Query 000945
Match_columns 1212
No_of_seqs 841 out of 5429
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 11:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.4E-44 1.4E-48 432.8 27.0 681 30-745 22-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-42 5.6E-47 445.8 32.9 301 617-1006 610-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4.2E-32 9.2E-37 353.5 24.3 82 266-361 70-153 (968)
4 PLN00113 leucine-rich repeat r 100.0 6.7E-31 1.5E-35 342.3 23.9 520 288-982 69-590 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.4E-25 245.3 23.4 270 617-949 633-910 (1153)
6 KOG0472 Leucine-rich repeat pr 99.9 3E-24 6.4E-29 221.8 -9.8 277 617-943 251-539 (565)
7 KOG4194 Membrane glycoprotein 99.8 1.7E-21 3.7E-26 210.6 6.4 229 266-686 79-308 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 1.2E-23 2.7E-28 217.2 -15.4 488 266-1001 46-540 (565)
9 KOG0444 Cytoskeletal regulator 99.8 4.3E-22 9.3E-27 216.1 -4.5 182 800-1006 196-379 (1255)
10 KOG4194 Membrane glycoprotein 99.8 6.2E-21 1.4E-25 206.3 4.4 346 468-915 79-425 (873)
11 KOG0618 Serine/threonine phosp 99.8 1.2E-21 2.6E-26 223.8 -3.4 88 266-367 46-133 (1081)
12 KOG0444 Cytoskeletal regulator 99.8 2.5E-21 5.5E-26 210.1 -4.1 158 487-681 25-184 (1255)
13 KOG0618 Serine/threonine phosp 99.8 2.1E-21 4.6E-26 221.9 -5.0 256 623-940 183-460 (1081)
14 PF00931 NB-ARC: NB-ARC domain 99.6 5.6E-16 1.2E-20 172.0 11.7 111 154-265 1-118 (287)
15 PRK15387 E3 ubiquitin-protein 99.4 2.9E-13 6.3E-18 162.2 12.0 256 644-1000 201-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.4 3.9E-13 8.4E-18 161.2 12.1 256 618-974 201-456 (788)
17 KOG1603 Copper chaperone [Inor 99.4 4.8E-13 1E-17 110.7 9.0 67 1115-1181 3-70 (73)
18 PRK15370 E3 ubiquitin-protein 99.3 3.2E-12 6.8E-17 154.7 7.5 120 671-840 179-298 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 7.8E-12 1.7E-16 151.4 9.4 247 618-943 178-426 (754)
20 KOG4237 Extracellular matrix p 99.2 1.4E-13 3.1E-18 143.5 -6.0 53 775-833 444-496 (498)
21 KOG4341 F-box protein containi 99.0 1.3E-11 2.8E-16 130.4 -4.4 117 618-741 138-255 (483)
22 KOG0617 Ras suppressor protein 99.0 2.5E-11 5.5E-16 111.7 -3.4 64 467-538 127-190 (264)
23 PF00403 HMA: Heavy-metal-asso 98.9 6.3E-09 1.4E-13 84.0 7.4 57 1120-1176 1-61 (62)
24 KOG4237 Extracellular matrix p 98.8 1.5E-10 3.4E-15 121.2 -3.9 130 496-654 69-198 (498)
25 KOG0617 Ras suppressor protein 98.8 2.1E-10 4.6E-15 105.7 -2.6 159 800-982 32-191 (264)
26 KOG4341 F-box protein containi 98.8 1.9E-10 4.1E-15 121.8 -4.7 92 438-533 138-229 (483)
27 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.3E-13 126.5 6.4 106 617-737 544-651 (889)
28 cd00116 LRR_RI Leucine-rich re 98.6 9E-09 2E-13 116.6 0.9 64 879-943 218-289 (319)
29 PRK09376 rho transcription ter 98.6 1.1E-07 2.4E-12 103.3 8.7 99 161-260 159-268 (416)
30 cd01128 rho_factor Transcripti 98.6 7.3E-08 1.6E-12 101.2 7.0 92 169-261 15-116 (249)
31 COG2608 CopZ Copper chaperone 98.5 3.2E-07 6.9E-12 75.4 7.4 65 1116-1180 1-69 (71)
32 KOG3207 Beta-tubulin folding c 98.4 2.7E-08 5.9E-13 106.4 -1.4 191 774-974 120-312 (505)
33 cd00116 LRR_RI Leucine-rich re 98.4 5.9E-08 1.3E-12 109.9 0.2 241 774-1025 22-290 (319)
34 KOG3207 Beta-tubulin folding c 98.3 8.5E-08 1.8E-12 102.7 -0.9 64 774-839 221-285 (505)
35 PRK15386 type III secretion pr 98.3 7.8E-07 1.7E-11 98.1 6.4 62 823-899 50-111 (426)
36 PRK15386 type III secretion pr 98.3 2.1E-06 4.5E-11 94.8 8.6 133 852-1022 50-186 (426)
37 TIGR00767 rho transcription te 98.2 3.7E-06 8E-11 92.3 9.7 91 169-260 167-267 (415)
38 KOG1259 Nischarin, modulator o 98.2 8.4E-07 1.8E-11 89.9 3.8 54 802-863 285-338 (490)
39 KOG4656 Copper chaperone for s 98.1 8.8E-06 1.9E-10 77.2 8.2 68 1117-1184 7-74 (247)
40 PRK00411 cdc6 cell division co 98.1 2.4E-05 5.1E-10 91.2 14.0 114 148-261 29-151 (394)
41 TIGR02928 orc1/cdc6 family rep 98.1 3E-05 6.5E-10 89.3 13.2 112 149-260 15-141 (365)
42 PTZ00202 tuzin; Provisional 98.0 0.00024 5.2E-09 78.0 18.2 104 143-255 256-368 (550)
43 PF14580 LRR_9: Leucine-rich r 98.0 5E-06 1.1E-10 81.8 5.0 83 853-943 41-124 (175)
44 KOG2120 SCF ubiquitin ligase, 98.0 2.3E-07 4.9E-12 94.1 -4.8 137 854-1000 234-374 (419)
45 PF13401 AAA_22: AAA domain; P 98.0 2E-05 4.3E-10 75.5 8.1 91 170-260 4-99 (131)
46 TIGR03015 pepcterm_ATPase puta 98.0 5.7E-05 1.2E-09 82.8 12.7 92 167-261 40-136 (269)
47 PF14580 LRR_9: Leucine-rich r 97.9 5.2E-06 1.1E-10 81.7 3.3 60 775-838 42-101 (175)
48 PF13855 LRR_8: Leucine rich r 97.9 5.1E-06 1.1E-10 66.7 2.2 59 266-325 2-61 (61)
49 KOG0532 Leucine-rich repeat (L 97.9 1.4E-06 3.1E-11 96.4 -2.1 169 804-1025 78-246 (722)
50 PF13855 LRR_8: Leucine rich r 97.8 1.6E-05 3.4E-10 63.8 3.4 58 802-864 2-59 (61)
51 PRK11331 5-methylcytosine-spec 97.8 9.8E-05 2.1E-09 82.9 10.3 70 149-220 175-244 (459)
52 KOG0532 Leucine-rich repeat (L 97.8 1.8E-06 3.8E-11 95.8 -4.1 129 774-921 120-248 (722)
53 KOG1259 Nischarin, modulator o 97.7 1.6E-05 3.4E-10 80.9 2.4 128 824-974 283-410 (490)
54 cd00009 AAA The AAA+ (ATPases 97.7 0.00022 4.8E-09 70.0 10.3 58 153-212 2-59 (151)
55 KOG2120 SCF ubiquitin ligase, 97.7 3.9E-06 8.4E-11 85.4 -2.5 62 618-681 286-349 (419)
56 PF05729 NACHT: NACHT domain 97.5 0.00021 4.6E-09 71.7 7.9 87 171-262 1-95 (166)
57 PRK08118 topology modulation p 97.5 6.4E-05 1.4E-09 74.6 2.9 35 171-205 2-37 (167)
58 COG4886 Leucine-rich repeat (L 97.5 5E-05 1.1E-09 88.5 2.4 62 776-841 117-179 (394)
59 PF01637 Arch_ATPase: Archaeal 97.4 0.00016 3.5E-09 77.5 5.0 45 151-195 1-45 (234)
60 PLN02957 copper, zinc superoxi 97.3 0.001 2.2E-08 70.0 9.7 72 1116-1187 5-76 (238)
61 KOG1947 Leucine rich repeat pr 97.3 1.5E-05 3.2E-10 96.4 -5.2 14 727-740 268-281 (482)
62 COG4886 Leucine-rich repeat (L 97.3 0.00022 4.9E-09 83.1 4.8 154 776-949 141-294 (394)
63 COG1474 CDC6 Cdc6-related prot 97.2 0.0027 5.8E-08 71.2 12.5 111 151-262 19-137 (366)
64 TIGR02903 spore_lon_C ATP-depe 97.2 0.018 3.8E-07 70.0 20.1 63 147-209 152-217 (615)
65 PF13191 AAA_16: AAA ATPase do 97.2 0.00081 1.8E-08 68.9 7.5 47 151-197 2-51 (185)
66 PRK13342 recombination factor 97.2 0.00093 2E-08 77.5 8.8 49 147-195 10-61 (413)
67 PF12799 LRR_4: Leucine Rich r 97.2 0.00027 5.9E-09 51.6 2.3 40 266-306 2-41 (44)
68 KOG1947 Leucine rich repeat pr 97.1 4.4E-05 9.6E-10 92.2 -4.1 119 617-742 187-309 (482)
69 PTZ00112 origin recognition co 97.0 0.0047 1E-07 74.0 12.2 112 149-260 755-881 (1164)
70 KOG2982 Uncharacterized conser 97.0 0.00029 6.3E-09 72.2 1.9 217 777-1008 47-268 (418)
71 PLN03150 hypothetical protein; 96.9 0.001 2.2E-08 81.3 6.1 39 878-916 462-500 (623)
72 PRK10671 copA copper exporting 96.9 0.002 4.3E-08 82.1 8.2 66 1115-1182 1-67 (834)
73 PF13173 AAA_14: AAA domain 96.9 0.0017 3.7E-08 61.5 5.8 82 170-270 2-83 (128)
74 KOG2543 Origin recognition com 96.8 0.0075 1.6E-07 64.8 10.6 73 149-226 6-81 (438)
75 COG2256 MGS1 ATPase related to 96.8 0.0043 9.4E-08 67.3 8.6 76 162-261 40-117 (436)
76 KOG1909 Ran GTPase-activating 96.8 0.00045 9.7E-09 72.9 1.2 164 774-943 91-281 (382)
77 KOG3665 ZYG-1-like serine/thre 96.8 0.00018 3.9E-09 87.2 -1.9 131 774-915 121-259 (699)
78 PRK06893 DNA replication initi 96.8 0.0018 4E-08 68.3 5.7 39 169-209 38-76 (229)
79 KOG1859 Leucine-rich repeat pr 96.8 0.00058 1.3E-08 78.5 1.7 85 266-366 188-272 (1096)
80 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0035 7.6E-08 66.6 7.4 55 153-209 21-75 (226)
81 PLN03150 hypothetical protein; 96.7 0.0018 3.9E-08 79.2 5.4 88 856-949 420-507 (623)
82 KOG1859 Leucine-rich repeat pr 96.6 9.9E-05 2.1E-09 84.5 -6.0 103 799-916 185-289 (1096)
83 PRK13341 recombination factor 96.5 0.0045 9.7E-08 75.8 7.5 50 146-195 25-77 (725)
84 KOG1909 Ran GTPase-activating 96.5 0.00046 1E-08 72.8 -0.8 92 436-531 211-309 (382)
85 KOG2028 ATPase related to the 96.5 0.0049 1.1E-07 65.3 6.4 55 166-224 158-212 (554)
86 PF12799 LRR_4: Leucine Rich r 96.5 0.0025 5.4E-08 46.6 3.0 39 802-841 2-40 (44)
87 PRK07261 topology modulation p 96.5 0.0091 2E-07 59.7 8.0 34 172-205 2-36 (171)
88 PRK14722 flhF flagellar biosyn 96.4 0.22 4.8E-06 55.8 19.2 87 170-259 137-226 (374)
89 PRK12727 flagellar biosynthesi 96.4 0.088 1.9E-06 60.9 16.3 88 169-258 349-438 (559)
90 KOG0531 Protein phosphatase 1, 96.4 0.00079 1.7E-08 78.5 -0.5 176 614-838 91-268 (414)
91 TIGR00635 ruvB Holliday juncti 96.3 0.017 3.7E-07 64.5 10.1 48 148-195 3-55 (305)
92 PRK04195 replication factor C 96.3 0.0092 2E-07 70.8 8.3 51 145-195 10-64 (482)
93 PRK08116 hypothetical protein; 96.3 0.015 3.2E-07 62.8 9.0 75 171-259 115-189 (268)
94 PLN03025 replication factor C 96.3 0.018 4E-07 64.3 10.1 50 145-194 9-58 (319)
95 PF05496 RuvB_N: Holliday junc 96.2 0.0055 1.2E-07 61.9 4.8 51 145-195 20-75 (233)
96 KOG1644 U2-associated snRNP A' 96.2 0.0057 1.2E-07 59.7 4.7 84 774-865 41-124 (233)
97 KOG3665 ZYG-1-like serine/thre 96.2 0.0014 3.1E-08 79.6 0.7 13 669-681 121-133 (699)
98 smart00382 AAA ATPases associa 96.2 0.015 3.2E-07 56.4 7.7 89 171-262 3-92 (148)
99 PF13207 AAA_17: AAA domain; P 96.2 0.0046 1E-07 58.0 3.7 23 172-194 1-23 (121)
100 PF04665 Pox_A32: Poxvirus A32 96.1 0.025 5.3E-07 58.8 9.1 36 171-208 14-49 (241)
101 PRK12402 replication factor C 96.1 0.02 4.3E-07 65.2 9.3 49 147-195 13-61 (337)
102 PRK12377 putative replication 96.1 0.019 4.1E-07 60.7 8.1 76 169-260 100-175 (248)
103 PRK08727 hypothetical protein; 96.1 0.024 5.1E-07 60.0 9.0 40 167-208 38-77 (233)
104 PRK08084 DNA replication initi 96.1 0.024 5.1E-07 60.1 8.8 53 155-209 30-82 (235)
105 PRK12608 transcription termina 96.0 0.044 9.5E-07 60.6 10.9 101 159-260 121-232 (380)
106 TIGR02639 ClpA ATP-dependent C 96.0 0.024 5.2E-07 70.9 10.1 50 146-195 179-228 (731)
107 PRK00440 rfc replication facto 96.0 0.034 7.4E-07 62.7 10.6 50 146-195 14-63 (319)
108 PF00308 Bac_DnaA: Bacterial d 96.0 0.027 5.8E-07 58.9 8.9 78 169-261 33-110 (219)
109 PF05659 RPW8: Arabidopsis bro 95.9 0.11 2.5E-06 49.5 11.8 113 2-125 3-116 (147)
110 PF05621 TniB: Bacterial TniB 95.9 0.082 1.8E-06 56.4 11.9 92 168-260 59-157 (302)
111 CHL00095 clpC Clp protease ATP 95.9 0.026 5.7E-07 71.5 9.6 48 148-195 178-225 (821)
112 COG1484 DnaC DNA replication p 95.8 0.045 9.7E-07 58.4 9.8 76 169-260 104-179 (254)
113 COG1618 Predicted nucleotide k 95.8 0.012 2.7E-07 55.3 4.6 36 171-207 6-41 (179)
114 KOG2982 Uncharacterized conser 95.8 0.0047 1E-07 63.7 1.9 119 769-893 91-210 (418)
115 PRK07952 DNA replication prote 95.7 0.072 1.6E-06 56.2 10.6 76 170-260 99-174 (244)
116 KOG2227 Pre-initiation complex 95.7 0.091 2E-06 58.4 11.3 115 147-261 148-269 (529)
117 smart00763 AAA_PrkA PrkA AAA d 95.7 0.015 3.3E-07 63.8 5.4 46 150-195 52-103 (361)
118 PRK08939 primosomal protein Dn 95.7 0.056 1.2E-06 59.4 9.8 91 153-260 135-229 (306)
119 cd01133 F1-ATPase_beta F1 ATP 95.6 0.071 1.5E-06 56.6 10.1 91 169-261 68-176 (274)
120 PRK04841 transcriptional regul 95.6 0.05 1.1E-06 71.4 11.0 101 150-260 15-133 (903)
121 TIGR03689 pup_AAA proteasome A 95.6 0.044 9.6E-07 63.9 9.1 52 144-195 177-241 (512)
122 TIGR00362 DnaA chromosomal rep 95.5 0.029 6.3E-07 65.2 7.7 76 170-260 136-211 (405)
123 PRK06921 hypothetical protein; 95.5 0.052 1.1E-06 58.4 9.0 72 169-258 116-187 (266)
124 PRK05564 DNA polymerase III su 95.5 0.031 6.8E-07 62.3 7.6 68 149-216 4-77 (313)
125 PRK06696 uridine kinase; Valid 95.5 0.018 3.9E-07 60.6 5.3 43 153-195 2-47 (223)
126 PF00004 AAA: ATPase family as 95.5 0.029 6.3E-07 53.5 6.3 23 173-195 1-23 (132)
127 PF01695 IstB_IS21: IstB-like 95.5 0.043 9.2E-07 55.1 7.5 74 170-260 47-120 (178)
128 PRK05703 flhF flagellar biosyn 95.5 0.59 1.3E-05 54.1 17.7 39 170-208 221-259 (424)
129 PTZ00301 uridine kinase; Provi 95.4 0.02 4.2E-07 59.0 5.1 26 170-195 3-28 (210)
130 PRK00080 ruvB Holliday junctio 95.4 0.017 3.6E-07 65.0 4.8 50 146-195 22-76 (328)
131 TIGR03499 FlhF flagellar biosy 95.2 0.09 2E-06 57.3 9.7 28 169-196 193-220 (282)
132 PRK12422 chromosomal replicati 95.2 0.057 1.2E-06 62.7 8.5 74 170-260 141-214 (445)
133 PRK08181 transposase; Validate 95.2 0.064 1.4E-06 57.5 8.2 74 170-260 106-179 (269)
134 PRK14088 dnaA chromosomal repl 95.2 0.053 1.2E-06 63.2 8.2 76 170-260 130-206 (440)
135 TIGR01242 26Sp45 26S proteasom 95.2 0.071 1.5E-06 61.0 9.1 52 144-195 117-181 (364)
136 PRK14949 DNA polymerase III su 95.2 0.071 1.5E-06 65.4 9.2 50 146-195 13-63 (944)
137 PRK14962 DNA polymerase III su 95.1 0.097 2.1E-06 61.2 10.1 50 146-195 11-61 (472)
138 KOG2004 Mitochondrial ATP-depe 95.1 0.23 5E-06 58.2 12.7 46 150-195 412-463 (906)
139 PRK14957 DNA polymerase III su 95.1 0.084 1.8E-06 62.4 9.6 49 146-194 13-62 (546)
140 PRK06995 flhF flagellar biosyn 95.0 0.83 1.8E-05 53.1 17.0 44 170-214 256-299 (484)
141 PRK05642 DNA replication initi 95.0 0.036 7.8E-07 58.7 5.7 65 170-260 45-109 (234)
142 PRK14087 dnaA chromosomal repl 95.0 0.076 1.7E-06 61.9 8.8 78 170-260 141-218 (450)
143 PRK10865 protein disaggregatio 95.0 0.096 2.1E-06 66.4 10.3 49 146-194 175-223 (857)
144 COG0466 Lon ATP-dependent Lon 95.0 0.29 6.3E-06 57.7 13.0 45 151-195 325-375 (782)
145 PRK14955 DNA polymerase III su 95.0 0.081 1.8E-06 61.0 8.8 49 147-195 14-63 (397)
146 PRK07667 uridine kinase; Provi 95.0 0.029 6.3E-07 57.5 4.6 38 158-195 3-42 (193)
147 PRK06547 hypothetical protein; 94.9 0.036 7.9E-07 55.1 5.1 35 160-194 5-39 (172)
148 PF13238 AAA_18: AAA domain; P 94.9 0.022 4.7E-07 54.1 3.5 22 173-194 1-22 (129)
149 COG1428 Deoxynucleoside kinase 94.9 0.02 4.4E-07 56.9 3.1 26 170-195 4-29 (216)
150 PF00485 PRK: Phosphoribulokin 94.9 0.024 5.2E-07 58.2 3.9 24 172-195 1-24 (194)
151 PRK00771 signal recognition pa 94.9 1.6 3.5E-05 50.4 18.7 86 169-258 94-185 (437)
152 PRK06835 DNA replication prote 94.8 3.3 7.2E-05 46.0 20.5 76 170-260 183-258 (329)
153 PRK06526 transposase; Provisio 94.8 0.074 1.6E-06 56.7 7.2 26 170-195 98-123 (254)
154 PRK11034 clpA ATP-dependent Cl 94.8 0.091 2E-06 65.0 8.9 47 148-194 185-231 (758)
155 PRK14951 DNA polymerase III su 94.7 0.11 2.5E-06 62.2 9.5 48 147-194 14-62 (618)
156 TIGR02237 recomb_radB DNA repa 94.7 0.11 2.5E-06 54.1 8.6 49 169-220 11-59 (209)
157 TIGR00235 udk uridine kinase. 94.7 0.026 5.6E-07 58.7 3.4 27 169-195 5-31 (207)
158 PRK09270 nucleoside triphospha 94.6 0.047 1E-06 57.8 5.4 28 168-195 31-58 (229)
159 PRK09183 transposase/IS protei 94.6 0.15 3.3E-06 54.7 9.3 26 170-195 102-127 (259)
160 PHA00729 NTP-binding motif con 94.6 0.046 1E-06 56.1 5.0 36 159-194 6-41 (226)
161 PRK05480 uridine/cytidine kina 94.6 0.033 7.1E-07 58.1 4.0 27 168-194 4-30 (209)
162 PRK14963 DNA polymerase III su 94.6 0.036 7.7E-07 65.3 4.7 63 147-209 12-75 (504)
163 PRK05541 adenylylsulfate kinas 94.5 0.043 9.4E-07 55.4 4.6 36 169-206 6-41 (176)
164 PRK00149 dnaA chromosomal repl 94.5 0.2 4.4E-06 59.0 10.9 74 170-260 148-223 (450)
165 TIGR03346 chaperone_ClpB ATP-d 94.4 0.16 3.4E-06 64.8 10.4 49 147-195 171-219 (852)
166 COG0572 Udk Uridine kinase [Nu 94.4 0.036 7.9E-07 56.1 3.7 27 169-195 7-33 (218)
167 PRK07003 DNA polymerase III su 94.4 0.2 4.2E-06 60.4 10.2 50 146-195 13-63 (830)
168 PRK14723 flhF flagellar biosyn 94.4 1.9 4.2E-05 52.9 18.7 86 170-258 185-273 (767)
169 PRK15455 PrkA family serine pr 94.4 0.05 1.1E-06 63.0 5.2 46 150-195 77-128 (644)
170 cd02025 PanK Pantothenate kina 94.4 0.19 4.2E-06 52.5 9.2 24 172-195 1-24 (220)
171 COG2255 RuvB Holliday junction 94.3 0.06 1.3E-06 55.8 5.0 52 145-196 22-78 (332)
172 PRK08691 DNA polymerase III su 94.3 0.19 4.1E-06 60.3 9.8 49 146-194 13-62 (709)
173 KOG4579 Leucine-rich repeat (L 94.3 0.014 3E-07 53.2 0.4 88 267-367 29-119 (177)
174 PRK06645 DNA polymerase III su 94.2 0.24 5.2E-06 58.2 10.5 50 146-195 18-68 (507)
175 cd02019 NK Nucleoside/nucleoti 94.2 0.04 8.6E-07 45.3 2.9 23 172-194 1-23 (69)
176 KOG4579 Leucine-rich repeat (L 94.2 0.015 3.3E-07 53.0 0.4 88 266-367 54-142 (177)
177 PRK06851 hypothetical protein; 94.2 0.48 1E-05 53.0 12.0 57 146-210 197-253 (367)
178 PRK14954 DNA polymerase III su 94.2 0.17 3.6E-06 61.1 9.1 50 146-195 13-63 (620)
179 PRK09361 radB DNA repair and r 94.1 0.23 5.1E-06 52.4 9.3 47 169-218 22-68 (225)
180 PRK08233 hypothetical protein; 94.1 0.04 8.7E-07 56.1 3.3 25 170-194 3-27 (182)
181 PRK14960 DNA polymerase III su 94.1 0.21 4.6E-06 59.3 9.5 49 146-194 12-61 (702)
182 KOG0531 Protein phosphatase 1, 94.0 0.022 4.7E-07 66.5 1.4 84 266-365 96-179 (414)
183 cd01123 Rad51_DMC1_radA Rad51_ 94.0 0.16 3.4E-06 54.2 7.9 51 169-219 18-72 (235)
184 TIGR03345 VI_ClpV1 type VI sec 94.0 0.069 1.5E-06 67.5 5.7 51 145-195 183-233 (852)
185 PRK12323 DNA polymerase III su 94.0 0.23 5E-06 58.9 9.5 50 146-195 13-63 (700)
186 PF03205 MobB: Molybdopterin g 93.9 0.12 2.5E-06 49.5 5.9 39 171-210 1-39 (140)
187 PRK06762 hypothetical protein; 93.9 0.05 1.1E-06 54.3 3.6 24 171-194 3-26 (166)
188 PRK14964 DNA polymerase III su 93.9 0.33 7.2E-06 56.6 10.6 48 146-193 10-58 (491)
189 PRK11889 flhF flagellar biosyn 93.9 0.29 6.3E-06 54.4 9.4 27 169-195 240-266 (436)
190 PRK10536 hypothetical protein; 93.9 0.14 3E-06 53.6 6.7 55 146-202 52-106 (262)
191 TIGR02012 tigrfam_recA protein 93.8 0.24 5.3E-06 54.3 8.8 85 169-260 54-145 (321)
192 cd01120 RecA-like_NTPases RecA 93.8 0.33 7.2E-06 48.1 9.5 40 172-213 1-40 (165)
193 PRK10865 protein disaggregatio 93.8 2.3 5E-05 54.2 18.7 45 150-194 569-622 (857)
194 PRK14958 DNA polymerase III su 93.8 0.27 5.9E-06 58.2 9.9 50 146-195 13-63 (509)
195 cd00983 recA RecA is a bacter 93.8 0.24 5.2E-06 54.3 8.6 85 169-260 54-145 (325)
196 PF00154 RecA: recA bacterial 93.7 0.27 5.9E-06 53.7 8.9 85 169-260 52-143 (322)
197 PHA02544 44 clamp loader, smal 93.7 0.086 1.9E-06 59.2 5.3 51 144-194 16-67 (316)
198 cd03115 SRP The signal recogni 93.7 0.31 6.6E-06 49.0 8.8 24 172-195 2-25 (173)
199 cd01393 recA_like RecA is a b 93.6 0.51 1.1E-05 49.9 10.9 49 169-219 18-72 (226)
200 KOG1532 GTPase XAB1, interacts 93.6 0.07 1.5E-06 54.6 3.8 63 169-231 18-89 (366)
201 PRK07994 DNA polymerase III su 93.6 0.26 5.6E-06 59.4 9.3 50 146-195 13-63 (647)
202 PRK04040 adenylate kinase; Pro 93.6 0.065 1.4E-06 54.3 3.6 25 171-195 3-27 (188)
203 PRK03839 putative kinase; Prov 93.5 0.059 1.3E-06 54.6 3.4 24 172-195 2-25 (180)
204 PRK09354 recA recombinase A; P 93.5 0.23 5E-06 54.9 7.9 85 169-260 59-150 (349)
205 KOG0991 Replication factor C, 93.4 0.077 1.7E-06 53.0 3.8 52 143-194 21-72 (333)
206 cd02024 NRK1 Nicotinamide ribo 93.4 0.055 1.2E-06 54.4 2.8 23 172-194 1-23 (187)
207 TIGR02881 spore_V_K stage V sp 93.3 0.15 3.3E-06 55.2 6.3 26 169-194 41-66 (261)
208 cd02023 UMPK Uridine monophosp 93.3 0.054 1.2E-06 55.9 2.8 23 172-194 1-23 (198)
209 cd01878 HflX HflX subfamily. 93.3 0.2 4.4E-06 52.0 7.1 27 168-194 39-65 (204)
210 TIGR01360 aden_kin_iso1 adenyl 93.3 0.073 1.6E-06 54.5 3.6 26 169-194 2-27 (188)
211 PRK13695 putative NTPase; Prov 93.3 0.11 2.4E-06 52.3 4.8 34 172-206 2-35 (174)
212 PRK14086 dnaA chromosomal repl 93.2 0.31 6.8E-06 57.9 9.1 76 170-260 314-389 (617)
213 cd01394 radB RadB. The archaea 93.2 0.37 8E-06 50.6 8.8 43 169-213 18-60 (218)
214 TIGR00554 panK_bact pantothena 93.2 0.11 2.4E-06 56.2 4.8 27 168-194 60-86 (290)
215 PF13671 AAA_33: AAA domain; P 93.2 0.085 1.8E-06 51.1 3.7 24 172-195 1-24 (143)
216 PF00910 RNA_helicase: RNA hel 93.1 0.068 1.5E-06 48.5 2.8 23 173-195 1-23 (107)
217 PF01583 APS_kinase: Adenylyls 93.1 0.093 2E-06 50.6 3.7 34 171-206 3-36 (156)
218 PRK03992 proteasome-activating 93.0 0.1 2.3E-06 59.8 4.7 51 145-195 127-190 (389)
219 PRK10867 signal recognition pa 92.9 5.3 0.00012 46.1 18.1 58 169-228 99-158 (433)
220 PRK00625 shikimate kinase; Pro 92.9 0.084 1.8E-06 52.6 3.2 24 172-195 2-25 (173)
221 PF07728 AAA_5: AAA domain (dy 92.9 0.26 5.6E-06 47.4 6.6 43 173-220 2-44 (139)
222 TIGR00003 copper ion binding p 92.8 0.71 1.5E-05 36.6 8.4 60 1117-1176 2-65 (68)
223 COG0593 DnaA ATPase involved i 92.8 0.2 4.4E-06 56.3 6.3 77 169-261 112-188 (408)
224 PRK14961 DNA polymerase III su 92.8 0.16 3.4E-06 57.9 5.7 49 147-195 14-63 (363)
225 TIGR01241 FtsH_fam ATP-depende 92.7 0.4 8.7E-06 57.3 9.3 53 143-195 49-113 (495)
226 PRK12726 flagellar biosynthesi 92.7 0.6 1.3E-05 51.9 9.6 87 169-259 205-296 (407)
227 PF00560 LRR_1: Leucine Rich R 92.7 0.041 8.9E-07 33.2 0.4 18 267-284 2-19 (22)
228 KOG2123 Uncharacterized conser 92.7 0.013 2.8E-07 60.0 -2.8 54 774-833 18-71 (388)
229 TIGR00176 mobB molybdopterin-g 92.7 0.15 3.4E-06 49.7 4.7 34 172-206 1-34 (155)
230 PRK14969 DNA polymerase III su 92.7 0.57 1.2E-05 56.0 10.3 48 147-194 14-62 (527)
231 KOG0735 AAA+-type ATPase [Post 92.6 0.36 7.9E-06 56.5 8.1 73 171-260 432-506 (952)
232 TIGR00602 rad24 checkpoint pro 92.6 0.13 2.8E-06 62.0 4.8 53 143-195 78-135 (637)
233 PRK12724 flagellar biosynthesi 92.6 0.41 8.9E-06 54.1 8.4 25 170-194 223-247 (432)
234 PRK05439 pantothenate kinase; 92.6 1 2.2E-05 49.2 11.2 28 168-195 84-111 (311)
