BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000945
(1212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 795 FPKHIFRNLKNLEVVN---DESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAE 851
P +F L NL +N ++ ++ G ++ NL +L+L SY ++ S E V +
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL---SYNQLQSLPEGV--FD 178
Query: 852 MLTQVKSLKLWE-------------LSDLMYIWKQDSKLDSITENLESLEVW 890
LTQ+K L+L++ L+ L YIW D+ D + L W
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N ++ GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N ++ GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N ++ GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 154
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N ++ GL L L +L TL +Q +PKG F L +
Sbjct: 155 SLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 203
Query: 379 IGDEW 383
G+ W
Sbjct: 204 HGNPW 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N ++ GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNNLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N + GL G L +L TL +Q +PKG F L +
Sbjct: 154 SLANNQLTELPAGLLNG-----------LENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N + GL G L +L TL +Q +PKG F L +
Sbjct: 154 SLANNQLTELPAGLLNG-----------LENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N + GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNQLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N + GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNDLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 263 LDKKLEILSLVDSNIEQLPE----EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDL 318
L + L L+++D + +L + L +L+ L G ++LK +PP LL+ +LE L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKL 153
Query: 319 YMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIF 378
+ N + GL L L +L TL +Q +PKG F L +
Sbjct: 154 SLANNQLTELPAGL-----------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202
Query: 379 IGDEW 383
G+ W
Sbjct: 203 HGNPW 207
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 53/253 (20%)
Query: 281 PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVK----------WEFE 330
P L LR L ++LK+IP + +GLS L L + + + +
Sbjct: 73 PGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 331 GLNVGRSNASLQELKLLSHLTTLE---IQICDAMILP-------KGLFSKKLERYKIFIG 380
L VG ++ + S L +LE ++ C+ +P GL +L I
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI--- 188
Query: 381 DEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQL 440
+ +Y KR+ +LK+ L+ YLD + N LY L++ L +
Sbjct: 189 ---NAIRDYSFKRLYRLKV-----------LEISHWPYLDTM--TPNCLYGLNLTS-LSI 231
Query: 441 KHLHVQNNPFILFIVDSMAWVR-----YNAFLLLESLVLHNLIHLEKICL--GQL---RA 490
H ++ P++ V + ++R YN +E +LH L+ L++I L GQL
Sbjct: 232 THCNLTAVPYL--AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 491 ESFYKLKIIKVRN 503
+F L ++V N
Sbjct: 290 YAFRGLNYLRVLN 302
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 101 NLMNRYQLSKKAAWEVKAIAGLLEEGKFD-EVSFCTKPEGILLMCSEGY 148
++MN Y+ K +E A+AGL G F ++ + EGI+ MC+ Y
Sbjct: 72 DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMY 120
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 101 NLMNRYQLSKKAAWEVKAIAGLLEEGKFD-EVSFCTKPEGILLMCSEGY 148
++MN Y+ K +E A+AGL G F ++ + EGI+ MC+ Y
Sbjct: 71 DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMY 119
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 26/132 (19%)
Query: 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN---DESENFRIGFLERFHNLEKLE 831
+ L +L L G + + P +F L +L +N ++ ++ G ++ L++L
Sbjct: 52 TSLTQLYLGGNKLQSL-----PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 832 LRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWE-------------LSDLMYIWKQDSKLD 878
L + + + + LTQ+K L+L++ L+ L YIW D+ D
Sbjct: 107 LNTNQLQSLPDGV-----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 879 SITENLESLEVW 890
+ L W
Sbjct: 162 CTCPGIRYLSEW 173
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 275 SNIEQLPEEMAQLTQLRLFDLSGCSKLKVIP 305
SN+ LP ++ +LTQL DL GC L +P
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 255 DNIWTSLDLDK-----------KLEILS---LVDSNIEQLPEEMAQLTQLRLFDLSGCSK 300
D +W +LDL K + L+ L +++ +LP E+ L+ LR+ DLS ++
Sbjct: 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NR 281
Query: 301 LKVIPPNLLSGLSRLEDLYMGN--TSVKWEFEGL 332
L +P L S + N T++ WEF L
Sbjct: 282 LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
>pdb|3L9B|A Chain A, Crystal Structure Of Rat Otoferlin C2a
Length = 144
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 801 RNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLK 860
R L+N E V D E FR E LE++ +Y ++FSN+ I +L +V
Sbjct: 53 RVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN 112
Query: 861 LWELSDLM 868
E+SD +
Sbjct: 113 RVEVSDTL 120
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 267 LEILSLVDSNIEQ--LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 324
LE+L + ++ ++ LP+ +L L DLS C +L+ + P + LS L+ L M +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 325 VKWEFEGL 332
+K +G+
Sbjct: 506 LKSVPDGI 513
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 158 LNDALDALSNPNVNVI-GLCGLGGIGKTTLAKI----VFYQAKKLKLCDEVVFVEVSQTP 212
LN L +VN+I G G GIGKTTLAK V A K L + +V P
Sbjct: 39 LNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98
Query: 213 DVKRIQGDIADQLG 226
++ I I Q G
Sbjct: 99 NLYTILSLIVRQTG 112
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 266 KLEILSLVDSNIEQLPEEMAQ-LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 324
KLE L L + +++LPE+M + L +LR+ + +++ + ++ +GL+++ + +G
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 325 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICD-AMILPKGLFSKKLERYKIFIGDEW 383
+K G N + Q +K LS++ + I LP L L+ KI D
Sbjct: 157 LKSS------GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210
Query: 384 DWSG-NYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLD-----EVPGIKNVLYDLDIEGF 437
G N K L ++ + + + EL+L+ +VPG L +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG------GLADHKY 264
Query: 438 LQLKHLHVQN 447
+Q+ +LH N
Sbjct: 265 IQVVYLHNNN 274
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 18/105 (17%)
Query: 266 KLEILSLVDSNIEQLPEEMAQ-LTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTS 324
KLE L L + +++LPE+M + L +LR+ + +++ + ++ +GL+++ + +G
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHE----NEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 325 VKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAMI--LPKGL 367
+K G N + Q +K LS+ I+I D I +P+GL
Sbjct: 157 LKSS------GIENGAFQGMKKLSY-----IRIADTNITTIPQGL 190
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 270 LSLVDSNIEQLPEE-MAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWE 328
L L + + LP + +LT+LRL L+ +KL+ +P + L LE L++ T K +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWV--TDNKLQ 98
Query: 329 FEGLNVGRSNASLQELKL---------------LSHLTTLEIQICDAMILPKGLFSK 370
+ V +L EL+L L+ LT L + + LPKG+F K
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,555,528
Number of Sequences: 62578
Number of extensions: 1266449
Number of successful extensions: 2800
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 60
length of query: 1212
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1102
effective length of database: 8,089,757
effective search space: 8914912214
effective search space used: 8914912214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)