Query 000944
Match_columns 1213
No_of_seqs 168 out of 717
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 02:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 4E-165 1E-169 1610.5 134.1 1092 1-1210 20-1156(1158)
2 1pgu_A Actin interacting prote 98.7 0.0011 3.7E-08 81.7 52.3 153 940-1126 443-610 (615)
3 1pgu_A Actin interacting prote 98.6 0.004 1.4E-07 76.5 57.0 172 861-1057 428-614 (615)
4 3sfz_A APAF-1, apoptotic pepti 98.5 0.0012 4.2E-08 89.1 50.1 381 549-1057 810-1207(1249)
5 3sfz_A APAF-1, apoptotic pepti 98.4 0.0042 1.4E-07 83.8 49.2 401 539-1057 615-1074(1249)
6 2ymu_A WD-40 repeat protein; u 98.3 0.019 6.5E-07 69.9 66.5 503 396-1053 50-576 (577)
7 3v7d_B Cell division control p 98.2 0.0029 1E-07 74.9 38.3 329 542-1010 125-459 (464)
8 2ymu_A WD-40 repeat protein; u 98.2 0.034 1.2E-06 67.7 65.1 506 396-1055 9-537 (577)
9 1nr0_A Actin interacting prote 98.0 0.048 1.7E-06 67.2 43.6 67 989-1057 455-522 (611)
10 4aow_A Guanine nucleotide-bind 98.0 0.0053 1.8E-07 68.9 31.2 285 582-971 39-337 (340)
11 3mkq_A Coatomer beta'-subunit; 97.9 0.041 1.4E-06 70.2 42.5 222 541-796 15-247 (814)
12 3gre_A Serine/threonine-protei 97.9 0.0033 1.1E-07 73.8 29.5 171 861-1054 237-437 (437)
13 1gxr_A ESG1, transducin-like e 97.9 0.0058 2E-07 68.3 30.1 125 861-1011 206-335 (337)
14 3odt_A Protein DOA1; ubiquitin 97.9 0.014 4.8E-07 64.4 32.2 278 581-977 18-302 (313)
15 1r5m_A SIR4-interacting protei 97.8 0.021 7.2E-07 66.0 34.2 172 861-1056 228-424 (425)
16 1nr0_A Actin interacting prote 97.8 0.15 5E-06 62.8 61.8 144 897-1055 459-609 (611)
17 2vdu_B TRNA (guanine-N(7)-)-me 97.8 0.049 1.7E-06 64.1 37.0 54 898-962 319-373 (450)
18 1gxr_A ESG1, transducin-like e 97.7 0.024 8.1E-07 63.2 30.0 207 861-1126 120-333 (337)
19 1sq9_A Antiviral protein SKI8; 97.7 0.13 4.4E-06 58.9 37.0 126 538-676 15-157 (397)
20 1ri6_A Putative isomerase YBHE 97.6 0.16 5.4E-06 56.5 37.2 105 919-1023 199-318 (343)
21 3mmy_A MRNA export factor; mRN 97.5 0.061 2.1E-06 60.6 31.5 230 539-796 39-292 (368)
22 1r5m_A SIR4-interacting protei 97.5 0.055 1.9E-06 62.4 31.6 111 541-675 47-179 (425)
23 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.12 4E-06 60.6 34.8 173 861-1057 260-442 (445)
24 1got_B GT-beta; complex (GTP-b 97.5 0.08 2.7E-06 59.6 32.1 275 582-968 56-340 (340)
25 4aez_A CDC20, WD repeat-contai 97.5 0.045 1.5E-06 63.3 30.5 217 544-796 98-322 (401)
26 1sq9_A Antiviral protein SKI8; 97.5 0.055 1.9E-06 62.0 31.1 138 754-971 206-395 (397)
27 3zwl_B Eukaryotic translation 97.5 0.09 3.1E-06 59.2 32.1 129 861-1013 198-346 (369)
28 3jrp_A Fusion protein of prote 97.5 0.064 2.2E-06 60.8 30.6 146 898-1057 69-240 (379)
29 3v7d_B Cell division control p 97.5 0.29 9.8E-06 57.5 37.3 166 861-1052 291-458 (464)
30 4e54_B DNA damage-binding prot 97.5 0.0016 5.3E-08 76.9 17.1 78 580-675 118-195 (435)
31 3mkq_A Coatomer beta'-subunit; 97.4 0.23 7.7E-06 63.2 38.5 275 581-970 13-301 (814)
32 3k26_A Polycomb protein EED; W 97.4 0.075 2.6E-06 59.8 30.4 219 861-1126 96-362 (366)
33 3mmy_A MRNA export factor; mRN 97.4 0.033 1.1E-06 62.8 27.3 171 861-1057 65-247 (368)
34 3ei3_B DNA damage-binding prot 97.4 0.025 8.4E-07 64.9 25.9 189 581-796 73-270 (383)
35 3zwl_B Eukaryotic translation 97.4 0.21 7.3E-06 56.0 33.6 291 540-930 33-347 (369)
36 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.4 1.4E-05 56.0 38.9 170 861-1057 220-391 (445)
37 3i2n_A WD repeat-containing pr 97.4 0.096 3.3E-06 58.7 29.9 179 861-1057 91-291 (357)
38 1yfq_A Cell cycle arrest prote 97.4 0.021 7.3E-07 63.9 24.2 183 582-796 12-213 (342)
39 4g56_B MGC81050 protein; prote 97.3 0.019 6.6E-07 65.4 22.5 90 861-971 250-343 (357)
40 3bws_A Protein LP49; two-domai 97.2 0.25 8.5E-06 57.3 32.7 299 570-970 111-431 (433)
41 4ery_A WD repeat-containing pr 97.2 0.17 5.9E-06 55.8 29.8 275 582-970 24-311 (312)
42 3k26_A Polycomb protein EED; W 97.2 0.2 7E-06 56.1 30.5 121 538-675 17-146 (366)
43 1ri6_A Putative isomerase YBHE 97.2 0.4 1.4E-05 53.2 32.4 105 551-675 6-114 (343)
44 3gre_A Serine/threonine-protei 97.2 0.18 6.1E-06 58.7 30.6 166 872-1057 156-359 (437)
45 3odt_A Protein DOA1; ubiquitin 97.2 0.36 1.2E-05 52.7 31.4 214 540-789 19-237 (313)
46 2pm9_A Protein WEB1, protein t 97.2 0.0012 4E-08 76.9 11.1 137 861-1013 189-337 (416)
47 3vl1_A 26S proteasome regulato 97.1 0.37 1.3E-05 55.4 32.6 179 861-1056 204-418 (420)
48 3vl1_A 26S proteasome regulato 97.1 0.45 1.5E-05 54.7 33.1 312 548-971 67-419 (420)
49 1k8k_C P40, ARP2/3 complex 41 97.1 0.49 1.7E-05 53.2 32.7 155 881-1057 142-361 (372)
50 1yfq_A Cell cycle arrest prote 97.1 0.15 5.2E-06 56.8 27.9 227 749-1057 26-282 (342)
51 3i2n_A WD repeat-containing pr 97.1 0.041 1.4E-06 61.9 23.0 177 860-1057 44-243 (357)
52 1k8k_C P40, ARP2/3 complex 41 97.1 0.53 1.8E-05 52.9 32.1 220 754-1057 29-274 (372)
53 1p22_A F-BOX/WD-repeat protein 97.0 0.046 1.6E-06 64.0 23.4 217 861-1129 194-412 (435)
54 2pbi_B Guanine nucleotide-bind 97.0 0.5 1.7E-05 53.3 30.9 280 582-968 65-354 (354)
55 3jro_A Fusion protein of prote 97.0 0.17 5.8E-06 64.0 29.3 178 861-1057 32-238 (753)
56 4aez_A CDC20, WD repeat-contai 97.0 0.51 1.8E-05 54.2 31.2 241 521-796 114-368 (401)
57 4gga_A P55CDC, cell division c 96.9 0.19 6.4E-06 58.4 27.5 91 861-971 302-395 (420)
58 2hes_X YDR267CP; beta-propelle 96.9 0.76 2.6E-05 51.2 34.1 147 898-1056 119-279 (330)
59 1got_B GT-beta; complex (GTP-b 96.9 0.41 1.4E-05 53.6 29.2 174 861-1057 78-257 (340)
60 1p22_A F-BOX/WD-repeat protein 96.9 0.15 5E-06 59.7 26.2 170 861-1057 154-325 (435)
61 2oaj_A Protein SNI1; WD40 repe 96.9 2 6.8E-05 55.3 48.6 108 541-675 19-128 (902)
62 3dm0_A Maltose-binding peripla 96.9 0.34 1.2E-05 60.5 30.8 189 582-796 383-580 (694)
63 2ynn_A Coatomer subunit beta'; 96.8 0.41 1.4E-05 52.6 27.9 172 861-1057 36-217 (304)
64 1vyh_C Platelet-activating fac 96.8 0.84 2.9E-05 52.7 31.6 96 898-1010 308-408 (410)
65 2oaj_A Protein SNI1; WD40 repe 96.8 2.2 7.6E-05 54.8 52.2 150 496-675 24-181 (902)
66 3lrv_A PRE-mRNA-splicing facto 96.8 0.16 5.4E-06 57.1 24.3 142 861-1020 150-299 (343)
67 4h5i_A Guanine nucleotide-exch 96.8 0.45 1.5E-05 54.0 28.1 296 576-971 9-343 (365)
68 2aq5_A Coronin-1A; WD40 repeat 96.8 0.16 5.5E-06 58.5 24.7 101 860-977 245-348 (402)
69 3ei3_B DNA damage-binding prot 96.7 0.69 2.4E-05 52.5 29.8 116 540-674 74-192 (383)
70 3frx_A Guanine nucleotide-bind 96.7 0.99 3.4E-05 49.9 33.2 281 582-970 18-316 (319)
71 2vdu_B TRNA (guanine-N(7)-)-me 96.7 1.2 3.9E-05 52.1 32.2 146 898-1057 210-391 (450)
72 3jrp_A Fusion protein of prote 96.7 0.24 8.1E-06 55.9 25.0 188 898-1127 23-237 (379)
73 3iz6_a 40S ribosomal protein R 96.7 0.23 8E-06 56.7 24.8 285 582-972 67-376 (380)
74 4ggc_A P55CDC, cell division c 96.6 0.5 1.7E-05 51.7 26.7 91 861-971 222-315 (318)
75 3fm0_A Protein CIAO1; WDR39,SG 96.6 1.3 4.5E-05 49.5 35.4 194 898-1127 117-332 (345)
76 3bws_A Protein LP49; two-domai 96.6 1.6 5.5E-05 50.2 32.4 220 754-1056 190-431 (433)
77 1vyh_C Platelet-activating fac 96.6 1.6 5.5E-05 50.2 33.2 111 540-675 109-222 (410)
78 3scy_A Hypothetical bacterial 96.5 1.5 5.1E-05 49.2 35.0 116 919-1037 232-361 (361)
79 4e54_B DNA damage-binding prot 96.5 0.11 3.6E-06 60.9 21.0 117 540-675 120-239 (435)
80 3f3f_A Nucleoporin SEH1; struc 96.5 1.4 5E-05 48.2 29.3 179 861-1057 34-249 (351)
81 2ynn_A Coatomer subunit beta'; 96.4 1.5 5.2E-05 47.9 31.4 90 861-971 209-302 (304)
82 2pm9_A Protein WEB1, protein t 96.4 0.036 1.2E-06 64.0 15.9 102 557-676 43-145 (416)
83 1erj_A Transcriptional repress 96.4 1.8 6.2E-05 49.4 30.2 140 898-1057 135-287 (393)
84 3ow8_A WD repeat-containing pr 96.4 1.7 5.8E-05 48.1 31.2 171 861-1057 103-279 (321)
85 2xyi_A Probable histone-bindin 96.3 0.22 7.5E-06 58.1 22.4 145 899-1057 195-353 (430)
86 1pby_B Quinohemoprotein amine 96.3 1.6 5.6E-05 47.9 28.7 148 754-976 10-168 (337)
87 4gqb_B Methylosome protein 50; 96.3 0.17 5.8E-06 57.2 20.4 212 861-1126 104-327 (344)
88 1l0q_A Surface layer protein; 96.3 2.1 7.2E-05 48.4 35.5 211 754-1056 11-232 (391)
89 4gqb_B Methylosome protein 50; 96.3 0.68 2.3E-05 52.1 25.1 174 861-1058 150-332 (344)
90 3vu4_A KMHSV2; beta-propeller 96.2 0.67 2.3E-05 52.3 25.1 166 920-1129 81-269 (355)
91 3fm0_A Protein CIAO1; WDR39,SG 96.2 0.83 2.8E-05 51.2 25.6 147 898-1056 28-180 (345)
92 2xyi_A Probable histone-bindin 96.1 0.18 6.1E-06 58.8 19.7 151 899-1057 68-263 (430)
93 3ow8_A WD repeat-containing pr 96.0 2.4 8.3E-05 46.8 34.6 170 861-1056 145-320 (321)
94 4aow_A Guanine nucleotide-bind 96.0 2.4 8.2E-05 46.6 29.2 131 861-1013 196-337 (340)
95 4gga_A P55CDC, cell division c 96.0 3.2 0.00011 47.8 31.6 268 549-929 116-395 (420)
96 3vu4_A KMHSV2; beta-propeller 96.0 2.8 9.5E-05 47.1 29.8 170 861-1058 82-272 (355)
97 4g56_B MGC81050 protein; prote 96.0 0.076 2.6E-06 60.4 15.4 214 861-1129 116-341 (357)
98 4a11_B DNA excision repair pro 95.9 0.31 1.1E-05 55.6 20.7 142 898-1057 112-276 (408)
99 1erj_A Transcriptional repress 95.9 0.97 3.3E-05 51.7 24.6 173 861-1056 146-340 (393)
100 2pm7_B Protein transport prote 95.9 2.4 8.3E-05 46.1 26.8 137 919-1057 76-238 (297)
101 4h5i_A Guanine nucleotide-exch 95.9 2.1 7.3E-05 48.3 27.0 175 861-1058 158-344 (365)
102 4ery_A WD repeat-containing pr 95.8 2.9 9.8E-05 45.6 30.8 221 541-796 67-298 (312)
103 4a11_B DNA excision repair pro 95.8 2 6.9E-05 48.6 26.7 101 898-1013 257-365 (408)
104 2pbi_B Guanine nucleotide-bind 95.8 3.4 0.00012 46.3 28.9 133 919-1057 175-315 (354)
105 3dwl_C Actin-related protein 2 95.6 1.1 3.6E-05 50.7 23.3 112 881-1012 146-280 (377)
106 3hfq_A Uncharacterized protein 95.6 3.7 0.00013 45.6 36.3 148 861-1024 163-328 (347)
107 3jro_A Fusion protein of prote 95.6 0.68 2.3E-05 58.4 23.4 144 898-1057 21-189 (753)
108 2xzm_R RACK1; ribosome, transl 95.6 3.8 0.00013 45.5 34.4 113 541-675 23-148 (343)
109 3dw8_B Serine/threonine-protei 95.5 1.4 4.9E-05 50.8 24.5 32 581-618 28-59 (447)
110 4ggc_A P55CDC, cell division c 95.5 3.5 0.00012 44.7 30.7 61 550-618 37-98 (318)
111 2aq5_A Coronin-1A; WD40 repeat 95.4 1.9 6.5E-05 49.2 24.6 176 861-1057 155-342 (402)
112 3dwl_C Actin-related protein 2 95.3 0.46 1.6E-05 53.8 18.8 76 581-676 11-86 (377)
113 3dm0_A Maltose-binding peripla 95.3 6.2 0.00021 48.9 30.5 267 294-617 395-692 (694)
114 3f3f_A Nucleoporin SEH1; struc 95.1 2.4 8.1E-05 46.4 23.6 155 882-1053 12-197 (351)
115 1l0q_A Surface layer protein; 95.1 5.7 0.0002 44.7 31.7 211 754-1057 53-275 (391)
116 2xzm_R RACK1; ribosome, transl 94.8 4.1 0.00014 45.3 24.6 172 861-1057 99-285 (343)
117 3bg1_A Protein SEC13 homolog; 94.3 2.8 9.6E-05 46.1 21.3 179 861-1057 36-247 (316)
118 1q7f_A NHL, brain tumor CG1071 94.2 4.3 0.00015 43.5 22.1 176 861-1057 101-280 (286)
119 1jmx_B Amine dehydrogenase; ox 94.1 7.6 0.00026 42.6 24.7 154 754-974 20-178 (349)
120 3scy_A Hypothetical bacterial 93.8 10 0.00035 42.1 37.3 125 537-682 208-343 (361)
121 3u4y_A Uncharacterized protein 93.8 9.4 0.00032 41.6 26.1 172 861-1056 21-206 (331)
122 2pm7_B Protein transport prote 93.7 4.8 0.00016 43.6 21.6 144 898-1057 21-189 (297)
123 3bg1_A Protein SEC13 homolog; 93.7 3.4 0.00012 45.4 20.5 144 898-1056 25-197 (316)
124 3lrv_A PRE-mRNA-splicing facto 93.4 8.9 0.0003 42.4 23.6 139 898-1057 48-201 (343)
125 3hfq_A Uncharacterized protein 93.2 12 0.00041 41.2 38.9 114 549-682 198-323 (347)
126 3dsm_A Uncharacterized protein 93.1 13 0.00043 41.0 26.9 144 861-1018 153-305 (328)
127 3iz6_a 40S ribosomal protein R 93.1 2.2 7.5E-05 48.4 18.0 178 861-1057 181-375 (380)
128 3dsm_A Uncharacterized protein 93.0 7.4 0.00025 43.0 22.0 132 861-1018 106-256 (328)
129 3vgz_A Uncharacterized protein 92.1 16 0.00055 40.0 27.7 208 771-1056 34-261 (353)
130 3frx_A Guanine nucleotide-bind 91.9 17 0.00057 39.7 36.6 223 540-796 18-256 (319)
131 3dw8_B Serine/threonine-protei 91.9 8.5 0.00029 44.1 21.4 161 879-1057 26-258 (447)
132 1nir_A Nitrite reductase; hemo 90.7 33 0.0011 40.9 36.1 331 599-1026 149-525 (543)
133 2hes_X YDR267CP; beta-propelle 90.7 22 0.00076 38.9 32.5 116 540-675 15-137 (330)
134 3vgz_A Uncharacterized protein 90.2 24 0.00082 38.5 32.0 205 769-1056 80-302 (353)
135 2iwa_A Glutamine cyclotransfer 89.7 24 0.0008 37.7 22.0 135 860-1017 44-183 (266)
136 2j04_A TAU60, YPL007P, hypothe 89.6 19 0.00065 42.9 21.0 144 896-1056 139-296 (588)
137 1jmx_B Amine dehydrogenase; ox 89.4 27 0.00094 37.9 22.9 60 549-617 10-73 (349)
138 3u4y_A Uncharacterized protein 88.7 29 0.001 37.5 30.5 141 755-975 150-308 (331)
139 3mbr_X Glutamine cyclotransfer 87.9 20 0.00067 37.7 17.7 136 859-1017 42-181 (243)
140 3no2_A Uncharacterized protein 86.9 35 0.0012 36.4 25.9 174 861-1057 57-251 (276)
141 1jof_A Carboxy-CIS,CIS-muconat 86.6 43 0.0015 37.1 37.4 57 559-622 14-73 (365)
142 2vpj_A Kelch-like protein 12; 86.0 23 0.0008 38.0 18.2 137 898-1044 113-260 (301)
143 3nol_A Glutamine cyclotransfer 84.9 43 0.0015 35.5 19.6 137 859-1018 64-204 (262)
144 2j04_B YDR362CP, TAU91; beta p 84.4 14 0.00047 44.0 16.3 141 899-1056 278-427 (524)
145 2ojh_A Uncharacterized protein 84.4 15 0.00053 38.6 15.6 173 859-1057 21-204 (297)
146 1nir_A Nitrite reductase; hemo 83.0 83 0.0028 37.3 31.9 181 754-1013 199-402 (543)
147 1xip_A Nucleoporin NUP159; bet 82.9 17 0.00058 41.2 15.4 101 948-1057 44-155 (388)
148 3ei3_A DNA damage-binding prot 82.4 1.3E+02 0.0046 39.2 68.6 155 939-1127 824-996 (1158)
149 3q7m_A Lipoprotein YFGL, BAMB; 81.7 69 0.0024 35.5 22.7 169 861-1056 154-336 (376)
150 3ii7_A Kelch-like protein 7; p 79.8 58 0.002 34.9 18.3 167 860-1043 70-253 (306)
151 2xn4_A Kelch-like protein 2; s 78.2 61 0.0021 34.7 17.8 137 898-1044 109-258 (302)
152 4asc_A Kelch repeat and BTB do 77.8 57 0.002 35.2 17.5 142 898-1043 46-202 (315)
153 1pby_B Quinohemoprotein amine 76.7 84 0.0029 33.5 28.0 85 921-1009 220-306 (337)
154 2j04_A TAU60, YPL007P, hypothe 76.3 25 0.00086 41.9 14.3 53 920-974 202-257 (588)
155 3hxj_A Pyrrolo-quinoline quino 75.3 78 0.0027 33.9 17.8 160 861-1054 118-281 (330)
156 2xn4_A Kelch-like protein 2; s 75.2 73 0.0025 34.0 17.3 134 898-1043 62-210 (302)
157 2vpj_A Kelch-like protein 12; 74.7 43 0.0015 35.8 15.3 159 860-1036 128-299 (301)
158 4asc_A Kelch repeat and BTB do 74.2 51 0.0018 35.6 15.8 138 898-1042 99-248 (315)
159 3nok_A Glutaminyl cyclase; bet 73.9 95 0.0033 32.8 19.6 133 861-1017 76-212 (268)
160 2j04_B YDR362CP, TAU91; beta p 73.5 1.5E+02 0.0051 34.9 22.3 156 899-1056 155-341 (524)
161 1jof_A Carboxy-CIS,CIS-muconat 72.7 1.2E+02 0.004 33.4 37.1 159 861-1037 168-365 (365)
162 3no2_A Uncharacterized protein 72.6 51 0.0017 35.1 14.9 130 919-1054 14-152 (276)
163 4a2l_A BT_4663, two-component 72.0 1.1E+02 0.0039 38.0 20.3 104 946-1054 133-241 (795)
164 1zgk_A Kelch-like ECH-associat 71.5 45 0.0015 35.9 14.4 140 898-1043 71-221 (308)
165 2z2n_A Virginiamycin B lyase; 68.8 1.2E+02 0.004 31.7 30.1 127 920-1055 162-293 (299)
166 3mbr_X Glutamine cyclotransfer 68.6 1.2E+02 0.004 31.7 16.9 115 934-1054 9-130 (243)
167 2hqs_A Protein TOLB; TOLB, PAL 68.6 1.6E+02 0.0054 33.2 25.0 170 861-1056 204-386 (415)
168 3sjl_D Methylamine dehydrogena 68.5 1.6E+02 0.0054 33.1 23.4 37 758-795 312-349 (386)
169 3nol_A Glutamine cyclotransfer 68.2 1.2E+02 0.0043 31.9 16.6 115 934-1054 31-152 (262)
170 2ece_A 462AA long hypothetical 66.8 1.8E+02 0.0063 33.3 19.2 37 584-626 323-360 (462)
171 1qks_A Cytochrome CD1 nitrite 66.7 2.1E+02 0.0072 33.9 33.6 174 600-796 167-360 (567)
172 3g4e_A Regucalcin; six bladed 66.6 72 0.0025 34.0 14.7 130 919-1056 34-179 (297)
173 2woz_A Kelch repeat and BTB do 66.1 1.5E+02 0.005 31.9 17.5 138 898-1043 110-259 (318)
174 1zgk_A Kelch-like ECH-associat 65.6 68 0.0023 34.5 14.3 136 898-1043 122-268 (308)
175 2woz_A Kelch repeat and BTB do 65.4 75 0.0026 34.3 14.7 141 898-1042 57-211 (318)
176 3ii7_A Kelch-like protein 7; p 62.7 1E+02 0.0035 32.9 15.0 135 898-1043 56-206 (306)
177 4gq1_A NUP37; propeller, trans 62.6 1.9E+02 0.0066 32.1 25.3 105 555-675 107-217 (393)
178 2oit_A Nucleoporin 214KDA; NH2 60.2 35 0.0012 39.3 11.0 74 581-675 149-222 (434)
179 2qc5_A Streptogramin B lactona 50.9 2.3E+02 0.0078 29.3 23.1 129 919-1054 82-215 (300)
180 3nok_A Glutaminyl cyclase; bet 50.9 2.5E+02 0.0084 29.7 15.3 113 935-1054 44-161 (268)
181 2uvk_A YJHT; unknown function, 50.3 1.4E+02 0.0047 32.7 13.7 140 898-1042 66-257 (357)
182 1qks_A Cytochrome CD1 nitrite 49.5 3.9E+02 0.013 31.6 30.5 80 550-639 167-247 (567)
183 2ghs_A AGR_C_1268P; regucalcin 49.2 2.8E+02 0.0095 29.8 16.6 139 897-1056 60-209 (326)
184 2dg1_A DRP35, lactonase; beta 49.1 1.7E+02 0.006 31.2 14.2 133 919-1056 65-212 (333)
185 3e5z_A Putative gluconolactona 45.9 2.8E+02 0.0096 28.9 23.0 34 1092-1129 252-285 (296)
186 2hqs_A Protein TOLB; TOLB, PAL 45.7 2E+02 0.0069 32.3 14.4 129 919-1056 158-299 (415)
187 2w18_A PALB2, fancn, partner a 44.6 3.6E+02 0.012 29.7 22.6 178 860-1056 157-356 (356)
188 4gq1_A NUP37; propeller, trans 44.2 3.6E+02 0.012 29.7 20.6 93 962-1057 111-218 (393)
189 3ott_A Two-component system se 42.5 5.5E+02 0.019 31.3 19.4 73 944-1021 63-136 (758)
190 3m0c_C LDL receptor, low-densi 42.4 2.4E+02 0.0084 35.0 15.2 130 919-1054 492-629 (791)
191 2oit_A Nucleoporin 214KDA; NH2 40.3 2.2E+02 0.0077 32.2 13.7 113 941-1056 90-222 (434)
192 1rwi_B Serine/threonine-protei 38.9 3.3E+02 0.011 27.7 20.1 225 746-1057 33-264 (270)
193 3sov_A LRP-6, low-density lipo 38.4 4E+02 0.014 28.6 14.9 130 919-1054 100-235 (318)
194 2ojh_A Uncharacterized protein 38.3 3.3E+02 0.011 27.6 25.5 115 542-679 44-163 (297)
195 3v65_B Low-density lipoprotein 37.8 4.5E+02 0.016 29.0 17.2 134 919-1056 137-276 (386)
196 3e5z_A Putative gluconolactona 36.7 1.5E+02 0.0053 31.1 10.9 91 919-1018 192-289 (296)
197 3dr2_A Exported gluconolactona 35.9 3.9E+02 0.013 28.1 14.1 48 963-1012 170-223 (305)
198 3sjl_D Methylamine dehydrogena 34.8 5.2E+02 0.018 28.8 29.9 96 533-640 276-382 (386)
199 2dg1_A DRP35, lactonase; beta 33.9 4.4E+02 0.015 27.7 21.0 139 861-1018 67-218 (333)
200 1dul_A Signal recognition part 33.8 50 0.0017 26.9 4.5 27 1184-1210 35-61 (69)
201 2iwa_A Glutamine cyclotransfer 32.3 4.6E+02 0.016 27.5 17.3 116 933-1054 8-132 (266)
202 3ott_A Two-component system se 31.9 7.7E+02 0.026 29.9 20.7 75 944-1021 103-180 (758)
203 3v65_B Low-density lipoprotein 31.7 4.2E+02 0.014 29.3 13.9 97 949-1049 209-309 (386)
204 3v64_C Agrin; beta propeller, 31.5 5.3E+02 0.018 27.9 17.0 107 948-1056 122-233 (349)
205 4a2l_A BT_4663, two-component 31.5 8E+02 0.027 30.0 46.8 136 861-1022 428-578 (795)
206 1npe_A Nidogen, entactin; glyc 31.2 4.4E+02 0.015 26.9 26.2 128 919-1054 100-235 (267)
207 1xip_A Nucleoporin NUP159; bet 30.2 6.1E+02 0.021 28.2 15.2 105 939-1055 84-189 (388)
208 1npe_A Nidogen, entactin; glyc 29.1 4.8E+02 0.016 26.6 15.0 130 919-1055 57-196 (267)
209 1q7f_A NHL, brain tumor CG1071 27.9 5.1E+02 0.017 26.5 28.7 131 919-1054 99-235 (286)
210 2z3z_A Dipeptidyl aminopeptida 27.6 8.4E+02 0.029 29.0 17.2 179 920-1127 101-339 (706)
211 3q7m_A Lipoprotein YFGL, BAMB; 27.2 6.2E+02 0.021 27.3 32.1 124 520-673 249-375 (376)
212 3v64_C Agrin; beta propeller, 27.1 4.7E+02 0.016 28.4 13.0 102 949-1054 166-272 (349)
213 2uvk_A YJHT; unknown function, 26.5 4E+02 0.014 28.8 12.4 137 921-1057 32-226 (357)
214 2p4o_A Hypothetical protein; p 26.4 5.8E+02 0.02 26.7 16.2 119 934-1056 22-146 (306)
215 2z2n_A Virginiamycin B lyase; 25.4 5.5E+02 0.019 26.1 30.0 129 919-1054 119-252 (299)
216 1ijq_A LDL receptor, low-densi 24.2 6.6E+02 0.023 26.6 24.6 130 919-1054 98-235 (316)
217 2ece_A 462AA long hypothetical 23.8 8.5E+02 0.029 27.8 21.5 143 859-1011 227-421 (462)
218 3fvz_A Peptidyl-glycine alpha- 23.2 6.8E+02 0.023 26.4 23.2 153 860-1033 69-246 (329)
219 3sov_A LRP-6, low-density lipo 22.7 7.2E+02 0.024 26.5 17.0 108 947-1057 84-197 (318)
220 2ad6_A Methanol dehydrogenase 22.7 9.7E+02 0.033 28.0 16.2 24 858-881 270-293 (571)
221 3hrp_A Uncharacterized protein 22.6 3.2E+02 0.011 30.6 10.7 102 953-1056 141-248 (409)
222 2xvc_A ESCRT-III, SSO0910; cel 22.5 80 0.0027 24.5 3.5 24 1188-1211 29-52 (59)
223 1hq1_A Signal recognition part 21.5 94 0.0032 27.7 4.4 27 1184-1210 69-95 (105)
224 3fvz_A Peptidyl-glycine alpha- 21.1 7.5E+02 0.026 26.1 18.8 90 963-1054 70-172 (329)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=4e-165 Score=1610.51 Aligned_cols=1092 Identities=24% Similarity=0.397 Sum_probs=948.8
Q ss_pred CeEEEEEeeCCCceeEEEEEEecCCCCceEEEEeCCEEEEEeecCCCCeEEEEEEEeeeeeeEeeEEeeCCCCeeEEEEE
Q 000944 1 MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGAIRSLAQFRLTGSQKDYIVVG 80 (1213)
Q Consensus 1 m~~y~~t~~~pt~v~~~v~~~f~~~~~~~LVv~k~~~Levy~i~~~g~L~~v~~~~l~g~I~~i~~~r~~~~~~d~L~v~ 80 (1213)
||+|+.|+++||+|+||+.|||++++..+||++|+|+||||+++++| |+++.++++||+|++++++|++++.+|+|+|+
T Consensus 20 ~~~Y~~t~~~pT~V~~av~g~F~~~~~~~Lvvak~~~Lel~~~~~~~-L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~ 98 (1158)
T 3ei3_A 20 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG-LRPVKEVGMYGKIAVMELFRPKGESKDLLFIL 98 (1158)
T ss_dssp CCEEEEEEECCCSCCEEEEECSSCSSCCEEEEEETTEEEEEEEETTE-EEEEEEEECSSCEEEEEEECCTTCSSCEEEEE
T ss_pred cEEEEEEeeCCChhhEEEEEEcCCCCccEEEEecCCEEEEEEEcccc-eEEEEEEEcccEEEEEEEEcCCCCCceEEEEE
Confidence 68999999999999999999999999999999999999999999885 99999999999999999999999999999999
Q ss_pred eccceEEEEEEeCCCCcE--eEEeeeeccccCcccccCCceEEECCCCCEEEEEecccceEEEEEecCCCCceee-eccc
Q 000944 81 SDSGRIVILEYNPSKNVF--DKIHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTAARLTI-SSPL 157 (1213)
Q Consensus 81 ~~~~~l~il~~d~~~~~~--~tis~~~~~~~g~~~~~~~~~l~VDP~~r~ia~~~~~~~~~v~~~~~~~~~~~~~-~~p~ 157 (1213)
|+++|+++++||++.+.+ .+.+.+.++.+..++..+|++++|||.|||+++++|++.++|+|++++.. +++. ..++
T Consensus 99 td~~~~~il~~d~~~~~~~~~t~~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~-~l~~~~~~l 177 (1158)
T 3ei3_A 99 TAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNK-ELKAFNIRL 177 (1158)
T ss_dssp ETTCEEEEEEEEC-CCCCEEEEEEEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCT-TCCCEEEEC
T ss_pred eCCceEEEEEEcCCCCceeEEEEeccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCcc-ccccccccc
Confidence 999999999999986654 44455556544446677899999999999999999999999999987543 2321 1122
Q ss_pred cccccccEEEEeeeeccCCCCcEEEEEEeeccccccCcchhccccccceEEEEEEEcCCceeeee-ee-eccCCCcceEE
Q 000944 158 EAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRK-WS-EPVDNGANMLV 235 (1213)
Q Consensus 158 e~~~~~~~i~~~~fl~~~~~~p~~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~lp~~~~~li 235 (1213)
...+|.||+||+ ||++|++|+||++. + .+++++|++|++++.+.+. |+ .+||+++++||
T Consensus 178 ----~~~~v~d~~fL~-g~~~P~~A~Ly~d~-------~-------~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~Li 238 (1158)
T 3ei3_A 178 ----EELHVIDVKFLY-GCQAPTICFVYQDP-------Q-------GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVI 238 (1158)
T ss_dssp ----SCCCEEEEEECS-SCSSCEEEEEEEET-------T-------EEEEEEEEEETTTTEEEECSSCCEEECTTCCEEE
T ss_pred ----ccceEEEEEEec-CCCCcEEEEEEECC-------C-------CCEEEEEEEEcCCCeeeecccccccCCCCCCEEE
Confidence 235799999998 99999999995431 1 3689999999998766553 86 68999999999
Q ss_pred ecCCCCCCCCeEEEEeeceEEEEeCCCCceeeecCCCCCCCCCcceEEEEEEEEEecCceEEEEEeCCCCEEEEEEEeCC
Q 000944 236 TVPGGGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQTEYGDIFKVTLEHDN 315 (1213)
Q Consensus 236 plp~~~~~~~GvLv~~~~~i~y~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~ll~~~~G~l~~l~l~~~~ 315 (1213)
|||+|+ ||+||+|+|.|+|+++++.. .+..|.+ ++..|+||+.++. +..++||++++|+||+|+|..|+
T Consensus 239 pVP~~~---gGvlv~g~n~i~y~~~~~~~-~~~~p~~------~~~~i~~~~~~~~-~~~~~LL~~~~G~l~~l~l~~d~ 307 (1158)
T 3ei3_A 239 AVPEPF---GGAIIIGQESITYHNGDKYL-AIAPPII------KQSTIVCHNRVDP-NGSRYLLGDMEGRLFMLLLEKEE 307 (1158)
T ss_dssp ECCTTT---CCEEEECSSCEEEEETTEEE-EECCGGG------GGSCEEEEEECST-TSSEEEEEETTCEEEEEEEEEEC
T ss_pred ECCCCC---ceEEEEECCEEEEEcCCCce-EEecccc------CCceEEEEEEEec-CCCEEEEEeCCCCEEEEEEEEcC
Confidence 999998 99999999999999987642 2333432 2456789998743 45799999999999999999987
Q ss_pred c-----eeeeeEEEEeCCCCcceeEEEEcCCeEEEEeeeCCeEEEEEeecCCCCCcccccCCccccccCCCceeeccCCc
Q 000944 316 E-----HVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAIGADPDVEASSSTLMETEEGFQPVFFQPRGL 390 (1213)
Q Consensus 316 ~-----~v~~l~i~~l~~~~~~s~l~~l~~~~lFvgS~~gds~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1213)
+ .|++++++++|++++|+||+++++|+||+||++|||+||++...+.+++
T Consensus 308 ~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~------------------------- 362 (1158)
T 3ei3_A 308 QMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQG------------------------- 362 (1158)
T ss_dssp -----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTS-------------------------
T ss_pred CccCceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCcc-------------------------
Confidence 5 6899999999999999999999999999999999999999987553210
Q ss_pred ccEEEEEEeccCCcccceEEeccCCCCCCcEEEEEecCCCCeEEEEccCCcceEEEEecCCCCcceEEEeeeCCCCCCce
Q 000944 391 KNLVRIEQVESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDA 470 (1213)
Q Consensus 391 ~~l~~~d~~~n~gPI~D~~~~~~~~~~~~~lv~~sG~g~~GsL~~lr~gi~~~~~~~~~l~~~~~~iw~l~~~~~~~~~~ 470 (1213)
.+++++++++|||||.||++++...+++++|++|||+|++|+|+++|+|+++++++++++|++ +++|+++....+++|.
T Consensus 363 ~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv-~~iWtl~~~~~~~~~~ 441 (1158)
T 3ei3_A 363 SYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNRETDD 441 (1158)
T ss_dssp CCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSC-CEEEEECCCSSCSSCC
T ss_pred ceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCc-cEEEEEeecCCCCCCC
Confidence 257899999999999999999987678899999999999999999999999999999999996 9999999766678899
Q ss_pred EEEEEecCceeEEEe-ccceeeecCCCccCCCCeEEEEeecCCeEEEEeCCcEEEEeCC--CceeeeeCCCCccEEEEEe
Q 000944 471 YIVVSFNNATLVLSI-GETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIRED--GRINEWRTPGKRTIVKVGS 547 (1213)
Q Consensus 471 ~lvlS~~~~T~vl~~-~~~~~e~~~~gf~~~~~Tl~a~~~~~~~ivQVT~~~i~l~~~~--~~~~~~~~~~~~~I~~as~ 547 (1213)
||++|++++|+||++ +++++|++++||.++++||+|++++++.+||||+++||+++.+ ..+++|++|.|.+|++|++
T Consensus 442 yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~ 521 (1158)
T 3ei3_A 442 TLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASC 521 (1158)
T ss_dssp EEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEE
T ss_pred EEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEe
Confidence 999999999999999 7899999999999999999999999899999999999999975 4899999999999999999
Q ss_pred cCCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEe-CCcEEEEEeCCCCceeEeE
Q 000944 548 NRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILS 626 (1213)
Q Consensus 548 ~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~-~~~i~i~sl~p~~~l~~~~ 626 (1213)
++++|+++ +++++++|++++ +++.++.+.+++.+|+|+++.+.+++...+.+++||+| |++++|++| |+ ++.++
T Consensus 522 n~~~vvva-~g~~l~~fel~~-~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL-~~--l~~~~ 596 (1158)
T 3ei3_A 522 NSSQVVVA-VGRALYYLQIHP-QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PS--FELLH 596 (1158)
T ss_dssp CSSEEEEE-ETTEEEEEEEET-TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET-TT--CCEEE
T ss_pred CCCEEEEE-ECCEEEEEEeeC-CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC-CC--CCeEE
Confidence 99999999 588999999985 67888888999999999999988776677899999999 999999999 54 88888
Q ss_pred EeecCC--CCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCe
Q 000944 627 VQSVSS--PPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGR 704 (1213)
Q Consensus 627 ~~~l~~--~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~ 704 (1213)
.+.|+. .|+|+++.+++ +.+||++|++||.+++|.++..+|++.+.+.+++|++|++|++++..+.
T Consensus 597 ~~~L~~~~~p~si~l~~~~------------~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~ 664 (1158)
T 3ei3_A 597 KEMLGGEIIPRSILMTTFE------------SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLST 664 (1158)
T ss_dssp EEECCSSCCEEEEEEEEET------------TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSC
T ss_pred EEECCCCCCCcEEEEEEeC------------CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCc
Confidence 888854 79999998874 4699999999999999999998999999999999999999999987778
Q ss_pred eEEEEecCccEEEEEeCCeEEEEecCccccceeeccccCCCCceEEEEeCCeEEEEEEccCCCeeEEEEEeCCCccceee
Q 000944 705 AAMLCLSSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTPRRFV 784 (1213)
Q Consensus 705 ~~v~~~g~~p~~i~~~~~~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~ 784 (1213)
.+||++|++||++|.+++++.++|++.+++.++|+|+++.|++|++++++++|+|++++++ ++|++|+|||++|||||+
T Consensus 665 ~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~-~~~~~~~ipL~~Tprri~ 743 (1158)
T 3ei3_A 665 TNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEI-QKLHIRTVPLYESPRKIC 743 (1158)
T ss_dssp EEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCS-SSEEEEEEECSSEEEEEE
T ss_pred eeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEeccc-CCeeEEEEeCCCCceEEE
Confidence 8999999999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred ecCCCceEEEEEccCCCCCHHHH-----HHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCcee
Q 000944 785 LQPKKKLMVIIETDQGALTAEER-----EAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWV 859 (1213)
Q Consensus 785 y~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 859 (1213)
|||++++|+|++++.+.++++.+ ...... ..++.+ .+++.. .+....+++.++.| .|+
T Consensus 744 y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~----~~~~~~~~~~~g~~-----~~~ 806 (1158)
T 3ei3_A 744 YQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQ----ALSSSV----SSSKLF----SSSTAPHETSFGEE-----VEV 806 (1158)
T ss_dssp EEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHH----CSEEEE----CCCCCC--------------CCCE-----EEE
T ss_pred EcCCCCEEEEEEEeccccccccccchhhhhhhhh----hhhhcc----cccccc----cccccCchhhcCCc-----eee
Confidence 99999999999986543221100 000000 000000 000000 00001122334433 578
Q ss_pred eEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 860 s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
|+++++||.+|+++++++|+++|.++|++.++|.+ ++++|++|||++..+ +|+.+++|||++|++.+ +||+++|+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~-~~~~~lvVGTa~~~~--~e~~~~~Gri~vf~v~~--~kL~lv~~ 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK-DPNTYFIVGTAMVYP--EEAEPKQGRIVVFQYSD--GKLQTVAE 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT-CCCCEEEEEEEECCT--TCSSCCCEEEEEEEEET--TEEEEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc-CCCEEEEEEeeecCC--CCCCCCceEEEEEEEEC--CEEEEEEE
Confidence 99999999999999999999999999999999975 457999999999987 58999999999999994 49999999
Q ss_pred EeecCcceEeccccCeEEEEeCCeEEEEecCCceeeceeeecCcc-ceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 940 TQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFP-NTIVSINTYRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 940 ~~~~g~V~ai~~~~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~-~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
++++|+|+|||+|+|+|++|+|++|++|+|+++++++ +....++ ..+++|++.+|+|+|||+|+|+++++|++++++|
T Consensus 882 ~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L 960 (1158)
T 3ei3_A 882 KEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF 960 (1158)
T ss_dssp EEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred EEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE
Confidence 9999999999999999999999999999999776544 2221122 2367899999999999999999999999999999
Q ss_pred EEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeecCcee
Q 000944 1019 YIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVV 1098 (1213)
Q Consensus 1019 ~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~lg~~v 1098 (1213)
+++|||+.++|++++++||+++++++|++|||++++++++..++ ..+++|+.+++||+|+.|
T Consensus 961 ~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~------------------~~~~~L~~~~~fhlG~~v 1022 (1158)
T 3ei3_A 961 EEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTD------------------EERQHLQEVGLFHLGEFV 1022 (1158)
T ss_dssp EEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCST------------------TGGGBEEEEEEEECSSCE
T ss_pred EEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCc------------------cccceeeeEEEEeCCCcE
Confidence 99999999999999999999999999999999999999965432 126899999999999999
Q ss_pred ceEEEeeecCCC--------ccEEEEEecccceEEEEecCChhHHHHHHHHHHHHHhcCCCCcCCCccccccccC-----
Q 000944 1099 TSLQKASLVPGG--------GESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYF----- 1165 (1213)
Q Consensus 1099 ~~~~~~~~~~~~--------~~~i~~~t~~Gsig~l~~l~~~~~~~~L~~lq~~l~~~~~~~~gl~~~~~R~~~~----- 1165 (1213)
|+|+++++.++. .+.++|+|.+|+||.++|+ ++++|++|..||++|++..+++||++|++||++++
T Consensus 1023 t~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl-~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~~ 1101 (1158)
T 3ei3_A 1023 NVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL-SESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1101 (1158)
T ss_dssp EEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE-CHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCEE
T ss_pred eeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc-CHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeecccccC
Confidence 999998887654 6789999999999999999 78999999999999999999999999999999987
Q ss_pred CCCceeechhhhhcccCCHHHHHHHHHHcC----------CCHHHHHHHHHHHHh
Q 000944 1166 PVKDVIDGDLCEQFPTLSLDLQRKIADELD----------RTPGEILKKLEEIRN 1210 (1213)
Q Consensus 1166 p~~~~iDGdll~~fl~l~~~~q~~i~~~~~----------~~~~~i~~~l~~l~~ 1210 (1213)
|+++||||||||+|++|+.++|++||++++ +|++||.+.||+|++
T Consensus 1102 ~~~~~iDGdLle~fl~L~~~~q~~ia~~l~~~~~~~~~~~~t~~ei~k~~e~l~r 1156 (1158)
T 3ei3_A 1102 PATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTR 1156 (1158)
T ss_dssp CCBSEEEHHHHHGGGGSCHHHHHHHCCCC------------CCHHHHHHHHHHGG
T ss_pred CCCccCcHHHHHHHHcCCHHHHHHHHHhhCccccccccCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999999996 599999999999985
No 2
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.69 E-value=0.0011 Score=81.71 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=98.8
Q ss_pred EeecCcceEeccccCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccC
Q 000944 940 TQVEGIPLALCQFQGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDE 1015 (1213)
Q Consensus 940 ~~~~g~V~ai~~~~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~ 1015 (1213)
....+++.+++--+.+|+++. ...|++|++...++.. ..+......++++.. .++++++|+.-..+.++.. ..
T Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~--~~ 519 (615)
T 1pgu_A 443 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL--QS 519 (615)
T ss_dssp EECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TT
T ss_pred cccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC--CC
Confidence 346788888877755666666 4689999999876643 223323456777765 6789999999888888544 34
Q ss_pred CeEEEeeccCCCcceEEEEeec-----------CCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCccc
Q 000944 1016 NQLYIFADDSVPRWLTAAHHID-----------FDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPN 1084 (1213)
Q Consensus 1016 ~~l~~~a~D~~~~~~~~~~~ld-----------~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1213)
.+....-...+...++++.+-. ...++.++.+|.|.+++.....
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------- 574 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------------------------- 574 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-------------------------
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-------------------------
Confidence 4444333332566788887754 4467888999999999885421
Q ss_pred ceeeeeeeecCceeceEEEeeecCCCccEEEEEecccceEEE
Q 000944 1085 KMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAM 1126 (1213)
Q Consensus 1085 ~L~~~~~~~lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l 1126 (1213)
++.....-| .+.|+++.- .+.+. ++.++.+|.|...
T Consensus 575 ~~~~~~~~h-~~~v~~l~~---s~~~~--l~s~~~d~~v~iw 610 (615)
T 1pgu_A 575 KIIKALNAH-KDGVNNLLW---ETPST--LVSSGADACIKRW 610 (615)
T ss_dssp CCEEETTSS-TTCEEEEEE---EETTE--EEEEETTSCEEEE
T ss_pred eechhhhcC-ccceEEEEE---cCCCC--eEEecCCceEEEE
Confidence 111111222 345665543 33343 8889999998744
No 3
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.61 E-value=0.004 Score=76.53 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=109.2
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+.+++..+++.+..+.. ...+.++.. . .+++++|+. ..|.|.+|++... ++......
T Consensus 428 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~----~~~l~~~~~-----------~d~~i~~~~~~~~--~~~~~~~~ 485 (615)
T 1pgu_A 428 DLLILQSFTGDIIKSVRL--NSPGSAVSL---S----QNYVAVGLE-----------EGNTIQVFKLSDL--EVSFDLKT 485 (615)
T ss_dssp EEEEEETTTCCEEEEEEC--SSCEEEEEE---C----SSEEEEEET-----------TTSCEEEEETTEE--EEEEECSS
T ss_pred ceEEEeccCCceeeeccc--CCCceEEEE---c----CCEEEEeec-----------CCCeEEEEECCCc--cccccccC
Confidence 567777666776666553 344555443 2 457887763 0367889988754 33322223
Q ss_pred eecCcceEeccc-cCeE-EEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE------------eCCEEEEeecCCc
Q 000944 941 QVEGIPLALCQF-QGRL-LAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT------------YRDRIYVGDIQES 1005 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~l-l~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~------------~~~~I~vgD~~~S 1005 (1213)
...++|++++-- +|.+ +++. ...|++|++...+........ +...++++.. .++++++|+.-..
T Consensus 486 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~ 564 (615)
T 1pgu_A 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 564 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred CccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCc
Confidence 456888887654 4444 4443 358999999877665432210 2345666665 6789999999999
Q ss_pred EEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1006 FHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1006 v~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
+.++.++.....+..+ ..+...++++.+..++.++.+..+|.+.+++++.
T Consensus 565 i~iw~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 565 IFIYSVKRPMKIIKAL--NAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEESSCTTCCEEET--TSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred EEEEECCCCceechhh--hcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 9997765433344433 2345678888887555588899999999998764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.53 E-value=0.0012 Score=89.14 Aligned_cols=381 Identities=11% Similarity=0.101 Sum_probs=194.6
Q ss_pred CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEe
Q 000944 549 RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQ 628 (1213)
Q Consensus 549 ~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~ 628 (1213)
+..++++ .++.+.++.+...+.+... ...-...|.++++.+ ...++++|..++.+.+|+++....+..
T Consensus 810 g~~l~~~-~~~~v~~~d~~~~~~~~~~-~~~~~~~v~~~~~sp------~~~~l~~~~~dg~v~vwd~~~~~~~~~---- 877 (1249)
T 3sfz_A 810 GDKIIVA-AKNKVLLFDIHTSGLLAEI-HTGHHSTIQYCDFSP------YDHLAVIALSQYCVELWNIDSRLKVAD---- 877 (1249)
T ss_dssp SSEEEEE-ETTEEEEEETTTCCEEEEE-ECSSSSCCCEEEECS------STTEEEEECSSSCEEEEETTTTEEEEE----
T ss_pred CCEEEEE-cCCcEEEEEecCCCceeEE-cCCCCCceEEEEEcC------CCCEEEEEeCCCeEEEEEcCCCceeee----
Confidence 3455544 5788888766533322222 222346788888865 356899999999999999853311111
Q ss_pred ecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEEE
Q 000944 629 SVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAML 708 (1213)
Q Consensus 629 ~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~ 708 (1213)
+......+.-+.+. ....+|+.+..||.+..|.+...... . ..... . ............++
T Consensus 878 -~~~h~~~v~~v~~s-----------pdg~~l~s~s~dg~v~vw~~~~~~~~-~---~~~~~-~--~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 878 -CRGHLSWVHGVMFS-----------PDGSSFLTASDDQTIRVWETKKVCKN-S---AIVLK-Q--EIDVVFQENETMVL 938 (1249)
T ss_dssp -ECCCSSCEEEEEEC-----------TTSSEEEEEETTSCEEEEEHHHHHSC-C---SSSEE-E--EEEEEEETTEEEEE
T ss_pred -cCCCccceEEEEEC-----------CCCCEEEEEeCCCeEEEEEcccccee-e---eeccc-c--eeeEEEcCCCcEEE
Confidence 11111122212222 23456889999999988876421100 0 00000 0 00001112222233
Q ss_pred Eec-CccEEEE-EeCCeEEEEecCccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CCCccceee
Q 000944 709 CLS-SRPWLGY-IHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LRYTPRRFV 784 (1213)
Q Consensus 709 ~~g-~~p~~i~-~~~~~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~~tp~~i~ 784 (1213)
..+ .+...+. ...+.....+ ...+.++ .|+. ..+.++..+ ++.+.+..+... . ....+. -...++.++
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~-~~sp--~g~~l~~g~~~g~i~i~d~~~~-~--~~~~~~~h~~~v~~l~ 1010 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLP--EAQVSCC-CLSP--HLEYVAFGDEDGAIKIIELPNN-R--VFSSGVGHKKAVRHIQ 1010 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEEC--CSCEEEE-EECT--TSSEEEEEETTSCCEEEETTTT-S--CEEECCCCSSCCCCEE
T ss_pred EecCCcceEEEecCcceEEEcc--cCcEEEE-EEcC--CCCEEEEEcCCCCEEEEEcCCC-c--eeeecccCCCceEEEE
Confidence 322 2222222 2233333222 1122222 2222 122333333 567777777652 2 222222 234677788
Q ss_pred ecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEE
Q 000944 785 LQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRV 864 (1213)
Q Consensus 785 y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l 864 (1213)
++|..+.++.++.+ +.+++
T Consensus 1011 ~s~dg~~l~s~~~d-------------------------------------------------------------g~i~v 1029 (1249)
T 3sfz_A 1011 FTADGKTLISSSED-------------------------------------------------------------SVIQV 1029 (1249)
T ss_dssp ECSSSSCEEEECSS-------------------------------------------------------------SBEEE
T ss_pred ECCCCCEEEEEcCC-------------------------------------------------------------CEEEE
Confidence 88877665544210 25778
Q ss_pred EeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecC
Q 000944 865 LDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEG 944 (1213)
Q Consensus 865 ~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g 944 (1213)
+|..+++.+. .....+.+.++.. . . ...++.|+. .|.+.+|++.... .++.+ ....+
T Consensus 1030 wd~~~~~~~~--~~~~~~~v~~~~~---~--~-~~~l~~~~~------------dg~v~vwd~~~~~-~~~~~--~~~~~ 1086 (1249)
T 3sfz_A 1030 WNWQTGDYVF--LQAHQETVKDFRL---L--Q-DSRLLSWSF------------DGTVKVWNVITGR-IERDF--TCHQG 1086 (1249)
T ss_dssp EETTTTEEEC--CBCCSSCEEEEEE---C--S-SSEEEEEES------------SSEEEEEETTTTC-CCEEE--ECCSS
T ss_pred EECCCCceEE--EecCCCcEEEEEE---c--C-CCcEEEEEC------------CCcEEEEECCCCc-eeEEE--cccCC
Confidence 8877766542 1233445555433 2 1 234555543 4788999886541 22222 23567
Q ss_pred cceEeccc-cC-eEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeEE
Q 000944 945 IPLALCQF-QG-RLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQLY 1019 (1213)
Q Consensus 945 ~V~ai~~~-~g-~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l~ 1019 (1213)
+|++++-- +| .|+++. .+.|++|++...+..... ......++++.. .+.++++|+.-..+.++.+.... .+.
T Consensus 1087 ~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l--~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~-~~~ 1163 (1249)
T 3sfz_A 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL--KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ-LLH 1163 (1249)
T ss_dssp CCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC--CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC-CCC
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee--ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eEE
Confidence 78777654 33 444433 357999999865543322 212345666554 56799999988888887665322 111
Q ss_pred Ee-------eccCCCcceEEEEeecCCe-eeeecCCCcEEEEecCC
Q 000944 1020 IF-------ADDSVPRWLTAAHHIDFDT-MAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1020 ~~-------a~D~~~~~~~~~~~ld~~~-~l~~D~~gnl~il~~~~ 1057 (1213)
.+ ....+..+++++.+-.++. ++.++ |.+.+++...
T Consensus 1164 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1207 (1249)
T ss_dssp CCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSS
T ss_pred EeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCC
Confidence 11 0123445677777765554 55555 8999987654
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.37 E-value=0.0042 Score=83.84 Aligned_cols=401 Identities=11% Similarity=0.128 Sum_probs=210.4
Q ss_pred CccEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 539 KRTIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 539 ~~~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
...|.+.+.. +.+++.+..+|.+.++.......+..+. .-...|.|+++.+ ...++++|+.|++|.+|++
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~------~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSS------DDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT------TSSEEEEEETTSEEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEec------CCCEEEEEeCCCeEEEEEC
Confidence 3457777765 4577766677888888765322222221 2246789999965 3568999999999999998
Q ss_pred CCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeec-CCCCe
Q 000944 617 DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLG-LRPPK 695 (1213)
Q Consensus 617 ~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG-~~pv~ 695 (1213)
.....+.... .....+..+.+.. .....++..|..||.+..|.+.. +... ....| ..++.
T Consensus 687 ~~~~~~~~~~-----~~~~~v~~~~~~~---------~~~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~~~h~~~v~ 747 (1249)
T 3sfz_A 687 ATGKLVHTYD-----EHSEQVNCCHFTN---------KSNHLLLATGSNDFFLKLWDLNQ--KECR---NTMFGHTNSVN 747 (1249)
T ss_dssp TTCCEEEEEE-----CCSSCEEEEEECS---------SSSCCEEEEEETTSCEEEEETTS--SSEE---EEECCCSSCEE
T ss_pred CCCceEEEEc-----CCCCcEEEEEEec---------CCCceEEEEEeCCCeEEEEECCC--cchh---heecCCCCCEE
Confidence 5432222221 1122222223321 22456788999999998887643 2211 11111 12222
Q ss_pred EEEEEECCeeEEEEe-cCccEEEEEeCCeEEEEecCccc--------------cceeeccccCCCCceEEEEeCCeEEEE
Q 000944 696 LFSVVVGGRAAMLCL-SSRPWLGYIHRGRFLLTPLSYET--------------LEYAASFSSDQCVEGVVSVAGNALRVF 760 (1213)
Q Consensus 696 l~~~~~~~~~~v~~~-g~~p~~i~~~~~~~~~~~~~~~~--------------v~~~~~f~~~~~~~~~i~~~~~~L~i~ 760 (1213)
-..+.-++. .++++ .+....++.-+..-....+.... ......|+.. ...++..+++.+.+.
T Consensus 748 ~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 748 HCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD--GDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT--SSEEEEEETTEEEEE
T ss_pred EEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC--CCEEEEEcCCcEEEE
Confidence 211211222 23333 34444455422111111111000 0001112111 234555567888877
Q ss_pred EEccCCCeeEEEEEe--CCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCC
Q 000944 761 TIERLGETFNETALP--LRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDEN 838 (1213)
Q Consensus 761 ~l~~~~~~~~~r~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1213)
.+... . ....+. -...+..++++|..+.+++++.+
T Consensus 825 d~~~~-~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------------------------------- 861 (1249)
T 3sfz_A 825 DIHTS-G--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ---------------------------------------- 861 (1249)
T ss_dssp ETTTC-C--EEEEEECSSSSCCCEEEECSSTTEEEEECSS----------------------------------------
T ss_pred EecCC-C--ceeEEcCCCCCceEEEEEcCCCCEEEEEeCC----------------------------------------
Confidence 77653 2 233333 34678888999888776655321
Q ss_pred CCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCc
Q 000944 839 KYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIV 918 (1213)
Q Consensus 839 ~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~ 918 (1213)
+.+++++..+++.+..+.- ....+.++. +. ....+++.|+.
T Consensus 862 ---------------------g~v~vwd~~~~~~~~~~~~-h~~~v~~v~---~s--pdg~~l~s~s~------------ 902 (1249)
T 3sfz_A 862 ---------------------YCVELWNIDSRLKVADCRG-HLSWVHGVM---FS--PDGSSFLTASD------------ 902 (1249)
T ss_dssp ---------------------SCEEEEETTTTEEEEEECC-CSSCEEEEE---EC--TTSSEEEEEET------------
T ss_pred ---------------------CeEEEEEcCCCceeeecCC-CccceEEEE---EC--CCCCEEEEEeC------------
Confidence 1466777766655544332 223344433 32 22345665543
Q ss_pred ccEEEEEEEEeC----------------------------CceEEEEE------EEeecCcceEeccc--cCeEEEEeC-
Q 000944 919 AGYIHIYRFVEE----------------------------GKSLELLH------KTQVEGIPLALCQF--QGRLLAGIG- 961 (1213)
Q Consensus 919 ~Gri~v~~i~~~----------------------------~~kl~~~~------~~~~~g~V~ai~~~--~g~ll~~~g- 961 (1213)
.|.+.+|++... ...+.... .....+++.+++-- +.+++++..
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 245566654321 00111110 01123556555433 345555444
Q ss_pred CeEEEEecCCceeeceeeecCccceEEEEE--EeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCC
Q 000944 962 PVLRLYDLGKKRLLRKCENKLFPNTIVSIN--TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD 1039 (1213)
Q Consensus 962 ~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~--~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~ 1039 (1213)
+.|++|++...+....... ....+.++. ..+++++.|..-..+.++.+. ......+ ..+...++++.+..++
T Consensus 983 g~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~--~~~~~~~--~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ--TGDYVFL--QAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp SCCEEEETTTTSCEEECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETT--TTEEECC--BCCSSCEEEEEECSSS
T ss_pred CCEEEEEcCCCceeeeccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECC--CCceEEE--ecCCCcEEEEEEcCCC
Confidence 5899999987655433222 233444444 457789999888888885543 3444332 2345567777777777
Q ss_pred eeeeecCCCcEEEEecCC
Q 000944 1040 TMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1040 ~~l~~D~~gnl~il~~~~ 1057 (1213)
.++.+..+|.+.+++...
T Consensus 1057 ~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp EEEEEESSSEEEEEETTT
T ss_pred cEEEEECCCcEEEEECCC
Confidence 888899999999998754
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.30 E-value=0.019 Score=69.94 Aligned_cols=503 Identities=12% Similarity=0.140 Sum_probs=245.8
Q ss_pred EEEecc-CCcccceEEeccCCCCCCcEEEEEecCCCCeEEEEccCCcceEEEEecCCCCcceEEEeeeCCCCCCceEEEE
Q 000944 396 IEQVES-LMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVV 474 (1213)
Q Consensus 396 ~d~~~n-~gPI~D~~~~~~~~~~~~~lv~~sG~g~~GsL~~lr~gi~~~~~~~~~l~~~~~~iw~l~~~~~~~~~~~lvl 474 (1213)
+.++.. -++|..+++.. ..++++++| .+|.|++... .-+.+..+.-.. ..++.+.... ...+|+.
T Consensus 50 ~~~l~gh~~~V~~l~fsp-----dg~~las~~--~d~~i~vWd~--~~~~~~~~~~~~--~~v~~~~~s~---d~~~l~~ 115 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSP-----DGQTIASAS--DDKTVKLWNR--NGQLLQTLTGHS--SSVRGVAFSP---DGQTIAS 115 (577)
T ss_dssp EEEEECCSSCEEEEEECT-----TSSEEEEEE--TTSCEEEEET--TSCEEEEECCCS--SCEEEEEECT---TSSEEEE
T ss_pred EEEEeCCCCCEEEEEECC-----CCCEEEEEe--CCCEEEEEEC--CCCEEEEEECCC--CCEEEEEECC---CCCEEEE
Confidence 334443 46888887753 234444443 4688988863 233444443322 4567776643 2356766
Q ss_pred EecCceeEEEe-cc-ceeeecC-------CCccCCCCeEEEEeecCCeEEEEeCCcEEEEeCCC-ceeeeeCCCCccEEE
Q 000944 475 SFNNATLVLSI-GE-TVEEVSD-------SGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDG-RINEWRTPGKRTIVK 544 (1213)
Q Consensus 475 S~~~~T~vl~~-~~-~~~e~~~-------~gf~~~~~Tl~a~~~~~~~ivQVT~~~i~l~~~~~-~~~~~~~~~~~~I~~ 544 (1213)
...+.+..+.- .. ....... ..+..+...++.+.- ...+++..... ....... ....|..
T Consensus 116 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~v~~ 185 (577)
T 2ymu_A 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD---------DKTVKLWNRNGQLLQTLTG-HSSSVWG 185 (577)
T ss_dssp EETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET---------TSEEEEECTTSCEEEEEEC-CSSCEEE
T ss_pred EcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccc---------ccceeccccceeeeeeccC-CCcceee
Confidence 65555544332 11 1111110 112222223322221 12222222221 1222222 2334666
Q ss_pred EEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCce
Q 000944 545 VGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCM 622 (1213)
Q Consensus 545 as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l 622 (1213)
.+.. +.+++.+..++.+.++. .++.+... -..-...|.++++.+ ...+++.+..++.+.+|+.+ ...+
T Consensus 186 ~~~~~~~~~l~~~~~d~~v~~w~--~~~~~~~~-~~~~~~~v~~~~~s~------dg~~l~~~~~d~~i~~w~~~-~~~~ 255 (577)
T 2ymu_A 186 VAFSPDGQTIASASDDKTVKLWN--RNGQLLQT-LTGHSSSVRGVAFSP------DGQTIASASDDKTVKLWNRN-GQLL 255 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEEC--TTSCEEEE-EECCSSCEEEEEECT------TSSCEEEEETTSCEEEECTT-SCEE
T ss_pred eeecCCCCEEEEEcCCCEEEEEe--CCCcEEEE-EecCCCCEEEEEECC------CCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 5554 45666666677777764 33433221 112245788998864 34678888889999999863 2222
Q ss_pred eEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEEC
Q 000944 623 QILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG 702 (1213)
Q Consensus 623 ~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~ 702 (1213)
..+ ......+.-+.+. ....+|+.+..||.+..+..+ ++.. ....|. .-.+..+...