235 PRK10751 molybdopterin-guanine 92.6 0.12 2.6E-06 51.0 3.7 27 169-195 5-31 (173)
236 KOG2739 Leucine-rich acidic nu 92.6 0.038 8.2E-07 56.7 0.3 64 879-943 62-127 (260)
237 TIGR01425 SRP54_euk signal rec 92.6 3 6.5E-05 47.8 15.3 43 169-214 99-141 (429)
238 cd02028 UMPK_like Uridine mono 92.6 0.086 1.9E-06 53.1 2.8 24 172-195 1-24 (179)
239 COG1124 DppF ABC-type dipeptid 92.5 0.092 2E-06 53.5 2.9 26 169-194 32-57 (252)
240 COG3640 CooC CO dehydrogenase 92.5 0.16 3.5E-06 51.3 4.5 66 172-245 2-67 (255)
241 TIGR00763 lon ATP-dependent pr 92.5 1.3 2.9E-05 56.0 13.8 45 151-195 322-372 (775)
242 TIGR02238 recomb_DMC1 meiotic 92.5 0.45 9.7E-06 52.5 8.5 59 169-228 95-157 (313)
243 COG1084 Predicted GTPase [Gene 92.4 4.9 0.00011 43.3 15.5 26 167-192 165-190 (346)
244 PRK06217 hypothetical protein; 92.4 0.1 2.2E-06 53.0 3.2 24 172-195 3-26 (183)
245 PRK00889 adenylylsulfate kinas 92.4 0.13 2.8E-06 51.9 3.9 27 169-195 3-29 (175)
246 PRK14721 flhF flagellar biosyn 92.4 0.79 1.7E-05 52.4 10.4 85 170-257 191-278 (420)
247 PRK12723 flagellar biosynthesi 92.4 0.6 1.3E-05 52.9 9.4 89 169-259 173-265 (388)
248 TIGR00678 holB DNA polymerase 92.3 0.78 1.7E-05 46.8 9.6 36 160-195 3-39 (188)
249 PF00158 Sigma54_activat: Sigm 92.3 0.17 3.7E-06 50.2 4.5 66 152-222 2-71 (168)
250 PRK05896 DNA polymerase III su 92.2 0.16 3.5E-06 60.2 4.9 49 146-194 13-62 (605)
251 PRK12597 F0F1 ATP synthase sub 92.2 0.57 1.2E-05 54.0 9.1 101 169-273 142-259 (461)
252 PRK14956 DNA polymerase III su 92.2 0.18 3.9E-06 58.1 5.0 50 146-195 15-65 (484)
253 COG2217 ZntA Cation transport 92.1 0.35 7.5E-06 59.1 7.5 63 1117-1180 2-69 (713)
254 KOG3347 Predicted nucleotide k 92.0 0.14 3E-06 47.5 3.2 68 171-247 8-75 (176)
255 COG0237 CoaE Dephospho-CoA kin 92.0 0.4 8.6E-06 48.8 6.8 23 170-192 2-24 (201)
256 TIGR02322 phosphon_PhnN phosph 92.0 0.13 2.7E-06 52.2 3.3 25 171-195 2-26 (179)
257 CHL00181 cbbX CbbX; Provisiona 92.0 0.32 6.9E-06 53.1 6.5 38 172-209 61-98 (287)
258 KOG3864 Uncharacterized conser 91.9 0.023 5E-07 55.7 -2.0 87 619-714 102-188 (221)
259 PRK14974 cell division protein 91.9 2.1 4.6E-05 47.5 12.9 57 169-228 139-197 (336)
260 KOG3864 Uncharacterized conser 91.9 0.035 7.6E-07 54.5 -0.8 69 874-943 117-187 (221)
261 PRK13531 regulatory ATPase Rav 91.9 0.23 4.9E-06 57.1 5.4 44 150-195 21-64 (498)
262 PF08423 Rad51: Rad51; InterP 91.9 0.57 1.2E-05 50.2 8.3 57 169-226 37-97 (256)
263 TIGR03263 guanyl_kin guanylate 91.9 0.12 2.5E-06 52.5 2.9 24 171-194 2-25 (180)
264 cd02020 CMPK Cytidine monophos 91.8 0.1 2.3E-06 50.8 2.4 24 172-195 1-24 (147)
265 TIGR03305 alt_F1F0_F1_bet alte 91.8 0.67 1.5E-05 53.1 9.1 100 170-273 138-254 (449)
266 PRK14971 DNA polymerase III su 91.8 0.87 1.9E-05 55.4 10.5 49 146-194 14-63 (614)
267 PRK00131 aroK shikimate kinase 91.8 0.14 3.1E-06 51.6 3.4 25 171-195 5-29 (175)
268 PRK08903 DnaA regulatory inact 91.7 0.22 4.8E-06 52.7 4.9 27 169-195 41-67 (227)
269 PRK08927 fliI flagellum-specif 91.7 0.76 1.6E-05 52.6 9.3 97 169-272 157-269 (442)
270 PRK13949 shikimate kinase; Pro 91.7 0.15 3.3E-06 50.7 3.5 25 171-195 2-26 (169)
271 COG1936 Predicted nucleotide k 91.7 0.13 2.8E-06 49.5 2.7 20 172-191 2-21 (180)
272 TIGR00959 ffh signal recogniti 91.7 10 0.00022 43.9 18.4 44 169-214 98-141 (428)
273 KOG2739 Leucine-rich acidic nu 91.7 0.046 1E-06 56.2 -0.3 39 878-917 112-154 (260)
274 PRK03846 adenylylsulfate kinas 91.7 0.15 3.2E-06 52.6 3.4 28 168-195 22-49 (198)
275 TIGR02030 BchI-ChlI magnesium 91.7 0.24 5.2E-06 55.0 5.2 46 149-194 4-49 (337)
276 PF05673 DUF815: Protein of un 91.7 0.74 1.6E-05 47.7 8.3 54 143-196 21-78 (249)
277 COG0194 Gmk Guanylate kinase [ 91.7 0.2 4.3E-06 49.0 4.0 24 171-194 5-28 (191)
278 PRK09280 F0F1 ATP synthase sub 91.6 0.8 1.7E-05 52.7 9.4 101 169-273 143-260 (463)
279 TIGR03346 chaperone_ClpB ATP-d 91.6 4.6 9.9E-05 51.8 17.2 45 150-194 566-619 (852)
280 TIGR00150 HI0065_YjeE ATPase, 91.5 0.32 6.9E-06 45.6 5.1 28 169-196 21-48 (133)
281 PF08477 Miro: Miro-like prote 91.5 0.16 3.4E-06 47.3 3.2 23 173-195 2-24 (119)
282 CHL00176 ftsH cell division pr 91.5 0.41 8.8E-06 58.2 7.3 48 148-195 182-241 (638)
283 PTZ00361 26 proteosome regulat 91.5 0.29 6.3E-06 56.4 5.8 52 144-195 178-242 (438)
284 PRK13975 thymidylate kinase; P 91.5 0.15 3.4E-06 52.5 3.3 25 171-195 3-27 (196)
285 PF07726 AAA_3: ATPase family 91.4 0.11 2.3E-06 47.8 1.7 27 173-201 2-28 (131)
286 TIGR01359 UMP_CMP_kin_fam UMP- 91.4 0.14 3E-06 52.1 2.9 23 172-194 1-23 (183)
287 PRK00300 gmk guanylate kinase; 91.4 0.15 3.3E-06 53.0 3.2 26 169-194 4-29 (205)
288 COG0468 RecA RecA/RadA recombi 91.4 1.4 3.1E-05 47.2 10.4 53 169-224 59-111 (279)
289 cd00820 PEPCK_HprK Phosphoenol 91.4 0.17 3.7E-06 45.1 3.0 22 170-191 15-36 (107)
290 PRK10078 ribose 1,5-bisphospho 91.4 0.15 3.2E-06 52.0 3.0 24 171-194 3-26 (186)
291 cd01135 V_A-ATPase_B V/A-type 91.4 0.96 2.1E-05 48.1 9.0 93 170-262 69-180 (276)
292 cd00071 GMPK Guanosine monopho 91.4 0.14 3E-06 49.0 2.6 23 172-194 1-23 (137)
293 PF03266 NTPase_1: NTPase; In 91.3 0.26 5.7E-06 48.8 4.5 34 173-207 2-35 (168)
294 cd00464 SK Shikimate kinase (S 91.3 0.16 3.6E-06 49.8 3.2 23 173-195 2-24 (154)
295 PRK13947 shikimate kinase; Pro 91.3 0.16 3.5E-06 50.9 3.2 24 172-195 3-26 (171)
296 PF10662 PduV-EutP: Ethanolami 91.2 0.17 3.7E-06 47.8 2.9 24 171-194 2-25 (143)
297 CHL00081 chlI Mg-protoporyphyr 91.2 0.3 6.5E-06 54.3 5.3 49 147-195 15-63 (350)
298 PLN03186 DNA repair protein RA 91.2 0.71 1.5E-05 51.4 8.3 59 169-228 122-184 (342)
299 COG2019 AdkA Archaeal adenylat 91.1 0.18 3.9E-06 47.9 3.0 25 170-194 4-28 (189)
300 cd02021 GntK Gluconate kinase 91.1 0.16 3.4E-06 49.7 2.8 23 172-194 1-23 (150)
301 PRK07940 DNA polymerase III su 91.1 1.1 2.5E-05 51.1 10.0 47 148-194 4-60 (394)
302 PRK08972 fliI flagellum-specif 91.1 0.72 1.6E-05 52.5 8.3 89 169-261 161-265 (444)
303 PF00448 SRP54: SRP54-type pro 91.0 0.53 1.1E-05 48.1 6.6 56 171-229 2-59 (196)
304 PRK10787 DNA-binding ATP-depen 91.0 1.3 2.9E-05 55.5 11.3 46 150-195 323-374 (784)
305 PLN03187 meiotic recombination 91.0 1.1 2.4E-05 49.9 9.5 59 169-228 125-187 (344)
306 PF12061 DUF3542: Protein of u 91.0 1.6 3.5E-05 45.9 9.8 62 25-86 310-371 (402)
307 TIGR02880 cbbX_cfxQ probable R 91.0 0.4 8.7E-06 52.4 6.1 38 172-209 60-97 (284)
308 TIGR00041 DTMP_kinase thymidyl 91.0 1.8 3.8E-05 44.5 10.6 26 171-196 4-29 (195)
309 PF02562 PhoH: PhoH-like prote 90.9 0.34 7.3E-06 49.3 5.0 51 154-206 5-55 (205)
310 TIGR00073 hypB hydrogenase acc 90.9 0.24 5.1E-06 51.5 4.0 29 166-194 18-46 (207)
311 COG1763 MobB Molybdopterin-gua 90.9 0.24 5.2E-06 48.0 3.7 28 170-197 2-29 (161)
312 PRK10463 hydrogenase nickel in 90.9 0.52 1.1E-05 50.6 6.6 34 162-195 96-129 (290)
313 PF00006 ATP-synt_ab: ATP synt 90.9 0.89 1.9E-05 46.9 8.1 86 171-260 16-117 (215)
314 PF00625 Guanylate_kin: Guanyl 90.9 0.29 6.2E-06 49.7 4.6 37 170-208 2-38 (183)
315 PRK05057 aroK shikimate kinase 90.9 0.21 4.7E-06 49.9 3.5 26 170-195 4-29 (172)
316 PRK09087 hypothetical protein; 90.8 0.19 4E-06 52.8 3.2 27 169-195 43-69 (226)
317 COG1100 GTPase SAR1 and relate 90.8 0.15 3.2E-06 53.8 2.5 25 171-195 6-30 (219)
318 cd00227 CPT Chloramphenicol (C 90.8 0.21 4.5E-06 50.3 3.4 24 171-194 3-26 (175)
319 TIGR01287 nifH nitrogenase iro 90.8 0.16 3.4E-06 55.6 2.7 25 171-195 1-25 (275)
320 PRK06620 hypothetical protein; 90.7 0.18 4E-06 52.3 3.0 24 171-194 45-68 (214)
321 PRK13946 shikimate kinase; Pro 90.7 0.21 4.5E-06 50.8 3.3 25 171-195 11-35 (184)
322 PLN02796 D-glycerate 3-kinase 90.7 0.2 4.2E-06 55.1 3.2 27 169-195 99-125 (347)
323 PRK14493 putative bifunctional 90.7 0.19 4.1E-06 54.1 3.1 35 171-208 2-36 (274)
324 CHL00095 clpC Clp protease ATP 90.6 9.3 0.0002 48.9 18.6 45 150-194 510-563 (821)
325 PRK06002 fliI flagellum-specif 90.6 1 2.2E-05 51.6 9.0 90 169-261 164-267 (450)
326 cd04139 RalA_RalB RalA/RalB su 90.5 0.18 4E-06 50.0 2.8 23 172-194 2-24 (164)
327 PTZ00185 ATPase alpha subunit; 90.5 1.3 2.8E-05 51.1 9.4 93 170-262 189-303 (574)
328 KOG2123 Uncharacterized conser 90.5 0.027 5.8E-07 57.8 -3.3 82 853-943 18-99 (388)
329 TIGR02239 recomb_RAD51 DNA rep 90.4 0.94 2E-05 50.2 8.4 58 169-227 95-156 (316)
330 PRK06761 hypothetical protein; 90.4 0.3 6.5E-06 52.4 4.4 33 171-204 4-36 (282)
331 PRK13768 GTPase; Provisional 90.4 0.2 4.3E-06 53.7 3.0 25 171-195 3-27 (253)
332 KOG0733 Nuclear AAA ATPase (VC 90.4 1.1 2.3E-05 51.9 8.7 51 146-196 187-249 (802)
333 cd01983 Fer4_NifH The Fer4_Nif 90.4 0.19 4.1E-06 44.7 2.4 24 172-195 1-24 (99)
334 PF00560 LRR_1: Leucine Rich R 90.4 0.15 3.2E-06 30.8 1.1 17 884-901 2-18 (22)
335 PF00005 ABC_tran: ABC transpo 90.3 0.23 5E-06 47.6 3.1 26 170-195 11-36 (137)
336 COG1373 Predicted ATPase (AAA+ 90.3 0.57 1.2E-05 53.8 6.8 99 154-275 22-121 (398)
337 PRK08533 flagellar accessory p 90.3 1.3 2.8E-05 46.8 8.9 48 169-221 23-71 (230)
338 PRK09825 idnK D-gluconate kina 90.3 0.23 5.1E-06 49.8 3.2 25 171-195 4-28 (176)
339 COG4240 Predicted kinase [Gene 90.3 1.4 3.1E-05 44.2 8.4 80 168-248 48-132 (300)
340 PLN02348 phosphoribulokinase 90.3 0.26 5.7E-06 54.9 3.9 29 167-195 46-74 (395)
341 PRK14530 adenylate kinase; Pro 90.2 0.24 5.2E-06 51.8 3.4 23 172-194 5-27 (215)
342 PRK08149 ATP synthase SpaL; Va 90.2 0.89 1.9E-05 51.9 8.1 89 169-261 150-254 (428)
343 TIGR00764 lon_rel lon-related 90.1 0.8 1.7E-05 55.7 8.2 77 148-228 17-93 (608)
344 PRK12339 2-phosphoglycerate ki 90.1 0.27 5.8E-06 50.2 3.5 25 170-194 3-27 (197)
345 cd03116 MobB Molybdenum is an 90.1 0.31 6.7E-06 47.7 3.8 25 171-195 2-26 (159)
346 TIGR00390 hslU ATP-dependent p 90.1 0.79 1.7E-05 51.6 7.3 75 150-224 13-103 (441)
347 PF01078 Mg_chelatase: Magnesi 90.1 0.43 9.4E-06 48.2 4.8 43 148-192 2-44 (206)
348 PTZ00454 26S protease regulato 90.1 0.41 8.9E-06 54.7 5.3 52 144-195 140-204 (398)
349 cd02027 APSK Adenosine 5'-phos 90.1 0.2 4.3E-06 48.7 2.4 24 172-195 1-24 (149)
350 KOG1644 U2-associated snRNP A' 90.1 0.25 5.5E-06 48.7 3.0 87 263-361 40-126 (233)
351 TIGR02639 ClpA ATP-dependent C 90.0 1.1 2.4E-05 56.3 9.5 45 150-194 455-508 (731)
352 cd01672 TMPK Thymidine monopho 90.0 0.73 1.6E-05 47.6 6.8 24 172-195 2-25 (200)
353 PRK13765 ATP-dependent proteas 90.0 0.51 1.1E-05 57.2 6.2 79 146-228 28-106 (637)
354 cd02034 CooC The accessory pro 90.0 0.34 7.3E-06 44.6 3.7 23 173-195 2-24 (116)
355 TIGR01040 V-ATPase_V1_B V-type 89.9 1.7 3.6E-05 49.8 9.8 101 169-272 140-268 (466)
356 TIGR01313 therm_gnt_kin carboh 89.9 0.19 4E-06 50.0 2.2 22 173-194 1-22 (163)
357 PF01926 MMR_HSR1: 50S ribosom 89.9 0.24 5.2E-06 45.8 2.8 21 173-193 2-22 (116)
358 PF08433 KTI12: Chromatin asso 89.9 0.24 5.1E-06 53.3 3.0 25 171-195 2-26 (270)
359 PRK13230 nitrogenase reductase 89.9 0.22 4.8E-06 54.6 3.0 24 171-194 2-25 (279)
360 PRK13236 nitrogenase reductase 89.8 0.26 5.5E-06 54.4 3.4 26 167-192 3-28 (296)
361 COG4608 AppF ABC-type oligopep 89.8 0.24 5.2E-06 51.8 2.9 89 169-260 38-139 (268)
362 cd03114 ArgK-like The function 89.8 0.21 4.6E-06 48.4 2.4 24 172-195 1-24 (148)
363 COG1102 Cmk Cytidylate kinase 89.8 0.28 6.1E-06 46.5 3.0 45 172-229 2-46 (179)
364 PRK13948 shikimate kinase; Pro 89.8 0.29 6.3E-06 49.1 3.4 27 169-195 9-35 (182)
365 TIGR00064 ftsY signal recognit 89.8 0.54 1.2E-05 50.8 5.6 44 169-215 71-114 (272)
366 TIGR02640 gas_vesic_GvpN gas v 89.7 0.79 1.7E-05 49.5 7.0 53 158-217 11-63 (262)
367 cd01121 Sms Sms (bacterial rad 89.7 1 2.2E-05 51.0 8.0 87 169-260 81-170 (372)
368 cd02117 NifH_like This family 89.7 0.24 5.1E-06 51.8 2.8 24 171-194 1-24 (212)
369 PRK08099 bifunctional DNA-bind 89.7 0.27 5.9E-06 56.2 3.5 28 167-194 216-243 (399)
370 PF03029 ATP_bind_1: Conserved 89.7 0.29 6.3E-06 51.7 3.4 22 175-196 1-22 (238)
371 PRK14970 DNA polymerase III su 89.6 0.48 1E-05 54.4 5.5 49 146-194 14-63 (367)
372 PLN02318 phosphoribulokinase/u 89.6 0.35 7.7E-06 56.6 4.3 27 167-193 62-88 (656)
373 PRK13232 nifH nitrogenase redu 89.6 0.24 5.1E-06 54.2 2.9 24 171-194 2-25 (273)
374 COG1116 TauB ABC-type nitrate/ 89.6 0.27 5.7E-06 50.8 2.9 25 169-193 28-52 (248)
375 PF00142 Fer4_NifH: 4Fe-4S iro 89.5 0.67 1.4E-05 48.4 5.8 41 171-213 1-41 (273)
376 cd00544 CobU Adenosylcobinamid 89.5 1.3 2.9E-05 43.8 7.8 80 173-258 2-83 (169)
377 PRK04182 cytidylate kinase; Pr 89.5 0.3 6.5E-06 49.5 3.4 24 172-195 2-25 (180)
378 TIGR03877 thermo_KaiC_1 KaiC d 89.5 2.2 4.7E-05 45.4 10.0 47 169-220 20-67 (237)
379 COG0563 Adk Adenylate kinase a 89.5 0.3 6.4E-06 48.9 3.2 24 172-195 2-25 (178)
380 TIGR00750 lao LAO/AO transport 89.4 0.39 8.5E-06 53.1 4.4 38 158-195 20-59 (300)
381 COG1120 FepC ABC-type cobalami 89.4 0.26 5.6E-06 51.8 2.8 27 169-195 27-53 (258)
382 PF13504 LRR_7: Leucine rich r 89.4 0.26 5.7E-06 27.5 1.6 17 989-1006 1-17 (17)
383 PRK13407 bchI magnesium chelat 89.4 0.44 9.5E-06 52.9 4.7 47 147-193 6-52 (334)
384 PF13306 LRR_5: Leucine rich r 89.4 1.2 2.6E-05 42.0 7.3 106 818-940 5-111 (129)
385 PF03193 DUF258: Protein of un 89.4 0.41 8.9E-06 46.5 3.9 34 158-194 26-59 (161)
386 cd02022 DPCK Dephospho-coenzym 89.3 0.26 5.7E-06 49.7 2.7 21 172-192 1-21 (179)
387 cd02040 NifH NifH gene encodes 89.3 0.27 5.8E-06 53.7 3.0 25 171-195 2-26 (270)
388 cd02029 PRK_like Phosphoribulo 89.2 1 2.2E-05 47.6 6.9 24 172-195 1-24 (277)
389 PRK14959 DNA polymerase III su 89.2 1.6 3.4E-05 52.4 9.4 49 147-195 14-63 (624)
390 COG0542 clpA ATP-binding subun 89.2 6 0.00013 48.6 14.2 42 151-192 493-543 (786)
391 PRK03731 aroL shikimate kinase 89.1 0.28 6.1E-06 49.2 2.8 25 171-195 3-27 (171)
392 cd02026 PRK Phosphoribulokinas 89.1 0.27 5.9E-06 53.1 2.8 24 172-195 1-24 (273)
393 PRK06936 type III secretion sy 89.0 1.4 3.1E-05 50.4 8.5 89 169-261 161-265 (439)
394 PRK06067 flagellar accessory p 89.0 2.4 5.3E-05 45.0 10.0 47 169-220 24-71 (234)
395 PF13521 AAA_28: AAA domain; P 89.0 0.3 6.4E-06 48.5 2.8 21 173-193 2-22 (163)
396 COG0003 ArsA Predicted ATPase 89.0 0.75 1.6E-05 50.5 6.0 46 170-217 2-47 (322)
397 COG1126 GlnQ ABC-type polar am 88.9 0.33 7.1E-06 48.6 2.9 35 169-206 27-61 (240)
398 TIGR02902 spore_lonB ATP-depen 88.9 0.49 1.1E-05 56.7 5.1 49 147-195 63-111 (531)
399 TIGR02397 dnaX_nterm DNA polym 88.9 0.56 1.2E-05 53.7 5.4 49 146-194 11-60 (355)
400 COG2909 MalT ATP-dependent tra 88.8 3 6.4E-05 50.7 11.1 100 158-260 24-141 (894)
401 COG3899 Predicted ATPase [Gene 88.8 1.3 2.7E-05 56.4 8.7 45 151-195 2-49 (849)
402 PRK12678 transcription termina 88.7 1.9 4.2E-05 50.3 9.2 95 161-260 406-515 (672)
403 PRK14490 putative bifunctional 88.7 0.6 1.3E-05 53.3 5.4 26 170-195 5-30 (369)
404 COG1222 RPT1 ATP-dependent 26S 88.7 0.65 1.4E-05 50.2 5.1 54 142-195 144-210 (406)
405 TIGR02173 cyt_kin_arch cytidyl 88.7 0.38 8.3E-06 48.2 3.4 23 172-194 2-24 (171)
406 COG1223 Predicted ATPase (AAA+ 88.7 0.51 1.1E-05 48.3 4.1 52 145-196 117-177 (368)
407 cd03229 ABC_Class3 This class 88.6 0.35 7.5E-06 48.9 3.1 26 169-194 25-50 (178)
408 PRK09112 DNA polymerase III su 88.6 0.74 1.6E-05 51.8 5.9 51 145-195 19-70 (351)
409 TIGR01039 atpD ATP synthase, F 88.6 2.4 5.2E-05 48.7 9.9 101 169-273 142-259 (461)
410 cd01862 Rab7 Rab7 subfamily. 88.6 0.28 6E-06 49.2 2.4 22 172-193 2-23 (172)
411 PF13504 LRR_7: Leucine rich r 88.6 0.32 6.8E-06 27.2 1.5 10 907-916 2-11 (17)
412 COG1875 NYN ribonuclease and A 88.6 0.52 1.1E-05 51.0 4.3 43 147-189 222-264 (436)
413 cd03238 ABC_UvrA The excision 88.6 0.34 7.4E-06 48.4 2.9 24 169-192 20-43 (176)
414 PF03308 ArgK: ArgK protein; 88.6 0.89 1.9E-05 47.4 5.9 40 157-196 14-55 (266)
415 cd03225 ABC_cobalt_CbiO_domain 88.5 0.35 7.5E-06 50.6 3.1 27 169-195 26-52 (211)
416 PRK07594 type III secretion sy 88.5 1.3 2.8E-05 50.8 7.7 97 169-272 154-266 (433)
417 PTZ00035 Rad51 protein; Provis 88.5 2.2 4.8E-05 47.7 9.5 58 169-227 117-178 (337)
418 PF03215 Rad17: Rad17 cell cyc 88.5 0.83 1.8E-05 54.0 6.4 58 146-207 16-78 (519)
419 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.5 0.35 7.5E-06 50.8 3.1 27 169-195 29-55 (218)
420 PRK13233 nifH nitrogenase redu 88.4 0.32 7E-06 53.2 2.9 24 171-194 3-26 (275)
421 PRK09111 DNA polymerase III su 88.4 0.57 1.2E-05 56.5 5.1 51 145-195 20-71 (598)
422 cd04155 Arl3 Arl3 subfamily. 88.4 0.31 6.8E-06 48.9 2.6 25 169-193 13-37 (173)
423 PLN03046 D-glycerate 3-kinase; 88.3 0.38 8.2E-06 53.9 3.2 27 169-195 211-237 (460)
424 cd01131 PilT Pilus retraction 88.3 0.62 1.3E-05 47.9 4.7 86 171-262 2-88 (198)
425 cd03222 ABC_RNaseL_inhibitor T 88.3 0.35 7.6E-06 48.4 2.7 27 169-195 24-50 (177)
426 PRK14738 gmk guanylate kinase; 88.2 0.38 8.3E-06 49.8 3.1 25 169-193 12-36 (206)
427 PRK13235 nifH nitrogenase redu 88.1 0.35 7.5E-06 52.9 2.9 22 171-192 2-23 (274)
428 PHA02575 1 deoxynucleoside mon 88.1 0.38 8.3E-06 49.1 2.9 21 172-192 2-22 (227)
429 PRK13231 nitrogenase reductase 88.1 0.37 8E-06 52.4 3.1 26 170-195 2-27 (264)
430 TIGR02016 BchX chlorophyllide 88.1 0.35 7.6E-06 53.1 2.9 25 171-195 1-25 (296)
431 TIGR01041 ATP_syn_B_arch ATP s 88.1 2.1 4.6E-05 49.5 9.2 101 170-273 141-260 (458)
432 PF06564 YhjQ: YhjQ protein; 88.1 0.39 8.4E-06 50.2 3.0 26 170-195 1-27 (243)
433 PRK09519 recA DNA recombinatio 88.1 1.7 3.8E-05 53.4 8.9 85 169-260 59-150 (790)
434 PLN00020 ribulose bisphosphate 88.0 0.43 9.3E-06 52.4 3.4 29 168-196 146-174 (413)
435 PRK08356 hypothetical protein; 88.0 0.38 8.2E-06 49.4 2.9 20 171-190 6-25 (195)
436 PF13604 AAA_30: AAA domain; P 88.0 0.62 1.3E-05 47.7 4.5 37 160-196 8-44 (196)
437 TIGR01166 cbiO cobalt transpor 88.0 0.39 8.4E-06 49.2 3.0 26 170-195 18-43 (190)
438 PRK14527 adenylate kinase; Pro 88.0 0.44 9.5E-06 48.8 3.4 27 169-195 5-31 (191)
439 cd01132 F1_ATPase_alpha F1 ATP 88.0 2.9 6.2E-05 44.6 9.4 88 170-261 69-174 (274)
440 PF02680 DUF211: Uncharacteriz 88.0 3.2 6.9E-05 35.5 7.6 60 1117-1176 5-72 (95)
441 PF06309 Torsin: Torsin; Inte 87.9 1.1 2.3E-05 41.2 5.4 43 151-193 27-76 (127)
442 COG4107 PhnK ABC-type phosphon 87.9 0.42 9.1E-06 45.6 2.8 26 170-195 32-57 (258)
443 COG5238 RNA1 Ran GTPase-activa 87.9 0.26 5.7E-06 50.6 1.6 90 774-864 91-195 (388)
444 TIGR00960 3a0501s02 Type II (G 87.9 0.39 8.5E-06 50.3 3.0 35 169-206 28-62 (216)
445 KOG0744 AAA+-type ATPase [Post 87.9 2.2 4.9E-05 45.4 8.2 40 169-208 176-217 (423)
446 cd04113 Rab4 Rab4 subfamily. 87.8 0.4 8.6E-06 47.5 2.9 22 173-194 3-24 (161)
447 CHL00060 atpB ATP synthase CF1 87.8 2.1 4.6E-05 49.5 8.9 100 169-272 160-283 (494)
448 PF02374 ArsA_ATPase: Anion-tr 87.8 0.41 8.8E-06 52.8 3.1 23 171-193 2-24 (305)
449 COG1348 NifH Nitrogenase subun 87.8 0.36 7.7E-06 48.6 2.3 25 171-195 2-26 (278)
450 PRK14737 gmk guanylate kinase; 87.7 0.45 9.7E-06 48.2 3.2 26 169-194 3-28 (186)
451 cd04153 Arl5_Arl8 Arl5/Arl8 su 87.7 0.66 1.4E-05 46.7 4.4 35 159-193 4-38 (174)
452 PRK07196 fliI flagellum-specif 87.7 1.5 3.2E-05 50.3 7.6 97 169-272 154-266 (434)
453 PF13245 AAA_19: Part of AAA d 87.7 1.3 2.8E-05 37.1 5.3 25 170-194 10-35 (76)
454 PRK04328 hypothetical protein; 87.7 2.4 5.2E-05 45.4 8.9 40 169-211 22-62 (249)
455 PRK14952 DNA polymerase III su 87.7 0.68 1.5E-05 55.5 5.1 50 146-195 10-60 (584)
456 PF05970 PIF1: PIF1-like helic 87.6 1.2 2.7E-05 50.6 7.1 38 158-195 10-47 (364)
457 PRK05688 fliI flagellum-specif 87.6 2.1 4.6E-05 49.2 8.8 89 169-261 167-271 (451)
458 TIGR01281 DPOR_bchL light-inde 87.6 0.38 8.3E-06 52.4 2.8 21 172-192 2-22 (268)
459 PF13086 AAA_11: AAA domain; P 87.6 1.2 2.5E-05 47.5 6.6 64 158-223 7-75 (236)
460 cd01673 dNK Deoxyribonucleosid 87.6 0.41 8.8E-06 49.2 2.9 23 172-194 1-23 (193)
461 PRK15453 phosphoribulokinase; 87.5 0.55 1.2E-05 49.9 3.7 26 169-194 4-29 (290)
462 cd02042 ParA ParA and ParB of 87.5 0.39 8.6E-06 43.3 2.4 24 172-195 1-25 (104)
463 COG4167 SapF ABC-type antimicr 87.5 1.4 2.9E-05 42.7 5.9 79 169-247 38-135 (267)
464 PLN02165 adenylate isopentenyl 87.5 0.46 1E-05 52.0 3.3 30 165-194 38-67 (334)
465 cd04119 RJL RJL (RabJ-Like) su 87.5 0.39 8.5E-06 47.8 2.7 22 173-194 3-24 (168)
466 PRK13541 cytochrome c biogenes 87.5 0.43 9.3E-06 49.1 2.9 26 170-195 26-51 (195)
467 PF00071 Ras: Ras family; Int 87.5 0.49 1.1E-05 46.9 3.3 22 173-194 2-23 (162)
468 cd00879 Sar1 Sar1 subfamily. 87.5 0.75 1.6E-05 47.0 4.8 33 161-193 9-42 (190)
469 COG1245 Predicted ATPase, RNas 87.4 0.4 8.7E-06 53.3 2.7 27 169-195 366-392 (591)
470 smart00175 RAB Rab subfamily o 87.4 0.38 8.1E-06 47.8 2.4 23 172-194 2-24 (164)
471 cd03297 ABC_ModC_molybdenum_tr 87.4 0.46 1E-05 49.7 3.2 26 169-195 23-48 (214)
472 smart00173 RAS Ras subfamily o 87.3 0.45 9.8E-06 47.3 3.0 22 172-193 2-23 (164)
473 PRK01184 hypothetical protein; 87.3 0.46 9.9E-06 48.4 3.0 18 171-188 2-19 (184)
474 TIGR00455 apsK adenylylsulfate 87.3 0.5 1.1E-05 48.0 3.3 27 169-195 17-43 (184)
475 PLN02924 thymidylate kinase 87.3 1.3 2.9E-05 46.1 6.5 53 170-223 16-68 (220)
476 PRK08154 anaerobic benzoate ca 87.3 0.79 1.7E-05 50.8 5.1 27 169-195 132-158 (309)
477 PLN02200 adenylate kinase fami 87.3 0.57 1.2E-05 49.4 3.8 26 169-194 42-67 (234)
