++G
Sbjct: 1111 ETTKLRKPYIAVGTSITKGEDIAVRGSTYLFEIIDVVPQPGRPETRHKLKLVTREEIKGT 1170
Query: 946 PLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENK--LFPNTIVSINTY-------RDR 996
+C+ G LL+G G+K ++R E++ L + + + +Y R+
Sbjct: 1171 VAVVCEVDGYLLSG---------QGQKVIVRALEDEDHLVGVSFIDLGSYTLSAKCLRNL 1221
Query: 997 IYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLP 1056
+ GD++++ F + + ++ +F+ ++AA DF N+YFV
Sbjct: 1222 LLFGDVRQNVTFVGFAEEPYRMTLFSKGQEALNVSAA---DFLVQG-----ENLYFV--- 1270
Query: 1057 QDVSDEIEEDPTGGKIK-WEQGKLNGAPNKMEEIV---QFHVGDVVTSL 1101
V+D T G ++ N + E +V FH+G+V+T++
Sbjct: 1271 --VAD------TSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAM 1311
>sp|Q6CTT2|CFT1_KLULA Protein CFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CFT1 PE=3
SV=1
Length = 1300
Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 10 QPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRL 69
QPT + ++GNF+ + E VVAR VL + R + ++ ++ G I +
Sbjct: 9 QPTVVNKCLHGNFTSAEREEYVVARTNVLSVFRVSRAQKLVLAYEWKLAGKIIDMQLLPQ 68
Query: 70 TGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI----HQETFGKSGCRRIVPGQYLAVDPK 125
GS + + S ++ ++ ++P + + + + F + +AVDP
Sbjct: 69 IGSPLKMLAILSSKSKVSLVRFDPVAESLETLSLHYYHDKFVNLSTSSLKTESIMAVDPL 128
Query: 126 GRAVMI 131
R +++
Sbjct: 129 FRCLLV 134
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
Length = 1387
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 152/404 (37%), Gaps = 98/404 (24%)
Query: 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFH----DKEHGTLLAVGTA--KGLQFWPK 914
CI++L PR+ + EL D E + T+N E +L VGTA +G P+
Sbjct: 1014 CIKLLSPRTWSVVDSYELGDAERVMCMKTINMEISEITHEMKDMLVVGTATVRGEDITPR 1073
Query: 915 RNIVAGYIHIYRFV---------EEGKSLELLHKTQVEGIPLALCQF--QGRLLAGIGPV 963
G I+++ + E + L++ K V+G A+ QG L+
Sbjct: 1074 -----GSIYVFEIIEVAPDPDRPETNRKLKIFAKDDVKGAVTAVSGIGGQGFLIMA---- 1124
Query: 964 LRLYDLGKKRLLR--KCENKLFPNTIVSINTYRDRI---------YVGDIQESFHFCKYR 1012
G+K ++R K + L P + + Y + +GD + F Y
Sbjct: 1125 -----QGQKCMVRGLKEDGSLLPVAFMDMQCYVKVLKELQGTGLCIMGDALKGIWFAGYS 1179
Query: 1013 RDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEI----EEDPT 1068
+ +L +F D+ + AA D + + +Y + D + + EDPT
Sbjct: 1180 EEPYRLTLFGKDNEYLQVIAA-----DFLPDGKR---LYILVADDDCTIHVLEYDPEDPT 1231
Query: 1069 GGKIKWEQGKLNGAPNKMEEIVQFHVG---DVVTSLQKASLVPGGGE------------- 1112
K +++ FH G +T L + S P +
Sbjct: 1232 SSK-----------GDRLLHRSSFHTGHFTSTMTLLPEHSSSPSADDPEEDDMDVDYVPK 1280
Query: 1113 --SVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHM--RQEHPPLCGRDHMAYR---SAYF 1165
V+ + GS+G + + D S L+ + EHP CG + AYR S F
Sbjct: 1281 SYQVLVTSQEGSIGVVTPL-TEDSYRRLSALQSQLVTSMEHP--CGLNPKAYRAVESDGF 1337
Query: 1166 PVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 1209
+ ++DG+L ++ L + +QRK G + +E IR
Sbjct: 1338 GGRGIVDGNLLLRW--LDMGVQRKA-----EIAGRVGADIESIR 1374
>sp|A1WAR4|RS6_ACISJ 30S ribosomal protein S6 OS=Acidovorax sp. (strain JS42) GN=rpsF PE=3
SV=1
Length = 125
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 936 LLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRD 995
L+H Q E +P L +++G ++AG G V R+ D G+++L NKL + +N D
Sbjct: 9 LIHPDQSEQVPAMLERYKGMIVAGGGQVHRVEDWGRRQLAYLI-NKLAKAHYLCLNIEAD 67
Query: 996 RIYVGDIQESFHF 1008
+ + +++ +F F
Sbjct: 68 QAVMAELEHAFKF 80
>sp|B9MDJ5|RS6_ACIET 30S ribosomal protein S6 OS=Acidovorax ebreus (strain TPSY) GN=rpsF
PE=3 SV=1
Length = 125
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 936 LLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRD 995
L+H Q E +P L +++G ++AG G V R+ D G+++L NKL + +N D
Sbjct: 9 LIHPDQSEQVPAMLERYKGMIVAGGGQVHRVEDWGRRQLAYLI-NKLAKAHYLCLNIEAD 67
Query: 996 RIYVGDIQESFHF 1008
+ + +++ +F F
Sbjct: 68 QAVMAELEHAFKF 80
>sp|Q6FSD2|CFT1_CANGA Protein CFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=CFT1 PE=3 SV=1
Length = 1361
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 11 PTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQF--- 67
PT + ++ G+F+ T E++V R VL + +P SGR+ + ++ G I +A
Sbjct: 10 PTVVSHSVCGHFTTTDYLELIVIRTDVLSIYKPIRSGRLYLMEEHKLSGRINDVALIPKH 69
Query: 68 ----RLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKI----HQETFGKSGCRRIVPGQY 119
G Y+++ + ++ +L YN + + I +++ F + +
Sbjct: 70 SNGSNGNGINLSYLLLSTGVAKLSLLMYNNMTSSIETISLHFYEDKFESATMLDLARNSQ 129
Query: 120 LAVDPKGRAVMI 131
L ++P G M+
Sbjct: 130 LRIEPNGNYAML 141
>sp|Q0V8F1|CORO7_BOVIN Coronin-7 OS=Bos taurus GN=CORO7 PE=2 SV=1
Length = 915
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 536 TPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEG 595
TPG+ R+ V + SGG++ E+ G+L + + VA D+A P
Sbjct: 488 TPGESDGFCANQLRVAVPLLSSGGQVAVLELRKPGRLPDTALPTLQNGVAVTDLAWDPFD 547
Query: 596 RKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLL 638
R LAV D IR+ + PD ++L++ PE++L
Sbjct: 548 PHR---LAVAGEDARIRLWRVPPDGLQEVLTM------PEAVL 581
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,781,965
Number of Sequences: 539616
Number of extensions: 20578085
Number of successful extensions: 49740
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 49257
Number of HSP's gapped (non-prelim): 160
length of query: 1213
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1084
effective length of database: 121,958,995
effective search space: 132203550580
effective search space used: 132203550580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)