T Consensus 256 ~~~-----~~~~~~v~~v~~~-----------~d~~~l~~~~~d~~i~~w~~~---~~~~---~~~~~h-~~~v~~~~~~ 312 (577)
T 2ymu_A 256 QTL-----TGHSSSVNGVAFR-----------PDGQTIASASDDKTVKLWNRN---GQLL---QTLTGH-SSSVWGVAFS 312 (577)
T ss_dssp EEE-----CCCSSCEEEEEEC-----------TTSSEEEEEETTSCEEEEETT---SCEE---EEECCC-SSCEEEEEEC
T ss_pred EEE-----ecCCCCEEEEEEc-----------CCCCEEEEEeCCCEEEEEeCC---CcEE---EEEecC-CCCeEEEEEC
Confidence 221 1111222112222 234578889999998777532 2211 111111 1111111121
Q ss_pred -CeeEEEEec-CccEEEEEeCC-eEEEEecCccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CC
Q 000944 703 -GRAAMLCLS-SRPWLGYIHRG-RFLLTPLSYETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LR 777 (1213)
Q Consensus 703 -~~~~v~~~g-~~p~~i~~~~~-~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~ 777 (1213)
+...++.++ +....++...+ .+...+-....+.+++ |+.. ...++... ++.+++..... + ..+++. -.
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~-~s~~--g~~l~~~~~dg~v~~~~~~~---~-~~~~~~~~~ 385 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA-FSPD--GQTIASASDDKTVKLWNRNG---Q-LLQTLTGHS 385 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE-ECTT--SSEEEEEETTSEEEEEETTC---C-EEEEEECCS
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEE-ECCC--CCEEEEEeCCCEEEEEcCCC---C-EEEEecCCC
Confidence 122233332 33333443222 1111111111222221 2111 12233333 45666655321 1 233333 24
Q ss_pred CccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCc
Q 000944 778 YTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDK 857 (1213)
Q Consensus 778 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 857 (1213)
..++.++++|+.+.++.++.+
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d----------------------------------------------------------- 406 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD----------------------------------------------------------- 406 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT-----------------------------------------------------------
T ss_pred CCeEEEEECCCCCEEEEEeCC-----------------------------------------------------------
Confidence 567788888887776655421
Q ss_pred eeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 858 WVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 858 ~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
..++++|. +++.+..+.- ....+.++. +. ....+++.|.. .|.+.+|+.. +..++.+
T Consensus 407 --~~v~~~~~-~~~~~~~~~~-~~~~v~~~~---~s--~d~~~l~~~~~------------d~~v~~w~~~--~~~~~~~ 463 (577)
T 2ymu_A 407 --KTVKLWNR-NGQLLQTLTG-HSSSVWGVA---FS--PDDQTIASASD------------DKTVKLWNRN--GQLLQTL 463 (577)
T ss_dssp --SEEEEECT-TCCEEEEEEC-CSSCEEEEE---EC--TTSSEEEEEET------------TSEEEEEETT--SCEEEEE
T ss_pred --CEEEEEeC-CCCEEEEecC-CCCCeEEEE---EC--CCCCEEEEEcC------------CCEEEEEECC--CCEEEEE
Confidence 15666763 3444444332 223455543 32 23467777653 3678888743 2233332
Q ss_pred EEEeecCcceEeccc-cCeEEEEe-C-CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 000944 938 HKTQVEGIPLALCQF-QGRLLAGI-G-PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYR 1012 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~-~g~ll~~~-g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~ 1012 (1213)
....++|++++-- +|+++++. . ..|++|+...+.+ +.... +...|+++.. .+.+++.|+.-..|.++.
T Consensus 464 --~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~-~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd-- 536 (577)
T 2ymu_A 464 --TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 536 (577)
T ss_dssp --ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEE-EEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEEC--
T ss_pred --cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEE-EEEeC--CCCCEEEEEEcCCCCEEEEEECcCEEEEEe--
Confidence 2457888887643 45555533 3 5799999754433 32222 2345666665 467899998888888854
Q ss_pred ccCCeEEEeeccCCCcceEEEEeecCC-eeeeecCCCcEEEE
Q 000944 1013 RDENQLYIFADDSVPRWLTAAHHIDFD-TMAGADKFGNIYFV 1053 (1213)
Q Consensus 1013 ~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D~~gnl~il 1053 (1213)
.....+..+. .+...++++.|..++ .++.+..+|.|+++
T Consensus 537 ~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 537 RNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp TTSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 4444444443 244567788776444 56777888988875
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.24 E-value=0.0029 Score=74.94 Aligned_cols=329 Identities=15% Similarity=0.163 Sum_probs=180.9
Q ss_pred EEEEEecCCEEEEEEeCCEEEEEEEccCCCeEEeeee-ccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCC
Q 000944 542 IVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKH-EMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDD 620 (1213)
Q Consensus 542 I~~as~~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~-~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~ 620 (1213)
|.+.+..+++++.+..+|.|.++.+.. ++.. ..+ .-...|.|++..+ ...+++|..|++|.+|+++...
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~-~~~~--~~~~~h~~~V~~l~~~~-------~~~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSIN-KKFL--LQLSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTT-TEEE--EEECCCSSCEEEEEECS-------TTEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCC-CcEE--EEEeCCCcCEEEEEEcC-------CCEEEEEeCCCCEEEEECCCCc
Confidence 566666778888777788998887653 3221 111 2346789998853 2288899999999999995332
Q ss_pred ceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEE
Q 000944 621 CMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVV 700 (1213)
Q Consensus 621 ~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~ 700 (1213)
.+.. +......+..+.+.. .....+|+.|..||.+..|.+..... .. ..+. .
T Consensus 195 ~~~~-----~~~h~~~v~~l~~~~---------~~~~~~l~s~s~d~~i~vwd~~~~~~-~~-----~~~~--------~ 246 (464)
T 3v7d_B 195 CTHV-----FEGHNSTVRCLDIVE---------YKNIKYIVTGSRDNTLHVWKLPKESS-VP-----DHGE--------E 246 (464)
T ss_dssp EEEE-----ECCCSSCEEEEEEEE---------SSSCEEEEEEETTSCEEEEECCCCCC-C-------------------
T ss_pred EEEE-----ECCCCCccEEEEEec---------CCCCCEEEEEcCCCcEEEeeCCCCcc-cc-----cccc--------c
Confidence 2221 111112222222221 12457899999999998888753211 00 0000 0
Q ss_pred ECCeeEEEEe-cCccEEEEEeCCeEEEEecCccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CC
Q 000944 701 VGGRAAMLCL-SSRPWLGYIHRGRFLLTPLSYETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LR 777 (1213)
Q Consensus 701 ~~~~~~v~~~-g~~p~~i~~~~~~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~ 777 (1213)
.....++.. ...++++....+. ...+.++.+ .++-++..+ ++.+++-.+... -.++.+. -.
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~-----~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~ 310 (464)
T 3v7d_B 247 -HDYPLVFHTPEENPYFVGVLRGH-------MASVRTVSG-----HGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHT 310 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCC-------SSCEEEEEE-----ETTEEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred -CCcceEeeccCCCeEEEEEccCc-------cceEEEEcC-----CCCEEEEEeCCCeEEEEECCCC---cEEEEecCCC
Confidence 000111111 1122222211110 011222211 022333333 567777666542 2334443 23
Q ss_pred CccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCc
Q 000944 778 YTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDK 857 (1213)
Q Consensus 778 ~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 857 (1213)
..+..++++|..+.++.++.+
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~d----------------------------------------------------------- 331 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMD----------------------------------------------------------- 331 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETT-----------------------------------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCC-----------------------------------------------------------
Confidence 466778888877766555310
Q ss_pred eeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 858 WVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 858 ~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
+.++++|..+++.+..+.- ....+.++. +. ..+++.|+. .|.|.+|++... +...
T Consensus 332 --g~i~vwd~~~~~~~~~~~~-h~~~v~~~~---~~----~~~l~s~s~------------dg~v~vwd~~~~--~~~~- 386 (464)
T 3v7d_B 332 --TTIRIWDLENGELMYTLQG-HTALVGLLR---LS----DKFLVSAAA------------DGSIRGWDANDY--SRKF- 386 (464)
T ss_dssp --SCEEEEETTTTEEEEEECC-CSSCEEEEE---EC----SSEEEEEET------------TSEEEEEETTTC--CEEE-
T ss_pred --CcEEEEECCCCcEEEEEeC-CCCcEEEEE---Ec----CCEEEEEeC------------CCcEEEEECCCC--ceee-
Confidence 2588889888887766543 234455443 32 357777764 478999998754 2221
Q ss_pred EEEeecCcc--eEeccccCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEE
Q 000944 938 HKTQVEGIP--LALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCK 1010 (1213)
Q Consensus 938 ~~~~~~g~V--~ai~~~~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~ 1010 (1213)
.......+ .++..-+..++++..+.|++|++...+++...... ....+.++...++.++++-..++..++.
T Consensus 387 -~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~-~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 387 -SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILK-DADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp -EEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTT-TCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred -eecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhcc-CCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 12233333 33444445666677789999999988776542232 3557888888888888887777766654
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.17 E-value=0.034 Score=67.67 Aligned_cols=506 Identities=12% Similarity=0.141 Sum_probs=245.1
Q ss_pred EEEecc-CCcccceEEeccCCCCCCcEEEEEecCCCCeEEEEccCCcceEEEEecCCCCcceEEEeeeCCCCCCceEEEE
Q 000944 396 IEQVES-LMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVV 474 (1213)
Q Consensus 396 ~d~~~n-~gPI~D~~~~~~~~~~~~~lv~~sG~g~~GsL~~lr~gi~~~~~~~~~l~~~~~~iw~l~~~~~~~~~~~lvl 474 (1213)
..+|.. -++|..+++-. ..++++.+ +.+|.+++... .-+.+..+.-.. ..++.+.... ...+|+.
T Consensus 9 ~~~L~GH~~~V~~~a~sp-----dg~~las~--~~d~~v~iWd~--~~~~~~~l~gh~--~~V~~l~fsp---dg~~las 74 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSP-----DGQTIASA--SDDKTVKLWNR--NGQLLQTLTGHS--SSVWGVAFSP---DGQTIAS 74 (577)
T ss_dssp EEEECCCSSCEEEEEECT-----TSSCEEEE--ETTSEEEEECT--TSCEEEEEECCS--SCEEEEEECT---TSSEEEE
T ss_pred eeEECCCCCcEEEEEECC-----CCCEEEEE--eCCCEEEEEEC--CCCEEEEEeCCC--CCEEEEEECC---CCCEEEE
Confidence 344544 45888888753 22344433 35688988863 334444444332 4688887753 2357776
Q ss_pred EecCcee-EEEe-ccceeeecC-------CCccCCCCeEEEEeecCCeEEEEeCCcEEEEeCCCceeeeeCCCCccEEEE
Q 000944 475 SFNNATL-VLSI-GETVEEVSD-------SGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKV 545 (1213)
Q Consensus 475 S~~~~T~-vl~~-~~~~~e~~~-------~gf~~~~~Tl~a~~~~~~~ivQVT~~~i~l~~~~~~~~~~~~~~~~~I~~a 545 (1213)
...+.+. +... ++.+..+.. -.|..+.+.|+++.- ++ .+++.+...............+...
T Consensus 75 ~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-d~--------~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (577)
T 2ymu_A 75 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DK--------TVKLWNRNGQLLQTLTGHSSSVWGV 145 (577)
T ss_dssp EETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-TS--------CEEEEETTCCEEEEECCCSSCEEEE
T ss_pred EeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcC-CC--------ceeecccccceeeeccCCCCceeee
Confidence 6565554 3333 222222211 123334445544432 22 2222222211111111122334444
Q ss_pred Eec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCcee
Q 000944 546 GSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQ 623 (1213)
Q Consensus 546 s~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~ 623 (1213)
... ...++....++.+.+.. .++.... ........+.+++..+ ...+++.|..++.+.+|+.+ ...+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~v~~w~~~-~~~~~ 215 (577)
T 2ymu_A 146 AFSPDGQTIASASDDKTVKLWN--RNGQLLQ-TLTGHSSSVWGVAFSP------DGQTIASASDDKTVKLWNRN-GQLLQ 215 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEEC--TTSCEEE-EEECCSSCEEEEEECT------TSSCEEEEETTSEEEEECTT-SCEEE
T ss_pred eeecCCccceecccccceeccc--cceeeee-eccCCCcceeeeeecC------CCCEEEEEcCCCEEEEEeCC-CcEEE
Confidence 443 22333332333333322 1222111 1223345677877754 34678889999999999863 22222
Q ss_pred EeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEEC-
Q 000944 624 ILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG- 702 (1213)
Q Consensus 624 ~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~- 702 (1213)
.+.. -.....++. +. ....+|+.|..||.+..+.. +++. ...+....-....+...
T Consensus 216 ~~~~--~~~~v~~~~---~s-----------~dg~~l~~~~~d~~i~~w~~---~~~~----~~~~~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 216 TLTG--HSSSVRGVA---FS-----------PDGQTIASASDDKTVKLWNR---NGQL----LQTLTGHSSSVNGVAFRP 272 (577)
T ss_dssp EEEC--CSSCEEEEE---EC-----------TTSSCEEEEETTSCEEEECT---TSCE----EEEECCCSSCEEEEEECT
T ss_pred EEec--CCCCEEEEE---EC-----------CCCCEEEEEeCCCEEEEEeC---CCCE----EEEEecCCCCEEEEEEcC
Confidence 2211 011122322 21 13446788999999877653 2211 11111111112222221
Q ss_pred CeeEEEE-ecCccEEEEEeCCeEEEE-ecCccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEeC-CC
Q 000944 703 GRAAMLC-LSSRPWLGYIHRGRFLLT-PLSYETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALPL-RY 778 (1213)
Q Consensus 703 ~~~~v~~-~g~~p~~i~~~~~~~~~~-~~~~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~l-~~ 778 (1213)
....++. ..+....++...+++... +-....+.+++ |+.. ...++... ++.+++-.+.. -..+.+.- ..
T Consensus 273 d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~-~~~~--~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~ 345 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPD--GQTIASASDDKTVKLWNRNG----QHLQTLTGHSS 345 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE-ECTT--SSEEEEEETTSCEEEEETTS----CEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEE-ECCC--CCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCC
Confidence 1222222 234444455433332211 11111232221 2211 12233333 45676655432 23344432 34
Q ss_pred ccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCce
Q 000944 779 TPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKW 858 (1213)
Q Consensus 779 tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 858 (1213)
.+..++++|..+.++.+..+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~d------------------------------------------------------------ 365 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDD------------------------------------------------------------ 365 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT------------------------------------------------------------
T ss_pred CEEEEEECCCCCEEEEEeCC------------------------------------------------------------
Confidence 56778888877766554310
Q ss_pred eeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE
Q 000944 859 VSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH 938 (1213)
Q Consensus 859 ~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~ 938 (1213)
..+++++. +++.+..+.- ....+.++. +. ...++++.|.. .|.|.+|+. ++..++.+
T Consensus 366 -g~v~~~~~-~~~~~~~~~~-~~~~v~~~~---~s--~dg~~l~~~~~------------d~~v~~~~~--~~~~~~~~- 422 (577)
T 2ymu_A 366 -KTVKLWNR-NGQLLQTLTG-HSSSVRGVA---FS--PDGQTIASASD------------DKTVKLWNR--NGQLLQTL- 422 (577)
T ss_dssp -SEEEEEET-TCCEEEEEEC-CSSCEEEEE---EC--TTSSCEEEEET------------TSEEEEECT--TCCEEEEE-
T ss_pred -CEEEEEcC-CCCEEEEecC-CCCCeEEEE---EC--CCCCEEEEEeC------------CCEEEEEeC--CCCEEEEe-
Confidence 15677774 3455544432 234455543 33 23467777753 367888873 22233332
Q ss_pred EEeecCcceEeccc-cC-eEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 000944 939 KTQVEGIPLALCQF-QG-RLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~-~g-~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
....++|++++-- ++ +|+++.. ..|++|+...+.+.... . ....+.++.. .+.+++.|..-..+.++ +.
T Consensus 423 -~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~-~--~~~~v~~~~~spd~~~las~~~d~~i~iw--~~ 496 (577)
T 2ymu_A 423 -TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT-G--HSSSVRGVAFSPDGQTIASASDDKTVKLW--NR 496 (577)
T ss_dssp -ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE-C--CSSCEEEEEECTTSCEEEEEETTSEEEEE--ET
T ss_pred -cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc-C--CCCCEEEEEEcCCCCEEEEEeCCCEEEEE--cC
Confidence 3457888887643 34 4444443 57999998655442222 1 2335555554 56788888887777774 44
Q ss_pred cCCeEEEeeccCCCcceEEEEeecCC-eeeeecCCCcEEEEec
Q 000944 1014 DENQLYIFADDSVPRWLTAAHHIDFD-TMAGADKFGNIYFVRL 1055 (1213)
Q Consensus 1014 ~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D~~gnl~il~~ 1055 (1213)
+...+..+.. +...++++.|-.++ .++.++.+|.|.++++
T Consensus 497 ~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 497 NGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp TSCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCEEEEEeC--CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 4444444432 34557777776444 5677899999999975
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.01 E-value=0.048 Score=67.18 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=46.4
Q ss_pred EEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecC-CeeeeecCCCcEEEEecCC
Q 000944 989 SINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF-DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 989 ~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gnl~il~~~~ 1057 (1213)
+++..+.++++|..-..+.++..+. ..+..+....++..++++.|-.+ ..++.++.++.+.+++...
T Consensus 455 a~spdg~~lasgs~D~~v~lwd~~~--~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQDSKVHVYKLSG--ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEET--TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred EEeCCCCEEEEeCCCCeEEEEEccC--CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 3444578999999888888877653 34433333335667888877544 4567889999999998753
No 10
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.96 E-value=0.0053 Score=68.87 Aligned_cols=285 Identities=12% Similarity=0.074 Sum_probs=137.6
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|+|+++.+. ...+++.|..|++|.||+++............+......+.-+.+. ....+|+
T Consensus 39 ~~V~~v~~sp~-----~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s-----------~dg~~l~ 102 (340)
T 4aow_A 39 GWVTQIATTPQ-----FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-----------SDGQFAL 102 (340)
T ss_dssp SCEEEEEECTT-----CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC-----------TTSSEEE
T ss_pred CCEEEEEEeCC-----CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC-----------CCCCEEE
Confidence 57999999652 2568999999999999999544322222222222222222222332 2456788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEEEEe-cCccEEEEEeCCeEEEEecCc--cccceee
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCL-SSRPWLGYIHRGRFLLTPLSY--ETLEYAA 738 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-g~~p~~i~~~~~~~~~~~~~~--~~v~~~~ 738 (1213)
.|..||.+..+..... ... ........++....+ ......++.+ .++...++...+......... .......
T Consensus 103 s~~~d~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTG--TTT--RRFVGHTKDVLSVAF-SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EEETTSEEEEEETTTT--EEE--EEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred EEcccccceEEeeccc--cee--eeecCCCCceeEEEE-eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 9999999877765322 110 011111111111111 1122223322 344444554332222211111 1111112
Q ss_pred ccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhH
Q 000944 739 SFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFE 816 (1213)
Q Consensus 739 ~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 816 (1213)
.|.......-++... ++.+++..+... -..+.+. -...++.++++|+.+.++.++.+
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D------------------ 236 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLCASGGKD------------------ 236 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETT------------------
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCEEEEEeCC------------------
Confidence 222211111222233 456776665542 2233332 23466788888887766655311
Q ss_pred hcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCC
Q 000944 817 AAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKE 896 (1213)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~ 896 (1213)
..++++|..+++.+..+.. .+.+.++. +. .
T Consensus 237 -------------------------------------------g~i~iwd~~~~~~~~~~~~--~~~v~~~~---~~--~ 266 (340)
T 4aow_A 237 -------------------------------------------GQAMLWDLNEGKHLYTLDG--GDIINALC---FS--P 266 (340)
T ss_dssp -------------------------------------------CEEEEEETTTTEEEEEEEC--SSCEEEEE---EC--S
T ss_pred -------------------------------------------CeEEEEEeccCceeeeecC--CceEEeee---cC--C
Confidence 2688889888877765543 34555443 32 2
Q ss_pred CceEEEEEeeecCccCCCCCCcccEEEEEEEEeCC------ceEEEEEEEeecCcceEeccc-cCeEEE-EeC-CeEEEE
Q 000944 897 HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG------KSLELLHKTQVEGIPLALCQF-QGRLLA-GIG-PVLRLY 967 (1213)
Q Consensus 897 ~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~------~kl~~~~~~~~~g~V~ai~~~-~g~ll~-~~g-~~l~i~ 967 (1213)
. .+++.|.. .|.|.+|++.... ............++|++++-- +|.+++ |.. +.|++|
T Consensus 267 ~-~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 267 N-RYWLCAAT------------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp S-SSEEEEEE------------TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred C-CceeeccC------------CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 2 34444442 2678888765420 011111223456788887643 444444 333 579999
Q ss_pred ecCC
Q 000944 968 DLGK 971 (1213)
Q Consensus 968 ~~~~ 971 (1213)
++..
T Consensus 334 ~~~t 337 (340)
T 4aow_A 334 QVTI 337 (340)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 8753
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.93 E-value=0.041 Score=70.17 Aligned_cols=222 Identities=9% Similarity=0.071 Sum_probs=113.1
Q ss_pred cEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeec-cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeC
Q 000944 541 TIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLD 617 (1213)
Q Consensus 541 ~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~ 617 (1213)
.|.+.+.. +++++++..+|.+.++.+.. +... ..+. -...|.|+++.+ ...++++|..+|.|.+|+++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET-QVEV--RSIQVTETPVRAGKFIA------RKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEE--EEEECCSSCEEEEEEEG------GGTEEEEEETTSEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCC-CceE--EEEecCCCcEEEEEEeC------CCCEEEEEeCCCeEEEEECC
Confidence 46666665 46777776788888886553 3221 1222 346789999975 35789999999999999985
Q ss_pred CCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeec--CCCCe
Q 000944 618 PDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLG--LRPPK 695 (1213)
Q Consensus 618 p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG--~~pv~ 695 (1213)
....+..+. ..+..+.-+.+. ....+|+.|..||.+..|.++... .. ...+. ..++.
T Consensus 86 ~~~~~~~~~-----~~~~~v~~~~~s-----------~~~~~l~~~~~dg~i~vw~~~~~~-~~----~~~~~~~~~~v~ 144 (814)
T 3mkq_A 86 TGEKVVDFE-----AHPDYIRSIAVH-----------PTKPYVLSGSDDLTVKLWNWENNW-AL----EQTFEGHEHFVM 144 (814)
T ss_dssp TCCEEEEEE-----CCSSCEEEEEEC-----------SSSSEEEEEETTSEEEEEEGGGTS-EE----EEEEECCSSCEE
T ss_pred CCcEEEEEe-----cCCCCEEEEEEe-----------CCCCEEEEEcCCCEEEEEECCCCc-eE----EEEEcCCCCcEE
Confidence 332222221 112222222332 234578899999999988875321 11 11121 12222
Q ss_pred EEEEEECCeeEEEEe-cCccEEEEEeC-CeE-EEEecCc-cccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeE
Q 000944 696 LFSVVVGGRAAMLCL-SSRPWLGYIHR-GRF-LLTPLSY-ETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFN 770 (1213)
Q Consensus 696 l~~~~~~~~~~v~~~-g~~p~~i~~~~-~~~-~~~~~~~-~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~ 770 (1213)
-..+.-.+...++++ .++...++.-+ +.. ....... ..+..++ |+.......++..+ ++.+.+-.+..- -.
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~ 220 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTK---SC 220 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE-ECCSTTCCEEEEECTTSEEEEEETTTT---EE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE-EEECCCCCEEEEEeCCCEEEEEECCCC---cE
Confidence 222211022233333 34555555422 111 1111111 2232221 21111112233333 467777666542 23
Q ss_pred EEEEeC-CCccceeeecCCCceEEEEE
Q 000944 771 ETALPL-RYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 771 ~r~i~l-~~tp~~i~y~~~~~~~~v~~ 796 (1213)
++.+.- ...+..++++|..+.++.+.
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 455543 35778889999887666554
No 12
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0033 Score=73.83 Aligned_cols=171 Identities=9% Similarity=0.103 Sum_probs=92.5
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK- 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~- 939 (1213)
.++++|..+++.+..+.+.....+.+++...-. .....+++.|+. .|.|.+|++... ..++.+..
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-s~~~~~l~s~~~------------dg~i~iwd~~~~-~~~~~~~~~ 302 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY-GKNSVIVVGGSS------------KTFLTIWNFVKG-HCQYAFINS 302 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT-CTTEEEEEEEST------------TEEEEEEETTTT-EEEEEEESS
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEecccc-CCCccEEEEEcC------------CCcEEEEEcCCC-cEEEEEEcC
Confidence 588999988888888887776677776542110 123467777753 478999988653 12222211
Q ss_pred -----------------------EeecCcceEeccccCeEEEEeC--CeEEEEecCCceeeceeeec-CccceEEEEEEe
Q 000944 940 -----------------------TQVEGIPLALCQFQGRLLAGIG--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTY 993 (1213)
Q Consensus 940 -----------------------~~~~g~V~ai~~~~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~ 993 (1213)
....++|++++--++.++++.+ ..|++|++...+........ ............
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred CCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence 0145668877777777666555 58999999876543321111 011122233333
Q ss_pred CCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecC--C-eeeeecCCCcEEEEe
Q 000944 994 RDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF--D-TMAGADKFGNIYFVR 1054 (1213)
Q Consensus 994 ~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~--~-~~l~~D~~gnl~il~ 1054 (1213)
.+..++...++. .....+.. ...+...++++.+... . .++.+|.+|.|.+++
T Consensus 383 ~~~~~~~~~~~~-------~~~~~~~~--~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 383 ANLTMLLRKMKR-------TSTHSVDD--SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TTEEEEEEECC----------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceEEEEEeccc-------ccccccCc--ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 332222111110 01111111 1124455777776644 3 578899999999874
No 13
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.91 E-value=0.0058 Score=68.29 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=80.1
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+... ..+.++. +. ...+++++|+. .|.+.+|++... +.. ...
T Consensus 206 ~i~~~d~~~~~~~~~~~~~--~~v~~~~---~s--~~~~~l~~~~~------------~~~i~~~~~~~~--~~~--~~~ 262 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFT--SQIFSLG---YC--PTGEWLAVGME------------SSNVEVLHVNKP--DKY--QLH 262 (337)
T ss_dssp EEEEEETTTTEEEEEEECS--SCEEEEE---EC--TTSSEEEEEET------------TSCEEEEETTSS--CEE--EEC
T ss_pred cEEEEECCCCceEeeecCC--CceEEEE---EC--CCCCEEEEEcC------------CCcEEEEECCCC--CeE--EEc
Confidence 6888888888777766543 3454443 32 23468888863 467889987654 322 224
Q ss_pred eecCcceEeccc-cCe-EEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEE
Q 000944 941 QVEGIPLALCQF-QGR-LLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKY 1011 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~-ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~ 1011 (1213)
...++|++++-- ++. |+++. .+.|++|++...+...... ....+.++.. .++++++|+.-..+.++++
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 567888888765 344 44443 3589999998766543322 2334555554 4678999998888888764
No 14
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.014 Score=64.37 Aligned_cols=278 Identities=12% Similarity=0.072 Sum_probs=145.1
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEE
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~L 660 (1213)
...|.|+++ + ...++++|..||.|.+|+++.......+.. -.....++ .+. ....+|
T Consensus 18 ~~~v~~~~~-~------~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~--~~~~v~~~---~~~-----------~~~~~l 74 (313)
T 3odt_A 18 DQDVRDVVA-V------DDSKVASVSRDGTVRLWSKDDQWLGTVVYT--GQGFLNSV---CYD-----------SEKELL 74 (313)
T ss_dssp SSCEEEEEE-E------ETTEEEEEETTSEEEEEEESSSEEEEEEEE--CSSCEEEE---EEE-----------TTTTEE
T ss_pred CCCcEEEEe-c------CCCEEEEEEcCCcEEEEECCCCEEEEEeec--CCccEEEE---EEC-----------CCCCEE
Confidence 357899988 3 255788999999999999943311221111 11122232 232 134578
Q ss_pred EEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEEEEec-CccEEEEEeCCeE-EEEecCccccceee
Q 000944 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLS-SRPWLGYIHRGRF-LLTPLSYETLEYAA 738 (1213)
Q Consensus 661 ligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~g-~~p~~i~~~~~~~-~~~~~~~~~v~~~~ 738 (1213)
++|..||.+..|.+...... .......-...++ ..+..++. .+++.+ +....++. .+.. .........+.+++
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~-~~~~~~~~~~~~i--~~~~~~~~-~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGE-DPLYTLIGHQGNV--CSLSFQDG-VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp EEEETTSCEEEEETTCCTTS-CC-CEECCCSSCE--EEEEEETT-EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEE
T ss_pred EEecCCCeEEEEEeeecCCC-CcccchhhcccCE--EEEEecCC-EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEE
Confidence 99999999988877542210 0011111111222 22223232 333333 44444555 2322 22222222333332
Q ss_pred ccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe--CCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhh
Q 000944 739 SFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP--LRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECF 815 (1213)
Q Consensus 739 ~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~--l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 815 (1213)
-+... ++.++..+ ++.+.+.... . ..+.+. ....+..++++|..+ +++++.
T Consensus 150 ~~~~~--~~~l~~~~~d~~i~i~d~~---~--~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------------------ 203 (313)
T 3odt_A 150 VVSFS--ENKFLTASADKTIKLWQND---K--VIKTFSGIHNDVVRHLAVVDDGH-FISCSN------------------ 203 (313)
T ss_dssp EEETT--TTEEEEEETTSCEEEEETT---E--EEEEECSSCSSCEEEEEEEETTE-EEEEET------------------
T ss_pred EccCC--CCEEEEEECCCCEEEEecC---c--eEEEEeccCcccEEEEEEcCCCe-EEEccC------------------
Confidence 22211 23344444 4577666521 1 223332 455677788887766 333321
Q ss_pred HhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccC
Q 000944 816 EAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDK 895 (1213)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~ 895 (1213)
.+.++++|..+++.+..+.-. ...+.++. +..
T Consensus 204 -------------------------------------------dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~---~~~- 235 (313)
T 3odt_A 204 -------------------------------------------DGLIKLVDMHTGDVLRTYEGH-ESFVYCIK---LLP- 235 (313)
T ss_dssp -------------------------------------------TSEEEEEETTTCCEEEEEECC-SSCEEEEE---ECT-
T ss_pred -------------------------------------------CCeEEEEECCchhhhhhhhcC-CceEEEEE---Eec-
Confidence 026889998888887766533 23455543 332
Q ss_pred CCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe-CCeEEEEecCCce
Q 000944 896 EHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI-GPVLRLYDLGKKR 973 (1213)
Q Consensus 896 ~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~-g~~l~i~~~~~~~ 973 (1213)
++ .++.|+. .|.|.+|++... ++.... ....++|++++-. +|+++++. .+.|++|++...+
T Consensus 236 ~~--~l~~~~~------------dg~v~iwd~~~~--~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 236 NG--DIVSCGE------------DRTVRIWSKENG--SLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp TS--CEEEEET------------TSEEEEECTTTC--CEEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred CC--CEEEEec------------CCEEEEEECCCC--ceeEEE-eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 22 3665553 478999998754 322222 2345688888754 45665544 4689999999776
Q ss_pred eece
Q 000944 974 LLRK 977 (1213)
Q Consensus 974 l~~~ 977 (1213)
+...
T Consensus 299 ~~~~ 302 (313)
T 3odt_A 299 WASE 302 (313)
T ss_dssp CCC-
T ss_pred eeeh
Confidence 6544
No 15
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.021 Score=65.98 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=103.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+.+.+..+. .....+.++.. . ...+++++|+. .|.|.+|++.... .+..+ .
T Consensus 228 ~i~~~d~~~~~~~~~~~-~~~~~i~~~~~---~--~~~~~l~~~~~------------d~~i~i~d~~~~~-~~~~~--~ 286 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLI-GHHGPISVLEF---N--DTNKLLLSASD------------DGTLRIWHGGNGN-SQNCF--Y 286 (425)
T ss_dssp CEEEEETTCSSCSEEEC-CCSSCEEEEEE---E--TTTTEEEEEET------------TSCEEEECSSSBS-CSEEE--C
T ss_pred eEEEEEcCCCceeeeec-cCCCceEEEEE---C--CCCCEEEEEcC------------CCEEEEEECCCCc-cceEe--c
Confidence 46777777666555443 22344555433 2 22357777763 4678899876541 12211 2
Q ss_pred eecCcceEecccc-CeEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCC
Q 000944 941 QVEGIPLALCQFQ-GRLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDEN 1016 (1213)
Q Consensus 941 ~~~g~V~ai~~~~-g~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~ 1016 (1213)
...++|++++-.. +.++++. ...|++|++...+....... ....+.++.. .++++++|..-..+.++.++....
T Consensus 287 ~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~ 364 (425)
T 1r5m_A 287 GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS 364 (425)
T ss_dssp CCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC
T ss_pred CCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc
Confidence 3567888887663 4555444 35899999987765444332 2335666654 478999999888899977754320
Q ss_pred -------------------eEEEeeccCCCc-ceEEEEeecCC-eeeeecCCCcEEEEecC
Q 000944 1017 -------------------QLYIFADDSVPR-WLTAAHHIDFD-TMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1017 -------------------~l~~~a~D~~~~-~~~~~~~ld~~-~~l~~D~~gnl~il~~~ 1056 (1213)
.+..+ +..... .++++.+-.++ .++++..+|.|.+++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 22222 222112 67777776444 56788899999998764
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.82 E-value=0.15 Score=62.79 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=95.1
Q ss_pred CceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEeC--CeEEEEecCC-c
Q 000944 897 HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGIG--PVLRLYDLGK-K 972 (1213)
Q Consensus 897 ~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~g--~~l~i~~~~~-~ 972 (1213)
..+++++|+. .|.|.+|++... +++.+......++|++++-- +|+++++.+ .++++|+... .
T Consensus 459 dg~~lasgs~------------D~~v~lwd~~~~--~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 459 DKQFVAVGGQ------------DSKVHVYKLSGA--SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp TSCEEEEEET------------TSEEEEEEEETT--EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CCCEEEEeCC------------CCeEEEEEccCC--ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 3478998874 478999999764 55544446678899988654 455555433 5899999975 5
Q ss_pred eeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCC-CcceEEEEeecCCeeeeecCCCc
Q 000944 973 RLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSV-PRWLTAAHHIDFDTMAGADKFGN 1049 (1213)
Q Consensus 973 ~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~-~~~~~~~~~ld~~~~l~~D~~gn 1049 (1213)
++........+...|.++.. .+.+|+.|..-+.|.++.++.....+..+ ...+ ...++++.|..++.++.+..+|.
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~-~~~h~~~~v~~v~fs~d~~l~s~~~D~~ 603 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-KGAHAMSSVNSVIWLNETTIVSAGQDSN 603 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-TTSSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh-hccCcccCeeEEEEcCCCEEEEecCCCC
Confidence 55432112112335666554 57799999999999997665432222122 2233 56788888887777888888999
Q ss_pred EEEEec
Q 000944 1050 IYFVRL 1055 (1213)
Q Consensus 1050 l~il~~ 1055 (1213)
|.+++.
T Consensus 604 i~lW~~ 609 (611)
T 1nr0_A 604 IKFWNV 609 (611)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998875
No 17
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.049 Score=64.11 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=40.0
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEE-EeCCceEEEEEEEeecCcceEeccccCeEEEEeCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRF-VEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGP 962 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i-~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g~ 962 (1213)
..++++|... .|.|.+|++ +..+.+++.+......++|.+++-..+.+++++++
T Consensus 319 ~~~l~~~~~~-----------d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 319 LPFVAFFVEA-----------TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp SSEEEEEETT-----------CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred CCEEEEEECC-----------CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence 4688887731 478999999 33345778777777779999988877888887754
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.67 E-value=0.024 Score=63.20 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=121.6
Q ss_pred EEEEEeCCCCceEEEEEcC-CCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQ-DNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~-~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
.++++|..+.+......+. ....+.++.. . ...+++++|+. .|.+.+|++... +.....
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~---~--~~~~~l~~~~~------------dg~v~~~d~~~~--~~~~~~- 179 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAI---S--PDSKVCFSCCS------------DGNIAVWDLHNQ--TLVRQF- 179 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEE---C--TTSSEEEEEET------------TSCEEEEETTTT--EEEEEE-
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEE---C--CCCCEEEEEeC------------CCcEEEEeCCCC--ceeeee-
Confidence 5777777666533223332 2334555433 2 23467787763 467889987653 222211
Q ss_pred EeecCcceEeccc-cC-eEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEecc
Q 000944 940 TQVEGIPLALCQF-QG-RLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRD 1014 (1213)
Q Consensus 940 ~~~~g~V~ai~~~-~g-~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~ 1014 (1213)
....++|++++-- ++ +|+++. ...|++|++...+....... +..+.++.. .++++++|.....+.++..+
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~-- 254 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-- 254 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETT--
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECC--
Confidence 2356788887664 34 454443 35899999987765444322 334555554 57899999988888886554
Q ss_pred CCeEEEeeccCCCcceEEEEeecC-CeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeee
Q 000944 1015 ENQLYIFADDSVPRWLTAAHHIDF-DTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFH 1093 (1213)
Q Consensus 1015 ~~~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 1093 (1213)
......+. .+...++++.+-.+ ..++.+..+|.+.+++.... ..+ ....
T Consensus 255 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-------------------------~~~---~~~~ 304 (337)
T 1gxr_A 255 KPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-------------------------ASI---FQSK 304 (337)
T ss_dssp SSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------------CEE---EEEE
T ss_pred CCCeEEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCC-------------------------eEE---EEec
Confidence 33333332 23455777776543 45778888999999987541 111 1222
Q ss_pred cCceeceEEEeeecCCCccEEEEEecccceEEE
Q 000944 1094 VGDVVTSLQKASLVPGGGESVIYGTVMGSLGAM 1126 (1213)
Q Consensus 1094 lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l 1126 (1213)
.+..|+++.- .+ +...++.++.+|.|...
T Consensus 305 ~~~~v~~~~~---s~-~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 305 ESSSVLSCDI---SV-DDKYIVTGSGDKKATVY 333 (337)
T ss_dssp CSSCEEEEEE---CT-TSCEEEEEETTSCEEEE
T ss_pred CCCcEEEEEE---CC-CCCEEEEecCCCeEEEE
Confidence 3455655442 22 34577888899998744
No 19
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.66 E-value=0.13 Score=58.86 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=74.3
Q ss_pred CCccEEEEEecCCEEEEEEeCCEEEEEEEccCC------CeEEeeeeccCcceEEEEeeecCCCceee---eEEEEEEeC
Q 000944 538 GKRTIVKVGSNRLQVVIALSGGELIYFEVDMTG------QLLEVEKHEMSGDVACLDIASVPEGRKRS---RFLAVGSYD 608 (1213)
Q Consensus 538 ~~~~I~~as~~~~~v~v~~s~~~l~~l~~~~~~------~l~~~~~~~l~~~is~i~i~~~~~~~~~~---~~l~v~~~~ 608 (1213)
....|.+.+...++++.+..+|.+.++.+.... .+..+. .-...|.|+++.+.. .... .++++|..|
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAI--ERDAFELCLVATTSFS 90 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEE--ETTTEEEEEEEEEETT
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEeccc--ccCCccccEEEEEcCC
Confidence 334688888888888888778999998876432 122221 234578999987520 0014 789999999
Q ss_pred CcEEEEEeCCCCc-----eeEeEEeecCCC--CceeEEEEeecccCCCCCCCCCCceE-EEEEeeCCeEEEEEEeC
Q 000944 609 NTIRILSLDPDDC-----MQILSVQSVSSP--PESLLFLEVQASVGGEDGADHPASLF-LNAGLQNGVLFRTVVDM 676 (1213)
Q Consensus 609 ~~i~i~sl~p~~~-----l~~~~~~~l~~~--p~Sl~~~~~~~~~~~~~~~~~~~~~~-Lligl~~G~l~~~~~~~ 676 (1213)
+.|.+|+++.... +..+. ..... ...+.-+.+.... .....+ |++|..||.+..|.+..
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-------~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASN-------DRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEC--CSCTTGGGSCEEEEEEECCC-----------CEEEEEEETTSCEEEEEEES
T ss_pred CCEEEEEccCCcccccccceeec--ccccccCCCcEEEEEEeecc-------CCCCceEEEEEeCCCcEEEEeCCc
Confidence 9999999954322 22111 11000 0222222222000 013456 88999999999998875
No 20
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.58 E-value=0.16 Score=56.53 Aligned_cols=105 Identities=5% Similarity=0.039 Sum_probs=57.4
Q ss_pred ccEEEEEEEEeCCceEEEEEEEe-ecC------cceEe--ccccCeEEEEeC--CeEEEEecC--CceeeceeeecCc-c
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQ-VEG------IPLAL--CQFQGRLLAGIG--PVLRLYDLG--KKRLLRKCENKLF-P 984 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~-~~g------~V~ai--~~~~g~ll~~~g--~~l~i~~~~--~~~l~~~~~~~~~-~ 984 (1213)
.|++.+|++.....+++...... .+. .+.++ .+-+.+|+++.. +.|.+|++. ..++......... .
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 278 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ 278 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence 47899999865322333332221 111 22233 333446765553 589999997 3333333322211 1
Q ss_pred ceEEEEEEeCCEEEEeec-CCcEEEEEEeccCCeEEEeec
Q 000944 985 NTIVSINTYRDRIYVGDI-QESFHFCKYRRDENQLYIFAD 1023 (1213)
Q Consensus 985 ~~i~~l~~~~~~I~vgD~-~~Sv~~l~~~~~~~~l~~~a~ 1023 (1213)
....+++..++++++++. -..+.+++++.+..++..++.
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence 122334445788999885 467888888876666666553
No 21
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.54 E-value=0.061 Score=60.58 Aligned_cols=230 Identities=11% Similarity=0.092 Sum_probs=119.6
Q ss_pred CccEEEEEecC-----CEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEE
Q 000944 539 KRTIVKVGSNR-----LQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRI 613 (1213)
Q Consensus 539 ~~~I~~as~~~-----~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i 613 (1213)
...|.+.+... .+++.+..+|.+.++.+...+......-..-...|.++++.+ ...++++|..|+.|.+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD------DGSKVFTASCDKTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT------TSSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc------CCCEEEEEcCCCcEEE
Confidence 34688888763 456666668899999887544332111122356799999865 3568889999999999
Q ss_pred EEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCC
Q 000944 614 LSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRP 693 (1213)
Q Consensus 614 ~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~p 693 (1213)
|+++.. .... ...-.....++.+.. .....+|+.|..||.+..|.+.. ++.. ...... .
T Consensus 113 wd~~~~-~~~~--~~~~~~~v~~~~~~~------------~~~~~~l~~~~~dg~i~vwd~~~--~~~~--~~~~~~-~- 171 (368)
T 3mmy_A 113 WDLSSN-QAIQ--IAQHDAPVKTIHWIK------------APNYSCVMTGSWDKTLKFWDTRS--SNPM--MVLQLP-E- 171 (368)
T ss_dssp EETTTT-EEEE--EEECSSCEEEEEEEE------------CSSCEEEEEEETTSEEEEECSSC--SSCS--EEEECS-S-
T ss_pred EEcCCC-Ccee--eccccCceEEEEEEe------------CCCCCEEEEccCCCcEEEEECCC--CcEE--EEEecC-C-
Confidence 999533 2211 111112223333211 12456788999999998877643 2111 111111 1
Q ss_pred CeEEEEEECCeeEEEEecCccEEEEEeCCe-EEEEecCc---cccceeeccccCC-CCceEEEEe-CCeEEEEEEccCCC
Q 000944 694 PKLFSVVVGGRAAMLCLSSRPWLGYIHRGR-FLLTPLSY---ETLEYAASFSSDQ-CVEGVVSVA-GNALRVFTIERLGE 767 (1213)
Q Consensus 694 v~l~~~~~~~~~~v~~~g~~p~~i~~~~~~-~~~~~~~~---~~v~~~~~f~~~~-~~~~~i~~~-~~~L~i~~l~~~~~ 767 (1213)
....+.......++++++....++..+.. ..+..+.. .....++-+.... .+++++..+ ++.+.+..+.....
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 172 -RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp -CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred -CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 11111222333455555666666654322 12222211 1122222222221 234455555 56888888776311
Q ss_pred eeEEEEEeCCC-------------ccceeeecCCCceEEEEE
Q 000944 768 TFNETALPLRY-------------TPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 768 ~~~~r~i~l~~-------------tp~~i~y~~~~~~~~v~~ 796 (1213)
......+.... .+..++++|..+.++.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 12223333222 477888888777666553
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.055 Score=62.40 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=63.7
Q ss_pred cEEEEEec--CC-EEEEEEeCCEEEEEEE----ccCCC-------eEEeeee-c-------cCcceEEEEeeecCCCcee
Q 000944 541 TIVKVGSN--RL-QVVIALSGGELIYFEV----DMTGQ-------LLEVEKH-E-------MSGDVACLDIASVPEGRKR 598 (1213)
Q Consensus 541 ~I~~as~~--~~-~v~v~~s~~~l~~l~~----~~~~~-------l~~~~~~-~-------l~~~is~i~i~~~~~~~~~ 598 (1213)
.|.+.+.. +. +++.+..++.+.++.+ . ++. ...+... . -...|+|+++.+ .
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~ 119 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH------D 119 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECT------T
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccC-CccccccccccccccccccccccccCCCCceEEEEEcC------C
Confidence 35555554 34 6776666788888887 4 333 1111110 0 133799999965 3
Q ss_pred eeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 599 SRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 599 ~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
..++++|..++.|.+|+. ....+..+ ......+.-+.+. ....+|+.+..||.+..|.+.
T Consensus 120 ~~~l~~~~~dg~i~i~~~-~~~~~~~~-----~~~~~~v~~~~~~-----------~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK-TGALLNVL-----NFHRAPIVSVKWN-----------KDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp SSEEEEEETTSCEEEEET-TSCEEEEE-----CCCCSCEEEEEEC-----------TTSSEEEEEETTCCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEeC-CCCeeeec-----cCCCccEEEEEEC-----------CCCCEEEEEecCCeEEEEECC
Confidence 578999999999999984 22222211 1111222222332 234578899999999888764
No 23
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.53 E-value=0.12 Score=60.58 Aligned_cols=173 Identities=9% Similarity=0.174 Sum_probs=109.0
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.-. ...+.++.. . ..++++|+. .|.|.+|++... ..+..+ .
T Consensus 260 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~----~~~l~~~~~------------d~~i~i~d~~~~-~~~~~~--~ 316 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGH-TNRVYSLQF---D----GIHVVSGSL------------DTSIRVWDVETG-NCIHTL--T 316 (445)
T ss_dssp CEEEEEGGGTEEEEEECCC-SSCEEEEEE---C----SSEEEEEET------------TSCEEEEETTTC-CEEEEE--C
T ss_pred EEEEEECCCCcEeEEecCC-CCceEEEEE---C----CCEEEEEeC------------CCeEEEEECCCC-CEEEEE--c
Confidence 5788888877777665432 234555543 2 357777764 467889988654 122221 2
Q ss_pred eecCcceEeccccCeEEEEe-CCeEEEEecCCceeeceeee-cCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 941 QVEGIPLALCQFQGRLLAGI-GPVLRLYDLGKKRLLRKCEN-KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~-g~~l~i~~~~~~~l~~~~~~-~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
...+.+.++..-+++++++. .+.|++|++...+....-.. ......+.++...++++++|..-..+.++.+.. ...+
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~ 395 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT-GEFI 395 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT-CCEE
T ss_pred CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC-Ccee
Confidence 34677788776666666655 45899999986654433221 113456888888899999999888888866543 2333
Q ss_pred EEe---eccCCCcceEEEEeecCCe-eeeecCCCc----EEEEecCC
Q 000944 1019 YIF---ADDSVPRWLTAAHHIDFDT-MAGADKFGN----IYFVRLPQ 1057 (1213)
Q Consensus 1019 ~~~---a~D~~~~~~~~~~~ld~~~-~l~~D~~gn----l~il~~~~ 1057 (1213)
..+ ........++++.+-.++. ++++..+|. +.++++++
T Consensus 396 ~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 396 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 333 1223344566666654444 567788887 99999876
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.53 E-value=0.08 Score=59.59 Aligned_cols=275 Identities=13% Similarity=0.141 Sum_probs=144.1
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|.|+++.+ ...+++.|..|++|.+|++.....+..+. .....+.-+.+. ....+|+
T Consensus 56 ~~v~~~~~s~------d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-----~~~~~v~~~~~s-----------~~~~~l~ 113 (340)
T 1got_B 56 AKIYAMHWGT------DSRLLLSASQDGKLIIWDSYTTNKVHAIP-----LRSSWVMTCAYA-----------PSGNYVA 113 (340)
T ss_dssp SCEEEEEECT------TSSEEEEEETTTEEEEEETTTCCEEEEEE-----CSSSCEEEEEEC-----------TTSSEEE
T ss_pred CceEEEEECC------CCCEEEEEeCCCcEEEEECCCCCcceEee-----cCCccEEEEEEC-----------CCCCEEE
Confidence 5688998864 35689999999999999984332222211 111112222332 2345788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeec-CCCCeEEEEEECCeeEEEEecCccEEEEEeC-CeEEEEecC--cccccee
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLG-LRPPKLFSVVVGGRAAMLCLSSRPWLGYIHR-GRFLLTPLS--YETLEYA 737 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~~~~v~~~g~~p~~i~~~~-~~~~~~~~~--~~~v~~~ 737 (1213)
.|..||.+..|.+....+..... ....| ..++.-..+.-++ ..+...++....++.-+ +... ..+. ...+.++
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~ 190 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSL 190 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEE-EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEE
T ss_pred EEeCCCeEEEEECccCCCcceeE-EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEE
Confidence 99999999888875432211111 11112 1222222222222 23333345555566532 2221 1111 1123222
Q ss_pred eccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEeC-CCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhh
Q 000944 738 ASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALPL-RYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECF 815 (1213)
Q Consensus 738 ~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 815 (1213)
+ |+.. ..-++..+ ++.+++-.+... -..+++.- ...+..++++|..+.++.+..+
T Consensus 191 ~-~~~~--~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d----------------- 247 (340)
T 1got_B 191 S-LAPD--TRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAFATGSDD----------------- 247 (340)
T ss_dssp E-ECTT--SSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSEEEEEETT-----------------
T ss_pred E-ECCC--CCEEEEEeCCCcEEEEECCCC---eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC-----------------
Confidence 1 2211 12233333 567777766542 23344432 3467788888887766655311
Q ss_pred HhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCC-ceEEEEEEEEecc
Q 000944 816 EAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDN-EAAFSICTVNFHD 894 (1213)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~-E~v~s~~~~~l~~ 894 (1213)
.+++++|..+.+.+..+..+.. ..+.+ +.+.
T Consensus 248 --------------------------------------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s- 279 (340)
T 1got_B 248 --------------------------------------------ATCRLFDLRADQELMTYSHDNIICGITS---VSFS- 279 (340)
T ss_dssp --------------------------------------------SCEEEEETTTTEEEEEECCTTCCSCEEE---EEEC-
T ss_pred --------------------------------------------CcEEEEECCCCcEEEEEccCCcccceEE---EEEC-
Confidence 1578888877776665544322 23444 3443
Q ss_pred CCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEE-Ee-CCeEEEEe
Q 000944 895 KEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLA-GI-GPVLRLYD 968 (1213)
Q Consensus 895 ~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~-~~-g~~l~i~~ 968 (1213)
....+++.|+. .|.|.+|++... ..+..+ ....++|++++-- +|.+++ |. ...|++|+
T Consensus 280 -~~g~~l~~g~~------------d~~i~vwd~~~~-~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 -KSGRLLLAGYD------------DFNCNVWDALKA-DRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -TTSSEEEEEET------------TSEEEEEETTTC-CEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCCEEEEECC------------CCeEEEEEcccC-cEeeEe--ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 33478888874 478999997653 223322 3467899988754 444444 33 34788885
No 25
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.52 E-value=0.045 Score=63.27 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=114.4
Q ss_pred EEEecCCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCcee
Q 000944 544 KVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQ 623 (1213)
Q Consensus 544 ~as~~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~ 623 (1213)
..+..+..++.+..++.+.++.+. ++.........-...|+|+++.+ ...++++|..+|.+.+|++.....+.
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSH------DGSFLSVGLGNGLVDIYDVESQTKLR 170 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEeecCCCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECC------CCCEEEEECCCCeEEEEECcCCeEEE
Confidence 344444445555578888888765 34443332233356799999965 35689999999999999985432222
Q ss_pred EeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEEC-
Q 000944 624 ILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG- 702 (1213)
Q Consensus 624 ~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~- 702 (1213)
.+. .....+.-+.+. ..+|+.|..||.+..|.+...... ...+....-....+...
T Consensus 171 ~~~-----~~~~~v~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 171 TMA-----GHQARVGCLSWN-------------RHVLSSGSRSGAIHHHDVRIANHQ-----IGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEC-----CCSSCEEEEEEE-------------TTEEEEEETTSEEEEEETTSSSCE-----EEEEECCSSCEEEEEECT
T ss_pred Eec-----CCCCceEEEEEC-------------CCEEEEEcCCCCEEEEecccCcce-----eeEEcCCCCCeeEEEEcC
Confidence 221 111122222222 247889999999988877532111 11111111112222222
Q ss_pred CeeEEEEec-CccEEEEEeC-CeEEEEec-CccccceeeccccCCCCceEEEE-e---CCeEEEEEEccCCCeeEEEEEe
Q 000944 703 GRAAMLCLS-SRPWLGYIHR-GRFLLTPL-SYETLEYAASFSSDQCVEGVVSV-A---GNALRVFTIERLGETFNETALP 775 (1213)
Q Consensus 703 ~~~~v~~~g-~~p~~i~~~~-~~~~~~~~-~~~~v~~~~~f~~~~~~~~~i~~-~---~~~L~i~~l~~~~~~~~~r~i~ 775 (1213)
....+++++ +....++.-+ +.....-. ....+.+++ |+.. ...++.. . ++.+++..+... -..+.+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~p~--~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~ 301 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA-WCPW--QSNLLATGGGTMDKQIHFWNAATG---ARVNTVD 301 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE-ECTT--STTEEEEECCTTTCEEEEEETTTC---CEEEEEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE-ECCC--CCCEEEEecCCCCCEEEEEECCCC---CEEEEEe
Confidence 222333333 3444455432 22221111 111232221 2111 1234433 2 568887777652 3567777
Q ss_pred CCCccceeeecCCCceEEEEE
Q 000944 776 LRYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 776 l~~tp~~i~y~~~~~~~~v~~ 796 (1213)
.+..+..++++|..+.+++++
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcEEEEEECCCCCeEEEEe
Confidence 888899999999888777653
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.52 E-value=0.055 Score=62.03 Aligned_cols=138 Identities=11% Similarity=0.170 Sum_probs=86.4
Q ss_pred CCeEEEEEEccCCCeeEEEEEeC-------CCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCC
Q 000944 754 GNALRVFTIERLGETFNETALPL-------RYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNG 826 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l-------~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1213)
++.+.+..+... -.++++.. ...++.++++|..+.+++++.+.
T Consensus 206 dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------------------------- 255 (397)
T 1sq9_A 206 NGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------------------------- 255 (397)
T ss_dssp TSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET---------------------------
T ss_pred CCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCC---------------------------
Confidence 467887777652 35666766 67888999999877766654210
Q ss_pred CcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcC------------CCceEEEEEEEEecc
Q 000944 827 NMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQ------------DNEAAFSICTVNFHD 894 (1213)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~------------~~E~v~s~~~~~l~~ 894 (1213)
. ...++++|..+++.+..+.-. ....+.++.. .
T Consensus 256 ------------------------------~-~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~- 300 (397)
T 1sq9_A 256 ------------------------------S-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF---N- 300 (397)
T ss_dssp ------------------------------T-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE---C-
T ss_pred ------------------------------C-CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE---C-
Confidence 0 147888898888777665531 3445555543 2
Q ss_pred CCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE-----ee---------------cCcceEeccccC
Q 000944 895 KEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT-----QV---------------EGIPLALCQFQG 954 (1213)
Q Consensus 895 ~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~-----~~---------------~g~V~ai~~~~g 954 (1213)
....+++.|+. .|.|.+|++... +....... .. .++|++++-..+
T Consensus 301 -~~~~~l~~~~~------------dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 301 -DSGETLCSAGW------------DGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp -SSSSEEEEEET------------TSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred -CCCCEEEEEeC------------CCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 23467877763 478999998653 22222220 23 788998877654
Q ss_pred -----------eEEEEe--CCeEEEEecCC
Q 000944 955 -----------RLLAGI--GPVLRLYDLGK 971 (1213)
Q Consensus 955 -----------~ll~~~--g~~l~i~~~~~ 971 (1213)
.++++. ...|++|++..
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccccccceEEEecCCCcEEEEEcCC
Confidence 354433 35899998864
No 27
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.09 Score=59.16 Aligned_cols=129 Identities=9% Similarity=0.073 Sum_probs=80.1
Q ss_pred EEEEEeCCC-CceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 861 CIRVLDPRS-ANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 861 ~i~l~d~~~-~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
.++++|..+ ++.+..+... ...+.++. +. ....++++|+. .|.|.+|++... + .+..
T Consensus 198 ~i~i~d~~~~~~~~~~~~~~-~~~v~~~~---~~--~~~~~l~~~~~------------d~~i~v~d~~~~--~--~~~~ 255 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSIDLH-EKSISDMQ---FS--PDLTYFITSSR------------DTNSFLVDVSTL--Q--VLKK 255 (369)
T ss_dssp EEEEEETTTTTEEEEEEECC-SSCEEEEE---EC--TTSSEEEEEET------------TSEEEEEETTTC--C--EEEE
T ss_pred EEEEEECCCCcEeEEEEecC-CCceeEEE---EC--CCCCEEEEecC------------CceEEEEECCCC--c--eeee
Confidence 678888877 5665555543 23455543 32 23467887763 478999988653 2 2223
Q ss_pred EeecCcceEeccc--cCeEEEEeCC---------------eEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEe
Q 000944 940 TQVEGIPLALCQF--QGRLLAGIGP---------------VLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVG 1000 (1213)
Q Consensus 940 ~~~~g~V~ai~~~--~g~ll~~~g~---------------~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vg 1000 (1213)
....+++.+++-- +.+++++.+. .+.+|+....+....... ....+.++.. .+++++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 256 YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp EECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEE
T ss_pred ecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--ccCcEEEEEECCCCCEEEEE
Confidence 3366777776543 4455655544 588888876655443222 2345666665 46799999
Q ss_pred ecCCcEEEEEEec
Q 000944 1001 DIQESFHFCKYRR 1013 (1213)
Q Consensus 1001 D~~~Sv~~l~~~~ 1013 (1213)
+.-..+.++.++.
T Consensus 334 ~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 334 GEDGFIRLHHFEK 346 (369)
T ss_dssp ETTSEEEEEEECH
T ss_pred cCCCeEEEEECcc
Confidence 9888888888764
No 28
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.064 Score=60.77 Aligned_cols=146 Identities=11% Similarity=0.080 Sum_probs=94.9
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEecccc---C-eEEEEe-CCeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQFQ---G-RLLAGI-GPVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~~---g-~ll~~~-g~~l~i~~~~~ 971 (1213)
..+++.|.. .|.|.+|++... +.+.+.. ....++|++++-.. + .|+++. ...|++|++..
T Consensus 69 ~~~l~s~~~------------dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 69 GTILASCSY------------DGKVLIWKEENG--RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp CSEEEEEET------------TSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred CCEEEEecc------------CCEEEEEEcCCC--ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 467777763 378999999875 4433333 34678898887653 3 444443 35899999986
Q ss_pred ceeeceeeecCccceEEEEEEe---------------CCEEEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEe
Q 000944 972 KRLLRKCENKLFPNTIVSINTY---------------RDRIYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHH 1035 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~---------------~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ 1035 (1213)
.+.............+.++... ++++++|..-..+.++..+........+. -..+...++++.+
T Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp TSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence 5332222222234456676653 68899999999999988876544433332 1224456777776
Q ss_pred ecC----CeeeeecCCCcEEEEecCC
Q 000944 1036 IDF----DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1036 ld~----~~~l~~D~~gnl~il~~~~ 1057 (1213)
-.. ..++.+..+|.+.+++...
T Consensus 215 sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 215 SPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 543 4578899999999998865
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.47 E-value=0.29 Score=57.47 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=99.6
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.- ....+.++.. . ...++++.|+. .|.|.+|++... ..+..+ .
T Consensus 291 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~--~~~~~l~sg~~------------dg~i~vwd~~~~-~~~~~~--~ 349 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSG-HTDRIYSTIY---D--HERKRCISASM------------DTTIRIWDLENG-ELMYTL--Q 349 (464)
T ss_dssp CEEEEETTTTEEEEEECC-CSSCEEEEEE---E--TTTTEEEEEET------------TSCEEEEETTTT-EEEEEE--C
T ss_pred eEEEEECCCCcEEEEecC-CCCCEEEEEE---c--CCCCEEEEEeC------------CCcEEEEECCCC-cEEEEE--e
Confidence 588888888777665532 2344555543 2 23467887764 467899988653 122222 2
Q ss_pred eecCcceEeccccCeEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEE
Q 000944 941 QVEGIPLALCQFQGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~ 1019 (1213)
...++|++++.-+.+|+++.. +.|++|++...+........ ....+.++...++++++|. -..+.+ |+-...++.
T Consensus 350 ~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-dg~i~i--wd~~~g~~~ 425 (464)
T 3v7d_B 350 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGS-ENQFNI--YNLRSGKLV 425 (464)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECT-TCCCEEEEEECSSEEEEEE-TTEEEE--EETTTCCEE
T ss_pred CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCC-CCccEEEEEeCCCEEEEec-CCeEEE--EECCCCcEE
Confidence 357888888866666666554 58999999865433332222 2456777888899999998 555655 554445554
Q ss_pred EeeccCCCcceEEEEeecCCe-eeeecCCCcEEE
Q 000944 1020 IFADDSVPRWLTAAHHIDFDT-MAGADKFGNIYF 1052 (1213)
Q Consensus 1020 ~~a~D~~~~~~~~~~~ld~~~-~l~~D~~gnl~i 1052 (1213)
..-.-.....++++.+ +++. +++++.+|..++
T Consensus 426 ~~~~~~~~~~v~~v~~-~~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 426 HANILKDADQIWSVNF-KGKTLVAAVEKDGQSFL 458 (464)
T ss_dssp ESCTTTTCSEEEEEEE-ETTEEEEEEEETTEEEE
T ss_pred ehhhccCCCcEEEEEe-cCCEEEEEEEeCCeEEE
Confidence 3211223445666666 3444 455666665544
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.46 E-value=0.0016 Score=76.85 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceE
Q 000944 580 MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLF 659 (1213)
Q Consensus 580 l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 659 (1213)
.+..|+|++..|. ...+|++|..||+|.||+++.......+....=.....++ .+.. ....+
T Consensus 118 ~~~~V~~l~~~P~-----~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l---~f~p----------~~~~~ 179 (435)
T 4e54_B 118 FDRRATSLAWHPT-----HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGL---KFNP----------LNTNQ 179 (435)
T ss_dssp CSSCEEEEEECSS-----CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEE---EECS----------SCTTE
T ss_pred CCCCEEEEEEeCC-----CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEE---EEeC----------CCCCE
Confidence 3456999999753 2468999999999999998533222211100000112233 2221 13457
Q ss_pred EEEEeeCCeEEEEEEe
Q 000944 660 LNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 660 Lligl~~G~l~~~~~~ 675 (1213)
|+.|..||.+..|.+.
T Consensus 180 l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 180 FYASSMEGTTRLQDFK 195 (435)
T ss_dssp EEEECSSSCEEEEETT
T ss_pred EEEEeCCCEEEEeecc
Confidence 8899999999888653
No 31
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.45 E-value=0.23 Score=63.20 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=139.1
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEE
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~L 660 (1213)
...|+|+++.+ ...++++|..+|.|.||++.....+..+. ..+..+..+.+.. ...+|
T Consensus 13 ~~~v~~i~~sp------~~~~la~~~~~g~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~-----------~~~~l 70 (814)
T 3mkq_A 13 SDRVKGIDFHP------TEPWVLTTLYSGRVEIWNYETQVEVRSIQ-----VTETPVRAGKFIA-----------RKNWI 70 (814)
T ss_dssp CSCEEEEEECS------SSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEEEG-----------GGTEE
T ss_pred CCceEEEEECC------CCCEEEEEeCCCEEEEEECCCCceEEEEe-----cCCCcEEEEEEeC-----------CCCEE
Confidence 35689999965 36789999999999999984332222211 1222222233332 34578
Q ss_pred EEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEEC-CeeEEEEec-CccEEEEEeC-CeEEEEec--Cccccc
Q 000944 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG-GRAAMLCLS-SRPWLGYIHR-GRFLLTPL--SYETLE 735 (1213)
Q Consensus 661 ligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~-~~~~v~~~g-~~p~~i~~~~-~~~~~~~~--~~~~v~ 735 (1213)
++|..||.+..|.+.. +.. ...+...+-....+... ..+.+++++ +....++.-+ +......+ ....+.