478 PTZ00088 adenylate kinase 1; P 87.3 0.48 1E-05 49.6 3.2 22 173-194 9-30 (229)
479 cd03278 ABC_SMC_barmotin Barmo 87.3 0.44 9.5E-06 48.9 2.9 22 172-193 24-45 (197)
480 cd03269 ABC_putative_ATPase Th 87.3 0.44 9.5E-06 49.7 2.9 35 169-206 25-59 (210)
481 TIGR00017 cmk cytidylate kinas 87.2 0.52 1.1E-05 49.0 3.4 25 171-195 3-27 (217)
482 cd03259 ABC_Carb_Solutes_like 87.2 0.46 1E-05 49.7 3.1 26 169-194 25-50 (213)
483 PRK06305 DNA polymerase III su 87.2 0.75 1.6E-05 53.8 5.0 49 146-194 14-63 (451)
484 cd03293 ABC_NrtD_SsuB_transpor 87.2 0.46 1E-05 50.0 3.0 25 170-194 30-54 (220)
485 cd03261 ABC_Org_Solvent_Resist 87.2 0.46 9.9E-06 50.6 3.0 27 169-195 25-51 (235)
486 TIGR00101 ureG urease accessor 87.1 0.53 1.2E-05 48.3 3.4 24 172-195 3-26 (199)
487 PRK10416 signal recognition pa 87.1 0.5 1.1E-05 52.2 3.4 27 169-195 113-139 (318)
488 cd03260 ABC_PstB_phosphate_tra 87.1 0.48 1E-05 50.1 3.2 26 169-194 25-50 (227)
489 PRK10584 putative ABC transpor 87.1 0.47 1E-05 50.3 3.1 26 169-194 35-60 (228)
490 cd00876 Ras Ras family. The R 87.1 0.46 9.9E-06 46.9 2.8 21 173-193 2-22 (160)
491 TIGR02673 FtsE cell division A 87.1 0.46 9.9E-06 49.8 3.0 35 169-206 27-61 (214)
492 cd03235 ABC_Metallic_Cations A 87.1 0.45 9.8E-06 49.7 2.9 27 169-195 24-50 (213)
493 cd03263 ABC_subfamily_A The AB 87.1 0.47 1E-05 49.9 3.0 26 169-194 27-52 (220)
494 COG3638 ABC-type phosphate/pho 87.0 0.49 1.1E-05 48.1 2.9 74 169-245 29-103 (258)
495 PRK00698 tmk thymidylate kinas 87.0 0.55 1.2E-05 48.7 3.5 25 171-195 4-28 (205)
496 PRK07429 phosphoribulokinase; 87.0 0.56 1.2E-05 52.0 3.7 28 168-195 6-33 (327)
497 cd00878 Arf_Arl Arf (ADP-ribos 86.9 0.41 8.9E-06 47.2 2.4 22 173-194 2-23 (158)
498 COG0703 AroK Shikimate kinase 86.9 0.59 1.3E-05 45.6 3.3 24 172-195 4-27 (172)
499 TIGR03574 selen_PSTK L-seryl-t 86.9 0.5 1.1E-05 50.7 3.2 23 173-195 2-24 (249)
500 cd00154 Rab Rab family. Rab G 86.8 0.49 1.1E-05 46.5 2.9 22 173-194 3-24 (159)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-44 Score=432.84 Aligned_cols=681 Identities=22% Similarity=0.240 Sum_probs=419.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhHhhhHHHHhhcc----------------
Q 000945 30 NFDDLKKKTEKLKLTLEDLHLWVDAAKENGEEIEQSVEKWLISANTTVVEAGKLIEDEEKEKKK---------------- 93 (1212)
Q Consensus 30 ~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~v~~Wl~~lk~~~~~aed~ld~~~~~~~~---------------- 93 (1212)
.+.+.++++..|+..|..++.++++|+++ +.....+..|.+.+++++|+|||+++.+..+...
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 35677889999999999999999999988 4557889999999999999999999876443211
Q ss_pred -cccCC-CCChhHHHHHHHHHHHHHHHHHHHhhcCCcceecc-ccCCCccccccCCCcccccchHHHHHHHHHHhCCCCc
Q 000945 94 -CLKGL-CPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSF-CTKPEGILLMCSEGYEAFESRKSILNDALDALSNPNV 170 (1212)
Q Consensus 94 -~~~~~-~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~gr~~~~~~l~~~L~~~~~ 170 (1212)
|+.+. ..+....+++++++.++.+.++.+..++.|..+.. ..+...+++.+...... +|.+..++++++.|.+++.
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~ 179 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV 179 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC
Confidence 22122 22445566788888888888888887776765553 22222344444444434 8999999999999998888
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh-hcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC---CChhHHHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK-KLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE---GSESERAMVLCGLLK 246 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~-v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~---~~~~~~~~~l~~~L~ 246 (1212)
.++||+||||+||||||+.|||+.. ++++||.++||+||++|+..++|++|++.++..... .+..+.+..|.+.|+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999988 999999999999999999999999999998874333 334688999999999
Q ss_pred cCCcEE-EecCccccccccc----------cceeeeccCC--------------ccccc-cHHHHhhccccccc--ccCC
Q 000945 247 KGKKIL-VLDNIWTSLDLDK----------KLEILSLVDS--------------NIEQL-PEEMAQLTQLRLFD--LSGC 298 (1212)
Q Consensus 247 ~~kr~L-VLDDVw~~~~~~~----------~Lr~L~ls~~--------------~i~~l-p~~i~~L~~L~~L~--Ls~~ 298 (1212)
. |||+ ||||||+..+|+. -.+++--+.+ .+..+ |+.-..|..-.... +..+
T Consensus 260 ~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~ 338 (889)
T KOG4658|consen 260 G-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSH 338 (889)
T ss_pred c-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccc
Confidence 5 9999 9999999999987 0222111110 01111 11111111111111 1122
Q ss_pred CCCcccchhHhhccccCc--------eeecCCCcceeeeecccc---------CCCccchhhhhcC-CCCC-cceeeecc
Q 000945 299 SKLKVIPPNLLSGLSRLE--------DLYMGNTSVKWEFEGLNV---------GRSNASLQELKLL-SHLT-TLEIQICD 359 (1212)
Q Consensus 299 ~~l~~lp~~~i~~L~~L~--------~L~l~~~~~~w~~~~~~~---------~~~~~~~~~L~~l-~~L~-~L~l~~~~ 359 (1212)
..+..+.+.++.+|.+|. .|.-..+..+|....... ...+.+++.|+.. .+|+ ++..||-|
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 235666677777887773 233344444565542211 1123344555432 4455 47778889
Q ss_pred cccCCCCcccccceEEeEEEcCcccccCC-Ccc---------------------------ceeeeeccccChHHHHHHH-
Q 000945 360 AMILPKGLFSKKLERYKIFIGDEWDWSGN-YKN---------------------------KRVLKLKLYTSNVDEVIMQ- 410 (1212)
Q Consensus 360 ~~~~p~~~~~~~L~~l~~~~~~~~~~~~~-~~~---------------------------~~~l~~~l~~~i~~~~~~~- 410 (1212)
|+.||+|+.+.+-+.+.+|++++|..... +.. ...-+||.-..+.-+.+..
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 99999999999989999999998765421 111 0112222211111111110
Q ss_pred hccceEEEeccCCCcccccccC-------------------CccccCCCcEEEeecCCC-ceeeecCcchhccccccccc
Q 000945 411 LKGIEELYLDEVPGIKNVLYDL-------------------DIEGFLQLKHLHVQNNPF-ILFIVDSMAWVRYNAFLLLE 470 (1212)
Q Consensus 411 l~~l~~L~l~~~~~~~~~~~~l-------------------~~~~l~~L~~L~l~~~~~-~~~l~~~~~~~~~~~~~~L~ 470 (1212)
....+...+....+..+..... .....+.|++|-+.++.. +..+ ....+..+|.|+
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i----s~~ff~~m~~Lr 574 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLR 574 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc----CHHHHhhCcceE
Confidence 0112222111111111111110 011233455555555421 1111 011134567777
Q ss_pred eeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCcc
Q 000945 471 SLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEV 550 (1212)
Q Consensus 471 ~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 550 (1212)
.|+|++|..+..+ |..++.+-+||+|++++ ..++++| ..+++|..|.+|++..+..+..++.
T Consensus 575 VLDLs~~~~l~~L---P~~I~~Li~LryL~L~~-t~I~~LP--~~l~~Lk~L~~Lnl~~~~~l~~~~~------------ 636 (889)
T KOG4658|consen 575 VLDLSGNSSLSKL---PSSIGELVHLRYLDLSD-TGISHLP--SGLGNLKKLIYLNLEVTGRLESIPG------------ 636 (889)
T ss_pred EEECCCCCccCcC---ChHHhhhhhhhcccccC-CCccccc--hHHHHHHhhheeccccccccccccc------------
Confidence 7777766554433 66777777777777776 4677776 4567777777777776665555543
Q ss_pred CceecccccEEecccCCcccccccccccchhhHhhhcccccccC--Ccc---------------eeccc-cccccccccc
Q 000945 551 DKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTL--PRE---------------VILED-ECDTLMPFFN 612 (1212)
Q Consensus 551 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l--~~~---------------~~~~~-~~~~l~~~~~ 612 (1212)
....+++|++|.+..-. ... ..........+..|+.... .+. ..... .+........
T Consensus 637 i~~~L~~Lr~L~l~~s~--~~~---~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~ 711 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSA--LSN---DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS 711 (889)
T ss_pred hhhhcccccEEEeeccc--ccc---chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeec
Confidence 33446667766653321 000 0000111111111111100 000 00000 1122334445
Q ss_pred ccccccccceeeccccccce---ecccCccccc-CcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeec
Q 000945 613 EKVVFPNLETLELCAISTEK---IWCNQLAAVY-SQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVG 688 (1212)
Q Consensus 613 ~l~~~~~L~~L~l~~~~l~~---~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~ 688 (1212)
.+..+.+|+.|.|.+|.... .|........ |+++..+.+.+|.....+.+ ....|+|+.|.+.+|..++.+..
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCC
Confidence 56778999999999995532 3443322222 77888889999988887655 34589999999999998888865
Q ss_pred cccccccc--ccccCCcccee-ecccCCccceeccCCCcCCCCCccEEEEecCCCccccc
Q 000945 689 KESGEEAT--TTFVFPKVTFL-KLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFT 745 (1212)
Q Consensus 689 ~~~~~~~~--~~~~~~~L~~L-~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp 745 (1212)
........ ....|.++..+ .+.+.+.+..+..... .+++|+.+.+..||++..+|
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l--~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL--SFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred HHHHhhhcccEEecccccccceeeecCCCCceeEeccc--CccchhheehhcCcccccCc
Confidence 43322111 24567788888 5777777777765432 46779999999999999885
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-42 Score=445.85 Aligned_cols=301 Identities=21% Similarity=0.276 Sum_probs=200.2
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+.+|++|++.++.+..+|.+. ..+++|+.|+|++|..++.+|. ++.+++|+.|++++|..+..++.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~-------- 675 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGV---HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPS-------- 675 (1153)
T ss_pred ccCCcEEECcCcccccccccc---ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccch--------
Confidence 367888888888877788764 3688999999999888888765 67789999999999988887753
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|+.|++.+|.+++.++.+. .+++|+.|.+++|..+..+|. .+++
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~--------------------------~~~n 726 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD--------------------------ISTN 726 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc--------------------------ccCC
Confidence 34568889999999999888887643 578899999999988877741 1457
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|++|++++|.+..++.. ..+++|++|++.+.....++.. +..+.+ .....+++|
T Consensus 727 L~~L~L~~n~i~~lP~~----~~l~~L~~L~l~~~~~~~l~~~-----------------~~~l~~-----~~~~~~~sL 780 (1153)
T PLN03210 727 ISWLDLDETAIEEFPSN----LRLENLDELILCEMKSEKLWER-----------------VQPLTP-----LMTMLSPSL 780 (1153)
T ss_pred cCeeecCCCcccccccc----ccccccccccccccchhhcccc-----------------ccccch-----hhhhccccc
Confidence 77788877776655421 1345566555554221111100 000000 001124567
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|++++|+.+..+ |..++++++|+.|++++|..++.+|... .+++|+.|++++|..+..+|. ..++|+.
T Consensus 781 ~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~ 850 (1153)
T PLN03210 781 TRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISD 850 (1153)
T ss_pred hheeCCCCCCcccc----ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCE
Confidence 77777777666655 4556677777777777777777776654 567777777777777766552 2355777
Q ss_pred EEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccC
Q 000945 937 LRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFS 1006 (1212)
Q Consensus 937 L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp 1006 (1212)
|+++++. ++++|. ....+++|+.|++.+|++|+.+|.... .+++|+.+++++|++++.++
T Consensus 851 L~Ls~n~-i~~iP~-------si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 851 LNLSRTG-IEEVPW-------WIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred eECCCCC-CccChH-------HHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCCccccccc
Confidence 7776654 555552 234467777777777777777766544 34677777777777776554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-32 Score=353.55 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=65.7
Q ss_pred cceeeeccCCcccc-ccHHHHhhcccccccccCCCCCc-ccchhHhhccccCceeecCCCcceeeeeccccCCCccchhh
Q 000945 266 KLEILSLVDSNIEQ-LPEEMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 343 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~-lp~~i~~L~~L~~L~Ls~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~ 343 (1212)
+++.|+++++.+.. +|..+..+.+|++|+|++| .+. .+|.+++..+.+|++|++++|.+. +..+.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-----------~~~p~- 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFT-----------GSIPR- 136 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccc-----------cccCc-
Confidence 68899999998874 4788999999999999999 564 799987779999999999999875 11221
Q ss_pred hhcCCCCCcceeeecccc
Q 000945 344 LKLLSHLTTLEIQICDAM 361 (1212)
Q Consensus 344 L~~l~~L~~L~l~~~~~~ 361 (1212)
..+.+|++|+++.|.+.
T Consensus 137 -~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLS 153 (968)
T ss_pred -cccCCCCEEECcCCccc
Confidence 35678888888877654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=6.7e-31 Score=342.30 Aligned_cols=520 Identities=16% Similarity=0.060 Sum_probs=286.4
Q ss_pred cccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh-cCCCCCcceeeecccc-cCCC
Q 000945 288 TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK-LLSHLTTLEIQICDAM-ILPK 365 (1212)
Q Consensus 288 ~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~-~l~~L~~L~l~~~~~~-~~p~ 365 (1212)
.+++.|+++++ .+.......+..+.+|++|++++|.+. +..+..+. .+.+|++|+++.|.+. .+|.
T Consensus 69 ~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~~~-----------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQLS-----------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCccC-----------CcCChHHhccCCCCCEEECcCCccccccCc
Confidence 46889999998 665444445899999999999999874 33455544 7889999999988754 2332
Q ss_pred CcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCcccccccCCccccCCCcEEEe
Q 000945 366 GLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNVLYDLDIEGFLQLKHLHV 445 (1212)
Q Consensus 366 ~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~~~~~~~l~~~~l~~L~~L~l 445 (1212)
. .+ .+++.|.+.+.......+..+. .+++|++|++
T Consensus 137 ~-~l------------------------------------------~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L 171 (968)
T PLN00113 137 G-SI------------------------------------------PNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDL 171 (968)
T ss_pred c-cc------------------------------------------CCCCEEECcCCcccccCChHHh--cCCCCCEEEC
Confidence 1 11 2233344433322212222222 5667777777
Q ss_pred ecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEE
Q 000945 446 QNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTL 525 (1212)
Q Consensus 446 ~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L 525 (1212)
++|.....+|.. ...+++|++|+++++... ...|..++.+++|++|+|++|.-...+| ..++++++|++|
T Consensus 172 ~~n~l~~~~p~~-----~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L 241 (968)
T PLN00113 172 GGNVLVGKIPNS-----LTNLTSLEFLTLASNQLV---GQIPRELGQMKSLKWIYLGYNNLSGEIP--YEIGGLTSLNHL 241 (968)
T ss_pred ccCcccccCChh-----hhhCcCCCeeeccCCCCc---CcCChHHcCcCCccEEECcCCccCCcCC--hhHhcCCCCCEE
Confidence 766433333221 235666677776665322 1224455666677777776653333344 345666777777
Q ss_pred EEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccc
Q 000945 526 NVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECD 605 (1212)
Q Consensus 526 ~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~ 605 (1212)
++++|.....+|. .+..+++|+.|+++++.-...+
T Consensus 242 ~L~~n~l~~~~p~------------~l~~l~~L~~L~L~~n~l~~~~--------------------------------- 276 (968)
T PLN00113 242 DLVYNNLTGPIPS------------SLGNLKNLQYLFLYQNKLSGPI--------------------------------- 276 (968)
T ss_pred ECcCceeccccCh------------hHhCCCCCCEEECcCCeeeccC---------------------------------
Confidence 7766653334443 4556666666666654321111
Q ss_pred cccccccccccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccce
Q 000945 606 TLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLES 685 (1212)
Q Consensus 606 ~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 685 (1212)
...+..+++|++|++++|.+.......+ ..+++|+.|++++|.....+|.. ++.+++|+.|++++|.....
T Consensus 277 -----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 277 -----PPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVA--LTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred -----chhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChh--HhcCCCCCEEECcCCCCcCc
Confidence 1122334667777777774432211111 13667777777766443333322 46677777777777653222
Q ss_pred eecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCcccc
Q 000945 686 IVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQ 765 (1212)
Q Consensus 686 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~ 765 (1212)
++. ....+++|+.|+++++.-...++... ..+++|+.|++.+|+-...+|. .+
T Consensus 348 ~p~--------~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~---~~-------------- 400 (968)
T PLN00113 348 IPK--------NLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPK---SL-------------- 400 (968)
T ss_pred CCh--------HHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCH---HH--------------
Confidence 221 22345667777776654332222211 1345666666666543223321 00
Q ss_pred ceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccc
Q 000945 766 ALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEE 845 (1212)
Q Consensus 766 ~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~ 845 (1212)
..+++|+.|++++|.+.+..+ .....+++|+.|++++|.+...++..+..+++|+.|+++.|.+....+..
T Consensus 401 ------~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~- 471 (968)
T PLN00113 401 ------GACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS- 471 (968)
T ss_pred ------hCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-
Confidence 015667777777666665433 22345666777777776555544444556677777777744443322211
Q ss_pred hhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccch
Q 000945 846 IVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTS 925 (1212)
Q Consensus 846 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~ 925 (1212)
...++|+.|++++|.-... .|..+..+++|+.|++++|...+.+|..+..+++|+.|+|++|.-...+|
T Consensus 472 -----~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-- 540 (968)
T PLN00113 472 -----FGSKRLENLDLSRNQFSGA----VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-- 540 (968)
T ss_pred -----cccccceEEECcCCccCCc----cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC--
Confidence 0135666777766542222 24455666677777777766666666666666777777777654333333
Q ss_pred hhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCC
Q 000945 926 STAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSG 982 (1212)
Q Consensus 926 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 982 (1212)
..+..+++|+.|++++|.....+|. ....+++|+.|++++|+-...+|..
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPK-------NLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCCh-------hHhcCcccCEEeccCCcceeeCCCc
Confidence 3445666677777776665444442 2233566666666666655555543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.1e-20 Score=245.29 Aligned_cols=270 Identities=21% Similarity=0.263 Sum_probs=185.0
Q ss_pred ccccceeecccc-ccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccc
Q 000945 617 FPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEA 695 (1212)
Q Consensus 617 ~~~L~~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 695 (1212)
+++|+.|+++++ .+..++.. ..+++|+.|+|++|..+..+|.. ++++++|+.|++++|..++.++..
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~------ 700 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDL----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTG------ 700 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCcc----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCc------
Confidence 455666666555 33333221 24677888888888777777654 677888888888888877777431
Q ss_pred cccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecc
Q 000945 696 TTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTS 775 (1212)
Q Consensus 696 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 775 (1212)
..+++|+.|.+.+|..+..++. ..++|+.|++.++. +..+|... .++
T Consensus 701 ---i~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~-i~~lP~~~------------------------~l~ 747 (1153)
T PLN03210 701 ---INLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETA-IEEFPSNL------------------------RLE 747 (1153)
T ss_pred ---CCCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCc-cccccccc------------------------ccc
Confidence 1467788888888877776653 24577888887753 55554211 146
Q ss_pred cceeeeeccccccccccc-----cCcccccccceEeEeec-CCccccchHHHhhcCccceeEEE-ccceeEeccccchhh
Q 000945 776 KLEELKLSGKDIAMICQS-----QFPKHIFRNLKNLEVVN-DESENFRIGFLERFHNLEKLELR-WSSYKEIFSNEEIVE 848 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~-----~~~~~~~~~L~~L~l~~-~~~~~~p~~~l~~l~~L~~L~l~-c~~l~~~~~~~~~~~ 848 (1212)
+|++|.+.++....++.. ......+++|+.|++++ +.+..+|.. ++++++|+.|+|+ |++++.+|...