T Consensus 71 ~~~~~dg~i~vw~~~~--~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNT--GEK----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEETTSEEEEEETTT--CCE----EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEeCCCeEEEEECCC--CcE----EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 8999999998887643 221 11111111112222221 122233332 3344444422 11111111 111222
Q ss_pred eeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEeC--CCccceeeecC--CCceEEEEEccCCCCCHHHHHHH
Q 000944 736 YAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALPL--RYTPRRFVLQP--KKKLMVIIETDQGALTAEEREAA 810 (1213)
Q Consensus 736 ~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~l--~~tp~~i~y~~--~~~~~~v~~~~~~~~~~~~~~~~ 810 (1213)
++ .|+.. .++.++..+ ++.+.+..+... .. ..++.. ...+..++++| ..+.+++++.
T Consensus 145 ~~-~~~p~-~~~~l~~~~~dg~v~vwd~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------------- 206 (814)
T 3mkq_A 145 CV-AFNPK-DPSTFASGCLDRTVKVWSLGQS-TP--NFTLTTGQERGVNYVDYYPLPDKPYMITASD------------- 206 (814)
T ss_dssp EE-EEETT-EEEEEEEEETTSEEEEEETTCS-SC--SEEEECCCTTCCCEEEECCSTTCCEEEEECT-------------
T ss_pred EE-EEEcC-CCCEEEEEeCCCeEEEEECCCC-cc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeC-------------
Confidence 22 12210 012233333 567877776652 22 222322 25667777777 4444443321
Q ss_pred HHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEE
Q 000944 811 KKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTV 890 (1213)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~ 890 (1213)
-..++++|..+++.+..+.-. ...+.++.
T Consensus 207 ------------------------------------------------dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~-- 235 (814)
T 3mkq_A 207 ------------------------------------------------DLTIKIWDYQTKSCVATLEGH-MSNVSFAV-- 235 (814)
T ss_dssp ------------------------------------------------TSEEEEEETTTTEEEEEEECC-SSCEEEEE--
T ss_pred ------------------------------------------------CCEEEEEECCCCcEEEEEcCC-CCCEEEEE--
Confidence 026888888888776665432 23455543
Q ss_pred EeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC---eEEEEeCCeEEE
Q 000944 891 NFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG---RLLAGIGPVLRL 966 (1213)
Q Consensus 891 ~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g---~ll~~~g~~l~i 966 (1213)
+. ...+++++|+. .|.|.+|++... +..... ....++|.+++-. +| .++++....+.+
T Consensus 236 -~~--~~~~~l~~~~~------------dg~v~vwd~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 236 -FH--PTLPIIISGSE------------DGTLKIWNSSTY--KVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp -EC--SSSSEEEEEET------------TSCEEEEETTTC--SEEEEE-CCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred -Ec--CCCCEEEEEeC------------CCeEEEEECCCC--cEEEEe-ecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 32 23458887763 377889887643 222111 2235778887744 33 256667778888
Q ss_pred EecC
Q 000944 967 YDLG 970 (1213)
Q Consensus 967 ~~~~ 970 (1213)
|++.
T Consensus 298 ~~~~ 301 (814)
T 3mkq_A 298 LSLG 301 (814)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8765
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.44 E-value=0.075 Score=59.80 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK- 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~- 939 (1213)
.++++|..+++.+..+.- ....+.++.. .. ....+++.|+. .|.|.+|++... +......
T Consensus 96 ~i~v~d~~~~~~~~~~~~-~~~~i~~~~~---~~-~~~~~l~s~~~------------dg~i~iwd~~~~--~~~~~~~~ 156 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVG-HGNAINELKF---HP-RDPNLLLSVSK------------DHALRLWNIQTD--TLVAIFGG 156 (366)
T ss_dssp EEEEECTTTCCEEEEEES-CCSCEEEEEE---CS-SCTTEEEEEET------------TSCEEEEETTTT--EEEEEECS
T ss_pred EEEEEEchhceEeeeecC-CCCcEEEEEE---CC-CCCCEEEEEeC------------CCeEEEEEeecC--eEEEEecc
Confidence 688899888887776652 3345666543 21 13467887764 478999998654 3222221
Q ss_pred -EeecCcceEeccc-cC-eEEEEe-CCeEEEEecCCceeecee--------------------------eecCccceEEE
Q 000944 940 -TQVEGIPLALCQF-QG-RLLAGI-GPVLRLYDLGKKRLLRKC--------------------------ENKLFPNTIVS 989 (1213)
Q Consensus 940 -~~~~g~V~ai~~~-~g-~ll~~~-g~~l~i~~~~~~~l~~~~--------------------------~~~~~~~~i~~ 989 (1213)
....++|++++-- ++ +|+++. ...|++|++...+..... ........+.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 3467889888754 34 455443 358999999864332110 01112345667
Q ss_pred EEEeCCEEEEeecCCcEEEEEEeccCC------------e-EEEeeccCCCcceEEEEee-c--CCeeeeecCCCcEEEE
Q 000944 990 INTYRDRIYVGDIQESFHFCKYRRDEN------------Q-LYIFADDSVPRWLTAAHHI-D--FDTMAGADKFGNIYFV 1053 (1213)
Q Consensus 990 l~~~~~~I~vgD~~~Sv~~l~~~~~~~------------~-l~~~a~D~~~~~~~~~~~l-d--~~~~l~~D~~gnl~il 1053 (1213)
+...++++++|..-..+.++....... . +..+.. +...++++.+- + ...++.+..+|.|.++
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 777799999999988888877654322 1 222221 22223343332 3 4467778999999999
Q ss_pred ecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeec-CceeceEEEeeecCCCccEEEEEecccceEEE
Q 000944 1054 RLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHV-GDVVTSLQKASLVPGGGESVIYGTVMGSLGAM 1126 (1213)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l-g~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l 1126 (1213)
+...... .......-..|- ...|+++.- .+ +...++.++.+|.|...
T Consensus 315 d~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~---s~-~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 315 DLEVEDP----------------------HKAKCTTLTHHKCGAAIRQTSF---SR-DSSILIAVCDDASIWRW 362 (366)
T ss_dssp ECCSSSG----------------------GGCEEEEECCTTCCSCEEEEEE---CT-TSSEEEEEETTSEEEEE
T ss_pred ECCCCCC----------------------ccccceEEcccccCCceEEEEe---CC-CCCeEEEEeCCCEEEEE
Confidence 8865321 011111112221 345655543 23 44578889999998743
No 33
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.43 E-value=0.033 Score=62.79 Aligned_cols=171 Identities=7% Similarity=0.070 Sum_probs=107.7
Q ss_pred EEEEEeCCC-CceE-EEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE
Q 000944 861 CIRVLDPRS-ANTT-CLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH 938 (1213)
Q Consensus 861 ~i~l~d~~~-~~~~-~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~ 938 (1213)
.++++|..+ .+.+ ..+. .....+.+++. . ...++++.|+. .|.|.+|++... +...
T Consensus 65 ~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~---~--~~~~~l~s~~~------------dg~v~iwd~~~~--~~~~-- 122 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCW---S--DDGSKVFTASC------------DKTAKMWDLSSN--QAIQ-- 122 (368)
T ss_dssp EEEEEEECTTSCEEEEEEE-ECSSCEEEEEE---C--TTSSEEEEEET------------TSEEEEEETTTT--EEEE--
T ss_pred cEEEEEcCCCCceeEEEec-cccCCEEEEEE---C--cCCCEEEEEcC------------CCcEEEEEcCCC--Ccee--
Confidence 577777665 3333 2222 23345555543 2 23468887763 478999988754 3332
Q ss_pred EEeecCcceEecc---ccCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEec
Q 000944 939 KTQVEGIPLALCQ---FQGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 939 ~~~~~g~V~ai~~---~~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
.....++|++++- -++.++++. .+.|++|++...+...... .+..+.++....+.++++..-..+.++.++.
T Consensus 123 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 123 IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LPERCYCADVIYPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE---CSSCEEEEEEETTEEEEEEGGGCEEEEECSS
T ss_pred eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe---cCCCceEEEecCCeeEEEeCCCcEEEEEecc
Confidence 3457899999984 355554433 3689999998766544322 2346788888899999999999999987765
Q ss_pred cCCeEEEeeccCCCcceEEEEee-cCC----eeeeecCCCcEEEEecCC
Q 000944 1014 DENQLYIFADDSVPRWLTAAHHI-DFD----TMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1014 ~~~~l~~~a~D~~~~~~~~~~~l-d~~----~~l~~D~~gnl~il~~~~ 1057 (1213)
....+..+.. ..........+. +.. .++.+..+|.+.++....
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 200 QPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp SCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ccchhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 4444443332 223333333332 222 288899999999998865
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.40 E-value=0.025 Score=64.88 Aligned_cols=189 Identities=11% Similarity=0.066 Sum_probs=93.7
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEE
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~L 660 (1213)
...|.|+++.+. ...++++|..|+.|.+|+++.......+. +......+.-+.+.. .+..+|
T Consensus 73 ~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~----------~~~~~l 134 (383)
T 3ei3_B 73 DRRVTSLEWHPT-----HPTTVAVGSKGGDIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQ----------FNTNQL 134 (383)
T ss_dssp SSCEEEEEECSS-----CTTEEEEEEBTSCEEEEETTSTTCEEEEC---CCSTTCBEEEEEEET----------TEEEEE
T ss_pred CCCEEEEEECCC-----CCCEEEEEcCCCeEEEEeCCCcccceeee---cCCcCCceeEEEeCC----------CCCCEE
Confidence 367899988652 12689999999999999995332222211 111122222223321 135688
Q ss_pred EEEeeCCeEEEEEEeCCCCcccccceeeecC----CCCeEEEEEECCeeEEEEec-CccEEEEEeCCeEEEEec-Ccccc
Q 000944 661 NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGL----RPPKLFSVVVGGRAAMLCLS-SRPWLGYIHRGRFLLTPL-SYETL 734 (1213)
Q Consensus 661 ligl~~G~l~~~~~~~~~~~l~~~~~~~lG~----~pv~l~~~~~~~~~~v~~~g-~~p~~i~~~~~~~~~~~~-~~~~v 734 (1213)
+.|..||.+..|.+.. ..+ ....+. .++.-..+.-++ ..+++.+ +....++.-++.....-. ....+
T Consensus 135 ~s~~~d~~i~iwd~~~--~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSG--SVI----QVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEETTTEEEEEETTS--CEE----EEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSCEEEEEECSSSCE
T ss_pred EEEeCCCEEEEEECCC--Cce----EEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCCEEEEeccCCCcE
Confidence 9999999998887642 111 111111 112222121122 2222222 333444443332211111 11122
Q ss_pred ceeeccccCCCCceEEEEe-CCeEEEEEEccCC-CeeEEEEEeCCCccceeeecC-CCceEEEEE
Q 000944 735 EYAASFSSDQCVEGVVSVA-GNALRVFTIERLG-ETFNETALPLRYTPRRFVLQP-KKKLMVIIE 796 (1213)
Q Consensus 735 ~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~-~~~~~r~i~l~~tp~~i~y~~-~~~~~~v~~ 796 (1213)
.++ .|+... +.-++..+ ++.+++..+.... ..-..+.+.-...+..++++| ..+.++.++
T Consensus 208 ~~~-~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 208 THA-EFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEE-EECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred EEE-EECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 222 222110 11233333 5688888887631 123455566777889999999 766666554
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.21 Score=56.00 Aligned_cols=291 Identities=13% Similarity=0.148 Sum_probs=153.5
Q ss_pred ccEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeec-cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 540 RTIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 540 ~~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
..|.+.+.. +.+++.+..+|.+.++.+.. ++.. ..+. -...|.++++.+ ...+++++..|+.|.+|++
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~--~~~~~h~~~v~~~~~~~------~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERL--GTLDGHTGTIWSIDVDC------FTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTT-CCEE--EEECCCSSCEEEEEECT------TSSEEEEEETTTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhh--hhhhhcCCcEEEEEEcC------CCCEEEEEeCCCeEEEEEC
Confidence 457777665 45677676788888887653 3322 1222 246789999864 3568889999999999999
Q ss_pred CCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeC-----CeEEEEEEeCCCCcccccceeeecC
Q 000944 617 DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQN-----GVLFRTVVDMVTGQLSDSRSRFLGL 691 (1213)
Q Consensus 617 ~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~-----G~l~~~~~~~~~~~l~~~~~~~lG~ 691 (1213)
+....+.... .+..+.++ .+. ....+++++..+ |.+..|.+...... .. ......
T Consensus 104 ~~~~~~~~~~---~~~~v~~~---~~~-----------~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-~~--~~~~~~ 163 (369)
T 3zwl_B 104 SNGQCVATWK---SPVPVKRV---EFS-----------PCGNYFLAILDNVMKNPGSINIYEIERDSAT-HE--LTKVSE 163 (369)
T ss_dssp TTCCEEEEEE---CSSCEEEE---EEC-----------TTSSEEEEEECCBTTBCCEEEEEEEEECTTT-CC--EEEECS
T ss_pred CCCcEEEEee---cCCCeEEE---EEc-----------cCCCEEEEecCCccCCCCEEEEEEecCCccc-ee--eccccc
Confidence 5432222221 11222222 222 245578888888 99999988653211 00 011111
Q ss_pred CCC----------eEEEEEEC-CeeEEEEec-CccEEEEEeCC--eEE-EEecCccccceeeccccCCCCceEEEEe-CC
Q 000944 692 RPP----------KLFSVVVG-GRAAMLCLS-SRPWLGYIHRG--RFL-LTPLSYETLEYAASFSSDQCVEGVVSVA-GN 755 (1213)
Q Consensus 692 ~pv----------~l~~~~~~-~~~~v~~~g-~~p~~i~~~~~--~~~-~~~~~~~~v~~~~~f~~~~~~~~~i~~~-~~ 755 (1213)
.++ ....+... ....+++.+ +....++.-+. ... ........+.++ .|+.. ..-++..+ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~l~~~~~d~ 240 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM-QFSPD--LTYFITSSRDT 240 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE-EECTT--SSEEEEEETTS
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE-EECCC--CCEEEEecCCc
Confidence 111 11111221 112222222 33333444322 111 111111122222 12211 12344444 56
Q ss_pred eEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCC
Q 000944 756 ALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGD 835 (1213)
Q Consensus 756 ~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1213)
.+.+..+... -..+.+.....+..++++|..+.+++.+.+.... +.
T Consensus 241 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~------------------------ 286 (369)
T 3zwl_B 241 NSFLVDVSTL---QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKD-------VT------------------------ 286 (369)
T ss_dssp EEEEEETTTC---CEEEEEECSSCEEEEEECSSSSEEEEEECCC------------------------------------
T ss_pred eEEEEECCCC---ceeeeecCCCCceeEEecCCCceEEEeecCCCce-------EE------------------------
Confidence 7877777653 3456677778899999999998888876432110 00
Q ss_pred CCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCC
Q 000944 836 DENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKR 915 (1213)
Q Consensus 836 ~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~ 915 (1213)
.... ..-...++++|..+++.+..+.-. ...+.++. +. ...++++.|+.
T Consensus 287 -----------~~~~-----~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~---~s--~~~~~l~s~~~--------- 335 (369)
T 3zwl_B 287 -----------TTSA-----NEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVA---IS--PQGTSYASGGE--------- 335 (369)
T ss_dssp ------------------------CEEEEEETTTCCEEEEEECC-SSCEEEEE---EC--TTSSEEEEEET---------
T ss_pred -----------EEec-----CCCcceeEEEecCCCcchhheecc-cCcEEEEE---EC--CCCCEEEEEcC---------
Confidence 0000 011237899999888877665432 34555543 32 23467887763
Q ss_pred CCcccEEEEEEEEeC
Q 000944 916 NIVAGYIHIYRFVEE 930 (1213)
Q Consensus 916 ~~~~Gri~v~~i~~~ 930 (1213)
.|.|.+|++...
T Consensus 336 ---dg~v~iw~~~~~ 347 (369)
T 3zwl_B 336 ---DGFIRLHHFEKS 347 (369)
T ss_dssp ---TSEEEEEEECHH
T ss_pred ---CCeEEEEECccc
Confidence 478999999863
No 36
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.36 E-value=0.4 Score=55.97 Aligned_cols=170 Identities=11% Similarity=0.112 Sum_probs=110.9
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.- ....+.|+.. . ..++++|+. .|.|.+|++... ..+..+ .
T Consensus 220 ~i~~wd~~~~~~~~~~~~-~~~~v~~~~~---~----~~~l~~~~~------------dg~i~iwd~~~~-~~~~~~--~ 276 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLMG-HVAAVRCVQY---D----GRRVVSGAY------------DFMVKVWDPETE-TCLHTL--Q 276 (445)
T ss_dssp EEEEEESSSCCEEEEEEC-CSSCEEEEEE---C----SSCEEEEET------------TSCEEEEEGGGT-EEEEEE--C
T ss_pred EEEEEECCCCcEEEEEcC-CcccEEEEEE---C----CCEEEEEcC------------CCEEEEEECCCC-cEeEEe--c
Confidence 688889888877766543 2345555543 2 356777764 477889987653 112211 2
Q ss_pred eecCcceEeccccCeEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEE
Q 000944 941 QVEGIPLALCQFQGRLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLY 1019 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~ 1019 (1213)
...++|++++.-+.+++++. .+.|++|++...+..... ......+.++...++++++|..-..+.++..+. ...+.
T Consensus 277 ~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~ 353 (445)
T 2ovr_B 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELKDNILVSGNADSTVKIWDIKT-GQCLQ 353 (445)
T ss_dssp CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEE
T ss_pred CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC-CcEEE
Confidence 35688999887444555544 358999999876654332 223456788888999999999888888865532 23333
Q ss_pred Eeec-cCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1020 IFAD-DSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1020 ~~a~-D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.+.. ..+...++++.+ +.+.++.+..+|.|.+++...
T Consensus 354 ~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 354 TLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTT
T ss_pred EEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCC
Confidence 3332 234455666655 666788899999999998754
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.36 E-value=0.096 Score=58.74 Aligned_cols=179 Identities=11% Similarity=0.181 Sum_probs=105.1
Q ss_pred EEEEEeCCCCc-eEEEEEcCCCceEEEEEEEE---eccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE
Q 000944 861 CIRVLDPRSAN-TTCLLELQDNEAAFSICTVN---FHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL 936 (1213)
Q Consensus 861 ~i~l~d~~~~~-~~~~~~~~~~E~v~s~~~~~---l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~ 936 (1213)
.++++|..+.+ .+..+. .....+.++.... +. ...++++.|.. .|.|.+|++......+..
T Consensus 91 ~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s--~~~~~l~~~~~------------d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIG--EGAPEIVTGSR------------DGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC---CCCEEEEEET------------TSCEEEECTTSCSSCSEE
T ss_pred eEEEEeCCCCCccEEEEE-ecccceEEEeeccccccC--CCccEEEEEeC------------CCeEEEEeCCCCCCccee
Confidence 46666666554 333332 2334566664431 21 23457777753 467889988764212222
Q ss_pred EEE--EeecCcceEec------cccCeEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEE-----eCCEEEEeec
Q 000944 937 LHK--TQVEGIPLALC------QFQGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINT-----YRDRIYVGDI 1002 (1213)
Q Consensus 937 ~~~--~~~~g~V~ai~------~~~g~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~-----~~~~I~vgD~ 1002 (1213)
+.. .....+|++++ +-+..++++.. ..|++|++...+...... +...+.++.. .++++++|..
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEES
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECC
Confidence 211 11134777776 22334555544 589999998776643322 2345666665 4689999998
Q ss_pred CCcEEEEEEeccC--CeEEEeeccCCCcceEEEEeecCC--eeeeecCCCcEEEEecCC
Q 000944 1003 QESFHFCKYRRDE--NQLYIFADDSVPRWLTAAHHIDFD--TMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1003 ~~Sv~~l~~~~~~--~~l~~~a~D~~~~~~~~~~~ld~~--~~l~~D~~gnl~il~~~~ 1057 (1213)
-..+.++..+... ..+.......+...++++.+-.++ .++.+..+|.+.++++..
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 8889998775432 233322222345567777766544 467889999999999865
No 38
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.35 E-value=0.021 Score=63.94 Aligned_cols=183 Identities=10% Similarity=0.087 Sum_probs=92.6
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCce-eEeEEeecCCCCceeEEEEeecccCCCCCCCCCCce-E
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCM-QILSVQSVSSPPESLLFLEVQASVGGEDGADHPASL-F 659 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l-~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~-~ 659 (1213)
..|+|+++.+ ...++++|..|+.|.+|+++..... .......-.....++.+.. ... +
T Consensus 12 ~~v~~~~~s~------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~ 71 (342)
T 1yfq_A 12 DYISDIKIIP------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--------------NTDLQ 71 (342)
T ss_dssp SCEEEEEEEG------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--------------SSSEE
T ss_pred CcEEEEEEcC------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC--------------CCCcE
Confidence 5689999875 3568899999999999999544211 1111111112223333221 244 7
Q ss_pred EEEEeeCCeEEEEEE-eCCCCcccccceeeecC--CCCeEEEEEECCeeEEEEe-cCccEEEEEeCC----eEE--EEec
Q 000944 660 LNAGLQNGVLFRTVV-DMVTGQLSDSRSRFLGL--RPPKLFSVVVGGRAAMLCL-SSRPWLGYIHRG----RFL--LTPL 729 (1213)
Q Consensus 660 Lligl~~G~l~~~~~-~~~~~~l~~~~~~~lG~--~pv~l~~~~~~~~~~v~~~-g~~p~~i~~~~~----~~~--~~~~ 729 (1213)
|++|..||.+..|.+ .. +.. ..+.. ..-....+.......++++ .+....++.-+. ... -.++
T Consensus 72 l~~~~~dg~i~~wd~~~~--~~~-----~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGS--PSF-----QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSS--SSE-----EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccC--Cce-----EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 899999999988876 43 221 12211 1111221111111222222 233333442111 000 0001
Q ss_pred ---Cc-cccceeeccccCCCCceEEEEe-CCeEEEEEEcc-CCCeeEEEEEeCCCccceeeecC-CCceEEEEE
Q 000944 730 ---SY-ETLEYAASFSSDQCVEGVVSVA-GNALRVFTIER-LGETFNETALPLRYTPRRFVLQP-KKKLMVIIE 796 (1213)
Q Consensus 730 ---~~-~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~-~~~~~~~r~i~l~~tp~~i~y~~-~~~~~~v~~ 796 (1213)
.. ..+.+++ | .+++++..+ ++.+.+..+.. ..........+....++.++++| ..+.+++++
T Consensus 145 ~~~~~~~~v~~~~-~----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 145 NNTKVKNKIFTMD-T----NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSSCCCEEEEE-E----CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred eEEeeCCceEEEE-e----cCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 00 0111111 1 245555554 56888888876 43334445556677889999999 777777665
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.25 E-value=0.019 Score=65.43 Aligned_cols=90 Identities=4% Similarity=0.069 Sum_probs=56.2
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.... ..+.+++ +.. +...+++.|.. -|.|.+|++... + ++...
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~-~~v~~l~---~sp-~~~~~lasgs~------------D~~i~iwd~~~~--~--~~~~~ 308 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHS-QNITGLA---YSY-HSSPFLASISE------------DCTVAVLDADFS--E--VFRDL 308 (357)
T ss_dssp CEEEEESSCGGGCEEECCCS-SCEEEEE---ECS-SSSCCEEEEET------------TSCEEEECTTSC--E--EEEEC
T ss_pred ceeEEECCCCcEeEEEeccc-eeEEEEE---EcC-CCCCEEEEEeC------------CCEEEEEECCCC--c--EeEEC
Confidence 57888888777666554332 3455553 321 23467776642 367889987543 3 23334
Q ss_pred eecCcceEecc--ccCeEEEEeC--CeEEEEecCC
Q 000944 941 QVEGIPLALCQ--FQGRLLAGIG--PVLRLYDLGK 971 (1213)
Q Consensus 941 ~~~g~V~ai~~--~~g~ll~~~g--~~l~i~~~~~ 971 (1213)
...++|++|+- .++.++++.| .+|++|++..
T Consensus 309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 309 SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 57899999873 5676666554 5899999864
No 40
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.24 E-value=0.25 Score=57.27 Aligned_cols=299 Identities=10% Similarity=0.065 Sum_probs=145.5
Q ss_pred CCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCC
Q 000944 570 GQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGE 649 (1213)
Q Consensus 570 ~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~ 649 (1213)
+.+...........+.++++.+ ...+++.+..++.|.+|+++............+......+.-+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~------~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~------ 178 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID------NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP------ 178 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS------SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG------
T ss_pred CcceEEEEEcCCCCceEEEEeC------CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc------
Confidence 3455555556666677777754 2456666666889999998433222111110111111122222222
Q ss_pred CCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEEEEec--CccEEEEEeC-CeEEE
Q 000944 650 DGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLS--SRPWLGYIHR-GRFLL 726 (1213)
Q Consensus 650 ~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~g--~~p~~i~~~~-~~~~~ 726 (1213)
....+++.+..+|.+..|.++. ++.. ........++.-..+.- ....+++++ +....++..+ ++. .
T Consensus 179 -----~~~~~~~s~~~d~~v~~~d~~~--~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~-~ 247 (433)
T 3bws_A 179 -----EHNELWVSQMQANAVHVFDLKT--LAYK--ATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE-I 247 (433)
T ss_dssp -----GGTEEEEEEGGGTEEEEEETTT--CCEE--EEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE-E
T ss_pred -----CCCEEEEEECCCCEEEEEECCC--ceEE--EEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE-E
Confidence 1345677888899998777642 2211 11111111222222221 223444443 3334445422 222 1
Q ss_pred EecCcc-ccceeeccccCCCCce-EEEE-e---------CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEE
Q 000944 727 TPLSYE-TLEYAASFSSDQCVEG-VVSV-A---------GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVI 794 (1213)
Q Consensus 727 ~~~~~~-~v~~~~~f~~~~~~~~-~i~~-~---------~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v 794 (1213)
..+... .+.++ .|+ |++ .+++ + ++.+.+..+.. .-..+.+.....|+.++++|..+.+++
T Consensus 248 ~~~~~~~~~~~~-~~~----~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 248 RKTDKIGLPRGL-LLS----KDGKELYIAQFSASNQESGGGRLGIYSMDK---EKLIDTIGPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp EECCCCSEEEEE-EEC----TTSSEEEEEEEESCTTCSCCEEEEEEETTT---TEEEEEEEEEECEEEEEECSSTTEEEE
T ss_pred EEecCCCCceEE-EEc----CCCCEEEEEECCCCccccCCCeEEEEECCC---CcEEeeccCCCCcceEEECCCCCEEEE
Confidence 111111 11111 111 222 3333 2 23555555543 123445555567888999988776655
Q ss_pred EEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEE
Q 000944 795 IETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTC 874 (1213)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~ 874 (1213)
.... ...++++|..+++.+.
T Consensus 320 ~~~~------------------------------------------------------------~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 320 SDMC------------------------------------------------------------CSKIEVYDLKEKKVQK 339 (433)
T ss_dssp EETT------------------------------------------------------------TTEEEEEETTTTEEEE
T ss_pred EecC------------------------------------------------------------CCEEEEEECCCCcEEE
Confidence 5321 0268889988888776
Q ss_pred EEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCcc---CCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEecc
Q 000944 875 LLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQF---WPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQ 951 (1213)
Q Consensus 875 ~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~---~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~ 951 (1213)
.+.. ...+.++. +. ....+++++....... .--.....|+|++|++... ++.. .....+.+.+++-
T Consensus 340 ~~~~--~~~~~~~~---~s--~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~--~~~~~~~~~~~~~ 408 (433)
T 3bws_A 340 SIPV--FDKPNTIA---LS--PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--TVKE--FWEAGNQPTGLDV 408 (433)
T ss_dssp EEEC--SSSEEEEE---EC--TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--EEEE--EEECSSSEEEEEE
T ss_pred EecC--CCCCCeEE---Ec--CCCCEEEEEecCCCccccccccccccceEEEEEECCCC--cEEE--EecCCCCCceEEE
Confidence 6653 34455443 32 2345777776532100 0001233589999987543 3222 2233566777654
Q ss_pred c-cC-eEEEEe--CCeEEEEecC
Q 000944 952 F-QG-RLLAGI--GPVLRLYDLG 970 (1213)
Q Consensus 952 ~-~g-~ll~~~--g~~l~i~~~~ 970 (1213)
- +| +|+++. .+.|++|+++
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCCCEEEEEECCCCeEEEEEec
Confidence 3 34 555554 4689999875
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.24 E-value=0.17 Score=55.77 Aligned_cols=275 Identities=13% Similarity=0.130 Sum_probs=137.3
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|.|+++.+ ...+++.|..|+.+.+|++... .+.. .+......+.-+.+. ....+|+
T Consensus 24 ~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~-~~~~----~~~~h~~~v~~~~~~-----------~~~~~l~ 81 (312)
T 4ery_A 24 KAVSSVKFSP------NGEWLASSSADKLIKIWGAYDG-KFEK----TISGHKLGISDVAWS-----------SDSNLLV 81 (312)
T ss_dssp SCEEEEEECT------TSSEEEEEETTSCEEEEETTTC-CEEE----EECCCSSCEEEEEEC-----------TTSSEEE
T ss_pred CcEEEEEECC------CCCEEEEeeCCCeEEEEeCCCc-ccch----hhccCCCceEEEEEc-----------CCCCEEE
Confidence 5689999865 3568999999999999998432 2221 111111222222332 2346788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeec-CCCCeEEEEEECC-eeEEEEec-CccEEEEEeC-Ce-EEEEecCccccce
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLG-LRPPKLFSVVVGG-RAAMLCLS-SRPWLGYIHR-GR-FLLTPLSYETLEY 736 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG-~~pv~l~~~~~~~-~~~v~~~g-~~p~~i~~~~-~~-~~~~~~~~~~v~~ 736 (1213)
.|..||.+..|.+.. ++.. ...-| ..++ ..+.... .+.++.++ +....++.-+ ++ ....+....++.+
T Consensus 82 s~~~d~~i~vwd~~~--~~~~---~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 82 SASDDKTLKIWDVSS--GKCL---KTLKGHSNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEETTSEEEEEETTT--CCEE---EEEECCSSCE--EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EECCCCEEEEEECCC--CcEE---EEEcCCCCCE--EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 999999998887643 2110 11111 1122 2222221 22333332 4444455432 22 1111111122322
Q ss_pred eeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEeCC--CccceeeecCCCceEEEEEccCCCCCHHHHHHHHHH
Q 000944 737 AASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALPLR--YTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKE 813 (1213)
Q Consensus 737 ~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~l~--~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 813 (1213)
+ .|+.. ...++..+ ++.+++-.+... -..+++... .....++++|..+.++.++.+
T Consensus 155 ~-~~~~~--~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------- 213 (312)
T 4ery_A 155 V-HFNRD--GSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--------------- 213 (312)
T ss_dssp E-EECTT--SSEEEEEETTSCEEEEETTTC---CEEEEECCSSCCCEEEEEECTTSSEEEEEETT---------------
T ss_pred E-EEcCC--CCEEEEEeCCCcEEEEECCCC---ceeeEEeccCCCceEEEEECCCCCEEEEEcCC---------------
Confidence 2 12211 12233333 567777766542 223343222 345667788877665554311
Q ss_pred hhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEec
Q 000944 814 CFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893 (1213)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~ 893 (1213)
..++++|..+++.+..+.-..++.......+..
T Consensus 214 ----------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 246 (312)
T 4ery_A 214 ----------------------------------------------NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV- 246 (312)
T ss_dssp ----------------------------------------------TEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC-
T ss_pred ----------------------------------------------CeEEEEECCCCcEEEEEEecCCceEEEEEEEEe-
Confidence 268888888777766655433332111111111
Q ss_pred cCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCe-EEEEe---CCeEEEEe
Q 000944 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGR-LLAGI---GPVLRLYD 968 (1213)
Q Consensus 894 ~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~-ll~~~---g~~l~i~~ 968 (1213)
....+++.|.. .|.|.+|++... ..++.+ ....++|.+++-- .+. ++.+. ...|++|+
T Consensus 247 --~~~~~l~sg~~------------dg~i~vwd~~~~-~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 247 --TGGKWIVSGSE------------DNLVYIWNLQTK-EIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp --SSSCEEEECCT------------TSCEEEEETTTC-CEEEEE--CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred --CCCcEEEEECC------------CCEEEEEECCCc-hhhhhh--hccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 23467776653 477999998653 122222 2346778776543 344 44443 35799998
Q ss_pred cC
Q 000944 969 LG 970 (1213)
Q Consensus 969 ~~ 970 (1213)
.+
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.21 E-value=0.2 Score=56.14 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCccEEEEEec------CCEEEEEEeCCEEEEEEEccCCCeEEeeeec---cCcceEEEEeeecCCCceeeeEEEEEEeC
Q 000944 538 GKRTIVKVGSN------RLQVVIALSGGELIYFEVDMTGQLLEVEKHE---MSGDVACLDIASVPEGRKRSRFLAVGSYD 608 (1213)
Q Consensus 538 ~~~~I~~as~~------~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~---l~~~is~i~i~~~~~~~~~~~~l~v~~~~ 608 (1213)
....|.+.+.. +..++.+.+++.+.++.+...+.+..+.... -...|.|+++.+.. .....++++|..|
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~l~~~~~d 94 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS--NTSHPLLAVAGSR 94 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT--TTCCEEEEEEETT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC--CCCCCEEEEecCC
Confidence 34568888877 4566667678899988887544444443222 34679999997632 1125789999999
Q ss_pred CcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 609 NTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 609 ~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
|.|.+|+++....+..+. .....+.-+.+.. ....+|+.|..||.+..|.+.
T Consensus 95 g~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~----------~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYV-----GHGNAINELKFHP----------RDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CEEEEECTTTCCEEEEEE-----SCCSCEEEEEECS----------SCTTEEEEEETTSCEEEEETT
T ss_pred CEEEEEEchhceEeeeec-----CCCCcEEEEEECC----------CCCCEEEEEeCCCeEEEEEee
Confidence 999999985332222221 1112222223321 134578899999999888764
No 43
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.19 E-value=0.4 Score=53.18 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=64.2
Q ss_pred EEEEE-EeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeC-CcEEEEEeCCC-CceeEeEE
Q 000944 551 QVVIA-LSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYD-NTIRILSLDPD-DCMQILSV 627 (1213)
Q Consensus 551 ~v~v~-~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~-~~i~i~sl~p~-~~l~~~~~ 627 (1213)
+++++ ..++.+.++.++.++++..+........+.++++.+ ...+++++..+ +.+.+|.++++ ..+..+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP------DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT------TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC------CCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 34444 236788888887566665555555566788888864 24567777774 89999999643 34444433
Q ss_pred eecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEe-eCCeEEEEEEe
Q 000944 628 QSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGL-QNGVLFRTVVD 675 (1213)
Q Consensus 628 ~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl-~~G~l~~~~~~ 675 (1213)
......|.++.+. ....+|+++. .+|.+..|.++
T Consensus 80 ~~~~~~~~~~~~s--------------~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 80 SALPGSLTHISTD--------------HQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp EECSSCCSEEEEC--------------TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccCCCCcEEEEc--------------CCCCEEEEEecCCCeEEEEECC
Confidence 3333345555432 1233455554 58888888875
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.18 Score=58.72 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=98.7
Q ss_pred eEEEEEcC---CCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE-eecCcce
Q 000944 872 TTCLLELQ---DNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT-QVEGIPL 947 (1213)
Q Consensus 872 ~~~~~~~~---~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~-~~~g~V~ 947 (1213)
.+..+.+. ..+.+.++.... . ....+++.|+. .|.|.+|++... +....... ...++|+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~------------d~~i~iwd~~~~--~~~~~~~~~~h~~~v~ 218 (437)
T 3gre_A 156 CIRKINLKNFGKNEYAVRMRAFV--N-EEKSLLVALTN------------LSRVIIFDIRTL--ERLQIIENSPRHGAVS 218 (437)
T ss_dssp EEEEEEGGGGSSCCCEEEEEEEE--C-SSCEEEEEEET------------TSEEEEEETTTC--CEEEEEECCGGGCCEE
T ss_pred eeEEEEccCcccccCceEEEEEE--c-CCCCEEEEEeC------------CCeEEEEeCCCC--eeeEEEccCCCCCceE
Confidence 44555665 356666665432 1 33578888874 478999998653 32222222 2578999
Q ss_pred Eeccc-cCe-EEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEEe------CCEEEEeecCCcEEEEEEeccCCeE
Q 000944 948 ALCQF-QGR-LLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINTY------RDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 948 ai~~~-~g~-ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~------~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
+++-- ++. |+++.. ..|++|++...+.+...... ....+.++... +.+++.|..-..+.++..+ ..+.
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~ 295 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV--KGHC 295 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT--TTEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC--CCcE
Confidence 88753 344 444443 47999999877665443222 23467777443 2377777776667775543 2222
Q ss_pred -EEee-c-----------------------cCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1019 -YIFA-D-----------------------DSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1019 -~~~a-~-----------------------D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
..+. . +.+...++++.+-+...++.+..+|.|.+++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence 1111 1 1134446666666555678899999999999765
No 45
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.36 Score=52.69 Aligned_cols=214 Identities=12% Similarity=-0.009 Sum_probs=106.6
Q ss_pred ccEEEEEec-CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCC
Q 000944 540 RTIVKVGSN-RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDP 618 (1213)
Q Consensus 540 ~~I~~as~~-~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p 618 (1213)
..|.+.+.. +.+++.+..+|.+.++.+.. +..... ...-...|.++++.+ ...++++|..++.+.+|.+..
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~-~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDD-QWLGTV-VYTGQGFLNSVCYDS------EKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESS-SEEEEE-EEECSSCEEEEEEET------TTTEEEEEETTSCEEEEETTC
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCC-CEEEEE-eecCCccEEEEEECC------CCCEEEEecCCCeEEEEEeee
Confidence 346666553 56777777788999988753 322221 112257789999875 356899999999999999843
Q ss_pred CCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEE
Q 000944 619 DDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFS 698 (1213)
Q Consensus 619 ~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~ 698 (1213)
....+.+. .+......+.-+.+. ..+|+.|..||.+..|. .+.. .........++.-..
T Consensus 91 ~~~~~~~~--~~~~~~~~i~~~~~~-------------~~~l~~~~~d~~i~~~d----~~~~--~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 91 TSGEDPLY--TLIGHQGNVCSLSFQ-------------DGVVISGSWDKTAKVWK----EGSL--VYNLQAHNASVWDAK 149 (313)
T ss_dssp CTTSCC-C--EECCCSSCEEEEEEE-------------TTEEEEEETTSEEEEEE----TTEE--EEEEECCSSCEEEEE
T ss_pred cCCCCccc--chhhcccCEEEEEec-------------CCEEEEEeCCCCEEEEc----CCcE--EEecccCCCceeEEE
Confidence 22111111 111111122212222 23688999999998886 1111 011111122322221
Q ss_pred EEE-CCeeEEEEecCccEEEEEeCCeEEEEec-CccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe
Q 000944 699 VVV-GGRAAMLCLSSRPWLGYIHRGRFLLTPL-SYETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP 775 (1213)
Q Consensus 699 ~~~-~~~~~v~~~g~~p~~i~~~~~~~~~~~~-~~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~ 775 (1213)
+.. ++...+.+..+....++........... ....+.++ .|+.. ..++..+ ++.+.+..+... -.++++.
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~-~~~~~---~~~~~~~~dg~i~i~d~~~~---~~~~~~~ 222 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHL-AVVDD---GHFISCSNDGLIKLVDMHTG---DVLRTYE 222 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEE-EEEET---TEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEE-EEcCC---CeEEEccCCCeEEEEECCch---hhhhhhh
Confidence 211 2322222233444555553222222221 11122222 22221 1244333 567777777652 2344444
Q ss_pred -CCCccceeeecCCC
Q 000944 776 -LRYTPRRFVLQPKK 789 (1213)
Q Consensus 776 -l~~tp~~i~y~~~~ 789 (1213)
-...+..++++|..
T Consensus 223 ~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 223 GHESFVYCIKLLPNG 237 (313)
T ss_dssp CCSSCEEEEEECTTS
T ss_pred cCCceEEEEEEecCC
Confidence 34567788888876
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0012 Score=76.88 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=82.8
Q ss_pred EEEEEeCCCCceEEEEEcCC-----CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEE
Q 000944 861 CIRVLDPRSANTTCLLELQD-----NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLE 935 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~-----~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~ 935 (1213)
.++++|..+.+.+..+.... ...+.++.. .. .+..++++|+.-. ..|.|.+|++......++
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~-~~~~~l~~~~~d~---------~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW---HP-KNSTRVATATGSD---------NDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE---CS-SCTTEEEEEECCS---------SSCCCCEEETTSTTSCSB
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEE---CC-CCCCEEEEEECCC---------CCceEEEEeCCCCCCCcE
Confidence 58888888888777776653 455666543 21 2345777776421 134788998876421111
Q ss_pred EEEEEeecCcceEeccc--cCeEEE-Ee-CCeEEEEecCCceeeceeeecCccceEEEEEEe--C-CEEEEeecCCcEEE
Q 000944 936 LLHKTQVEGIPLALCQF--QGRLLA-GI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY--R-DRIYVGDIQESFHF 1008 (1213)
Q Consensus 936 ~~~~~~~~g~V~ai~~~--~g~ll~-~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~--~-~~I~vgD~~~Sv~~ 1008 (1213)
.+ .....++|++++-. ++.+++ +. ...|++|++...+.+..... ....+.++... + .+++.|..-..+.+
T Consensus 256 ~~-~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~i 332 (416)
T 2pm9_A 256 TL-NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEV 332 (416)
T ss_dssp CC-CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred Ee-ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence 11 11356888888753 455444 33 35899999987655443222 23345555543 4 68888888888888
Q ss_pred EEEec
Q 000944 1009 CKYRR 1013 (1213)
Q Consensus 1009 l~~~~ 1013 (1213)
+..+.
T Consensus 333 w~~~~ 337 (416)
T 2pm9_A 333 QTLQN 337 (416)
T ss_dssp EESCC
T ss_pred EEccC
Confidence 77654
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.14 E-value=0.37 Score=55.43 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=101.1
Q ss_pred EEEEEeCCCCceEEEEEcC--CCceEEEEEEEEecc----------------CCCceEEEEEeeecCccCCCCCCcccEE
Q 000944 861 CIRVLDPRSANTTCLLELQ--DNEAAFSICTVNFHD----------------KEHGTLLAVGTAKGLQFWPKRNIVAGYI 922 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~--~~E~v~s~~~~~l~~----------------~~~~~~i~VGT~~~~~~~~e~~~~~Gri 922 (1213)
.++++|..+++.+..+... ....+.++....-.. .....++++|+. .|.|
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------dg~i 271 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV------------SGVI 271 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET------------TSCE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC------------CCeE
Confidence 5778888777777666542 334555554422100 123478888764 4778
Q ss_pred EEEEEEeCCceEEEEEEEeecCcceEecccc-C--eEEEEeC-CeEEEEecCCce-eeceeeecCccceEEEEEEe-CCE
Q 000944 923 HIYRFVEEGKSLELLHKTQVEGIPLALCQFQ-G--RLLAGIG-PVLRLYDLGKKR-LLRKCENKLFPNTIVSINTY-RDR 996 (1213)
Q Consensus 923 ~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~-g--~ll~~~g-~~l~i~~~~~~~-l~~~~~~~~~~~~i~~l~~~-~~~ 996 (1213)
.+|++... +..........++|++++--. + +|+++.. ..|++|++...+ ........ ....+.++... +++
T Consensus 272 ~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 348 (420)
T 3vl1_A 272 TVHNVFSK--EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYFAAGAL 348 (420)
T ss_dssp EEEETTTC--CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEEETTEE
T ss_pred EEEECCCC--ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEeCCCCE
Confidence 99988654 222222234567888887653 3 4555444 589999998643 22222221 23356666554 457
Q ss_pred EEEeecCCcEEEEEEeccC--Ce------EEEeeccCCCcceEEEEee-cCC---eeeeecCCCcEEEEecC
Q 000944 997 IYVGDIQESFHFCKYRRDE--NQ------LYIFADDSVPRWLTAAHHI-DFD---TMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 997 I~vgD~~~Sv~~l~~~~~~--~~------l~~~a~D~~~~~~~~~~~l-d~~---~~l~~D~~gnl~il~~~ 1056 (1213)
++.|..-..+.++...... .. ...+.. ....++++.+. |.. .++++...|.+.+|+..
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS--NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC--SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEEecCCccEEEEeccCCCCCccceeccCccEEcc--CCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 7778777788887775421 11 111111 12234455554 333 47888888888887753
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.13 E-value=0.45 Score=54.75 Aligned_cols=312 Identities=13% Similarity=0.097 Sum_probs=155.7
Q ss_pred cCCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEE
Q 000944 548 NRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSV 627 (1213)
Q Consensus 548 ~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~ 627 (1213)
.+.+++.+..++.+.++..... . ...... ...+.++...+. ...++++|..++.+.+|+++.. .. ..
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~-~--~~~~~~-~~~~~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~-~~--~~- 133 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIR-D--GSKMLK-RADYTAVDTAKL-----QMRRFILGTTEGDIKVLDSNFN-LQ--RE- 133 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSE-E--TTTTSC-SCCEEEEEEECS-----SSCEEEEEETTSCEEEECTTSC-EE--EE-
T ss_pred cCCeEEEEEcCCcEEEEEeccc-c--eeeEEe-cCCceEEEEEec-----CCCEEEEEECCCCEEEEeCCCc-ce--ee-
Confidence 4556666667888888765421 0 001111 234555544331 3568999999999999998432 11 11
Q ss_pred eecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECCeeEE
Q 000944 628 QSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAM 707 (1213)
Q Consensus 628 ~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v 707 (1213)
.+......+.-+.+. ....+|+.|..||.+..|.+.. ++.. ....--..++.-..+.-++...+
T Consensus 134 -~~~~h~~~v~~~~~~-----------~~~~~l~s~s~d~~i~iwd~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 134 -IDQAHVSEITKLKFF-----------PSGEALISSSQDMQLKIWSVKD--GSNP--RTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp -ETTSSSSCEEEEEEC-----------TTSSEEEEEETTSEEEEEETTT--CCCC--EEEECCSSCEEEEEEETTTTEEE
T ss_pred -ecccccCccEEEEEC-----------CCCCEEEEEeCCCeEEEEeCCC--CcCc--eEEcCCCCcEEEEEEcCCCCEEE
Confidence 111222222222332 1345789999999998887653 2111 11110112222221211222222
Q ss_pred EEecCccEEEEEeC-CeEEEEecCc-----cccceee---------------ccccCC-CCce-EE-EEe-CCeEEEEEE
Q 000944 708 LCLSSRPWLGYIHR-GRFLLTPLSY-----ETLEYAA---------------SFSSDQ-CVEG-VV-SVA-GNALRVFTI 762 (1213)
Q Consensus 708 ~~~g~~p~~i~~~~-~~~~~~~~~~-----~~v~~~~---------------~f~~~~-~~~~-~i-~~~-~~~L~i~~l 762 (1213)
.+..+....++.-+ ++... .+.. ..+.+++ +..... .|++ ++ ..+ ++.+++..+
T Consensus 198 s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIH-TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp EEETTSCEEEEETTTTEEEE-EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred EEcCCCcEEEeECCCCceeE-EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 22334555566532 22211 1110 1111111 111111 1333 33 333 567888777
Q ss_pred ccCCCeeEEEEEeC--CCccceeeecCCCc-eEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCC
Q 000944 763 ERLGETFNETALPL--RYTPRRFVLQPKKK-LMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENK 839 (1213)
Q Consensus 763 ~~~~~~~~~r~i~l--~~tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1213)
... -...+++. ...+..++++|..+ .++.++.+
T Consensus 277 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----------------------------------------- 312 (420)
T 3vl1_A 277 FSK---EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN----------------------------------------- 312 (420)
T ss_dssp TTC---CEEEEECCTTSSCEEEEEECSSCTTEEEEEETT-----------------------------------------
T ss_pred CCC---ceeEEcccccCCCceeEEEeCCCCCEEEEEeCC-----------------------------------------
Confidence 653 23344433 35678888888877 44443210
Q ss_pred CCCCCccccCCCCCCCCceeeEEEEEeCCCCce-EEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCc
Q 000944 840 YDPLSDEQYGYPKAESDKWVSCIRVLDPRSANT-TCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIV 918 (1213)
Q Consensus 840 ~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~-~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~ 918 (1213)
..++++|..+++. +..+.......+.++.. . ...+++.|+.
T Consensus 313 --------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~---~---~~~~l~s~~~------------ 354 (420)
T 3vl1_A 313 --------------------GMLAQWDLRSPECPVGEFLINEGTPINNVYF---A---AGALFVSSGF------------ 354 (420)
T ss_dssp --------------------SEEEEEETTCTTSCSEEEEESTTSCEEEEEE---E---TTEEEEEETT------------
T ss_pred --------------------CeEEEEEcCCCcCchhhhhccCCCCceEEEe---C---CCCEEEEecC------------
Confidence 2688888877643 55565555666666632 2 2357776653
Q ss_pred ccEEEEEEEEeCCc--eEE----EEEEEeecCcceEeccc-cC----eEEE-EeCCeEEEEecCC
Q 000944 919 AGYIHIYRFVEEGK--SLE----LLHKTQVEGIPLALCQF-QG----RLLA-GIGPVLRLYDLGK 971 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~--kl~----~~~~~~~~g~V~ai~~~-~g----~ll~-~~g~~l~i~~~~~ 971 (1213)
.|++.+|++..... .+. ........+.|.+++-. ++ +|++ +....+.+|++++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 48899999987421 111 11122446778777632 23 3444 4445788898865
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.12 E-value=0.49 Score=53.20 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEe-----------------CCceEEEEEEEeec
Q 000944 881 NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE-----------------EGKSLELLHKTQVE 943 (1213)
Q Consensus 881 ~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~-----------------~~~kl~~~~~~~~~ 943 (1213)
...+.++.. . ....++++|+. .|.+.+|++.. .+..+..+ ....
T Consensus 142 ~~~i~~~~~---~--~~~~~l~~~~~------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 202 (372)
T 1k8k_C 142 RSTVLSLDW---H--PNSVLLAAGSC------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSC 202 (372)
T ss_dssp CSCEEEEEE---C--TTSSEEEEEET------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCS
T ss_pred CCCeeEEEE---c--CCCCEEEEEcC------------CCCEEEEEcccccccccccccccccccchhhheEec--CCCC
Confidence 445555543 2 23467887763 47788999742 11112211 1456
Q ss_pred CcceEeccc-cC-eEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 944 GIPLALCQF-QG-RLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 944 g~V~ai~~~-~g-~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
++|++++-- ++ +|+++.. ..|++|++...+.+..-.. ....+.++.. .+.++++| .-..+.++..+...+++
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE
Confidence 788888664 34 5555443 5899999986655443222 2334555544 45667777 77789888887522322
Q ss_pred EEe--------------------------------------eccCCCcceEEEEeecC-----CeeeeecCCCcEEEEec
Q 000944 1019 YIF--------------------------------------ADDSVPRWLTAAHHIDF-----DTMAGADKFGNIYFVRL 1055 (1213)
Q Consensus 1019 ~~~--------------------------------------a~D~~~~~~~~~~~ld~-----~~~l~~D~~gnl~il~~ 1055 (1213)
..+ -...+...++++.+... ..++.+..+|.|.++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 221 11234556777765533 46788999999999987
Q ss_pred CC
Q 000944 1056 PQ 1057 (1213)
Q Consensus 1056 ~~ 1057 (1213)
..
T Consensus 360 ~~ 361 (372)
T 1k8k_C 360 RS 361 (372)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.11 E-value=0.15 Score=56.76 Aligned_cols=227 Identities=12% Similarity=0.086 Sum_probs=133.9
Q ss_pred EEEEe-CCeEEEEEEccCCCeeEEE-EEeCCCccceeeecCCCc-eEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCC
Q 000944 749 VVSVA-GNALRVFTIERLGETFNET-ALPLRYTPRRFVLQPKKK-LMVIIETDQGALTAEEREAAKKECFEAAGMGENGN 825 (1213)
Q Consensus 749 ~i~~~-~~~L~i~~l~~~~~~~~~r-~i~l~~tp~~i~y~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1213)
++..+ ++.+++..+.........+ .......+..++++|..+ .++.++.+
T Consensus 26 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------- 78 (342)
T 1yfq_A 26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ--------------------------- 78 (342)
T ss_dssp EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT---------------------------
T ss_pred EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC---------------------------
Confidence 33333 5788888887642122222 234556788899988877 55555421
Q ss_pred CCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeC-CCCceEEEEEcC---CCceEEEEEEEEeccCCCceEE
Q 000944 826 GNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDP-RSANTTCLLELQ---DNEAAFSICTVNFHDKEHGTLL 901 (1213)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~-~~~~~~~~~~~~---~~E~v~s~~~~~l~~~~~~~~i 901 (1213)
+.++++|. .+.+. ..+. ....+.++.. . . ..++
T Consensus 79 ----------------------------------g~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~---~--~-~~~l 115 (342)
T 1yfq_A 79 ----------------------------------GEILKVDLIGSPSF---QALTNNEANLGICRICK---Y--G-DDKL 115 (342)
T ss_dssp ----------------------------------SCEEEECSSSSSSE---EECBSCCCCSCEEEEEE---E--T-TTEE
T ss_pred ----------------------------------CeEEEEEeccCCce---EeccccCCCCceEEEEe---C--C-CCEE
Confidence 14667776 55544 2222 3345556543 2 2 4577
Q ss_pred EEEeeecCccCCCCCCcccEEEEEEEEeC-Cce----EEEEEEEeecCcceEeccccCeEEEEeC-CeEEEEecCC-cee
Q 000944 902 AVGTAKGLQFWPKRNIVAGYIHIYRFVEE-GKS----LELLHKTQVEGIPLALCQFQGRLLAGIG-PVLRLYDLGK-KRL 974 (1213)
Q Consensus 902 ~VGT~~~~~~~~e~~~~~Gri~v~~i~~~-~~k----l~~~~~~~~~g~V~ai~~~~g~ll~~~g-~~l~i~~~~~-~~l 974 (1213)
+.|+. .|.|.+|++... +.. .+.+.....++.|++++...+.++++.. ..|++|++.. .+.
T Consensus 116 ~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 116 IAASW------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEET------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred EEEcC------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc
Confidence 77653 478899987641 000 1122223367889998887777766554 4899999986 332
Q ss_pred eceeeecCccceEEEEEE---eCCEEEEeecCCcEEEEEEecc-----CCeEEEeeccC-------CCcceEEEEeec-C
Q 000944 975 LRKCENKLFPNTIVSINT---YRDRIYVGDIQESFHFCKYRRD-----ENQLYIFADDS-------VPRWLTAAHHID-F 1038 (1213)
Q Consensus 975 ~~~~~~~~~~~~i~~l~~---~~~~I~vgD~~~Sv~~l~~~~~-----~~~l~~~a~D~-------~~~~~~~~~~ld-~ 1038 (1213)
............+.++.. .++++++|.....+.++.++.. ......+.... +...++++.+-. .
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 111111113445666665 4689999999888999888765 12222222111 123677776653 3
Q ss_pred CeeeeecCCCcEEEEecCC
Q 000944 1039 DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1039 ~~~l~~D~~gnl~il~~~~ 1057 (1213)
..++.+..+|.|.+++...
T Consensus 264 ~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp CCEEEEETTSCEEEEETTT
T ss_pred CEEEEecCCceEEEEcCcc
Confidence 4578889999999998653
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.10 E-value=0.041 Score=61.88 Aligned_cols=177 Identities=11% Similarity=0.145 Sum_probs=106.0
Q ss_pred eEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCC-CceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE
Q 000944 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKE-HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH 938 (1213)
Q Consensus 860 s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~-~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~ 938 (1213)
..++++|..+.+......+.....+.|+. +.... ...+++.|+. .|.|.+|++......+..+
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~- 107 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGT---FGATSLQQRYLATGDF------------GGNLHIWNLEAPEMPVYSV- 107 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEEESSCEEEEE---CTTCCTTTCCEEEEET------------TSCEEEECTTSCSSCSEEE-
T ss_pred cEEEEEeCCCCcccceeeecccCcEEEEE---EcCCCCCCceEEEecC------------CCeEEEEeCCCCCccEEEE-
Confidence 37888888877765555554455666553 33211 1478888764 4778899887642122222
Q ss_pred EEeecCcceEeccc-------cC-eEEEEeC-CeEEEEecCCce-eeceeee-c-CccceEEEEE------EeCCEEEEe
Q 000944 939 KTQVEGIPLALCQF-------QG-RLLAGIG-PVLRLYDLGKKR-LLRKCEN-K-LFPNTIVSIN------TYRDRIYVG 1000 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~-------~g-~ll~~~g-~~l~i~~~~~~~-l~~~~~~-~-~~~~~i~~l~------~~~~~I~vg 1000 (1213)
....++|++++.. ++ +|+++.. ..|++|++...+ ....-.. . .....+.++. ..++++++|
T Consensus 108 -~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 108 -KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp -CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred -EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence 2467888888532 34 4444443 589999998654 2221111 1 0122455555 567899999
Q ss_pred ecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee----cCCeeeeecCCCcEEEEecCC
Q 000944 1001 DIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI----DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1001 D~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l----d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.....+.++..+ ..+.... ......++++.+- +.+.++++..+|.+.+++...
T Consensus 187 ~~d~~i~i~d~~--~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 187 YDNGDIKLFDLR--NMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp ETTSEEEEEETT--TTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ccCCeEEEEECc--cCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 888888775543 3443222 2234457777765 456788899999999998754
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.05 E-value=0.53 Score=52.87 Aligned_cols=220 Identities=15% Similarity=0.059 Sum_probs=130.7
Q ss_pred CCeEEEEEEccCCCeeEEEEEe-CCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCccccc
Q 000944 754 GNALRVFTIERLGETFNETALP-LRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQME 832 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1213)
++.+++..+... +.-..+.++ -...+..++++|..+.++.++.+
T Consensus 29 d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------------------------------- 73 (372)
T 1k8k_C 29 NHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---------------------------------- 73 (372)
T ss_dssp SSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred CCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC----------------------------------
Confidence 578888887762 211344554 34577888999877766655411
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcC-CCceEEEEEEEEeccCCCceEEEEEeeecCcc
Q 000944 833 NGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQ-DNEAAFSICTVNFHDKEHGTLLAVGTAKGLQF 911 (1213)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~-~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~ 911 (1213)
..++++|..+.+....+.+. ....+.++. +. ...+++++|+.
T Consensus 74 ---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~---~~--~~~~~l~~~~~----- 116 (372)
T 1k8k_C 74 ---------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVR---WA--PNEKKFAVGSG----- 116 (372)
T ss_dssp ---------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEE---EC--TTSSEEEEEET-----
T ss_pred ---------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEE---EC--CCCCEEEEEeC-----
Confidence 14667776666655555543 334555543 32 23468888874
Q ss_pred CCCCCCcccEEEEEEEEeCCc-eEEEEEEEeecCcceEeccc-cC-eEEEEe-CCeEEEEecC-----------------
Q 000944 912 WPKRNIVAGYIHIYRFVEEGK-SLELLHKTQVEGIPLALCQF-QG-RLLAGI-GPVLRLYDLG----------------- 970 (1213)
Q Consensus 912 ~~e~~~~~Gri~v~~i~~~~~-kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~-g~~l~i~~~~----------------- 970 (1213)
.|.+.+|++..... .+.........++|++++-. ++ +|+++. ...+++|++.
T Consensus 117 -------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 117 -------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 189 (372)
T ss_dssp -------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred -------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence 36789999987521 12222223447888888754 34 444443 4589999964
Q ss_pred -CceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCC
Q 000944 971 -KKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKF 1047 (1213)
Q Consensus 971 -~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~ 1047 (1213)
..+... .+......+.++.. .++++++|..-..+.++..+. ...+..+.. +...++++.+-.++.++++-.+
T Consensus 190 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~d 264 (372)
T 1k8k_C 190 PFGELMF--ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-KMAVATLAS--ETLPLLAVTFITESSLVAAGHD 264 (372)
T ss_dssp CTTCEEE--ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEEC--SSCCEEEEEEEETTEEEEEETT
T ss_pred chhhheE--ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-CceeEEEcc--CCCCeEEEEEecCCCEEEEEeC
Confidence 122222 12122345666665 567999999888888865543 233434332 2335667676655666555589
Q ss_pred CcEEEEecCC
Q 000944 1048 GNIYFVRLPQ 1057 (1213)
Q Consensus 1048 gnl~il~~~~ 1057 (1213)
|.+.+++...
T Consensus 265 ~~i~i~~~~~ 274 (372)
T 1k8k_C 265 CFPVLFTYDS 274 (372)
T ss_dssp SSCEEEEEET
T ss_pred CeEEEEEccC
Confidence 9999998865
No 53
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.03 E-value=0.046 Score=64.02 Aligned_cols=217 Identities=11% Similarity=0.123 Sum_probs=134.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE-EEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL-LHK 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~-~~~ 939 (1213)
.++++|..+++.+..+.- ..+.+.++. +. ..+++.|+. .|.|.+|++.... .+.. ...
T Consensus 194 ~i~vwd~~~~~~~~~~~~-h~~~v~~l~---~~----~~~l~s~s~------------dg~i~vwd~~~~~-~~~~~~~~ 252 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIH-HCEAVLHLR---FN----NGMMVTCSK------------DRSIAVWDMASPT-DITLRRVL 252 (435)
T ss_dssp CEEEEESSSCCEEEEECC-CCSCEEEEE---CC----TTEEEEEET------------TSCEEEEECSSSS-CCEEEEEE
T ss_pred eEEEEECCCCcEEEEEcC-CCCcEEEEE---Ec----CCEEEEeeC------------CCcEEEEeCCCCC-CceeeeEe
Confidence 689999988887766653 334555553 32 247777763 4789999987642 2222 222
Q ss_pred EeecCcceEeccccCeEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 940 TQVEGIPLALCQFQGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 940 ~~~~g~V~ai~~~~g~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
....++|.+++.-+.+++++.. ..|++|++...+....... ....+.++...++++++|..-..+.++..+. ...+
T Consensus 253 ~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~ 329 (435)
T 1p22_A 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACL 329 (435)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEE
T ss_pred cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcC--CCCcEEEEEeCCCEEEEEeCCCeEEEEECCC-CCEE
Confidence 3457889998875555655554 5899999987765443322 3456788888899999999999988865543 2233
Q ss_pred EEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeecCcee
Q 000944 1019 YIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVV 1098 (1213)
Q Consensus 1019 ~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~lg~~v 1098 (1213)
..+. .+...++++.+ +...++.+..+|.|.+++........ .+. +........-| ...|
T Consensus 330 ~~~~--~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~--------------~~~~~~~~~~h-~~~v 388 (435)
T 1p22_A 330 RVLE--GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPR---APA--------------GTLCLRTLVEH-SGRV 388 (435)
T ss_dssp EEEC--CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTT---SCT--------------TTTEEEEECCC-SSCC
T ss_pred EEEe--CCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCcc---ccc--------------cchheeeccCC-CCCe
Confidence 3332 23445666666 77788889999999999975422110 000 11111111222 3346
Q ss_pred ceEEEeeecCCCccEEEEEecccceEEEEec
Q 000944 1099 TSLQKASLVPGGGESVIYGTVMGSLGAMLAF 1129 (1213)
Q Consensus 1099 ~~~~~~~~~~~~~~~i~~~t~~Gsig~l~~l 1129 (1213)
+++.. +...++.++.+|.|... .+
T Consensus 389 ~~l~~------~~~~l~s~s~Dg~i~iw-d~ 412 (435)
T 1p22_A 389 FRLQF------DEFQIVSSSHDDTILIW-DF 412 (435)
T ss_dssp CCEEE------CSSCEEECCSSSEEEEE-C-
T ss_pred EEEEe------CCCEEEEEeCCCEEEEE-EC
Confidence 66553 34568888889999844 45
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.99 E-value=0.5 Score=53.35 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=139.5
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|.|+++.+ ...+++.|..|+++.+|+..+......+. .+.. .+.-+.+. ....+|.
T Consensus 65 ~~V~~~~~s~------d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---~~~~--~v~~~~~s-----------p~g~~la 122 (354)
T 2pbi_B 65 NKVLCMDWCK------DKRRIVSSSQDGKVIVWDSFTTNKEHAVT---MPCT--WVMACAYA-----------PSGCAIA 122 (354)
T ss_dssp SCEEEEEECT------TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSS--CCCEEEEC-----------TTSSEEE
T ss_pred CeEEEEEECC------CCCEEEEEeCCCeEEEEECCCCCcceEEe---cCCC--CEEEEEEC-----------CCCCEEE
Confidence 5689999865 35689999999999999984432222111 1111 11112222 2456788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeec--CCCCeEEEEEECCeeEEEEecCccEEEEEeC-CeEE-EEecCcccccee
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLG--LRPPKLFSVVVGGRAAMLCLSSRPWLGYIHR-GRFL-LTPLSYETLEYA 737 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG--~~pv~l~~~~~~~~~~v~~~g~~p~~i~~~~-~~~~-~~~~~~~~v~~~ 737 (1213)
+|..||.+..|.+......-.......+. ..++.-..+.-++...+-+.++....++.-+ +++. ...-....+.++
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence 99999999988875432110001111111 1122211111112222222334444455422 2211 111111122221
Q ss_pred eccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEeC-CCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhh
Q 000944 738 ASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALPL-RYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECF 815 (1213)
Q Consensus 738 ~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 815 (1213)
.|......+.++..+ ++.+++-.+... -.++.+.. ...+..++++|..+.++.++.+
T Consensus 203 -~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----------------- 261 (354)
T 2pbi_B 203 -DLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGDAFASGSDD----------------- 261 (354)
T ss_dssp -EECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETT-----------------
T ss_pred -EEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC-----------------
Confidence 111111112344333 567777766542 23444433 3467788888877766655311
Q ss_pred HhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCC-ceEEEEEEEEecc
Q 000944 816 EAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDN-EAAFSICTVNFHD 894 (1213)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~-E~v~s~~~~~l~~ 894 (1213)
.+++++|..+.+.+..+..... ..+.+ +.+.