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~---- 822 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI---- 822 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC----
Confidence 677776654322222110 01112346788888888 456677776 7889999999998 88888776432
Q ss_pred ccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhh
Q 000945 849 HAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTA 928 (1212)
Q Consensus 849 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 928 (1212)
.+++|+.|++++|..+..++. ..++|+.|+++++ .++.+|.++..+++|+.|++++|++|+.+|. .+
T Consensus 823 ---~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~ 889 (1153)
T PLN03210 823 ---NLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NI 889 (1153)
T ss_pred ---CccccCEEECCCCCccccccc-------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc--cc
Confidence 378899999999988877632 2467888898874 5678888888889999999999999988873 45
Q ss_pred cccccccEEEecCcchhhHhh
Q 000945 929 KSLVCLTKLRIDGCRMLTEII 949 (1212)
Q Consensus 929 ~~l~~L~~L~i~~c~~l~~~~ 949 (1212)
..+++|+.|++++|..+..++
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccCCCeeecCCCccccccc
Confidence 678888888999998776654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3e-24 Score=221.77 Aligned_cols=277 Identities=17% Similarity=0.150 Sum_probs=140.3
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|..|++.+|+++..+.+. ..+.+|.+|++++ +.++.+|+. +|++ .|+.|.+.|++ ++.|-.+-... .
T Consensus 251 L~~l~vLDLRdNklke~Pde~---clLrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~ii~~--g 320 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKEVPDEI---CLLRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREIISK--G 320 (565)
T ss_pred cccceeeeccccccccCchHH---HHhhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHHHcc--c
Confidence 477788888888777776655 3477788888887 477787776 7888 89999998887 55542110000 0
Q ss_pred ccccCCccceeec-ccCCccce----------eccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCcccc
Q 000945 697 TTFVFPKVTFLKL-WNLSELKT----------FYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQ 765 (1212)
Q Consensus 697 ~~~~~~~L~~L~l-~~~~~L~~----------~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~ 765 (1212)
....+..|+.=.- .+...-+. +... ......+.+.|++++ .+++.+|... |....
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~-~qlt~VPdEV--fea~~---------- 386 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSD-KQLTLVPDEV--FEAAK---------- 386 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccc-cccccCCHHH--HHHhh----------
Confidence 1111111111000 00100000 0000 000123345555555 3455444111 11000
Q ss_pred ceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccc
Q 000945 766 ALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEE 845 (1212)
Q Consensus 766 ~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~ 845 (1212)
-.-.+..++++|.+..++. ....+..+.+.-+.++...++++..+..+++|..|+++.|-+.++|..
T Consensus 387 --------~~~Vt~VnfskNqL~elPk---~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-- 453 (565)
T KOG0472|consen 387 --------SEIVTSVNFSKNQLCELPK---RLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-- 453 (565)
T ss_pred --------hcceEEEecccchHhhhhh---hhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh--
Confidence 1124455666666666542 111222232222222333334444466667777777766666555432
Q ss_pred hhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccc
Q 000945 846 IVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVT 924 (1212)
Q Consensus 846 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~ 924 (1212)
++.+..|+.|+|+.+ ....+ |..+..+..||.+-.+ ...+++++++ +.++.+|+.|++.+ +.+..+|
T Consensus 454 ----~~~lv~Lq~LnlS~N-rFr~l----P~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IP- 521 (565)
T KOG0472|consen 454 ----MGSLVRLQTLNLSFN-RFRML----PECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIP- 521 (565)
T ss_pred ----hhhhhhhheeccccc-ccccc----hHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcceeccCC-CchhhCC-
Confidence 223555677766664 23333 3333333334443333 3455666655 66677777777766 4666666
Q ss_pred hhhhcccccccEEEecCcc
Q 000945 925 SSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 925 ~~~~~~l~~L~~L~i~~c~ 943 (1212)
..++++++|+.|.+++++
T Consensus 522 -p~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 522 -PILGNMTNLRHLELDGNP 539 (565)
T ss_pred -hhhccccceeEEEecCCc
Confidence 556777777777777766
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-21 Score=210.60 Aligned_cols=229 Identities=19% Similarity=0.266 Sum_probs=152.5
Q ss_pred cceeeeccCCccccc-cHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.-+.|++++|.+..+ +..|.++.+|+.+++.+| .+..||.. ..-..+|+.|++.+|.+. ...-++|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f-~~~sghl~~L~L~~N~I~-----------sv~se~L 145 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRF-GHESGHLEKLDLRHNLIS-----------SVTSEEL 145 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccc-cccccceeEEeeeccccc-----------cccHHHH
Confidence 456799999998888 667889999999999999 89999984 445556999999999886 3345678
Q ss_pred hcCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCC
Q 000945 345 KLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPG 424 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~ 424 (1212)
..++-|+.|+++.|.++.+|..-.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sf-------------------------------------------------------- 169 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSF-------------------------------------------------------- 169 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCC--------------------------------------------------------
Confidence 888888889988887766554221
Q ss_pred cccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecC
Q 000945 425 IKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNC 504 (1212)
Q Consensus 425 ~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c 504 (1212)
. .-.++++|++.+|. +..+ . ...+..|.+|-+|.|++
T Consensus 170 --------p--~~~ni~~L~La~N~-It~l-----------------------------~--~~~F~~lnsL~tlkLsr- 206 (873)
T KOG4194|consen 170 --------P--AKVNIKKLNLASNR-ITTL-----------------------------E--TGHFDSLNSLLTLKLSR- 206 (873)
T ss_pred --------C--CCCCceEEeecccc-cccc-----------------------------c--cccccccchheeeeccc-
Confidence 0 12467777777662 1111 0 11234566788888887
Q ss_pred CCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHh
Q 000945 505 DKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQT 584 (1212)
Q Consensus 505 ~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 584 (1212)
+.++.+|.. .+.+|++|+.|++..+. ++.+..
T Consensus 207 NrittLp~r-~Fk~L~~L~~LdLnrN~-irive~---------------------------------------------- 238 (873)
T KOG4194|consen 207 NRITTLPQR-SFKRLPKLESLDLNRNR-IRIVEG---------------------------------------------- 238 (873)
T ss_pred CcccccCHH-Hhhhcchhhhhhccccc-eeeehh----------------------------------------------
Confidence 678888763 46778888888887643 332211
Q ss_pred hhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchh
Q 000945 585 RLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSS 664 (1212)
Q Consensus 585 ~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 664 (1212)
-.+..+++|+.|.+..|++..+-.+.|- .+.++++|+|.. +++..+...
T Consensus 239 ---------------------------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~-N~l~~vn~g- 287 (873)
T KOG4194|consen 239 ---------------------------LTFQGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLET-NRLQAVNEG- 287 (873)
T ss_pred ---------------------------hhhcCchhhhhhhhhhcCcccccCccee--eecccceeeccc-chhhhhhcc-
Confidence 0112235666666666655555555443 367777777776 456665443
Q ss_pred hhhccCCCcEEEecccccccee
Q 000945 665 MIRNFVQLEHLEICYCSSLESI 686 (1212)
Q Consensus 665 ~l~~l~~L~~L~l~~~~~l~~i 686 (1212)
++.+|++|+.|+++++. +..|
T Consensus 288 ~lfgLt~L~~L~lS~Na-I~ri 308 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNA-IQRI 308 (873)
T ss_pred cccccchhhhhccchhh-hhee
Confidence 34568888888888776 5555
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.2e-23 Score=217.19 Aligned_cols=488 Identities=18% Similarity=0.154 Sum_probs=265.0
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
.+..|.++.|.+..+-..+.+|..|.+|++.+| .+..+|.. ++.+..++.|++++|.+. ..++++.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls------------~lp~~i~ 111 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLS------------ELPEQIG 111 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHh------------hccHHHh
Confidence 788889999999999888999999999999999 78889987 799999999999988873 4667777
Q ss_pred cCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCc
Q 000945 346 LLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 425 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~ 425 (1212)
.+..|.+++.+++....+|.++.
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~--------------------------------------------------------- 134 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIG--------------------------------------------------------- 134 (565)
T ss_pred hhhhhhhhhccccceeecCchHH---------------------------------------------------------
Confidence 77778778877776655554431
Q ss_pred ccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCC
Q 000945 426 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 505 (1212)
Q Consensus 426 ~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~ 505 (1212)
.+..+..|+-.+| ++ ...|..++++.+|..|++.+ +
T Consensus 135 ----------~~~~l~dl~~~~N-~i--------------------------------~slp~~~~~~~~l~~l~~~~-n 170 (565)
T KOG0472|consen 135 ----------RLLDLEDLDATNN-QI--------------------------------SSLPEDMVNLSKLSKLDLEG-N 170 (565)
T ss_pred ----------HHhhhhhhhcccc-cc--------------------------------ccCchHHHHHHHHHHhhccc-c
Confidence 0111111111111 11 12233344445555555555 3
Q ss_pred CCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhh
Q 000945 506 KLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTR 585 (1212)
Q Consensus 506 ~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 585 (1212)
+++.+|+. .-++..|++|+...+ .++.+|. +++.+.+|..|++.... +...
T Consensus 171 ~l~~l~~~--~i~m~~L~~ld~~~N-~L~tlP~------------~lg~l~~L~~LyL~~Nk-i~~l------------- 221 (565)
T KOG0472|consen 171 KLKALPEN--HIAMKRLKHLDCNSN-LLETLPP------------ELGGLESLELLYLRRNK-IRFL------------- 221 (565)
T ss_pred chhhCCHH--HHHHHHHHhcccchh-hhhcCCh------------hhcchhhhHHHHhhhcc-cccC-------------
Confidence 55555432 122555566555442 2555555 44555555544443210 0000
Q ss_pred hcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhh
Q 000945 586 LKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSM 665 (1212)
Q Consensus 586 l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 665 (1212)
.++..++.|++|+++.|.+..+..... ..+++|..|++++ ++++++|..
T Consensus 222 --------------------------Pef~gcs~L~Elh~g~N~i~~lpae~~--~~L~~l~vLDLRd-Nklke~Pde-- 270 (565)
T KOG0472|consen 222 --------------------------PEFPGCSLLKELHVGENQIEMLPAEHL--KHLNSLLVLDLRD-NKLKEVPDE-- 270 (565)
T ss_pred --------------------------CCCCccHHHHHHHhcccHHHhhHHHHh--cccccceeeeccc-cccccCchH--
Confidence 011234668888888886655443332 2689999999999 589998776
Q ss_pred hhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceecc----CCCcCCCCCccEEEEecCCCc
Q 000945 666 IRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYP----GTHTSKWPMLKKLEVYGCDKV 741 (1212)
Q Consensus 666 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~----~~~~~~~~~L~~L~i~~C~~L 741 (1212)
+.-+.+|++|+++++. +..++. ..+.+ .|+.|.+.+.|- +.+-. .+.... |++|.=
T Consensus 271 ~clLrsL~rLDlSNN~-is~Lp~--------sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~v---LKyLrs------ 330 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNND-ISSLPY--------SLGNL-HLKFLALEGNPL-RTIRREIISKGTQEV---LKYLRS------ 330 (565)
T ss_pred HHHhhhhhhhcccCCc-cccCCc--------ccccc-eeeehhhcCCch-HHHHHHHHcccHHHH---HHHHHH------
Confidence 6779999999999887 666643 33345 677777776652 11110 000000 111100
Q ss_pred ccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccC-cccccccceEeEeecCCccccchHH
Q 000945 742 KIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQF-PKHIFRNLKNLEVVNDESENFRIGF 820 (1212)
Q Consensus 742 ~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~p~~~ 820 (1212)
.+...|++..+.- +- ...+ ..+..+ ......+.+.|++++..++.+|..+
T Consensus 331 -----------~~~~dglS~se~~----------~e-------~~~t-~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEV 381 (565)
T KOG0472|consen 331 -----------KIKDDGLSQSEGG----------TE-------TAMT-LPSESFPDIYAIITTKILDVSDKQLTLVPDEV 381 (565)
T ss_pred -----------hhccCCCCCCccc----------cc-------ccCC-CCCCcccchhhhhhhhhhcccccccccCCHHH
Confidence 0011111110000 00 0000 000000 0112334555555555556666655
Q ss_pred HhhcC--ccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccc
Q 000945 821 LERFH--NLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINL 898 (1212)
Q Consensus 821 l~~l~--~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 898 (1212)
|.... -....+++-|.+.++|. .+..+..+.+.-+.....+..+ |..+..++.|..|++++ +.+.++
T Consensus 382 fea~~~~~Vt~VnfskNqL~elPk------~L~~lkelvT~l~lsnn~isfv----~~~l~~l~kLt~L~L~N-N~Ln~L 450 (565)
T KOG0472|consen 382 FEAAKSEIVTSVNFSKNQLCELPK------RLVELKELVTDLVLSNNKISFV----PLELSQLQKLTFLDLSN-NLLNDL 450 (565)
T ss_pred HHHhhhcceEEEecccchHhhhhh------hhHHHHHHHHHHHhhcCccccc----hHHHHhhhcceeeeccc-chhhhc
Confidence 54332 13344444555554432 1111222222222222222222 34556666777777775 356667
Q ss_pred cCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCccc
Q 000945 899 VPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTS 978 (1212)
Q Consensus 899 p~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 978 (1212)
|..++.+..|+.|+|+.+ ..+.+| ....-+..|+.+-.+++. +.+++.+ ....+.+|..|++.+. .++.
T Consensus 451 P~e~~~lv~Lq~LnlS~N-rFr~lP--~~~y~lq~lEtllas~nq-i~~vd~~------~l~nm~nL~tLDL~nN-dlq~ 519 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFN-RFRMLP--ECLYELQTLETLLASNNQ-IGSVDPS------GLKNMRNLTTLDLQNN-DLQQ 519 (565)
T ss_pred chhhhhhhhhheeccccc-ccccch--HHHhhHHHHHHHHhcccc-ccccChH------HhhhhhhcceeccCCC-chhh
Confidence 777777777777777763 555555 333333334444333332 4444422 2345667777777665 4777
Q ss_pred ccCCCceeecCCccEEEeccCCC
Q 000945 979 FCSGNYTLKFPSLEDLFVIECPK 1001 (1212)
Q Consensus 979 l~~~~~~~~~~sL~~L~i~~C~~ 1001 (1212)
+|.... .+++|++|++.|.|-
T Consensus 520 IPp~Lg--nmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 520 IPPILG--NMTNLRHLELDGNPF 540 (565)
T ss_pred CChhhc--cccceeEEEecCCcc
Confidence 777666 357888888887663
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=4.3e-22 Score=216.05 Aligned_cols=182 Identities=20% Similarity=0.205 Sum_probs=113.6
Q ss_pred cccceEeEeec--CCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCC
Q 000945 800 FRNLKNLEVVN--DESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKL 877 (1212)
Q Consensus 800 ~~~L~~L~l~~--~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 877 (1212)
+++|+.|++++ ..+..+|.. +..+.+|..+|++||+|..+| +++-.+++|+.|+++++. ++.+ ...
T Consensus 196 mtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vP------ecly~l~~LrrLNLS~N~-iteL----~~~ 263 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVP------ECLYKLRNLRRLNLSGNK-ITEL----NMT 263 (1255)
T ss_pred chhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCcch------HHHhhhhhhheeccCcCc-eeee----ecc
Confidence 44455555555 233444544 555666666666666665554 233345666666666632 3333 122
Q ss_pred ccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccc
Q 000945 878 DSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAE 957 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 957 (1212)
.+.-.+|++|++|+ +.++.+|..+..++.|+.|.+.+ ++|+.-..++.++.|.+|+.+...++. ++-+|.
T Consensus 264 ~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE------- 333 (1255)
T KOG0444|consen 264 EGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE------- 333 (1255)
T ss_pred HHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCch-------
Confidence 33445777778877 45777888888888888888776 455543333666777888877776654 655552
Q ss_pred cceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccC
Q 000945 958 DEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFS 1006 (1212)
Q Consensus 958 ~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp 1006 (1212)
....+..|+.|.+.. ..|..+|...+- ++-|+.||+++.|++..=|
T Consensus 334 glcRC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence 344567788887764 467788887763 4888888888888886444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.2e-21 Score=206.28 Aligned_cols=346 Identities=18% Similarity=0.180 Sum_probs=190.9
Q ss_pred ccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccC
Q 000945 468 LLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDC 547 (1212)
Q Consensus 468 ~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 547 (1212)
.-+.|+++++ .+..| .+..+.++++|+.+++.+ +.|+.+| .+.....+|+.|++.++. +.++..
T Consensus 79 ~t~~LdlsnN-kl~~i--d~~~f~nl~nLq~v~l~~-N~Lt~IP--~f~~~sghl~~L~L~~N~-I~sv~s--------- 142 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHI--DFEFFYNLPNLQEVNLNK-NELTRIP--RFGHESGHLEKLDLRHNL-ISSVTS--------- 142 (873)
T ss_pred ceeeeecccc-ccccC--cHHHHhcCCcceeeeecc-chhhhcc--cccccccceeEEeeeccc-cccccH---------
Confidence 3345666554 23322 122345667777777766 5666666 333445557777776643 443332
Q ss_pred CccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccc
Q 000945 548 HEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCA 627 (1212)
Q Consensus 548 ~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~ 627 (1212)
+.+..++.|++|+|+.. .+..++. ..+..-.++++|+|++
T Consensus 143 --e~L~~l~alrslDLSrN-~is~i~~-------------------------------------~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 143 --EELSALPALRSLDLSRN-LISEIPK-------------------------------------PSFPAKVNIKKLNLAS 182 (873)
T ss_pred --HHHHhHhhhhhhhhhhc-hhhcccC-------------------------------------CCCCCCCCceEEeecc
Confidence 34556667777766541 0111000 0011126799999999
Q ss_pred cccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCcccee
Q 000945 628 ISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFL 707 (1212)
Q Consensus 628 ~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L 707 (1212)
|.++.+-.+.|. .|.+|..|.|++ ++++.+|+..| .+||.|+.|+|..+. ++.+.. ..+..+++|+.|
T Consensus 183 N~It~l~~~~F~--~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN~-irive~-------ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 183 NRITTLETGHFD--SLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRNR-IRIVEG-------LTFQGLPSLQNL 250 (873)
T ss_pred cccccccccccc--ccchheeeeccc-CcccccCHHHh-hhcchhhhhhccccc-eeeehh-------hhhcCchhhhhh
Confidence 988877766665 577899999988 57888877654 779999999998776 555421 234457777777
Q ss_pred ecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccc
Q 000945 708 KLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDI 787 (1212)
Q Consensus 708 ~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~ 787 (1212)
.+.... +..+..|. ...+..++.|++... ++..+ ..+++ ..+++|+.|++|+|.+
T Consensus 251 klqrN~-I~kL~DG~-Fy~l~kme~l~L~~N-~l~~v----------n~g~l------------fgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 251 KLQRND-ISKLDDGA-FYGLEKMEHLNLETN-RLQAV----------NEGWL------------FGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhhhcC-cccccCcc-eeeecccceeecccc-hhhhh----------hcccc------------cccchhhhhccchhhh
Confidence 776542 12222222 224555666666552 33332 11111 1256777777777777
Q ss_pred cccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccc
Q 000945 788 AMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDL 867 (1212)
Q Consensus 788 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 867 (1212)
..+... .....++|++|+|++|.+..++++.|..+..|+.|+|+.|.+..+-. ..+..+.+|+.|+++++. +
T Consensus 306 ~rih~d--~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-----~af~~lssL~~LdLr~N~-l 377 (873)
T KOG4194|consen 306 QRIHID--SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-----GAFVGLSSLHKLDLRSNE-L 377 (873)
T ss_pred heeecc--hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh-----hHHHHhhhhhhhcCcCCe-E
Confidence 666531 22235667777777777777777777777777777777666654421 123335666666666532 1
Q ss_pred hhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeecc
Q 000945 868 MYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWY 915 (1212)
Q Consensus 868 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~ 915 (1212)
.-.-++....+..+++|+.|++.++ .+.++|.. +..|.+|+.|++.+
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 1111112223334555555555542 34444422 23445555555544
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=223.83 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=80.5
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
+|+.||++.|.+...|..|..+.+|+.|+++.| .+..+|.+ ..++++|++|.+.+|... ..+..+.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s-~~~~~~l~~lnL~~n~l~------------~lP~~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSS-CSNMRNLQYLNLKNNRLQ------------SLPASIS 111 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchh-hhhhhcchhheeccchhh------------cCchhHH
Confidence 699999999999999999999999999999999 89999987 899999999999999884 5677888
Q ss_pred cCCCCCcceeeecccccCCCCc
Q 000945 346 LLSHLTTLEIQICDAMILPKGL 367 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~~~ 367 (1212)
.+.+|+.|++++|....+|.-+
T Consensus 112 ~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred hhhcccccccchhccCCCchhH
Confidence 9999999999999988888754
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.5e-21 Score=210.12 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=82.5
Q ss_pred cCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccC
Q 000945 487 QLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFL 566 (1212)
Q Consensus 487 ~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 566 (1212)
|.....+..++.|.|.. .+|.++| ..++.|.+|++|.++++. +..+.. ++..+|.||.+.+.+.
T Consensus 25 P~~v~qMt~~~WLkLnr-t~L~~vP--eEL~~lqkLEHLs~~HN~-L~~vhG------------ELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNR-TKLEQVP--EELSRLQKLEHLSMAHNQ-LISVHG------------ELSDLPRLRSVIVRDN 88 (1255)
T ss_pred chhHHHhhheeEEEech-hhhhhCh--HHHHHHhhhhhhhhhhhh-hHhhhh------------hhccchhhHHHhhhcc
Confidence 33345566666666665 5666666 456666667776666643 444443 5566666666655442
Q ss_pred Ccccc--cccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCc
Q 000945 567 PQLTS--FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQ 644 (1212)
Q Consensus 567 ~~l~~--~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~ 644 (1212)
. ++. ++.. .-++..|...+++..+ +..++..+....++-+|+||+|++..++...|. .+.
T Consensus 89 ~-LKnsGiP~d-------iF~l~dLt~lDLShNq--------L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLt 150 (1255)
T KOG0444|consen 89 N-LKNSGIPTD-------IFRLKDLTILDLSHNQ--------LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLT 150 (1255)
T ss_pred c-cccCCCCch-------hcccccceeeecchhh--------hhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhH
Confidence 1 111 1110 0011112111221111 112223334445666677777766665544332 456
Q ss_pred CccEEEEecCCCccccCchhhhhccCCCcEEEecccc
Q 000945 645 NLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 681 (1212)
Q Consensus 645 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 681 (1212)
.|-.|+|++ +++..+||. +..|.+|+.|.|++++
T Consensus 151 DLLfLDLS~-NrLe~LPPQ--~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 151 DLLFLDLSN-NRLEMLPPQ--IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hHhhhcccc-chhhhcCHH--HHHHhhhhhhhcCCCh
Confidence 666667766 466666665 5667777777777666
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.1e-21 Score=221.87 Aligned_cols=256 Identities=18% Similarity=0.117 Sum_probs=132.5
Q ss_pred eeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCC
Q 000945 623 LELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFP 702 (1212)
Q Consensus 623 L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 702 (1212)
|++++|.+..... ..+++|+.|+... +.+..+ --..++|+.|+.++|+.. .+.. .....
T Consensus 183 ldLr~N~~~~~dl-----s~~~~l~~l~c~r-n~ls~l-----~~~g~~l~~L~a~~n~l~-~~~~---------~p~p~ 241 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDL-----SNLANLEVLHCER-NQLSEL-----EISGPSLTALYADHNPLT-TLDV---------HPVPL 241 (1081)
T ss_pred eecccchhhhhhh-----hhccchhhhhhhh-cccceE-----EecCcchheeeeccCcce-eecc---------ccccc
Confidence 6666664432211 1355555555433 344433 123466777777777633 2211 11234
Q ss_pred ccceeecccC--CccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceee
Q 000945 703 KVTFLKLWNL--SELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEEL 780 (1212)
Q Consensus 703 ~L~~L~l~~~--~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L 780 (1212)
+|++++++.. .++.+|. ..+++|+.+.+... .|..+|... ....+|+.|
T Consensus 242 nl~~~dis~n~l~~lp~wi-----~~~~nle~l~~n~N-~l~~lp~ri-----------------------~~~~~L~~l 292 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWI-----GACANLEALNANHN-RLVALPLRI-----------------------SRITSLVSL 292 (1081)
T ss_pred cceeeecchhhhhcchHHH-----HhcccceEecccch-hHHhhHHHH-----------------------hhhhhHHHH
Confidence 5666665532 2222221 24677777776663 445543111 015678888
Q ss_pred eeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCc-cceeEEEccceeEeccccchh------------
Q 000945 781 KLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHN-LEKLELRWSSYKEIFSNEEIV------------ 847 (1212)
Q Consensus 781 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~-L~~L~l~c~~l~~~~~~~~~~------------ 847 (1212)
.+..|++..+++ ....+.+|++|+|..|.+.++|..++.-+.. |..|+.+|+.+...+..++..
T Consensus 293 ~~~~nel~yip~---~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 293 SAAYNELEYIPP---FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HhhhhhhhhCCC---cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 888888888764 2335788888888888888888877766655 777777777777665433210
Q ss_pred -------hccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcc
Q 000945 848 -------EHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLM 920 (1212)
Q Consensus 848 -------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 920 (1212)
..+.+..+|+.|+++++. |.+||. ..+.++..|++|++|| ++|+.+|..+..+..|++|...+ +.|.
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpa---s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPA---SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred cccccchhhhccccceeeeeecccc-cccCCH---HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Ccee
Confidence 111223444555554421 333321 2233444455555554 24444554444455555554444 2444
Q ss_pred cccchhhhcccccccEEEec
Q 000945 921 NLVTSSTAKSLVCLTKLRID 940 (1212)
Q Consensus 921 ~l~~~~~~~~l~~L~~L~i~ 940 (1212)
.+| -+..+++|+.++++
T Consensus 444 ~fP---e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 444 SFP---ELAQLPQLKVLDLS 460 (1081)
T ss_pred ech---hhhhcCcceEEecc
Confidence 443 12334555555554
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.64 E-value=5.6e-16 Score=171.97 Aligned_cols=111 Identities=34% Similarity=0.501 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHhCC--CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc-
Q 000945 154 RKSILNDALDALSN--PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC- 230 (1212)
Q Consensus 154 r~~~~~~l~~~L~~--~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~- 230 (1212)
||.++++|.+.|.+ ++.++|+|+||||+||||||+.+|++..++.+|+.++|+.+++.++...++++|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999986 789999999999999999999999997788999999999999999999999999999988732
Q ss_pred ---CCChhHHHHHHHHHHHcCCcEE-EecCccccccccc
Q 000945 231 ---EGSESERAMVLCGLLKKGKKIL-VLDNIWTSLDLDK 265 (1212)
Q Consensus 231 ---~~~~~~~~~~l~~~L~~~kr~L-VLDDVw~~~~~~~ 265 (1212)
..+..+....+++.|.+ +++| ||||||+...|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~ 118 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEE 118 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH--
T ss_pred cccccccccccccchhhhcc-ccceeeeeeecccccccc
Confidence 34566789999999996 8999 9999999998865
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.9e-13 Score=162.18 Aligned_cols=256 Identities=19% Similarity=0.134 Sum_probs=127.9
Q ss_pred cCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCC
Q 000945 644 QNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTH 723 (1212)
Q Consensus 644 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 723 (1212)
.+-..|+++++ .++.+|+. + .++|+.|++.++. ++.++. .+++|++|++.++ ++..++.
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~--l--~~~L~~L~L~~N~-Lt~LP~-----------lp~~Lk~LdLs~N-~LtsLP~--- 259 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDC--L--PAHITTLVIPDNN-LTSLPA-----------LPPELRTLEVSGN-QLTSLPV--- 259 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcc--h--hcCCCEEEccCCc-CCCCCC-----------CCCCCcEEEecCC-ccCcccC---
Confidence 34667888886 77787763 2 2578999998865 666532 1466777776664 4444432
Q ss_pred cCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccc
Q 000945 724 TSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNL 803 (1212)
Q Consensus 724 ~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L 803 (1212)
.+++|+.|++.+| .+..+|. .+++|+.|++++|.++.++. .+++|
T Consensus 260 --lp~sL~~L~Ls~N-~L~~Lp~--------------------------lp~~L~~L~Ls~N~Lt~LP~------~p~~L 304 (788)
T PRK15387 260 --LPPGLLELSIFSN-PLTHLPA--------------------------LPSGLCKLWIFGNQLTSLPV------LPPGL 304 (788)
T ss_pred --cccccceeeccCC-chhhhhh--------------------------chhhcCEEECcCCccccccc------ccccc
Confidence 2455666666665 2444420 13456666666666655532 13456
Q ss_pred eEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCc
Q 000945 804 KNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITEN 883 (1212)
Q Consensus 804 ~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~ 883 (1212)
+.|++++|.+..+|.. ..+|+.|+++.|.++.++.. +.+|+.|+++++ .+..+| . ...+
T Consensus 305 ~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~~LP~l---------p~~Lq~LdLS~N-~Ls~LP----~---lp~~ 363 (788)
T PRK15387 305 QELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPTL---------PSGLQELSVSDN-QLASLP----T---LPSE 363 (788)
T ss_pred ceeECCCCccccCCCC----cccccccccccCcccccccc---------ccccceEecCCC-ccCCCC----C---CCcc
Confidence 6666666655555531 23455555555555444321 345555555553 233332 1 1234
Q ss_pred ccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceecc
Q 000945 884 LESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFS 963 (1212)
Q Consensus 884 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~ 963 (1212)
|..|++++| .+..+|.. .++|+.|++++| .++.+|. ..++|+.|++++|. +..+|. .+.