T Consensus 262 --------------------------------------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~---~~~s- 293 (354)
T 2pbi_B 262 --------------------------------------------ATCRLYDLRADREVAIYSKESIIFGASS---VDFS- 293 (354)
T ss_dssp --------------------------------------------SCEEEEETTTTEEEEEECCTTCCSCEEE---EEEC-
T ss_pred --------------------------------------------CeEEEEECCCCcEEEEEcCCCcccceeE---EEEe-
Confidence 1577888776665554433221 12333 3343
Q ss_pred CCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC-eEEEEeC-CeEEEEe
Q 000944 895 KEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG-RLLAGIG-PVLRLYD 968 (1213)
Q Consensus 895 ~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~g-~~l~i~~ 968 (1213)
....++++|.. .|.|.+|++... ..+..+ ....++|++++-- +| +|+.+.. +.|++|+
T Consensus 294 -~~g~~l~~g~~------------d~~i~vwd~~~~-~~~~~l--~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 -LSGRLLFAGYN------------DYTINVWDVLKG-SRVSIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -TTSSEEEEEET------------TSCEEEEETTTC-SEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -CCCCEEEEEEC------------CCcEEEEECCCC-ceEEEE--ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 23468888864 367899988553 233332 2457889888654 34 4544443 5788884
No 55
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.17 Score=64.00 Aligned_cols=178 Identities=10% Similarity=0.109 Sum_probs=108.6
Q ss_pred EEEEEeCC--CCceEEEEEcCC-CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 861 CIRVLDPR--SANTTCLLELQD-NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 861 ~i~l~d~~--~~~~~~~~~~~~-~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
.|+++|.. +++.+. .+.. ...|.++. +......++++.|.. .|.|.+|++..+ +.+.+
T Consensus 32 ~I~vwd~~~~~~~~~~--~l~~h~~~V~~l~---~s~~~~~~~l~s~s~------------Dg~I~vwd~~~~--~~~~~ 92 (753)
T 3jro_A 32 TIKIFEVEGETHKLID--TLTGHEGPVWRVD---WAHPKFGTILASCSY------------DGKVLIWKEENG--RWSQI 92 (753)
T ss_dssp EEEEEEEETTEEEEEE--EECCCSSCEEEEE---ECCTTSCSEEEEEET------------TSCEEEEEEETT--EEEEE
T ss_pred cEEEEecCCCCCccce--eccCCcCceEEEE---ecCCCCCCEEEEEeC------------CCeEEEEECCCC--ccccc
Confidence 56677654 233333 3332 23455543 322122468887764 478999999875 43333
Q ss_pred E-EEeecCcceEecccc---C-eEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEEe---------------CCE
Q 000944 938 H-KTQVEGIPLALCQFQ---G-RLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINTY---------------RDR 996 (1213)
Q Consensus 938 ~-~~~~~g~V~ai~~~~---g-~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~---------------~~~ 996 (1213)
. .....++|++++--. | .++++.. +.|++|++..............+..+.++... +++
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 3 334678999887653 4 4444443 58999999865332222222234567777653 578
Q ss_pred EEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEeecC----CeeeeecCCCcEEEEecCC
Q 000944 997 IYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHHIDF----DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 997 I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ld~----~~~l~~D~~gnl~il~~~~ 1057 (1213)
+++|..-..|.++..+........+. -..+...++++.+-.. ..++.++.+|.+.+++...
T Consensus 173 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 99999989999988876544332222 1234556777776544 3578889999999998865
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.96 E-value=0.51 Score=54.19 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=123.9
Q ss_pred cEEEEeCC--CceeeeeCCCCccEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCc
Q 000944 521 GIRHIRED--GRINEWRTPGKRTIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGR 596 (1213)
Q Consensus 521 ~i~l~~~~--~~~~~~~~~~~~~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~ 596 (1213)
.|++.+.. +....+..+.+..|.+.+.. +.+++++..+|.+.++.+.....+..+. .-...|.|++..
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~------ 185 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWN------ 185 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEE------
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEEC------
Confidence 35555533 23333333344568888775 4677777778899888765322222221 234568888772
Q ss_pred eeeeEEEEEEeCCcEEEEEeCCCCc-eeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 597 KRSRFLAVGSYDNTIRILSLDPDDC-MQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 597 ~~~~~l~v~~~~~~i~i~sl~p~~~-l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
..++++|..++.+.+|+++.... ..... .....+.-+.+. ....+|+.|..||.+..|.+.
T Consensus 186 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~-----------~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 186 --RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWR-----------SDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEEC-----------TTSSEEEEEETTSCEEEEETT
T ss_pred --CCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEc-----------CCCCEEEEEeCCCeEEEccCC
Confidence 45889999999999999952221 11111 112222222332 245678999999999888764
Q ss_pred CCCCcccccceeeecCCCCeEEEEEECCeeEEEEe-c---CccEEEEEeCCeEEEEecCcc-ccceeeccccCCCCceEE
Q 000944 676 MVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCL-S---SRPWLGYIHRGRFLLTPLSYE-TLEYAASFSSDQCVEGVV 750 (1213)
Q Consensus 676 ~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~v~~~-g---~~p~~i~~~~~~~~~~~~~~~-~v~~~~~f~~~~~~~~~i 750 (1213)
. +.. .....-...++.-..+.-.+. .++++ | +....++.-+..-....+... .+.++ .|+.. ...++
T Consensus 248 ~--~~~--~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~-~~s~~--~~~l~ 319 (401)
T 4aez_A 248 S--SIP--KFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL-IWSPH--SKEIM 319 (401)
T ss_dssp C--SSE--EEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE-EECSS--SSEEE
T ss_pred C--CCc--cEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE-EECCC--CCeEE
Confidence 3 211 001111122333222211122 34443 2 444555553221111111111 22222 22211 22344
Q ss_pred EEe---CCeEEEEEEccCCCeeEEEEEeC-CCccceeeecCCCceEEEEE
Q 000944 751 SVA---GNALRVFTIERLGETFNETALPL-RYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 751 ~~~---~~~L~i~~l~~~~~~~~~r~i~l-~~tp~~i~y~~~~~~~~v~~ 796 (1213)
.++ ++.+.+..+... .......++- ...+..++++|..+.++.++
T Consensus 320 ~~~g~~dg~i~v~~~~~~-~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS-GLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp EEECTTTCEEEEEEEETT-EEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred EEeecCCCcEEEEecCCc-cceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 443 578999888862 2233333332 35788899999888776664
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.95 E-value=0.19 Score=58.43 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=56.8
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+|+++|..+++.+..+... ..+.++.. . .....+++|++.. .|.|.+|++... ..+..+ .
T Consensus 302 ~I~iwd~~t~~~~~~~~~~--~~v~~~~~---~--~~~~~lv~~sg~~----------d~~I~iwd~~~~-~~v~~l--~ 361 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDAH--SQVCSILW---S--PHYKELISGHGFA----------QNQLVIWKYPTM-AKVAEL--K 361 (420)
T ss_dssp EEEEEETTTTEEEEEEECS--SCEEEEEE---E--TTTTEEEEEECTT----------TCCEEEEETTTC-CEEEEE--C
T ss_pred EEEEEeCCccccceeeccc--cceeeeee---c--CCCCeEEEEEecC----------CCEEEEEECCCC-cEEEEE--c
Confidence 7999999998887766543 34444432 1 2245677776532 367999987643 233322 2
Q ss_pred eecCcceEeccc-cCeEEE-EeC-CeEEEEecCC
Q 000944 941 QVEGIPLALCQF-QGRLLA-GIG-PVLRLYDLGK 971 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~ll~-~~g-~~l~i~~~~~ 971 (1213)
...++|++++-- +|.+++ |.. ..|++|++.+
T Consensus 362 gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 362 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 357899998754 454444 443 5899999864
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.76 Score=51.17 Aligned_cols=147 Identities=15% Similarity=0.052 Sum_probs=90.6
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEeccc-cCeEEE-Ee-CCeEEEEecCCce
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQF-QGRLLA-GI-GPVLRLYDLGKKR 973 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~-~g~ll~-~~-g~~l~i~~~~~~~ 973 (1213)
.++++.|.. -|.+.+|++...+...+.+.. ....++|++++-- ++.+++ +. ...|++|+.....
T Consensus 119 g~~las~s~------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 119 GYYLATCSR------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp SCEEEEEET------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred CCEEEEEeC------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 467777753 367889998644323333322 2456788888643 344444 33 3589999886543
Q ss_pred eeceeeecCccceEEEEEEeC----CEEEEeecCCcEEEEEEeccCC------eEEEeeccCCCcceEEEEeecCCeeee
Q 000944 974 LLRKCENKLFPNTIVSINTYR----DRIYVGDIQESFHFCKYRRDEN------QLYIFADDSVPRWLTAAHHIDFDTMAG 1043 (1213)
Q Consensus 974 l~~~~~~~~~~~~i~~l~~~~----~~I~vgD~~~Sv~~l~~~~~~~------~l~~~a~D~~~~~~~~~~~ld~~~~l~ 1043 (1213)
......+..+...+.++.... .+++.|..-..+.++.+..... .....-...+...++++.+-+.+.++.
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s 266 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIAS 266 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEE
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEE
Confidence 322333333344677776543 4788888888899987754311 122222233566788887776667888
Q ss_pred ecCCCcEEEEecC
Q 000944 1044 ADKFGNIYFVRLP 1056 (1213)
Q Consensus 1044 ~D~~gnl~il~~~ 1056 (1213)
+..+|.+.+++..
T Consensus 267 ~~~dg~v~iw~~~ 279 (330)
T 2hes_X 267 VGADGVLAVYEEV 279 (330)
T ss_dssp EETTSCEEEEEEE
T ss_pred EeCCCEEEEEEcC
Confidence 8899999998864
No 59
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.92 E-value=0.41 Score=53.64 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=107.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK- 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~- 939 (1213)
.++++|..+.+.+..+.... ..+.++ .+. ....+++.|.. .|.+.+|++.......+....
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~-~~v~~~---~~s--~~~~~l~s~~~------------d~~v~iw~~~~~~~~~~~~~~~ 139 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPLRS-SWVMTC---AYA--PSGNYVACGGL------------DNICSIYNLKTREGNVRVSREL 139 (340)
T ss_dssp EEEEEETTTCCEEEEEECSS-SCEEEE---EEC--TTSSEEEEEET------------TCEEEEEETTTCSBSCEEEEEE
T ss_pred cEEEEECCCCCcceEeecCC-ccEEEE---EEC--CCCCEEEEEeC------------CCeEEEEECccCCCcceeEEEe
Confidence 68899988887777666543 334443 333 23468887763 367888887653222222222
Q ss_pred EeecCcceEeccc-cCeEEEEeC-CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccC
Q 000944 940 TQVEGIPLALCQF-QGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDE 1015 (1213)
Q Consensus 940 ~~~~g~V~ai~~~-~g~ll~~~g-~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~ 1015 (1213)
....++|+++.-. ++.++++.+ ..|++|++...+.... +......+.++.. .+++++.|..-..+.++..+. .
T Consensus 140 ~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~ 216 (340)
T 1got_B 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-G 216 (340)
T ss_dssp ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-C
T ss_pred cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-C
Confidence 2356788887655 356666555 5799999987665433 2222345666665 467899999888888855432 1
Q ss_pred CeEEEeeccCCCcceEEEEee-cCCeeeeecCCCcEEEEecCC
Q 000944 1016 NQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1016 ~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.....+. .+...++++.+- +...++.+..+|.+.+++...
T Consensus 217 ~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 217 MCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp SEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 2222221 234457777665 444678889999999998754
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.91 E-value=0.15 Score=59.66 Aligned_cols=170 Identities=8% Similarity=0.074 Sum_probs=111.3
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.- ....|.|+. +. ..+++.|+. .|.|.+|++... ..+..+ .
T Consensus 154 ~i~iwd~~~~~~~~~~~~-h~~~v~~l~---~~----~~~l~sg~~------------dg~i~vwd~~~~-~~~~~~--~ 210 (435)
T 1p22_A 154 TIKIWDKNTLECKRILTG-HTGSVLCLQ---YD----ERVIITGSS------------DSTVRVWDVNTG-EMLNTL--I 210 (435)
T ss_dssp CEEEEESSSCCEEEEECC-CSSCEEEEE---CC----SSEEEEEET------------TSCEEEEESSSC-CEEEEE--C
T ss_pred eEEEEeCCCCeEEEEEcC-CCCcEEEEE---EC----CCEEEEEcC------------CCeEEEEECCCC-cEEEEE--c
Confidence 688999888877665542 234555553 32 358888864 478999998764 122222 2
Q ss_pred eecCcceEeccccCeEEEEeC-CeEEEEecCCceeec-eeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 941 QVEGIPLALCQFQGRLLAGIG-PVLRLYDLGKKRLLR-KCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~g-~~l~i~~~~~~~l~~-~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
...++|.+++.-++.++++.. +.|++|++...+... ..........+.++...++++++|..-..+.++..+. ...+
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~ 289 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST-CEFV 289 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT-CCEE
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCc-CcEE
Confidence 457889998877777666554 589999998654321 1222223557888888999999999988888754432 2233
Q ss_pred EEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1019 YIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1019 ~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
..+. .+...++++.+ +...++.+..+|.|.+++...
T Consensus 290 ~~~~--~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 290 RTLN--GHKRGIACLQY-RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp EEEE--CCSSCEEEEEE-ETTEEEEEETTSCEEEEETTT
T ss_pred EEEc--CCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCC
Confidence 3332 23345555555 667788899999999998754
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=2 Score=55.26 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=67.4
Q ss_pred cEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCC
Q 000944 541 TIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDP 618 (1213)
Q Consensus 541 ~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p 618 (1213)
.|.+.+.. +.+++.+..+|.|.++... .+.. .....-...|.++++.+ ..+++.+..|++|.+|+++.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~--~~~~~~~~~V~~l~fsp-------g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEV--VIKLEDRSAIKEMRFVK-------GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST-TCEE--EEECSSCCCEEEEEEET-------TTEEEEEETTCEEEEEETTT
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEE--EEEcCCCCCEEEEEEcC-------CCEEEEEECcCeEEEEECCC
Confidence 46666665 4577777778888887543 1211 12222245789999865 23788899999999999954
Q ss_pred CCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 619 DDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 619 ~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
...+..+. .+..+..+.+. ....+|++|..||.+..|.++
T Consensus 89 ~~~~~~~~------~~~~V~~v~~s-----------p~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 89 QKVLTTVF------VPGKITSIDTD-----------ASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CSEEEEEE------CSSCEEEEECC-----------TTCSEEEEEETTSCEEEEETT
T ss_pred CcEEEEEc------CCCCEEEEEEC-----------CCCCEEEEEcCCCcEEEEECC
Confidence 33333221 11122222222 245689999999999888764
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.87 E-value=0.34 Score=60.48 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=90.0
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|+|++..+. ...+++.|..|++|++|++..+..........+......+.-+.+. ....+|+
T Consensus 383 ~~V~~v~~~~~-----~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----------~~g~~l~ 446 (694)
T 3dm0_A 383 DMVTAIATPID-----NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-----------SDGQFAL 446 (694)
T ss_dssp SCEEEEECCTT-----CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-----------TTSSEEE
T ss_pred ceeEEEEecCC-----CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-----------CCCCEEE
Confidence 56899987541 3578999999999999999543221111111121222222222222 2356788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEEC-CeeEEEEe-cCccEEEEEeCCeEEEEecCc----c-cc
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVG-GRAAMLCL-SSRPWLGYIHRGRFLLTPLSY----E-TL 734 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~-~~~~v~~~-g~~p~~i~~~~~~~~~~~~~~----~-~v 734 (1213)
.|..||.+..|.+.. +.. .....|. .-....+... ....++.+ .++...++...+...+..... . .+
T Consensus 447 sgs~Dg~v~vwd~~~--~~~---~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 447 SGSWDGELRLWDLAA--GVS---TRRFVGH-TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEETTSEEEEEETTT--TEE---EEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEeCCCcEEEEECCC--Ccc---eeEEeCC-CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999998887642 211 0111221 1112222222 12223333 345555554333222221110 0 12
Q ss_pred ceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CCCccceeeecCCCceEEEEE
Q 000944 735 EYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LRYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 735 ~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~~tp~~i~y~~~~~~~~v~~ 796 (1213)
.+ ..|+.......++..+ ++.+++-.+... + ..+.+. -...+..++++|..+.++.++
T Consensus 521 ~~-~~~~~~~~~~~l~s~s~d~~v~vwd~~~~--~-~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 521 SC-VRFSPNTLQPTIVSASWDKTVKVWNLSNC--K-LRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp EE-EEECSCSSSCEEEEEETTSCEEEEETTTC--C-EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EE-EEEeCCCCcceEEEEeCCCeEEEEECCCC--c-EEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 22 2232221112344444 567877776652 1 223332 234677888888777655543
No 63
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.84 E-value=0.41 Score=52.64 Aligned_cols=172 Identities=8% Similarity=0.072 Sum_probs=104.2
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.... ..+.++. |. ...++++.|.. -|.|.+|++... ..+..+ .
T Consensus 36 ~v~lWd~~~~~~~~~~~~~~-~~v~~~~---~~--~~~~~l~s~s~------------d~~i~vwd~~~~-~~~~~~--~ 94 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVTE-TPVRAGK---FI--ARKNWIIVGSD------------DFRIRVFNYNTG-EKVVDF--E 94 (304)
T ss_dssp EEEEEETTTTEEEEEEECCS-SCEEEEE---EE--GGGTEEEEEET------------TSEEEEEETTTC-CEEEEE--E
T ss_pred cEEEEECCCCceeEEeeccC-CcEEEEE---Ee--CCCCEEEEECC------------CCEEEEEECCCC-cEEEEE--e
Confidence 68999988887776665433 3344443 32 23468887764 478899987654 222222 2
Q ss_pred eecCcceEeccc-cC-eEEEEeC-CeEEEEecCCc-eeeceeeecCccceEEEEEEe---CCEEEEeecCCcEEEEEEec
Q 000944 941 QVEGIPLALCQF-QG-RLLAGIG-PVLRLYDLGKK-RLLRKCENKLFPNTIVSINTY---RDRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g-~ll~~~g-~~l~i~~~~~~-~l~~~~~~~~~~~~i~~l~~~---~~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
...++|++++-- ++ +|+.|.. ..|++|++... .+... +......+.++... +++++.|..-..+.++....
T Consensus 95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT--FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE--ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh--hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 467889888754 33 4444443 58999999755 33222 22234567777754 46888998888888866543
Q ss_pred cCCeEEEeeccCCCcceEEEEee---cCCeeeeecCCCcEEEEecCC
Q 000944 1014 DENQLYIFADDSVPRWLTAAHHI---DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1014 ~~~~l~~~a~D~~~~~~~~~~~l---d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
....+.... .+...+..+.+. +...++.+..+|.|.+++...
T Consensus 173 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 173 STPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp SSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred CCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 333333322 223344444442 233578888999999998653
No 64
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.82 E-value=0.84 Score=52.67 Aligned_cols=96 Identities=16% Similarity=0.280 Sum_probs=58.8
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCe-EEEEeC-CeEEEEecCCcee
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGR-LLAGIG-PVLRLYDLGKKRL 974 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~-ll~~~g-~~l~i~~~~~~~l 974 (1213)
..+++.|+. .|.|.+|++... ..+..+ ....++|++++-- +|. |+.+.. ..|++|++...+.
T Consensus 308 g~~l~sgs~------------D~~i~iwd~~~~-~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 308 GPFLLSGSR------------DKTIKMWDVSTG-MCLMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp CCEEEEEET------------TSEEEEEETTTT-EEEEEE--ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred CCEEEEEeC------------CCeEEEEECCCC-ceEEEE--ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence 357777764 467899988653 222222 2356788887643 344 444333 5799999987665
Q ss_pred eceeeecCccceEEEEEEe--CCEEEEeecCCcEEEEE
Q 000944 975 LRKCENKLFPNTIVSINTY--RDRIYVGDIQESFHFCK 1010 (1213)
Q Consensus 975 ~~~~~~~~~~~~i~~l~~~--~~~I~vgD~~~Sv~~l~ 1010 (1213)
...-. .+...|+++... +++|+.|..-..|.++.
T Consensus 373 ~~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 373 MKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 43322 234467777654 56788887777776643
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=2.2 Score=54.84 Aligned_cols=150 Identities=9% Similarity=0.106 Sum_probs=83.6
Q ss_pred CccCCCCeEEEEeecCCeEEEEeCCcEEEEeCCCceeeeeCCCCccEEEEEec-CCEEEEEEeCCEEEEEEEccCCCeEE
Q 000944 496 GFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSN-RLQVVIALSGGELIYFEVDMTGQLLE 574 (1213)
Q Consensus 496 gf~~~~~Tl~a~~~~~~~ivQVT~~~i~l~~~~~~~~~~~~~~~~~I~~as~~-~~~v~v~~s~~~l~~l~~~~~~~l~~ 574 (1213)
.|..+...|++|.. ++ .|++.+..........+....|...+.. +.+++.+..++.+.++.+.. ++..
T Consensus 24 afspdg~~lAsgs~-Dg--------~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~-~~~~- 92 (902)
T 2oaj_A 24 AFDFTQNLLAIATV-TG--------EVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYS-QKVL- 92 (902)
T ss_dssp EEETTTTEEEEEET-TS--------EEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTT-CSEE-
T ss_pred EECCCCCEEEEEeC-CC--------EEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCC-CcEE-
Confidence 34556677777774 33 3444443321111122233457777765 44566555678898887663 3322
Q ss_pred eeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEe-------ecCCCCceeEEEEeecccC
Q 000944 575 VEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQ-------SVSSPPESLLFLEVQASVG 647 (1213)
Q Consensus 575 ~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~-------~l~~~p~Sl~~~~~~~~~~ 647 (1213)
..+.....|+|+++.+ ...++++|+.||+|++|+++ ...+...... .+......+.-+.+..
T Consensus 93 -~~~~~~~~V~~v~~sp------~g~~l~sgs~dg~V~lwd~~-~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp--- 161 (902)
T 2oaj_A 93 -TTVFVPGKITSIDTDA------SLDWMLIGLQNGSMIVYDID-RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP--- 161 (902)
T ss_dssp -EEEECSSCEEEEECCT------TCSEEEEEETTSCEEEEETT-TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET---
T ss_pred -EEEcCCCCEEEEEECC------CCCEEEEEcCCCcEEEEECC-CCccccceeccccccccccccCCCCeEEEEEcc---
Confidence 2233456799999865 36789999999999999994 3233211110 1111111111122221
Q ss_pred CCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 648 GEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 648 ~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
.+...|++|..||.+ .|.+.
T Consensus 162 -------~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 162 -------RDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp -------TEEEEEEEECSSCEE-EEETT
T ss_pred -------CCCCEEEEEeCCCcE-EEECC
Confidence 123578899999998 77654
No 66
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.16 Score=57.13 Aligned_cols=142 Identities=12% Similarity=0.093 Sum_probs=85.5
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.......+.|+. +. ....+++.|+. .|.|.+|++.... .+......
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~---~~--pdg~~lasg~~------------dg~i~iwd~~~~~-~~~~~~~~ 211 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGV---LH--KDSLLLALYSP------------DGILDVYNLSSPD-QASSRFPV 211 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEE---EC--TTSCEEEEECT------------TSCEEEEESSCTT-SCCEECCC
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEE---EC--CCCCEEEEEcC------------CCEEEEEECCCCC-CCccEEec
Confidence 5788888887775554444444555554 32 23478888863 4789999987642 22111122
Q ss_pred eecCcceEeccc-cC-eEEEEeCCeEEEEecCCceeece-eee--cCcc--ceEEEEEEeCCEEEEeec-CCcEEEEEEe
Q 000944 941 QVEGIPLALCQF-QG-RLLAGIGPVLRLYDLGKKRLLRK-CEN--KLFP--NTIVSINTYRDRIYVGDI-QESFHFCKYR 1012 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g-~ll~~~g~~l~i~~~~~~~l~~~-~~~--~~~~--~~i~~l~~~~~~I~vgD~-~~Sv~~l~~~ 1012 (1213)
...++|++++-- +| +|+++....|++|++...+.... ..+ ...+ ....+.+..+.++++|.. -..+.++.|+
T Consensus 212 ~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 212 DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 357899988754 34 55566666899999986543211 110 0011 113445556889999877 7789999887
Q ss_pred ccCCeEEE
Q 000944 1013 RDENQLYI 1020 (1213)
Q Consensus 1013 ~~~~~l~~ 1020 (1213)
........
T Consensus 292 ~~~~~~~~ 299 (343)
T 3lrv_A 292 KKTKNWTK 299 (343)
T ss_dssp TTTCSEEE
T ss_pred ccccceEe
Confidence 65544443
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.76 E-value=0.45 Score=54.04 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=143.2
Q ss_pred eeeccCcceEEEEeeecCCCceeeeEEEEEEeC-------CcEEEEEeCCCCc-----eeEeEEeecCCCCceeEEEEee
Q 000944 576 EKHEMSGDVACLDIASVPEGRKRSRFLAVGSYD-------NTIRILSLDPDDC-----MQILSVQSVSSPPESLLFLEVQ 643 (1213)
Q Consensus 576 ~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~-------~~i~i~sl~p~~~-----l~~~~~~~l~~~p~Sl~~~~~~ 643 (1213)
.+..+..+|.|+++.+ ...+|+.|..+ +.|++|.+++... +.......|+....++.-+...
T Consensus 9 ~~~~~g~PV~sv~fs~------dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 9 ASYNVGYPAYGAKFLN------NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp EEEECSSCEEEEEEEE------TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE
T ss_pred eecCCCCCEEEEEEeC------CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC
Confidence 3456778999999975 35677777542 3599999965422 1222222333222221111111
Q ss_pred cccCCCCCCCCCCceEEEEEe-----------eCCeEEEEEEeCCCCcccccceee-e--c--CCCCeEEEEEECCeeEE
Q 000944 644 ASVGGEDGADHPASLFLNAGL-----------QNGVLFRTVVDMVTGQLSDSRSRF-L--G--LRPPKLFSVVVGGRAAM 707 (1213)
Q Consensus 644 ~~~~~~~~~~~~~~~~Lligl-----------~~G~l~~~~~~~~~~~l~~~~~~~-l--G--~~pv~l~~~~~~~~~~v 707 (1213)
...+++|. .|+.+-.|.++...+.+....... . + ...++...+.-+|...+
T Consensus 83 -------------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 83 -------------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp -------------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred -------------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 22344443 355566677665433221111100 0 0 01123333332344455
Q ss_pred EEecCc--cEEEEEeC-CeEEEEecCccccceeeccccCCCCceEEEEeCCeEEEEEEccCCCeeEEEEEeC--CCccce
Q 000944 708 LCLSSR--PWLGYIHR-GRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPL--RYTPRR 782 (1213)
Q Consensus 708 ~~~g~~--p~~i~~~~-~~~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~~~~L~i~~l~~~~~~~~~r~i~l--~~tp~~ 782 (1213)
++.|+. ...++.-+ +......-....|.++ .|+.. ..-++..+++.+.+-.... .+...+.... +..++.
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v-~fspd--g~~l~s~s~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIETRGEVKDL-HFSTD--GKVVAYITGSSLEVISTVT--GSCIARKTDFDKNWSLSK 224 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEECSSCCCEE-EECTT--SSEEEEECSSCEEEEETTT--CCEEEEECCCCTTEEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeCCCCceEEE-EEccC--CceEEeccceeEEEEEecc--CcceeeeecCCCCCCEEE
Confidence 566643 34455432 3333322122234433 23221 1233444566665544433 1222333322 246788
Q ss_pred eeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEE
Q 000944 783 FVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCI 862 (1213)
Q Consensus 783 i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i 862 (1213)
++++|..+.++.+..+.. ....+
T Consensus 225 v~fspdg~~l~~~s~d~~---------------------------------------------------------~~~~i 247 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKG---------------------------------------------------------KGIVL 247 (365)
T ss_dssp EEEEETTEEEEEEEESSS---------------------------------------------------------CCEEE
T ss_pred EEEcCCCCEEEEEecCCc---------------------------------------------------------ceeEE
Confidence 999998877776653210 01245
Q ss_pred EEEeCCCCce--EEEEEcCC-CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 863 RVLDPRSANT--TCLLELQD-NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 863 ~l~d~~~~~~--~~~~~~~~-~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
++++...+.. .....+.. ...|+|+. |. ....+++.|+. -|.|.+|++... ++.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~S--pdg~~lasgs~------------D~~V~iwd~~~~--~~~~~~~ 308 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMD---VD--MKGELAVLASN------------DNSIALVKLKDL--SMSKIFK 308 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEE---EC--TTSCEEEEEET------------TSCEEEEETTTT--EEEEEET
T ss_pred eecccccceecceeeeeecCCCCCeEeEE---EC--CCCCceEEEcC------------CCEEEEEECCCC--cEEEEec
Confidence 5555443322 22233332 23455543 33 33478998874 267889987643 2211112
Q ss_pred EeecCcceEeccc-cCeEEEEeC--CeEEEEecCC
Q 000944 940 TQVEGIPLALCQF-QGRLLAGIG--PVLRLYDLGK 971 (1213)
Q Consensus 940 ~~~~g~V~ai~~~-~g~ll~~~g--~~l~i~~~~~ 971 (1213)
.-..++|++++-- +|++|++.+ ++|+||++..
T Consensus 309 ~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 309 QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 2357899998754 466655433 6899999863
No 68
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.76 E-value=0.16 Score=58.46 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCce-EEEEEcCCCceEEEEEEEEeccCCCceEEE-EEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 860 SCIRVLDPRSANT-TCLLELQDNEAAFSICTVNFHDKEHGTLLA-VGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 860 s~i~l~d~~~~~~-~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~-VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
..++++|..+++. +....+.....+.++. +.. ++ .+++ .|.. .|.|.+|++......+..+
T Consensus 245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~s~-~~-~~l~~~g~~------------dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQELDTSSGVLLPF---FDP-DT-NIVYLCGKG------------DSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp EEEEEEETTBCSSCSEEEECCCCSSCEEEE---EET-TT-TEEEEEETT------------CSCEEEEEECSSTTCEEEE
T ss_pred ceEEEEcCccccCCceEEeccCCCceeEEE---EcC-CC-CEEEEEEcC------------CCeEEEEEecCCCcceEee
Confidence 3788888877653 4455555555555543 322 22 3444 4432 4789999998753226666
Q ss_pred EEEeecCcceEecccc-CeEEEEeCCeEEEEecCCceeece
Q 000944 938 HKTQVEGIPLALCQFQ-GRLLAGIGPVLRLYDLGKKRLLRK 977 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~~-g~ll~~~g~~l~i~~~~~~~l~~~ 977 (1213)
......++|.+++-.. +.++++.+..+.+|++...++.+.
T Consensus 308 ~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 308 SMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp EEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEEEEE
T ss_pred cccccCCcccceEEecccccceecceeEEEEEcCCCcEEEE
Confidence 6666779999987663 455566566789999987665444
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.75 E-value=0.69 Score=52.50 Aligned_cols=116 Identities=14% Similarity=0.217 Sum_probs=70.4
Q ss_pred ccEEEEEecC---CEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 540 RTIVKVGSNR---LQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 540 ~~I~~as~~~---~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
..|.+.+... .+++.+..++.+.++.+........+....-...|.++++.+. ...++++|..|+.+.+|++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-----NTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-----EEEEEEEEETTTEEEEEET
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-----CCCEEEEEeCCCEEEEEEC
Confidence 4577776653 4677676788998887663222222211124567999998642 3678999999999999999
Q ss_pred CCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEE
Q 000944 617 DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVV 674 (1213)
Q Consensus 617 ~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~ 674 (1213)
+ ...+..+.. .......+.-+.+.. ...+|+.|..||.+..|.+
T Consensus 149 ~-~~~~~~~~~--~~~~~~~v~~~~~~~-----------~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 149 S-GSVIQVFAK--TDSWDYWYCCVDVSV-----------SRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp T-SCEEEEEEC--CCCSSCCEEEEEEET-----------TTTEEEEEETTSEEEEEET
T ss_pred C-CCceEEEec--cCCCCCCeEEEEECC-----------CCCEEEEECCCCCEEEEEC
Confidence 5 323322211 111112222223321 3457899999999988876
No 70
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.75 E-value=0.99 Score=49.92 Aligned_cols=281 Identities=17% Similarity=0.216 Sum_probs=136.6
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|.++++.+. ...+++.|.+|+++.+|.+..+..........+......+.-+.+. ....+|+
T Consensus 18 ~~V~~l~~~~~-----~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-----------~dg~~l~ 81 (319)
T 3frx_A 18 GWVTSLATSAG-----QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-----------ADGAYAL 81 (319)
T ss_dssp SCEEEEEECSS-----CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-----------TTSSEEE
T ss_pred ceEEEEEccCC-----CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-----------CCCCEEE
Confidence 56889988642 2468999999999999998432111111111121111222222222 2456788
Q ss_pred EEeeCCeEEEEEEeCCCCcccccceeeecCCCCeEEEEEECC-eeEEEEe-cCccEEEEEeCCeEEEEecCc-cccceee
Q 000944 662 AGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGG-RAAMLCL-SSRPWLGYIHRGRFLLTPLSY-ETLEYAA 738 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~~~l~~~~~~~lG~~pv~l~~~~~~~-~~~v~~~-g~~p~~i~~~~~~~~~~~~~~-~~v~~~~ 738 (1213)
.|..||.+..|.+.. ++.. ....|.. -....+.... ...++.. .++...++.-++.....-... ..+.++.
T Consensus 82 s~s~D~~v~~wd~~~--~~~~---~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 82 SASWDKTLRLWDVAT--GETY---QRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp EEETTSEEEEEETTT--TEEE---EEEECCS-SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred EEeCCCEEEEEECCC--CCee---EEEccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence 999999998887642 3211 1112211 1122222222 2222222 344555555443322211111 1222222
Q ss_pred ccccCC-CCce--EEEEe-CCeEEEEEEccCCCeeEEEEE-eCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHH
Q 000944 739 SFSSDQ-CVEG--VVSVA-GNALRVFTIERLGETFNETAL-PLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKE 813 (1213)
Q Consensus 739 ~f~~~~-~~~~--~i~~~-~~~L~i~~l~~~~~~~~~r~i-~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 813 (1213)
-..... .+++ ++... ++.+++-.+... .. ...+ .-...+..++++|..+.++.+..+
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~-~~~~~~h~~~v~~~~~sp~g~~l~s~~~d--------------- 217 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQF--QI-EADFIGHNSNINTLTASPDGTLIASAGKD--------------- 217 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTT--EE-EEEECCCCSCEEEEEECTTSSEEEEEETT---------------
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcc--hh-heeecCCCCcEEEEEEcCCCCEEEEEeCC---------------
Confidence 111111 1122 23233 567777766652 12 2222 223566778888877665554310
Q ss_pred hhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEec
Q 000944 814 CFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFH 893 (1213)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~ 893 (1213)
..++++|..+.+.+..+.. .+.+.++. |.
T Consensus 218 ----------------------------------------------g~i~iwd~~~~~~~~~~~~--~~~v~~~~---~s 246 (319)
T 3frx_A 218 ----------------------------------------------GEIMLWNLAAKKAMYTLSA--QDEVFSLA---FS 246 (319)
T ss_dssp ----------------------------------------------CEEEEEETTTTEEEEEEEC--CSCEEEEE---EC
T ss_pred ----------------------------------------------CeEEEEECCCCcEEEEecC--CCcEEEEE---Ec
Confidence 2789999988887776654 34555543 33
Q ss_pred cCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-------EeecCcceEeccc-cC-eEEEEeC-Ce
Q 000944 894 DKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-------TQVEGIPLALCQF-QG-RLLAGIG-PV 963 (1213)
Q Consensus 894 ~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-------~~~~g~V~ai~~~-~g-~ll~~~g-~~ 963 (1213)
....+++.|+. +.+.+|.+... ++..... ....+.|.+++-- +| +|+++.. +.
T Consensus 247 --p~~~~la~~~~-------------~~i~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 247 --PNRYWLAAATA-------------TGIKVFSLDPQ--YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp --SSSSEEEEEET-------------TEEEEEEETTE--EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred --CCCCEEEEEcC-------------CCcEEEEeCcC--eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 23467776653 23677777542 2111111 1123456665432 34 4444433 57
Q ss_pred EEEEecC
Q 000944 964 LRLYDLG 970 (1213)
Q Consensus 964 l~i~~~~ 970 (1213)
|++|++.
T Consensus 310 i~vWd~~ 316 (319)
T 3frx_A 310 IRVWQVM 316 (319)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999874
No 71
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=1.2 Score=52.13 Aligned_cols=146 Identities=9% Similarity=0.018 Sum_probs=85.5
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC--CeEEEEecCCceee
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG--PVLRLYDLGKKRLL 975 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g--~~l~i~~~~~~~l~ 975 (1213)
..+++.|.. .|.|.+|++... +..........++|++++--+|.++++.+ ..|++|++...+.+
T Consensus 210 ~~~l~s~~~------------d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 210 HQFIITSDR------------DEHIKISHYPQC--FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp CEEEEEEET------------TSCEEEEEESCT--TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEE
T ss_pred CcEEEEEcC------------CCcEEEEECCCC--ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEe
Confidence 468877753 378999998754 22222223456889888655565554333 48999999876543
Q ss_pred ceeeec-----------------------CccceEEEEEEe--CCEEEEee-cCCcEEEEEE-eccCCeEEEeeccCCCc
Q 000944 976 RKCENK-----------------------LFPNTIVSINTY--RDRIYVGD-IQESFHFCKY-RRDENQLYIFADDSVPR 1028 (1213)
Q Consensus 976 ~~~~~~-----------------------~~~~~i~~l~~~--~~~I~vgD-~~~Sv~~l~~-~~~~~~l~~~a~D~~~~ 1028 (1213)
...... .....+.++... +++++++- ....+.++.+ +....++..+..=....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~ 355 (450)
T 2vdu_B 276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY 355 (450)
T ss_dssp EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS
T ss_pred eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC
Confidence 322110 012245566554 67888887 6778888888 33344454443322234
Q ss_pred ceEEEEeecCCeeeeecC-------CCcEEEEecCC
Q 000944 1029 WLTAAHHIDFDTMAGADK-------FGNIYFVRLPQ 1057 (1213)
Q Consensus 1029 ~~~~~~~ld~~~~l~~D~-------~gnl~il~~~~ 1057 (1213)
.+.++.+.....+++.+. ...|.+|.++.
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 566666655445565554 33467777654
No 72
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.24 Score=55.93 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=114.1
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEeccc-c--CeEEE-EeC-CeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQF-Q--GRLLA-GIG-PVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~-~--g~ll~-~~g-~~l~i~~~~~ 971 (1213)
.+++++|+. .|.|.+|++... ..+.+.. ....++|++++-. . +.+++ +.. ..|++|++..
T Consensus 23 ~~~l~~~~~------------dg~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 23 GKRLATCSS------------DKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp SSEEEEEET------------TSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCEEEEEEC------------CCcEEEEecCCC--cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 468888763 478999999854 3333332 2457899998764 2 44444 433 5799999987
Q ss_pred ceeeceeeecCccceEEEEEEe----CCEEEEeecCCcEEEEEEeccCC-eEEEeeccCCCcceEEEEeec---------
Q 000944 972 KRLLRKCENKLFPNTIVSINTY----RDRIYVGDIQESFHFCKYRRDEN-QLYIFADDSVPRWLTAAHHID--------- 1037 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~----~~~I~vgD~~~Sv~~l~~~~~~~-~l~~~a~D~~~~~~~~~~~ld--------- 1037 (1213)
.+......+......+.++... ++++++|..-..+.++.++.... ....+ ..+...++++.+-.
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC-------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCccccccccc
Confidence 7643333333234567777654 67999999999999987765422 12222 23445566666643
Q ss_pred -----CCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeecCceeceEEEeeecCCC--
Q 000944 1038 -----FDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGG-- 1110 (1213)
Q Consensus 1038 -----~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~lg~~v~~~~~~~~~~~~-- 1110 (1213)
...++.+..+|.|.+++...... ...+.....-| ...|+++. +.+.+
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------------~~~~~~~~~~h-~~~v~~~~---~sp~~~~ 220 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQ----------------------TYVLESTLEGH-SDWVRDVA---WSPTVLL 220 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTT----------------------EEEEEEEECCC-SSCEEEEE---ECCCCSS
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCc----------------------ceeeEEEEecc-cCcEeEEE---ECCCCCC
Confidence 45678889999999998754211 11111111112 23455444 33432
Q ss_pred ccEEEEEecccceEEEE
Q 000944 1111 GESVIYGTVMGSLGAML 1127 (1213)
Q Consensus 1111 ~~~i~~~t~~Gsig~l~ 1127 (1213)
...++.++.+|.|...-
T Consensus 221 ~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWT 237 (379)
T ss_dssp SEEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCEEEEEe
Confidence 56778888999987553
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.65 E-value=0.23 Score=56.72 Aligned_cols=285 Identities=13% Similarity=0.105 Sum_probs=142.0
Q ss_pred cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEE
Q 000944 582 GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLN 661 (1213)
Q Consensus 582 ~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Ll 661 (1213)
..|.|+++.+ ...+++.|.+|++|.||++........+.. . .....++ .+. ....+|.
T Consensus 67 ~~V~~~~~sp------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h-~~~v~~~---~~s-----------~~g~~la 124 (380)
T 3iz6_a 67 GKVYSLDWTP------EKNWIVSASQDGRLIVWNALTSQKTHAIKL-H-CPWVMEC---AFA-----------PNGQSVA 124 (380)
T ss_dssp SCEEEEEECT------TSSCEEEEETTSEEEEEETTTTEEEEEEEC-C-CTTCCCC---EEC-----------TTSSEEE
T ss_pred cEEEEEEEcC------CCCEEEEEeCCCeEEEEECCCCccceEEec-C-CCCEEEE---EEC-----------CCCCEEE
Confidence 5689999865 356899999999999999843322211110 0 0111222 221 2345788
Q ss_pred EEeeCCeEEEEEEeCCC---CcccccceeeecCC-CCeEEEEEECCeeEEEEe-cCccEEEEEeC-C-eEEEEecC----
Q 000944 662 AGLQNGVLFRTVVDMVT---GQLSDSRSRFLGLR-PPKLFSVVVGGRAAMLCL-SSRPWLGYIHR-G-RFLLTPLS---- 730 (1213)
Q Consensus 662 igl~~G~l~~~~~~~~~---~~l~~~~~~~lG~~-pv~l~~~~~~~~~~v~~~-g~~p~~i~~~~-~-~~~~~~~~---- 730 (1213)
.|..||.+..|.+.... +..... ....|.. ++.-..+.-.+...++.+ ++....++.-+ + .+......
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVS-RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTC-CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EeeCCCcEEEEECCCCccccCCccce-eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 99999999888875321 111000 0011111 111000000111223332 35555555422 2 11111100
Q ss_pred -ccccceeeccccCCCCceEEEEe-CCeEEEEEEccCCCeeEEEEEe-CCCccceeeecCCCceEEEEEccCCCCCHHHH
Q 000944 731 -YETLEYAASFSSDQCVEGVVSVA-GNALRVFTIERLGETFNETALP-LRYTPRRFVLQPKKKLMVIIETDQGALTAEER 807 (1213)
Q Consensus 731 -~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~~~~~~~~~r~i~-l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~ 807 (1213)
...+.+++ ++.. .++-++..+ ++.+++-.+.... -.++.+. -...+..++++|..+.++.++.+
T Consensus 204 h~~~v~~~~-~~~~-~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--------- 270 (380)
T 3iz6_a 204 HTADVLSLS-INSL-NANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFFPDGQRFGTGSDD--------- 270 (380)
T ss_dssp CCSCEEEEE-ECSS-SCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEECTTSSEEEEECSS---------
T ss_pred CccCeEEEE-eecC-CCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEecCCCeEEEEcCC---------
Confidence 01122211 1110 122333333 5677776665321 2233332 23467788888877665544210
Q ss_pred HHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCc-----
Q 000944 808 EAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNE----- 882 (1213)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E----- 882 (1213)
.+++++|..+++.+..+...+..
T Consensus 271 ----------------------------------------------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 271 ----------------------------------------------------GTCRLFDMRTGHQLQVYNREPDRNDNEL 298 (380)
T ss_dssp ----------------------------------------------------SCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred ----------------------------------------------------CeEEEEECCCCcEEEEeccccccccccc
Confidence 25888898888777766554321
Q ss_pred -eEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE--EeecCcceEeccc-cCeEEE
Q 000944 883 -AAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK--TQVEGIPLALCQF-QGRLLA 958 (1213)
Q Consensus 883 -~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~--~~~~g~V~ai~~~-~g~ll~ 958 (1213)
.+.++ .|. ....+++.|+. .|.|++|++.... .+..+.. ....++|++++-- +|.+++
T Consensus 299 ~~v~~~---~~s--~~g~~l~~g~~------------dg~i~vwd~~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 299 PIVTSV---AFS--ISGRLLFAGYS------------NGDCYVWDTLLAE-MVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp CSCSEE---EEC--SSSSEEEEECT------------TSCEEEEETTTCC-EEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred CceEEE---EEC--CCCCEEEEEEC------------CCCEEEEECCCCc-eEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 23343 333 23468888864 4789999875431 2222211 2356889887654 455555
Q ss_pred EeC--CeEEEEecCCc
Q 000944 959 GIG--PVLRLYDLGKK 972 (1213)
Q Consensus 959 ~~g--~~l~i~~~~~~ 972 (1213)
+.+ ..|++|++...
T Consensus 361 sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EeeCCCCEEEEecCCC
Confidence 443 58999999754
No 74
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.63 E-value=0.5 Score=51.69 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=52.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+.......... ..+.++.. . ....+++++++.. .|.|.+|++... ..+..+ .
T Consensus 222 ~i~lwd~~~~~~~~~~~~~--~~v~~~~~---~--~~~~~~~~~sg~~----------d~~i~iwd~~~~-~~~~~l--~ 281 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVDAH--SQVCSILW---S--PHYKELISGHGFA----------QNQLVIWKYPTM-AKVAEL--K 281 (318)
T ss_dssp EEEEEETTTCCEEEEEECS--SCEEEEEE---E--TTTTEEEEEECTT----------TCCEEEEETTTC-CEEEEE--C
T ss_pred EEEEEecccccccccccce--eeeeeeee---c--ccccceEEEEEcC----------CCEEEEEECCCC-cEEEEE--c
Confidence 6888888777665544333 23333322 2 2235666665432 467899987643 233322 2
Q ss_pred eecCcceEeccc-cCeEEEEeC--CeEEEEecCC
Q 000944 941 QVEGIPLALCQF-QGRLLAGIG--PVLRLYDLGK 971 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~ll~~~g--~~l~i~~~~~ 971 (1213)
...++|++++-- +|.++++.+ +.|++|++.+
T Consensus 282 gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 282 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 357899998754 455555433 5899998853
No 75
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.61 E-value=1.3 Score=49.53 Aligned_cols=194 Identities=11% Similarity=0.036 Sum_probs=113.3
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEeccc-cC-eEEEEe-CCeEEEEecCCce
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQF-QG-RLLAGI-GPVLRLYDLGKKR 973 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~-~g-~ll~~~-g~~l~i~~~~~~~ 973 (1213)
.++++.|.. -|.|.+|++.... ..+.+.. ....++|++++-- ++ +|+.+. ...|++|+....+
T Consensus 117 ~~~l~s~s~------------D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 117 GNLLATCSR------------DKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183 (345)
T ss_dssp SSEEEEEET------------TSCEEEEEECTTS-CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE
T ss_pred CCEEEEEEC------------CCeEEEEECCCCC-CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC
Confidence 467777763 3678999987642 2333322 2346778877644 33 455444 3579999987665
Q ss_pred eeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCC-------------eEEEeeccCCCcceEEEEeec-
Q 000944 974 LLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDEN-------------QLYIFADDSVPRWLTAAHHID- 1037 (1213)
Q Consensus 974 l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~-------------~l~~~a~D~~~~~~~~~~~ld- 1037 (1213)
......+..+...|.++.. .+++++.|..-..+.+++...... +........+...++++.+-.
T Consensus 184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 5444444434456777765 468999999989999976532211 111112223455677776643
Q ss_pred CCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeec--CceeceEEEeeecCCCccEEE
Q 000944 1038 FDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHV--GDVVTSLQKASLVPGGGESVI 1115 (1213)
Q Consensus 1038 ~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l--g~~v~~~~~~~~~~~~~~~i~ 1115 (1213)
...++.+..++.+.++..++..... ...+......+- ...|+++. +.|.+...++
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~--------------------~~~~~~~~~~~~~h~~~V~~v~---~~p~~~~~la 320 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQ--------------------QPTFSLTAHLHQAHSQDVNCVA---WNPKEPGLLA 320 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTT--------------------SCCEEEEEEETTSSSSCEEEEE---ECSSSTTEEE
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcc--------------------eeeEEEEeeecccccCcEeEeE---EeCCCceEEE
Confidence 3457778889999999876532210 011222222221 23455544 3344445777
Q ss_pred EEecccceEEEE
Q 000944 1116 YGTVMGSLGAML 1127 (1213)
Q Consensus 1116 ~~t~~Gsig~l~ 1127 (1213)
.++.||.|..--
T Consensus 321 S~s~Dg~v~~W~ 332 (345)
T 3fm0_A 321 SCSDDGEVAFWK 332 (345)
T ss_dssp EEETTSCEEEEE
T ss_pred EcCCCCcEEEEE
Confidence 889999998554
No 76
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.58 E-value=1.6 Score=50.22 Aligned_cols=220 Identities=14% Similarity=0.110 Sum_probs=127.1
Q ss_pred CCeEEEEEEccCCCeeEEEEEeC-CCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCccccc
Q 000944 754 GNALRVFTIERLGETFNETALPL-RYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQME 832 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l-~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1213)
++.+.+-.+... -..++++. +..|..++++|..+.+++....
T Consensus 190 d~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 232 (433)
T 3bws_A 190 ANAVHVFDLKTL---AYKATVDLTGKWSKILLYDPIRDLVYCSNWI---------------------------------- 232 (433)
T ss_dssp GTEEEEEETTTC---CEEEEEECSSSSEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred CCEEEEEECCCc---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecC----------------------------------
Confidence 467777666542 23455553 4688899999988776665421
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccC
Q 000944 833 NGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFW 912 (1213)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~ 912 (1213)
...+.++|..+++.+..+.. +..+.++. +. ....++++++....
T Consensus 233 --------------------------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~---~~--~~g~~l~~~~~~~~--- 276 (433)
T 3bws_A 233 --------------------------SEDISVIDRKTKLEIRKTDK--IGLPRGLL---LS--KDGKELYIAQFSAS--- 276 (433)
T ss_dssp --------------------------TTEEEEEETTTTEEEEECCC--CSEEEEEE---EC--TTSSEEEEEEEESC---
T ss_pred --------------------------CCcEEEEECCCCcEEEEecC--CCCceEEE---Ec--CCCCEEEEEECCCC---
Confidence 02688889888877655443 33444443 32 22356777664321
Q ss_pred CCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc--cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEE
Q 000944 913 PKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF--QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIV 988 (1213)
Q Consensus 913 ~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~--~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~ 988 (1213)
.-....|.|++|++... ++. ......+.+.+++-- +.+++++. .+.|++|++...++...... ...+.
T Consensus 277 -~~~~~dg~i~~~d~~~~--~~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~ 348 (433)
T 3bws_A 277 -NQESGGGRLGIYSMDKE--KLI--DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPN 348 (433)
T ss_dssp -TTCSCCEEEEEEETTTT--EEE--EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEE
T ss_pred -ccccCCCeEEEEECCCC--cEE--eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCC
Confidence 11125789999988653 322 222344566666543 33566653 35899999987766544322 23345
Q ss_pred EEEE--eCCEEEEeecCCc-E------------EEEEEeccCCeEEEeeccCCCcceEEEEeecCC-eeeeec-CCCcEE
Q 000944 989 SINT--YRDRIYVGDIQES-F------------HFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD-TMAGAD-KFGNIY 1051 (1213)
Q Consensus 989 ~l~~--~~~~I~vgD~~~S-v------------~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D-~~gnl~ 1051 (1213)
++.. .++++++++.... + .+..|+....++...-.. ...+.++.+-.++ .+++++ .+|.+.
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 5554 4678998886542 1 455566555554333222 2345666554333 555565 489999
Q ss_pred EEecC
Q 000944 1052 FVRLP 1056 (1213)
Q Consensus 1052 il~~~ 1056 (1213)
+++.+
T Consensus 427 v~~~~ 431 (433)
T 3bws_A 427 VYRRD 431 (433)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 98875
No 77
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.58 E-value=1.6 Score=50.20 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=68.2
Q ss_pred ccEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeec-cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 540 RTIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 540 ~~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
..|.+++.. +++++.+..++.+.++.+.. +.+.. .+. -...|.|+++.+ ...+++.|..|++|.+|++
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~--~l~~h~~~V~~v~~~~------~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFER--TLKGHTDSVQDISFDH------SGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCE--EECCCSSCEEEEEECT------TSSEEEEEETTSCCCEEET
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEE--EEeccCCcEEEEEEcC------CCCEEEEEeCCCeEEEEeC
Confidence 357777765 35666666688898887653 33221 111 235689999864 3568999999999999998
Q ss_pred CCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 617 DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 617 ~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
+....+.. +......+.-+.+. ....+|+.|..||.+..|.+.
T Consensus 180 ~~~~~~~~-----~~~h~~~V~~v~~~-----------p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 180 QGFECIRT-----MHGHDHNVSSVSIM-----------PNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp TSSCEEEC-----CCCCSSCEEEEEEC-----------SSSSEEEEEETTSEEEEEETT
T ss_pred CCCceeEE-----EcCCCCCEEEEEEe-----------CCCCEEEEEeCCCeEEEEECC
Confidence 43222221 11112222222332 234578899999999888764
No 78
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.53 E-value=1.5 Score=49.20 Aligned_cols=116 Identities=10% Similarity=0.065 Sum_probs=70.2
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeec----CcceEeccc-cC-eEEEEe-C--CeEEEEecC--CceeeceeeecCccce-
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVE----GIPLALCQF-QG-RLLAGI-G--PVLRLYDLG--KKRLLRKCENKLFPNT- 986 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~----g~V~ai~~~-~g-~ll~~~-g--~~l~i~~~~--~~~l~~~~~~~~~~~~- 986 (1213)
.|+|.+|++..+ +++.+...... ..+.+++-- +| +|+++. + +.|.+|+++ ..++........ ...
T Consensus 232 ~~~v~v~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~ 308 (361)
T 3scy_A 232 GGTVIAFRYADG--MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP 308 (361)
T ss_dssp TCEEEEEEEETT--EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC
T ss_pred CCeEEEEEecCC--ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC
Confidence 467999999843 55555443221 123444322 34 565544 3 579999996 344443333321 222
Q ss_pred -EEEEEEeCCEEEEeec-CCcEEEEEEeccCCeEEEeeccCCCcceEEEEeec
Q 000944 987 -IVSINTYRDRIYVGDI-QESFHFCKYRRDENQLYIFADDSVPRWLTAAHHID 1037 (1213)
Q Consensus 987 -i~~l~~~~~~I~vgD~-~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld 1037 (1213)
-.+++..++++++++. ...+.+++++.+..++..+......-.++++.|+|
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~~ 361 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFVD 361 (361)
T ss_dssp CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEEC
T ss_pred ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEcC
Confidence 3344456789999985 46789999988788888887665545677776653
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.51 E-value=0.11 Score=60.92 Aligned_cols=117 Identities=13% Similarity=0.240 Sum_probs=67.1
Q ss_pred ccEEEEEec--C-CEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 540 RTIVKVGSN--R-LQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 540 ~~I~~as~~--~-~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
..|++.+.. + ..++....+|.|.++.+........+....=...|+|+++.+. ...+++.|..|++|.+|++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-----~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-----NTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-----CTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-----CCCEEEEEeCCCEEEEeec
Confidence 346666664 2 3555666788888876653221111111112357999998642 2568889999999999998
Q ss_pred CCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 617 DPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 617 ~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
+. ..+....... .....+.-+.+. ....+|+.|..||.+..|.++
T Consensus 195 ~~-~~~~~~~~~~--~~~~~~~~~~~~-----------~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 195 KG-NILRVFASSD--TINIWFCSLDVS-----------ASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp TS-CEEEEEECCS--SCSCCCCCEEEE-----------TTTTEEEEECSSSBEEEEESS
T ss_pred cC-CceeEEeccC--CCCccEEEEEEC-----------CCCCEEEEEeCCCcEeeeccC
Confidence 43 2333222111 111111112222 134578899999999888764
No 80
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.46 E-value=1.4 Score=48.25 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=100.5
Q ss_pred EEEEEeCCCCc----eEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCC-----
Q 000944 861 CIRVLDPRSAN----TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG----- 931 (1213)
Q Consensus 861 ~i~l~d~~~~~----~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~----- 931 (1213)
.++++|..+.. .+..+. .....|.+++. .......+++.|+. .|.|.+|++....
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~~d~~~l~s~~~------------dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDW---ASPEYGRIIASASY------------DKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEE---CCGGGCSEEEEEET------------TSCEEEEEECTTSCTTSS
T ss_pred eEEEEECCCCCCcceecceec-cCCCcEEEEEE---cCCCCCCEEEEEcC------------CCeEEEEecCCCcccccc
Confidence 56666655432 222222 23345666543 21112468887764 3779999998641
Q ss_pred ceEEEEEEE-eecCcceEecccc---Ce-EEEEe-CCeEEEEecCCceeeceeee-----------cCccceEEEEEEe-
Q 000944 932 KSLELLHKT-QVEGIPLALCQFQ---GR-LLAGI-GPVLRLYDLGKKRLLRKCEN-----------KLFPNTIVSINTY- 993 (1213)
Q Consensus 932 ~kl~~~~~~-~~~g~V~ai~~~~---g~-ll~~~-g~~l~i~~~~~~~l~~~~~~-----------~~~~~~i~~l~~~- 993 (1213)
.+.+.+... ...++|++++-.. +. |+++. ...|++|++...+....... ......+.++...
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 177 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence 233444333 4578899887653 44 44443 35899999875442221100 0012234444432
Q ss_pred ----CCEEEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEeecCC-----eeeeecCCCcEEEEecCC
Q 000944 994 ----RDRIYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHHIDFD-----TMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 994 ----~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ld~~-----~~l~~D~~gnl~il~~~~ 1057 (1213)
++++++|.....+ ++... ...++..+. -..+...++++.+-..+ .++.+..+|.|.+++...
T Consensus 178 ~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 178 SRFSPEKLAVSALEQAI-IYQRG-KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSSSCCEEEEEETTEEE-EEEEC-TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCCCCcEEEEecCCCcE-EEEcc-CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 7788888887776 33333 333432222 22345667787776553 578889999999998765
No 81
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.40 E-value=1.5 Score=47.93 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+++++|..+++.+..++-.. ..+.++. +. ...++++.|.. -|.|.+|++... ++.... .
T Consensus 209 ~i~iWd~~~~~~~~~~~~h~-~~v~~~~---~~--p~~~~l~s~s~------------Dg~i~iWd~~~~--~~~~~~-~ 267 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLEGHM-SNVSFAV---FH--PTLPIIISGSE------------DGTLKIWNSSTY--KVEKTL-N 267 (304)
T ss_dssp EEEEEETTTTEEEEEEECCS-SCEEEEE---EC--SSSSEEEEEET------------TSCEEEEETTTC--CEEEEE-C
T ss_pred eEEEEeCCCCccceeeCCCC-CCEEEEE---EC--CCCCEEEEEcC------------CCeEEEEECCCC--ceeeec-c
Confidence 79999998888776655322 3344432 33 23457776653 377889987643 322221 1
Q ss_pred eecCcceEeccc-cC---eEEEEeCCeEEEEecCC
Q 000944 941 QVEGIPLALCQF-QG---RLLAGIGPVLRLYDLGK 971 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g---~ll~~~g~~l~i~~~~~ 971 (1213)
...+.+.+++.. .| +++.+....+.+|.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp CSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred CCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 235678887744 22 36667777888888764
No 82
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.036 Score=63.98 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=57.6
Q ss_pred eCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCC-CceeEeEEeecCCCCc
Q 000944 557 SGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPD-DCMQILSVQSVSSPPE 635 (1213)
Q Consensus 557 s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~-~~l~~~~~~~l~~~p~ 635 (1213)
.++.+.++.+.................|.|+++.+ ...++++|..|+.+.+|+++.. .....+. .+.....
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~--~~~~h~~ 114 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH------NNKIIAGALDNGSLELYSTNEANNAINSMA--RFSNHSS 114 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS------SSSCEEEEESSSCEEEECCSSTTSCCCEEE--ECCCSSS
T ss_pred CCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC------CCCeEEEEccCCeEEEeecccccccccchh--hccCCcc
Confidence 46678777765322111122233456799999964 3568889999999999998531 0111111 1111111
Q ss_pred eeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeC
Q 000944 636 SLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDM 676 (1213)
Q Consensus 636 Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~ 676 (1213)
.+.-+.+.. .+..+|+.|..||.+..|.+..
T Consensus 115 ~v~~~~~~~----------~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 115 SVKTVKFNA----------KQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CCCEEEECS----------SSTTBEEEECSSSCEEBCBTTT
T ss_pred ceEEEEEcC----------CCCCEEEEEcCCCeEEEEECCC
Confidence 121122221 1245788999999998887654
No 83
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.38 E-value=1.8 Score=49.40 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=85.8
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc--cCeEEEEeC-CeEEEEecCCcee
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF--QGRLLAGIG-PVLRLYDLGKKRL 974 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~--~g~ll~~~g-~~l~i~~~~~~~l 974 (1213)
..+++.|.. .|.|.+|++... +.... -....++|++++-. +.+|+.+.. ..|++|++...+.
T Consensus 135 g~~l~s~~~------------d~~i~iwd~~~~--~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 135 GKFLATGAE------------DRLIRIWDIENR--KIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp SSEEEEEET------------TSCEEEEETTTT--EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCEEEEEcC------------CCeEEEEECCCC--cEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 467777753 367889987653 32222 12457888888754 345555544 5899999987665
Q ss_pred eceeeecCccceEEEEEE---eCCEEEEeecCCcEEEEEEeccCCeE-EEeec-----cCCCcceEEEEeecC-Ceeeee
Q 000944 975 LRKCENKLFPNTIVSINT---YRDRIYVGDIQESFHFCKYRRDENQL-YIFAD-----DSVPRWLTAAHHIDF-DTMAGA 1044 (1213)
Q Consensus 975 ~~~~~~~~~~~~i~~l~~---~~~~I~vgD~~~Sv~~l~~~~~~~~l-~~~a~-----D~~~~~~~~~~~ld~-~~~l~~ 1044 (1213)
...... ...+.++.. .++++++|..-..+.++.. ...++ ..+.. ..+...++++.+-.+ ..++.+
T Consensus 200 ~~~~~~---~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~--~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 200 SLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp EEEEEC---SSCEEEEEECSTTCCEEEEEETTSCEEEEET--TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEc---CCCcEEEEEECCCCCEEEEEcCCCcEEEEEC--CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 433222 223445544 4578999998888888543 33332 22211 224456777777544 467888
Q ss_pred cCCCcEEEEecCC
Q 000944 1045 DKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1045 D~~gnl~il~~~~ 1057 (1213)
..+|.+.++++..
T Consensus 275 s~d~~v~~wd~~~ 287 (393)
T 1erj_A 275 SLDRSVKLWNLQN 287 (393)
T ss_dssp ETTSEEEEEEC--
T ss_pred eCCCEEEEEECCC
Confidence 9999999998764
No 84
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.37 E-value=1.7 Score=48.12 Aligned_cols=171 Identities=15% Similarity=0.221 Sum_probs=104.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+++++|..+++.+..+...+.+ +.++ .+. ...++++.|+. .|.+.+|++.... +...+ .
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~-~~~~---~~s--pdg~~l~~g~~------------dg~v~i~~~~~~~-~~~~~--~ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVD-AWTL---AFS--PDSQYLATGTH------------VGKVNIFGVESGK-KEYSL--D 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTC-CCCE---EEC--TTSSEEEEECT------------TSEEEEEETTTCS-EEEEE--E
T ss_pred cEEEEECCCCCEEEEEeCCCcc-EEEE---EEC--CCCCEEEEEcC------------CCcEEEEEcCCCc-eeEEe--c
Confidence 7899998888877766654432 2232 232 33468888763 4788899876542 21111 1
Q ss_pred eecCcceEeccc-cCe-EEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccC
Q 000944 941 QVEGIPLALCQF-QGR-LLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDE 1015 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~-ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~ 1015 (1213)
.....|++++-- +|+ |+++. ...|++|++...+++..... ....+.++.. .+++++.|..-..+.++..+. .
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~ 238 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-A 238 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-C
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-c
Confidence 234567776543 344 44443 35899999987766543222 2334455544 567999998888888865432 2
Q ss_pred CeEEEeeccCCCcceEEEEee-cCCeeeeecCCCcEEEEecCC
Q 000944 1016 NQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1016 ~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
..+..+. .+..+++++.+- +...++.+..+|.+.+++...
T Consensus 239 ~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 239 NLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp CEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 2222222 244567777765 444678888999999998753
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.34 E-value=0.22 Score=58.06 Aligned_cols=145 Identities=8% Similarity=0.087 Sum_probs=89.0
Q ss_pred eEEEEEeeecCccCCCCCCcccEEEEEEEEeCC---ceEEEEEE-EeecCcceEeccc--cCeEEEEe--CCeEEEEecC
Q 000944 899 TLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG---KSLELLHK-TQVEGIPLALCQF--QGRLLAGI--GPVLRLYDLG 970 (1213)
Q Consensus 899 ~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~---~kl~~~~~-~~~~g~V~ai~~~--~g~ll~~~--g~~l~i~~~~ 970 (1213)
.+++.|.. .|.|.+|++...+ ..+..... ....++|.+++-. ++.++++. ..+|++|++.
T Consensus 195 ~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 195 GYLLSASD------------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp TEEEEECT------------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeC------------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 37777753 4789999987631 22222222 2456788888754 45555543 3689999998
Q ss_pred Cce-eeceeeecCccceEEEEEEe--CC-EEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCC--eeeee
Q 000944 971 KKR-LLRKCENKLFPNTIVSINTY--RD-RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD--TMAGA 1044 (1213)
Q Consensus 971 ~~~-l~~~~~~~~~~~~i~~l~~~--~~-~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~--~~l~~ 1044 (1213)
..+ ......+......+.++... +. ++++|..-..|.++.++.....+..+.. +...++++.+-..+ .++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~ 340 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASS 340 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEE
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEE
Confidence 542 11112222234567777664 33 6788988888888776543333333332 34567777765433 36778
Q ss_pred cCCCcEEEEecCC
Q 000944 1045 DKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1045 D~~gnl~il~~~~ 1057 (1213)
..+|.|.++++..
T Consensus 341 ~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 341 GTDRRLHVWDLSK 353 (430)
T ss_dssp ETTSCCEEEEGGG
T ss_pred eCCCcEEEEeCCC
Confidence 8899999999875
No 86
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.32 E-value=1.6 Score=47.86 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCeEEEEEEccCCCeeEEEEEeCCC---ccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCccc
Q 000944 754 GNALRVFTIERLGETFNETALPLRY---TPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQ 830 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l~~---tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1213)
++.+.+-.+.. .-..++++++. .|+.++++|..+.+++....
T Consensus 10 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-------------------------------- 54 (337)
T 1pby_B 10 PDKLVVIDTEK---MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK-------------------------------- 54 (337)
T ss_dssp TTEEEEEETTT---TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--------------------------------
T ss_pred CCeEEEEECCC---CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC--------------------------------
Confidence 46776655543 24567888888 79999999988776665421
Q ss_pred ccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCC-C---ceEEEEEEEEeccCCCceEEEEEee
Q 000944 831 MENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQD-N---EAAFSICTVNFHDKEHGTLLAVGTA 906 (1213)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~-~---E~v~s~~~~~l~~~~~~~~i~VGT~ 906 (1213)
...+.++|..+++.+..+.+.. + +.+.++ .+.. ...+++++..
T Consensus 55 ----------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~--dg~~l~~~~~ 101 (337)
T 1pby_B 55 ----------------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGA---ALSP--DGKTLAIYES 101 (337)
T ss_dssp ----------------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCE---EECT--TSSEEEEEEE
T ss_pred ----------------------------CCeEEEEECCCCCeEeeEEcCCcccccccccce---EECC--CCCEEEEEec
Confidence 0157888888888877777643 1 122222 2332 2345555543
Q ss_pred ecCccCCCCCC--cccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC-eEEEEeCCeEEEEecCCceeec
Q 000944 907 KGLQFWPKRNI--VAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG-RLLAGIGPVLRLYDLGKKRLLR 976 (1213)
Q Consensus 907 ~~~~~~~e~~~--~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~g~~l~i~~~~~~~l~~ 976 (1213)
.... ..+.. ..|+|++|++... +.. ........+.+++-- +| +|+++ ++.|++|++...++..
T Consensus 102 ~~~~--~~~~~~~~~~~i~v~d~~~~--~~~--~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 102 PVRL--ELTHFEVQPTRVALYDAETL--SRR--KAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVE 168 (337)
T ss_dssp EEEE--CSSCEEECCCEEEEEETTTT--EEE--EEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEE
T ss_pred cccc--ccccccccCceEEEEECCCC--cEE--EEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEee
Confidence 2111 01111 3588999987532 322 222334556555432 34 46666 7889999998766543
No 87
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.31 E-value=0.17 Score=57.16 Aligned_cols=212 Identities=8% Similarity=0.031 Sum_probs=120.2
Q ss_pred EEEEEeCCCCceEEEEEc---CCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 861 CIRVLDPRSANTTCLLEL---QDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~---~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
+|+++|..+++.+....+ .....|.|+. |. ...++++.|.. .|.|.+|++... +....
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~---~s--pdg~~l~sgs~------------d~~i~iwd~~~~--~~~~~ 164 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVS---VL--SSGTQAVSGSK------------DICIKVWDLAQQ--VVLSS 164 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEE---EC--TTSSEEEEEET------------TSCEEEEETTTT--EEEEE
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEE---EC--CCCCEEEEEeC------------CCeEEEEECCCC--cEEEE
Confidence 799999888775544332 3345666654 33 23468887764 367889988653 32211
Q ss_pred EEEeecCcceEeccc--cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe---CCEEEEeecCCcEEEEE
Q 000944 938 HKTQVEGIPLALCQF--QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY---RDRIYVGDIQESFHFCK 1010 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~--~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~---~~~I~vgD~~~Sv~~l~ 1010 (1213)
. ....++|++++-. +..++++. .+.|++|++...+.............++++... +++++.|..-..|.++.
T Consensus 165 ~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 165 Y-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp E-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred E-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 1 2357899888754 33455433 368999999865543322111123345666643 45778888888888865
Q ss_pred EeccCCeEEEeeccCCCcceEEEEeecC-Ce-eeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceee
Q 000944 1011 YRRDENQLYIFADDSVPRWLTAAHHIDF-DT-MAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEE 1088 (1213)
Q Consensus 1011 ~~~~~~~l~~~a~D~~~~~~~~~~~ld~-~~-~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 1088 (1213)
.+... .+..+. .+...++++.|-.+ .. ++.+..+|.|.+++... ++.+..
T Consensus 244 ~~~~~-~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------------------------~~~~~~ 295 (344)
T 4gqb_B 244 TKSTS-CVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------------------------SELFRS 295 (344)
T ss_dssp SCC---CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-------------------------CEEEEE
T ss_pred CCCCc-EEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------------------CcEEEE
Confidence 54322 222221 23456777777533 34 45678899999986532 111111
Q ss_pred eeeeecCceeceEEEeeecCCCccEEEEEecccceEEE
Q 000944 1089 IVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAM 1126 (1213)
Q Consensus 1089 ~~~~~lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l 1126 (1213)
.-| .+.|+++. +.+.+...+..++.||.|..-
T Consensus 296 --~~H-~~~V~~v~---~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 296 --QAH-RDFVRDAT---WSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp --CCC-SSCEEEEE---ECSSSTTEEEEEETTSCEEEE
T ss_pred --cCC-CCCEEEEE---EeCCCCeEEEEEcCCCeEEEE
Confidence 112 23455544 345455555567889999744
No 88
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.29 E-value=2.1 Score=48.41 Aligned_cols=211 Identities=10% Similarity=0.150 Sum_probs=124.1
Q ss_pred CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccC
Q 000944 754 GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMEN 833 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1213)
++.+++-.+.. .-..+.++....|+.++++|..+.+++....
T Consensus 11 d~~v~v~d~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------------------------- 52 (391)
T 1l0q_A 11 SDNISVIDVTS---NKVTATIPVGSNPMGAVISPDGTKVYVANAH----------------------------------- 52 (391)
T ss_dssp TTEEEEEETTT---TEEEEEEECSSSEEEEEECTTSSEEEEEEGG-----------------------------------
T ss_pred CCEEEEEECCC---CeEEEEeecCCCcceEEECCCCCEEEEECCC-----------------------------------
Confidence 46777776654 2346677888889999999988876555421
Q ss_pred CCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCC
Q 000944 834 GDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWP 913 (1213)
Q Consensus 834 ~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~ 913 (1213)
...++++|..+++.+..+.... .+.++. +. ...++++++..
T Consensus 53 -------------------------d~~i~v~d~~~~~~~~~~~~~~--~v~~~~---~s--pdg~~l~~~~~------- 93 (391)
T 1l0q_A 53 -------------------------SNDVSIIDTATNNVIATVPAGS--SPQGVA---VS--PDGKQVYVTNM------- 93 (391)
T ss_dssp -------------------------GTEEEEEETTTTEEEEEEECSS--SEEEEE---EC--TTSSEEEEEET-------
T ss_pred -------------------------CCeEEEEECCCCeEEEEEECCC--CccceE---EC--CCCCEEEEEEC-------
Confidence 0268899998888877766544 555543 32 22356655532
Q ss_pred CCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC-eEEEEeC--CeEEEEecCCceeeceeeecCccceEEE
Q 000944 914 KRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG-RLLAGIG--PVLRLYDLGKKRLLRKCENKLFPNTIVS 989 (1213)
Q Consensus 914 e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~g--~~l~i~~~~~~~l~~~~~~~~~~~~i~~ 989 (1213)
..|.|++|++... +.. ......+.+.+++-- +| +|+++.+ +.|++|++...+........ ..+.+
T Consensus 94 ----~~~~v~v~d~~~~--~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~ 162 (391)
T 1l0q_A 94 ----ASSTLSVIDTTSN--TVA--GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSPKG 162 (391)
T ss_dssp ----TTTEEEEEETTTT--EEE--EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SSEEE
T ss_pred ----CCCEEEEEECCCC--eEE--EEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CCcce
Confidence 1378999987653 332 222345566776543 33 4644443 58999999877665443322 22344
Q ss_pred EEE--eCCEEEEeecCC-cEEEEEEeccCCeEEEeeccCCCcceEEEEeecC-Ceeeeec---CCCcEEEEecC
Q 000944 990 INT--YRDRIYVGDIQE-SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF-DTMAGAD---KFGNIYFVRLP 1056 (1213)
Q Consensus 990 l~~--~~~~I~vgD~~~-Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D---~~gnl~il~~~ 1056 (1213)
+.. .+++++++.... .+.+ |+....+....... ...+.++.+-.+ ..++++. .++.+.+++..
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~--~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISV--IDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCCEEEE--EECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 443 467886665554 4544 55444444333222 234555555433 3555555 68889888764
No 89
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.26 E-value=0.68 Score=52.12 Aligned_cols=174 Identities=9% Similarity=0.068 Sum_probs=101.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+++++|..+++.+..+.- ....|.++. +.. ....+++.|.. -|.|.+|++... ..+..+...
T Consensus 150 ~i~iwd~~~~~~~~~~~~-h~~~V~~~~---~~~-~~~~~l~s~s~------------D~~v~iwd~~~~-~~~~~~~~~ 211 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRA-HAAQVTCVA---ASP-HKDSVFLSCSE------------DNRILLWDTRCP-KPASQIGCS 211 (344)
T ss_dssp CEEEEETTTTEEEEEECC-CSSCEEEEE---ECS-SCTTEEEEEET------------TSCEEEEETTSS-SCEEECC--
T ss_pred eEEEEECCCCcEEEEEcC-cCCceEEEE---ecC-CCCCceeeecc------------cccccccccccc-ceeeeeecc
Confidence 588999888887765532 234555543 322 23345555542 267889987654 233333333
Q ss_pred eecCcceEeccc--cCeEEE-Ee-CCeEEEEecCCceeeceeeecCccceEEEEEEe--C-CEEEEeecCCcEEEEEEec
Q 000944 941 QVEGIPLALCQF--QGRLLA-GI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY--R-DRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 941 ~~~g~V~ai~~~--~g~ll~-~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~--~-~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
.....+++++-. ++++++ +. ...|++|++...+.+..-. .+...|.++... + ++|+.|..-..|.+ |+.
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~v--wd~ 287 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAV--LDS 287 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEE--ECT
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEE--EEC
Confidence 344567776644 556655 33 3589999998766544322 234467777653 3 46777877778877 454
Q ss_pred cCCeEEEeeccCCCcceEEEEee-cCCeee-eecCCCcEEEEecCCC
Q 000944 1014 DENQLYIFADDSVPRWLTAAHHI-DFDTMA-GADKFGNIYFVRLPQD 1058 (1213)
Q Consensus 1014 ~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l-~~D~~gnl~il~~~~~ 1058 (1213)
...++..+ ..+...++++.|- +...++ .+-.+|.|.+..++.+
T Consensus 288 ~~~~~~~~--~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 288 SLSELFRS--QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TCCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCcEEEE--cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 45555443 2355678888774 444554 5678999999988763
No 90
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.24 E-value=0.67 Score=52.29 Aligned_cols=166 Identities=11% Similarity=0.115 Sum_probs=100.6
Q ss_pred cEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeCCeEEEEecCCc-eeeceeeecCccceEEEEEEeCCEEE
Q 000944 920 GYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKK-RLLRKCENKLFPNTIVSINTYRDRIY 998 (1213)
Q Consensus 920 Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g~~l~i~~~~~~-~l~~~~~~~~~~~~i~~l~~~~~~I~ 998 (1213)
|.+.+|++..+ + .+......++|.+++.-.+.++++..+++++|++... +.+..... +..+.++.. ++++
T Consensus 81 ~~v~iWd~~~~--~--~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 81 EVVHIWDDVKK--Q--DVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp TEEEEEETTTT--E--EEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred cEEEEEECCCC--c--EEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 48889987654 2 2334457889999998888999999999999999865 44332111 223344443 6666
Q ss_pred E--eecCCcEEEEEEeccC------C-----e----EEEeeccCCCcceEEEEeecC-CeeeeecCCCc-EEEEecCCCC
Q 000944 999 V--GDIQESFHFCKYRRDE------N-----Q----LYIFADDSVPRWLTAAHHIDF-DTMAGADKFGN-IYFVRLPQDV 1059 (1213)
Q Consensus 999 v--gD~~~Sv~~l~~~~~~------~-----~----l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gn-l~il~~~~~~ 1059 (1213)
+ |..-..+.++..+... . . +..+ ..+...++++.+-.+ ..++.+..+|. +.+++...
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-- 227 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-- 227 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEE--CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT--
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC--
Confidence 6 5666677776654321 0 0 1222 224455777776543 45777889998 99987653
Q ss_pred CcccccCCCCCccccccCccCCcccceeeeeeee---cCceeceEEEeeecCCCccEEEEEecccceEEEEec
Q 000944 1060 SDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFH---VGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAF 1129 (1213)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~---lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l~~l 1129 (1213)
+..+ ..+. ....|+++. +.+ +...++.++.+|.|... .+
T Consensus 228 -----------------------~~~~---~~~~~g~h~~~v~~~~---~s~-~~~~l~s~s~d~~v~iw-~~ 269 (355)
T 3vu4_A 228 -----------------------GVLV---REFRRGLDRADVVDMK---WST-DGSKLAVVSDKWTLHVF-EI 269 (355)
T ss_dssp -----------------------CCEE---EEEECTTCCSCEEEEE---ECT-TSCEEEEEETTCEEEEE-ES
T ss_pred -----------------------CcEE---EEEEcCCCCCcEEEEE---ECC-CCCEEEEEECCCEEEEE-Ec
Confidence 1121 2232 233455544 333 34567788899998854 44
No 91
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.21 E-value=0.83 Score=51.21 Aligned_cols=147 Identities=11% Similarity=0.011 Sum_probs=90.7
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCe-EEEEe-CCeEEEEecCCcee
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGR-LLAGI-GPVLRLYDLGKKRL 974 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~-ll~~~-g~~l~i~~~~~~~l 974 (1213)
..+++.|.. -|.|.+|++..+....+........++|++++-- +|. |+.+. ...+.+|++...++
T Consensus 28 g~~las~~~------------D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 28 GTLLASCGG------------DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF 95 (345)
T ss_dssp SSCEEEEET------------TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E
T ss_pred CCEEEEEcC------------CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe
Confidence 467777653 3678999987652222333334567889888653 344 44443 35899999886654
Q ss_pred eceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeec-CCeeeeecCCCcEE
Q 000944 975 LRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHID-FDTMAGADKFGNIY 1051 (1213)
Q Consensus 975 ~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld-~~~~l~~D~~gnl~ 1051 (1213)
.....+..+...|.++.. .+++++.|..-..+.++..+.....-....-..+...++++.+-. ...++.+..+|.+.
T Consensus 96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence 333334333445667665 478999999999999987765432111111122344566766643 34577888999999
Q ss_pred EEecC
Q 000944 1052 FVRLP 1056 (1213)
Q Consensus 1052 il~~~ 1056 (1213)
+++..
T Consensus 176 ~w~~~ 180 (345)
T 3fm0_A 176 LYREE 180 (345)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98764
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.09 E-value=0.18 Score=58.83 Aligned_cols=151 Identities=7% Similarity=-0.048 Sum_probs=91.9
Q ss_pred eEEEEEeeecCccCCCCCCcccEEEEEEEEe------------------------CCceEEEEEEEeecCcceEecccc-
Q 000944 899 TLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE------------------------EGKSLELLHKTQVEGIPLALCQFQ- 953 (1213)
Q Consensus 899 ~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~------------------------~~~kl~~~~~~~~~g~V~ai~~~~- 953 (1213)
.+++|||--. . ..-.|+++++.- ...+++........++|++++-..
T Consensus 68 ~~~~~GT~t~------~--~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 139 (430)
T 2xyi_A 68 HRLILGTHTS------D--EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQ 139 (430)
T ss_dssp EEEEEECCCS------S--SCEEEEEEEEEEC--------------------------CEEEEEEEEESSCCSEEEEETT
T ss_pred EEEEEEEcCC------C--CCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCC
Confidence 7888998531 1 456777777640 012677777778899999987764
Q ss_pred -CeEEEEeC--CeEEEEecCCc--------eeeceeeecCccceEEEEEEe--CC-EEEEeecCCcEEEEEEeccC---C
Q 000944 954 -GRLLAGIG--PVLRLYDLGKK--------RLLRKCENKLFPNTIVSINTY--RD-RIYVGDIQESFHFCKYRRDE---N 1016 (1213)
Q Consensus 954 -g~ll~~~g--~~l~i~~~~~~--------~l~~~~~~~~~~~~i~~l~~~--~~-~I~vgD~~~Sv~~l~~~~~~---~ 1016 (1213)
+.++++.+ ..|++|++... +......+..+...+.+|... ++ +++.|..-..|.++..+... .
T Consensus 140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 219 (430)
T 2xyi_A 140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219 (430)
T ss_dssp EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG
T ss_pred CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 45666544 47999999741 122222222233345556553 44 99999998999997765421 1
Q ss_pred eEEEee-ccCCCcceEEEEeec-C-CeeeeecCCCcEEEEecCC
Q 000944 1017 QLYIFA-DDSVPRWLTAAHHID-F-DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1017 ~l~~~a-~D~~~~~~~~~~~ld-~-~~~l~~D~~gnl~il~~~~ 1057 (1213)
.+.... -..+...+.++.+-. . ..++.+..+|.|.+++...
T Consensus 220 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 111111 112344566666643 3 3566778899999998764
No 93
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.04 E-value=2.4 Score=46.79 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=104.1
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+++++..+.+....+.-. ...+.++. +. ....+++.|+. .|.|.+|++... ++.... .
T Consensus 145 ~v~i~~~~~~~~~~~~~~~-~~~v~~~~---~s--pdg~~lasg~~------------dg~i~iwd~~~~--~~~~~~-~ 203 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDTR-GKFILSIA---YS--PDGKYLASGAI------------DGIINIFDIATG--KLLHTL-E 203 (321)
T ss_dssp EEEEEETTTCSEEEEEECS-SSCEEEEE---EC--TTSSEEEEEET------------TSCEEEEETTTT--EEEEEE-C
T ss_pred cEEEEEcCCCceeEEecCC-CceEEEEE---EC--CCCCEEEEEcC------------CCeEEEEECCCC--cEEEEE-c
Confidence 5777787776665544432 34455543 32 23468888864 367889987643 322111 2
Q ss_pred eecCcceEeccc-cCeEEEEeC--CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccC
Q 000944 941 QVEGIPLALCQF-QGRLLAGIG--PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDE 1015 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~ 1015 (1213)
...++|++++-- ++.++++.+ ..|++|++...++.... ......+.++.. .+.+++.|..-..+.++... .
T Consensus 204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~--~ 279 (321)
T 3ow8_A 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG--T 279 (321)
T ss_dssp CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--T
T ss_pred ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--C
Confidence 356788887654 455555443 47999999876654432 223445677665 46789999888888885543 3
Q ss_pred CeEEEeeccCCCcceEEEEeecC-CeeeeecCCCcEEEEecC
Q 000944 1016 NQLYIFADDSVPRWLTAAHHIDF-DTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1016 ~~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gnl~il~~~ 1056 (1213)
.+....-. .+...++++.+-.+ ..++.+..+|.|.+++.+
T Consensus 280 ~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 280 RTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 33322211 23445777777544 467888899999998764
No 94
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.03 E-value=2.4 Score=46.61 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=82.6
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.-. ...|.++. +. ...++++.|+. .|.|.+|++... +.+...
T Consensus 196 ~i~i~d~~~~~~~~~~~~h-~~~v~~~~---~s--~~~~~l~s~s~------------Dg~i~iwd~~~~----~~~~~~ 253 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIGH-TGYLNTVT---VS--PDGSLCASGGK------------DGQAMLWDLNEG----KHLYTL 253 (340)
T ss_dssp CEEEEETTTTEEEEEECCC-SSCEEEEE---EC--TTSSEEEEEET------------TCEEEEEETTTT----EEEEEE
T ss_pred EEEEEECCCCceeeEecCC-CCcEEEEE---EC--CCCCEEEEEeC------------CCeEEEEEeccC----ceeeee
Confidence 5888888888776655322 23455554 33 23468888764 378999987643 334445
Q ss_pred eecCcceEecccc-CeEEE-EeCCeEEEEecCCceeecee-------eecCccceEEEEEE--eCCEEEEeecCCcEEEE
Q 000944 941 QVEGIPLALCQFQ-GRLLA-GIGPVLRLYDLGKKRLLRKC-------ENKLFPNTIVSINT--YRDRIYVGDIQESFHFC 1009 (1213)
Q Consensus 941 ~~~g~V~ai~~~~-g~ll~-~~g~~l~i~~~~~~~l~~~~-------~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l 1009 (1213)
....+|.+++.-. +++++ +.+..|++|++....+.... .....+..|+++.. .+++|+.|..-..|.++
T Consensus 254 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 254 DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 5667888876653 45544 56679999999865443221 11122445667665 46799999888888887
Q ss_pred EEec
Q 000944 1010 KYRR 1013 (1213)
Q Consensus 1010 ~~~~ 1013 (1213)
+...
T Consensus 334 ~~~t 337 (340)
T 4aow_A 334 QVTI 337 (340)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 7654
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.00 E-value=3.2 Score=47.77 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=135.8
Q ss_pred CCEEEEEEeCCEEEEEEEccCCCeEEeeeec-cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEE
Q 000944 549 RLQVVIALSGGELIYFEVDMTGQLLEVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSV 627 (1213)
Q Consensus 549 ~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~ 627 (1213)
++.+++++ |++|.+.... +|++...-... -...|+|+++.+ ...++++|+.|++|.||++.....+...
T Consensus 116 ~n~lAvgl-d~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fsp------dg~~lasgs~Dg~v~iWd~~~~~~~~~~-- 185 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTSSAEVQLWDVQQQKRLRNM-- 185 (420)
T ss_dssp TSEEEEEE-TTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECT------TSSEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred CCEEEEEe-CCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECC------CCCEEEEEECCCeEEEEEcCCCcEEEEE--
Confidence 34556665 7788877654 45544332222 234699999965 3578999999999999998533222211
Q ss_pred eecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeee-c-CCCCeEEEEEECCee
Q 000944 628 QSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFL-G-LRPPKLFSVVVGGRA 705 (1213)
Q Consensus 628 ~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~l-G-~~pv~l~~~~~~~~~ 705 (1213)
......+..+.. ....|..|..||.+..+....... ....+ | ..++....+...+..
T Consensus 186 ---~~h~~~v~~~s~-------------~~~~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 186 ---TSHSARVGSLSW-------------NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp ---CCCSSCEEEEEE-------------ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTSSE
T ss_pred ---eCCCCceEEEee-------------CCCEEEEEeCCCceeEeeecccce-----eeEEecccccceeeeeecCCCCe
Confidence 111111111121 234688999999987776533211 11111 1 111111111111221
Q ss_pred EEEEecCccEEEEEeC-Ce-----EEEEecCccccceeeccccCCCCceEEEEe---CCeEEEEEEccCCCeeEEEEEeC
Q 000944 706 AMLCLSSRPWLGYIHR-GR-----FLLTPLSYETLEYAASFSSDQCVEGVVSVA---GNALRVFTIERLGETFNETALPL 776 (1213)
Q Consensus 706 ~v~~~g~~p~~i~~~~-~~-----~~~~~~~~~~v~~~~~f~~~~~~~~~i~~~---~~~L~i~~l~~~~~~~~~r~i~l 776 (1213)
.+....+....++... +. +....-....+.+++ |+.. .++.++..+ ++.+++-.+.. .-....+..
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~p~-~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~ 319 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-WCPW-QSNVLATGGGTSDRHIRIWNVCS---GACLSAVDA 319 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE-ECTT-CTTEEEEEECTTTCEEEEEETTT---TEEEEEEEC
T ss_pred eeeeeccccceEEeeccccccceeeeeecccCCceeeee-eCCC-cccEEEEEeecCCCEEEEEeCCc---cccceeecc
Confidence 2222234444444321 11 111111111122211 1111 112233333 35777766554 345667777
Q ss_pred CCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCC
Q 000944 777 RYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESD 856 (1213)
Q Consensus 777 ~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 856 (1213)
...+..+++++..+.+++++.. .
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg~----------------------------------------------------~----- 342 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHGF----------------------------------------------------A----- 342 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEECT----------------------------------------------------T-----
T ss_pred ccceeeeeecCCCCeEEEEEec----------------------------------------------------C-----
Confidence 7788888888887776665310 0
Q ss_pred ceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEe
Q 000944 857 KWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE 929 (1213)
Q Consensus 857 ~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~ 929 (1213)
-..|+++|..+++.+..+.= ....|++++ +. ....+|+.|.. -|.|.+|++.+
T Consensus 343 --d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~---~s--pdg~~l~S~s~------------D~tvriWdv~~ 395 (420)
T 4gga_A 343 --QNQLVIWKYPTMAKVAELKG-HTSRVLSLT---MS--PDGATVASAAA------------DETLRLWRCFE 395 (420)
T ss_dssp --TCCEEEEETTTCCEEEEECC-CSSCEEEEE---EC--TTSSCEEEEET------------TTEEEEECCSC
T ss_pred --CCEEEEEECCCCcEEEEEcC-CCCCEEEEE---Ec--CCCCEEEEEec------------CCeEEEEECCC
Confidence 02588999888888776542 224566654 32 22356666543 26789998865
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.00 E-value=2.8 Score=47.07 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=101.6
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+++.. .+.++. +. .+.+++++ .|++++|++......+..+..
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~--~v~~v~---~~----~~~~~~~~-------------~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDA--PVKDLF---LS----REFIVVSY-------------GDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp EEEEEETTTTEEEEEEECSS--CEEEEE---EC----SSEEEEEE-------------TTEEEEEESSTTCCBSSCCEE-
T ss_pred EEEEEECCCCcEEEEEECCC--ceEEEE---Ec----CCEEEEEE-------------cCEEEEEECCCCceeeEEecc-
Confidence 79999999999888887643 555543 32 23445543 257889998764122222111
Q ss_pred eecCcceEeccccCeEEEEeC---CeEEEEecCCce-------------eec-eeeecCccceEEEEEE--eCCEEEEee
Q 000944 941 QVEGIPLALCQFQGRLLAGIG---PVLRLYDLGKKR-------------LLR-KCENKLFPNTIVSINT--YRDRIYVGD 1001 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~g---~~l~i~~~~~~~-------------l~~-~~~~~~~~~~i~~l~~--~~~~I~vgD 1001 (1213)
+..+.++.. ++++++.| ..|++|++...+ +.+ ...+..+...|.++.. .+++++.|.
T Consensus 139 --~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 --FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp --EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 233444444 56665533 479999998533 111 2223333445666665 567899998
Q ss_pred cCCc-EEEEEEeccCCeEEEeeccCCCcceEEEEeecC-CeeeeecCCCcEEEEecCCC
Q 000944 1002 IQES-FHFCKYRRDENQLYIFADDSVPRWLTAAHHIDF-DTMAGADKFGNIYFVRLPQD 1058 (1213)
Q Consensus 1002 ~~~S-v~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gnl~il~~~~~ 1058 (1213)
.-.. +.++..+. ...+..+.+..+...++++.+-.+ ..++.+..+|.+.++++...
T Consensus 215 ~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 215 QDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8887 87754432 334444433335567888777544 45677888999999998653
No 97
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.99 E-value=0.076 Score=60.37 Aligned_cols=214 Identities=8% Similarity=0.039 Sum_probs=117.6
Q ss_pred EEEEEeCCCCceEE--EEEc-CCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 861 CIRVLDPRSANTTC--LLEL-QDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~--~~~~-~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
+|+++|..+++... .+.. .....|.|+.. . ...++++.|.. .|.|.+|++... +....
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~---s--pdg~~l~sgs~------------dg~v~iwd~~~~--~~~~~ 176 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSV---F--SDGTQAVSGGK------------DFSVKVWDLSQK--AVLKS 176 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEE---C--SSSSEEEEEET------------TSCEEEEETTTT--EEEEE
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEE---C--CCCCEEEEEeC------------CCeEEEEECCCC--cEEEE
Confidence 57888776665432 2222 22345666543 2 23467777753 467888987653 32222
Q ss_pred EEEeecCcceEeccc--cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe---CCEEEEeecCCcEEEEE
Q 000944 938 HKTQVEGIPLALCQF--QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY---RDRIYVGDIQESFHFCK 1010 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~--~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~---~~~I~vgD~~~Sv~~l~ 1010 (1213)
. ....++|++++-. ++.++++. ...|++|++...+.............++++... ++++++|+.-..|.++.
T Consensus 177 ~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 177 Y-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp E-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred E-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence 1 2356889888653 33344433 358999999865543332222223456777653 46788999888898866
Q ss_pred EeccCCeEEEeeccCCCcceEEEEee-cCCe-eeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccCCcccceee
Q 000944 1011 YRRDENQLYIFADDSVPRWLTAAHHI-DFDT-MAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEE 1088 (1213)
Q Consensus 1011 ~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~-~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 1088 (1213)
.+.. ..+..+. .+...++++.+- +... ++.+..+|.|.+++... ++.+..
T Consensus 256 ~~~~-~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-------------------------~~~~~~ 307 (357)
T 4g56_B 256 IKNP-DSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-------------------------SEVFRD 307 (357)
T ss_dssp SSCG-GGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-------------------------CEEEEE
T ss_pred CCCC-cEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-------------------------CcEeEE
Confidence 5432 2222222 234457777664 4444 45678899999987542 222221
Q ss_pred eeeeecCceeceEEEeeecCCCccEEEEEecccceEEEEec
Q 000944 1089 IVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAF 1129 (1213)
Q Consensus 1089 ~~~~~lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l~~l 1129 (1213)
. ...+.|+++. +.|.+...++.++.||.|... .+
T Consensus 308 ~---~H~~~V~~va---fsP~d~~~l~s~s~Dg~v~iW-~~ 341 (357)
T 4g56_B 308 L---SHRDFVTGVA---WSPLDHSKFTTVGWDHKVLHH-HL 341 (357)
T ss_dssp C---CCSSCEEEEE---ECSSSTTEEEEEETTSCEEEE-EC
T ss_pred C---CCCCCEEEEE---EeCCCCCEEEEEcCCCeEEEE-EC
Confidence 1 1234565543 445455677888999999854 45
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.94 E-value=0.31 Score=55.56 Aligned_cols=142 Identities=8% Similarity=0.036 Sum_probs=88.1
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc----cC-eEEEEe-CCeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF----QG-RLLAGI-GPVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~----~g-~ll~~~-g~~l~i~~~~~ 971 (1213)
..+++.|+. .|.|.+|++... +. +......+++.+++.. ++ .++++. +..|++|++..
T Consensus 112 ~~~l~s~~~------------d~~i~iwd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 112 TGMFTSSSF------------DKTLKVWDTNTL--QT--ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TTCEEEEET------------TSEEEEEETTTT--EE--EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred CcEEEEEeC------------CCeEEEeeCCCC--cc--ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 456776653 478999988753 32 2233467777776554 22 344433 35899999986
Q ss_pred ceeeceeeecCccceEEEEEEe--CC-EEEEeecCCcEEEEEEeccCCeEEEeec-------------cCCCcceEEEEe
Q 000944 972 KRLLRKCENKLFPNTIVSINTY--RD-RIYVGDIQESFHFCKYRRDENQLYIFAD-------------DSVPRWLTAAHH 1035 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~--~~-~I~vgD~~~Sv~~l~~~~~~~~l~~~a~-------------D~~~~~~~~~~~ 1035 (1213)
.+....- ......+.++... ++ .+++|..-..+.++..+.....+..+.. ..+...++++.+
T Consensus 176 ~~~~~~~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 176 GSCSHIL--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SCCCEEE--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred cceeeee--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 6544332 2234467777764 34 5788988888888766543333333311 234455677766
Q ss_pred ecC-CeeeeecCCCcEEEEecCC
Q 000944 1036 IDF-DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1036 ld~-~~~l~~D~~gnl~il~~~~ 1057 (1213)
-.+ ..++.+..+|.+.+++...
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEecCCCeEEEEECCC
Confidence 544 4678889999999999865
No 99
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.89 E-value=0.97 Score=51.71 Aligned_cols=173 Identities=13% Similarity=0.200 Sum_probs=99.8
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.++++|..+++.+..+.- ....|.++. +. ....+++.|.. .|.+.+|++... +... ..
T Consensus 146 ~i~iwd~~~~~~~~~~~~-h~~~v~~~~---~~--p~~~~l~s~s~------------d~~v~iwd~~~~--~~~~--~~ 203 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQG-HEQDIYSLD---YF--PSGDKLVSGSG------------DRTVRIWDLRTG--QCSL--TL 203 (393)
T ss_dssp CEEEEETTTTEEEEEECC-CSSCEEEEE---EC--TTSSEEEEEET------------TSEEEEEETTTT--EEEE--EE
T ss_pred eEEEEECCCCcEEEEEcc-CCCCEEEEE---Ec--CCCCEEEEecC------------CCcEEEEECCCC--eeEE--EE
Confidence 578888887766554332 223455543 32 22356776653 378899987654 3222 22
Q ss_pred eecCcceEeccc--cCeEEEEe--CCeEEEEecCCceeeceee-----ecCccceEEEEEE--eCCEEEEeecCCcEEEE
Q 000944 941 QVEGIPLALCQF--QGRLLAGI--GPVLRLYDLGKKRLLRKCE-----NKLFPNTIVSINT--YRDRIYVGDIQESFHFC 1009 (1213)
Q Consensus 941 ~~~g~V~ai~~~--~g~ll~~~--g~~l~i~~~~~~~l~~~~~-----~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l 1009 (1213)
...+.|++++-. +|.++++. ...|++|+....++..... ...+...+.++.. .+++++.|..-..+.++
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 356778777654 56555543 3589999998665443211 0112335666665 46799999988899887
Q ss_pred EEeccCC----------eEEEeeccCCCcceEEEEeecC-CeeeeecCCCcEEEEecC
Q 000944 1010 KYRRDEN----------QLYIFADDSVPRWLTAAHHIDF-DTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1010 ~~~~~~~----------~l~~~a~D~~~~~~~~~~~ld~-~~~l~~D~~gnl~il~~~ 1056 (1213)
.++.... .... .-..+..+++++.+-.+ ..++.+..+|.+.+++..
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEV-TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EC---------------CEEE-EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred ECCCCCCcccccCCCCCcceE-EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 6643211 1110 11123345666666433 457778889999998754
No 100
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=95.88 E-value=2.4 Score=46.08 Aligned_cols=137 Identities=9% Similarity=0.056 Sum_probs=82.1
Q ss_pred ccEEEEEEEEeCCceEEEEEE-EeecCcceEecccc---C-eEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE
Q 000944 919 AGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQFQ---G-RLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~~---g-~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~ 992 (1213)
-|.+.+|++..+ +.+.+.. ....++|.+++-.. | .|+++. ..+|++|++..........+..+...+.++..
T Consensus 76 D~~v~iWd~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~ 153 (297)
T 2pm7_B 76 DGKVMIWKEENG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (297)
T ss_dssp TTEEEEEEBSSS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred CCEEEEEEcCCC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence 377899998754 2211211 23467888886542 4 444443 35899999975421111112222334555554
Q ss_pred e---------------CCEEEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEeecC----CeeeeecCCCcEEE
Q 000944 993 Y---------------RDRIYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHHIDF----DTMAGADKFGNIYF 1052 (1213)
Q Consensus 993 ~---------------~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ld~----~~~l~~D~~gnl~i 1052 (1213)
. +++++.|..-..+.++.++.......... -..+..++.++.+-.. ..++.+..+|.+.+
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence 3 35899999889999988876443332221 1234567888776433 35677889999999
Q ss_pred EecCC
Q 000944 1053 VRLPQ 1057 (1213)
Q Consensus 1053 l~~~~ 1057 (1213)
++...
T Consensus 234 Wd~~~ 238 (297)
T 2pm7_B 234 WTQDN 238 (297)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 98754
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.85 E-value=2.1 Score=48.33 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=100.3
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+++++|..+++.+..++. ...|.++. |. ....+++.|+. +.+.++....+ ..+......
T Consensus 158 ~i~iwd~~~~~~~~~~~~--~~~V~~v~---fs--pdg~~l~s~s~-------------~~~~~~~~~~~-~~~~~~~~~ 216 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIET--RGEVKDLH---FS--TDGKVVAYITG-------------SSLEVISTVTG-SCIARKTDF 216 (365)
T ss_dssp EEEEEETTTTEEEEEEEC--SSCCCEEE---EC--TTSSEEEEECS-------------SCEEEEETTTC-CEEEEECCC
T ss_pred EEEEeECCCCcEEEEeCC--CCceEEEE---Ec--cCCceEEeccc-------------eeEEEEEeccC-cceeeeecC
Confidence 799999999988776653 23455543 43 23467777753 12444443332 222222222
Q ss_pred eecCcceEeccc-cCe-EEEEeC-C----eEEEEecCCce--eeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEE
Q 000944 941 QVEGIPLALCQF-QGR-LLAGIG-P----VLRLYDLGKKR--LLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFC 1009 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~-ll~~~g-~----~l~i~~~~~~~--l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l 1009 (1213)
...+.|.+++-. +|. ++++.. + .+..|+..... ..+...+......|+++.. .+++|+.|..-.+|.++
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 334566666543 344 444432 2 34445443322 2222222222335666654 57899999998998885
Q ss_pred EEeccCCeEEEeeccCCCcceEEEEeecCC-eeeeecCCCcEEEEecCCC
Q 000944 1010 KYRRDENQLYIFADDSVPRWLTAAHHIDFD-TMAGADKFGNIYFVRLPQD 1058 (1213)
Q Consensus 1010 ~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D~~gnl~il~~~~~ 1058 (1213)
+....+....-...+...++++.|-.++ .++.+-.++.|.+++.++.
T Consensus 297 --d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 297 --KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp --ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred --ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4444554433334566779998886444 5677889999999999764
No 102
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.80 E-value=2.9 Score=45.63 Aligned_cols=221 Identities=14% Similarity=0.165 Sum_probs=109.7
Q ss_pred cEEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCC
Q 000944 541 TIVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDP 618 (1213)
Q Consensus 541 ~I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p 618 (1213)
.|...+.. +.+++.+..++.+.++.+.....+..+. .-...|.|+++.+ ...+++.|..|+.+.+|+++.
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~s~~~d~~i~iwd~~~ 138 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNP------QSNLIVSGSFDESVRIWDVKT 138 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECS------SSSEEEEEETTSCEEEEETTT
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEECCC
Confidence 46666554 3566666667888888765322222221 1245688888865 356889999999999999853
Q ss_pred CCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceee-ecCCCCeEE
Q 000944 619 DDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRF-LGLRPPKLF 697 (1213)
Q Consensus 619 ~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~-lG~~pv~l~ 697 (1213)
...+..+ ......+.-+.+. ....+|+.|..||.+..|.+.. ++.. .... -...++...
T Consensus 139 ~~~~~~~-----~~~~~~v~~~~~~-----------~~~~~l~~~~~d~~i~~wd~~~--~~~~--~~~~~~~~~~~~~~ 198 (312)
T 4ery_A 139 GKCLKTL-----PAHSDPVSAVHFN-----------RDGSLIVSSSYDGLCRIWDTAS--GQCL--KTLIDDDNPPVSFV 198 (312)
T ss_dssp CCEEEEE-----CCCSSCEEEEEEC-----------TTSSEEEEEETTSCEEEEETTT--CCEE--EEECCSSCCCEEEE
T ss_pred CEEEEEe-----cCCCCcEEEEEEc-----------CCCCEEEEEeCCCcEEEEECCC--Ccee--eEEeccCCCceEEE
Confidence 3222221 1111122222332 1345788999999998887642 2110 0110 111233322
Q ss_pred EEEECCeeEEEEec-CccEEEEEeC-CeEEEEecCc--cccce-eeccccCCCCceEEEE-e-CCeEEEEEEccCCCeeE
Q 000944 698 SVVVGGRAAMLCLS-SRPWLGYIHR-GRFLLTPLSY--ETLEY-AASFSSDQCVEGVVSV-A-GNALRVFTIERLGETFN 770 (1213)
Q Consensus 698 ~~~~~~~~~v~~~g-~~p~~i~~~~-~~~~~~~~~~--~~v~~-~~~f~~~~~~~~~i~~-~-~~~L~i~~l~~~~~~~~ 770 (1213)
.+.-++ ..+++.+ +....++..+ ++.. ..+.. ..... ...+... ...++.. + ++.+++-.+... -.
T Consensus 199 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~---~~ 271 (312)
T 4ery_A 199 KFSPNG-KYILAATLDNTLKLWDYSKGKCL-KTYTGHKNEKYCIFANFSVT--GGKWIVSGSEDNLVYIWNLQTK---EI 271 (312)
T ss_dssp EECTTS-SEEEEEETTTEEEEEETTTTEEE-EEECSSCCSSSCCCEEEECS--SSCEEEECCTTSCEEEEETTTC---CE
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCcEE-EEEEecCCceEEEEEEEEeC--CCcEEEEECCCCEEEEEECCCc---hh
Confidence 222122 2333333 4444455432 2211 11110 01111 1111111 1223333 2 467887776652 23
Q ss_pred EEEEeC-CCccceeeecCCCceEEEEE
Q 000944 771 ETALPL-RYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 771 ~r~i~l-~~tp~~i~y~~~~~~~~v~~ 796 (1213)
++++.- ...+..++++|..+.++.++
T Consensus 272 ~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 272 VQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred hhhhhccCCcEEEEeecCcCCceEEEE
Confidence 455542 34677889999888877665
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.77 E-value=2 Score=48.61 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=58.7
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE----EEeecCcceEe-ccccC-eEEEEeCCeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH----KTQVEGIPLAL-CQFQG-RLLAGIGPVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~----~~~~~g~V~ai-~~~~g-~ll~~~g~~l~i~~~~~ 971 (1213)
..++++|+. .|.|.+|++..... ..... .....+..... +...+ .++++.++.|++|++..
T Consensus 257 ~~~l~~~~~------------dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 257 GLHLLTVGT------------DNRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp SSEEEEEET------------TSCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred CCEEEEecC------------CCeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 467777763 36788999876421 11110 01111111221 22233 44557788999999987
Q ss_pred ceeeceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEec
Q 000944 972 KRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
.+....- ......+.++.. .+++++.|..-..+.++....
T Consensus 324 ~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 324 GEQITML--KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CCEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred Ccceeee--ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 6654432 222345666655 468899999988999977654
No 104
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.77 E-value=3.4 Score=46.31 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=81.2
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc---cCeEEE-Ee-CCeEEEEecCCceeeceeeecCccceEEEEEE-
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF---QGRLLA-GI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT- 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~---~g~ll~-~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~- 992 (1213)
-|.+.+|++... ..++.+ ....++|.+++-. +|.+++ +. ..+|++|++...+.... +..+...+.++..
T Consensus 175 D~~v~lwd~~~~-~~~~~~--~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 175 DGTCALWDVESG-QLLQSF--HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA--FETHESDVNSVRYY 249 (354)
T ss_dssp TSEEEEEETTTC-CEEEEE--ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEC
T ss_pred CCcEEEEeCCCC-eEEEEE--cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEe
Confidence 377888987654 122222 1345778776532 344444 33 36899999987665433 2223446667665
Q ss_pred -eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecCCCcEEEEecCC
Q 000944 993 -YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 993 -~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.+++++.|..-..+.++..+. ...+...........++++.+- +...++++..+|.+.+++...
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence 478999998888888865432 2233344443334456666664 444677888999999998643
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.63 E-value=1.1 Score=50.68 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=61.4
Q ss_pred CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCC--------------ceEEEEEEEeecCcc
Q 000944 881 NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG--------------KSLELLHKTQVEGIP 946 (1213)
Q Consensus 881 ~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~--------------~kl~~~~~~~~~g~V 946 (1213)
...+.++.. . ....+++.|+. .|.|.+|++...+ ..-+.+......++|
T Consensus 146 ~~~v~~~~~---~--~~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (377)
T 3dwl_C 146 RSTILSLDW---H--PNNVLLAAGCA------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208 (377)
T ss_dssp CSCEEEEEE---C--TTSSEEEEEES------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred CCCeEEEEE---c--CCCCEEEEEeC------------CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence 345555543 2 23467887764 3778999985321 012233333667889
Q ss_pred eEeccc-cC-eEEEEeC-CeEEEEecCCcee----eceeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEe
Q 000944 947 LALCQF-QG-RLLAGIG-PVLRLYDLGKKRL----LRKCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYR 1012 (1213)
Q Consensus 947 ~ai~~~-~g-~ll~~~g-~~l~i~~~~~~~l----~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~ 1012 (1213)
++++-- +| +|+++.. ..|++|++...+. ...... ....+.++.. .+.+++.| ...++.++...
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~ 280 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAG-YNYSPILLQGN 280 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEE-SSSSEEEECCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEE-cCCcEEEEEeC
Confidence 888654 34 4555443 5899999986554 222222 2334566554 45566666 45666665544
No 106
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.61 E-value=3.7 Score=45.57 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=80.9
Q ss_pred EEEEEeCC-CCc--eEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 861 CIRVLDPR-SAN--TTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 861 ~i~l~d~~-~~~--~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
.+.+++.. +++ .+..+....+..+.++ .+.. ++ +++++... ..|++.+|++.....+++.+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~---~~sp-dg-~~l~v~~~-----------~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHL---VFSP-DG-QYAFLAGE-----------LSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEE---EECT-TS-SEEEEEET-----------TTTEEEEEEEETTTTEEEEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceE---EECC-CC-CEEEEEeC-----------CCCEEEEEEecCCCCceEEe
Confidence 45555544 332 2344455566555543 3332 22 44444322 14788999988632356555
Q ss_pred EEEee-c------CcceEeccc-cC-eEEEEe--CCeEEEEecCCc-eeeceeeecCccc--eEEEEEEeCCEEEEeecC
Q 000944 938 HKTQV-E------GIPLALCQF-QG-RLLAGI--GPVLRLYDLGKK-RLLRKCENKLFPN--TIVSINTYRDRIYVGDIQ 1003 (1213)
Q Consensus 938 ~~~~~-~------g~V~ai~~~-~g-~ll~~~--g~~l~i~~~~~~-~l~~~~~~~~~~~--~i~~l~~~~~~I~vgD~~ 1003 (1213)
..... . ..+.+++-- +| +|+++. .+.|.+|+++.. ++........... ....++..+++|++++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 43322 1 224444332 34 464543 368999999732 3433333321111 233444567899999876
Q ss_pred -CcEEEEEEeccCCeEEEeecc
Q 000944 1004 -ESFHFCKYRRDENQLYIFADD 1024 (1213)
Q Consensus 1004 -~Sv~~l~~~~~~~~l~~~a~D 1024 (1213)
..+.+++++.+..++..+...
T Consensus 307 ~~~v~v~~~d~~tg~l~~~~~~ 328 (347)
T 3hfq_A 307 TDNATLYARDLTSGKLSLLQKD 328 (347)
T ss_dssp TTEEEEEEECTTTCCEEEEEEE
T ss_pred CCcEEEEEEeCCCCeEEecccc
Confidence 678888888777888877653
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.68 Score=58.41 Aligned_cols=144 Identities=12% Similarity=0.103 Sum_probs=93.4
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEeccc-c--CeE-EEEeC-CeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQF-Q--GRL-LAGIG-PVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~-~--g~l-l~~~g-~~l~i~~~~~ 971 (1213)
.++++.|+. .|.|.+|++..+ ..+.+.. ....++|++++-. . +.+ +.+.. ..|++|++..
T Consensus 21 g~~latg~~------------dg~I~vwd~~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 21 GKRLATCSS------------DKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp SCCEEEEET------------TTEEEEEEEETT--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred CCeEEEEEC------------CCcEEEEecCCC--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 357777753 489999999854 3333332 2457899999864 2 444 44433 5799999987
Q ss_pred ceeeceeeecCccceEEEEEEe----CCEEEEeecCCcEEEEEEeccCC-eEEEeeccCCCcceEEEEeec---------
Q 000944 972 KRLLRKCENKLFPNTIVSINTY----RDRIYVGDIQESFHFCKYRRDEN-QLYIFADDSVPRWLTAAHHID--------- 1037 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~----~~~I~vgD~~~Sv~~l~~~~~~~-~l~~~a~D~~~~~~~~~~~ld--------- 1037 (1213)
.+.............+.++... ++++++|..-..+.++..+.... ....+ ..++..++++.+-.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC-------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe--ecCCCceEEEEecCccccccccc
Confidence 7644443343345567777654 67999999999999977654421 11222 23445566666543
Q ss_pred -----CCeeeeecCCCcEEEEecCC
Q 000944 1038 -----FDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1038 -----~~~~l~~D~~gnl~il~~~~ 1057 (1213)
...++.+..+|.|.+++...
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEET
T ss_pred ccCCCCCEEEEEECCCeEEEEeccC
Confidence 45678889999999998754
No 108
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.57 E-value=3.8 Score=45.49 Aligned_cols=113 Identities=9% Similarity=0.093 Sum_probs=65.9
Q ss_pred cEEEEEe--------cCCEEEEEEeCCEEEEEEEccCCC---e-EEeeeec-cCcceEEEEeeecCCCceeeeEEEEEEe
Q 000944 541 TIVKVGS--------NRLQVVIALSGGELIYFEVDMTGQ---L-LEVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSY 607 (1213)
Q Consensus 541 ~I~~as~--------~~~~v~v~~s~~~l~~l~~~~~~~---l-~~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~ 607 (1213)
.|.+.+. .+++++-+..++.+.++.+..... . .....+. -...|.++++.+ ...+++.|.+
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~------~~~~l~s~s~ 96 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ------ENCFAISSSW 96 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS------STTEEEEEET
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC------CCCEEEEEcC
Confidence 4666655 234555555678888888763211 1 1111111 135689998864 3568889999
Q ss_pred CCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 608 DNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 608 ~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
|+++++|++.....+..+. .....+.-+.+. ....+|+.|..||.+..|.+.
T Consensus 97 D~~v~lwd~~~~~~~~~~~-----~h~~~v~~v~~s-----------p~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFV-----GHQSEVYSVAFS-----------PDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp TSEEEEEETTSSCEEEEEE-----CCCSCEEEEEEC-----------SSTTEEEEEETTSCEEEEESS
T ss_pred CCcEEEEECCCCcEEEEEc-----CCCCcEEEEEEC-----------CCCCEEEEEcCCCEEEEEecc
Confidence 9999999995433332221 111222222332 134578899999999888764
No 109
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.53 E-value=1.4 Score=50.80 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=26.7
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCC
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDP 618 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p 618 (1213)
...|+|+++.+ ...++++|..||.|.||+++.
T Consensus 28 ~~~V~~v~~s~------~g~~la~g~~dg~v~iw~~~~ 59 (447)
T 3dw8_B 28 ADIISTVEFNH------SGELLATGDKGGRVVIFQQEQ 59 (447)
T ss_dssp GGSEEEEEECS------SSSEEEEEETTSEEEEEEECC
T ss_pred cCcEEEEEECC------CCCEEEEEcCCCeEEEEEecC
Confidence 46799999965 367899999999999999953
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.53 E-value=3.5 Score=44.72 Aligned_cols=61 Identities=11% Similarity=0.303 Sum_probs=40.2
Q ss_pred CEEEEEEeCCEEEEEEEccCCCeEEeeee-ccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCC
Q 000944 550 LQVVIALSGGELIYFEVDMTGQLLEVEKH-EMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDP 618 (1213)
Q Consensus 550 ~~v~v~~s~~~l~~l~~~~~~~l~~~~~~-~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p 618 (1213)
+.++++ .|++|.+..+. +|+....-+. .-...|+|+++.+ ...++++|..|++|.+|+++.
T Consensus 37 ~~lAvg-~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~------~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECT------TSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECC------CCCEEEEEECCCcEEEeecCC
Confidence 344445 37788777654 3544332121 2234689999965 357899999999999999853
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.39 E-value=1.9 Score=49.22 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=100.0
Q ss_pred EEEEEeCCCCceEEEEE-cCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLE-LQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~-~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
.++++|..+++.+..+. -.....+.++.. . ....++++|+. .|.|.+|++... +......
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---~--~~~~~l~~~~~------------d~~i~iwd~~~~--~~~~~~~ 215 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDW---S--RDGALICTSCR------------DKRVRVIEPRKG--TVVAEKD 215 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEE---C--TTSSCEEEEET------------TSEEEEEETTTT--EEEEEEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEE---C--CCCCEEEEEec------------CCcEEEEeCCCC--ceeeeec
Confidence 57888888887776664 233455666543 2 23457777763 478999998654 3322222
Q ss_pred EeecCc-ceEeccc-cCeEEEEe-----CCeEEEEecCCcee-eceeeecCccceEEEEE--EeCCEEE-EeecCCcEEE
Q 000944 940 TQVEGI-PLALCQF-QGRLLAGI-----GPVLRLYDLGKKRL-LRKCENKLFPNTIVSIN--TYRDRIY-VGDIQESFHF 1008 (1213)
Q Consensus 940 ~~~~g~-V~ai~~~-~g~ll~~~-----g~~l~i~~~~~~~l-~~~~~~~~~~~~i~~l~--~~~~~I~-vgD~~~Sv~~ 1008 (1213)
....+. +.+++-. +|+++++. ...|++|++...+. ....... ....+.++. ..+++++ +|..-..+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-TSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-CCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-CCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 233444 5555443 46665543 45899999986432 2222222 123345554 4567776 5656678888
Q ss_pred EEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1009 CKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1009 l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
+.+......+..+..-.....+.++.+..++.++++ .++.+.+++...
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred EEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCC
Confidence 888754433544443334455667777655555544 344777777654
No 112
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.33 E-value=0.46 Score=53.76 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=44.5
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEE
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~L 660 (1213)
...|.|+++.+ ...++++|..|+.|.+|+++.. ..+.+. .+......+.-+.+. ....+|
T Consensus 11 ~~~v~~~~~s~------~g~~l~~~~~d~~i~iw~~~~~-~~~~~~--~~~~h~~~v~~~~~s-----------~~~~~l 70 (377)
T 3dwl_C 11 PKPSYEHAFNS------QRTEFVTTTATNQVELYEQDGN-GWKHAR--TFSDHDKIVTCVDWA-----------PKSNRI 70 (377)
T ss_dssp SSCCSCCEECS------SSSEEECCCSSSCBCEEEEETT-EEEECC--CBCCCSSCEEEEEEC-----------TTTCCE
T ss_pred CCcEEEEEECC------CCCEEEEecCCCEEEEEEccCC-ceEEEE--EEecCCceEEEEEEe-----------CCCCEE
Confidence 45688888865 3568889989999999999532 111111 122222222222332 134578
Q ss_pred EEEeeCCeEEEEEEeC
Q 000944 661 NAGLQNGVLFRTVVDM 676 (1213)
Q Consensus 661 ligl~~G~l~~~~~~~ 676 (1213)
+.|..||.+..|.+..
T Consensus 71 ~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEEETTSSEEEC----
T ss_pred EEEeCCCeEEEEEcCC
Confidence 8999999998888754
No 113
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.27 E-value=6.2 Score=48.86 Aligned_cols=267 Identities=10% Similarity=0.042 Sum_probs=122.0
Q ss_pred ceEEEEEeCCCCEEEEEEEeCCceeeeeEEEEeCCCCcceeEEEEcC-CeEEEEeeeCCeEEEEEeecCCCCCcccccCC
Q 000944 294 LFFFLLQTEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKS-GYLFAASEFGNHALYQFQAIGADPDVEASSST 372 (1213)
Q Consensus 294 ~~~~ll~~~~G~l~~l~l~~~~~~v~~l~i~~l~~~~~~s~l~~l~~-~~lFvgS~~gds~l~~~~~~~~~~~~~~~~~~ 372 (1213)
.+.++-+..||.+.+-.+..+........-..-+....-.++..-.+ .+|+.||.- +.+.-|.-..
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D--g~v~vwd~~~----------- 461 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD--GELRLWDLAA----------- 461 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT--SEEEEEETTT-----------
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC--CcEEEEECCC-----------
Confidence 35677788888887777654432111111111233333355555544 456666544 3443332210
Q ss_pred ccccccCCCceeeccCCcccEEEEEEe-ccCCcccceEEeccCCCCCCcEEEEEecCCCCeEEEEccCCcceEEEEecCC
Q 000944 373 LMETEEGFQPVFFQPRGLKNLVRIEQV-ESLMPIMDMRIANLFEEEAPQIFTLCGRGPRSSLRILRPGLAVSEMAVSQLP 451 (1213)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-~n~gPI~D~~~~~~~~~~~~~lv~~sG~g~~GsL~~lr~gi~~~~~~~~~l~ 451 (1213)
-..+.++ ..-++|.++++.. +...|++++ .+|++++....-...........
T Consensus 462 --------------------~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 462 --------------------GVSTRRFVGHTKDVLSVAFSL----DNRQIVSAS---RDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp --------------------TEEEEEEECCSSCEEEEEECT----TSSCEEEEE---TTSCEEEECTTSCEEEEECSSTT
T ss_pred --------------------CcceeEEeCCCCCEEEEEEeC----CCCEEEEEe---CCCEEEEEECCCCcceeeccCCC
Confidence 0122233 3456788877753 123454443 46788887642111111111112
Q ss_pred CCcceEEEeeeCCCCCCceEEEEEecCce-eEEEec-cc-eeeec-------CCCccCCCCeEEEEeecCCeEEEEeCCc
Q 000944 452 GVPSAVWTVKKNVNDEFDAYIVVSFNNAT-LVLSIG-ET-VEEVS-------DSGFLDTTPSLAVSLIGDDSLMQVHPSG 521 (1213)
Q Consensus 452 ~~~~~iw~l~~~~~~~~~~~lvlS~~~~T-~vl~~~-~~-~~e~~-------~~gf~~~~~Tl~a~~~~~~~ivQVT~~~ 521 (1213)
+....++++...... ...+++....+.+ +++.+. .. ...+. ...|..+...|++|.. + ..
T Consensus 515 ~h~~~v~~~~~~~~~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-D--------g~ 584 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNT-LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-D--------GV 584 (694)
T ss_dssp SCSSCEEEEEECSCS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-T--------SB
T ss_pred CCCCcEEEEEEeCCC-CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-C--------Ce
Confidence 211346666654321 1235554444443 344442 11 11111 1122233334443332 2 23
Q ss_pred EEEEeCCCceeeeeCCCCccEEEEEec-CCEEEEEEeCCEEEEEEEccCCCeEEeeeecc----------------C--c
Q 000944 522 IRHIREDGRINEWRTPGKRTIVKVGSN-RLQVVIALSGGELIYFEVDMTGQLLEVEKHEM----------------S--G 582 (1213)
Q Consensus 522 i~l~~~~~~~~~~~~~~~~~I~~as~~-~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l----------------~--~ 582 (1213)
|++.+............+..|...+.. +.+++.+..++.+.++.+.. +.+...-+... . .
T Consensus 585 i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 585 VLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp CEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCC
T ss_pred EEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeE
Confidence 555554321111112233457666665 34455555677787776542 22211100000 0 1
Q ss_pred ceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeC
Q 000944 583 DVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLD 617 (1213)
Q Consensus 583 ~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~ 617 (1213)
.++++++.+ ...+|+.|..||.|+||++.
T Consensus 664 ~~~~l~~sp------dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 664 YCTSLNWSA------DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CEEEEEECT------TSSEEEEEETTSEEEEEEC-
T ss_pred EeeeEEEcC------CCCEEEEEcCCCeEEEEecc
Confidence 145666643 35789999999999999973
No 114
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.12 E-value=2.4 Score=46.44 Aligned_cols=155 Identities=9% Similarity=0.070 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE-eecCcceEecccc---CeEE
Q 000944 882 EAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT-QVEGIPLALCQFQ---GRLL 957 (1213)
Q Consensus 882 E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~-~~~g~V~ai~~~~---g~ll 957 (1213)
+.|.|+.. . ...++++.|+. .|.|.+|++.......+.+... ...++|++++-.. +.++
T Consensus 12 ~~v~~~~~---~--~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 12 DLVHDVVY---D--FYGRHVATCSS------------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp SCEEEEEE---C--SSSSEEEEEET------------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred cceeEEEE---c--CCCCEEEEeeC------------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 45555543 2 23468887763 4889999998754344444433 4688999987653 5554
Q ss_pred EEeC--CeEEEEecCCcee-------eceeeecCccceEEEEEEe----CCEEEEeecCCcEEEEEEeccC--CeEEE--
Q 000944 958 AGIG--PVLRLYDLGKKRL-------LRKCENKLFPNTIVSINTY----RDRIYVGDIQESFHFCKYRRDE--NQLYI-- 1020 (1213)
Q Consensus 958 ~~~g--~~l~i~~~~~~~l-------~~~~~~~~~~~~i~~l~~~----~~~I~vgD~~~Sv~~l~~~~~~--~~l~~-- 1020 (1213)
++.+ ..|++|++...+. .....+......+.++... ++++++|..-..+.++..+... ..+..
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 4333 5799999975421 2222333234567777664 6799999988888887664332 11111
Q ss_pred ----e--eccCCCcceEEEEeec----CCeeeeecCCCcEEEE
Q 000944 1021 ----F--ADDSVPRWLTAAHHID----FDTMAGADKFGNIYFV 1053 (1213)
Q Consensus 1021 ----~--a~D~~~~~~~~~~~ld----~~~~l~~D~~gnl~il 1053 (1213)
+ ..+.....++++.+-. ...++++..++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 197 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQ 197 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEE
Confidence 0 1112333445555432 3456777777777443
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.10 E-value=5.7 Score=44.70 Aligned_cols=211 Identities=9% Similarity=0.119 Sum_probs=123.2
Q ss_pred CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccC
Q 000944 754 GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMEN 833 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1213)
++.+++..+.. .-..+.++.+..|+.++++|..+.++++...
T Consensus 53 d~~i~v~d~~~---~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~----------------------------------- 94 (391)
T 1l0q_A 53 SNDVSIIDTAT---NNVIATVPAGSSPQGVAVSPDGKQVYVTNMA----------------------------------- 94 (391)
T ss_dssp GTEEEEEETTT---TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----------------------------------
T ss_pred CCeEEEEECCC---CeEEEEEECCCCccceEECCCCCEEEEEECC-----------------------------------
Confidence 46777766654 2356788888899999999988876666421
Q ss_pred CCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCC
Q 000944 834 GDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWP 913 (1213)
Q Consensus 834 ~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~ 913 (1213)
...++++|..+++.+..+... ..+.++. +.. +++.+++.+..