T Consensus 364 L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~----------l~~ 422 (788)
T PRK15387 364 LYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM----------LPS 422 (788)
T ss_pred cceehhhcc-ccccCccc---ccccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc----------chh
Confidence 455555543 33444432 234555555553 4444431 12345555555544 333331 123
Q ss_pred chhhhhhccCCCcccccCCCceeecCCccEEEeccCC
Q 000945 964 KLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECP 1000 (1212)
Q Consensus 964 ~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~ 1000 (1212)
+|+.|+++++ .++.+|.... .+++|+.|++++++
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl~--~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESLI--HLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccC-cccccChHHh--hccCCCeEECCCCC
Confidence 4444555443 2444444332 23445555554444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=3.9e-13 Score=161.16 Aligned_cols=256 Identities=19% Similarity=0.124 Sum_probs=191.6
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
..-..|++++++++.++... .++|+.|++.+ ++++.+|. .+++|++|++++|. ++.++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-----~~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N~-LtsLP~--------- 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-----PAHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGNQ-LTSLPV--------- 259 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-----hcCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCCc-cCcccC---------
Confidence 44667899999887665432 45799999998 47888765 26899999999984 777742
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
.+++|+.|++.++. +..++. .++.|+.|++++| +++.+|. .+++|
T Consensus 260 --lp~sL~~L~Ls~N~-L~~Lp~-----lp~~L~~L~Ls~N-~Lt~LP~--------------------------~p~~L 304 (788)
T PRK15387 260 --LPPGLLELSIFSNP-LTHLPA-----LPSGLCKLWIFGN-QLTSLPV--------------------------LPPGL 304 (788)
T ss_pred --cccccceeeccCCc-hhhhhh-----chhhcCEEECcCC-ccccccc--------------------------ccccc
Confidence 25789999998874 555442 3467899999986 5666641 15789
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
+.|++++|.+..++. ...+|+.|++++|.+..+|.. ..+|+.|+++.|+|+.+|+. +.+|+
T Consensus 305 ~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l---------p~~L~ 365 (788)
T PRK15387 305 QELSVSDNQLASLPA------LPSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLASLPTL---------PSELY 365 (788)
T ss_pred ceeECCCCccccCCC------CcccccccccccCcccccccc----ccccceEecCCCccCCCCCC---------Ccccc
Confidence 999999999988753 235788999999999988852 35899999999999887642 57888
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEE
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKL 937 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 937 (1212)
.|+++++ .+..++ . ...+|+.|++++| .++.+|.. .++|+.|++++| .++.+|. . +.+|+.|
T Consensus 366 ~L~Ls~N-~L~~LP----~---l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~--l---~~~L~~L 427 (788)
T PRK15387 366 KLWAYNN-RLTSLP----A---LPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPM--L---PSGLLSL 427 (788)
T ss_pred eehhhcc-ccccCc----c---cccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCc--c---hhhhhhh
Confidence 9988874 355553 2 2357999999986 56678753 478999999996 6888873 2 3468889
Q ss_pred EecCcchhhHhhccCccccccceeccchhhhhhccCC
Q 000945 938 RIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 938 ~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
++++|. +..+|. ....+++|+.|++++++
T Consensus 428 ~Ls~Nq-Lt~LP~-------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 428 SVYRNQ-LTRLPE-------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhccCc-ccccCh-------HHhhccCCCeEECCCCC
Confidence 999877 777774 23457889999999886
No 17
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.8e-13 Score=110.68 Aligned_cols=67 Identities=33% Similarity=0.463 Sum_probs=62.3
Q ss_pred cceEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhc-CceEEE
Q 000945 1115 TKQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQL-CATELV 1181 (1212)
Q Consensus 1115 ~~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~-~~~~~~ 1181 (1212)
.+++.+++|+|||+||+++|++.+.+++||+++.+|.++++|||.|++||..|+++++|++ +++..+
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 4678999999999999999999999999999999999999999999999999999999988 455554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=3.2e-12 Score=154.75 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccc
Q 000945 671 QLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLR 750 (1212)
Q Consensus 671 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 750 (1212)
+...|+++++. +..++. ...+.|+.|++.++ ++..++.. .+++|+.|++++| +++.+|...
T Consensus 179 ~~~~L~L~~~~-LtsLP~----------~Ip~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l-- 239 (754)
T PRK15370 179 NKTELRLKILG-LTTIPA----------CIPEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSN-QLTSIPATL-- 239 (754)
T ss_pred CceEEEeCCCC-cCcCCc----------ccccCCcEEEecCC-CCCcCChh----hccCCCEEECCCC-ccccCChhh--
Confidence 45677776654 555432 11345666666554 34444332 1245566666554 344443110
Q ss_pred hhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCcccee
Q 000945 751 FQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKL 830 (1212)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L 830 (1212)
+++|+.|++++|.+..++. ...++|+.|++++|.+..+|..+ .++|+.|
T Consensus 240 -----------------------~~~L~~L~Ls~N~L~~LP~-----~l~s~L~~L~Ls~N~L~~LP~~l---~~sL~~L 288 (754)
T PRK15370 240 -----------------------PDTIQEMELSINRITELPE-----RLPSALQSLDLFHNKISCLPENL---PEELRYL 288 (754)
T ss_pred -----------------------hccccEEECcCCccCcCCh-----hHhCCCCEEECcCCccCcccccc---CCCCcEE
Confidence 2345555555555554421 11234555555555555554432 1345555
Q ss_pred EEEccceeEe
Q 000945 831 ELRWSSYKEI 840 (1212)
Q Consensus 831 ~l~c~~l~~~ 840 (1212)
+++.|+|+.+
T Consensus 289 ~Ls~N~Lt~L 298 (754)
T PRK15370 289 SVYDNSIRTL 298 (754)
T ss_pred ECCCCccccC
Confidence 5554444443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=7.8e-12 Score=151.35 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=160.0
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
.+...|++++++++.++... .++|+.|+|+++ .++.+|.. ..++|++|++++|. ++.++.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-----p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~--------- 237 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-----PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQ-LTSIPA--------- 237 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-----ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCc-cccCCh---------
Confidence 45667778777666554321 356888888775 67776552 23588888888775 666532
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
..+++|+.|.++++. +..++.. ...+|+.|++++ +++..+|.. .+++|
T Consensus 238 -~l~~~L~~L~Ls~N~-L~~LP~~----l~s~L~~L~Ls~-N~L~~LP~~-------------------------l~~sL 285 (754)
T PRK15370 238 -TLPDTIQEMELSINR-ITELPER----LPSALQSLDLFH-NKISCLPEN-------------------------LPEEL 285 (754)
T ss_pred -hhhccccEEECcCCc-cCcCChh----HhCCCCEEECcC-CccCccccc-------------------------cCCCC
Confidence 124567888887764 4444432 134688888874 466666421 13578
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
+.|++++|.++.++. ...++|+.|++++|.+..+|... .++|+.|+++.|.++.++.. .+++|+
T Consensus 286 ~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~--------l~~sL~ 349 (754)
T PRK15370 286 RYLSVYDNSIRTLPA-----HLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPAS--------LPPELQ 349 (754)
T ss_pred cEEECCCCccccCcc-----cchhhHHHHHhcCCccccCCccc---cccceeccccCCccccCChh--------hcCccc
Confidence 888888888776642 11246888888888888777543 36788888886677765431 157888
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccch--hhhccccccc
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTS--STAKSLVCLT 935 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~ 935 (1212)
.|++++|. +..++ ..+ .++|+.|++++| .+..+|+.+ ..+|+.|++++| ++..+|.. .....++++.
T Consensus 350 ~L~Ls~N~-L~~LP----~~l--p~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 350 VLDVSKNQ-ITVLP----ETL--PPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred EEECCCCC-CCcCC----hhh--cCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCcc
Confidence 88888864 55553 222 357888888886 466777654 347888888884 67777631 2333456778
Q ss_pred EEEecCcc
Q 000945 936 KLRIDGCR 943 (1212)
Q Consensus 936 ~L~i~~c~ 943 (1212)
.|++.+++
T Consensus 419 ~L~L~~Np 426 (754)
T PRK15370 419 RIIVEYNP 426 (754)
T ss_pred EEEeeCCC
Confidence 88888876
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-13 Score=143.49 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=35.9
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEE
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELR 833 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~ 833 (1212)
..-.+|++.+|.++.++.. .+.+| .+|+++|.+..+....|.+++.|..|-|+
T Consensus 444 ~d~telyl~gn~~~~vp~~-----~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlils 496 (498)
T KOG4237|consen 444 VDVTELYLDGNAITSVPDE-----LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILS 496 (498)
T ss_pred chhHHHhcccchhcccCHH-----HHhhh-hcccccCceehhhcccccchhhhheeEEe
Confidence 3456677777777776532 45666 77777777777776667777777766665
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=1.3e-11 Score=130.45 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=74.4
Q ss_pred cccceeecccc-ccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 618 PNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 618 ~~L~~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
..|+.|.++|+ .........+. ..++++++|.+.+|.++++..-.++...++.|++|++..|.+++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------ 210 (483)
T ss_pred cccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------
Confidence 45788888888 43333333333 46888888888888888776555566678888888888888777664321
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKV 741 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L 741 (1212)
....+|+|++|+++.|+....-........+..++.+...+|..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 122478888888888876665211111123444666666666543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.97 E-value=2.5e-11 Score=111.70 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=46.4
Q ss_pred cccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhc
Q 000945 467 LLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFT 538 (1212)
Q Consensus 467 ~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~ 538 (1212)
..|+.|.|+++. +...|..++++.+||.|.++. +.+-.+| ..++.|..|++|+|.++. +..+|.
T Consensus 127 ~tlralyl~dnd----fe~lp~dvg~lt~lqil~lrd-ndll~lp--keig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 127 TTLRALYLGDND----FEILPPDVGKLTNLQILSLRD-NDLLSLP--KEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred HHHHHHHhcCCC----cccCChhhhhhcceeEEeecc-CchhhCc--HHHHHHHHHHHHhcccce-eeecCh
Confidence 344445555442 133477788999999999988 5777787 668889999999998855 777776
No 23
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.87 E-value=6.3e-09 Score=84.00 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=52.6
Q ss_pred EEEE-EecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecC---HHHHHHHHHhhcC
Q 000945 1120 VLKL-EIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDID---AVPVVRKLRKQLC 1176 (1212)
Q Consensus 1120 ~~~v-~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d---~~~~~~~l~k~~~ 1176 (1212)
+++| +|+|++|++++.+++.+++||.++.+|...++++|.++.+ +.++.++|++.|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 4778 5999999999999999999999999999999999999955 4999999999886
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=1.5e-10 Score=121.21 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=67.6
Q ss_pred ccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccc
Q 000945 496 LKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQ 575 (1212)
Q Consensus 496 L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 575 (1212)
-..++|.. +.++.+|+ ..++.+++|+.|+++++. ++.|-. ..+..+.+|.+|-+.+..+++.++.+
T Consensus 69 tveirLdq-N~I~~iP~-~aF~~l~~LRrLdLS~N~-Is~I~p-----------~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPP-GAFKTLHRLRRLDLSKNN-ISFIAP-----------DAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred ceEEEecc-CCcccCCh-hhccchhhhceecccccc-hhhcCh-----------HhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 44455555 45666654 345666666666666643 554433 23445555555555555555555554
Q ss_pred cccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEEecC
Q 000945 576 VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC 654 (1212)
Q Consensus 576 ~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c 654 (1212)
.+..+..++.+... ...|+.+ ..+.+..+++|..|.+.+|.+..+..+.+. .+.+++.+++...
T Consensus 135 ~F~gL~slqrLllN-----------an~i~Ci--r~~al~dL~~l~lLslyDn~~q~i~~~tf~--~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLN-----------ANHINCI--RQDALRDLPSLSLLSLYDNKIQSICKGTFQ--GLAAIKTLHLAQN 198 (498)
T ss_pred HhhhHHHHHHHhcC-----------hhhhcch--hHHHHHHhhhcchhcccchhhhhhcccccc--chhccchHhhhcC
Confidence 44333333322110 0011111 012334567888888888876666665544 4666777776553
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=2.1e-10 Score=105.70 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=112.2
Q ss_pred cccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCcc
Q 000945 800 FRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS 879 (1212)
Q Consensus 800 ~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 879 (1212)
+++.+.|.+++|.+..+|+. +..+.+|+.|+++.|.++++|.. +..++.|+.|++.- ..+..+ |.+++
T Consensus 32 ~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~------issl~klr~lnvgm-nrl~~l----prgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTS------ISSLPKLRILNVGM-NRLNIL----PRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChh------hhhchhhhheecch-hhhhcC----ccccC
Confidence 45566666777777777776 66777777777777777776542 22356666666643 334444 77888
Q ss_pred ccCcccEEEEecCCCc-ccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCcccccc
Q 000945 880 ITENLESLEVWWCENL-INLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAED 958 (1212)
Q Consensus 880 ~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 958 (1212)
.++.|+.|++.+++.- .++|-.+..++.|+.|++++ +..+.+| .-.+.+++|+.|.++++. +-++|. .
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp--~dvg~lt~lqil~lrdnd-ll~lpk-------e 168 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILP--PDVGKLTNLQILSLRDND-LLSLPK-------E 168 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCC--hhhhhhcceeEEeeccCc-hhhCcH-------H
Confidence 8899999999886544 46777777778888899988 4777777 445888999999998887 556663 3
Q ss_pred ceeccchhhhhhccCCCcccccCC
Q 000945 959 EIVFSKLKWVSLERLENLTSFCSG 982 (1212)
Q Consensus 959 ~~~l~~L~~L~l~~~~~L~~l~~~ 982 (1212)
...+++|+.|+|.+. .|+-+|..
T Consensus 169 ig~lt~lrelhiqgn-rl~vlppe 191 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGN-RLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHhcccc-eeeecChh
Confidence 455788888888876 36666643
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.9e-10 Score=121.76 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=44.6
Q ss_pred CCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhc
Q 000945 438 LQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVR 517 (1212)
Q Consensus 438 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 517 (1212)
..||.|++.++..... +........+|++++|.+.+|.+++...... ....+++|++|++..|..+++..-.....
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3567777777654432 1212223455666666666665443321110 01234556666666665555542212334
Q ss_pred cCCCccEEEEccCcCc
Q 000945 518 GLPQLQTLNVINCKNM 533 (1212)
Q Consensus 518 ~L~~L~~L~l~~c~~l 533 (1212)
.+++|++|+++.|+.+
T Consensus 214 gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQI 229 (483)
T ss_pred hhhhHHHhhhccCchh
Confidence 4555555555555543
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=1.1e-08 Score=126.46 Aligned_cols=106 Identities=22% Similarity=0.138 Sum_probs=75.6
Q ss_pred ccccceeeccccc--cceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccc
Q 000945 617 FPNLETLELCAIS--TEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 694 (1212)
Q Consensus 617 ~~~L~~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 694 (1212)
.+.|.+|-+.++. +..+....|. .++.|+.|+|++|..+..+|.. ++.|-+|++|+++++. +.++|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t~-I~~LP~------ 612 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDTG-ISHLPS------ 612 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCCC-ccccch------
Confidence 3568888777773 3333222222 5889999999999899888775 7889999999998876 777753
Q ss_pred ccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEec
Q 000945 695 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYG 737 (1212)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~ 737 (1212)
....|..|.+|++..+..+..++.. ...+++|++|.+..
T Consensus 613 --~l~~Lk~L~~Lnl~~~~~l~~~~~i--~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 613 --GLGNLKKLIYLNLEVTGRLESIPGI--LLELQSLRVLRLPR 651 (889)
T ss_pred --HHHHHHhhheeccccccccccccch--hhhcccccEEEeec
Confidence 4556788888888887777766322 22477888887765
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=9e-09 Score=116.56 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=31.0
Q ss_pred cccCcccEEEEecCCCcc----cccCCc-cccCCccEEeeccccCcccc---cchhhhcccccccEEEecCcc
Q 000945 879 SITENLESLEVWWCENLI----NLVPSS-ASFKNLTTLELWYCQRLMNL---VTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c~~l~----~lp~~~-~~l~~L~~L~l~~c~~l~~l---~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
..+++|++|++++|..-. .+...+ ...+.|+.|++++| .++.. ........+++|+.+++++|.
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 345566666666654221 010000 01356777777776 33211 001233444667777777766
No 29
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.60 E-value=1.1e-07 Score=103.34 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=68.0
Q ss_pred HHHHhC-CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC--CHHHHHHHHHHHhcCcccCCChh--
Q 000945 161 ALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP--DVKRIQGDIADQLGLYICEGSES-- 235 (1212)
Q Consensus 161 l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~~~~~~-- 235 (1212)
+++++. =..-...+|+|.+|+||||||+.|||+...+ +|+.++||++++++ ++.++++.|...+-.........
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444444 1234568999999999999999999998865 99999999999999 88999999974221111111111
Q ss_pred -----HHHHHHHHHHHcCCcEE-EecCcccc
Q 000945 236 -----ERAMVLCGLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 236 -----~~~~~l~~~L~~~kr~L-VLDDVw~~ 260 (1212)
.....-+.....|++++ ++|++-.-
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11222222234579999 99998755
No 30
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=7.3e-08 Score=101.23 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=66.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC--CCHHHHHHHHH-----HHhcCcccC--CChhHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT--PDVKRIQGDIA-----DQLGLYICE--GSESERAM 239 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~--~~~~~l~~~il-----~~l~~~~~~--~~~~~~~~ 239 (1212)
.-..++|+|.+|+|||||++.+|++.... +|+.++|++++.+ +++.+++++|. .+++..... ........
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999988754 9999999999887 89999999993 333321000 00112233
Q ss_pred HHHHHHHcCCcEE-EecCccccc
Q 000945 240 VLCGLLKKGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 240 ~l~~~L~~~kr~L-VLDDVw~~~ 261 (1212)
........|++++ ++|++-.-.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhh
Confidence 3343334579999 999987553
No 31
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.52 E-value=3.2e-07 Score=75.39 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=56.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCC--eEEEEE-ecCHHHHHHHHHhhcCceEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDK--KMIVIG-DIDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~--~~~v~g-~~d~~~~~~~l~k~~~~~~~ 1180 (1212)
|+++.++|. |+|++|+.++.++|.+++||.+|.+|.+.+ .|++.+ .++..++.+++.+.|+.+..
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 356788997 999999999999999999999999999995 566677 48999999999999986653
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.7e-08 Score=106.37 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=122.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccch--HHHhhcCccceeEEEccceeEeccccchhhccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRI--GFLERFHNLEKLELRWSSYKEIFSNEEIVEHAE 851 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~ 851 (1212)
+..|+++.+.++........ .-...+++++.|||+.|.+..+-+ .+...+|+|+.|+|+.|.+...... ....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NTTL 194 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cchh
Confidence 67788888866554433211 223468899999999987766432 3567899999999998777543221 1122
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccc
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSL 931 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 931 (1212)
.+++|+.|.|+.|. +. |.+....+..+|+|+.|++.+|..+..-..+...+..|++|+|+++ ++.+.+.....+.+
T Consensus 195 ~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccc
Confidence 47889999999985 22 2222334456789999999988654433333456788999999985 45555655667788
Q ss_pred ccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCC
Q 000945 932 VCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 932 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
+.|+.|+++.|. +.++-.-+.+.-.....+++|++|.+...+
T Consensus 271 ~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 271 PGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 888888888876 444432211111122346666666666553
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=5.9e-08 Score=109.88 Aligned_cols=241 Identities=18% Similarity=0.043 Sum_probs=134.8
Q ss_pred cccceeeeeccccccccccc--cCcccccccceEeEeecCCccccc------hHHHhhcCccceeEEEccceeEeccccc
Q 000945 774 TSKLEELKLSGKDIAMICQS--QFPKHIFRNLKNLEVVNDESENFR------IGFLERFHNLEKLELRWSSYKEIFSNEE 845 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~~p------~~~l~~l~~L~~L~l~c~~l~~~~~~~~ 845 (1212)
+.+|+.|+++++.+...... .......++|++|+++++.+...+ ...+..+++|+.|+++.+.+....+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--- 98 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC--- 98 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH---
Confidence 45688888888776432110 012234567888888886555212 1235667889999998444432111
Q ss_pred hhhccccc---cccceEeeCCCccchhhhccCCCCcccc-CcccEEEEecCCCcc----cccCCccccCCccEEeecccc
Q 000945 846 IVEHAEML---TQVKSLKLWELSDLMYIWKQDSKLDSIT-ENLESLEVWWCENLI----NLVPSSASFKNLTTLELWYCQ 917 (1212)
Q Consensus 846 ~~~~~~~l---~~L~~L~l~~c~~l~~l~~~~~~~~~~l-~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~ 917 (1212)
..+..+ ++|++|++++|.--..-.......+..+ ++|+.|++++|.... .++..+..+++|+.|++++|.
T Consensus 99 --~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 --GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred --HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 111112 3489999988752210000001233455 788999999886442 233334556789999998864
Q ss_pred Ccccccch---hhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCccc-----ccCCCceeecC
Q 000945 918 RLMNLVTS---STAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTS-----FCSGNYTLKFP 989 (1212)
Q Consensus 918 ~l~~l~~~---~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~-----l~~~~~~~~~~ 989 (1212)
++.-... ..+..+++|+.|++++|. +...... ........+++|+.|++++|+ +.. +...... ..+
T Consensus 177 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~--~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~-~~~ 250 (319)
T cd00116 177 -IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS--ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS-PNI 250 (319)
T ss_pred -CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH--HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc-cCC
Confidence 4421111 122344589999999886 2211100 000112336789999998874 332 1111100 136
Q ss_pred CccEEEeccCCCc----cccCcCCcCCCccceEEeccCcc
Q 000945 990 SLEDLFVIECPKM----KIFSHRVLSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 990 sL~~L~i~~C~~l----~~lp~~~~~~~~L~~l~~~~~~~ 1025 (1212)
.|++|++.+|.-. ..++.....+++|+.+++++|..
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 8999999998532 22334444568899999987764
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.5e-08 Score=102.68 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=37.8
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchH-HHhhcCccceeEEEccceeE
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIG-FLERFHNLEKLELRWSSYKE 839 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~l~~l~~L~~L~l~c~~l~~ 839 (1212)
+|+|+.|++.+|....+ ...+...+..|+.|||++|.+..++.. ....++.|..|+++.+.+.+
T Consensus 221 fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred CCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence 67777777776652222 123444566777777777666666532 24567777777777444443
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=7.8e-07 Score=98.06 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=30.5
Q ss_pred hcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccccc
Q 000945 823 RFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV 899 (1212)
Q Consensus 823 ~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 899 (1212)
.+.+++.|+++.+.++.+|. .+.+|++|.+++|.++..++. .+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCcccccccc
Confidence 34555555555114544431 144556666665555555422 11 2355566666555555554
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=2.1e-06 Score=94.77 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=90.0
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccc
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSL 931 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 931 (1212)
.+.+++.|+|++| .++++| ...++|++|.+++|..++.+|..+ .++|+.|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------
Confidence 4688999999999 688874 134579999999999999998644 4799999999998888776
Q ss_pred ccccEEEecC--cchhhHhhccCccccccceeccchhhhhhccCCCc--ccccCCCceeecCCccEEEeccCCCccccCc
Q 000945 932 VCLTKLRIDG--CRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENL--TSFCSGNYTLKFPSLEDLFVIECPKMKIFSH 1007 (1212)
Q Consensus 932 ~~L~~L~i~~--c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L--~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~ 1007 (1212)
.+|+.|++.. |..+..+| ++|+.|.+.++... ..+| ..-+++|++|++.+|..+. +|.
T Consensus 112 ~sLe~L~L~~n~~~~L~~LP-------------ssLk~L~I~~~n~~~~~~lp----~~LPsSLk~L~Is~c~~i~-LP~ 173 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVP-------------NGLTSLSINSYNPENQARID----NLISPSLKTLSLTGCSNII-LPE 173 (426)
T ss_pred cccceEEeCCCCCcccccCc-------------chHhheeccccccccccccc----cccCCcccEEEecCCCccc-Ccc
Confidence 2377777754 33344444 66777777543211 1111 1124688888888887653 443
Q ss_pred CCcCCCccceEEecc
Q 000945 1008 RVLSTPRLREVRQNW 1022 (1212)
Q Consensus 1008 ~~~~~~~L~~l~~~~ 1022 (1212)
.+- .+|+.|+++.
T Consensus 174 ~LP--~SLk~L~ls~ 186 (426)
T PRK15386 174 KLP--ESLQSITLHI 186 (426)
T ss_pred ccc--ccCcEEEecc
Confidence 221 4677777653
No 37
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.25 E-value=3.7e-06 Score=92.32 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC--CCHHHHHHHHHHHhcCcccCCCh-------hHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT--PDVKRIQGDIADQLGLYICEGSE-------SERAM 239 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~-------~~~~~ 239 (1212)
.-..++|+|.+|.|||||++.+++....+ +|+..+||+++++ +++.++++.|+..+-...-.... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 44578999999999999999999988744 8999999999977 89999999996443211111111 11223
Q ss_pred HHHHHHHcCCcEE-EecCcccc
Q 000945 240 VLCGLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 240 ~l~~~L~~~kr~L-VLDDVw~~ 260 (1212)
..+.....|++++ ++|++-.-
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 3333334579999 99988654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=8.4e-07 Score=89.95 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=24.6
Q ss_pred cceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCC
Q 000945 802 NLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWE 863 (1212)
Q Consensus 802 ~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 863 (1212)
.|+.||+++|.+..+..+ ..-.|.++.|+++.|.+..+-. ++.+++|+.|++++
T Consensus 285 ~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSG 338 (490)
T ss_pred hhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh-------hhhcccceEeeccc
Confidence 344444444444444433 3444555555555444444321 22345555555554
No 39
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.13 E-value=8.8e-06 Score=77.23 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred eEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEecC
Q 000945 1117 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIG 1184 (1212)
Q Consensus 1117 ~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~ 1184 (1212)
-++++-|.|+|+.|...+++.|..++||++|++|.+++.|.|.+.+-|.++...|+..++.|-+.-.+
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G 74 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAG 74 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999988876543
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.13 E-value=2.4e-05 Score=91.15 Aligned_cols=114 Identities=22% Similarity=0.164 Sum_probs=82.1
Q ss_pred cccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 000945 148 YEAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIAD 223 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~ 223 (1212)
+..+.||+++++.|...+. ......+-|+|..|+||||+++.++++.......-..++|.+....+...+..+|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3457899999999988874 234456789999999999999999998763332234555655666678889999999
Q ss_pred HhcCc-c--cCCChhHHHHHHHHHHHcC-CcEE-EecCccccc
Q 000945 224 QLGLY-I--CEGSESERAMVLCGLLKKG-KKIL-VLDNIWTSL 261 (1212)
Q Consensus 224 ~l~~~-~--~~~~~~~~~~~l~~~L~~~-kr~L-VLDDVw~~~ 261 (1212)
++... . ...+..+....+.+.+... +.++ |+|+++...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 98652 1 1224456677777777642 4566 999998753
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.07 E-value=3e-05 Score=89.26 Aligned_cols=112 Identities=22% Similarity=0.230 Sum_probs=78.6
Q ss_pred ccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhc-CCC---CEEEEEEecCCCCHHHHHHH
Q 000945 149 EAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL-KLC---DEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F---~~~~wv~vs~~~~~~~l~~~ 220 (1212)
..+.||+++++.|...+. ......+-|+|+.|+||||+|+.++++.... ... -..+|+.+....+...+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 357899999999999886 2334578999999999999999999975411 111 13456666666677889999
Q ss_pred HHHHhc---Cccc--CCChhHHHHHHHHHHH-cCCcEE-EecCcccc
Q 000945 221 IADQLG---LYIC--EGSESERAMVLCGLLK-KGKKIL-VLDNIWTS 260 (1212)
Q Consensus 221 il~~l~---~~~~--~~~~~~~~~~l~~~L~-~~kr~L-VLDDVw~~ 260 (1212)
|++++. .... ..+..+....+.+.+. .++.++ |||+++..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999883 2221 1233445566666664 235677 99999876
No 42
>PTZ00202 tuzin; Provisional
Probab=98.04 E-value=0.00024 Score=78.01 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=72.5
Q ss_pred ccCCCcccccchHHHHHHHHHHhCC---CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHH
Q 000945 143 MCSEGYEAFESRKSILNDALDALSN---PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQG 219 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~~---~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~ 219 (1212)
..+.+..++.||+.+...+...|.+ +...++.|.|++|+|||||++.+..... ..+++..+. +...+.+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHH
Confidence 3455677899999999999888852 2345889999999999999999996543 223333333 7899999
Q ss_pred HHHHHhcCcccCCChhHHHHHHHHHHH----c-CCcEE-Eec
Q 000945 220 DIADQLGLYICEGSESERAMVLCGLLK----K-GKKIL-VLD 255 (1212)
Q Consensus 220 ~il~~l~~~~~~~~~~~~~~~l~~~L~----~-~kr~L-VLD 255 (1212)
.|+.+++.... ....++...|.+.+. . |++.+ |+-
T Consensus 328 ~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 328 SVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999997422 233445555555543 2 56666 654
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.03 E-value=5e-06 Score=81.85 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=29.4
Q ss_pred ccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCc-cccCCccEEeeccccCcccccchhhhccc
Q 000945 853 LTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSS-ASFKNLTTLELWYCQRLMNLVTSSTAKSL 931 (1212)
Q Consensus 853 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 931 (1212)
+.+|+.|++++|. ++.+ .++..++.|+.|++++| .+++++..+ ..+++|+.|++++ +++.++-.-..+..+
T Consensus 41 l~~L~~L~Ls~N~-I~~l-----~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l 112 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL-----EGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSL 112 (175)
T ss_dssp -TT--EEE-TTS---S-------TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-
T ss_pred hcCCCEEECCCCC-Cccc-----cCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcC
Confidence 4455555555542 3333 23445666666666653 344443322 2467777777776 456555444455667
Q ss_pred ccccEEEecCcc
Q 000945 932 VCLTKLRIDGCR 943 (1212)
Q Consensus 932 ~~L~~L~i~~c~ 943 (1212)
++|+.|++.++|
T Consensus 113 ~~L~~L~L~~NP 124 (175)
T PF14580_consen 113 PKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-G
T ss_pred CCcceeeccCCc
Confidence 778888887776
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.3e-07 Score=94.13 Aligned_cols=137 Identities=24% Similarity=0.194 Sum_probs=61.7
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-cc-ccCCccEEeeccccCcccc-cchhhhcc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SA-SFKNLTTLELWYCQRLMNL-VTSSTAKS 930 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~-~l~~L~~L~l~~c~~l~~l-~~~~~~~~ 930 (1212)
.+|+.|+|+.|.+++..... --+.++++|.+|++++|...+..... .. --+.|+.|+|++|..--.. -...+...
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQ--LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccceeeccccccccchhHHH--HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 44555555555544432110 12344556666666666544332110 01 1245666666665321110 01123345
Q ss_pred cccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCccccc-CCCceeecCCccEEEeccCC
Q 000945 931 LVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFC-SGNYTLKFPSLEDLFVIECP 1000 (1212)
Q Consensus 931 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~-~~~~~~~~~sL~~L~i~~C~ 1000 (1212)
+++|..|++++|..+..-.. .....|+.|++|.++.|-.+---- .... .-|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~--s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCF------QEFFKFNYLQHLSLSRCYDIIPETLLELN--SKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHH------HHHHhcchheeeehhhhcCCChHHeeeec--cCcceEEEEecccc
Confidence 56666666666654432111 112335666666666664221000 0001 12677777777763
No 45
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.99 E-value=2e-05 Score=75.49 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=67.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhc---CCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC-CChhHHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKL---KLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE-GSESERAMVLCGLL 245 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~---~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-~~~~~~~~~l~~~L 245 (1212)
-+++.|+|..|+||||+++.+.++.... ..-...+|+.+....+...+.+.|+..++..... .+..+..+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999875411 1134567888887779999999999999887655 56677788899999
Q ss_pred HcCCcEE-EecCcccc
Q 000945 246 KKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 246 ~~~kr~L-VLDDVw~~ 260 (1212)
.+.+..+ |+||+..-
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 8755656 99998764
No 46
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.98 E-value=5.7e-05 Score=82.82 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=62.1
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHH---
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCG--- 243 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~--- 243 (1212)
...-.++.|+|..|+||||+|+.+++...... + ..+|+ +....+...+++.|+..++..............+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999999865221 1 22343 334567888999999888776443333333334433
Q ss_pred -HHHcCCcEE-EecCccccc
Q 000945 244 -LLKKGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 244 -~L~~~kr~L-VLDDVw~~~ 261 (1212)
....+++++ |+||+|...
T Consensus 117 ~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHhCCCCeEEEEECcccCC
Confidence 333457777 999998764
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.95 E-value=5.2e-06 Score=81.73 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=16.1
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEcccee
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYK 838 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~ 838 (1212)
.+|+.|++++|.+..+. ....+++|+.|++++|.+..++.++...+++|+.|+++.|.+.
T Consensus 42 ~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred cCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 44555555555555442 2223455555555555555554332334555555555544443
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=5.1e-06 Score=66.71 Aligned_cols=59 Identities=32% Similarity=0.575 Sum_probs=51.8
Q ss_pred cceeeeccCCccccccH-HHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcc
Q 000945 266 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 325 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 325 (1212)
.|++|++++|.+..+|. .|..+.+|++|++++| .+..+|+++|..+.+|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47889999999999974 7889999999999988 89999988899999999999998864
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.88 E-value=1.4e-06 Score=96.43 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=88.2
Q ss_pred eEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCc
Q 000945 804 KNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITEN 883 (1212)
Q Consensus 804 ~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~ 883 (1212)
...|++.|....+|.. +..+..|+.|.+..|.+..+++. +.++..|..|+|+.+ .+..+ |..+..| -
T Consensus 78 ~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~------i~~L~~lt~l~ls~N-qlS~l----p~~lC~l-p 144 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEA------ICNLEALTFLDLSSN-QLSHL----PDGLCDL-P 144 (722)
T ss_pred hhhhccccccccCchH-HHHHHHHHHHHHHhccceecchh------hhhhhHHHHhhhccc-hhhcC----ChhhhcC-c
Confidence 3456666666666655 45566666666664444444422 223455555555442 12333 2222222 2
Q ss_pred ccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceecc
Q 000945 884 LESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFS 963 (1212)
Q Consensus 884 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~ 963 (1212)
|+.|-+++ ++++++|..++.++.|..|+.+.| ++.++| +-++.+.+|+.|.++.+.
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrRn~-------------------- 200 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRRNH-------------------- 200 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhhhh--------------------
Confidence 55555554 455556655555555666665553 455544 333444445544444433
Q ss_pred chhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCCcCCCccceEEeccCcc
Q 000945 964 KLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 964 ~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~~~~~~~ 1025 (1212)
+..+|...+.+ .|..||++ |.++..+|-.+..+..|++|-+.+|..
T Consensus 201 ------------l~~lp~El~~L---pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 201 ------------LEDLPEELCSL---PLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ------------hhhCCHHHhCC---ceeeeecc-cCceeecchhhhhhhhheeeeeccCCC
Confidence 44444443332 36666663 667777777777777777777766543
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=1.6e-05 Score=63.84 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=29.2
Q ss_pred cceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCC
Q 000945 802 NLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWEL 864 (1212)
Q Consensus 802 ~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 864 (1212)
+|++|++++|.+..+|...|..+++|+.|++++|.++.+++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-----~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-----DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-----TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-----HHHcCCCCCCEEeCcCC
Confidence 34444455555555555455555555555555555554443 12333555555555554
No 51
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=9.8e-05 Score=82.86 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=58.4
Q ss_pred ccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHH
Q 000945 149 EAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
..+++.+...+.++..|.. -+.|-++|++|+||||+|+.+.+.......|+.+.||++++.++..++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence 3466778889999998874 356778999999999999999998766678999999999999987776654
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.75 E-value=1.8e-06 Score=95.76 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=61.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+..|++|+|+.|+++.++.. . .+--|+.|-+++|.++.+|.. ++.++.|..|+.+||.+..+++ .++.+
T Consensus 120 L~~lt~l~ls~NqlS~lp~~---l-C~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~slps------ql~~l 188 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDG---L-CDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQSLPS------QLGYL 188 (722)
T ss_pred hhHHHHhhhccchhhcCChh---h-hcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhhhhhchH------HhhhH
Confidence 34455555555555544321 1 112355555555555555554 3455555555555555544432 12224
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMN 921 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 921 (1212)
.+|+.|.+..+. +..+ |..+. --.|..||++ |+++..||.++..+..|++|.|.++ -|++
T Consensus 189 ~slr~l~vrRn~-l~~l----p~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenN-PLqS 248 (722)
T KOG0532|consen 189 TSLRDLNVRRNH-LEDL----PEELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENN-PLQS 248 (722)
T ss_pred HHHHHHHHhhhh-hhhC----CHHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccC-CCCC
Confidence 555555554422 2333 22222 1235555555 4555556665556666666666553 3444
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.72 E-value=1.6e-05 Score=80.93 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=90.5
Q ss_pred cCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCcc
Q 000945 824 FHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSA 903 (1212)
Q Consensus 824 l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 903 (1212)
...|+.||++.|.++.+- +.+...|.++.|+++++. +..+ ..+..+++|+.|+++++ .++++.-+-.
T Consensus 283 Wq~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~-i~~v-----~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID------ESVKLAPKLRRLILSQNR-IRTV-----QNLAELPQLQLLDLSGN-LLAECVGWHL 349 (490)
T ss_pred Hhhhhhccccccchhhhh------hhhhhccceeEEeccccc-eeee-----hhhhhcccceEeecccc-hhHhhhhhHh
Confidence 457899999988887653 344558999999999854 3332 44778899999999984 4555544445
Q ss_pred ccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCC
Q 000945 904 SFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 904 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
.+-+.++|.+++ +.++++ +.++.+-+|..|+++++. ++.+-.- ..++.+|.|+++.+.+.|
T Consensus 350 KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV-----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSSNQ-IEELDEV-----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccccc-hhhHHHh-----cccccccHHHHHhhcCCC
Confidence 678889999998 577777 667888889999998875 4443210 235556777777776665
No 54
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.69 E-value=0.00022 Score=70.02 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC
Q 000945 153 SRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP 212 (1212)
Q Consensus 153 gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~ 212 (1212)
|++..++.+...+.......+-|+|..|+||||+|+.+++... ..-...+++..++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 6788888888888765677899999999999999999999875 222345566555443
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3.9e-06 Score=85.42 Aligned_cols=62 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred cccceeecccc--ccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEecccc
Q 000945 618 PNLETLELCAI--STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 681 (1212)
Q Consensus 618 ~~L~~L~l~~~--~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 681 (1212)
++|..|+|+|| ++.......+. ..+|+|.+|+|++|..++. .-...+.+++.|++|.++.|-
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc
Confidence 55666666666 33322221111 2467777777777766654 122224556666666666665
No 56
>PF05729 NACHT: NACHT domain
Probab=97.55 E-value=0.00021 Score=71.70 Aligned_cols=87 Identities=25% Similarity=0.284 Sum_probs=54.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCC----CCEEEEEEecCCCCHH---HHHHHHHHHhcCcccCCChhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKL----CDEVVFVEVSQTPDVK---RIQGDIADQLGLYICEGSESERAMVLCG 243 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~----F~~~~wv~vs~~~~~~---~l~~~il~~l~~~~~~~~~~~~~~~l~~ 243 (1212)
+++-|.|.+|+||||+++.+..+...... |...+|+.....-+.. .+...|......... .....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-----PIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-----hhHHHHHH
Confidence 47899999999999999999988764443 4566676665433322 344444444322111 11113344
Q ss_pred HHHcCCcEE-EecCcccccc
Q 000945 244 LLKKGKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 244 ~L~~~kr~L-VLDDVw~~~~ 262 (1212)
.+...++++ |+|++++...
T Consensus 76 ~~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEE 95 (166)
T ss_pred HHHcCCceEEEEechHhccc
Confidence 444568999 9999987643
No 57
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=6.4e-05 Score=74.64 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=29.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhc-CCCCEEEE
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKL-KLCDEVVF 205 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F~~~~w 205 (1212)
..|.|+|++|.||||||+.+++...+. -+||...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987654 56777775
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.47 E-value=5e-05 Score=88.51 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=29.1
Q ss_pred cceeeeeccccccccccccCccccc-ccceEeEeecCCccccchHHHhhcCccceeEEEccceeEec
Q 000945 776 KLEELKLSGKDIAMICQSQFPKHIF-RNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIF 841 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~ 841 (1212)
.++.|++.++.+..+.+ ....+ .+|+.|++++|.+..+|.. +..+++|+.|+++.|.+.+++
T Consensus 117 ~l~~L~l~~n~i~~i~~---~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~ 179 (394)
T COG4886 117 NLTSLDLDNNNITDIPP---LIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLP 179 (394)
T ss_pred ceeEEecCCcccccCcc---ccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhh
Confidence 45555555555555432 11122 1455555555555555422 445555555555544444443
No 59
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.40 E-value=0.00016 Score=77.46 Aligned_cols=45 Identities=31% Similarity=0.316 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++||+++.+.|.+++..+....+.|+|..|+|||||++.+.+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 479999999999998876678999999999999999999999774
No 60
>PLN02957 copper, zinc superoxide dismutase
Probab=97.32 E-value=0.001 Score=69.99 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=64.7
Q ss_pred ceEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEecCCCC
Q 000945 1116 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPAN 1187 (1212)
Q Consensus 1116 ~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~~ 1187 (1212)
-+++.+.|.|.|+.|+.++.+.+.+++||.++.+|...++++|.+.+++..++.++++.++.++++...+++
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE 76 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 367789999999999999999999999999999999999999999889999999999999888888665543
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=1.5e-05 Score=96.38 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=7.4
Q ss_pred CCCccEEEEecCCC
Q 000945 727 WPMLKKLEVYGCDK 740 (1212)
Q Consensus 727 ~~~L~~L~i~~C~~ 740 (1212)
+++|+.|.+.+|+.
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 45555555555544
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.28 E-value=0.00022 Score=83.07 Aligned_cols=154 Identities=26% Similarity=0.303 Sum_probs=120.0
Q ss_pred cceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccc
Q 000945 776 KLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQ 855 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~ 855 (1212)
+|+.|++++|.+..+. .+...+++|+.|++++|.+..+|.. ...+++|+.|+++.|.+..+++..+ .+..
T Consensus 141 nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~------~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIE------LLSA 210 (394)
T ss_pred hcccccccccchhhhh---hhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhhh------hhhh
Confidence 8999999999998874 3456789999999999999999875 4478999999999999998876421 2667
Q ss_pred cceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccccc
Q 000945 856 VKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLT 935 (1212)
Q Consensus 856 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 935 (1212)
|++|.+.+.+.+.. +..+..+.++..|.+.+ ..+..++.....+++|+.|+++++ .+.+++. ...+.+|+
T Consensus 211 L~~l~~~~N~~~~~-----~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~ 280 (394)
T COG4886 211 LEELDLSNNSIIEL-----LSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLR 280 (394)
T ss_pred hhhhhhcCCcceec-----chhhhhcccccccccCC-ceeeeccchhccccccceeccccc-ccccccc---ccccCccC
Confidence 99999998653332 45567788888888554 445555666788899999999984 7888753 67888999
Q ss_pred EEEecCcchhhHhh
Q 000945 936 KLRIDGCRMLTEII 949 (1212)
Q Consensus 936 ~L~i~~c~~l~~~~ 949 (1212)
.|++++......++
T Consensus 281 ~L~~s~n~~~~~~~ 294 (394)
T COG4886 281 ELDLSGNSLSNALP 294 (394)
T ss_pred EEeccCccccccch
Confidence 99999887554444
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0027 Score=71.25 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=84.4
Q ss_pred ccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhc-CCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 000945 151 FESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL-KLCDEVVFVEVSQTPDVKRIQGDIADQL 225 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F~~~~wv~vs~~~~~~~l~~~il~~l 225 (1212)
+.+|+++++++...|. ...-.-+-|+|..|.|||+.++.|....+.. ...+ .+.|.+-.......+..+|+.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHc
Confidence 7899999999988775 2223338899999999999999999986532 1222 67777778888999999999999
Q ss_pred cCcc-cCCChhHHHHHHHHHHHc-CCcEE-EecCcccccc
Q 000945 226 GLYI-CEGSESERAMVLCGLLKK-GKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 226 ~~~~-~~~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~~~ 262 (1212)
+... .+....+....+.+.+.. ++.++ |||++.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 6433 345666777888888875 46667 9999987643
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.21 E-value=0.018 Score=69.98 Aligned_cols=63 Identities=32% Similarity=0.463 Sum_probs=48.1
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCC---EEEEEEec
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCD---EVVFVEVS 209 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~---~~~wv~vs 209 (1212)
....++|++..+..+.+.+.......+.|+|..|+||||+|+.+++.......+. ..-|+.+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 3445789998888888887766667899999999999999999999875444442 23566553
No 65
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.21 E-value=0.00081 Score=68.91 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHhhhc
Q 000945 151 FESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL 197 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~ 197 (1212)
++||+++.+.+...+. ....+.+-|+|..|+|||||++.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999992 4567899999999999999999999988755
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.21 E-value=0.00093 Score=77.53 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=38.3
Q ss_pred CcccccchHHHHHH---HHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILND---ALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~---l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|++..+.. +.+++.......+-++|.+|+||||+|+.+.+...
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34457787766544 66677666777888999999999999999998654
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.15 E-value=0.00027 Score=51.59 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=25.5
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccch
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPP 306 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~ 306 (1212)
.|++|++++|.|..+|..+++|.+|++|++++| .+..++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 366777777777777666777777777777777 5655543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=4.4e-05 Score=92.16 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=73.5
Q ss_pred ccccceeecccc-ccceecccCcccccCcCccEEEEecC-CCccccC--chhhhhccCCCcEEEeccccccceeeccccc
Q 000945 617 FPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVHGC-EKLKYLF--PSSMIRNFVQLEHLEICYCSSLESIVGKESG 692 (1212)
Q Consensus 617 ~~~L~~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~L~~c-~~l~~l~--~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 692 (1212)
.++|+.|.+.++ .+...+...+. ...++|+.|++++| ......+ .......+++|+.|++++|..+........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH-
Confidence 477888888887 55443321111 35788888888873 3322221 122345678888899988886555432111
Q ss_pred ccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcc
Q 000945 693 EEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVK 742 (1212)
Q Consensus 693 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 742 (1212)
...+++|+.|.+.+|+.+..-........+++|++|++++|..+.
T Consensus 265 -----~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 265 -----ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred -----HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 112688999988888875443322223367889999999998764
No 69
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.05 E-value=0.0047 Score=73.98 Aligned_cols=112 Identities=16% Similarity=0.073 Sum_probs=74.3
Q ss_pred ccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhhh---cCCCCE--EEEEEecCCCCHHHHH
Q 000945 149 EAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK---LKLCDE--VVFVEVSQTPDVKRIQ 218 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v---~~~F~~--~~wv~vs~~~~~~~l~ 218 (1212)
..+.||+++++.|...|. .....++-|+|+.|.|||+.++.|.+.... +..... .++|.+..-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 457899999999988776 223467889999999999999999887532 122222 3455555556777888
Q ss_pred HHHHHHhcCcccC--CChhHHHHHHHHHHHc-CC-cEE-EecCcccc
Q 000945 219 GDIADQLGLYICE--GSESERAMVLCGLLKK-GK-KIL-VLDNIWTS 260 (1212)
Q Consensus 219 ~~il~~l~~~~~~--~~~~~~~~~l~~~L~~-~k-r~L-VLDDVw~~ 260 (1212)
..|..++...... ....+....+...+.. .+ ..+ |||+|...
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 8888888443221 2333455556665532 12 335 99999855
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00029 Score=72.20 Aligned_cols=217 Identities=20% Similarity=0.164 Sum_probs=121.1
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccc--hHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFR--IGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
++-|.+.++.+...-.........+.++.||+.+|.+.... ..++.++|.|+.|+|+||.|.+...... ..+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-----~p~~ 121 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-----LPLK 121 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-----cccc
Confidence 33444444444443322222234567788888888777654 2457889999999999999875432210 0156
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcc-ccc-CCccc-cCCccEEeeccccCcccccchhhhccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLI-NLV-PSSAS-FKNLTTLELWYCQRLMNLVTSSTAKSL 931 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp-~~~~~-l~~L~~L~l~~c~~l~~l~~~~~~~~l 931 (1212)
+|+.|-+.+.. |. |...-..+..+|.+++|.++.++--. .+. .+... -+.+++|+...|......-...+-.-.
T Consensus 122 nl~~lVLNgT~-L~--w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 122 NLRVLVLNGTG-LS--WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred ceEEEEEcCCC-CC--hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 88888887631 11 11112345677788888888752110 010 01111 246777777777544333222333455
Q ss_pred ccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcC
Q 000945 932 VCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHR 1008 (1212)
Q Consensus 932 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~ 1008 (1212)
+++..+.+..|| +...... .....+|.+..|.+... ++.+...-..--.||+|..|.+.+.|....+-.+
T Consensus 199 pnv~sv~v~e~P-lK~~s~e-----k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 199 PNVNSVFVCEGP-LKTESSE-----KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred ccchheeeecCc-ccchhhc-----ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 678888888887 4443321 12233566666666553 2333322111124688999999888877766543
No 71
>PLN03150 hypothetical protein; Provisional
Probab=96.94 E-value=0.001 Score=81.29 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=18.9
Q ss_pred ccccCcccEEEEecCCCcccccCCccccCCccEEeeccc
Q 000945 878 DSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 916 (1212)
++.+++|+.|++++|...+.+|..++.+++|+.|++++|
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 344444455555544444444444445555555555544
No 72
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.89 E-value=0.002 Score=82.12 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=60.2
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEe
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
|+++++++|+ |+|++|++++.+++.+++||..+.+|.+ +.+|.+.+++..+.+.+++.|+.+++..
T Consensus 1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 5688999998 9999999999999999999999999984 6777888999999999999999888864
No 73
>PF13173 AAA_14: AAA domain
Probab=96.88 E-value=0.0017 Score=61.47 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=50.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
-+++.|.|+-|+|||||++.++.+.. .....+++...+........ .+....+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhccCC
Confidence 46899999999999999999998654 22444555433221110000 002233334433346
Q ss_pred cEEEecCccccccccccceee
Q 000945 250 KILVLDNIWTSLDLDKKLEIL 270 (1212)
Q Consensus 250 r~LVLDDVw~~~~~~~~Lr~L 270 (1212)
+++++|+|-...+|...++.+
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l 83 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFL 83 (128)
T ss_pred cEEEEehhhhhccHHHHHHHH
Confidence 666999999888887755544
No 74
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.85 E-value=0.0075 Score=64.80 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=61.4
Q ss_pred ccccchHHHHHHHHHHhCCCCc---eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 000945 149 EAFESRKSILNDALDALSNPNV---NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQL 225 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~~~~~---~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l 225 (1212)
..+.+|+.++..+..++.+.+. +.|-|+|-.|.|||.++|.+++... ...+|+++-+.|..+.+..+|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 3567899999999998885432 3347899999999999999999874 2358999999999999999999988
Q ss_pred c
Q 000945 226 G 226 (1212)
Q Consensus 226 ~ 226 (1212)
+
T Consensus 81 ~ 81 (438)
T KOG2543|consen 81 Q 81 (438)
T ss_pred c
Confidence 5
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0043 Score=67.29 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=49.4
Q ss_pred HHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhcCcccCCChhHHHHH
Q 000945 162 LDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP-DVKRIQGDIADQLGLYICEGSESERAMV 240 (1212)
Q Consensus 162 ~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~ 240 (1212)
-+++..+.+.-.-.||++|+||||||+.|-.... .. |..+|-.+ +++++ ++|++..
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdl-r~i~e~a--------------- 96 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDL-REIIEEA--------------- 96 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHH-HHHHHHH---------------
Confidence 3444466777778999999999999999998655 33 44555544 34443 3444322
Q ss_pred HHHHHHcCCcEE-EecCccccc
Q 000945 241 LCGLLKKGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 241 l~~~L~~~kr~L-VLDDVw~~~ 261 (1212)
++....|+|.+ .+|.|..-.
T Consensus 97 -~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 97 -RKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred -HHHHhcCCceEEEEehhhhcC
Confidence 22333368888 999987553
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.81 E-value=0.00045 Score=72.89 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=92.9
Q ss_pred cccceeeeeccccccccccc--cCcccccccceEeEeecCCccccchHHHh-------------hcCccceeEEEcccee
Q 000945 774 TSKLEELKLSGKDIAMICQS--QFPKHIFRNLKNLEVVNDESENFRIGFLE-------------RFHNLEKLELRWSSYK 838 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~~p~~~l~-------------~l~~L~~L~l~c~~l~ 838 (1212)
.|.|++|+||.|.+..-... ..-+.++++|++|.+.++.++......++ .-+.|+.+..+.|.+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 45788888887766432211 11123467788888888777766554432 2466777777766665
Q ss_pred EeccccchhhccccccccceEeeCCCccchhhhccC----CCCccccCcccEEEEecCCCcc----cccCCccccCCccE
Q 000945 839 EIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQD----SKLDSITENLESLEVWWCENLI----NLVPSSASFKNLTT 910 (1212)
Q Consensus 839 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~ 910 (1212)
.-. ...+...++..+.|+.+.+..+. |...+ ...+.++++|+.|++.+|..-. .+...+..+++|+.
T Consensus 171 n~g-a~~~A~~~~~~~~leevr~~qN~----I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 171 NGG-ATALAEAFQSHPTLEEVRLSQNG----IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccc-HHHHHHHHHhccccceEEEeccc----ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 422 11222344556778887776642 11111 2345677888888888765432 12223345677788
Q ss_pred EeeccccCcccccch----hhhcccccccEEEecCcc
Q 000945 911 LELWYCQRLMNLVTS----STAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 911 L~l~~c~~l~~l~~~----~~~~~l~~L~~L~i~~c~ 943 (1212)
|++++| .++.-... .+-...++|+.|.+.+|.
T Consensus 246 l~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 246 LNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred eccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 888887 34332211 223345677777777765
No 77
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.80 E-value=0.00018 Score=87.25 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=74.3
Q ss_pred cccceeeeecccccc-ccccccCcccccccceEeEeecCCccccc-hHHHhhcCccceeEEEccceeEeccccchhhccc
Q 000945 774 TSKLEELKLSGKDIA-MICQSQFPKHIFRNLKNLEVVNDESENFR-IGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAE 851 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~-~l~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~ 851 (1212)
-.+|++|+|+|...- .-|+. .....+|+|++|.+.+-.+..-. .....++|+|..||||..+++.+. ++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-------GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-------GIS 192 (699)
T ss_pred HHhhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-------HHh
Confidence 357888888764322 11111 11134788888888883322211 233567888888888855555442 233
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc--c----cCCccccCCccEEeecc
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN--L----VPSSASFKNLTTLELWY 915 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--l----p~~~~~l~~L~~L~l~~ 915 (1212)
.+.+|+.|.+.+.+--.. .....+.+|++|+.||||.-..... + -.+...+|.|+.||.++
T Consensus 193 ~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 477777777776432111 1123456788888888886433221 1 12224477777777776
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=96.79 E-value=0.0018 Score=68.28 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=29.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
....+.|||..|+|||+||+++.+.... ....+.|+.++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~--~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLL--NQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEeeHH
Confidence 3457899999999999999999998653 23445676653
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.75 E-value=0.00058 Score=78.46 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=67.1
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
+++.|||++|++.... .+..|.+|++|||++| .+..+|.--...+. |+.|.+++|.+. .+..+.