T Consensus 95 -------------------------~~~v~v~d~~~~~~~~~~~~~--~~~~~~~---~s~-dg~~l~~~~~~------- 136 (391)
T 1l0q_A 95 -------------------------SSTLSVIDTTSNTVAGTVKTG--KSPLGLA---LSP-DGKKLYVTNNG------- 136 (391)
T ss_dssp -------------------------TTEEEEEETTTTEEEEEEECS--SSEEEEE---ECT-TSSEEEEEETT-------
T ss_pred -------------------------CCEEEEEECCCCeEEEEEeCC--CCcceEE---ECC-CCCEEEEEeCC-------
Confidence 026888999888877666543 3444443 332 22233344321
Q ss_pred CCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc--cCeEEEEeC--CeEEEEecCCceeeceeeecCccceEEE
Q 000944 914 KRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF--QGRLLAGIG--PVLRLYDLGKKRLLRKCENKLFPNTIVS 989 (1213)
Q Consensus 914 e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~--~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~~~~~~i~~ 989 (1213)
.|.|++|++... +.. ........+.+++-- +.+|+++.+ +.|++|++...+....... ...+.+
T Consensus 137 -----~~~v~~~d~~~~--~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~ 204 (391)
T 1l0q_A 137 -----DKTVSVINTVTK--AVI--NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSG 204 (391)
T ss_dssp -----TTEEEEEETTTT--EEE--EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEE
T ss_pred -----CCEEEEEECCCC--cEE--EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccc
Confidence 468889887643 332 222334556665543 345645443 5799999987665443322 234455
Q ss_pred EEE--eCCEEEEeec---CCcEEEEEEeccCCeE-EEeeccCCCcceEEEEeecCC-ee-eeecCCCcEEEEecCC
Q 000944 990 INT--YRDRIYVGDI---QESFHFCKYRRDENQL-YIFADDSVPRWLTAAHHIDFD-TM-AGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 990 l~~--~~~~I~vgD~---~~Sv~~l~~~~~~~~l-~~~a~D~~~~~~~~~~~ld~~-~~-l~~D~~gnl~il~~~~ 1057 (1213)
+.. .++++++++. ...+.+ |+....+. ..+... ..+.++.+-.++ .+ +.+..++.+.+++...
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~--~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSM--IDTGTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEE--EETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEECCCCCEEEEEecCcCCCcEEE--EECCCCeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 544 4678998884 445555 55443333 333322 234555554333 45 4557789999988754
No 116
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.82 E-value=4.1 Score=45.30 Aligned_cols=172 Identities=9% Similarity=0.032 Sum_probs=95.0
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
+++++|..+++.+..+.-.. ..+.++. +. ....+++.|.. .|.|.+|++... .........
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~-~~v~~v~---~s--p~~~~l~s~~~------------d~~i~~wd~~~~-~~~~~~~~~ 159 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQ-SEVYSVA---FS--PDNRQILSAGA------------EREIKLWNILGE-CKFSSAEKE 159 (343)
T ss_dssp EEEEEETTSSCEEEEEECCC-SCEEEEE---EC--SSTTEEEEEET------------TSCEEEEESSSC-EEEECCTTT
T ss_pred cEEEEECCCCcEEEEEcCCC-CcEEEEE---EC--CCCCEEEEEcC------------CCEEEEEeccCC-ceeeeeccc
Confidence 78999988888776654322 3455543 33 22356776653 367888887531 111111001
Q ss_pred eecCcceEeccc------------cCeEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecCCc
Q 000944 941 QVEGIPLALCQF------------QGRLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQES 1005 (1213)
Q Consensus 941 ~~~g~V~ai~~~------------~g~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~~S 1005 (1213)
...+.|.+++-- ..+++.+. ...|++|+... +.... +..+...+.++.. .+++|+.|..-..
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~--~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYT--FKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEE--EECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEE--EcCccccceEEEECCCCCEEEEEcCCCe
Confidence 234555555432 23454433 46899999543 22221 2223445666654 5779999998888
Q ss_pred EEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1006 FHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1006 v~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
+.++...........+.. ...+.++.+-.+..++++-.++.+.+++...
T Consensus 237 v~iwd~~~~~~~~~~~~~---~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp EEEEESSCCSSCSEEEEC---SSCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred EEEEECCCCcccceeecC---CCcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 888665322222222211 2236666665445566555677899988754
No 117
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.30 E-value=2.8 Score=46.07 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=95.3
Q ss_pred EEEEEeCCCCceEEEEEcCCC-ceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDN-EAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~-E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
+++++|..+.+......|..+ ..|.++. +.......+++.|.. -|.+.+|++... +.+.+..
T Consensus 36 ~v~lwd~~~~~~~~~~~l~gH~~~V~~v~---~~~~~~~~~l~s~s~------------D~~v~iWd~~~~--~~~~~~~ 98 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLRGHEGPVWQVA---WAHPMYGNILASCSY------------DRKVIIWREENG--TWEKSHE 98 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEE---ECCGGGSSCEEEEET------------TSCEEEECCSSS--CCCEEEE
T ss_pred eEEEEEecCCCcEEEEEEcCCCccEEEEE---eCCCCCCCEEEEEEC------------CCEEEEEECCCC--cceEEEE
Confidence 678887665543222333322 3455543 321011356666653 366888987654 2222222
Q ss_pred -EeecCcceEecccc---CeEEEEeC--CeEEEEecCCc-eeeceeeecCccceEEEEEEe-------------------
Q 000944 940 -TQVEGIPLALCQFQ---GRLLAGIG--PVLRLYDLGKK-RLLRKCENKLFPNTIVSINTY------------------- 993 (1213)
Q Consensus 940 -~~~~g~V~ai~~~~---g~ll~~~g--~~l~i~~~~~~-~l~~~~~~~~~~~~i~~l~~~------------------- 993 (1213)
....++|.+++--. |.++++.+ ..|++|++... ++............+.++...
T Consensus 99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178 (316)
T ss_dssp ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence 23578898887542 44444433 57999998754 221111111111222222221
Q ss_pred CCEEEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEeecC-----CeeeeecCCCcEEEEecCC
Q 000944 994 RDRIYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHHIDF-----DTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 994 ~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ld~-----~~~l~~D~~gnl~il~~~~ 1057 (1213)
+.+++.|..-..+.++..+.. .....+. -..+..++.++.+-.. ..++.+..+|.|.+++...
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 357888887788888776432 2221111 1234567787776432 4577889999999998754
No 118
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=94.16 E-value=4.3 Score=43.53 Aligned_cols=176 Identities=11% Similarity=0.141 Sum_probs=96.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+.++|+ +++.+..+.......+.++.. .. + ..+++..+. .++|++|+. ++..+......
T Consensus 101 ~i~~~d~-~g~~~~~~~~~~~~~~~~i~~---~~-~-g~l~v~~~~------------~~~i~~~~~--~g~~~~~~~~~ 160 (286)
T 1q7f_A 101 QIQIYNQ-YGQFVRKFGATILQHPRGVTV---DN-K-GRIIVVECK------------VMRVIIFDQ--NGNVLHKFGCS 160 (286)
T ss_dssp EEEEECT-TSCEEEEECTTTCSCEEEEEE---CT-T-SCEEEEETT------------TTEEEEECT--TSCEEEEEECT
T ss_pred EEEEECC-CCcEEEEecCccCCCceEEEE---eC-C-CCEEEEECC------------CCEEEEEcC--CCCEEEEeCCC
Confidence 6778884 466666555444455655543 22 2 234443221 367777763 33333332211
Q ss_pred eecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-CCEEEEeecCCcEEEEEEeccCC
Q 000944 941 QVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-RDRIYVGDIQESFHFCKYRRDEN 1016 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~~~I~vgD~~~Sv~~l~~~~~~~ 1016 (1213)
.....+.+|+.- +|+++++- ++.|++|+.+.+.+........+ ..+..|... ++.++|+|....-.+..|+.+..
T Consensus 161 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~-~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT-NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 239 (286)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTS-CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCcc-CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence 112345666654 57787765 56899999865433222111111 234566553 45788888765323444666666
Q ss_pred eEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1017 QLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1017 ~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.+..+........+.++.+-.++.++++|.++.|.+|++..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 66666544333344455444445777778888999998865
No 119
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.12 E-value=7.6 Score=42.58 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=85.3
Q ss_pred CCeEEEEEEccCCCeeEEEEEeCCC--ccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccc
Q 000944 754 GNALRVFTIERLGETFNETALPLRY--TPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQM 831 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l~~--tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1213)
++.+.+-.+.. .-..++++++. .|+.++++|+.+.+++....
T Consensus 20 ~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--------------------------------- 63 (349)
T 1jmx_B 20 PNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--------------------------------- 63 (349)
T ss_dssp TTEEEEEETTT---TEEEEEEECSSCCSSCEEEECTTSSEEEEEETT---------------------------------
T ss_pred CCeEEEEECCC---CcEEEEEecCCCCCCceeEECCCCCEEEEEeCC---------------------------------
Confidence 46776655543 34567888887 89999999988766665310
Q ss_pred cCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCC--ceEEEEEEEEeccCCCceEEEEEeeecC
Q 000944 832 ENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDN--EAAFSICTVNFHDKEHGTLLAVGTAKGL 909 (1213)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~--E~v~s~~~~~l~~~~~~~~i~VGT~~~~ 909 (1213)
...+.++|..+++.+..+.+... +.......+.+.. ...+++++.....
T Consensus 64 ---------------------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~ 114 (349)
T 1jmx_B 64 ---------------------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQ 114 (349)
T ss_dssp ---------------------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEE
T ss_pred ---------------------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEEccccc
Confidence 02578888888888777776431 1111111222332 2346666653211
Q ss_pred ccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEecc-ccCeEEEEeCCeEEEEecCCcee
Q 000944 910 QFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQ-FQGRLLAGIGPVLRLYDLGKKRL 974 (1213)
Q Consensus 910 ~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~-~~g~ll~~~g~~l~i~~~~~~~l 974 (1213)
...++.....++|++|++... ...+.+.....+..+.+++- -+|++++ .+..|++|+....+.
T Consensus 115 ~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 115 RLNDHYVVKPPRLEVFSTADG-LEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKY 178 (349)
T ss_dssp ECSSCEEECCCEEEEEEGGGG-GGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCE
T ss_pred ccccccccCCCeEEEEECCCc-cccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCce
Confidence 100111122478999987653 11222222333445665543 2567555 567799998875543
No 120
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.78 E-value=10 Score=42.12 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=74.4
Q ss_pred CCCccEEEEEec--CCEEEEEE-eCCEEEEEEEccCCCeEEeeeeccC----cceEEEEeeecCCCceeeeEEEEEEe--
Q 000944 537 PGKRTIVKVGSN--RLQVVIAL-SGGELIYFEVDMTGQLLEVEKHEMS----GDVACLDIASVPEGRKRSRFLAVGSY-- 607 (1213)
Q Consensus 537 ~~~~~I~~as~~--~~~v~v~~-s~~~l~~l~~~~~~~l~~~~~~~l~----~~is~i~i~~~~~~~~~~~~l~v~~~-- 607 (1213)
+.+....+.++. +.+++++. .++++.++.++ +|.+......... ..+.++++.+ ...+++++..
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~sp------dg~~l~v~~~~~ 280 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSP------DGKYLYASNRLK 280 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECT------TSSEEEEEECSS
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECC------CCCEEEEECCCC
Confidence 344445566655 34677665 36788888877 5655544332221 2356777754 2456766665
Q ss_pred CCcEEEEEeCCC-CceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEe-eCCeEEEEEEeCCCCccc
Q 000944 608 DNTIRILSLDPD-DCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGL-QNGVLFRTVVDMVTGQLS 682 (1213)
Q Consensus 608 ~~~i~i~sl~p~-~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl-~~G~l~~~~~~~~~~~l~ 682 (1213)
++.+.+|.+++. ..+..+........|+++.+. ....+|+++. .+|.+..|.++..+|++.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~s--------------pdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIIT--------------PNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEECSSCCCEEEEC--------------TTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecCCCCCceEEEC--------------CCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 489999999643 344444332223356765432 1234666766 678999999988777543
No 121
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.76 E-value=9.4 Score=41.63 Aligned_cols=172 Identities=9% Similarity=-0.011 Sum_probs=93.1
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+.++|..+++.+..+... .+.+ ++ .+.. + .++++++... .++|++|+.... ++......
T Consensus 21 ~v~~~d~~~~~~~~~~~~~-~~~~-~~---~~s~-d-g~~l~~~~~~-----------~~~i~~~d~~~~--~~~~~~~~ 80 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLG-YDFV-DT---AITS-D-CSNVVVTSDF-----------CQTLVQIETQLE--PPKVVAIQ 80 (331)
T ss_dssp EEEEEETTTCCEEEEEECC-CCEE-EE---EECS-S-SCEEEEEEST-----------TCEEEEEECSSS--SCEEEEEE
T ss_pred eEEEEeCcccceeeeEEcc-CCcc-eE---EEcC-C-CCEEEEEeCC-----------CCeEEEEECCCC--ceeEEecc
Confidence 7899999999888777754 3333 33 3332 2 2345544431 357888887654 33122222
Q ss_pred eecCcce--EeccccCeEEEEeCC----eEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeecC-Cc-EEEEE
Q 000944 941 QVEGIPL--ALCQFQGRLLAGIGP----VLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDIQ-ES-FHFCK 1010 (1213)
Q Consensus 941 ~~~g~V~--ai~~~~g~ll~~~g~----~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~~-~S-v~~l~ 1010 (1213)
...++.. ++.+-+.+|+++.+. .|.+|++...+.+...... ....++.. .++++++++.. .. +.++.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 3345555 233434566655555 8999999877665443222 22344444 56688888776 56 88877
Q ss_pred EeccCCeEEEeecc--CCCcceEEEEeecCC-eeeeec-CCCcEEEEecC
Q 000944 1011 YRRDENQLYIFADD--SVPRWLTAAHHIDFD-TMAGAD-KFGNIYFVRLP 1056 (1213)
Q Consensus 1011 ~~~~~~~l~~~a~D--~~~~~~~~~~~ld~~-~~l~~D-~~gnl~il~~~ 1056 (1213)
++.+. .+...... ........+.+-.++ .+++++ ..+.+.+++..
T Consensus 158 ~~~~g-~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 158 IDADG-VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp ECTTC-CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ECCCC-cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 76432 22211100 111223344443223 354444 56778888764
No 122
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.71 E-value=4.8 Score=43.63 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=87.2
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCce-EEEEEEEeecCcceEeccc---cCeEEEEe--CCeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKS-LELLHKTQVEGIPLALCQF---QGRLLAGI--GPVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~k-l~~~~~~~~~g~V~ai~~~---~g~ll~~~--g~~l~i~~~~~ 971 (1213)
.++++.|.. -|.|.+|++.....+ +..+ ....++|++++-- .|.++++. ..+|++|++..
T Consensus 21 g~~las~s~------------D~~v~iw~~~~~~~~~~~~l--~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 21 GKRMATCSS------------DKTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SSEEEEEET------------TSCEEEEEBCSSCBCCCEEE--CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCEEEEEeC------------CCEEEEEecCCCCcEEEEEE--ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 357777753 367889988643212 2222 2467899998742 25555543 36899999986
Q ss_pred ceeeceeeecCccceEEEEEEe----CCEEEEeecCCcEEEEEEeccCCe-EEEeeccCCCcceEEEEeec---------
Q 000944 972 KRLLRKCENKLFPNTIVSINTY----RDRIYVGDIQESFHFCKYRRDENQ-LYIFADDSVPRWLTAAHHID--------- 1037 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~----~~~I~vgD~~~Sv~~l~~~~~~~~-l~~~a~D~~~~~~~~~~~ld--------- 1037 (1213)
.+......+......+.++... ++++++|..-..+.++.++..... ... .+.+...+.++.+-.
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE--EECCSSCEEEEEECCCC-------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee--eecccCccceEeecCCcccccccC
Confidence 5443333333234456666653 578999998888888776543211 111 123344566655432
Q ss_pred -----CCeeeeecCCCcEEEEecCC
Q 000944 1038 -----FDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1038 -----~~~~l~~D~~gnl~il~~~~ 1057 (1213)
...++.+..+|.+.++++..
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEET
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcC
Confidence 23577788899999998754
No 123
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.71 E-value=3.4 Score=45.39 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=83.1
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-EeecCcceEeccc---cCeEEE-Ee-CCeEEEEecCC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK-TQVEGIPLALCQF---QGRLLA-GI-GPVLRLYDLGK 971 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~-~~~~g~V~ai~~~---~g~ll~-~~-g~~l~i~~~~~ 971 (1213)
.++++.|.. -|.+.+|++..+ +.+.+.. ....++|++++-. ++.+++ |. ..+|++|++..
T Consensus 25 g~~lasgs~------------D~~v~lwd~~~~--~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 25 GTRLATCSS------------DRSVKIFDVRNG--GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp GCEEEEEET------------TTEEEEEEEETT--EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred CCEEEEEeC------------CCeEEEEEecCC--CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 357777763 377899999764 3222222 3467899998743 354444 43 35899999986
Q ss_pred ceeeceeeecCccceEEEEEEe----CCEEEEeecCCcEEEEEEeccCCeEEEee-ccCCCcceEEEEeec---------
Q 000944 972 KRLLRKCENKLFPNTIVSINTY----RDRIYVGDIQESFHFCKYRRDENQLYIFA-DDSVPRWLTAAHHID--------- 1037 (1213)
Q Consensus 972 ~~l~~~~~~~~~~~~i~~l~~~----~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a-~D~~~~~~~~~~~ld--------- 1037 (1213)
.++.....+..+...+.++... +.+++.|..-..+.++.++... ...... ...+...+.++.+-.
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccCCccccc
Confidence 5433333333233456666553 4689999998999997775432 221111 112222333333211
Q ss_pred ---------CCeeeeecCCCcEEEEecC
Q 000944 1038 ---------FDTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1038 ---------~~~~l~~D~~gnl~il~~~ 1056 (1213)
...++.+..+|.+.+++..
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~ 197 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEE 197 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred cccccCccccceEEEecCCCeEEEEEeC
Confidence 1246677778888888764
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.41 E-value=8.9 Score=42.38 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=82.6
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC-CeEEEEecC------
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG-PVLRLYDLG------ 970 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g-~~l~i~~~~------ 970 (1213)
..+++.|.. -|.|.+|++..+. .+..+. .++|.++..... ++.+.. ..+.+|+.+
T Consensus 48 ~~~l~sg~~------------Dg~v~iwd~~~~~-~~~~~~----~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 48 KWVCMCRCE------------DGALHFTQLKDSK-TITTIT----TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp EEEEEEEEE------------TTEEEEEEESSSS-CEEEEE----EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred CCEEEEECC------------CCcEEEEECCCCc-EEEEEe----cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence 467777764 5789999997652 233322 466766655544 444333 467777665
Q ss_pred ---CceeeceeeecCccceEEEEEE----eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCe-ee
Q 000944 971 ---KKRLLRKCENKLFPNTIVSINT----YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDT-MA 1042 (1213)
Q Consensus 971 ---~~~l~~~~~~~~~~~~i~~l~~----~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~-~l 1042 (1213)
..++.+..... ....+.++.. .+++++.|..-..+.++... ..+...+........++++.+-.++. ++
T Consensus 110 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 110 DSKTNKVLREIEVD-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE--DDSQYIVHSAKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp ETTTCCEEEEEECC-CSSCEEEEECCC---CCEEEEEETTCCEEEEESS--SSCEEEEECCCSSCCCCEEEECTTSCEEE
T ss_pred ecCCcceeEEeecC-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC--CCcEEEEEecCCCCceEEEEECCCCCEEE
Confidence 33322222222 1234666653 56889999988898886554 34444433333444567777654444 55
Q ss_pred eecCCCcEEEEecCC
Q 000944 1043 GADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1043 ~~D~~gnl~il~~~~ 1057 (1213)
.+..+|.|.+++...
T Consensus 187 sg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 187 LYSPDGILDVYNLSS 201 (343)
T ss_dssp EECTTSCEEEEESSC
T ss_pred EEcCCCEEEEEECCC
Confidence 579999999998754
No 125
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.21 E-value=12 Score=41.19 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCEEEEEEe-CCEEEEEEEcc-CCCeEEeeeec-cC------cceEEEEeeecCCCceeeeEEEEEEe-CCcEEEEEeCC
Q 000944 549 RLQVVIALS-GGELIYFEVDM-TGQLLEVEKHE-MS------GDVACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDP 618 (1213)
Q Consensus 549 ~~~v~v~~s-~~~l~~l~~~~-~~~l~~~~~~~-l~------~~is~i~i~~~~~~~~~~~~l~v~~~-~~~i~i~sl~p 618 (1213)
+.+++++.. ++.+.++.++. .|++....... .. ..+.++++.+ ...+++++.. ++.+.+|.+++
T Consensus 198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp------dG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH------DGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT------TSCEEEEEEETTTEEEEEEECG
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC------CCCEEEEEeCCCCEEEEEEECC
Confidence 345555433 45777777775 35554432221 11 3467777764 2456655554 89999999964
Q ss_pred CCceeEeEEeec-CCCCceeEEEEeecccCCCCCCCCCCceEEEEEee-CCeEEEEEEeCCCCccc
Q 000944 619 DDCMQILSVQSV-SSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQ-NGVLFRTVVDMVTGQLS 682 (1213)
Q Consensus 619 ~~~l~~~~~~~l-~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~-~G~l~~~~~~~~~~~l~ 682 (1213)
+..+..+..... ...|.++.+. ....+|+++.. +|.+..|.++..+|++.
T Consensus 272 ~g~~~~~~~~~~~~~~~~~~~~s--------------pdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 272 DGHLTLIQQISTEGDFPRDFDLD--------------PTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGCEEEEEEEECSSSCCCEEEEC--------------TTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCcEEEeEEEecCCCCcCeEEEC--------------CCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 434444433222 2246665432 12335666654 58899999988777654
No 126
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.07 E-value=13 Score=41.03 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=75.8
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+.++|+.+++.+..+.... .+.++. +. ....++++....... .......++|++++.... ++.. ..
T Consensus 153 ~v~viD~~t~~~~~~i~~g~--~p~~i~---~~--~dG~l~v~~~~~~~~--~~~~~~~~~v~~id~~t~--~v~~--~~ 219 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIGI--QPTSLV---MD--KYNKMWTITDGGYEG--SPYGYEAPSLYRIDAETF--TVEK--QF 219 (328)
T ss_dssp EEEEEETTTTEEEEEEECSS--CBCCCE---EC--TTSEEEEEBCCBCTT--CSSCBCCCEEEEEETTTT--EEEE--EE
T ss_pred EEEEEECCCCeEEEEEEcCC--CccceE---Ec--CCCCEEEEECCCccC--CccccCCceEEEEECCCC--eEEE--EE
Confidence 68889999988887776532 222222 22 222444443321110 001112578877775432 4332 22
Q ss_pred eec--CcceEeccc--cCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEeec---CCcEEEEEE
Q 000944 941 QVE--GIPLALCQF--QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGDI---QESFHFCKY 1011 (1213)
Q Consensus 941 ~~~--g~V~ai~~~--~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD~---~~Sv~~l~~ 1011 (1213)
.++ ..+..++-- +++|.++.+ +|++|+....++....+...-......|.+ .+++|+|+|. ..+=.+..|
T Consensus 220 ~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp ECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred ecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 332 356777665 445555544 888888876666433222210123445555 5788999983 334456678
Q ss_pred eccCCeE
Q 000944 1012 RRDENQL 1018 (1213)
Q Consensus 1012 ~~~~~~l 1018 (1213)
+.+...+
T Consensus 299 d~~g~~~ 305 (328)
T 3dsm_A 299 SPQGKLI 305 (328)
T ss_dssp CTTCCEE
T ss_pred CCCCCEE
Confidence 7764333
No 127
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.06 E-value=2.2 Score=48.42 Aligned_cols=178 Identities=10% Similarity=0.111 Sum_probs=105.5
Q ss_pred EEEEEeCCCCceEEEEE--cCCC--ceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE
Q 000944 861 CIRVLDPRSANTTCLLE--LQDN--EAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL 936 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~--~~~~--E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~ 936 (1213)
+++++|..+++.+..+. +..+ ..+.++.. .. ....+++.|.. -|.|.+|++...+..++.
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~-~~~~~l~sgs~------------D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI---NS-LNANMFISGSC------------DTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE---CS-SSCCEEEEEET------------TSCEEEEETTTTCCCCEE
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEe---ec-CCCCEEEEEEC------------CCeEEEEECCCCCcceEE
Confidence 68999998888776653 2222 33444432 21 13467777753 367889988643323332
Q ss_pred EEEEeecCcceEeccc-cCeEEEEeC--CeEEEEecCCceeeceeeec------Cc-cceEEEEEEeCCEEEEeecCCcE
Q 000944 937 LHKTQVEGIPLALCQF-QGRLLAGIG--PVLRLYDLGKKRLLRKCENK------LF-PNTIVSINTYRDRIYVGDIQESF 1006 (1213)
Q Consensus 937 ~~~~~~~g~V~ai~~~-~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~------~~-~~~i~~l~~~~~~I~vgD~~~Sv 1006 (1213)
. ....++|++++-. +|.++++.+ ..|++|++...+....-... .. ....++.+..+.++++|..-..+
T Consensus 245 ~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 322 (380)
T 3iz6_a 245 Y--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322 (380)
T ss_dssp E--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred E--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCE
Confidence 2 2357889888765 455555443 48999999865543221110 00 11234445578999999988888
Q ss_pred EEEEEeccCCeEEEeec--cCCCcceEEEEee-cCCeeeeecCCCcEEEEecCC
Q 000944 1007 HFCKYRRDENQLYIFAD--DSVPRWLTAAHHI-DFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1007 ~~l~~~~~~~~l~~~a~--D~~~~~~~~~~~l-d~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.++.... ...+..+.. ..+...++++.+- |...++.+..+|.+.++++..
T Consensus 323 ~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 323 YVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEETTT-CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEECCC-CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 8754321 223333322 2345567777664 444677889999999998764
No 128
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.02 E-value=7.4 Score=42.97 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=72.4
Q ss_pred EEEEEeCCCCceEEEEEcCCCc----eEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNE----AAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL 936 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E----~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~ 936 (1213)
.+..+|+.+++....+....+. .+..|.. . + +.+++.... ..++|.+++.... ++.
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~--~-~~lyv~~~~-----------~~~~v~viD~~t~--~~~- 165 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---Y--G-KYVYVNCWS-----------YQNRILKIDTETD--KVV- 165 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---E--T-TEEEEEECT-----------TCCEEEEEETTTT--EEE-
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE---E--C-CEEEEEcCC-----------CCCEEEEEECCCC--eEE-
Confidence 6888899998888777765421 3434433 1 2 233333210 1457777776543 322
Q ss_pred EEEEeecCcceEeccc-cCeEEEEeC------------CeEEEEecCCceeeceeeecCccceEEEEEE--eCCEEEEee
Q 000944 937 LHKTQVEGIPLALCQF-QGRLLAGIG------------PVLRLYDLGKKRLLRKCENKLFPNTIVSINT--YRDRIYVGD 1001 (1213)
Q Consensus 937 ~~~~~~~g~V~ai~~~-~g~ll~~~g------------~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~--~~~~I~vgD 1001 (1213)
...+....+..+..- +|+++++.. ..|++++....++.+..... .......|.. .++++++++
T Consensus 166 -~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 166 -DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp -EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEES
T ss_pred -EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEc
Confidence 222333334444432 577766543 36888888766665432221 0113344544 478999988
Q ss_pred cCCcEEEEEEeccCCeE
Q 000944 1002 IQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 1002 ~~~Sv~~l~~~~~~~~l 1018 (1213)
. .++.|+.+..++
T Consensus 244 ~----~v~~~d~~t~~~ 256 (328)
T 3dsm_A 244 N----DIWRMPVEADRV 256 (328)
T ss_dssp S----SEEEEETTCSSC
T ss_pred c----EEEEEECCCCce
Confidence 6 455677655554
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=92.14 E-value=16 Score=39.98 Aligned_cols=208 Identities=11% Similarity=0.072 Sum_probs=115.5
Q ss_pred EEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCccccCC
Q 000944 771 ETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQYGY 850 (1213)
Q Consensus 771 ~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (1213)
....+++..|..++++|..+.+++.......
T Consensus 34 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~------------------------------------------------- 64 (353)
T 3vgz_A 34 MLRKAVGKGAYEMAYSQQENALWLATSQSRK------------------------------------------------- 64 (353)
T ss_dssp EEEEEEESSEEEEEEETTTTEEEEEECCCTT-------------------------------------------------
T ss_pred hhhhhhccCccceEECCCCCEEEEEcCCCcC-------------------------------------------------
Confidence 4567788899999999998887776532100
Q ss_pred CCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeC
Q 000944 851 PKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEE 930 (1213)
Q Consensus 851 p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~ 930 (1213)
......+.++|..+++.+..+..... +.++. +.. ++ .+++|+... .|.|.+|+....
T Consensus 65 -----~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~---~s~-dg-~~l~v~~~~-----------~~~v~~~d~~~~ 121 (353)
T 3vgz_A 65 -----LDKGGVVYRLDPVTLEVTQAIHNDLK--PFGAT---INN-TT-QTLWFGNTV-----------NSAVTAIDAKTG 121 (353)
T ss_dssp -----TEESEEEEEECTTTCCEEEEEEESSC--CCSEE---EET-TT-TEEEEEETT-----------TTEEEEEETTTC
T ss_pred -----CCCCccEEEEcCCCCeEEEEEecCCC--cceEE---ECC-CC-CEEEEEecC-----------CCEEEEEeCCCC
Confidence 00124799999999988887766432 33322 222 22 344444421 357778776543
Q ss_pred CceEEEEEEEeecC----------cceEe--ccccCeEEEEe---CCeEEEEecCCceeeceeeecCccceEEEEEEeCC
Q 000944 931 GKSLELLHKTQVEG----------IPLAL--CQFQGRLLAGI---GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRD 995 (1213)
Q Consensus 931 ~~kl~~~~~~~~~g----------~V~ai--~~~~g~ll~~~---g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~ 995 (1213)
++... ....+ .+.++ .+-+++++++. +..|++|+....+................++..++
T Consensus 122 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 122 --EVKGR--LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp --CEEEE--EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred --eeEEE--EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 32211 12211 13333 33355677665 35799999987665543321111112345556788
Q ss_pred EEEEeecCCcEEEEEEeccCCeEEEee---ccCCCcceEEEEee-cCCeeeeecC-CCcEEEEecC
Q 000944 996 RIYVGDIQESFHFCKYRRDENQLYIFA---DDSVPRWLTAAHHI-DFDTMAGADK-FGNIYFVRLP 1056 (1213)
Q Consensus 996 ~I~vgD~~~Sv~~l~~~~~~~~l~~~a---~D~~~~~~~~~~~l-d~~~~l~~D~-~gnl~il~~~ 1056 (1213)
++++++....+.+ |+....+..... .+....+...+.+- |.+.+++++. .+.+++++..
T Consensus 198 ~l~~~~~~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 198 RLYTTNADGELIT--IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp EEEEECTTSEEEE--EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred EEEEEcCCCeEEE--EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 9999988666654 665555543222 22223344444443 3344555555 4788888653
No 130
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.92 E-value=17 Score=39.70 Aligned_cols=223 Identities=10% Similarity=0.127 Sum_probs=110.5
Q ss_pred ccEEEEEec--C-CEEEEEEeCCEEEEEEEccCCCeE--Eeeeec-cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEE
Q 000944 540 RTIVKVGSN--R-LQVVIALSGGELIYFEVDMTGQLL--EVEKHE-MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRI 613 (1213)
Q Consensus 540 ~~I~~as~~--~-~~v~v~~s~~~l~~l~~~~~~~l~--~~~~~~-l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i 613 (1213)
..|...+.. + .+++-+-.|+.+.+..+....... .+..+. -...|.++++.+ ...+++.|.+|++|++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA------DGAYALSASWDKTLRL 91 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT------TSSEEEEEETTSEEEE
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC------CCCEEEEEeCCCEEEE
Confidence 346666664 2 355555567888888775322111 111111 135688888864 3578999999999999
Q ss_pred EEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCCcccccceeeecC-C
Q 000944 614 LSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGL-R 692 (1213)
Q Consensus 614 ~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~~l~~~~~~~lG~-~ 692 (1213)
|++.....+..+. .....+.-+.+. ....+|+.|..||.+..|.+.. ..+ ....|. .
T Consensus 92 wd~~~~~~~~~~~-----~h~~~v~~~~~~-----------~~~~~l~s~s~D~~i~vwd~~~--~~~----~~~~~h~~ 149 (319)
T 3frx_A 92 WDVATGETYQRFV-----GHKSDVMSVDID-----------KKASMIISGSRDKTIKVWTIKG--QCL----ATLLGHND 149 (319)
T ss_dssp EETTTTEEEEEEE-----CCSSCEEEEEEC-----------TTSCEEEEEETTSCEEEEETTS--CEE----EEECCCSS
T ss_pred EECCCCCeeEEEc-----cCCCcEEEEEEc-----------CCCCEEEEEeCCCeEEEEECCC--CeE----EEEeccCC
Confidence 9995432222211 111222222232 2355788999999998887632 111 111121 1
Q ss_pred CCeEEEEEEC-----CeeEEEEec-CccEEEEEeCC-eEEEEecC-ccccceeeccccCCCCceEEEEe-CCeEEEEEEc
Q 000944 693 PPKLFSVVVG-----GRAAMLCLS-SRPWLGYIHRG-RFLLTPLS-YETLEYAASFSSDQCVEGVVSVA-GNALRVFTIE 763 (1213)
Q Consensus 693 pv~l~~~~~~-----~~~~v~~~g-~~p~~i~~~~~-~~~~~~~~-~~~v~~~~~f~~~~~~~~~i~~~-~~~L~i~~l~ 763 (1213)
++.-..+.-. +...++..| +....++.-+. .+...-.. ...+.+++ |+.. ..-++..+ ++.+++-.+.
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~-~sp~--g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPD--GTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEE-ECTT--SSEEEEEETTCEEEEEETT
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEE-EcCC--CCEEEEEeCCCeEEEEECC
Confidence 1111111000 111233332 33344444322 22111111 11222221 2211 12233333 5678777666
Q ss_pred cCCCeeEEEEEeCCCccceeeecCCCceEEEEE
Q 000944 764 RLGETFNETALPLRYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 764 ~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~ 796 (1213)
. +-.++++.....+..++++|....++.+.
T Consensus 227 ~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 227 A---KKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp T---TEEEEEEECCSCEEEEEECSSSSEEEEEE
T ss_pred C---CcEEEEecCCCcEEEEEEcCCCCEEEEEc
Confidence 4 23566677777888999999877666553
No 131
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.86 E-value=8.5 Score=44.10 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCC-------ceEEEEEEE-eec-------
Q 000944 879 QDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEG-------KSLELLHKT-QVE------- 943 (1213)
Q Consensus 879 ~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~-------~kl~~~~~~-~~~------- 943 (1213)
...+.|.|++ +. ...++++.|+. .|.|.+|++.... ..++.+... ...
T Consensus 26 ~~~~~V~~v~---~s--~~g~~la~g~~------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 88 (447)
T 3dw8_B 26 AEADIISTVE---FN--HSGELLATGDK------------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK 88 (447)
T ss_dssp CGGGSEEEEE---EC--SSSSEEEEEET------------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG
T ss_pred cccCcEEEEE---EC--CCCCEEEEEcC------------CCeEEEEEecCCCCCCcccccceeEecccccccccccccc
Confidence 3445666654 33 23478888874 4889999988642 122222221 122
Q ss_pred -----CcceEeccccC----eEEEEeC-CeEEEEecCCceeec-------------------------------------
Q 000944 944 -----GIPLALCQFQG----RLLAGIG-PVLRLYDLGKKRLLR------------------------------------- 976 (1213)
Q Consensus 944 -----g~V~ai~~~~g----~ll~~~g-~~l~i~~~~~~~l~~------------------------------------- 976 (1213)
++|++++-..+ +|+++.. ..|++|++...+...
T Consensus 89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 78998877633 4555443 589999987533210
Q ss_pred -eeeecCccceEEEEEE--eCCEEEEeecCCcEEEEEEeccCCeEEEe-----eccCCCcceEEEEeecC--CeeeeecC
Q 000944 977 -KCENKLFPNTIVSINT--YRDRIYVGDIQESFHFCKYRRDENQLYIF-----ADDSVPRWLTAAHHIDF--DTMAGADK 1046 (1213)
Q Consensus 977 -~~~~~~~~~~i~~l~~--~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~-----a~D~~~~~~~~~~~ld~--~~~l~~D~ 1046 (1213)
..+...+...|.++.. .+++++.| .-..+.++..+.....+..+ .-..+...++++.+-.. ..++.+..
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 0111112334555554 56888888 45566665443222233322 12234456777777544 46788899
Q ss_pred CCcEEEEecCC
Q 000944 1047 FGNIYFVRLPQ 1057 (1213)
Q Consensus 1047 ~gnl~il~~~~ 1057 (1213)
+|.|.+++...
T Consensus 248 dg~i~iwd~~~ 258 (447)
T 3dw8_B 248 KGTIRLCDMRA 258 (447)
T ss_dssp TSCEEEEETTT
T ss_pred CCeEEEEECcC
Confidence 99999998764
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=90.74 E-value=33 Score=40.87 Aligned_cols=331 Identities=8% Similarity=0.031 Sum_probs=165.2
Q ss_pred eeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCC
Q 000944 599 SRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVT 678 (1213)
Q Consensus 599 ~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~ 678 (1213)
..+++++..+++|.+|+......+..+. ....|+++. +. ....+|+++..+|.+..|.++..+
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~---~g~~~~~v~---~s-----------pdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVID---TGYAVHISR---MS-----------ASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEE---CSTTEEEEE---EC-----------TTSCEEEEEETTSEEEEEETTSSS
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEe---cCcccceEE---EC-----------CCCCEEEEECCCCeEEEEECcCCC
Confidence 3456666668999999874332222222 111234332 22 245578888899999888774233
Q ss_pred CcccccceeeecCCCCeEEEEEE--C-CeeEEEEec--CccEEEEEeC--CeEEEEecCccccc--------eeeccccC
Q 000944 679 GQLSDSRSRFLGLRPPKLFSVVV--G-GRAAMLCLS--SRPWLGYIHR--GRFLLTPLSYETLE--------YAASFSSD 743 (1213)
Q Consensus 679 ~~l~~~~~~~lG~~pv~l~~~~~--~-~~~~v~~~g--~~p~~i~~~~--~~~~~~~~~~~~v~--------~~~~f~~~ 743 (1213)
++. ......|..|..+. +.- + +...+++.+ +....++... ..+...+.....+. .+..+...
T Consensus 212 ~~~--~~~i~~g~~p~~va-~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 212 PTK--VAEIKIGIEARSVE-SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CEE--EEEEECCSEEEEEE-ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CcE--EEEEecCCCcceEE-eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 322 12223344342222 111 0 223344443 2233344311 11222222110000 00000000
Q ss_pred CCCceEEEEe---CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCC
Q 000944 744 QCVEGVVSVA---GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGM 820 (1213)
Q Consensus 744 ~~~~~~i~~~---~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1213)
. .+..++++ .+.+.+...... ..+.+.+++.+..|+.++++|..+.++++...
T Consensus 289 ~-~~~~~~vs~~~~g~i~vvd~~~~-~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---------------------- 344 (543)
T 1nir_A 289 H-EHPEFIVNVKETGKVLLVNYKDI-DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---------------------- 344 (543)
T ss_dssp S-SSSEEEEEETTTTEEEEEECTTS-SSCEEEEEECCSSCCCEEECTTSCEEEEEEGG----------------------
T ss_pred C-CCCEEEEEECCCCeEEEEEecCC-CcceeEEeccCcCccCceECCCCCEEEEEecC----------------------
Confidence 0 12233333 457777666653 34556788989999999999998877666421
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceE
Q 000944 821 GENGNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTL 900 (1213)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~ 900 (1213)
...+.++|..+++.+..++....-+.-....+ + ..+...+
T Consensus 345 --------------------------------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~-~p~~g~~ 384 (543)
T 1nir_A 345 --------------------------------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V-HPKYGPV 384 (543)
T ss_dssp --------------------------------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E-ETTTEEE
T ss_pred --------------------------------------CCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C-CCCCccE
Confidence 01688899999988877765322111001111 1 1122345
Q ss_pred EEEEeeecCccCCCCCCcccEEEEEEEEeCCc---eEEEEEEEeec-CcceEec--cccCeEEEEe--------CCeEEE
Q 000944 901 LAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGK---SLELLHKTQVE-GIPLALC--QFQGRLLAGI--------GPVLRL 966 (1213)
Q Consensus 901 i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~---kl~~~~~~~~~-g~V~ai~--~~~g~ll~~~--------g~~l~i 966 (1213)
++.+.. ..+.|.+|+++..+. .++.+...+.. +.+..|. +=..+|.++. .+.|.+
T Consensus 385 ~~s~~~-----------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 385 WSTSHL-----------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp EEEEBS-----------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred EEeccC-----------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 443321 135788898876321 24455554443 3444443 3344666665 459999
Q ss_pred EecCCceee----ceee---ecCccceEEEEEE--eCCEEEEeec----C-CcEEEEEEeccCCeEEEeeccCC
Q 000944 967 YDLGKKRLL----RKCE---NKLFPNTIVSINT--YRDRIYVGDI----Q-ESFHFCKYRRDENQLYIFADDSV 1026 (1213)
Q Consensus 967 ~~~~~~~l~----~~~~---~~~~~~~i~~l~~--~~~~I~vgD~----~-~Sv~~l~~~~~~~~l~~~a~D~~ 1026 (1213)
|+....+.. .++. +...+-.++++.. .+++++++-- . ..|.+ |+....++...-+|..
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v--~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV--VDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE--EETTTTEEEEEECCTT
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE--EECCCceEEEeecCCC
Confidence 999854432 1111 0111345666654 4788887643 2 23443 7766666666666543
No 133
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=90.73 E-value=22 Score=38.90 Aligned_cols=116 Identities=11% Similarity=0.171 Sum_probs=68.4
Q ss_pred ccEEEEEecCCEEEEEEeCCEEEEEEEccCCCeEEeeeec---cCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEe
Q 000944 540 RTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHE---MSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSL 616 (1213)
Q Consensus 540 ~~I~~as~~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~---l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl 616 (1213)
..|...+...++++.+..++.+.++.+... .......+. -...|.|+++.+ ...+++.|.+|++|+||++
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp------~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRP------HTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECT------TSSEEEEEETTSCEEEEEC
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECC------CCCEEEEEeCCCcEEEEEc
Confidence 457777777776666666888988876532 222222221 234689999865 3568999999999999998
Q ss_pred CCCC----ceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 617 DPDD----CMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 617 ~p~~----~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
+... ....+. .+......+.-+.+. ....+|+.|..||.+..|.++
T Consensus 88 ~~~~~~~~~~~~~~--~~~~h~~~V~~v~~s-----------p~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 88 EESADRTFEMDLLA--IIEGHENEVKGVAWS-----------NDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp -------CCCEEEE--EEC----CEEEEEEC-----------TTSCEEEEEETTSCEEEEECC
T ss_pred ccCcCccccceeEE--EEcCCCCcEEEEEEC-----------CCCCEEEEEeCCCEEEEEecc
Confidence 4210 111111 111111222222332 234578899999999988874
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.24 E-value=24 Score=38.51 Aligned_cols=205 Identities=12% Similarity=0.081 Sum_probs=114.2
Q ss_pred eEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccccCCCCCCCCCCCCcccc
Q 000944 769 FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKYDPLSDEQY 848 (1213)
Q Consensus 769 ~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1213)
-..++++.+..|+.++++|..+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-------------------------------------------------- 109 (353)
T 3vgz_A 80 EVTQAIHNDLKPFGATINNTTQTLWFGNTV-------------------------------------------------- 109 (353)
T ss_dssp CEEEEEEESSCCCSEEEETTTTEEEEEETT--------------------------------------------------
T ss_pred eEEEEEecCCCcceEEECCCCCEEEEEecC--------------------------------------------------
Confidence 457788888899999999988866665320
Q ss_pred CCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCce--------EEEEEEEEeccCCCceEEEEEeeecCccCCCCCCccc
Q 000944 849 GYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEA--------AFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAG 920 (1213)
Q Consensus 849 ~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~--------v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~G 920 (1213)
...+.++|..+++.+..+.+..... +.++ .+.. + ..+++++... ..|
T Consensus 110 ----------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~-d-g~~l~~~~~~----------~~~ 164 (353)
T 3vgz_A 110 ----------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL---VADD-A-TNTVYISGIG----------KES 164 (353)
T ss_dssp ----------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE---EEET-T-TTEEEEEEES----------SSC
T ss_pred ----------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE---EECC-C-CCEEEEEecC----------CCc
Confidence 0268889999998888887754332 3333 2332 2 2345555421 147
Q ss_pred EEEEEEEEeCCceEEEEEEEe-ecCcceEec--cccCeEEEEeC-CeEEEEecCCceeeceeeec--CccceEE--EEEE
Q 000944 921 YIHIYRFVEEGKSLELLHKTQ-VEGIPLALC--QFQGRLLAGIG-PVLRLYDLGKKRLLRKCENK--LFPNTIV--SINT 992 (1213)
Q Consensus 921 ri~v~~i~~~~~kl~~~~~~~-~~g~V~ai~--~~~g~ll~~~g-~~l~i~~~~~~~l~~~~~~~--~~~~~i~--~l~~ 992 (1213)
+|++|+.... +.. .... ....+.+++ +-+.+|+++.. +.+++|+....+........ .....+. .++.
T Consensus 165 ~i~~~d~~~~--~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 165 VIWVVDGGNI--KLK--TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEEEETTTT--EEE--EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred eEEEEcCCCC--ceE--EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 7888876532 322 2222 222244443 33456666544 58999999876655433221 0122343 4444
Q ss_pred eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeec-CCCcEEEEecC
Q 000944 993 YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGAD-KFGNIYFVRLP 1056 (1213)
Q Consensus 993 ~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D-~~gnl~il~~~ 1056 (1213)
.++++++++...+ .+..|+....++...-.-..+ ..+.+- |...+++++ .++.+.+++..
T Consensus 241 dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 241 ARQRAFITDSKAA-EVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTTEEEEEESSSS-EEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEeCCCC-EEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 5889999987633 234466544443322222222 223333 333455555 57888887653
No 135
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=89.74 E-value=24 Score=37.67 Aligned_cols=135 Identities=12% Similarity=0.075 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 860 s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
+.|..+|+.+++++..+.++++.....+.. . + + .+.+.|- ..|++.+++.. .++++..
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~---~--g-~-~lyv~t~-----------~~~~v~viD~~----t~~v~~~ 101 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTL---L--N-E-KLYQVVW-----------LKNIGFIYDRR----TLSNIKN 101 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEE---E--T-T-EEEEEET-----------TCSEEEEEETT----TTEEEEE
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEE---e--C-C-EEEEEEe-----------cCCEEEEEECC----CCcEEEE
Confidence 489999999999999998877655544333 1 2 2 3444442 24677776654 3445555
Q ss_pred Eeec-CcceEeccccCeEEEEeCC-eEEEEecCCceeeceeeec-C-cc-ceEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 000944 940 TQVE-GIPLALCQFQGRLLAGIGP-VLRLYDLGKKRLLRKCENK-L-FP-NTIVSINTYRDRIYVGDIQESFHFCKYRRD 1014 (1213)
Q Consensus 940 ~~~~-g~V~ai~~~~g~ll~~~g~-~l~i~~~~~~~l~~~~~~~-~-~~-~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~ 1014 (1213)
..+. +.-..++.-+++|+++-|. +|.+++....+..+..... . .+ .....+...+.++++...... .+...+..
T Consensus 102 i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~-~V~vID~~ 180 (266)
T 2iwa_A 102 FTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD-CIARISAK 180 (266)
T ss_dssp EECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEEETT
T ss_pred EECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC-eEEEEECC
Confidence 5454 4446678777889888774 7878877654433221111 0 01 123455555778887775543 45556665
Q ss_pred CCe
Q 000944 1015 ENQ 1017 (1213)
Q Consensus 1015 ~~~ 1017 (1213)
..+
T Consensus 181 tg~ 183 (266)
T 2iwa_A 181 DGT 183 (266)
T ss_dssp TCC
T ss_pred CCc
Confidence 443
No 136
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.56 E-value=19 Score=42.90 Aligned_cols=144 Identities=6% Similarity=0.012 Sum_probs=84.3
Q ss_pred CCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCc---eEEEEEE-----EeecCcceEeccccCeEEEEe-CCeEEE
Q 000944 896 EHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGK---SLELLHK-----TQVEGIPLALCQFQGRLLAGI-GPVLRL 966 (1213)
Q Consensus 896 ~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~---kl~~~~~-----~~~~g~V~ai~~~~g~ll~~~-g~~l~i 966 (1213)
...+++++|+. -|.|.+|++..+.. ++-.+.. ....+.|++++-..+.|+++. ++.+++
T Consensus 139 PDG~~LAsgs~------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrl 206 (588)
T 2j04_A 139 PIESSIVVGNE------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFS 206 (588)
T ss_dssp SSSSCEEEEET------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEE
T ss_pred CCCCEEEEEcC------------CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEE
Confidence 34579999974 58899999876411 1112222 223468999977755555543 468999
Q ss_pred EecCCceeec-eeee-cCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCC--ee
Q 000944 967 YDLGKKRLLR-KCEN-KLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFD--TM 1041 (1213)
Q Consensus 967 ~~~~~~~l~~-~~~~-~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~--~~ 1041 (1213)
|++..+++.. ...+ ......|.++...+++|+.+- .+.|.+ |+....++...-.. +.-.++.+.+. +++ .+
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkL--Wd~~~~~~~~~~~g-h~~~V~~va~~~s~d~~~L 282 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHK--IDLKNYSISSLKTG-SLENFHIIPLNHEKESTIL 282 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEE--EETTTTEEEEEECS-CCSCCCEEEETTCSSCEEE
T ss_pred EECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEE--EECCCCeEEEEEcC-CCceEEEEEeeeCCCCCEE
Confidence 9998766421 1111 111234555555577777664 466666 55556666444322 45556666662 223 46
Q ss_pred eeecCCCcEEEEecC
Q 000944 1042 AGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1042 l~~D~~gnl~il~~~ 1056 (1213)
+.++.+|. .++..+
T Consensus 283 a~a~edG~-klw~~d 296 (588)
T 2j04_A 283 LMSNKTSY-KVLLED 296 (588)
T ss_dssp EECSSCEE-EEEESS
T ss_pred EEEcCCCC-EEEeec
Confidence 78888888 555553
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=89.36 E-value=27 Score=37.91 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=32.5
Q ss_pred CCEEEEE-EeCCEEEEEEEccCCCeEEeeeeccCc--ceEEEEeeecCCCceeeeEEEEEE-eCCcEEEEEeC
Q 000944 549 RLQVVIA-LSGGELIYFEVDMTGQLLEVEKHEMSG--DVACLDIASVPEGRKRSRFLAVGS-YDNTIRILSLD 617 (1213)
Q Consensus 549 ~~~v~v~-~s~~~l~~l~~~~~~~l~~~~~~~l~~--~is~i~i~~~~~~~~~~~~l~v~~-~~~~i~i~sl~ 617 (1213)
+..++++ ..+++|.++... ++++. ....... .+.++++.+ ...+++++. .++.|.+|.++
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~-~~~~~--~~~~~~~~~~~~~~~~s~------dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVA-SDTVY--KSCVMPDKFGPGTAMMAP------DNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp TCEEEEEEETTTEEEEEETT-TTEEE--EEEECSSCCSSCEEEECT------TSSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEeCCCCeEEEEECC-CCcEE--EEEecCCCCCCceeEECC------CCCEEEEEeCCCCcEEEEeCC
Confidence 3444443 345677776543 23322 2333333 566777754 234555554 47899999874
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=88.75 E-value=29 Score=37.48 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=80.4
Q ss_pred Ce-EEEEEEccCCCe--eEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcccc
Q 000944 755 NA-LRVFTIERLGET--FNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQM 831 (1213)
Q Consensus 755 ~~-L~i~~l~~~~~~--~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1213)
+. +.+..++.-+.. ...+.++.+..|+.++++|+.+.+++....
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--------------------------------- 196 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI--------------------------------- 196 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT---------------------------------
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC---------------------------------
Confidence 56 888888752111 113556778889999999998866665421
Q ss_pred cCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCce---EEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeec
Q 000944 832 ENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANT---TCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKG 908 (1213)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~---~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~ 908 (1213)
...+.++|..+++. +..+.. +..+.++. +. ....+++++..
T Consensus 197 ---------------------------~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~---~s--pdg~~l~v~~~-- 240 (331)
T 3u4y_A 197 ---------------------------GNSIGILETQNPENITLLNAVGT--NNLPGTIV---VS--RDGSTVYVLTE-- 240 (331)
T ss_dssp ---------------------------TTEEEEEECSSTTSCEEEEEEEC--SSCCCCEE---EC--TTSSEEEEECS--
T ss_pred ---------------------------CCeEEEEECCCCcccceeeeccC--CCCCceEE---EC--CCCCEEEEEEc--
Confidence 02577888877776 554442 33333332 32 22345555543
Q ss_pred CccCCCCCCcccEEEEEEEEeCCceEEEEEEEee-----cCcce-----EeccccCeEEEEeC--CeEEEEecCCceee
Q 000944 909 LQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQV-----EGIPL-----ALCQFQGRLLAGIG--PVLRLYDLGKKRLL 975 (1213)
Q Consensus 909 ~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~-----~g~V~-----ai~~~~g~ll~~~g--~~l~i~~~~~~~l~ 975 (1213)
..+.|.+|+.... +++.+..... ..++. ++.+-+.+|+++.+ +.|.+|++..+...
T Consensus 241 ---------~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 241 ---------STVDVFNFNQLSG--TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp ---------SEEEEEEEETTTT--EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred ---------CCCEEEEEECCCC--ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 1356777776543 5544443221 12222 44444556766553 48999999876543
No 139
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=87.94 E-value=20 Score=37.66 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=86.8
Q ss_pred eeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE
Q 000944 859 VSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH 938 (1213)
Q Consensus 859 ~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~ 938 (1213)
.|+|+.+|+.+++++.++.+++.-....+..+ + +..+ +.|-. .|++++|+.. .++++.
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-----~-~~ly-~ltw~-----------~~~v~v~D~~----tl~~~~ 99 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-----R-DRLI-QLTWR-----------NHEGFVYDLA----TLTPRA 99 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----T-TEEE-EEESS-----------SSEEEEEETT----TTEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCcceeEEEEe-----C-CEEE-EEEee-----------CCEEEEEECC----cCcEEE
Confidence 36899999999999999988765333333221 2 2333 33432 4677777654 566776
Q ss_pred EEeecCcceEeccccCeEEEEeCC-eEEEEecCCceeeceeee--cCcc-ceEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 000944 939 KTQVEGIPLALCQFQGRLLAGIGP-VLRLYDLGKKRLLRKCEN--KLFP-NTIVSINTYRDRIYVGDIQESFHFCKYRRD 1014 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~~g~ll~~~g~-~l~i~~~~~~~l~~~~~~--~~~~-~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~ 1014 (1213)
+....+.-.++|.-+++|+++-|. +|++++...-+.++.-.. +..+ ..+.-|...+.+|++..-+.- .+++.++.
T Consensus 100 ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~-~I~vIDp~ 178 (243)
T 3mbr_X 100 RFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS-RIARIDPA 178 (243)
T ss_dssp EEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT-EEEEECTT
T ss_pred EEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC-eEEEEECC
Confidence 767777778888888899998885 788887765444332111 1112 234567777889888875544 56667665
Q ss_pred CCe
Q 000944 1015 ENQ 1017 (1213)
Q Consensus 1015 ~~~ 1017 (1213)
..+
T Consensus 179 tG~ 181 (243)
T 3mbr_X 179 SGK 181 (243)
T ss_dssp TCB
T ss_pred CCC
Confidence 544
No 140
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.94 E-value=35 Score=36.36 Aligned_cols=174 Identities=11% Similarity=0.044 Sum_probs=86.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK- 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~- 939 (1213)
.+..+|+ +++.+..+.......+.++.. +. ...+++..... .+|++.|+ .+|+.+.....
T Consensus 57 ~V~~~d~-~G~~~W~~~~~~~~~~~~~~~--~~---dG~~lv~~~~~-----------~~~v~~vd--~~Gk~l~~~~~~ 117 (276)
T 3no2_A 57 GAKMITR-DGRELWNIAAPAGCEMQTARI--LP---DGNALVAWCGH-----------PSTILEVN--MKGEVLSKTEFE 117 (276)
T ss_dssp EEEEECT-TSCEEEEEECCTTCEEEEEEE--CT---TSCEEEEEEST-----------TEEEEEEC--TTSCEEEEEEEC
T ss_pred CEEEECC-CCCEEEEEcCCCCccccccEE--CC---CCCEEEEecCC-----------CCEEEEEe--CCCCEEEEEecc
Confidence 5788898 788888888754334443322 22 23455554421 35665554 44433322211
Q ss_pred EeecC---cceEecc-ccCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEec
Q 000944 940 TQVEG---IPLALCQ-FQGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRR 1013 (1213)
Q Consensus 940 ~~~~g---~V~ai~~-~~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~ 1013 (1213)
....+ ++..+.. -+|.++++. +.+|+.|+.+ .+++........+ +.+.....++.+ +++...+ .++.|+.
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~-~~~~~~~~g~~~-v~~~~~~-~v~~~d~ 193 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP-FSSAFLDNGDCL-VACGDAH-CFVQLNL 193 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC-CEEEECTTSCEE-EECBTTS-EEEEECT
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc-cceeEcCCCCEE-EEeCCCC-eEEEEeC
Confidence 11111 1222222 255555544 3578888887 4443332221112 222333334554 4444444 3677887
Q ss_pred c-CCeEEEeec-cC---CCcceEEEEeecCCeeeeecCCC---------cEEEEecCC
Q 000944 1014 D-ENQLYIFAD-DS---VPRWLTAAHHIDFDTMAGADKFG---------NIYFVRLPQ 1057 (1213)
Q Consensus 1014 ~-~~~l~~~a~-D~---~~~~~~~~~~ld~~~~l~~D~~g---------nl~il~~~~ 1057 (1213)
+ ...+-.+++ +. ...+++.+..+.++.+++++..| +..++++++
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 7 444555543 21 22456666677777777777543 335666654
No 141
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=86.64 E-value=43 Score=37.08 Aligned_cols=57 Identities=5% Similarity=0.116 Sum_probs=36.2
Q ss_pred CEEEEEEEcc-CCCeEEeeeeccC--cceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCce
Q 000944 559 GELIYFEVDM-TGQLLEVEKHEMS--GDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCM 622 (1213)
Q Consensus 559 ~~l~~l~~~~-~~~l~~~~~~~l~--~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l 622 (1213)
+.|..++++. +|++..+...... ..++++++.+ ...+++++.++ .+.+|.++++..+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp------dg~~l~~~~~~-~v~~~~~~~~g~~ 73 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH------ERKNIYGAAMK-KWSSFAVKSPTEI 73 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT------TSSEEEEEEBT-EEEEEEEEETTEE
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC------CCCEEEEEccc-eEEEEEECCCCCE
Confidence 4688888875 4666655443322 3577888854 24567777777 8999998534333
No 142
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.95 E-value=23 Score=38.05 Aligned_cols=137 Identities=15% Similarity=0.105 Sum_probs=80.4
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC-------CeEEEEecC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG-------PVLRLYDLG 970 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g-------~~l~i~~~~ 970 (1213)
..++++|-... ......+.+|+.... +.+.+......-.-.+++.++++|++.-| +.+..|++.
T Consensus 113 ~~lyv~GG~~~-------~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 113 DMIYVSGGFDG-------SRRHTSMERYDPNID--QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183 (301)
T ss_dssp TEEEEECCBCS-------SCBCCEEEEEETTTT--EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CEEEEEcccCC-------CcccceEEEEcCCCC--eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCC
Confidence 36777775421 112456777776654 56655543333333456667888877543 468889988
Q ss_pred CceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeee
Q 000944 971 KKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGA 1044 (1213)
Q Consensus 971 ~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~ 1044 (1213)
..++...+... .+..-.++.+.++.|+ +|-... .-.+..|+.+.++-..++.-+.++...++..+++.-++.+
T Consensus 184 ~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 184 TGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp TTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 87776654433 1223334455566665 553321 2245668888888888887777777666666665444443
No 143
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=84.91 E-value=43 Score=35.45 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=83.8
Q ss_pred eeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEE
Q 000944 859 VSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLH 938 (1213)
Q Consensus 859 ~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~ 938 (1213)
.|.|+.+|+.+++++.++.+++.--...+.. . + +.. .+.|-. .+++++|+.. .++++.
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~---~--g-~~l-y~ltw~-----------~~~v~v~D~~----t~~~~~ 121 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELGKRYFGEGISD---W--K-DKI-VGLTWK-----------NGLGFVWNIR----NLRQVR 121 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECCTTCCEEEEEE---E--T-TEE-EEEESS-----------SSEEEEEETT----TCCEEE
T ss_pred CceEEEEECCCCcEEEEEecCCccceeEEEE---e--C-CEE-EEEEee-----------CCEEEEEECc----cCcEEE
Confidence 3689999999999999998876432223322 1 2 233 333432 4667677654 466666
Q ss_pred EEeecCcceEeccccCeEEEEeCC-eEEEEecCCceeeceeee-c-Ccc-ceEEEEEEeCCEEEEeecCCcEEEEEEecc
Q 000944 939 KTQVEGIPLALCQFQGRLLAGIGP-VLRLYDLGKKRLLRKCEN-K-LFP-NTIVSINTYRDRIYVGDIQESFHFCKYRRD 1014 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~~g~ll~~~g~-~l~i~~~~~~~l~~~~~~-~-~~~-~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~ 1014 (1213)
+..+.+--.+++.-+++|+++-|. +|.+++....+.++.-.. + ..+ ..+..|...+.+|++..-+.. .+++.++.
T Consensus 122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~-~I~vIDp~ 200 (262)
T 3nol_A 122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTN-KIVRIDPE 200 (262)
T ss_dssp EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS-EEEEECTT
T ss_pred EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCC-eEEEEECC
Confidence 666666556788778889998874 677777765443332111 1 111 223446667888998886554 56667766
Q ss_pred CCeE
Q 000944 1015 ENQL 1018 (1213)
Q Consensus 1015 ~~~l 1018 (1213)
..+.
T Consensus 201 tG~V 204 (262)
T 3nol_A 201 TGKV 204 (262)
T ss_dssp TCBE
T ss_pred CCcE
Confidence 5544
No 144
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.37 E-value=14 Score=44.03 Aligned_cols=141 Identities=8% Similarity=0.015 Sum_probs=82.0
Q ss_pred eEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEec-cc--cC-eEEEEeC--CeEEEEecCCc
Q 000944 899 TLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALC-QF--QG-RLLAGIG--PVLRLYDLGKK 972 (1213)
Q Consensus 899 ~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~-~~--~g-~ll~~~g--~~l~i~~~~~~ 972 (1213)
..|+.|+. -|.|.+|++......... -....++|++|+ .+ +| +++++.+ .+|++|++.+.
T Consensus 278 ~~lasgs~------------DgtV~lWD~~~~~~~~~~--~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 278 TTVVCGFK------------NGFVAEFDLTDPEVPSFY--DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp SEEEEEET------------TSEEEEEETTBCSSCSEE--EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CeEEEEeC------------CCEEEEEECCCCCCceEE--eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 46787764 488999998754211111 123578999994 33 34 6666444 58999999765
Q ss_pred eeeceee--ecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecCCCc
Q 000944 973 RLLRKCE--NKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFGN 1049 (1213)
Q Consensus 973 ~l~~~~~--~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~gn 1049 (1213)
+...... ....+...++.+..+..++.|+..+.+.++..+. ...+..+.. +...++++.+- +...++.+..+|.
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTE
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeec--CCCceEEEEeCCCCCeEEEEECCCE
Confidence 4322211 1100112344444567888888888887754432 222222222 34567777764 3345677888999
Q ss_pred EEEEecC
Q 000944 1050 IYFVRLP 1056 (1213)
Q Consensus 1050 l~il~~~ 1056 (1213)
+.+++..
T Consensus 421 v~lwd~~ 427 (524)
T 2j04_B 421 LIITNAA 427 (524)
T ss_dssp EECCBSC
T ss_pred EEEEech
Confidence 9887653
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=84.36 E-value=15 Score=38.57 Aligned_cols=173 Identities=10% Similarity=0.020 Sum_probs=91.1
Q ss_pred eeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEe-CCceEEEE
Q 000944 859 VSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVE-EGKSLELL 937 (1213)
Q Consensus 859 ~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~-~~~kl~~~ 937 (1213)
...|.++|..+.+....... .+.+.++. +. ....+++++. .|.|++|++.. . +.+.+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~--~~~v~~~~---~s--pdg~~l~~~~-------------~~~i~~~d~~~~~--~~~~~ 78 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT--PELFEAPN---WS--PDGKYLLLNS-------------EGLLYRLSLAGDP--SPEKV 78 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE--SSCCEEEE---EC--TTSSEEEEEE-------------TTEEEEEESSSCC--SCEEC
T ss_pred ceeEEEEeCCCCceeeeccC--CcceEeeE---EC--CCCCEEEEEc-------------CCeEEEEeCCCCC--CceEe
Confidence 35899999988776543332 33444443 33 2335777653 35788888865 3 33333
Q ss_pred EEEeecCcceEeccc-cC-eEEEEe-----CCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEE-EeecCCcEEEE
Q 000944 938 HKTQVEGIPLALCQF-QG-RLLAGI-----GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQESFHFC 1009 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~-~g-~ll~~~-----g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~Sv~~l 1009 (1213)
......+.|.+++-- +| +|+++. ..+|+.++....+....... .+......+..+++|+ .+..-..+.++
T Consensus 79 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 79 DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC--CCccceEECCCCCEEEEEECCCCceEEE
Confidence 222223455444332 34 455555 13555566554443222211 1212223334567776 56666677888
Q ss_pred EEeccCCeEEEeeccCCCcceEEEEeecCC-eee-eecCCCcEEEEecCC
Q 000944 1010 KYRRDENQLYIFADDSVPRWLTAAHHIDFD-TMA-GADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1010 ~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l-~~D~~gnl~il~~~~ 1057 (1213)
.++.+......+... ...+.++.+-.++ .++ +++.++.+.++.++.