T Consensus 188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~-------------tL~gie 251 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT-------------TLRGIE 251 (1096)
T ss_pred HhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH-------------hhhhHH
Confidence 7888889988887776 7888888999999998 78888863344444 888888888775 577778
Q ss_pred cCCCCCcceeeecccccCCCC
Q 000945 346 LLSHLTTLEIQICDAMILPKG 366 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~~ 366 (1212)
+|.+|++|++++|-+..+.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL 272 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSEL 272 (1096)
T ss_pred hhhhhhccchhHhhhhcchhh
Confidence 888899999999987766554
No 80
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.72 E-value=0.0035 Score=66.55 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 153 SRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 153 gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
+....++.+-+++....-..|-|+|..|+||||||+.+++... ......+++.++
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~ 75 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLA 75 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHH
Confidence 3455666777766555567889999999999999999999765 334444555444
No 81
>PLN03150 hypothetical protein; Provisional
Probab=96.68 E-value=0.0018 Score=79.19 Aligned_cols=88 Identities=19% Similarity=0.133 Sum_probs=53.5
Q ss_pred cceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccccc
Q 000945 856 VKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLT 935 (1212)
Q Consensus 856 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 935 (1212)
++.|+|+++. +....|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.--..+| ..+..+++|+
T Consensus 420 v~~L~L~~n~----L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP--~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG----LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP--ESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCC----ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc--hHHhcCCCCC
Confidence 5556666543 222224556667777777777766666677666777777777777753222444 4456677777
Q ss_pred EEEecCcchhhHhh
Q 000945 936 KLRIDGCRMLTEII 949 (1212)
Q Consensus 936 ~L~i~~c~~l~~~~ 949 (1212)
.|++++|.....+|
T Consensus 494 ~L~Ls~N~l~g~iP 507 (623)
T PLN03150 494 ILNLNGNSLSGRVP 507 (623)
T ss_pred EEECcCCcccccCC
Confidence 77777776444554
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.56 E-value=9.9e-05 Score=84.51 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred ccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCc
Q 000945 799 IFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLD 878 (1212)
Q Consensus 799 ~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 878 (1212)
-++.|+.|+|++|.+.... .+..++.|+.|||+.|.|..++..... -..|+.|.|+++. ++.+ .++
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~------gc~L~~L~lrnN~-l~tL-----~gi 250 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMV------GCKLQLLNLRNNA-LTTL-----RGI 250 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchh------hhhheeeeecccH-HHhh-----hhH
Confidence 4567777777777776654 467777777777777777666543321 1237777776632 4443 455
Q ss_pred cccCcccEEEEecCCCcc--cccCCccccCCccEEeeccc
Q 000945 879 SITENLESLEVWWCENLI--NLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 916 (1212)
.+|.+|+.||+++|-..+ .+- .+..+..|+.|.+.++
T Consensus 251 e~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCC
Confidence 666777777777642221 111 1234556666666664
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.54 E-value=0.0045 Score=75.75 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=38.1
Q ss_pred CCcccccchHHHHH---HHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILN---DALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~---~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|++..+. .+.+++..+....+-+||++|+||||||+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556778877663 455566666777788999999999999999998754
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.54 E-value=0.00046 Score=72.79 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=39.5
Q ss_pred ccCCCcEEEeecCCCceeeecCcchh-ccccccccceeecccccccceeecc---cCCccccCCccEEEEecCCCCCcc-
Q 000945 436 GFLQLKHLHVQNNPFILFIVDSMAWV-RYNAFLLLESLVLHNLIHLEKICLG---QLRAESFYKLKIIKVRNCDKLKNI- 510 (1212)
Q Consensus 436 ~l~~L~~L~l~~~~~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~~l~~i~~~---~~~~~~l~~L~~L~L~~c~~l~~l- 510 (1212)
.+++|+.|+|.+|..... .+.... ..+.+++|+.|++++| .++.-... ...-...|+|++|.+.+| .++.-
T Consensus 211 ~~~~LevLdl~DNtft~e--gs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da 286 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLE--GSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDA 286 (382)
T ss_pred hCCcceeeecccchhhhH--HHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHH
Confidence 567777777777632111 000000 1344556666666665 22210000 000123556666666664 22221
Q ss_pred --CchhhhccCCCccEEEEccCc
Q 000945 511 --FSFSFVRGLPQLQTLNVINCK 531 (1212)
Q Consensus 511 --~~~~~~~~L~~L~~L~l~~c~ 531 (1212)
-....+...+.|+.|++++|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 000123335566666666554
No 85
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.52 E-value=0.0049 Score=65.26 Aligned_cols=55 Identities=35% Similarity=0.381 Sum_probs=38.9
Q ss_pred CCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 000945 166 SNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQ 224 (1212)
Q Consensus 166 ~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~ 224 (1212)
..+.+..+-.||..|+||||||+.|-+..+-.. .-||..|-.-.-..=.++|+++
T Consensus 158 eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 158 EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 356788888999999999999999999876333 4567776554333334455543
No 86
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.50 E-value=0.0025 Score=46.60 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=23.6
Q ss_pred cceEeEeecCCccccchHHHhhcCccceeEEEccceeEec
Q 000945 802 NLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIF 841 (1212)
Q Consensus 802 ~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~ 841 (1212)
+|++|++++|.+..+|+. +.++++|+.|+++.|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666654 667777777777755565543
No 87
>PRK07261 topology modulation protein; Provisional
Probab=96.47 E-value=0.0091 Score=59.68 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=25.0
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhc-CCCCEEEE
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKL-KLCDEVVF 205 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F~~~~w 205 (1212)
.|.|+|++|.||||||+.+.....+. -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999997764321 23454444
No 88
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.22 Score=55.77 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=49.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH--HHHHHHHHHHhcCcccCC-ChhHHHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV--KRIQGDIADQLGLYICEG-SESERAMVLCGLLK 246 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~--~~l~~~il~~l~~~~~~~-~~~~~~~~l~~~L~ 246 (1212)
-.++.++|..|+||||++.++-.....+.....+++++ .+.|.+ ..-++...+.++...... +..+. .....++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l-~~~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL-QLALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccH-HHHHHHhc
Confidence 46899999999999999999988754222123444444 444532 233333344444443222 22222 33445566
Q ss_pred cCCcEEEecCccc
Q 000945 247 KGKKILVLDNIWT 259 (1212)
Q Consensus 247 ~~kr~LVLDDVw~ 259 (1212)
+ +.++++|..-.
T Consensus 215 ~-~DlVLIDTaG~ 226 (374)
T PRK14722 215 N-KHMVLIDTIGM 226 (374)
T ss_pred C-CCEEEEcCCCC
Confidence 4 77778887643
No 89
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.088 Score=60.86 Aligned_cols=88 Identities=25% Similarity=0.271 Sum_probs=46.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHH--HHHHHHHHhcCcccCCChhHHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKR--IQGDIADQLGLYICEGSESERAMVLCGLLK 246 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~--l~~~il~~l~~~~~~~~~~~~~~~l~~~L~ 246 (1212)
.-.+|+|+|.+|+||||++..+......+.....+..++. +.|..-. -++.....++..............+.+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt-DtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT-DTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec-ccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3579999999999999999998876542222233444433 3344321 111112222222222222222333444555
Q ss_pred cCCcEEEecCcc
Q 000945 247 KGKKILVLDNIW 258 (1212)
Q Consensus 247 ~~kr~LVLDDVw 258 (1212)
+ +.++++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 6666888764
No 90
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.36 E-value=0.00079 Score=78.53 Aligned_cols=176 Identities=20% Similarity=0.147 Sum_probs=100.3
Q ss_pred cccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccc
Q 000945 614 KVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGE 693 (1212)
Q Consensus 614 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~ 693 (1212)
+..+.+|+.|++.+|.+..+-... .++++|++|+|++ +.++.+.+ +..++.|+.|++++|. +..+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l---~~~~~L~~L~ls~-N~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~----- 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLL---SSLVNLQVLDLSF-NKITKLEG---LSTLTLLKELNLSGNL-ISDISG----- 157 (414)
T ss_pred cccccceeeeeccccchhhcccch---hhhhcchheeccc-cccccccc---hhhccchhhheeccCc-chhccC-----
Confidence 456788889999888776654411 2688899999988 57777766 6778889999998887 655532
Q ss_pred cccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeee
Q 000945 694 EATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 773 (1212)
Q Consensus 694 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1212)
...+++|+.+++.++..-.. .... ...+.+|+.+.+.+... ..+. .+ ..
T Consensus 158 ----~~~l~~L~~l~l~~n~i~~i-e~~~-~~~~~~l~~l~l~~n~i-~~i~----~~--------------------~~ 206 (414)
T KOG0531|consen 158 ----LESLKSLKLLDLSYNRIVDI-ENDE-LSELISLEELDLGGNSI-REIE----GL--------------------DL 206 (414)
T ss_pred ----CccchhhhcccCCcchhhhh-hhhh-hhhccchHHHhccCCch-hccc----ch--------------------HH
Confidence 12266777777766532111 1100 12456666666666422 1110 00 00
Q ss_pred cccceeeeeccccccccccccCcccccc--cceEeEeecCCccccchHHHhhcCccceeEEEcccee
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFR--NLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYK 838 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~ 838 (1212)
+..+..+++..|.+..+.. ...+. .|+.+++++|.+...+. .+..+..+..|++..+.+.
T Consensus 207 ~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~~n~i~~~~~-~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLSGNRISRSPE-GLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHHHhhcccccceeccC----cccchhHHHHHHhcccCccccccc-cccccccccccchhhcccc
Confidence 2233333555555555532 11122 26777777776666542 2555666777776644443
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.33 E-value=0.017 Score=64.49 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++|+++.++.+..++. ......+-++|+.|+||||||+.+.+...
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568899999998888775 23455678999999999999999998765
No 92
>PRK04195 replication factor C large subunit; Provisional
Probab=96.33 E-value=0.0092 Score=70.83 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=42.0
Q ss_pred CCCcccccchHHHHHHHHHHhCC----CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSN----PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~----~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|+++.++.+.+|+.. ...+.+-|+|..|+||||+|+++.++..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44566789999999999988862 1267889999999999999999999763
No 93
>PRK08116 hypothetical protein; Validated
Probab=96.31 E-value=0.015 Score=62.76 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=47.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCCc
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGKK 250 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~kr 250 (1212)
.-+-+||..|+|||.||.+|++...- +--.++++. ...+...|........ ......+.+.+.+ -.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~-~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN-AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC-CC
Confidence 35789999999999999999998763 333445554 3445555554443211 1122334556664 56
Q ss_pred EEEecCccc
Q 000945 251 ILVLDNIWT 259 (1212)
Q Consensus 251 ~LVLDDVw~ 259 (1212)
+|||||+-.
T Consensus 181 lLviDDlg~ 189 (268)
T PRK08116 181 LLILDDLGA 189 (268)
T ss_pred EEEEecccC
Confidence 779999953
No 94
>PLN03025 replication factor C subunit; Provisional
Probab=96.31 E-value=0.018 Score=64.34 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.....++|.++.++.+..++..+...-+-++|..|+||||+|+.+-+..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34456678888888888877776666667799999999999999998875
No 95
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.25 E-value=0.0055 Score=61.95 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=33.8
Q ss_pred CCCcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+.-++.+--++. .+.+.-+-.||++|+||||||+.|-+...
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 3456677888776665432222 34577788999999999999999999876
No 96
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0057 Score=59.71 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=55.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
..+...++++.|++..+. .+..++.|.+|.+.+|.+..+.+..-..+++|+.|.+..|++..+-..+. +..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p----La~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP----LASC 112 (233)
T ss_pred ccccceecccccchhhcc----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch----hccC
Confidence 456667778777776663 23457788888888888888887777777888888888777655433221 1225
Q ss_pred cccceEeeCCCc
Q 000945 854 TQVKSLKLWELS 865 (1212)
Q Consensus 854 ~~L~~L~l~~c~ 865 (1212)
+.|++|.+-+++
T Consensus 113 p~L~~Ltll~Np 124 (233)
T KOG1644|consen 113 PKLEYLTLLGNP 124 (233)
T ss_pred CccceeeecCCc
Confidence 666666665543
No 97
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.23 E-value=0.0014 Score=79.64 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=8.6
Q ss_pred cCCCcEEEecccc
Q 000945 669 FVQLEHLEICYCS 681 (1212)
Q Consensus 669 l~~L~~L~l~~~~ 681 (1212)
-.+|++|+|+|..
T Consensus 121 r~nL~~LdI~G~~ 133 (699)
T KOG3665|consen 121 RQNLQHLDISGSE 133 (699)
T ss_pred HHhhhhcCccccc
Confidence 3577777777644
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.20 E-value=0.015 Score=56.45 Aligned_cols=89 Identities=28% Similarity=0.246 Sum_probs=49.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC-
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK- 249 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k- 249 (1212)
..+.|+|..|+||||+|+.+...... .....+++..+........... ...................+..+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999886652 2223455544433332222221 1111111122233334445566665423
Q ss_pred cEEEecCcccccc
Q 000945 250 KILVLDNIWTSLD 262 (1212)
Q Consensus 250 r~LVLDDVw~~~~ 262 (1212)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 3449999987754
No 99
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.16 E-value=0.0046 Score=58.01 Aligned_cols=23 Identities=43% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
||.|.|+.|+||||+|+.+-+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999998865
No 100
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.14 E-value=0.025 Score=58.78 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV 208 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v 208 (1212)
-.+.|+|..|.|||||+..+..... +.|++..+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3678999999999999999998766 88977766644
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.11 E-value=0.02 Score=65.19 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|++..++.+..++..+....+-++|..|+||||+|+++.+...
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456789999999999988876666788999999999999999988654
No 102
>PRK12377 putative replication protein; Provisional
Probab=96.08 E-value=0.019 Score=60.66 Aligned_cols=76 Identities=21% Similarity=0.183 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
....+.|+|..|+|||+||.+|.+... ...-.++++++. .+...|-...... . ....+.+.+.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l~~- 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQELCK- 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHhcC-
Confidence 346789999999999999999999876 334445666554 3444443333111 1 11235556664
Q ss_pred CcEEEecCcccc
Q 000945 249 KKILVLDNIWTS 260 (1212)
Q Consensus 249 kr~LVLDDVw~~ 260 (1212)
-.+|||||+-..
T Consensus 164 ~dLLiIDDlg~~ 175 (248)
T PRK12377 164 VDLLVLDEIGIQ 175 (248)
T ss_pred CCEEEEcCCCCC
Confidence 667799999544
No 103
>PRK08727 hypothetical protein; Validated
Probab=96.08 E-value=0.024 Score=60.02 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.9
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV 208 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v 208 (1212)
......|.|+|..|+|||+||+++.+... ++.....|+.+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~ 77 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPL 77 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeH
Confidence 33445699999999999999999999765 33345566653
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.05 E-value=0.024 Score=60.14 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 155 KSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 155 ~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
...+..+-.+........+-|||..|+|||+||+++.+... ..-..+.++.+.
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~ 82 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLD 82 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHH
Confidence 33444444444444556889999999999999999999765 223345566554
No 105
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.04 E-value=0.044 Score=60.60 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE-EEEEEecCC-CCHHHHHHHHHHHhcCcccCCChh
Q 000945 159 NDALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE-VVFVEVSQT-PDVKRIQGDIADQLGLYICEGSES 235 (1212)
Q Consensus 159 ~~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~-~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~ 235 (1212)
..+++.+.- ..-..+.|+|..|+|||||++.+.+.... .+=+. ++|+.|.+. -.+..+++.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 347777662 33456799999999999999999987652 23345 477777655 467888888887665432111111
Q ss_pred -------HHHHHHHHHHHcCCcEE-EecCcccc
Q 000945 236 -------ERAMVLCGLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 236 -------~~~~~l~~~L~~~kr~L-VLDDVw~~ 260 (1212)
.........-..|++++ |+|++-.-
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11222233334579999 99998654
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.02 E-value=0.024 Score=70.94 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=41.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++||+++++.+++.|......-+-+||..|+||||+|+.+.....
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999998755555567999999999999999998763
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.02 E-value=0.034 Score=62.68 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=42.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|+++.++.+..++.......+-|+|..|+||||+|+.+.+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34556789999999999998876677789999999999999999998754
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.02 E-value=0.027 Score=58.85 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=52.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
....+-|||..|+|||.|.+++++...-...=-.++++ +...+.+.+...+.. .....+++++..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~--------~~~~~~~~~~~~- 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD--------GEIEEFKDRLRS- 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT--------TSHHHHHHHHCT-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc--------ccchhhhhhhhc-
Confidence 45568899999999999999999986532111123343 345566666666543 123557778875
Q ss_pred CcEEEecCccccc
Q 000945 249 KKILVLDNIWTSL 261 (1212)
Q Consensus 249 kr~LVLDDVw~~~ 261 (1212)
-.+|++|||....
T Consensus 98 ~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 98 ADLLIIDDIQFLA 110 (219)
T ss_dssp SSEEEEETGGGGT
T ss_pred CCEEEEecchhhc
Confidence 8888999997653
No 109
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.92 E-value=0.11 Score=49.50 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=76.7
Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH
Q 000945 2 PHFIFS-ATAKVLGQLVGAIPRQLRNYKSNFDDLKKKTEKLKLTLEDLHLWVDAAKENGEEIEQSVEKWLISANTTVVEA 80 (1212)
Q Consensus 2 ae~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~v~~Wl~~lk~~~~~a 80 (1212)
||.+++ +++.+++.+...+ ....+.....+.-+++|..++..|.-++++-+.-+.+.+..-+.=++++.+...++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v----~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAV----IDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Confidence 455544 4555554444444 33455556778888888999999998888877654444444477778888888888
Q ss_pred hHhhhHHHHhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHhhc
Q 000945 81 GKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEE 125 (1212)
Q Consensus 81 ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~ 125 (1212)
+++++.+.. ....++...++.+++|+++.+.+.....-
T Consensus 79 ~~LV~k~sk-------~~r~n~~kk~~y~~Ki~~le~~l~~f~~v 116 (147)
T PF05659_consen 79 KELVEKCSK-------VRRWNLYKKPRYARKIEELEESLRRFIQV 116 (147)
T ss_pred HHHHHHhcc-------ccHHHHHhhHhHHHHHHHHHHHHHHHhcc
Confidence 888875322 12235666778899999999998887653
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.92 E-value=0.082 Score=56.40 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=65.0
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhhhcC-----CCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC-CChhHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLK-----LCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE-GSESERAMVL 241 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~-----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-~~~~~~~~~l 241 (1212)
....-+-|||..|.||||+++.-....-... .+ .++.|......+..++-..|+.+++..... .+.......+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 4566689999999999999999887643211 11 355667778899999999999999887533 3333334333
Q ss_pred HHHHHc-CCcEEEecCcccc
Q 000945 242 CGLLKK-GKKILVLDNIWTS 260 (1212)
Q Consensus 242 ~~~L~~-~kr~LVLDDVw~~ 260 (1212)
.+-++. +-|.||+|.+-+.
T Consensus 138 ~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHcCCcEEEeechHHH
Confidence 343432 3688899999765
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.87 E-value=0.026 Score=71.54 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++||+++++.+++.|......-+-+||.+|+|||++|+.+.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999854444556999999999999999988753
No 112
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.84 E-value=0.045 Score=58.39 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=52.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
...-+.++|..|+|||.||.++-|+.. +..+. +.|++ ..++..+|...... .....++.+.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~~------~~el~~~Lk~~~~~-------~~~~~~l~~~l~~- 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFIT------APDLLSKLKAAFDE-------GRLEEKLLRELKK- 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEEE------HHHHHHHHHHHHhc-------CchHHHHHHHhhc-
Confidence 566789999999999999999999987 44343 44443 45566666555432 2234456666764
Q ss_pred CcEEEecCcccc
Q 000945 249 KKILVLDNIWTS 260 (1212)
Q Consensus 249 kr~LVLDDVw~~ 260 (1212)
=.+|||||+-..
T Consensus 168 ~dlLIiDDlG~~ 179 (254)
T COG1484 168 VDLLIIDDIGYE 179 (254)
T ss_pred CCEEEEecccCc
Confidence 677799999865
No 113
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.012 Score=55.26 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=29.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEE
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVE 207 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~ 207 (1212)
--|+|-||+|+||||+++.+-+..+.+ -|..--|++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEe
Confidence 358999999999999999999988743 377766664
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.0047 Score=63.69 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=67.5
Q ss_pred eeeeecccceeeeeccccccccccccCcccccccceEeEeecCCcc-ccchHHHhhcCccceeEEEccceeEeccccchh
Q 000945 769 LVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIV 847 (1212)
Q Consensus 769 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~ 847 (1212)
++.+++|.|+.|+|+.|.+....... + .-..+|+.|-+.+..+. .-....+..+|.++.|+++-|++..+...+.-.
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~l-p-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSL-P-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccC-c-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 33455899999999998876654221 1 23568888888884432 112234677888888888866554433222100
Q ss_pred hccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCC
Q 000945 848 EHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCE 893 (1212)
Q Consensus 848 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~ 893 (1212)
+.+ -+.+++|+...|+... |.....-...++++..+-+..|+
T Consensus 169 e~~--s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 169 EDW--STEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred ccc--chhhhhhhcCCcHHHH--HHHHHhHHhhcccchheeeecCc
Confidence 111 3567777777776333 22212222334566666666554
No 115
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.72 E-value=0.072 Score=56.17 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=47.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
...+-++|.+|+|||+||.+|.+...- .-..+++++ +..+...+-.... . .. .....+.+.+.+ -
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~-~-~~----~~~~~~l~~l~~-~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFS-N-SE----TSEEQLLNDLSN-V 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHh-h-cc----ccHHHHHHHhcc-C
Confidence 457889999999999999999998752 223445553 3444444443331 1 01 112235556664 6
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
-+||+||+-..
T Consensus 164 dlLvIDDig~~ 174 (244)
T PRK07952 164 DLLVIDEIGVQ 174 (244)
T ss_pred CEEEEeCCCCC
Confidence 77799999765
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.68 E-value=0.091 Score=58.43 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred CcccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 000945 147 GYEAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIA 222 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il 222 (1212)
....+.||+.+++.+-+++. ...-.-+.|.|..|.|||.+...||.+..-...=-.++.+.+..--....+..+|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34567899999999988886 23566789999999999999999999865211111234443333344677888888
Q ss_pred HHh-cCcccCCChhHHHHHHHHHHHcCC-cEE-EecCccccc
Q 000945 223 DQL-GLYICEGSESERAMVLCGLLKKGK-KIL-VLDNIWTSL 261 (1212)
Q Consensus 223 ~~l-~~~~~~~~~~~~~~~l~~~L~~~k-r~L-VLDDVw~~~ 261 (1212)
+.+ .......+..+.+..+.+..+..| -|| |||.++.-.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~ 269 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI 269 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHh
Confidence 777 222222333566777777777644 356 999887653
No 117
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.65 E-value=0.015 Score=63.82 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhCC------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALSN------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|.++.++++++++.. ...++++++|..|.||||||+.+-+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999862 3568899999999999999999998875
No 118
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.65 E-value=0.056 Score=59.37 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhCC----CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCc
Q 000945 153 SRKSILNDALDALSN----PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLY 228 (1212)
Q Consensus 153 gr~~~~~~l~~~L~~----~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 228 (1212)
+|....+...+++.+ ....-+-|+|..|+|||.||.++.+... +..+. +.|++++ .+..++-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHH------HHHHHHHHHHhcC
Confidence 444444555555541 1345788999999999999999999876 23333 4566554 4555554444211
Q ss_pred ccCCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 000945 229 ICEGSESERAMVLCGLLKKGKKILVLDNIWTS 260 (1212)
Q Consensus 229 ~~~~~~~~~~~~l~~~L~~~kr~LVLDDVw~~ 260 (1212)
+ .....+++++ -.+|||||+-.+
T Consensus 207 ----~----~~~~l~~l~~-~dlLiIDDiG~e 229 (306)
T PRK08939 207 ----S----VKEKIDAVKE-APVLMLDDIGAE 229 (306)
T ss_pred ----c----HHHHHHHhcC-CCEEEEecCCCc
Confidence 1 2234455664 777899999755
No 119
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.63 E-value=0.071 Score=56.64 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=56.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCC-CEEEEEEecCCCC-HHHHHHHHHHHhcCcc-----c--CCChh----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLC-DEVVFVEVSQTPD-VKRIQGDIADQLGLYI-----C--EGSES---- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F-~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-----~--~~~~~---- 235 (1212)
.-..++|+|-.|+||||||+.+++..+ .+| +.++++-+-+..+ +..+.+++.+.=..+. . .+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999999887 345 4455556666554 5566666654311110 0 01111
Q ss_pred --HHHHHHHHHHH--cCCcEE-EecCccccc
Q 000945 236 --ERAMVLCGLLK--KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 236 --~~~~~l~~~L~--~~kr~L-VLDDVw~~~ 261 (1212)
..+-.+-++++ .|+.+| |+||+-.-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 12233455553 269999 999986543
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.59 E-value=0.05 Score=71.43 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=65.0
Q ss_pred cccchHHHHHHHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec-CCCCHHHHHHHHHHHhcC
Q 000945 150 AFESRKSILNDALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS-QTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs-~~~~~~~l~~~il~~l~~ 227 (1212)
+++-|. .+++.|.. ...+++-|.|++|.||||++...... ++.++|+++. .+-+...+...++..+..
T Consensus 15 ~~~~R~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 15 NTVVRE----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred ccCcch----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 445553 45555542 36789999999999999999987742 3368999996 455677777888777742
Q ss_pred cccC--------------CChhHHHHHHHHHHHc-CCcEE-EecCcccc
Q 000945 228 YICE--------------GSESERAMVLCGLLKK-GKKIL-VLDNIWTS 260 (1212)
Q Consensus 228 ~~~~--------------~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~ 260 (1212)
.... .........+...+.. +..++ ||||+-..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~ 133 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI 133 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC
Confidence 1110 1112233344444443 46788 99999655
No 121
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.57 E-value=0.044 Score=63.90 Aligned_cols=52 Identities=25% Similarity=0.223 Sum_probs=39.6
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|.+..++.+.+.+. . ...+-|-++|..|.|||++|+++++...
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 44456668889988888877653 1 1234578999999999999999999865
No 122
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.55 E-value=0.029 Score=65.22 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=47.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
...+-|+|..|+|||+||+++++.......=-.++++. ...+..++...+... ....+++++++ -
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHh-C
Confidence 35688999999999999999999876221011234443 233444555554321 13345566664 5
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
.+|||||+...
T Consensus 201 dlLiiDDi~~l 211 (405)
T TIGR00362 201 DLLLIDDIQFL 211 (405)
T ss_pred CEEEEehhhhh
Confidence 67799999754
No 123
>PRK06921 hypothetical protein; Provisional
Probab=95.55 E-value=0.052 Score=58.41 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=44.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
....+.++|..|+|||+||++|.+...-+. -..++|+... .+...+...+ +......+.+.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~~- 177 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMKK- 177 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhcC-
Confidence 456789999999999999999999765221 2345666542 2222222211 111223445553
Q ss_pred CcEEEecCcc
Q 000945 249 KKILVLDNIW 258 (1212)
Q Consensus 249 kr~LVLDDVw 258 (1212)
--+|||||+.
T Consensus 178 ~dlLiIDDl~ 187 (266)
T PRK06921 178 VEVLFIDDLF 187 (266)
T ss_pred CCEEEEeccc
Confidence 5677999993
No 124
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.031 Score=62.34 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=49.5
Q ss_pred ccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh----hhcCCCCEEEEEEe-cCCCCHHH
Q 000945 149 EAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA----KKLKLCDEVVFVEV-SQTPDVKR 216 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~----~v~~~F~~~~wv~v-s~~~~~~~ 216 (1212)
..++|.+..++.+.+++..+.+ +.+-++|+.|+||||+|+.++... ....|+|...|... .+...+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH
Confidence 4577888889999999876554 456799999999999999999853 22467787777652 33344444
No 125
>PRK06696 uridine kinase; Validated
Probab=95.50 E-value=0.018 Score=60.61 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 153 SRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 153 gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|.+-+++|.+.+. .+...+|+|.|.+|.||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566667776664 45788999999999999999999998765
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.49 E-value=0.029 Score=53.47 Aligned_cols=23 Identities=43% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|-|+|..|+||||+|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 46899999999999999999875
No 127
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.46 E-value=0.043 Score=55.10 Aligned_cols=74 Identities=28% Similarity=0.326 Sum_probs=45.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
-.-+.|+|..|+|||.||.++-+...- .... +.|+.+ ..+... +........ ...+.+++.+ -
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~-v~f~~~------~~L~~~----l~~~~~~~~----~~~~~~~l~~-~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KGYS-VLFITA------SDLLDE----LKQSRSDGS----YEELLKRLKR-V 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEEH------HHHHHH----HHCCHCCTT----HCHHHHHHHT-S
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcc-eeEeec------Cceecc----ccccccccc----hhhhcCcccc-c
Confidence 456899999999999999999887653 3333 455543 333333 332211111 2235567775 7
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
.+|||||+-..
T Consensus 110 dlLilDDlG~~ 120 (178)
T PF01695_consen 110 DLLILDDLGYE 120 (178)
T ss_dssp SCEEEETCTSS
T ss_pred cEeccccccee
Confidence 88899998755
No 128
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.45 E-value=0.59 Score=54.06 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=26.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV 208 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v 208 (1212)
-.+|.++|.+|+||||++..+-........-..++.|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 358999999999999988887655431122234555543
No 129
>PTZ00301 uridine kinase; Provisional
Probab=95.44 E-value=0.02 Score=59.00 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+|||-|..|.||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 130
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.38 E-value=0.017 Score=65.01 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=40.5
Q ss_pred CCcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|+++.++.+..++. ......+-|+|+.|+||||+|+.+.+...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 356678999999988876664 23456788999999999999999999765
No 131
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.24 E-value=0.09 Score=57.32 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-.+|+|+|.+|+||||++..+......
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999998876653
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.057 Score=62.70 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=46.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
..-+-|+|..|+|||+||+++.+.... .--.++++. ...+...+...+... .....++.+.. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~~-~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYRN-V 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHccc-C
Confidence 356889999999999999999998762 222233432 234445555555321 12334555553 6
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
.+|++||+...
T Consensus 204 dvLiIDDiq~l 214 (445)
T PRK12422 204 DALFIEDIEVF 214 (445)
T ss_pred CEEEEcchhhh
Confidence 67799998654
No 133
>PRK08181 transposase; Validated
Probab=95.19 E-value=0.064 Score=57.47 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=45.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
-.-+-|+|..|+|||.||.++-+... +..-.+.|+.+ ..+..++..... .. ....+.+++.+ -
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~------~~L~~~l~~a~~----~~----~~~~~l~~l~~-~ 168 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRT------TDLVQKLQVARR----EL----QLESAIAKLDK-F 168 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeH------HHHHHHHHHHHh----CC----cHHHHHHHHhc-C
Confidence 34589999999999999999998765 33334455543 445555433211 11 12234455653 5
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
.+||+||+-..