T Consensus 157 ~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 157 SMDIDSGVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp EEETTTCCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred EEECCCCcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 887666666555443 2345555554333 343 455577777777653
No 146
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=82.98 E-value=83 Score=37.27 Aligned_cols=181 Identities=8% Similarity=0.057 Sum_probs=101.3
Q ss_pred CCeEEEEEEccCCCeeEEEEEeCCCccceeeecC----CCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCCCCCCcc
Q 000944 754 GNALRVFTIERLGETFNETALPLRYTPRRFVLQP----KKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMD 829 (1213)
Q Consensus 754 ~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1213)
++.+.+..++.- ..-.+++++.+..|+.++++| +.+.++++...
T Consensus 199 d~~V~v~D~~~~-t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------------------------------- 246 (543)
T 1nir_A 199 DARIDMIDLWAK-EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------------------------------- 246 (543)
T ss_dssp TSEEEEEETTSS-SCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-------------------------------
T ss_pred CCeEEEEECcCC-CCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc-------------------------------
Confidence 456666666311 223577899999999999999 88877776410
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCC----------CceEEEEEEEEeccCCCce
Q 000944 830 QMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQD----------NEAAFSICTVNFHDKEHGT 899 (1213)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~----------~E~v~s~~~~~l~~~~~~~ 899 (1213)
..++.++|..+++.+..+.... +-++.++. +.. ++ .
T Consensus 247 -----------------------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~---~s~-~~-~ 292 (543)
T 1nir_A 247 -----------------------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII---ASH-EH-P 292 (543)
T ss_dssp -----------------------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE---ECS-SS-S
T ss_pred -----------------------------CCeEEEEeccccccceeecccCcccCccccccCCceEEEE---ECC-CC-C
Confidence 1268888998888887776531 11444432 221 22 3
Q ss_pred EEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEe--ccccCeEEEEeC--CeEEEEecCCceee
Q 000944 900 LLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLAL--CQFQGRLLAGIG--PVLRLYDLGKKRLL 975 (1213)
Q Consensus 900 ~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai--~~~~g~ll~~~g--~~l~i~~~~~~~l~ 975 (1213)
.++|... ..|+|.++++.... .++ +........+..+ .+-+.+++++.. ++|.+|+....++.
T Consensus 293 ~~~vs~~-----------~~g~i~vvd~~~~~-~l~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 293 EFIVNVK-----------ETGKVLLVNYKDID-NLT-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp EEEEEET-----------TTTEEEEEECTTSS-SCE-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEEC-----------CCCeEEEEEecCCC-cce-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 3443321 14788888876532 232 1222233334433 333445666653 68999999887776
Q ss_pred ceeeecCccc--eEEEEE-EeCCEEEEeec--CCcEEEEEEec
Q 000944 976 RKCENKLFPN--TIVSIN-TYRDRIYVGDI--QESFHFCKYRR 1013 (1213)
Q Consensus 976 ~~~~~~~~~~--~i~~l~-~~~~~I~vgD~--~~Sv~~l~~~~ 1013 (1213)
........|. ....+. ..+..+++... -+.|.++..++
T Consensus 360 ~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 5432211121 223332 22355665543 35777766654
No 147
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=82.90 E-value=17 Score=41.20 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=62.1
Q ss_pred EeccccCeEEEEeCCeEEEEecCCce---------eeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccC--C
Q 000944 948 ALCQFQGRLLAGIGPVLRLYDLGKKR---------LLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDE--N 1016 (1213)
Q Consensus 948 ai~~~~g~ll~~~g~~l~i~~~~~~~---------l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~--~ 1016 (1213)
++..-.|.+++|.++++.+|+.++-+ +.+..... ++. +++|...++++++| ...++.++..+.-. .
T Consensus 44 ais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~ 120 (388)
T 1xip_A 44 DISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFR 120 (388)
T ss_dssp EEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEE
T ss_pred EEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccC
Confidence 44555678888888999999875322 33333333 566 88888877899999 44455554332211 1
Q ss_pred eEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecCC
Q 000944 1017 QLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1017 ~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~~ 1057 (1213)
.+..+ ...+.++.++.. .+++...+|.|++++...
T Consensus 121 ~~~~~-----~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 121 TVTSF-----EKPVFQLKNVNN-TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEC-----SSCEEEEEECSS-EEEEEETTSEEEEEETTT
T ss_pred cccee-----ecceeeEEecCC-CEEEEECCCCEEEEEccC
Confidence 11111 122445555544 478889999999998764
No 148
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=82.36 E-value=1.3e+02 Score=39.22 Aligned_cols=155 Identities=10% Similarity=0.138 Sum_probs=97.5
Q ss_pred EEeecCcceEeccc------cCeEEEEeC-----------CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEee
Q 000944 939 KTQVEGIPLALCQF------QGRLLAGIG-----------PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGD 1001 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~------~g~ll~~~g-----------~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD 1001 (1213)
+.+.+-.+.|++.+ +.+|++|.+ ..|++|++.+++|....... ..-.+++|..+++++++|
T Consensus 824 ~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~~g~Lla~- 901 (1158)
T 3ei3_A 824 QFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEFNGKLLAS- 901 (1158)
T ss_dssp ECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEETTEEEEE-
T ss_pred eCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeeeCCEEEEE-
Confidence 33445666666643 257888762 36899999877776665554 345789999999998887
Q ss_pred cCCcEEEEEEeccCCeEEEeeccCCCcceEEEEe-ecCCeeeeecCCCcEEEEecCCCCCcccccCCCCCccccccCccC
Q 000944 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH-IDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN 1080 (1213)
Q Consensus 1002 ~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~-ld~~~~l~~D~~gnl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1213)
+-+.+.++.|..+ +.|..-++.+.. ++.... ...+.++++|....+++++|.+.
T Consensus 902 ig~~l~vy~l~~~-~~L~~~~~~~~~--i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~---------------------- 956 (1158)
T 3ei3_A 902 INSTVRLYEWTTE-KELRTECNHYNN--IMALYLKTKGDFILVGDLMRSVLLLAYKPM---------------------- 956 (1158)
T ss_dssp ETTEEEEEEECTT-SCEEEEEEECCC--SCEEEEEEETTEEEEEESSBCEEEEEEETT----------------------
T ss_pred cCCEEEEEECCCC-ceEEEEeecccc--EEEEEEeccCCEEEEEEhhheEEEEEEEcC----------------------
Confidence 4578889888753 234321222211 222222 23578999999999999999762
Q ss_pred CcccceeeeeeeecCceeceEEEeeecCCCccEEEEEecccceEEEE
Q 000944 1081 GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAML 1127 (1213)
Q Consensus 1081 ~~~~~L~~~~~~~lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l~ 1127 (1213)
..+|...+.=....-+++.... +...++.+-..|.|..+.
T Consensus 957 --~~~L~~~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 957 --EGNFEEIARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp --TTEEEEEEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEE
T ss_pred --CCeEEEEEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEe
Confidence 2356665544444455544432 123566677788887554
No 149
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=81.72 E-value=69 Score=35.46 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=89.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEE-EEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAF-SICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~-s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~ 939 (1213)
.+..+|+.+++.+..++........ ......+. ...+++|+. .|+++.|+...+ ++. ..
T Consensus 154 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~~g~~------------~g~l~~~d~~tG--~~~--w~ 213 (376)
T 3q7m_A 154 QLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAVVGGD------------NGRVSAVLMEQG--QMI--WQ 213 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEEECCT------------TTEEEEEETTTC--CEE--EE
T ss_pred eEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEEEEcC------------CCEEEEEECCCC--cEE--EE
Confidence 6888999999998888765321100 00000011 135666653 467777776543 211 11
Q ss_pred EeecCc-----------c-eEeccccCeEEEEe-CCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcE
Q 000944 940 TQVEGI-----------P-LALCQFQGRLLAGI-GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESF 1006 (1213)
Q Consensus 940 ~~~~g~-----------V-~ai~~~~g~ll~~~-g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv 1006 (1213)
....++ + ......++.++++. +..++.++....+.+-... .+ ....+...++.|++++....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~-~~~~~~~~~~~l~~~~~~g~l 289 (376)
T 3q7m_A 214 QRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LG-SVNDFIVDGNRIYLVDQNDRV 289 (376)
T ss_dssp EECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CC-CEEEEEEETTEEEEEETTCCE
T ss_pred EecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CC-CCCCceEECCEEEEEcCCCeE
Confidence 111111 1 11122367777765 5688888887655432221 12 234566779999999987675
Q ss_pred EEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEecC
Q 000944 1007 HFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1007 ~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~~ 1056 (1213)
.. ++....+...-..........+ -.+.++.+++++.+|.|++++..
T Consensus 290 ~~--~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 290 MA--LTIDGGVTLWTQSDLLHRLLTS-PVLYNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp EE--EETTTCCEEEEECTTTTSCCCC-CEEETTEEEEECTTSEEEEEETT
T ss_pred EE--EECCCCcEEEeecccCCCcccC-CEEECCEEEEEeCCCeEEEEECC
Confidence 55 5554444433222111111111 22456778888999999998754
No 150
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=79.84 E-value=58 Score=34.89 Aligned_cols=167 Identities=11% Similarity=0.055 Sum_probs=91.7
Q ss_pred eEEEEEeCCC--CceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 860 SCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 860 s~i~l~d~~~--~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
..+..+|+.+ |+.+.........+ ++. .+ +..++++|-.. ........++.|+.... +.+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~--~~~--~~----~~~iyv~GG~~------~~~~~~~~~~~~d~~~~--~W~~~ 133 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSL--AAC--AA----EGKIYTSGGSE------VGNSALYLFECYDTRTE--SWHTK 133 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSC--EEE--EE----TTEEEEECCBB------TTBSCCCCEEEEETTTT--EEEEE
T ss_pred ceEEEEeCCCCeEEECCCCCccccce--eEE--EE----CCEEEEECCCC------CCCcEeeeEEEEeCCCC--ceEeC
Confidence 3667778766 44443322222122 222 22 23677777642 12233456777776654 55555
Q ss_pred EEEeecCcceEeccccCeEEEEeC-----------CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEE-EeecCC-
Q 000944 938 HKTQVEGIPLALCQFQGRLLAGIG-----------PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE- 1004 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~~g~ll~~~g-----------~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~- 1004 (1213)
.....+-.-.+++.++++|++.-| +.+.+|++...++....... .+..-.++.+.++.|+ +|-...
T Consensus 134 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGL 212 (306)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETT
T ss_pred CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCC
Confidence 433322233455667888877544 34778888887776654433 1223334445566665 443221
Q ss_pred --cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeee
Q 000944 1005 --SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG 1043 (1213)
Q Consensus 1005 --Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~ 1043 (1213)
.-.+..|+.+.++-..++.-+.++...++..+++.-+++
T Consensus 213 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 213 GGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp EEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred CCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 123556888788888888777777766666666544443
No 151
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=78.24 E-value=61 Score=34.67 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC---------CeEEEEe
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG---------PVLRLYD 968 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g---------~~l~i~~ 968 (1213)
..++++|-... ......+..|+...+ +.+.+.....+-.-.+++.++++|++.-| +.+..|+
T Consensus 109 ~~iyv~GG~~~-------~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 109 GLLYAVGGFDG-------STGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp TEEEEEEEECS-------SCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEE
T ss_pred CEEEEEcCCCC-------CccCceEEEEeCCCC--eEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEe
Confidence 36777776421 112345666665544 55555433333333456667888877543 3477888
Q ss_pred cCCceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeee
Q 000944 969 LGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGA 1044 (1213)
Q Consensus 969 ~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~ 1044 (1213)
+...++....... .+..-.++.+.++.|+ +|-... .-.+..|+.+.++-..++.-..+|.-.++..+++.-++.+
T Consensus 180 ~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 180 ATTNEWTYIAEMS-TRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVG 258 (302)
T ss_dssp TTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCCcEEECCCCc-cccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEEC
Confidence 8877776654433 1223334455566665 553321 1236668888888888887777776555555665444443
No 152
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=77.83 E-value=57 Score=35.21 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=79.5
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC----------CeEEEE
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG----------PVLRLY 967 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g----------~~l~i~ 967 (1213)
..++++|-....+. .........++.|+.... +.+.+.....+-.-.+++.++++|++.-| +.+.+|
T Consensus 46 ~~iyv~GG~~~~~~-~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 46 NQVFVAGGLFYNED-NKEDPMSAYFLQFDHLDS--EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp CCEEEEEEEEECSS-CSSSCEEEEEEEEETTTT--EEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred CEEEEEcCcccCCC-CCccccccceEEecCCCC--eEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 45777776532210 122233344666665544 55554332222222456667888877655 247888
Q ss_pred ecCCceeeceeeecCccceEEEEEEeCCEEE-Eeec-CC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeee
Q 000944 968 DLGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDI-QE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMA 1042 (1213)
Q Consensus 968 ~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~-~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l 1042 (1213)
+....++...+... .+..-.+..+.++.|+ +|=. .. .-.+..|+...++-..++.-+.+|...++..+++.-++
T Consensus 123 d~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 201 (315)
T 4asc_A 123 DRLSFKWGESDPLP-YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV 201 (315)
T ss_dssp ETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCCcEeECCCCC-CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE
Confidence 88877776655433 1223334445666664 5533 11 12456688878888888877777776666666655444
Q ss_pred e
Q 000944 1043 G 1043 (1213)
Q Consensus 1043 ~ 1043 (1213)
.
T Consensus 202 ~ 202 (315)
T 4asc_A 202 A 202 (315)
T ss_dssp E
T ss_pred E
Confidence 3
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=76.66 E-value=84 Score=33.54 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=44.7
Q ss_pred EEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC-eEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEE
Q 000944 921 YIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG-RLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIY 998 (1213)
Q Consensus 921 ri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~ 998 (1213)
+|++|+.... ++..+........+++++-- +| +++++ ++.|++|++...+......... ......++..+++++
T Consensus 220 ~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 220 GLLTMDLETG--EMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVW 295 (337)
T ss_dssp EEEEEETTTC--CEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred ceEEEeCCCC--CceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCC-ceeeEEECCCCCEEE
Confidence 5566665443 44433223334455444332 34 55555 7899999998766544322221 112233344567888
Q ss_pred EeecCCcEEEE
Q 000944 999 VGDIQESFHFC 1009 (1213)
Q Consensus 999 vgD~~~Sv~~l 1009 (1213)
++..-..+.++
T Consensus 296 ~~~~~~~i~v~ 306 (337)
T 1pby_B 296 LGGALGDLAAY 306 (337)
T ss_dssp EESBSSEEEEE
T ss_pred EEcCCCcEEEE
Confidence 87554555553
No 154
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.29 E-value=25 Score=41.85 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=35.2
Q ss_pred cEEEEEEEEeCCceEE-EEEE--EeecCcceEeccccCeEEEEeCCeEEEEecCCcee
Q 000944 920 GYIHIYRFVEEGKSLE-LLHK--TQVEGIPLALCQFQGRLLAGIGPVLRLYDLGKKRL 974 (1213)
Q Consensus 920 Gri~v~~i~~~~~kl~-~~~~--~~~~g~V~ai~~~~g~ll~~~g~~l~i~~~~~~~l 974 (1213)
+.+++|++..+ +++ .... ...+..|.+++-.+++|++|..++|++|++.+.++
T Consensus 202 ~tVrlWd~~~~--~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 202 NSVFSMTVSAS--SHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSI 257 (588)
T ss_dssp CCEEEECCCSS--SSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEE
T ss_pred CeEEEEECCCC--ccccceeeecccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeE
Confidence 45788888765 321 1111 12456787776556677777788999999998776
No 155
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=75.27 E-value=78 Score=33.91 Aligned_cols=160 Identities=12% Similarity=0.088 Sum_probs=82.2
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+..+|+. ++....+.... ..+.++. . ..+..+.|||. .|.|+.|+.. + ++... .
T Consensus 118 ~l~~~d~~-g~~~~~~~~~~-~~~~~~~---~---~~~g~l~vgt~------------~~~l~~~d~~--g-~~~~~--~ 172 (330)
T 3hxj_A 118 HLYAINTD-GTEKWRFKTKK-AIYATPI---V---SEDGTIYVGSN------------DNYLYAINPD--G-TEKWR--F 172 (330)
T ss_dssp EEEEECTT-SCEEEEEECSS-CCCSCCE---E---CTTSCEEEECT------------TSEEEEECTT--S-CEEEE--E
T ss_pred EEEEEcCC-CCEEEEEcCCC-ceeeeeE---E---cCCCEEEEEcC------------CCEEEEECCC--C-CEeEE--E
Confidence 56777877 66666555432 2222221 1 11234677773 2566666544 2 22111 1
Q ss_pred ee-cCcceEecc-ccCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEEeC-CEEEEeecCCcEEEEEEeccCCe
Q 000944 941 QV-EGIPLALCQ-FQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYR-DRIYVGDIQESFHFCKYRRDENQ 1017 (1213)
Q Consensus 941 ~~-~g~V~ai~~-~~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~-~~I~vgD~~~Sv~~l~~~~~~~~ 1017 (1213)
.. ...+.++.. -+|.|.++. ..|+.++ .+.+..-..... ...+.++...+ +.|++|+...++.. |+.+...
T Consensus 173 ~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t~~~gl~~--~~~~g~~ 246 (330)
T 3hxj_A 173 KTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGTIYVTSLDGHLYA--INPDGTE 246 (330)
T ss_dssp ECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCS--SCCCSCCEECTTSCEEEEETTTEEEE--ECTTSCE
T ss_pred ecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccC--CcceeceEECCCCeEEEEcCCCeEEE--ECCCCCE
Confidence 22 233455554 478888888 8888888 433322111111 12344555554 48999988777655 4555555
Q ss_pred EEEeeccCCCcceEEEEeec-CCeeeeecCCCcEEEEe
Q 000944 1018 LYIFADDSVPRWLTAAHHID-FDTMAGADKFGNIYFVR 1054 (1213)
Q Consensus 1018 l~~~a~D~~~~~~~~~~~ld-~~~~l~~D~~gnl~il~ 1054 (1213)
+......... ..+ ..++ ++.+.++...|.|+.++
T Consensus 247 ~~~~~~~~~~--~~~-~~~~~~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 247 KWRFKTGKRI--ESS-PVIGNTDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEEECSSCC--CSC-CEECTTSCEEEECTTCEEEEEC
T ss_pred eEEeeCCCCc--ccc-ceEcCCCeEEEecCCCCEEEEC
Confidence 5444332211 111 1234 45666677777777764
No 156
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.20 E-value=73 Score=34.03 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=77.9
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC-------CeEEEEecC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG-------PVLRLYDLG 970 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g-------~~l~i~~~~ 970 (1213)
..++++|-... ......++.|+.... +.+.+.....+-.-.+++.++++|++.-| +.+.+|++.
T Consensus 62 ~~lyv~GG~~~-------~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 132 (302)
T 2xn4_A 62 GLVFAVGGFNG-------SLRVRTVDSYDPVKD--QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIK 132 (302)
T ss_dssp TEEEEESCBCS-------SSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETT
T ss_pred CEEEEEeCcCC-------CccccceEEECCCCC--ceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCC
Confidence 46777776421 122345667776554 55555443333233556667888877544 357788888
Q ss_pred CceeeceeeecCccceEEEEEEeCCEEEE-ee-------cCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeee
Q 000944 971 KKRLLRKCENKLFPNTIVSINTYRDRIYV-GD-------IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMA 1042 (1213)
Q Consensus 971 ~~~l~~~~~~~~~~~~i~~l~~~~~~I~v-gD-------~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l 1042 (1213)
..++...+... .+-.-.++.+.++.|++ |- .... +..|+.+.++-..++.-+.+|...++..+++.-++
T Consensus 133 ~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 209 (302)
T 2xn4_A 133 SNEWFHVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLST--VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYA 209 (302)
T ss_dssp TTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCC--EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred CCeEeecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccE--EEEEeCCCCcEEECCCCccccccccEEEECCEEEE
Confidence 77776654443 13233344556776654 42 2333 55678778888888776777776666666654444
Q ss_pred e
Q 000944 1043 G 1043 (1213)
Q Consensus 1043 ~ 1043 (1213)
.
T Consensus 210 ~ 210 (302)
T 2xn4_A 210 V 210 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 157
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=74.67 E-value=43 Score=35.83 Aligned_cols=159 Identities=9% Similarity=0.093 Sum_probs=85.0
Q ss_pred eEEEEEeCCC--CceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 860 SCIRVLDPRS--ANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 860 s~i~l~d~~~--~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
..+..+|+.+ |+.+.. ++..-.-.++. .+ + ..++++|-.. .......++.|+.... +.+.+
T Consensus 128 ~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~--~~---~-~~iyv~GG~~-------~~~~~~~~~~~d~~~~--~W~~~ 190 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGD--MQTAREGAGLV--VA---S-GVIYCLGGYD-------GLNILNSVEKYDPHTG--HWTNV 190 (301)
T ss_dssp CEEEEEETTTTEEEEEEE--CSSCCBSCEEE--EE---T-TEEEEECCBC-------SSCBCCCEEEEETTTT--EEEEE
T ss_pred ceEEEEcCCCCeEEECCC--CCCCcccceEE--EE---C-CEEEEECCCC-------CCcccceEEEEeCCCC--cEEeC
Confidence 3677788765 444433 22111111221 22 2 3677777532 1124455777777655 55555
Q ss_pred EEEeecCcceEeccccCeEEEEeC-------CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cE
Q 000944 938 HKTQVEGIPLALCQFQGRLLAGIG-------PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SF 1006 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~~g~ll~~~g-------~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv 1006 (1213)
.....+..-.+++.++++|++.-| +.+.+|++...++....... .+..-.++.+.++.|+ +|-... .-
T Consensus 191 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 269 (301)
T 2vpj_A 191 TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGRLYAIAGYDGNSLLS 269 (301)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBEE
T ss_pred CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCEEEEEcCcCCCcccc
Confidence 433222233456667888877544 36888999887776654333 1222234445566654 554322 13
Q ss_pred EEEEEeccCCeEEEeeccCCCcceEEEEee
Q 000944 1007 HFCKYRRDENQLYIFADDSVPRWLTAAHHI 1036 (1213)
Q Consensus 1007 ~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l 1036 (1213)
.+..|+.+.++-..+..-+.+|.-.++..+
T Consensus 270 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 299 (301)
T 2vpj_A 270 SIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299 (301)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEESCEEEEE
T ss_pred cEEEEcCCCCeEEEcCCCCcccccceEEEe
Confidence 566788777777777655555544444333
No 158
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.19 E-value=51 Score=35.60 Aligned_cols=138 Identities=10% Similarity=-0.009 Sum_probs=81.3
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeCC--------eEEEEec
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGP--------VLRLYDL 969 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g~--------~l~i~~~ 969 (1213)
..++++|-.... +.......++.|+.... +.+.+.....+-.-.+.+.++++|++.-|. .+.+|+.
T Consensus 99 ~~lyv~GG~~~~----~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 99 NSIYVVGGREIK----DGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp TEEEEECCEESS----TTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred CEEEEEeCCcCC----CCCcccceEEEECCCCC--cEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 367777764321 12334556777776654 555554322222234566688888775543 6888998
Q ss_pred CCceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeee
Q 000944 970 GKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMA 1042 (1213)
Q Consensus 970 ~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l 1042 (1213)
...++...+... .+-.-.+..+.++.|+ +|-... .-.+..|+.+.++-..++.-+.+|...++..+++.-++
T Consensus 173 ~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v 248 (315)
T 4asc_A 173 KKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYA 248 (315)
T ss_dssp TTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred CCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEE
Confidence 887776655433 1223334445566654 554332 12466788888888888877777776666666554443
No 159
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=73.86 E-value=95 Score=32.85 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=80.2
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.|+.+|+++++++.++ +++.--...+. +. + +..++ .|-. .+++++|+.. .++++.+.
T Consensus 76 ~v~~iD~~Tgkv~~~~-l~~~~FgeGit---~~--g-~~Ly~-ltw~-----------~~~v~V~D~~----Tl~~~~ti 132 (268)
T 3nok_A 76 TLRQLSLESAQPVWME-RLGNIFAEGLA---SD--G-ERLYQ-LTWT-----------EGLLFTWSGM----PPQRERTT 132 (268)
T ss_dssp EEEECCSSCSSCSEEE-ECTTCCEEEEE---EC--S-SCEEE-EESS-----------SCEEEEEETT----TTEEEEEE
T ss_pred EEEEEECCCCcEEeEE-CCCCcceeEEE---Ee--C-CEEEE-EEcc-----------CCEEEEEECC----cCcEEEEE
Confidence 3888899999998888 76542222222 21 2 23333 3431 4667777654 46666666
Q ss_pred eecCcceEeccccCeEEEEeCC-eEEEEecCCceeeceeee--cCcc-ceEEEEEEeCCEEEEeecCCcEEEEEEeccCC
Q 000944 941 QVEGIPLALCQFQGRLLAGIGP-VLRLYDLGKKRLLRKCEN--KLFP-NTIVSINTYRDRIYVGDIQESFHFCKYRRDEN 1016 (1213)
Q Consensus 941 ~~~g~V~ai~~~~g~ll~~~g~-~l~i~~~~~~~l~~~~~~--~~~~-~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~ 1016 (1213)
.+.+.-.+++.-+++|+++-|. +|++++....+.++.-.. ...+ ..+..|...+.+|++..-... .+++.++...
T Consensus 133 ~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~-~I~vIDp~TG 211 (268)
T 3nok_A 133 RYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS-DVLEIDPATG 211 (268)
T ss_dssp ECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS-EEEEECTTTC
T ss_pred eCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC-eEEEEeCCCC
Confidence 6666667888878889998864 788888765444332111 1111 134566777888888875544 5666666544
Q ss_pred e
Q 000944 1017 Q 1017 (1213)
Q Consensus 1017 ~ 1017 (1213)
+
T Consensus 212 ~ 212 (268)
T 3nok_A 212 T 212 (268)
T ss_dssp B
T ss_pred c
Confidence 4
No 160
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=73.46 E-value=1.5e+02 Score=34.88 Aligned_cols=156 Identities=10% Similarity=0.048 Sum_probs=85.4
Q ss_pred eEEEEEeeecCcc-------CCCCCCcccEEEEEEEEeCCceEEEEEEE-eecCcceEecccc-------CeEEEEeC--
Q 000944 899 TLLAVGTAKGLQF-------WPKRNIVAGYIHIYRFVEEGKSLELLHKT-QVEGIPLALCQFQ-------GRLLAGIG-- 961 (1213)
Q Consensus 899 ~~i~VGT~~~~~~-------~~e~~~~~Gri~v~~i~~~~~kl~~~~~~-~~~g~V~ai~~~~-------g~ll~~~g-- 961 (1213)
+|++||+...... .--....-|.|.+|++..+.......... ...|.|.+++-.. +.++++.+
T Consensus 155 ~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D 234 (524)
T 2j04_B 155 QYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE 234 (524)
T ss_dssp EEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT
T ss_pred eEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC
Confidence 8999998642100 00012356789999987642222222211 2357888876432 34555433
Q ss_pred CeEEEEecCCceee---------ceeeecCccceEEEEEE-eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceE
Q 000944 962 PVLRLYDLGKKRLL---------RKCENKLFPNTIVSINT-YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLT 1031 (1213)
Q Consensus 962 ~~l~i~~~~~~~l~---------~~~~~~~~~~~i~~l~~-~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~ 1031 (1213)
+.|.+|++...+.. +...+......++++.. .++.|+.|..-..|.++..+........+. .+...++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~--~H~~~V~ 312 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQ--VHDSYIL 312 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEE--CSSSCEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEee--cccccEE
Confidence 48999999754211 11122222346777775 357899998888888865543211111111 2345577
Q ss_pred EEE--eecCC--eeeeecCCCcEEEEecC
Q 000944 1032 AAH--HIDFD--TMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1032 ~~~--~ld~~--~~l~~D~~gnl~il~~~ 1056 (1213)
++. +-.++ .++.+..+|.+.+++..
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 763 33333 45778889999998864
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=72.73 E-value=1.2e+02 Score=33.40 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=82.0
Q ss_pred EEEEEeCC-CCce--EEEEEcCC-CceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE
Q 000944 861 CIRVLDPR-SANT--TCLLELQD-NEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL 936 (1213)
Q Consensus 861 ~i~l~d~~-~~~~--~~~~~~~~-~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~ 936 (1213)
.+.+++.. +++. +..+.++. +..+.++. |.. + .++++++.. ..|++.+|+++....+++.
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~---~sp-d-g~~l~v~~~-----------~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVA---MHP-T-GNYLYALME-----------AGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEE---ECT-T-SSEEEEEET-----------TTTEEEEEEECTTTCCEEE
T ss_pred EEEEEEECCCCCEEEeeeEecCCCCCCCCEeE---ECC-C-CCEEEEEEC-----------CCCeEEEEEEeCCCCcEEE
Confidence 46666655 4543 24444443 45555443 332 2 245555432 1368889988753124432
Q ss_pred ----EEEEe--ecC---------cceEec-c-ccC-eEEEEe-C-C-----eEEEEecC-Cceeeceee-ecCc--cceE
Q 000944 937 ----LHKTQ--VEG---------IPLALC-Q-FQG-RLLAGI-G-P-----VLRLYDLG-KKRLLRKCE-NKLF--PNTI 987 (1213)
Q Consensus 937 ----~~~~~--~~g---------~V~ai~-~-~~g-~ll~~~-g-~-----~l~i~~~~-~~~l~~~~~-~~~~--~~~i 987 (1213)
+.... ..| .+.+++ - =+| +|+++. + + .|.+|+++ +.++..... .... .-..
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~ 311 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS 311 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTC
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccc
Confidence 11111 112 356665 2 234 555543 3 3 79999996 455543221 1100 1123
Q ss_pred EEEEE---eCCEEEEeecC-CcEEEEEEeccCCeEEEeec--cCCCcceEEEEeec
Q 000944 988 VSINT---YRDRIYVGDIQ-ESFHFCKYRRDENQLYIFAD--DSVPRWLTAAHHID 1037 (1213)
Q Consensus 988 ~~l~~---~~~~I~vgD~~-~Sv~~l~~~~~~~~l~~~a~--D~~~~~~~~~~~ld 1037 (1213)
..++. .++++++++.. ..+.+++++.+ .|..+++ -..|.++..+.++|
T Consensus 312 ~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~--~l~~~~~~~~~~p~~~~~~~~~~ 365 (365)
T 1jof_A 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE--FLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETT--EEEEEEEEECCSTTEEEEEEEEC
T ss_pred ceecCCCcCCCEEEEEEcCCCeEEEEEEchh--hCceeeEEEcCCCcceeeeEecC
Confidence 45566 58999999875 67888887754 6666542 23455555555553
No 162
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=72.65 E-value=51 Score=35.07 Aligned_cols=130 Identities=8% Similarity=-0.062 Sum_probs=66.5
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecC--cceEeccc-cCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEE-eC
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEG--IPLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINT-YR 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g--~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~-~~ 994 (1213)
.|+|++|+...+ ++ +.+....+ .+.++... +|+++++.++.|+.|+.+ .+++....... ...+.+... .+
T Consensus 14 ~~~v~~~d~~tG--~~--~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~~-G~~~W~~~~~~-~~~~~~~~~~~d 87 (276)
T 3no2_A 14 WNKIAIINKDTK--EI--VWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRD-GRELWNIAAPA-GCEMQTARILPD 87 (276)
T ss_dssp CSEEEEEETTTT--EE--EEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECTT-SCEEEEEECCT-TCEEEEEEECTT
T ss_pred CCEEEEEECCCC--eE--EEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECCC-CCEEEEEcCCC-CccccccEECCC
Confidence 478888874333 32 23333333 45555443 788888878889989884 44433322210 123344443 24
Q ss_pred CEEEEeecCCcEEEEEEeccCCeEEEeeccCC---C-cceEEEEeecCCeeeeecC-CCcEEEEe
Q 000944 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSV---P-RWLTAAHHIDFDTMAGADK-FGNIYFVR 1054 (1213)
Q Consensus 995 ~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~---~-~~~~~~~~ld~~~~l~~D~-~gnl~il~ 1054 (1213)
..+++++.-..-.++.++.+.+.+..+..+.. + .+...+.+..++.+++++. ++.+..|+
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 45566665523456677776665555442211 1 1222223444455555554 45555554
No 163
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=72.01 E-value=1.1e+02 Score=37.99 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=58.7
Q ss_pred ceEeccc-cCeEEEEeCCeEEEEecCCceeeceeeecCcc-ce-EEEEEE-eCCEEEEeecCCcEEEEEEeccCCeEEEe
Q 000944 946 PLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFP-NT-IVSINT-YRDRIYVGDIQESFHFCKYRRDENQLYIF 1021 (1213)
Q Consensus 946 V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~-~~-i~~l~~-~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~ 1021 (1213)
|.+|+.- +|.|.++..+.|+.|+....++..... . .+ .. +.+|.. .++.|.+|...+++ ++|+...+++..+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~~~-~-~~~~~~i~~i~~d~~g~lwigt~~~Gl--~~~~~~~~~~~~~ 208 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDDSF-S-TAMHKTIASTLYRQGDQIYIGTSTDGL--YTYSITQKTFEKV 208 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECSSS-C-HHHHTCCEEEEEEETTEEEEEESSSCE--EEEETTTCCEEEC
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEeccC-C-CCCCcceEEEEECCCCCEEEEECCCCE--EEEeCCCCeEEEe
Confidence 7777665 688999998889999887665543211 0 11 12 556654 47889999887785 4566656666554
Q ss_pred eccCCCcceEEEEeecCCeee-eecCCCcEEEEe
Q 000944 1022 ADDSVPRWLTAAHHIDFDTMA-GADKFGNIYFVR 1054 (1213)
Q Consensus 1022 a~D~~~~~~~~~~~ld~~~~l-~~D~~gnl~il~ 1054 (1213)
........+.++..-.++.+. +++..| |+.+.
T Consensus 209 ~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~ 241 (795)
T 4a2l_A 209 IPILGTKQIQAILQQSPTRIWVATEGAG-LFLIN 241 (795)
T ss_dssp C----CCCEEEEEEEETTEEEEEEBSSC-EEEEE
T ss_pred cCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEe
Confidence 322222334443322334443 333334 55544
No 164
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=71.46 E-value=45 Score=35.95 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC-------CeEEEEecC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG-------PVLRLYDLG 970 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g-------~~l~i~~~~ 970 (1213)
..++++|-..... ........++.|+.... +.+.+.....+-.-.+++.++++|++.-| +.+.+|++.
T Consensus 71 ~~lyv~GG~~~~~---~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 71 GLLYAVGGRNNSP---DGNTDSSALDCYNPMTN--QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TEEEEECCEEEET---TEEEECCCEEEEETTTT--EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETT
T ss_pred CEEEEECCCcCCC---CCCeecceEEEECCCCC--eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCC
Confidence 4677777653111 11122345666766544 55555433322233556667888877644 467888888
Q ss_pred CceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeee
Q 000944 971 KKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG 1043 (1213)
Q Consensus 971 ~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~ 1043 (1213)
..++...+... .+..-.+..+.++.|+ +|-... .-.+..|+...++-..++.-+.+|...++..+++.-++.
T Consensus 146 ~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 146 RDEWHLVAPML-TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp TTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CCeEeECCCCC-ccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence 77776554433 1222334444566665 443211 223566887788888887666677666665565444443
No 165
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=68.78 E-value=1.2e+02 Score=31.73 Aligned_cols=127 Identities=9% Similarity=-0.053 Sum_probs=68.5
Q ss_pred cEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-CC
Q 000944 920 GYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-RD 995 (1213)
Q Consensus 920 Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~~ 995 (1213)
|+|+.|+. ++ +++..........+.+|+.- +|+|.++. ++.|..|+. +.++.... .......+.+|... ++
T Consensus 162 ~~i~~~~~--~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 162 NAIGRITE--SG-DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGI 236 (299)
T ss_dssp TEEEEECT--TC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTT
T ss_pred CEEEEEcC--CC-cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCC
Confidence 56666655 22 34332111112345566554 47787776 568888888 44443221 11112345666654 34
Q ss_pred EEEEeecC-CcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEec
Q 000944 996 RIYVGDIQ-ESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRL 1055 (1213)
Q Consensus 996 ~I~vgD~~-~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~ 1055 (1213)
.+++++.. .++ .+|+. ..++..+.-......+.++.+ .++.+.+++..+.+..++.
T Consensus 237 ~l~v~~~~~~~i--~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~ 293 (299)
T 2z2n_A 237 DLWFTEWGANKI--GRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTL 293 (299)
T ss_dssp CEEEEETTTTEE--EEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEE
T ss_pred CEEEeccCCceE--EEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEc
Confidence 68999855 444 44665 345655533222344556555 6667766766677777654
No 166
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=68.56 E-value=1.2e+02 Score=31.68 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=74.6
Q ss_pred EEEEEEEeecCc--ceEeccccCeEEEEeCC----eEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEE
Q 000944 934 LELLHKTQVEGI--PLALCQFQGRLLAGIGP----VLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFH 1007 (1213)
Q Consensus 934 l~~~~~~~~~g~--V~ai~~~~g~ll~~~g~----~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~ 1007 (1213)
.+++.+..++.. ...+.-.+++|..+.|. .|..+++...+.++...... ..+...+...++.|++.+-..+.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~- 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHE- 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-
T ss_pred eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCE-
Confidence 444444444333 34565557899999987 79999999888776655543 34667788889999999988775
Q ss_pred EEEEeccCCe-EEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEe
Q 000944 1008 FCKYRRDENQ-LYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVR 1054 (1213)
Q Consensus 1008 ~l~~~~~~~~-l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~ 1054 (1213)
++.|+.+.-+ +..+.-.... |..+ -|...++++|..+.|++++
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wglt---~dg~~L~vSdgs~~l~~iD 130 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WALT---SDDSHLYMSDGTAVIRKLD 130 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEEE---ECSSCEEEECSSSEEEEEC
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEEe---eCCCEEEEECCCCeEEEEe
Confidence 4457754333 3333333222 3332 3556788899888887764
No 167
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=68.55 E-value=1.6e+02 Score=33.19 Aligned_cols=170 Identities=6% Similarity=-0.032 Sum_probs=89.7
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEE
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKT 940 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~ 940 (1213)
.+.++|..+++......+. ..+.++ .+.. + .+++++..... ...+|+++++... +++.+.
T Consensus 204 ~i~~~d~~tg~~~~l~~~~--~~~~~~---~~sp-d-g~~la~~~~~~---------g~~~i~~~d~~~~--~~~~l~-- 263 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVASFP--RHNGAP---AFSP-D-GSKLAFALSKT---------GSLNLYVMDLASG--QIRQVT-- 263 (415)
T ss_dssp EEEEEETTTCCEEEEECCS--SCEEEE---EECT-T-SSEEEEEECTT---------SSCEEEEEETTTC--CEEECC--
T ss_pred EEEEEECCCCcEEEeecCC--CcccCE---EEcC-C-CCEEEEEEecC---------CCceEEEEECCCC--CEEeCc--
Confidence 6888888877664322222 233332 3332 2 34555433211 1356888876543 443332
Q ss_pred eecCcceEeccc-cC-eEEEEeCC----eEEEEecCCceeeceeeecCccceEEEEE--EeCCEEEEeecCCc-EEEEEE
Q 000944 941 QVEGIPLALCQF-QG-RLLAGIGP----VLRLYDLGKKRLLRKCENKLFPNTIVSIN--TYRDRIYVGDIQES-FHFCKY 1011 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g-~ll~~~g~----~l~i~~~~~~~l~~~~~~~~~~~~i~~l~--~~~~~I~vgD~~~S-v~~l~~ 1011 (1213)
...+.+.+++-- +| +|+++... +|++|+....+....... ...+.++. ..+++|+++....+ ..+..|
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence 234666666533 34 46655542 688888876554332211 23444444 45788887776543 566667
Q ss_pred eccCCeEEEeeccCCCcceEEEEeecCC-eeeeecC-CC--cEEEEecC
Q 000944 1012 RRDENQLYIFADDSVPRWLTAAHHIDFD-TMAGADK-FG--NIYFVRLP 1056 (1213)
Q Consensus 1012 ~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D~-~g--nl~il~~~ 1056 (1213)
+.+..++..+.... .+.+..+-.++ .++.+.. .+ .|++++.+
T Consensus 341 d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 341 DLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp ETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 77666666555432 55666654333 4444433 33 56666654
No 168
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=68.53 E-value=1.6e+02 Score=33.13 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=26.8
Q ss_pred EEEEEccCCCeeEEEEEeCCCccceeeecCCCc-eEEEE
Q 000944 758 RVFTIERLGETFNETALPLRYTPRRFVLQPKKK-LMVII 795 (1213)
Q Consensus 758 ~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~-~~~v~ 795 (1213)
.+..++.- .+-.+++|+++..|..|+++++.+ .+++.
T Consensus 312 ~V~viD~~-t~kv~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 312 FVVVLDAK-TGERLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp EEEEEETT-TCCEEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred EEEEEECC-CCeEEEEEECCCCcceEEECCCCCeEEEEE
Confidence 34445542 345689999999999999999887 44544
No 169
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=68.25 E-value=1.2e+02 Score=31.87 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=73.2
Q ss_pred EEEEEEEeecCcc--eEeccccCeEEEEeCC----eEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEE
Q 000944 934 LELLHKTQVEGIP--LALCQFQGRLLAGIGP----VLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFH 1007 (1213)
Q Consensus 934 l~~~~~~~~~g~V--~ai~~~~g~ll~~~g~----~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~ 1007 (1213)
.+++.+....... ..+.--++.|..+.|. .|..+++...+.++....+. ..+...|...++.|++.+-..+.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~- 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL- 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE-
Confidence 4444444443333 4454447889998886 79999999887766655552 34667788899999999988775
Q ss_pred EEEEeccC-CeEEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEe
Q 000944 1008 FCKYRRDE-NQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVR 1054 (1213)
Q Consensus 1008 ~l~~~~~~-~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~ 1054 (1213)
++.|+.+. ..+..+.-.... |..+ -|...++++|..+.|++++
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG-~glt---~dg~~L~~SdGs~~i~~iD 152 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEG-WGLT---HNDQYLIMSDGTPVLRFLD 152 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCC-CCEE---ECSSCEEECCSSSEEEEEC
T ss_pred EEEEECccCcEEEEEECCCCc-eEEe---cCCCEEEEECCCCeEEEEc
Confidence 44577543 333444433322 3332 3556788888776777653
No 170
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=66.78 E-value=1.8e+02 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.2
Q ss_pred eEEEEeeecCCCceeeeEEEEEEe-CCcEEEEEeCCCCceeEeE
Q 000944 584 VACLDIASVPEGRKRSRFLAVGSY-DNTIRILSLDPDDCMQILS 626 (1213)
Q Consensus 584 is~i~i~~~~~~~~~~~~l~v~~~-~~~i~i~sl~p~~~l~~~~ 626 (1213)
++.|.+.+ ..++|.|+.| .++|.+|.+.....++.+.
T Consensus 323 pa~I~lS~------DGrfLYVSnrg~d~VavfdV~d~~~~~lv~ 360 (462)
T 2ece_A 323 VTDIDISL------DDKFLYLSLWGIGEVRQYDISNPFKPVLTG 360 (462)
T ss_dssp CCCEEECT------TSCEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred eeEEEECC------CCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 45566643 4689999999 7899999984222344443
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=66.67 E-value=2.1e+02 Score=33.94 Aligned_cols=174 Identities=8% Similarity=-0.005 Sum_probs=86.3
Q ss_pred eEEEEEEe-CCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCC
Q 000944 600 RFLAVGSY-DNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVT 678 (1213)
Q Consensus 600 ~~l~v~~~-~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~ 678 (1213)
..++|... +++|.+++.+.. +.+..-.....|+.+.+. ....+|+++.++|.+..+.+...+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~---~v~~~i~~g~~p~~v~~S--------------pDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTY---EIKTVLDTGYAVHISRLS--------------ASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTC---CEEEEEECSSCEEEEEEC--------------TTSCEEEEEETTSEEEEEETTSSS
T ss_pred ceEEEEeCCCCeEEEEECCCC---eEEEEEeCCCCccceEEC--------------CCCCEEEEEcCCCeEEEEECCCCC
Confidence 34555554 789999987432 222222333345544321 234578888899988776653123
Q ss_pred CcccccceeeecCCCCeEEEEEEC-----CeeEEEEecCcc--EEEEEe--CCeEEEEecCccccc--------eeeccc
Q 000944 679 GQLSDSRSRFLGLRPPKLFSVVVG-----GRAAMLCLSSRP--WLGYIH--RGRFLLTPLSYETLE--------YAASFS 741 (1213)
Q Consensus 679 ~~l~~~~~~~lG~~pv~l~~~~~~-----~~~~v~~~g~~p--~~i~~~--~~~~~~~~~~~~~v~--------~~~~f~ 741 (1213)
+++ ......|..|..+. ++ +.+.+++++..+ ..++.. ...+...++....+. .++.+.
T Consensus 230 ~~~--v~~i~~G~~P~~ia---~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 230 PTT--VAEIKIGSEARSIE---TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp CCE--EEEEECCSEEEEEE---ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred CcE--eEEEecCCCCceeE---EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 322 22334565554332 22 233444444332 223321 122233333211110 011111
Q ss_pred cCCCCceEEEEe--CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEE
Q 000944 742 SDQCVEGVVSVA--GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIE 796 (1213)
Q Consensus 742 ~~~~~~~~i~~~--~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~ 796 (1213)
.......+++.. .+.+.+...... ..+.+.+|+.+.-|+-+.++|..+.++|++
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~-~~~~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDL-NNLKTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCC-ccceeeeeeccccccCceECCCCCEEEEEe
Confidence 111111222222 356665555543 357788999999999999999888777775
No 172
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=66.56 E-value=72 Score=34.02 Aligned_cols=130 Identities=9% Similarity=0.032 Sum_probs=76.2
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEeCCeEEEEecCCceeeceeeec--CccceEEEEEEe-C
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKCENK--LFPNTIVSINTY-R 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~~~~--~~~~~i~~l~~~-~ 994 (1213)
.++|+.|+.... +.+. ....+.|.+++.- +|+|+++.+..|++|+++..++...+... .-...+..+.+. +
T Consensus 34 ~~~i~~~d~~~~--~~~~---~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d 108 (297)
T 3g4e_A 34 AKKVCRWDSFTK--QVQR---VTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA 108 (297)
T ss_dssp TTEEEEEETTTC--CEEE---EECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT
T ss_pred CCEEEEEECCCC--cEEE---EeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC
Confidence 467766665432 3332 2356778887765 57899999999999999876665443321 111235566554 4
Q ss_pred CEEEEeecC----------CcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecC-CCcEEEEecC
Q 000944 995 DRIYVGDIQ----------ESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADK-FGNIYFVRLP 1056 (1213)
Q Consensus 995 ~~I~vgD~~----------~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~-~gnl~il~~~ 1056 (1213)
..+++||.. ..-.+++++.+ .++..+..+.. ....+.+- |...+.++|. .+.|+.|.++
T Consensus 109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~--~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 109 GRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVD--ISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp SCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEES--BEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccc--cccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 568888864 34578888765 34444433321 12222332 3334556665 5678888875
No 173
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=66.12 E-value=1.5e+02 Score=31.89 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=76.9
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC--------CeEEEEec
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG--------PVLRLYDL 969 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g--------~~l~i~~~ 969 (1213)
..++++|-... ........+..|+.... +.+.+.....+-.-.+++.++++|++.-| +.+.+|++
T Consensus 110 ~~iyv~GG~~~-----~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 110 DKIYVVAGKDL-----QTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp TEEEEEEEEBT-----TTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred CEEEEEcCccC-----CCCcccceEEEEeCCCC--CEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence 36777776532 12233455667766544 55555322211112344557888866444 24888998
Q ss_pred CCceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeee
Q 000944 970 GKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG 1043 (1213)
Q Consensus 970 ~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~ 1043 (1213)
...++...+... .+-.-.++.+.++.|+ +|-... .-.+..|+.+.++-..++.-+.+|...++..+++.-++.
T Consensus 183 ~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 183 KKGDWKDLAPMK-TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259 (318)
T ss_dssp TTTEEEEECCCS-SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CCCEEEECCCCC-CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEE
Confidence 887776654433 1222234445566654 553222 124556888888888888777777665555566544443
No 174
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=65.55 E-value=68 Score=34.48 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=76.4
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC-------CeEEEEecC
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG-------PVLRLYDLG 970 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g-------~~l~i~~~~ 970 (1213)
..++++|-... ......+..|+...+ +.+.+......-.-.+.+.++++|++.-| +.+..|++.
T Consensus 122 ~~iyv~GG~~~-------~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 122 GHIYAVGGSHG-------CIHHNSVERYEPERD--EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp TEEEEECCEET-------TEECCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CEEEEEcCCCC-------CcccccEEEECCCCC--eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCC
Confidence 36777775421 112334666766554 55554432222222455666888877544 358889988
Q ss_pred CceeeceeeecCccceEEEEEEeCCEEE-EeecCC---cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeee
Q 000944 971 KKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE---SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAG 1043 (1213)
Q Consensus 971 ~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~---Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~ 1043 (1213)
..++....... .+..-.++.+.++.|+ +|-... .-.+..|+.+.++-..++.-+.+|...++..+++.-++.
T Consensus 193 ~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 268 (308)
T 1zgk_A 193 RNEWRMITAMN-TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL 268 (308)
T ss_dssp TTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred CCeEeeCCCCC-CccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEE
Confidence 77776554333 1222234445566665 553321 234566888888888888666777666666666544443
No 175
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.43 E-value=75 Score=34.29 Aligned_cols=141 Identities=12% Similarity=0.033 Sum_probs=75.6
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeC---------CeEEEEe
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIG---------PVLRLYD 968 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g---------~~l~i~~ 968 (1213)
..++++|-...... +........++.|+.... +.+.+.....+-.-.+++.++++|++.-| +.+.+|+
T Consensus 57 ~~lyv~GG~~~~~~-~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 57 NQVYVVGGLYVDEE-NKDQPLQSYFFQLDNVSS--EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp SCEEEEESSCC--------CCCBEEEEEETTTT--EEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred CEEEEECCcccCcc-ccCCCccccEEEEeCCCC--cEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe
Confidence 46778886422110 011122334666665544 55554332222223566677888876443 2477888
Q ss_pred cCCceeeceeeecCccceEEEEEEeCCEEE-EeecC----CcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeee
Q 000944 969 LGKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQ----ESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMA 1042 (1213)
Q Consensus 969 ~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~----~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l 1042 (1213)
....++...+... .+..-.++.+.++.|+ +|-.. ..-.+..|+...++-..++.-+.+|...++..+++.-++
T Consensus 134 ~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 211 (318)
T 2woz_A 134 PVAAKWSEVKNLP-IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVI 211 (318)
T ss_dssp TTTTEEEEECCCS-SCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred CCCCCEeECCCCC-CcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEE
Confidence 8877776654333 1222233444666664 55321 112356688888888888776777776666556654443
No 176
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=62.67 E-value=1e+02 Score=32.89 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=78.2
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeCC--------eEEEEec
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGP--------VLRLYDL 969 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g~--------~l~i~~~ 969 (1213)
..++++|-.. ......++.|+.... +.+.+.....+-.-.+++.++++|++.-|. .+.+|+.
T Consensus 56 ~~lyv~GG~~--------~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 56 NVVYILGGSQ--------LFPIKRMDCYNVVKD--SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp TEEEEECCBS--------SSBCCEEEEEETTTT--EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEET
T ss_pred CEEEEEeCCC--------CCCcceEEEEeCCCC--eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeC
Confidence 3577777542 223456777776654 555554433333335566778888775542 4788888
Q ss_pred CCceeeceeeecCccceEEEEEEeCCEEE-EeecCC-------cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCee
Q 000944 970 GKKRLLRKCENKLFPNTIVSINTYRDRIY-VGDIQE-------SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTM 1041 (1213)
Q Consensus 970 ~~~~l~~~~~~~~~~~~i~~l~~~~~~I~-vgD~~~-------Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~ 1041 (1213)
...++...+... .+..-.++.+.++.|+ +|-... .-.+..|+.+.++-..++.-+.+|...++..+++.-+
T Consensus 126 ~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~ 204 (306)
T 3ii7_A 126 RTESWHTKPSML-TQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIF 204 (306)
T ss_dssp TTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred CCCceEeCCCCc-CCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEE
Confidence 877776654443 1223334445566665 453211 2235567887888888876666776656555654444
Q ss_pred ee
Q 000944 1042 AG 1043 (1213)
Q Consensus 1042 l~ 1043 (1213)
+.
T Consensus 205 v~ 206 (306)
T 3ii7_A 205 AV 206 (306)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 177
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=62.63 E-value=1.9e+02 Score=32.05 Aligned_cols=105 Identities=19% Similarity=0.111 Sum_probs=60.1
Q ss_pred EEeCCEEEEEEEccCCCeEEee-eecc---CcceEEEEeeecCC--CceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEe
Q 000944 555 ALSGGELIYFEVDMTGQLLEVE-KHEM---SGDVACLDIASVPE--GRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQ 628 (1213)
Q Consensus 555 ~~s~~~l~~l~~~~~~~l~~~~-~~~l---~~~is~i~i~~~~~--~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~ 628 (1213)
+..|+++.++.... +...... ...+ ...|.++++.+... ......+|+.|.+|++++||++.....+ ....
T Consensus 107 ~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~--~~~~ 183 (393)
T 4gq1_A 107 VCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI--LAGY 183 (393)
T ss_dssp EETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE--EEEE
T ss_pred EeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee--eeec
Confidence 33466777766553 2222111 1122 35689999876321 1235689999999999999999533222 1112
Q ss_pred ecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEe
Q 000944 629 SVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVD 675 (1213)
Q Consensus 629 ~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~ 675 (1213)
.......++. +.. .+..+|+.|..||.+..|.+.
T Consensus 184 ~~~~~v~~v~---~~p----------~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 184 PLSSPGISVQ---FRP----------SNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp ECSSCEEEEE---EET----------TEEEEEEEEETTSEEEEEETT
T ss_pred CCCCCcEEEE---ECC----------CCCceEEecCCCCEEEEEECC
Confidence 2222333433 321 134578899999999888764
No 178
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=60.16 E-value=35 Score=39.27 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=45.6
Q ss_pred CcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEE
Q 000944 581 SGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL 660 (1213)
Q Consensus 581 ~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~L 660 (1213)
...|.+++..+. ...+++.|.+||+|.+|+++.. ........-...+.++ .+. ....+|
T Consensus 149 ~~~V~~v~~~p~-----~~~~las~s~Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v---~ws-----------pdg~~l 207 (434)
T 2oit_A 149 GGMVIDMKWNPT-----VPSMVAVCLADGSIAVLQVTET--VKVCATLPSTVAVTSV---CWS-----------PKGKQL 207 (434)
T ss_dssp GGSEEEEEECSS-----CTTEEEEEETTSCEEEEEESSS--EEEEEEECGGGCEEEE---EEC-----------TTSSCE
T ss_pred CCceEEEEECCC-----CCCEEEEEECCCeEEEEEcCCC--cceeeccCCCCceeEE---EEc-----------CCCCEE
Confidence 457899988652 2568899999999999999532 1111111111112222 332 134578
Q ss_pred EEEeeCCeEEEEEEe
Q 000944 661 NAGLQNGVLFRTVVD 675 (1213)
Q Consensus 661 ligl~~G~l~~~~~~ 675 (1213)
++|..||.+..|...
T Consensus 208 asgs~dg~v~iwd~~ 222 (434)
T 2oit_A 208 AVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEETTSCEEEECTT
T ss_pred EEEcCCCcEEEEccC
Confidence 899999999877653
No 179
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=50.94 E-value=2.3e+02 Score=29.33 Aligned_cols=129 Identities=9% Similarity=-0.035 Sum_probs=61.7
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-C
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-R 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~ 994 (1213)
.|+|+.|+.. + +++..........+++++.- +|+|+++. +..|+.|+.+ .++.... .......+..|... +
T Consensus 82 ~~~v~~~d~~-g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 82 ANKIGKLSKK-G--GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSD 156 (300)
T ss_dssp TTEEEEECTT-S--CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTT
T ss_pred CCeEEEECCC-C--CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCC
Confidence 3566666543 2 33322111112445666554 67787766 4578888876 4443221 11112345566553 3
Q ss_pred CEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCC-cEEEEe
Q 000944 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFG-NIYFVR 1054 (1213)
Q Consensus 995 ~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~g-nl~il~ 1054 (1213)
+.++++|...+ .+++|+. ..++..+...........+.+=.++.+.+++..+ .|+.+.
T Consensus 157 g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 157 NALWFTENQNN-SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp SSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred CCEEEEecCCC-eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 45888887543 3556766 4444444322222233333222233455555433 355544
No 180
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=50.88 E-value=2.5e+02 Score=29.67 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=72.3
Q ss_pred EEEEEEeecCcc--eEeccccCeEEEEeCC--eEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEE
Q 000944 935 ELLHKTQVEGIP--LALCQFQGRLLAGIGP--VLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCK 1010 (1213)
Q Consensus 935 ~~~~~~~~~g~V--~ai~~~~g~ll~~~g~--~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~ 1010 (1213)
+++.+....... ..+.--++.|.++.|. +|..+++...+.++.. ++. ..+...+...++.|++.+-..+. ++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~-v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGL-LFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCE-EEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCE-EEE
Confidence 344444443333 4555557889999987 6888888877766655 553 34667788899999999887775 445
Q ss_pred EeccCCe-EEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEe
Q 000944 1011 YRRDENQ-LYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVR 1054 (1213)
Q Consensus 1011 ~~~~~~~-l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~ 1054 (1213)
|+.+..+ +..+.-.... |..+ -|...++++|..+.|++++
T Consensus 121 ~D~~Tl~~~~ti~~~~eG-wGLt---~Dg~~L~vSdGs~~l~~iD 161 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEG-WGLC---YWNGKLVRSDGGTMLTFHE 161 (268)
T ss_dssp EETTTTEEEEEEECSSCC-CCEE---EETTEEEEECSSSEEEEEC
T ss_pred EECCcCcEEEEEeCCCce-eEEe---cCCCEEEEECCCCEEEEEc
Confidence 7754433 3344333322 3333 3556788899877777764
No 181
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=50.32 E-value=1.4e+02 Score=32.69 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=71.4
Q ss_pred ceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEe-ecCcceEeccccCeEEEEeC---------------
Q 000944 898 GTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQ-VEGIPLALCQFQGRLLAGIG--------------- 961 (1213)
Q Consensus 898 ~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~-~~g~V~ai~~~~g~ll~~~g--------------- 961 (1213)
..++++|-....+ +........++.|+.... +.+.+.... ..-.-.+++.++++|++.-|
T Consensus 66 ~~lyv~GG~~~~~--~~~~~~~~~v~~yd~~~~--~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 66 GNLYVFGGIGKNS--EGLTQVFNDVHKYNPKTN--SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp TEEEEECCEEECT--TSCEEECCCEEEEETTTT--EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCC--CccceeeccEEEEeCCCC--cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhh
Confidence 3677777652211 011223345677776654 555544322 11112334558898877555
Q ss_pred --------------------------CeEEEEecCCceeeceeeecCccceE-EEEEEeCCEEE-Eee------cCCcEE
Q 000944 962 --------------------------PVLRLYDLGKKRLLRKCENKLFPNTI-VSINTYRDRIY-VGD------IQESFH 1007 (1213)
Q Consensus 962 --------------------------~~l~i~~~~~~~l~~~~~~~~~~~~i-~~l~~~~~~I~-vgD------~~~Sv~ 1007 (1213)
+.+.+|+....++...+... .+-.. .++.+.++.|+ +|- ....+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESP-WYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECS-SCCCBSCEEEEETTEEEEECCEEETTEECCCEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCC-CCCcccccEEEECCEEEEEeeecCCCcccCceE
Confidence 57889999888777665443 12122 45555676665 442 233444
Q ss_pred EEEEeccCCeEEEeeccCCCcc--eEEEEeecCCeee
Q 000944 1008 FCKYRRDENQLYIFADDSVPRW--LTAAHHIDFDTMA 1042 (1213)
Q Consensus 1008 ~l~~~~~~~~l~~~a~D~~~~~--~~~~~~ld~~~~l 1042 (1213)
.+.++.+.++-..++.-..++. ..++..+++.-++
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv 257 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIF 257 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEE
Confidence 4444445667777765444443 3334445544333
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=49.45 E-value=3.9e+02 Score=31.58 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=44.7
Q ss_pred CEEEEEEe-CCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEeCCcEEEEEeCCCCceeEeEEe
Q 000944 550 LQVVIALS-GGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSYDNTIRILSLDPDDCMQILSVQ 628 (1213)
Q Consensus 550 ~~v~v~~s-~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~ 628 (1213)
+.++|+.+ ++++.++..+ ++++ +.++.....+-++.+.+ ...+++++..++.|.++++.. ...+.+..-
T Consensus 167 ~~~~V~~~~~~~V~viD~~-t~~v--~~~i~~g~~p~~v~~Sp------DGr~lyv~~~dg~V~viD~~~-~t~~~v~~i 236 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGS-TYEI--KTVLDTGYAVHISRLSA------SGRYLFVIGRDGKVNMIDLWM-KEPTTVAEI 236 (567)
T ss_dssp GEEEEEETTTTEEEEEETT-TCCE--EEEEECSSCEEEEEECT------TSCEEEEEETTSEEEEEETTS-SSCCEEEEE
T ss_pred ceEEEEeCCCCeEEEEECC-CCeE--EEEEeCCCCccceEECC------CCCEEEEEcCCCeEEEEECCC-CCCcEeEEE
Confidence 34444443 4577766543 2332 23455556666777754 356788888889999998831 123333332
Q ss_pred ecCCCCceeEE
Q 000944 629 SVSSPPESLLF 639 (1213)
Q Consensus 629 ~l~~~p~Sl~~ 639 (1213)
.....|+.+.+
T Consensus 237 ~~G~~P~~ia~ 247 (567)
T 1qks_A 237 KIGSEARSIET 247 (567)
T ss_dssp ECCSEEEEEEE
T ss_pred ecCCCCceeEE
Confidence 33334666554
No 183
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=49.19 E-value=2.8e+02 Score=29.78 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=77.5
Q ss_pred CceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEeCCeEEEEecCCceee
Q 000944 897 HGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGIGPVLRLYDLGKKRLL 975 (1213)
Q Consensus 897 ~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~ 975 (1213)
.+.++++++. .|+|+.|+... .+.+.. ..++.|.++..- +|+++++....|++|++...++.
T Consensus 60 ~~~l~~~d~~------------~~~i~~~d~~~--~~~~~~---~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 60 SGTAWWFNIL------------ERELHELHLAS--GRKTVH---ALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLT 122 (326)
T ss_dssp TTEEEEEEGG------------GTEEEEEETTT--TEEEEE---ECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEE
T ss_pred CCEEEEEECC------------CCEEEEEECCC--CcEEEE---ECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEE
Confidence 3467777653 35666665433 244432 245678887654 67888888888999998766654
Q ss_pred ceeeec-Cc-cceEEEEEEe-CCEEEEeecC-----CcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecC
Q 000944 976 RKCENK-LF-PNTIVSINTY-RDRIYVGDIQ-----ESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADK 1046 (1213)
Q Consensus 976 ~~~~~~-~~-~~~i~~l~~~-~~~I~vgD~~-----~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~ 1046 (1213)
...... .. ...+.++.+. ++.+++|+.. ..-.+++++ ..++..+..+.. ....+.+- |...+.++|.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~--~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS--IPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES--SEEEEEECTTSCEEEEEET
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc--ccCCeEEcCCCCEEEEEEC
Confidence 332221 01 1245566553 3457888764 245677777 355554432211 12222232 2234555554
Q ss_pred -CCcEEEEecC
Q 000944 1047 -FGNIYFVRLP 1056 (1213)
Q Consensus 1047 -~gnl~il~~~ 1056 (1213)
.+.|+++.++
T Consensus 199 ~~~~I~~~d~~ 209 (326)
T 2ghs_A 199 KVNRLMRVPLD 209 (326)
T ss_dssp TTCEEEEEEBC
T ss_pred CCCEEEEEEcc
Confidence 5778888875
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=49.14 E-value=1.7e+02 Score=31.16 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=72.0
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe-CC-----eEEEEecCCceeeceeeecCccceEEEEE
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI-GP-----VLRLYDLGKKRLLRKCENKLFPNTIVSIN 991 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~-g~-----~l~i~~~~~~~l~~~~~~~~~~~~i~~l~ 991 (1213)
.|+|++|+.... +++.+.. ...+.|.+++.- +|+|+++. +. .|++|+.+..++............+.++.
T Consensus 65 ~~~i~~~d~~~~--~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~ 141 (333)
T 2dg1_A 65 EGNIFKINPETK--EIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV 141 (333)
T ss_dssp TCEEEEECTTTC--CEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred CCEEEEEeCCCC--cEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE
Confidence 367777755432 4444332 235678888754 67777765 33 78888887655432211000123455665
Q ss_pred Ee-CCEEEEeecCC-----cEEEEEEeccCCeEEEeeccCCCcceEEEEeecCC-eeeeec-CCCcEEEEecC
Q 000944 992 TY-RDRIYVGDIQE-----SFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD-TMAGAD-KFGNIYFVRLP 1056 (1213)
Q Consensus 992 ~~-~~~I~vgD~~~-----Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~l~~D-~~gnl~il~~~ 1056 (1213)
.. ++.+++++... ...+++++.+..++..+.... .....+.+-.++ .+.++| ..+.|+++...
T Consensus 142 ~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 142 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--SVANGIALSTDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--CcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence 54 45688888642 456788877655555543321 122333332222 354444 56788888764
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=45.92 E-value=2.8e+02 Score=28.91 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=18.1
Q ss_pred eecCceeceEEEeeecCCCccEEEEEecccceEEEEec
Q 000944 1092 FHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAF 1129 (1213)
Q Consensus 1092 ~~lg~~v~~~~~~~~~~~~~~~i~~~t~~Gsig~l~~l 1129 (1213)
+..+..++.+..+ +.....+|.|..+++..+-+-
T Consensus 252 ~~~~~~~~~~~f~----~~d~~~L~v~t~~~l~~~~~~ 285 (296)
T 3e5z_A 252 VLTPQTTSNLCFG----GPEGRTLYMTVSTEFWSIETN 285 (296)
T ss_dssp EECSSCCCEEEEE----STTSCEEEEEETTEEEEEECS
T ss_pred EECCCCceeEEEE----CCCCCEEEEEcCCeEEEEEcc
Confidence 4444335555432 123345666667788877653
No 186
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=45.67 E-value=2e+02 Score=32.29 Aligned_cols=129 Identities=11% Similarity=0.051 Sum_probs=71.9
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cC-eEEEEeC----CeEEEEecCCceeeceeeecCccceEEEEE-
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QG-RLLAGIG----PVLRLYDLGKKRLLRKCENKLFPNTIVSIN- 991 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g-~ll~~~g----~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~- 991 (1213)
.++|+++++.. .+++.+.. ..+.|.+++-- +| +|+.+.. ..|++|++...+....... +..+.++.
T Consensus 158 ~~~i~i~d~~g--~~~~~l~~--~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~---~~~~~~~~~ 230 (415)
T 2hqs_A 158 PYELRVSDYDG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAF 230 (415)
T ss_dssp CEEEEEEETTS--CSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC---SSCEEEEEE
T ss_pred cceEEEEcCCC--CCCEEEeC--CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC---CCcccCEEE
Confidence 48899998753 24444432 45777776543 34 4555443 3899999986655433322 22344444
Q ss_pred -EeCCEEE-EeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCC-ee-eeecCCC--cEEEEecC
Q 000944 992 -TYRDRIY-VGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFD-TM-AGADKFG--NIYFVRLP 1056 (1213)
Q Consensus 992 -~~~~~I~-vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~-~~-l~~D~~g--nl~il~~~ 1056 (1213)
..+++|+ .+.......++.|+....++..+... ...+++..+-.++ .+ ++++..| .|++++..
T Consensus 231 spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 231 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 4567777 44443445566677666666555433 2345666665333 34 3455566 45555543
No 187
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=44.60 E-value=3.6e+02 Score=29.75 Aligned_cols=178 Identities=10% Similarity=-0.003 Sum_probs=0.0
Q ss_pred eEEEEEeC-CCCceEEEEEc-CCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 860 SCIRVLDP-RSANTTCLLEL-QDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 860 s~i~l~d~-~~~~~~~~~~~-~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
..+++++. .+++.+.++.+ .+.+.+.++..+. +..++++=|.. -|.|.+|++..+ +.++.+
T Consensus 157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~----g~~~~LaSgS~------------D~TIkIWDl~TG-k~l~tL 219 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ----GMQEALLGTTI------------MNNIVIWNLKTG-QLLKKM 219 (356)
T ss_dssp CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE----TSTTEEEEEET------------TSEEEEEETTTC-CEEEEE
T ss_pred CcEEEEEECCCCceeeeeccCCCceeeEEeeccC----CCCceEEEecC------------CCcEEEEECCCC-cEEEEE
Q ss_pred EEEeecCcceEeccc--cCeEEEEeC--------------CeEEEEecCCceeeceeee---cCccceEEEEEEeCCEEE
Q 000944 938 HKTQVEGIPLALCQF--QGRLLAGIG--------------PVLRLYDLGKKRLLRKCEN---KLFPNTIVSINTYRDRIY 998 (1213)
Q Consensus 938 ~~~~~~g~V~ai~~~--~g~ll~~~g--------------~~l~i~~~~~~~l~~~~~~---~~~~~~i~~l~~~~~~I~ 998 (1213)
......-...+...| +|.++++.. .++++|+....+.+..... +.......+....+.+++
T Consensus 220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lA 299 (356)
T 2w18_A 220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAA 299 (356)
T ss_dssp ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEE
T ss_pred cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEE
Q ss_pred EeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEe-ecCCeeeeecCCCcEEEEecC
Q 000944 999 VGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHH-IDFDTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 999 vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~-ld~~~~l~~D~~gnl~il~~~ 1056 (1213)
.|..-+.|.+ |+-..+++...-+......+..+.| =|...++.+..+++|.++++.
T Consensus 300 SgS~DgTIkI--WDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 300 AILTSGTIAI--WDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEETTSCEEE--EETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred EEcCCCcEEE--EECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
No 188
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=44.20 E-value=3.6e+02 Score=29.69 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=56.9
Q ss_pred CeEEEEecCCceeece---eeecCccceEEEEEE----------eCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCc
Q 000944 962 PVLRLYDLGKKRLLRK---CENKLFPNTIVSINT----------YRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPR 1028 (1213)
Q Consensus 962 ~~l~i~~~~~~~l~~~---~~~~~~~~~i~~l~~----------~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~ 1028 (1213)
++|++|+....+.... ..+..+...|.++.. .+.+|+-|-.-+.+-+.............. ...
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~~~ 187 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---LSS 187 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---CSS
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---CCC
Confidence 5899999876654322 223333456777765 345666666666777766654332222222 234
Q ss_pred ceEEEEee-cCC-eeeeecCCCcEEEEecCC
Q 000944 1029 WLTAAHHI-DFD-TMAGADKFGNIYFVRLPQ 1057 (1213)
Q Consensus 1029 ~~~~~~~l-d~~-~~l~~D~~gnl~il~~~~ 1057 (1213)
.++++.|- ++. .++.+..+|.+.+++...
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 56777765 333 477899999999998754
No 189
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=42.47 E-value=5.5e+02 Score=31.31 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=49.6
Q ss_pred CcceEeccc-cCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEe
Q 000944 944 GIPLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIF 1021 (1213)
Q Consensus 944 g~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~ 1021 (1213)
..|++|..- +|+|.++..+-|..|+....++.... ...+..+.++...++.|.+|+.. + +++|+...+++..+
T Consensus 63 ~~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~--~~~~~~i~~i~~~~g~lWigt~~-G--l~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPE--TDFPTDVRTMALQGDTLWLGALN-G--LYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTEEEEEETTTTEECCCS--CCCCSCEEEEEEETTEEEEEETT-E--EEEEETTTCCEEEE
T ss_pred ceEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECcc--cCCCceEEEEEecCCcEEEEcCC-c--ceeEeCCCCeEEEe
Confidence 457776544 68999999989999988766654311 11233466666678899999864 5 56777766677655
No 190
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=42.37 E-value=2.4e+02 Score=34.98 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=70.2
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEe--ccccCeEEEEe-C--CeEEEEecCCceeeceeeec-CccceEEEEEE
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLAL--CQFQGRLLAGI-G--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINT 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai--~~~~g~ll~~~-g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~ 992 (1213)
.++|.+++.+ |...+.+....... +.+| .+.+|+|+++- | .+|....++........... ..| ..+.++.
T Consensus 492 ~~~I~v~~ld--G~~~~~l~~~~l~~-P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P-~GLavD~ 567 (791)
T 3m0c_C 492 LGTVSVADTK--GVKRKTLFRENGSK-PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDL 567 (791)
T ss_dssp TTEEEEEETT--SSSEEEEEECTTCC-EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE-EEEEEET
T ss_pred CCeEEEEeCC--CCeEEEEEeCCCCC-cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc-eEEEEec
Confidence 4566666544 33444444433333 4444 45678887765 4 47888888754332221111 112 3455556
Q ss_pred eCCEEEEeecCCcEEEEEEeccCCeEEEeecc-CCCcceEEEEeecCCeeeeecCC-CcEEEEe
Q 000944 993 YRDRIYVGDIQESFHFCKYRRDENQLYIFADD-SVPRWLTAAHHIDFDTMAGADKF-GNIYFVR 1054 (1213)
Q Consensus 993 ~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D-~~~~~~~~~~~ld~~~~l~~D~~-gnl~il~ 1054 (1213)
.+++|+++|.... .+.+++.+......+... ....+..++.+ +++.+..+|.. +.|+.+.
T Consensus 568 ~~~~LYwaD~~~~-~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 568 LSGRLYWVDSKLH-SISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp TTTEEEEEETTTT-EEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCC-cEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCEEEEEe
Confidence 6899999998764 345565555444333332 22334444443 56677778864 4455554
No 191
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=40.32 E-value=2.2e+02 Score=32.21 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=68.3
Q ss_pred eecCcceEeccc-cCeEEE----Ee--CCeEEEEecCCc-----e----eeceeeecCccceEEEEEEe---CCEEEEee
Q 000944 941 QVEGIPLALCQF-QGRLLA----GI--GPVLRLYDLGKK-----R----LLRKCENKLFPNTIVSINTY---RDRIYVGD 1001 (1213)
Q Consensus 941 ~~~g~V~ai~~~-~g~ll~----~~--g~~l~i~~~~~~-----~----l~~~~~~~~~~~~i~~l~~~---~~~I~vgD 1001 (1213)
..+++|++++-- +|.+++ +. ...|++|++... + +.....+..+...+.++... +++++.|.
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 456788887643 344444 22 237899988532 1 11112222234567777764 56888899
Q ss_pred cCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecCCCcEEEEecC
Q 000944 1002 IQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1002 ~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~gnl~il~~~ 1056 (1213)
.-..+.++..+.. .. ......+...++++.+- +...++++..+|.+.+++..
T Consensus 170 ~Dg~v~iwD~~~~--~~-~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 170 ADGSIAVLQVTET--VK-VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TTSCEEEEEESSS--EE-EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCeEEEEEcCCC--cc-eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 8888988766543 22 12222234567777664 44467788899999998765
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=38.86 E-value=3.3e+02 Score=27.66 Aligned_cols=225 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred CceEEEE-e-CCeEEEEEEccCCCeeEEEEEeCCCccceeeecCCCceEEEEEccCCCCCHHHHHHHHHHhhHhcCCCCC
Q 000944 746 VEGVVSV-A-GNALRVFTIERLGETFNETALPLRYTPRRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGEN 823 (1213)
Q Consensus 746 ~~~~i~~-~-~~~L~i~~l~~~~~~~~~r~i~l~~tp~~i~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1213)
+++-+++ . ...=.|..++.-..........-...|+.|++++..++|+... ..
T Consensus 33 ~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~------------------------ 87 (270)
T 1rwi_B 33 SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NN------------------------ 87 (270)
T ss_dssp TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TT------------------------
T ss_pred CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CC------------------------
Q ss_pred CCCCcccccCCCCCCCCCCCCccccCCCCCCCCceeeEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEE
Q 000944 824 GNGNMDQMENGDDENKYDPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAV 903 (1213)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~V 903 (1213)
.+..+|+. ......+.......+.++.. .....+.|
T Consensus 88 -------------------------------------~i~~~d~~-~~~~~~~~~~~~~~p~~i~~------~~~g~l~v 123 (270)
T 1rwi_B 88 -------------------------------------RVVTLAAG-SNNQTVLPFDGLNYPEGLAV------DTQGAVYV 123 (270)
T ss_dssp -------------------------------------EEEEECTT-CSCCEECCCCSCSSEEEEEE------CTTCCEEE
T ss_pred -------------------------------------EEEEEeCC-CceEeeeecCCcCCCcceEE------CCCCCEEE
Q ss_pred EeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeee
Q 000944 904 GTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCEN 980 (1213)
Q Consensus 904 GT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~ 980 (1213)
+... .|+|+.| ..+..............+.+|+.- +|+|+++. ++.|++|+.+..........
T Consensus 124 ~~~~-----------~~~i~~~---~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~ 189 (270)
T 1rwi_B 124 ADRG-----------NNRVVKL---AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT 189 (270)
T ss_dssp EEGG-----------GTEEEEE---CTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS
T ss_pred EECC-----------CCEEEEE---ECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc
Q ss_pred cCccceEEEEEEeCC-EEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecC-CCcEEEEecCC
Q 000944 981 KLFPNTIVSINTYRD-RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADK-FGNIYFVRLPQ 1057 (1213)
Q Consensus 981 ~~~~~~i~~l~~~~~-~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~-~gnl~il~~~~ 1057 (1213)
. + ..+..|....+ .++++|...+- +.+|+.+............ ....++.+-.++.+.++|. .+.|.+|+.++
T Consensus 190 ~-~-~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 190 D-I-TAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTVLPFTGL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp S-C-CSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEECCCCSC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred C-C-CCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcceeeccCCC-CCceeEEECCCCCEEEEECCCCEEEEEcCCC
No 193
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=38.38 E-value=4e+02 Score=28.58 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=65.9
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcc-eEeccccCeEEEEe-C--CeEEEEecCCceeeceeeec-CccceEEEEEEe
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIP-LALCQFQGRLLAGI-G--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTY 993 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V-~ai~~~~g~ll~~~-g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~ 993 (1213)
.++|.+++.+ |...+.+.......|- .++.+.+|+|..+- | .+|+.++++........... ..| ....++..
T Consensus 100 ~~~I~~~~~d--G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P-nglavd~~ 176 (318)
T 3sov_A 100 TNRIEVSNLD--GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP-NGLTLDYE 176 (318)
T ss_dssp TTEEEEEETT--SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE-EEEEEETT
T ss_pred CCEEEEEECC--CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc-cEEEEecc
Confidence 4566665543 2233333333333332 23444678887766 3 57888887743221111111 123 34455556
Q ss_pred CCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCC-cEEEEe
Q 000944 994 RDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFG-NIYFVR 1054 (1213)
Q Consensus 994 ~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~g-nl~il~ 1054 (1213)
++.|+++|.... .+.+++.+......+.... ..+...+. ++++.+..+|..+ .|..+.
T Consensus 177 ~~~lY~aD~~~~-~I~~~d~dG~~~~~~~~~~-~~~P~gla-v~~~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 177 EQKLYWADAKLN-FIHKSNLDGTNRQAVVKGS-LPHPFALT-LFEDILYWTDWSTHSILACN 235 (318)
T ss_dssp TTEEEEEETTTT-EEEEEETTSCSCEEEECSC-CSCEEEEE-EETTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCC-EEEEEcCCCCceEEEecCC-CCCceEEE-EeCCEEEEEecCCCeEEEEE
Confidence 899999998765 3555655543333333311 22333333 3667777777644 444444
No 194
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=38.27 E-value=3.3e+02 Score=27.61 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=56.8
Q ss_pred EEEEEec--CCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEEEEEEe--CCcEEEEEeC
Q 000944 542 IVKVGSN--RLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFLAVGSY--DNTIRILSLD 617 (1213)
Q Consensus 542 I~~as~~--~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l~v~~~--~~~i~i~sl~ 617 (1213)
|...+.. +.+++.. +++.|.++.+...++...+....-...+.++++.+ ...+++.+.+ ++...||.++
T Consensus 44 v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp------dg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP------DGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp CEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT------TSSEEEEEECTTTSSCEEEEEE
T ss_pred eEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccccccccccceEECC------CCCEEEEEEeCCCCcceEEEEE
Confidence 4444443 3455544 57788877665313333221111123456677754 2456777764 4566776664
Q ss_pred CCC-ceeEeEEeecCCCCceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEEEeCCCC
Q 000944 618 PDD-CMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTG 679 (1213)
Q Consensus 618 p~~-~l~~~~~~~l~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~~~~~~~ 679 (1213)
.+. .... +..... .....+. ..++..++.+..+|.+..|.++...+
T Consensus 117 ~~~~~~~~-----~~~~~~-~~~~~~s----------pdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 117 STGGTPRL-----MTKNLP-SYWHGWS----------PDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp TTCCCCEE-----CCSSSS-EEEEEEC----------TTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCceEE-----eecCCC-ccceEEC----------CCCCEEEEEECCCCceEEEEEECCCC
Confidence 321 2211 111111 1112332 12444555788899887788775443
No 195
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=37.84 E-value=4.5e+02 Score=29.02 Aligned_cols=134 Identities=16% Similarity=0.043 Sum_probs=69.3
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcc-eEeccccCeEEEEeC--CeEEEEecCCceeeceeeec-CccceEEEEEEeC
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIP-LALCQFQGRLLAGIG--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTYR 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V-~ai~~~~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~~ 994 (1213)
.++|+.++.+ +...+.+.......|. .++...+++|+++-. +.|.+++++........... ..| ....++..+
T Consensus 137 ~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P-~giavdp~~ 213 (386)
T 3v65_B 137 LDRILRANLN--GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP-RAIALHPME 213 (386)
T ss_dssp TTEEEEEETT--SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCE-EEEEEETTT
T ss_pred CCcEEEEecC--CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCC-cEEEEEcCC
Confidence 3455444433 3344444433333433 345556788766543 47777777643221111111 112 233344458
Q ss_pred CEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEee-cCCeeeeecCCC-cEEEEecC
Q 000944 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHI-DFDTMAGADKFG-NIYFVRLP 1056 (1213)
Q Consensus 995 ~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~l-d~~~~l~~D~~g-nl~il~~~ 1056 (1213)
++|++.|....-.+.+++.+......+..+ .-.|...+.+= +.+.+..+|... .|..+.++
T Consensus 214 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMDGSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CeEEEeccCCCCEEEEEeCCCCCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 899999987755677887765444444322 12344443331 345777788754 45555544
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=36.69 E-value=1.5e+02 Score=31.07 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=54.0
Q ss_pred ccEEEEEEEEeCCceE---EEEEEEeecCcceEeccc-cCeEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEE--
Q 000944 919 AGYIHIYRFVEEGKSL---ELLHKTQVEGIPLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINT-- 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl---~~~~~~~~~g~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~-- 992 (1213)
.++|++|++..++ ++ ..+. ....+.+.+|+.- +|+|+++.++.|.+|+.+.+.+ ...... ..+.++..
T Consensus 192 ~~~i~~~~~~~~g-~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~-~~~~~~---~~~~~~~f~~ 265 (296)
T 3e5z_A 192 DNATHRYCLNARG-ETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDEL-GRVLTP---QTTSNLCFGG 265 (296)
T ss_dssp TTEEEEEEECSSS-CEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEE-EEEECS---SCCCEEEEES
T ss_pred CCeEEEEEECCCC-cCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEE-EEEECC---CCceeEEEEC
Confidence 4689999987433 44 2233 3345566666553 6788888899999999874433 222222 11344433
Q ss_pred -eCCEEEEeecCCcEEEEEEeccCCeE
Q 000944 993 -YRDRIYVGDIQESFHFCKYRRDENQL 1018 (1213)
Q Consensus 993 -~~~~I~vgD~~~Sv~~l~~~~~~~~l 1018 (1213)
.++.+++++. ++ +++++....++
T Consensus 266 ~d~~~L~v~t~-~~--l~~~~~~~~~~ 289 (296)
T 3e5z_A 266 PEGRTLYMTVS-TE--FWSIETNVRGL 289 (296)
T ss_dssp TTSCEEEEEET-TE--EEEEECSCCBC
T ss_pred CCCCEEEEEcC-Ce--EEEEEcccccc
Confidence 2358888876 34 66666655544
No 197
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=35.86 E-value=3.9e+02 Score=28.07 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=25.2
Q ss_pred eEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecC------CcEEEEEEe
Q 000944 963 VLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQ------ESFHFCKYR 1012 (1213)
Q Consensus 963 ~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~------~Sv~~l~~~ 1012 (1213)
.|+.|+....++....... .+ ....++..++.++++|.. ..+..+..+
T Consensus 170 ~v~~~d~~~g~~~~~~~~~-~p-~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMADLD-HP-NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEEEECSSSCCCEEEEEES-SE-EEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred eEEEEcCCCCcEEEEecCC-CC-cceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 4666665445544333111 12 233444456789999987 455554444
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=34.81 E-value=5.2e+02 Score=28.79 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=55.4
Q ss_pred eeeCCCCccEEEEEecCCEEEEEEe----------CCEEEEEEEccCCCeEEeeeeccCcceEEEEeeecCCCceeeeEE
Q 000944 533 EWRTPGKRTIVKVGSNRLQVVIALS----------GGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSRFL 602 (1213)
Q Consensus 533 ~~~~~~~~~I~~as~~~~~v~v~~s----------~~~l~~l~~~~~~~l~~~~~~~l~~~is~i~i~~~~~~~~~~~~l 602 (1213)
.|.+ .|......+-....+.+++. .+++..+... .+ ..+.++.+..++-.|++.+- ....+
T Consensus 276 g~~p-~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~--kv~~~i~vg~~~~~lavs~D-----~~~~l 346 (386)
T 3sjl_D 276 GWRP-GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TG--ERLAKFEMGHEIDSINVSQD-----EKPLL 346 (386)
T ss_dssp TEEE-CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TC--CEEEEEEEEEEECEEEECSS-----SSCEE
T ss_pred cccC-CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-CC--eEEEEEECCCCcceEEECCC-----CCeEE
Confidence 3555 33333333445677777764 1356655433 12 23345566667777888542 23467
Q ss_pred EEEEe-CCcEEEEEeCCCCceeEeEEeecCCCCceeEEE
Q 000944 603 AVGSY-DNTIRILSLDPDDCMQILSVQSVSSPPESLLFL 640 (1213)
Q Consensus 603 ~v~~~-~~~i~i~sl~p~~~l~~~~~~~l~~~p~Sl~~~ 640 (1213)
+++.| ++.|.++.... .+.+..-++...|.++++.
T Consensus 347 y~tn~~~~~VsViD~~t---~k~~~~i~~~~~p~~l~~s 382 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAES---GEELRSVNQLGHGPQVITT 382 (386)
T ss_dssp EEEETTTTEEEEEETTT---CCEEEEECCCCSSCCEEEE
T ss_pred EEEcCCCCeEEEEECCC---CcEEEEecCCCCCceeEEC
Confidence 78778 89999998742 4445544555667777653
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=33.90 E-value=4.4e+02 Score=27.75 Aligned_cols=139 Identities=12% Similarity=0.040 Sum_probs=63.9
Q ss_pred EEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEEEE-
Q 000944 861 CIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHK- 939 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~~~- 939 (1213)
.|.++|+.+.+..... ......+.++.. .. + .. +.|++.. +....++|++|+... .+++.+..
T Consensus 67 ~i~~~d~~~~~~~~~~-~~~~~~~~~i~~---~~-d-g~-l~v~~~~-------~~~~~~~i~~~d~~~--~~~~~~~~~ 130 (333)
T 2dg1_A 67 NIFKINPETKEIKRPF-VSHKANPAAIKI---HK-D-GR-LFVCYLG-------DFKSTGGIFAATENG--DNLQDIIED 130 (333)
T ss_dssp EEEEECTTTCCEEEEE-ECSSSSEEEEEE---CT-T-SC-EEEEECT-------TSSSCCEEEEECTTS--CSCEEEECS
T ss_pred EEEEEeCCCCcEEEEe-eCCCCCcceEEE---CC-C-Cc-EEEEeCC-------CCCCCceEEEEeCCC--CEEEEEEcc
Confidence 5667777665543222 133455666542 22 2 23 4445432 111235676665433 24442221
Q ss_pred EeecCcceEeccc-cCeEEEEeC--------CeEEEEecCCceeeceeeecCccceEEEEE--EeCCEEEEeecC-CcEE
Q 000944 940 TQVEGIPLALCQF-QGRLLAGIG--------PVLRLYDLGKKRLLRKCENKLFPNTIVSIN--TYRDRIYVGDIQ-ESFH 1007 (1213)
Q Consensus 940 ~~~~g~V~ai~~~-~g~ll~~~g--------~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~--~~~~~I~vgD~~-~Sv~ 1007 (1213)
......+.+++.- +|+++++.. ..|+.++.+..++...... .. ....+. ..+++++++|.. ..+.
T Consensus 131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~-~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS-VANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES-SEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC-cccceEECCCCCEEEEEeCCCCeEE
Confidence 1122345555443 577777654 2455555544344332111 11 233443 345688888765 4565
Q ss_pred EEEEeccCCeE
Q 000944 1008 FCKYRRDENQL 1018 (1213)
Q Consensus 1008 ~l~~~~~~~~l 1018 (1213)
++..+.+...+
T Consensus 208 ~~d~~~~g~~~ 218 (333)
T 2dg1_A 208 RIALEDDGVTI 218 (333)
T ss_dssp EEEECTTSSSE
T ss_pred EEEecCCCcCc
Confidence 55544333334
No 200
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=33.75 E-value=50 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 000944 1184 LDLQRKIADELDRTPGEILKKLEEIRN 1210 (1213)
Q Consensus 1184 ~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1210 (1213)
.+.+.+||+..|++++|+.++|.+...
T Consensus 35 ~SR~~RIA~GSG~~v~eVn~Llkqf~~ 61 (69)
T 1dul_A 35 GSRKRRIAAGSGMQVQDVNRLLKQFDD 61 (69)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887653
No 201
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=32.34 E-value=4.6e+02 Score=27.46 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=71.8
Q ss_pred eEEEEEEEeecCc--ceEecccc-CeEEEEeC----CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCc
Q 000944 933 SLELLHKTQVEGI--PLALCQFQ-GRLLAGIG----PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQES 1005 (1213)
Q Consensus 933 kl~~~~~~~~~g~--V~ai~~~~-g~ll~~~g----~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~S 1005 (1213)
..+++.+..+.+. +..+.--. |+|+++.| ++|.+++....+.++...... ..+...+...++.+++++-..+
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~fgeGi~~~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SYFGEGLTLLNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEETTCS
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-CcceEEEEEeCCEEEEEEecCC
Confidence 4555666666554 34555444 78999876 589999998877766544432 2255567777999999998777
Q ss_pred EEEEEEeccCCe-EEEeecc-CCCcceEEEEeecCCeeeeecCCCcEEEEe
Q 000944 1006 FHFCKYRRDENQ-LYIFADD-SVPRWLTAAHHIDFDTMAGADKFGNIYFVR 1054 (1213)
Q Consensus 1006 v~~l~~~~~~~~-l~~~a~D-~~~~~~~~~~~ld~~~~l~~D~~gnl~il~ 1054 (1213)
.. +.|+.+..+ +..+.-. .. -|..+ -|...++++|..+.|++++
T Consensus 87 ~v-~viD~~t~~v~~~i~~g~~~-g~glt---~Dg~~l~vs~gs~~l~viD 132 (266)
T 2iwa_A 87 IG-FIYDRRTLSNIKNFTHQMKD-GWGLA---TDGKILYGSDGTSILYEID 132 (266)
T ss_dssp EE-EEEETTTTEEEEEEECCSSS-CCEEE---ECSSSEEEECSSSEEEEEC
T ss_pred EE-EEEECCCCcEEEEEECCCCC-eEEEE---ECCCEEEEECCCCeEEEEE
Confidence 53 347754433 3333222 22 23222 2566777888777776664
No 202
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=31.85 E-value=7.7e+02 Score=29.92 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=48.3
Q ss_pred CcceEeccccCeEEEEeCCeEEEEecCCceeeceeee-cCc-cceEEEEEEe-CCEEEEeecCCcEEEEEEeccCCeEEE
Q 000944 944 GIPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCEN-KLF-PNTIVSINTY-RDRIYVGDIQESFHFCKYRRDENQLYI 1020 (1213)
Q Consensus 944 g~V~ai~~~~g~ll~~~g~~l~i~~~~~~~l~~~~~~-~~~-~~~i~~l~~~-~~~I~vgD~~~Sv~~l~~~~~~~~l~~ 1020 (1213)
..|.+++.-+|.|.++..+.|+.|+....++...... ..+ ...+.+|... ++.|.+|+. ++ +++|+....++..
T Consensus 103 ~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~G--l~~~~~~~~~~~~ 179 (758)
T 3ott_A 103 TDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NG--LCRYIPSNGKFEG 179 (758)
T ss_dssp SCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEET-TE--EEEEETTTTEEEE
T ss_pred ceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CC--HhhCccCCCceEE
Confidence 3466776668899999888898888876655332100 011 2346677654 678899985 55 5678776666655
Q ss_pred e
Q 000944 1021 F 1021 (1213)
Q Consensus 1021 ~ 1021 (1213)
+
T Consensus 180 ~ 180 (758)
T 3ott_A 180 I 180 (758)
T ss_dssp E
T ss_pred e
Confidence 4
No 203
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=31.67 E-value=4.2e+02 Score=29.31 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=52.4
Q ss_pred eccccCeEEEEe-C--CeEEEEecCCceeeceeeec-CccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeecc
Q 000944 949 LCQFQGRLLAGI-G--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD 1024 (1213)
Q Consensus 949 i~~~~g~ll~~~-g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D 1024 (1213)
+.+.+|+|.++- + .+|+.++++........... ..| ....++..+++|+++|.... .+.+++.+......+...
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P-nGlavd~~~~~lY~aD~~~~-~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAVISQ 286 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE-EEEEEEGGGTEEEEEETTTT-EEEEECTTSCSCEEEECS
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCe-eeEEEeCCCCEEEEEECCCC-EEEEEeCCCCeeEEEEEC
Confidence 344578877654 2 46777777644322211111 112 34455556899999999876 455666554332222222
Q ss_pred CCCcceEEEEeecCCeeeeecCCCc
Q 000944 1025 SVPRWLTAAHHIDFDTMAGADKFGN 1049 (1213)
Q Consensus 1025 ~~~~~~~~~~~ld~~~~l~~D~~gn 1049 (1213)
. ..+...+.+ +++.+..+|..++
T Consensus 287 ~-~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 287 G-LPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp S-CSSEEEEEE-ETTEEEEEETTTT
T ss_pred C-CCCceEEEE-ECCEEEEeeCCCC
Confidence 1 223444444 6677777886443
No 204
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=31.55 E-value=5.3e+02 Score=27.94 Aligned_cols=107 Identities=15% Similarity=0.017 Sum_probs=59.1
Q ss_pred EeccccCeEEEEeC--CeEEEEecCCceeeceeeec-CccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeecc
Q 000944 948 ALCQFQGRLLAGIG--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD 1024 (1213)
Q Consensus 948 ai~~~~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D 1024 (1213)
++...+++|+++-. +.|.+++++.+......... ..| ....++..+++|++.|....-.+.+++.+......+..+
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P-~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCc-ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 44456788876643 47888888754321111111 112 223344458899999988755677787765544444332
Q ss_pred CCCcceEEEEee-cCCeeeeecCCC-cEEEEecC
Q 000944 1025 SVPRWLTAAHHI-DFDTMAGADKFG-NIYFVRLP 1056 (1213)
Q Consensus 1025 ~~~~~~~~~~~l-d~~~~l~~D~~g-nl~il~~~ 1056 (1213)
.-.|...+.+= +++.+..+|... .|..+.++
T Consensus 201 -~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 201 -HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 12334433331 345677788754 46666654
No 205
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=31.54 E-value=8e+02 Score=30.00 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=75.3
Q ss_pred EEEEEeCCCCceEEEEEc----CCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEE
Q 000944 861 CIRVLDPRSANTTCLLEL----QDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLEL 936 (1213)
Q Consensus 861 ~i~l~d~~~~~~~~~~~~----~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~ 936 (1213)
-+..+|+.+.+. ..+.. .++..+.++.. +.+.-+.|||. .+ |+.|+ ....+++.
T Consensus 428 Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~------d~~g~lwigt~--~G-----------l~~~~--~~~~~~~~ 485 (795)
T 4a2l_A 428 GLSILHRNSGQV-ENFNQRNSQLVNENVYAILP------DGEGNLWLGTL--SA-----------LVRFN--PEQRSFTT 485 (795)
T ss_dssp EEEEEETTTCCE-EEECTTTSCCSCSCEEEEEE------CSSSCEEEEES--SC-----------EEEEE--TTTTEEEE
T ss_pred ceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEE------CCCCCEEEEec--Cc-----------eeEEe--CCCCeEEE
Confidence 466677766543 22222 12345555542 23445888885 22 34444 32224443
Q ss_pred EEEE----e-ecCcceEeccc-cCeEEEEeCCeEEEEecCCceeecee---eecCc-cceEEEEEE-eCCEEEEeecCCc
Q 000944 937 LHKT----Q-VEGIPLALCQF-QGRLLAGIGPVLRLYDLGKKRLLRKC---ENKLF-PNTIVSINT-YRDRIYVGDIQES 1005 (1213)
Q Consensus 937 ~~~~----~-~~g~V~ai~~~-~g~ll~~~g~~l~i~~~~~~~l~~~~---~~~~~-~~~i~~l~~-~~~~I~vgD~~~S 1005 (1213)
.... . ....|++|..- +|.|.+|...-|+.|+....++ ... ....+ ...+.+|.. .++.|.+|+.. +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G 563 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G 563 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C
Confidence 3221 1 13567777654 6889888877788888765554 211 00111 235777765 45778999875 5
Q ss_pred EEEEEEeccCCeEEEee
Q 000944 1006 FHFCKYRRDENQLYIFA 1022 (1213)
Q Consensus 1006 v~~l~~~~~~~~l~~~a 1022 (1213)
+++|+.+.+++....
T Consensus 564 --l~~~d~~~~~~~~~~ 578 (795)
T 4a2l_A 564 --FYCFNEKDKQIKRYN 578 (795)
T ss_dssp --EEEEETTTTEEEEEC
T ss_pred --ceeECCCCCcEEEeC
Confidence 566877777776654
No 206
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=31.21 E-value=4.4e+02 Score=26.90 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=64.0
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEe--ccccCeEEEEe----CCeEEEEecCCceeeceeeec-CccceEEEEE
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLAL--CQFQGRLLAGI----GPVLRLYDLGKKRLLRKCENK-LFPNTIVSIN 991 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai--~~~~g~ll~~~----g~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~ 991 (1213)
.++|.+++.+. ...+.+...... .+..| .+-+|+|.++- +++|+.+.++........... ..| ....++
T Consensus 100 ~~~I~~~~~~g--~~~~~~~~~~~~-~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P-~gia~d 175 (267)
T 1npe_A 100 LDRIEVAKMDG--TQRRVLFDTGLV-NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP-NGLTFD 175 (267)
T ss_dssp TTEEEEEETTS--CSCEEEECSSCS-SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE-EEEEEE
T ss_pred CCEEEEEEcCC--CCEEEEEECCCC-CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCC-cEEEEc
Confidence 46777766542 223333222222 33444 33468887765 347888888754322111111 112 223444
Q ss_pred EeCCEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCC-CcEEEEe
Q 000944 992 TYRDRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKF-GNIYFVR 1054 (1213)
Q Consensus 992 ~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~-gnl~il~ 1054 (1213)
..+++++++|.... .+.+++.+......+... ..+...+. +|++.+.++|.. +.|+.++
T Consensus 176 ~~~~~lyv~d~~~~-~I~~~~~~g~~~~~~~~~--~~~P~gi~-~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 176 AFSSQLCWVDAGTH-RAECLNPAQPGRRKVLEG--LQYPFAVT-SYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp TTTTEEEEEETTTT-EEEEEETTEEEEEEEEEC--CCSEEEEE-EETTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCC-EEEEEecCCCceEEEecC--CCCceEEE-EeCCEEEEEECCCCeEEEEe
Confidence 45789999998764 244565544433333322 12222322 466777778865 4555544
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=30.17 E-value=6.1e+02 Score=28.20 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=65.4
Q ss_pred EEeecCcceEeccccC-eEEEEeCCeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCe
Q 000944 939 KTQVEGIPLALCQFQG-RLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQ 1017 (1213)
Q Consensus 939 ~~~~~g~V~ai~~~~g-~ll~~~g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~ 1017 (1213)
..++++ |++++- ++ .|+++.+..|++|+.....- ..... .+...+.++....+-+++++.-.++.++..+ ..+
T Consensus 84 ~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-~~~~~-~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~--~~~ 157 (388)
T 1xip_A 84 EKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSE-FRTVT-SFEKPVFQLKNVNNTLVILNSVNDLSALDLR--TKS 157 (388)
T ss_dssp EEECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTC-EEEEE-ECSSCEEEEEECSSEEEEEETTSEEEEEETT--TCC
T ss_pred EeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-cCccc-eeecceeeEEecCCCEEEEECCCCEEEEEcc--CCc
Confidence 345778 999887 65 56778888999999874321 11111 1233466777776668888888888876554 334
Q ss_pred EEEeeccCCCcceEEEEeecCCeeeeecCCCcEEEEec
Q 000944 1018 LYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRL 1055 (1213)
Q Consensus 1018 l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~gnl~il~~ 1055 (1213)
+..++ -.++++. .+.+.++++-.+|++.+|.-
T Consensus 158 ~~~~~-----~~Vs~v~-WSpkG~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 158 TKQLA-----QNVTSFD-VTNSQLAVLLKDRSFQSFAW 189 (388)
T ss_dssp EEEEE-----ESEEEEE-ECSSEEEEEETTSCEEEEEE
T ss_pred ccccc-----CCceEEE-EcCCceEEEEcCCcEEEEcC
Confidence 44332 2455544 44444666777898888844
No 208
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=29.10 E-value=4.8e+02 Score=26.62 Aligned_cols=130 Identities=11% Similarity=0.037 Sum_probs=65.9
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEecc--ccCeEEEEeC--CeEEEEecCCceeeceeeecCccceEEEEEE--
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQ--FQGRLLAGIG--PVLRLYDLGKKRLLRKCENKLFPNTIVSINT-- 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~--~~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~-- 992 (1213)
.|+|+.++.+. .+.+.+..... ..+..|+. -+++|+++-. ++|.+++++.+......... + .....|.+
T Consensus 57 ~~~I~~~~~~g--~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~-~~P~~i~vd~ 131 (267)
T 1npe_A 57 EPSIGRASLHG--GEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-L-VNPRGIVTDP 131 (267)
T ss_dssp TTEEEEEESSS--CCCEEEECTTC-CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C-SSEEEEEEET
T ss_pred CCEEEEEecCC--CCcEEEEECCC-CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-C-CCccEEEEee
Confidence 46777776542 23333222111 23445543 4678877653 57888888753221111111 1 12344444
Q ss_pred eCCEEEEeecCC-cEEEEEEeccCCeEEEeeccCCCcceEEEEeec--CCeeeeecCC-CcEEEEec
Q 000944 993 YRDRIYVGDIQE-SFHFCKYRRDENQLYIFADDSVPRWLTAAHHID--FDTMAGADKF-GNIYFVRL 1055 (1213)
Q Consensus 993 ~~~~I~vgD~~~-Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld--~~~~l~~D~~-gnl~il~~ 1055 (1213)
.+++++++|..+ +-.+.+++.+......+.... ..+...+. +| .+.+.++|.. +.|..+..
T Consensus 132 ~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~-~~~P~gia-~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 132 VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-LGLPNGLT-FDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-CSCEEEEE-EETTTTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECC-CCCCcEEE-EcCCCCEEEEEECCCCEEEEEec
Confidence 478999999863 334556665554444444321 22333333 44 3466677775 45666554
No 209
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=27.86 E-value=5.1e+02 Score=26.52 Aligned_cols=131 Identities=12% Similarity=0.147 Sum_probs=67.3
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-C
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-R 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~ 994 (1213)
.++|++|+ .++..++.+. ......+.+|+.- +|+++++. ++.|++|+.+.+.+........+ ..+..|... +
T Consensus 99 ~~~i~~~d--~~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~p~~i~~~~~ 174 (286)
T 1q7f_A 99 THQIQIYN--QYGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL-EFPNGVVVNDK 174 (286)
T ss_dssp GCEEEEEC--TTSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC-SSEEEEEECSS
T ss_pred CCEEEEEC--CCCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc-CCcEEEEECCC
Confidence 35677776 3333333221 1112345666543 57787764 35798998764433222111111 234566554 3
Q ss_pred CEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecCCC--cEEEEe
Q 000944 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFG--NIYFVR 1054 (1213)
Q Consensus 995 ~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~~g--nl~il~ 1054 (1213)
+.++++|...+ .+..|+.+...+..++.+....+...+.+-.++.++++|... .|.+|.
T Consensus 175 g~l~v~~~~~~-~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 175 QEIFISDNRAH-CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp SEEEEEEGGGT-EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred CCEEEEECCCC-EEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 56888887543 234466666666666544322344444433334666666543 576664
No 210
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=27.62 E-value=8.4e+02 Score=29.01 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred cEEEEEEEEeCCceEEEEEEEeecCcceEeccccCeEEEEeCCeEEEEecCC-----ceeeceeeecCcc----------
Q 000944 920 GYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGIGPVLRLYDLGK-----KRLLRKCENKLFP---------- 984 (1213)
Q Consensus 920 Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~~g~ll~~~g~~l~i~~~~~-----~~l~~~~~~~~~~---------- 984 (1213)
|.+++|++... +++.+....-.-.--+..+-+.+|+++.++.|++|++.. .+..+..... ..
T Consensus 101 ~~i~~~d~~~~--~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~-~~~~~~g~~~~~ 177 (706)
T 2z3z_A 101 GGLVGFDMLAR--KVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDG-TETLVYGQAVHQ 177 (706)
T ss_dssp TEEEEEETTTT--EEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCC-BTTEEESSCCGG
T ss_pred CEEEEEECCCC--ceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCC-CCCeEcccchhh
Q ss_pred -----ceEEEEEEeCCEEEEee-------------------------------cCCcEEEEEEeccCCeEEEeecc-CCC
Q 000944 985 -----NTIVSINTYRDRIYVGD-------------------------------IQESFHFCKYRRDENQLYIFADD-SVP 1027 (1213)
Q Consensus 985 -----~~i~~l~~~~~~I~vgD-------------------------------~~~Sv~~l~~~~~~~~l~~~a~D-~~~ 1027 (1213)
......+..+++|+++. -.....+..|+.+..+...+... ...
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Q ss_pred cceEEEEeecCCe-eeeecCCC-----cEEEEecCCCCCcccccCCCCCccccccCccCCcccceeeeeeeecCceeceE
Q 000944 1028 RWLTAAHHIDFDT-MAGADKFG-----NIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSL 1101 (1213)
Q Consensus 1028 ~~~~~~~~ld~~~-~l~~D~~g-----nl~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~lg~~v~~~ 1101 (1213)
.++.++.+-.++. ++.+..++ .+++++... +..+.....-.-+..+...
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-------------------------GRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-------------------------CCEEEEEEEEECSSCCCCC
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-------------------------CceeeEEEEccCCCeECcc
Q ss_pred EEeeecC--CCccEEEEEecccceEEEE
Q 000944 1102 QKASLVP--GGGESVIYGTVMGSLGAML 1127 (1213)
Q Consensus 1102 ~~~~~~~--~~~~~i~~~t~~Gsig~l~ 1127 (1213)
....+.+ .++ .++.+..+|.+....
T Consensus 313 ~~~~~sp~~dg~-~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 313 HPLTFLPGSNNQ-FIWQSRRDGWNHLYL 339 (706)
T ss_dssp SCCEECTTCSSE-EEEEECTTSSCEEEE
T ss_pred CCceeecCCCCE-EEEEEccCCccEEEE
No 211
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=27.22 E-value=6.2e+02 Score=27.30 Aligned_cols=124 Identities=10% Similarity=0.140 Sum_probs=67.2
Q ss_pred CcEEEEeCCCceeeeeCCCCccEEEEEecCCEEEEEEeCCEEEEEEEccCCCeEEeeeeccCc-ceEEEEeeecCCCcee
Q 000944 520 SGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSG-DVACLDIASVPEGRKR 598 (1213)
Q Consensus 520 ~~i~l~~~~~~~~~~~~~~~~~I~~as~~~~~v~v~~s~~~l~~l~~~~~~~l~~~~~~~l~~-~is~i~i~~~~~~~~~ 598 (1213)
..+..++.......|..+.+. .....+.+..+.+...++.++.+... +|+..-. ...+.. ..+...+ .
T Consensus 249 g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~-tG~~~w~-~~~~~~~~~~~~~~--------~ 317 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRELGS-VNDFIVDGNRIYLVDQNDRVMALTID-GGVTLWT-QSDLLHRLLTSPVL--------Y 317 (376)
T ss_dssp SCEEEEETTTCCEEEEECCCC-EEEEEEETTEEEEEETTCCEEEEETT-TCCEEEE-ECTTTTSCCCCCEE--------E
T ss_pred cEEEEEECCCCcEEeeccCCC-CCCceEECCEEEEEcCCCeEEEEECC-CCcEEEe-ecccCCCcccCCEE--------E
Confidence 456777765444557665433 45556678888888777888877543 4543211 111211 1222222 2
Q ss_pred eeEEEEEEeCCcEEEEEeCCCCceeEeEEeecCCC--CceeEEEEeecccCCCCCCCCCCceEEEEEeeCCeEEEEE
Q 000944 599 SRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSSP--PESLLFLEVQASVGGEDGADHPASLFLNAGLQNGVLFRTV 673 (1213)
Q Consensus 599 ~~~l~v~~~~~~i~i~sl~p~~~l~~~~~~~l~~~--p~Sl~~~~~~~~~~~~~~~~~~~~~~Lligl~~G~l~~~~ 673 (1213)
...+++++.+|.+..++.... .+ +....++.. ..+..+ ..-.|+++..+|.|+.|.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG-~~--~~~~~~~~~~~~~~~~~----------------~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDG-RF--VAQQKVDSSGFQTEPVA----------------ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CE--EEEEECCTTCBCSCCEE----------------ETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCC-cE--EEEEecCCCcceeCCEE----------------ECCEEEEEeCCCEEEEEe
Confidence 346888888898888876322 22 222222111 111111 123578999999997764
No 212
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=27.06 E-value=4.7e+02 Score=28.43 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=54.2
Q ss_pred eccccCeEEEEeC---CeEEEEecCCceeeceeeec-CccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeecc
Q 000944 949 LCQFQGRLLAGIG---PVLRLYDLGKKRLLRKCENK-LFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFADD 1024 (1213)
Q Consensus 949 i~~~~g~ll~~~g---~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D 1024 (1213)
+.+.+|+|..+-. .+|+.++++........... ..| ....++..+++|+++|.... .+.+++.+......+...
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P-nGla~d~~~~~lY~aD~~~~-~I~~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAVISQ 243 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCE-EEEEEETTTTEEEEEETTTT-EEEEEETTSCSCEEEECS
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCc-ceEEEeCCCCEEEEEECCCC-EEEEEeCCCCceEEEEeC
Confidence 3445777766542 56777777643322111111 112 23445556899999999876 455666554332222222
Q ss_pred CCCcceEEEEeecCCeeeeecCCC-cEEEEe
Q 000944 1025 SVPRWLTAAHHIDFDTMAGADKFG-NIYFVR 1054 (1213)
Q Consensus 1025 ~~~~~~~~~~~ld~~~~l~~D~~g-nl~il~ 1054 (1213)
. ..+...+.+ +++.+..+|... .|..+.
T Consensus 244 ~-~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 244 G-LPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp S-CSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred C-CCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 1 234444444 667777788644 444443
No 213
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=26.50 E-value=4e+02 Score=28.79 Aligned_cols=137 Identities=8% Similarity=-0.026 Sum_probs=73.1
Q ss_pred EEEEEEEEeCCceEEEEEEEe-ecCcceEeccccCeEEEEeCC------------eEEEEecCCceeeceeeecCccceE
Q 000944 921 YIHIYRFVEEGKSLELLHKTQ-VEGIPLALCQFQGRLLAGIGP------------VLRLYDLGKKRLLRKCENKLFPNTI 987 (1213)
Q Consensus 921 ri~v~~i~~~~~kl~~~~~~~-~~g~V~ai~~~~g~ll~~~g~------------~l~i~~~~~~~l~~~~~~~~~~~~i 987 (1213)
.++.|+......+.+.+.... .+-.-.+++.++++|++.-|. .+.+|++...++...+.....+-.-
T Consensus 32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~ 111 (357)
T 2uvk_A 32 AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG 111 (357)
T ss_dssp CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS
T ss_pred eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc
Confidence 467777653122555554322 122225566778888774443 4778888877776554332012222
Q ss_pred EEEEEeCCEEE-EeecCC-------------------------------------cEEEEEEeccCCeEEEeeccCCCcc
Q 000944 988 VSINTYRDRIY-VGDIQE-------------------------------------SFHFCKYRRDENQLYIFADDSVPRW 1029 (1213)
Q Consensus 988 ~~l~~~~~~I~-vgD~~~-------------------------------------Sv~~l~~~~~~~~l~~~a~D~~~~~ 1029 (1213)
.++.+.++.|+ +|=... .-.+..|+...++-..++.-+.++.
T Consensus 112 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 191 (357)
T 2uvk_A 112 HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT 191 (357)
T ss_dssp EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC
T ss_pred ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc
Confidence 33344666664 553211 1356778888888888876565554
Q ss_pred e-EEEEeecCCeeee-e-c----CCCcEEEEecCC
Q 000944 1030 L-TAAHHIDFDTMAG-A-D----KFGNIYFVRLPQ 1057 (1213)
Q Consensus 1030 ~-~~~~~ld~~~~l~-~-D----~~gnl~il~~~~ 1057 (1213)
. .++..+++.-++. + + ....++.|.+++
T Consensus 192 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~ 226 (357)
T 2uvk_A 192 AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTG 226 (357)
T ss_dssp BSCEEEEETTEEEEECCEEETTEECCCEEEEECC-
T ss_pred ccccEEEECCEEEEEeeecCCCcccCceEEEEecC
Confidence 4 4444555443433 2 1 234566676644
No 214
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=26.41 E-value=5.8e+02 Score=26.73 Aligned_cols=119 Identities=8% Similarity=0.049 Sum_probs=63.4
Q ss_pred EEEEEEEeecCcceEecc-ccCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-CCEEEEeecCC-cEEE
Q 000944 934 LELLHKTQVEGIPLALCQ-FQGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-RDRIYVGDIQE-SFHF 1008 (1213)
Q Consensus 934 l~~~~~~~~~g~V~ai~~-~~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~~~I~vgD~~~-Sv~~ 1008 (1213)
.+++.......-+..++. -+|.|+++- +++|+.|+.+.+ +...... +.....|... ++.++|+|... +..+
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceE
Confidence 334444332233334432 256776654 457777776543 3222222 2345566553 34588888653 5677
Q ss_pred EEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeecC-CCcEEEEecC
Q 000944 1009 CKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADK-FGNIYFVRLP 1056 (1213)
Q Consensus 1009 l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D~-~gnl~il~~~ 1056 (1213)
++|+....++..++.-...+............++++|. .|+|+.+...
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 78876666776665433223322222334445677885 7788777643
No 215
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=25.38 E-value=5.5e+02 Score=26.13 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=61.8
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEeccc-cCeEEEEe--CCeEEEEecCCceeeceeeecCccceEEEEEEe-C
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQF-QGRLLAGI--GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTY-R 994 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~~~-~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~ 994 (1213)
.|+|+.|+. ++ +++..........+.+++.- +|+++++. +..|+.|+. +.++........ ...+..|... +
T Consensus 119 ~~~i~~~d~--~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~ 193 (299)
T 2z2n_A 119 GNRIGRITD--DG-KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGND 193 (299)
T ss_dssp TTEEEEECT--TC-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTT
T ss_pred CceEEEECC--CC-CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCC
Confidence 356666654 22 33322211122446666654 57887765 357888887 444433211111 2245566554 3
Q ss_pred CEEEEeecCCcEEEEEEeccCCeEEEeeccCCCcceEEEEeecCCeeeeec-CCCcEEEEe
Q 000944 995 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGAD-KFGNIYFVR 1054 (1213)
Q Consensus 995 ~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D~~~~~~~~~~~ld~~~~l~~D-~~gnl~il~ 1054 (1213)
+.+++++...+ .+.+|+. ..++..+.-......+.++.+-.++.+.+++ ..+.|..+.
T Consensus 194 g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 194 DALWFVEIIGN-KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp SSEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred CCEEEEccCCc-eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 55888886543 3555666 4444443222112233333222223454454 345555554
No 216
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=24.17 E-value=6.6e+02 Score=26.60 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=65.7
Q ss_pred ccEEEEEEEEeCCceEEEEEEEeecCcceEec--cccCeEEEEe-C--CeEEEEecCCceeeceeeec-CccceEEEEEE
Q 000944 919 AGYIHIYRFVEEGKSLELLHKTQVEGIPLALC--QFQGRLLAGI-G--PVLRLYDLGKKRLLRKCENK-LFPNTIVSINT 992 (1213)
Q Consensus 919 ~Gri~v~~i~~~~~kl~~~~~~~~~g~V~ai~--~~~g~ll~~~-g--~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~ 992 (1213)
.++|.+++.+ +...+.+...... .+.+|+ +-+|+|+++- | .+|+.++++........... ..| ....++.
T Consensus 98 ~~~I~~~~~~--g~~~~~~~~~~~~-~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P-~gla~d~ 173 (316)
T 1ijq_A 98 LGTVSVADTK--GVKRKTLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDL 173 (316)
T ss_dssp TTEEEEEETT--SSSEEEEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE-EEEEEET
T ss_pred CCEEEEEeCC--CCceEEEEECCCC-CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCc-eEEEEec
Confidence 4566665543 3344444432222 334443 3577776654 3 47887877644321111111 112 2334444
Q ss_pred eCCEEEEeecCCcEEEEEEeccCCeEEEeecc-CCCcceEEEEeecCCeeeeecCCC-cEEEEe
Q 000944 993 YRDRIYVGDIQESFHFCKYRRDENQLYIFADD-SVPRWLTAAHHIDFDTMAGADKFG-NIYFVR 1054 (1213)
Q Consensus 993 ~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~D-~~~~~~~~~~~ld~~~~l~~D~~g-nl~il~ 1054 (1213)
.+++|++.|.... .+.+++.+......++.. ....+...+.+ +++.+..+|..+ .|..+.
T Consensus 174 ~~~~lY~~D~~~~-~I~~~d~dg~~~~~~~~~~~~~~~P~giav-~~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 174 LSGRLYWVDSKLH-SISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TTTEEEEEETTTT-EEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred cCCEEEEEECCCC-eEEEEecCCCceEEEeecCCccCCcEEEEE-ECCEEEEEECCCCeEEEEe
Confidence 5899999998764 244555554444444432 22233444433 567777788644 344443
No 217
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=23.82 E-value=8.5e+02 Score=27.76 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred eeEEEEEeCCCCceEEEEEcCCC-ceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCceEEEE
Q 000944 859 VSCIRVLDPRSANTTCLLELQDN-EAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELL 937 (1213)
Q Consensus 859 ~s~i~l~d~~~~~~~~~~~~~~~-E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~kl~~~ 937 (1213)
...|.++|..+++.+.++.+... ....- +.|.-.....+..|+...... + -.+.|.+|..+.+.++.+.+
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~---i~f~~~Pdg~~aYV~~e~~~~----~--Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALE---LRPLHDPTKLMGFINMVVSLK----D--LSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEE---EEECSSTTCCEEEEEEEEETT----T--CCEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccce---eEeeECCCCCEEEEEEeeecc----C--CCceEEEEEecCCceeEEEE
Confidence 34899999998888888888632 22222 223111334566666652211 1 24778888877532222222
Q ss_pred EE---Eeec--------------CcceEecc-ccC-eEEEEeC--CeEEEEecCCc---eeeceeeecC-----------
Q 000944 938 HK---TQVE--------------GIPLALCQ-FQG-RLLAGIG--PVLRLYDLGKK---RLLRKCENKL----------- 982 (1213)
Q Consensus 938 ~~---~~~~--------------g~V~ai~~-~~g-~ll~~~g--~~l~i~~~~~~---~l~~~~~~~~----------- 982 (1213)
.. ..+. +.+.+|.- -+| +|.++.- +.|.+|++.+. +++.......
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 11 1111 22333322 234 5555542 48999998632 3332221110
Q ss_pred ----ccceEEEEEEeCCEEEEeec-------C-----CcEEEEEE
Q 000944 983 ----FPNTIVSINTYRDRIYVGDI-------Q-----ESFHFCKY 1011 (1213)
Q Consensus 983 ----~~~~i~~l~~~~~~I~vgD~-------~-----~Sv~~l~~ 1011 (1213)
.| .-..++..+.+++|+.. + ++.+++++
T Consensus 378 ~~~ggP-r~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~ 421 (462)
T 2ece_A 378 KLTGAP-QMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKL 421 (462)
T ss_dssp CCCSCC-CCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEE
T ss_pred cCCCCC-CEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEE
Confidence 12 23456667889999883 3 56777755
No 218
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=23.16 E-value=6.8e+02 Score=26.42 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCceEEEEEcCCCceEEEEEEEEeccCCCceEEEEEeeecCccCCCCCCcccEEEEEEEEeCCc--eEEEE
Q 000944 860 SCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGK--SLELL 937 (1213)
Q Consensus 860 s~i~l~d~~~~~~~~~~~~~~~E~v~s~~~~~l~~~~~~~~i~VGT~~~~~~~~e~~~~~Gri~v~~i~~~~~--kl~~~ 937 (1213)
..+.++|+.+++.+..+.-.....+.++. +.. + .++++..+. .++|+.|+. ++. .+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia---~d~-~-g~l~v~d~~------------~~~v~~~~~--~g~~~~~~~~ 129 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLS---IDT-D-GNYWVTDVA------------LHQVFKLDP--HSKEGPLLIL 129 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEE---ECT-T-SCEEEEETT------------TTEEEEECT--TCSSCCSEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEE---ECC-C-CCEEEEECC------------CCEEEEEeC--CCCeEEEEEe
Confidence 47899999888876544322223455543 332 2 235554432 356766653 222 22222
Q ss_pred EEE-------eecCcceEeccc--cCeEEEEe---CCeEEEEecCCceeeceeeec--------CccceEEEEEEe--CC
Q 000944 938 HKT-------QVEGIPLALCQF--QGRLLAGI---GPVLRLYDLGKKRLLRKCENK--------LFPNTIVSINTY--RD 995 (1213)
Q Consensus 938 ~~~-------~~~g~V~ai~~~--~g~ll~~~---g~~l~i~~~~~~~l~~~~~~~--------~~~~~i~~l~~~--~~ 995 (1213)
... ..-..+..|+.- +|.|+++- +++|++|+.+.+.+....... .+ .....|.+. ++
T Consensus 130 ~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~-~~p~gia~d~~~g 208 (329)
T 3fvz_A 130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQF-SVPHSLALVPHLD 208 (329)
T ss_dssp SBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEE-SCEEEEEEETTTT
T ss_pred cccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCccc-CCCcEEEEECCCC
Confidence 110 111235555554 67887765 357888885443222111100 01 124455553 47
Q ss_pred EEEEeecCCcEEEEEEecc-CCeEEEeeccCCCcceEEE
Q 000944 996 RIYVGDIQESFHFCKYRRD-ENQLYIFADDSVPRWLTAA 1033 (1213)
Q Consensus 996 ~I~vgD~~~Sv~~l~~~~~-~~~l~~~a~D~~~~~~~~~ 1033 (1213)
.|+|+|...+ .+..|+.+ ...+..+........+.++
T Consensus 209 ~l~v~d~~~~-~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 209 QLCVADRENG-RIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEEEETTTT-EEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEEECCCC-EEEEEECCCCcEEEEEeccccCCCccee
Confidence 9999998876 34557766 3444444433333334433
No 219
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=22.74 E-value=7.2e+02 Score=26.50 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=58.5
Q ss_pred eEeccccCeEEEEe--CCeEEEEecCCceeeceeeec-CccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCeEEEeec
Q 000944 947 LALCQFQGRLLAGI--GPVLRLYDLGKKRLLRKCENK-LFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYIFAD 1023 (1213)
Q Consensus 947 ~ai~~~~g~ll~~~--g~~l~i~~~~~~~l~~~~~~~-~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~l~~~a~ 1023 (1213)
.++...++.|+++- +..|.+++++........... ..| ....+...+++|++.|....-.+.+++.+......+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP-RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE-EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCc-cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 34445678887764 357888888753221111111 112 23344445789999997655567777766544333332
Q ss_pred cCCCcceEEEEeec--CCeeeeecCC-CcEEEEecCC
Q 000944 1024 DSVPRWLTAAHHID--FDTMAGADKF-GNIYFVRLPQ 1057 (1213)
Q Consensus 1024 D~~~~~~~~~~~ld--~~~~l~~D~~-gnl~il~~~~ 1057 (1213)
+. -.+...+. +| .+.+..+|.. +.|..+.++.
T Consensus 163 ~~-l~~Pngla-vd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 163 SE-IYWPNGLT-LDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SS-CSCEEEEE-EETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC-CCCccEEE-EeccCCEEEEEECCCCEEEEEcCCC
Confidence 21 22333333 44 4567778874 4566666653
No 220
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=22.70 E-value=9.7e+02 Score=28.01 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=19.8
Q ss_pred eeeEEEEEeCCCCceEEEEEcCCC
Q 000944 858 WVSCIRVLDPRSANTTCLLELQDN 881 (1213)
Q Consensus 858 ~~s~i~l~d~~~~~~~~~~~~~~~ 881 (1213)
|.+++.-+|+.|++.+..++..++
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTT
T ss_pred eEEEEEEEecCCCcEEEEecCCCC
Confidence 345789999999999999988754
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.62 E-value=3.2e+02 Score=30.62 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=55.5
Q ss_pred cCeEEEEeC--CeEEEEecCCceeeceeeecCccceEEEEEEeCCEEEEeecCCcEEEEEEeccCCe-EEEeecc-C-CC
Q 000944 953 QGRLLAGIG--PVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQ-LYIFADD-S-VP 1027 (1213)
Q Consensus 953 ~g~ll~~~g--~~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~~~~I~vgD~~~Sv~~l~~~~~~~~-l~~~a~D-~-~~ 1027 (1213)
+|.|+++-. +.|+.|+.+..++.........+ . ..+...+++++++|....-.++.++.+... ...++.- . ..
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 455555433 57888888766655443322223 2 556667889999998765456667665432 2333110 0 11
Q ss_pred cceEEEEeec-CCeeeeecCCCcEEEEecC
Q 000944 1028 RWLTAAHHID-FDTMAGADKFGNIYFVRLP 1056 (1213)
Q Consensus 1028 ~~~~~~~~ld-~~~~l~~D~~gnl~il~~~ 1056 (1213)
.++.++.+-. ++.+.++|..+.|+.+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~ 248 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVK 248 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETT
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECC
Confidence 2222222222 3456668887777777654
No 222
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.46 E-value=80 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhc
Q 000944 1188 RKIADELDRTPGEILKKLEEIRNK 1211 (1213)
Q Consensus 1188 ~~i~~~~~~~~~~i~~~l~~l~~~ 1211 (1213)
..++++.|++.+++.+.|.+|.+|
T Consensus 29 ~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 29 EHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Confidence 367889999999999999999887
No 223
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=21.49 E-value=94 Score=27.69 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 000944 1184 LDLQRKIADELDRTPGEILKKLEEIRN 1210 (1213)
Q Consensus 1184 ~~~q~~i~~~~~~~~~~i~~~l~~l~~ 1210 (1213)
.+.+++||+..|++++|+.++|.+.+.
T Consensus 69 ~SR~~RIA~GSG~~v~eVn~LLkqf~~ 95 (105)
T 1hq1_A 69 GSRKRRIAAGSGMQVQDVNRLLKQFDD 95 (105)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999887653
No 224
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.07 E-value=7.5e+02 Score=26.10 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred eEEEEecCCceeeceeeecCccceEEEEEEe-CCEEEEeecCCcEEEEEEeccCC--eEEEeec-------cCCCcceEE
Q 000944 963 VLRLYDLGKKRLLRKCENKLFPNTIVSINTY-RDRIYVGDIQESFHFCKYRRDEN--QLYIFAD-------DSVPRWLTA 1032 (1213)
Q Consensus 963 ~l~i~~~~~~~l~~~~~~~~~~~~i~~l~~~-~~~I~vgD~~~Sv~~l~~~~~~~--~l~~~a~-------D~~~~~~~~ 1032 (1213)
+|++|+....++........+ .....|.+. ++.++++|.... .+.+|+.+.. .+..++. +........
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~-~~p~gia~d~~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLF-YLPHGLSIDTDGNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTC-SSEEEEEECTTSCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCcc-CCceEEEECCCCCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 588888876665432211111 133444443 344888888765 3666776554 4555543 222223444
Q ss_pred EEeec-CCeeeeecC--CCcEEEEe
Q 000944 1033 AHHID-FDTMAGADK--FGNIYFVR 1054 (1213)
Q Consensus 1033 ~~~ld-~~~~l~~D~--~gnl~il~ 1054 (1213)
+.+-. ++.++++|. .+.|.++.
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 44432 467788884 55566654
Done!