T Consensus 169 dLLIIDDlg~~ 179 (269)
T PRK08181 169 DLLILDDLAYV 179 (269)
T ss_pred CEEEEeccccc
Confidence 56699998644
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.18 E-value=0.053 Score=63.15 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=48.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCC-EEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCD-EVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~-~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
..-+-|||..|+|||+||+++.+.... .+.+ .++|++. ..+..++...+... .....+++....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHHhc
Confidence 445899999999999999999998752 2333 3445443 34555665555321 122344455422
Q ss_pred CcEEEecCcccc
Q 000945 249 KKILVLDNIWTS 260 (1212)
Q Consensus 249 kr~LVLDDVw~~ 260 (1212)
-.+|++||+...
T Consensus 195 ~dvLlIDDi~~l 206 (440)
T PRK14088 195 VDVLLIDDVQFL 206 (440)
T ss_pred CCEEEEechhhh
Confidence 556799999854
No 135
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.18 E-value=0.071 Score=60.96 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=40.2
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+......+.|+++.++.+.+.+. . ...+-|-++|..|+||||+|+++.+...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 34455678899999998887663 1 1234588999999999999999999765
No 136
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.071 Score=65.35 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=40.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceE-EEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNV-IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~v-i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....|+|.+..++.|.+++..+.+.- +-++|..|+||||+|+.+.+...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 345678899999988888887666554 47999999999999999998754
No 137
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.097 Score=61.19 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=39.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+...+..+.+ +.+-++|..|+||||+|+.+.+...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456688998888888777776666 4578999999999999999987643
No 138
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.23 Score=58.20 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+-||.++-++.|++.+- +..-.++..+|+.|||||.+|+.|-.-..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn 463 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN 463 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence 35788999999999875 34678999999999999999999998655
No 139
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.084 Score=62.42 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=39.7
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455688999999988888876554 446789999999999999998754
No 140
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.04 E-value=0.83 Score=53.13 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=30.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
-.||+++|..|+||||++..+......++.-..++.|+. +.|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~Ri 299 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRI 299 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-Cccch
Confidence 369999999999999999999986643322223444433 34543
No 141
>PRK05642 DNA replication initiation factor; Validated
Probab=95.03 E-value=0.036 Score=58.67 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=42.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
...+.|||..|+|||.||+++.+...- .-..++|++..+ +... ...+.+++.+ -
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~--~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ--RGEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C
Confidence 357899999999999999999886542 223456665432 1111 1234555654 4
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
.+||+||+...
T Consensus 99 d~LiiDDi~~~ 109 (234)
T PRK05642 99 ELVCLDDLDVI 109 (234)
T ss_pred CEEEEechhhh
Confidence 56799999644
No 142
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.00 E-value=0.076 Score=61.93 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=48.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
..-+-|+|..|+|||+|++++.+.......=-.+++ ++ ...+...+...++.. ......+++++.+ -
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~y--v~----~~~f~~~~~~~l~~~------~~~~~~~~~~~~~-~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSY--MS----GDEFARKAVDILQKT------HKEIEQFKNEICQ-N 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEE--EE----HHHHHHHHHHHHHHh------hhHHHHHHHHhcc-C
Confidence 355889999999999999999996652211112233 32 345667776666421 1223445566653 5
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
-+||+||+...
T Consensus 208 dvLiIDDiq~l 218 (450)
T PRK14087 208 DVLIIDDVQFL 218 (450)
T ss_pred CEEEEeccccc
Confidence 56699999654
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.99 E-value=0.096 Score=66.44 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=41.1
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++||+.+++.+++.|......-+-+||..|+||||+|+.+-...
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999985555556699999999999999998865
No 144
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.29 Score=57.73 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-+|.++-++.|++.|. +-.-.++..||++|||||.||+.|-.-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 3678888999999885 23457999999999999999999998665
No 145
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.081 Score=61.04 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....|+|.+..++.+..++..+.+. .+-++|+.|+||||+|+.+-+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556889998888888888766654 477999999999999999887654
No 146
>PRK07667 uridine kinase; Provisional
Probab=94.96 E-value=0.029 Score=57.46 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=30.1
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 158 LNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 158 ~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.|++.+. .....+|||-|.+|.||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555554 34568999999999999999999998765
No 147
>PRK06547 hypothetical protein; Provisional
Probab=94.94 E-value=0.036 Score=55.14 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 160 DALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 160 ~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+...+......+|+|.|..|.||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444445678899999999999999999998864
No 148
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.94 E-value=0.022 Score=54.12 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=20.5
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 149
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.02 Score=56.89 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+|+|-||=|+||||||+.+-++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 150
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.89 E-value=0.024 Score=58.24 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=22.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
||||.|.+|.||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999776
No 151
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.87 E-value=1.6 Score=50.42 Aligned_cols=86 Identities=27% Similarity=0.224 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH--HHHHHHHHHHhcCcccCC----ChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV--KRIQGDIADQLGLYICEG----SESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~--~~l~~~il~~l~~~~~~~----~~~~~~~~l~ 242 (1212)
...+|-++|..|+||||.|..+.....- ..+ .++.|+ .+.|.. ..-++.+.+.++...... +.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~-~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVA-ADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEec-CCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4678999999999999999999877652 222 233333 234444 333445556655443221 1112223333
Q ss_pred HHHHcCCcEEEecCcc
Q 000945 243 GLLKKGKKILVLDNIW 258 (1212)
Q Consensus 243 ~~L~~~kr~LVLDDVw 258 (1212)
+++.. ..++|+|.--
T Consensus 171 ~~~~~-~DvVIIDTAG 185 (437)
T PRK00771 171 EKFKK-ADVIIVDTAG 185 (437)
T ss_pred HHhhc-CCEEEEECCC
Confidence 44443 4555888653
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.82 E-value=3.3 Score=46.03 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
-.-+.++|..|+|||+||++|-+...-+ . -.++|+++.+ +...+...- .+ . ..+... ..+.+.+ -
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~-g-~~V~y~t~~~------l~~~l~~~~-~~--~--~~~~~~-~~~~l~~-~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR-G-KSVIYRTADE------LIEILREIR-FN--N--DKELEE-VYDLLIN-C 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC-C-CeEEEEEHHH------HHHHHHHHH-hc--c--chhHHH-HHHHhcc-C
Confidence 3779999999999999999999987522 2 2456655433 333332210 01 0 111111 1455553 5
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
-+|||||+-.+
T Consensus 248 DLLIIDDlG~e 258 (329)
T PRK06835 248 DLLIIDDLGTE 258 (329)
T ss_pred CEEEEeccCCC
Confidence 67799999655
No 153
>PRK06526 transposase; Provisional
Probab=94.75 E-value=0.074 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.192 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.-+-|+|.+|+|||+||+++-+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999988765
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.75 E-value=0.091 Score=64.98 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=38.9
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...++||+++++.+++.|....-.-+-++|..|+|||++|+.+....
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998875433444589999999999999999865
No 155
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.11 Score=62.19 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh
Q 000945 147 GYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
....++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+-+..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678988888888888876655 566899999999999999986543
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.73 E-value=0.11 Score=54.08 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=38.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
.-+++-|+|.+|.||||+|..+..... ..-..++|+.... |...++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH
Confidence 357899999999999999998776554 3457889998876 777666553
No 157
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.66 E-value=0.026 Score=58.71 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|+|+|..|.||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998654
No 158
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.63 E-value=0.047 Score=57.79 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+|||.|..|.|||||++.+.+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999998766
No 159
>PRK09183 transposase/IS protein; Provisional
Probab=94.63 E-value=0.15 Score=54.75 Aligned_cols=26 Identities=42% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-..+.|+|..|+||||||.++.+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34677999999999999999987654
No 160
>PHA00729 NTP-binding motif containing protein
Probab=94.63 E-value=0.046 Score=56.09 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=29.5
Q ss_pred HHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 159 NDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.+++.+...+...|.|.|.+|+||||||..|-+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666667789999999999999999998864
No 161
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.58 E-value=0.033 Score=58.11 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
....+|+|.|..|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999865
No 162
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.036 Score=65.33 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=47.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 147 GYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
....++|.+..++.+..++..+.+ +.+-++|..|+||||+|+.+.+...-...+...||.|.+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 455678998888888888876554 456899999999999999999876533344556776654
No 163
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.54 E-value=0.043 Score=55.40 Aligned_cols=36 Identities=39% Similarity=0.565 Sum_probs=29.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+|.|+|+.|.||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 345899999999999999999999876 456666665
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.51 E-value=0.2 Score=59.02 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=46.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCC--EEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHc
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCD--EVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKK 247 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~ 247 (1212)
..-+-|+|..|+|||+||+++.+... +.+. .+.++.. ..+..++...+... ....++++++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYRS 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHhc
Confidence 45688999999999999999999876 3332 2334332 23334444444211 12345566664
Q ss_pred CCcEEEecCcccc
Q 000945 248 GKKILVLDNIWTS 260 (1212)
Q Consensus 248 ~kr~LVLDDVw~~ 260 (1212)
-.+||+||+...
T Consensus 212 -~dlLiiDDi~~l 223 (450)
T PRK00149 212 -VDVLLIDDIQFL 223 (450)
T ss_pred -CCEEEEehhhhh
Confidence 566699999754
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.45 E-value=0.16 Score=64.83 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=40.6
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++||+.+++.++..|....-.-+-+||..|+||||+|+.+..+..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4456899999999999998755545566899999999999999888753
No 166
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.036 Score=56.06 Aligned_cols=27 Identities=44% Similarity=0.519 Sum_probs=24.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.+|||-|.+|.||||+|+.+++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999999776
No 167
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.2 Score=60.39 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+-+...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999998876553 4556999999999999998877653
No 168
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=1.9 Score=52.87 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC--HHHHHHHHHHHhcCcccC-CChhHHHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD--VKRIQGDIADQLGLYICE-GSESERAMVLCGLLK 246 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~~-~~~~~~~~~l~~~L~ 246 (1212)
-.||+++|..|+||||.+.++-......+.-..+..++ .+.|. ...-++...+.++..... .+..+... ..++++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit-~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~-al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT-TDSFRIGALEQLRIYGRILGVPVHAVKDAADLRF-ALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec-CcccchHHHHHHHHHHHhCCCCccccCCHHHHHH-HHHHhc
Confidence 36999999999999999988887653222122344443 33454 333334444455544332 23333333 334555
Q ss_pred cCCcEEEecCcc
Q 000945 247 KGKKILVLDNIW 258 (1212)
Q Consensus 247 ~~kr~LVLDDVw 258 (1212)
+ +.++++|=.-
T Consensus 263 ~-~D~VLIDTAG 273 (767)
T PRK14723 263 D-KHLVLIDTVG 273 (767)
T ss_pred C-CCEEEEeCCC
Confidence 3 6666778554
No 169
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.41 E-value=0.05 Score=63.02 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=40.4
Q ss_pred cccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|.++.++.|++.|. +..-.++.++|+.|+||||||+.+-+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999999883 55678999999999999999999998654
No 170
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.39 E-value=0.19 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|||.|..|.||||+|+.+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 171
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.06 Score=55.81 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=39.4
Q ss_pred CCCcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 145 SEGYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
+.....++|.++-++.+-=.+. ...+.-|-++|++|+||||||.-|-|...+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 3445667888776666543333 456788999999999999999999998764
No 172
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.19 Score=60.31 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+..
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34667899999999999988866544 67899999999999999987754
No 173
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.30 E-value=0.014 Score=53.21 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=62.0
Q ss_pred ceeeeccCCccccccH---HHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhh
Q 000945 267 LEILSLVDSNIEQLPE---EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 343 (1212)
Q Consensus 267 Lr~L~ls~~~i~~lp~---~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~ 343 (1212)
+..++|+.+.+-.+++ .+....+|...+|++| .++.+|+....+..-+..|++.+|.+. ..+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neis------------dvPeE 95 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEIS------------DVPEE 95 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhh------------hchHH
Confidence 4556777776665554 4445556666788888 788888875555557778888888773 45667
Q ss_pred hhcCCCCCcceeeecccccCCCCc
Q 000945 344 LKLLSHLTTLEIQICDAMILPKGL 367 (1212)
Q Consensus 344 L~~l~~L~~L~l~~~~~~~~p~~~ 367 (1212)
+..++.|+.+++.+|.+..+|+-+
T Consensus 96 ~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HhhhHHhhhcccccCccccchHHH
Confidence 777888888888888877777654
No 174
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.24 Score=58.23 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..+..+...+..+.+ .-+-++|..|+||||+|+.+.+...
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456678888888877776665543 4677999999999999999998754
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.23 E-value=0.04 Score=45.27 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+|+|.|..|.||||+|+.+-+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998873
No 176
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.18 E-value=0.015 Score=52.97 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=65.9
Q ss_pred cceeeeccCCccccccHHHHhh-cccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQL-TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L-~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
+|...++++|.+..+|..|... .....|++++| .|..+|.+ +..+..|+.|+++.|.+. ..+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~------------~~p~vi 119 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLN------------AEPRVI 119 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccc------------cchHHH
Confidence 5777899999999998887654 47888999999 89999998 899999999999998874 334444
Q ss_pred hcCCCCCcceeeecccccCCCCc
Q 000945 345 KLLSHLTTLEIQICDAMILPKGL 367 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~~ 367 (1212)
..|.+|-.|+...+....+|-|+
T Consensus 120 ~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred HHHHhHHHhcCCCCccccCcHHH
Confidence 44556666666666555555553
No 177
>PRK06851 hypothetical protein; Provisional
Probab=94.18 E-value=0.48 Score=52.97 Aligned_cols=57 Identities=19% Similarity=0.006 Sum_probs=39.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecC
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQ 210 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~ 210 (1212)
.+..|++.. .+.++ .+--+++.|-|..|+|||||++.++.... ++-+++-++-|-+.
T Consensus 197 ~Tp~G~~s~---~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~d 253 (367)
T PRK06851 197 ITPKGAVDF---VPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGFD 253 (367)
T ss_pred cCCCcHHhh---HHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCC
Confidence 344454433 44444 33457899999999999999999999875 35566666655543
No 178
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.17 Score=61.10 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+.+++..+.+ +.+-++|..|+||||+|+.+-+...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788999888888888876555 4478999999999999999887654
No 179
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.09 E-value=0.23 Score=52.44 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=36.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQ 218 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~ 218 (1212)
.-.++-|+|.+|.||||+|..+..... ..-..++|++.. .++..++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHH
Confidence 457899999999999999999877654 335778899876 67766654
No 180
>PRK08233 hypothetical protein; Provisional
Probab=94.08 E-value=0.04 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 181
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.21 Score=59.32 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=40.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCC-ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPN-VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~-~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.+..++..+. -+.+-++|..|+||||+|+.+-+..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446678999999999999988655 3567899999999999999987764
No 182
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.02 E-value=0.022 Score=66.52 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=73.5
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
.+..|++.+|.|..+...+..+.+|++|++++| .|..+.. +..+..|+.|++.+|.+. .+..+.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~-------------~~~~~~ 159 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLIS-------------DISGLE 159 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcch-------------hccCCc
Confidence 689999999999999877899999999999999 8988876 789999999999999985 456666
Q ss_pred cCCCCCcceeeecccccCCC
Q 000945 346 LLSHLTTLEIQICDAMILPK 365 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~ 365 (1212)
.+..|+.+++.+|.+..+..
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhhcccCCcchhhhhhh
Confidence 78889999999998876665
No 183
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.00 E-value=0.16 Score=54.20 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCC----CCEEEEEEecCCCCHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKL----CDEVVFVEVSQTPDVKRIQG 219 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~----F~~~~wv~vs~~~~~~~l~~ 219 (1212)
.-.++.|+|..|.||||||..+.-....... -..++|++....|+..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 4578999999999999999998644322221 36889998888888766644
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.00 E-value=0.069 Score=67.46 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......++||+.++..+++.|......-+-+||.+|+||||+|+.+.....
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 344567899999999999998865555666999999999999999998753
No 185
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.23 Score=58.92 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=40.7
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999988866544 567899999999999999887653
No 186
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.94 E-value=0.12 Score=49.51 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=28.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecC
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQ 210 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~ 210 (1212)
.+|+|+|.-|.|||||++.+.+... +..+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999876 24455555554443
No 187
>PRK06762 hypothetical protein; Provisional
Probab=93.91 E-value=0.05 Score=54.34 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|.|+.|.||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999865
No 188
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.33 Score=56.59 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHH
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
....+++|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+-..
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 34567889988888887777766655 6889999999999999988664
No 189
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.29 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..++|+|+|.+|+||||++..+-....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 347999999999999999999987654
No 190
>PRK10536 hypothetical protein; Provisional
Probab=93.86 E-value=0.14 Score=53.60 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=41.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE 202 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~ 202 (1212)
.+..++.+|......++.++.+. .+|.+.|..|.|||+||.++.-+.-....|+.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~k 106 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDR 106 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeE
Confidence 34556778888888888888753 58999999999999999998886432344443
No 191
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.83 E-value=0.24 Score=54.26 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=53.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~ 242 (1212)
.-+++-|+|..|+||||||.++..... ..=..++||..-..++.. .++.++.+.. ..+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 457889999999999999888665544 234567788776666653 3455554321 123344444444
Q ss_pred HHHHcCCcEE-EecCcccc
Q 000945 243 GLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~kr~L-VLDDVw~~ 260 (1212)
..++.+.--+ |+|.|-..
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 4444433445 99987643
No 192
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.82 E-value=0.33 Score=48.13 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=30.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD 213 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~ 213 (1212)
++.|+|..|.||||+|+.+-.... ..-..++|+.....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 468999999999999999988765 3445667776655543
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.80 E-value=2.3 Score=54.24 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHhC-------CC--CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS-------NP--NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~-------~~--~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++|.+..++.+.+.+. +. ...++-++|..|+||||+|+.+.+..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36788888877777664 11 23578899999999999999999754
No 194
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.27 Score=58.23 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=40.8
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+.+++..+.+. .+-++|..|+||||+|+.+-+...
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999999766554 467999999999999999888653
No 195
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.75 E-value=0.24 Score=54.30 Aligned_cols=85 Identities=26% Similarity=0.334 Sum_probs=53.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~ 242 (1212)
.-+++-|+|..|.||||||-.+.-... ..-..++||..-..++.. .++.++.+.. ..+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 456888999999999999998765544 334678888877777753 3444444311 123344444444
Q ss_pred HHHHcCCcEE-EecCcccc
Q 000945 243 GLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~kr~L-VLDDVw~~ 260 (1212)
..++.+.--+ |+|.|-..
T Consensus 127 ~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHhccCCCEEEEcchHhh
Confidence 4444434445 99987643
No 196
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.72 E-value=0.27 Score=53.66 Aligned_cols=85 Identities=22% Similarity=0.297 Sum_probs=54.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~ 242 (1212)
.-+++-|+|..|+||||||-.+..... +.-..++||.....++... ++.++.+.. ..+.++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 356899999999999999999998764 4457789999888777654 455555432 234445555555
Q ss_pred HHHHcCCcEE-EecCcccc
Q 000945 243 GLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~kr~L-VLDDVw~~ 260 (1212)
.-++.+..-+ |+|.|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 5566655556 88987654
No 197
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.68 E-value=0.086 Score=59.19 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=41.8
Q ss_pred cCCCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh
Q 000945 144 CSEGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+.....++|.++.++.+..++..+.. .++-++|..|+||||+|+++++..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 345567788999999999998876554 566669999999999999999865
No 198
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.67 E-value=0.31 Score=49.04 Aligned_cols=24 Identities=50% Similarity=0.549 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++.++|++|.||||+++.+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 788999999999999999988765
No 199
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.65 E-value=0.51 Score=49.94 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCC------CEEEEEEecCCCCHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLC------DEVVFVEVSQTPDVKRIQG 219 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F------~~~~wv~vs~~~~~~~l~~ 219 (1212)
.-.++.|+|..|.||||||..+--... ..- ..++|+.....|+..++.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHHH
Confidence 467899999999999999998865543 223 5678998888888766643
No 200
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.59 E-value=0.07 Score=54.64 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE--Ee-----cCCCCHHHHH--HHHHHHhcCcccC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV--EV-----SQTPDVKRIQ--GDIADQLGLYICE 231 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv--~v-----s~~~~~~~l~--~~il~~l~~~~~~ 231 (1212)
....|-++||+|.||||..|.++.....+..=..++-+ .| .-+-|+++.. ++.+++.+....+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 45578899999999999999999988733222222222 11 1233454433 4677776665443
No 201
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.26 Score=59.40 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....|+|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+.+...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34567889999898888888766654 356899999999999999987654
No 202
>PRK04040 adenylate kinase; Provisional
Probab=93.55 E-value=0.065 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|+|+|+.|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988763
No 203
>PRK03839 putative kinase; Provisional
Probab=93.54 E-value=0.059 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|.|.||.|.||||+|+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 204
>PRK09354 recA recombinase A; Provisional
Probab=93.47 E-value=0.23 Score=54.93 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~ 242 (1212)
.-+++=|+|..|.||||||-++.-... ..=..++||..-..++.. .++.++.+.. ..+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 456888999999999999998766544 334778898887777753 3455554321 123444444454
Q ss_pred HHHHcCCcEE-EecCcccc
Q 000945 243 GLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~kr~L-VLDDVw~~ 260 (1212)
..++.++--+ |+|.|-..
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 4444444445 99987643
No 205
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.45 E-value=0.077 Score=52.96 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=41.4
Q ss_pred ccCCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 143 MCSEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+.....|+|.++.++.+--+-.++++.-+-|-||+|+||||=+..+....
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3344566789998888877777778899999999999999999777666543
No 206
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.43 E-value=0.055 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
||+|.|..|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999864
No 207
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.34 E-value=0.15 Score=55.18 Aligned_cols=26 Identities=35% Similarity=0.266 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...-+-++|..|+||||+|+.+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34557799999999999999998864
No 208
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.33 E-value=0.054 Score=55.92 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
||||.|..|.||||||+.+.+-.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997754
No 209
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.30 E-value=0.2 Score=51.97 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456789999999999999999998864
No 210
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.27 E-value=0.073 Score=54.48 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++.+|.|+|..|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998653
No 211
>PRK13695 putative NTPase; Provisional
Probab=93.26 E-value=0.11 Score=52.28 Aligned_cols=34 Identities=32% Similarity=0.317 Sum_probs=26.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.|+|.|.+|+|||||++.+++.... ..|....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 3789999999999999999987653 345555555
No 212
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.25 E-value=0.31 Score=57.85 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=47.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
...+-|||-.|+|||.|+++|.+.......--.+.++. ...+..++...+... ....+++++.+ -
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~-~ 378 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYRE-M 378 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhc-C
Confidence 34589999999999999999999865211112234443 234444554444211 12345566664 5
Q ss_pred cEEEecCcccc
Q 000945 250 KILVLDNIWTS 260 (1212)
Q Consensus 250 r~LVLDDVw~~ 260 (1212)
-+||+||+...
T Consensus 379 DLLlIDDIq~l 389 (617)
T PRK14086 379 DILLVDDIQFL 389 (617)
T ss_pred CEEEEehhccc
Confidence 67799999765
No 213
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.18 E-value=0.37 Score=50.63 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD 213 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~ 213 (1212)
.-.++-|.|.+|+||||+|..+..... ..=..++|+.....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 457899999999999999999876554 2234667887655554
No 214
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.17 E-value=0.11 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...-+|||.|..|+||||+|+.+-.-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876544
No 215
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.16 E-value=0.085 Score=51.11 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|-++|+.|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
No 216
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.13 E-value=0.068 Score=48.54 Aligned_cols=23 Identities=43% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|-|+|.+|+|||++|+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887765
No 217
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.12 E-value=0.093 Score=50.62 Aligned_cols=34 Identities=38% Similarity=0.342 Sum_probs=27.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.||-|.|..|.||||||++++.... ..-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEe
Confidence 5889999999999999999999876 333445555
No 218
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.03 E-value=0.1 Score=59.85 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......+.|+++.++++.+.+. . ...+-|-++|..|+|||++|+++.+...
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 3344567899999988877653 1 2345588999999999999999998764
No 219
>PRK10867 signal recognition particle protein; Provisional
Probab=92.90 E-value=5.3 Score=46.11 Aligned_cols=58 Identities=28% Similarity=0.277 Sum_probs=35.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHH--HHHHHHHhcCc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRI--QGDIADQLGLY 228 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l--~~~il~~l~~~ 228 (1212)
...+|.++|..|+||||.|-.+-.... .....++.+.-.+.|....+ ++...+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~--~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK--KKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 467999999999999998777766544 22233444444455655432 23344555443
No 220
>PRK00625 shikimate kinase; Provisional
Probab=92.88 E-value=0.084 Score=52.57 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|-++||.|+||||+|+.+-+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999977653
No 221
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.86 E-value=0.26 Score=47.41 Aligned_cols=43 Identities=28% Similarity=0.327 Sum_probs=31.9
Q ss_pred EEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHH
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
|-++|..|+|||+||+.+..... ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 46899999999999999998763 23344577888887776543
No 222
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=92.81 E-value=0.71 Score=36.61 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=47.9
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcC
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLC 1176 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~ 1176 (1212)
+++.++|. ++|..|...+.+.+...+||....++...++++|..+ .+...+...+...+.
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGY 65 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 45678887 8999999999999999999999999999988887642 566666666655443
No 223
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.79 E-value=0.2 Score=56.26 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
....+-|||..|.|||.|++++.|... .+......++++. .....+++..+.. ......+++. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~s----e~f~~~~v~a~~~--------~~~~~Fk~~y-~- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLTS----EDFTNDFVKALRD--------NEMEKFKEKY-S- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEeccH----HHHHHHHHHHHHh--------hhHHHHHHhh-c-
Confidence 478899999999999999999999877 5555444455543 2223333333221 2344556666 4
Q ss_pred CcEEEecCccccc
Q 000945 249 KKILVLDNIWTSL 261 (1212)
Q Consensus 249 kr~LVLDDVw~~~ 261 (1212)
-.+|++||++...
T Consensus 176 ~dlllIDDiq~l~ 188 (408)
T COG0593 176 LDLLLIDDIQFLA 188 (408)
T ss_pred cCeeeechHhHhc
Confidence 5566889988653
No 224
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.16 Score=57.89 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=40.0
Q ss_pred CcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|.+..++.+.+.+..+.+ +.+-++|..|+||||+|+.+.+...
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455688999999988888876554 4678999999999999999988653
No 225
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.73 E-value=0.4 Score=57.29 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=36.1
Q ss_pred ccCCCcccccchHHHHHHHHHHh---CC---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 143 MCSEGYEAFESRKSILNDALDAL---SN---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L---~~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+......+.|.++.++++.+++ .. ...+-+-++|..|.||||+|+++.+...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 34445566778777766555433 21 1123477899999999999999988654
No 226
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.73 E-value=0.6 Score=51.88 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH--HHHHHHHHHHhcCcccC-CChhHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV--KRIQGDIADQLGLYICE-GSESERAMVLCGLL 245 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~--~~l~~~il~~l~~~~~~-~~~~~~~~~l~~~L 245 (1212)
...+|.|+|..|+||||++..+-.....+. ..+++|+. +.|.. ..-++...+.++..... .+..+....+ +++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lIta-DtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITT-DTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC-CccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHH
Confidence 467999999999999999999877654222 23455544 44543 33344444444443222 2333333333 334
Q ss_pred H--cCCcEEEecCccc
Q 000945 246 K--KGKKILVLDNIWT 259 (1212)
Q Consensus 246 ~--~~kr~LVLDDVw~ 259 (1212)
+ ++..++++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 3 2245557775543
No 227
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.69 E-value=0.041 Score=33.22 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=8.5
Q ss_pred ceeeeccCCccccccHHH
Q 000945 267 LEILSLVDSNIEQLPEEM 284 (1212)
Q Consensus 267 Lr~L~ls~~~i~~lp~~i 284 (1212)
|++||+++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 228
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.013 Score=59.98 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=23.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEE
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELR 833 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~ 833 (1212)
+.+.+.|+..|+.+..+. ....++.|..|.|+-|.+.++.+ +..|+.|++|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLR 71 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLR 71 (388)
T ss_pred HHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHH
Confidence 344555555555554442 12234444444444444444332 3344444444444
No 229
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.68 E-value=0.15 Score=49.70 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
||+|+|+.|.|||||++++....+. ..+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 6899999999999999999998762 345544443
No 230
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.57 Score=55.96 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=39.3
Q ss_pred CcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
....++|.+..++.+..++..+.+. .+-++|..|+||||+|+.+-...
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556889999899888888866554 45799999999999999987765
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.36 Score=56.52 Aligned_cols=73 Identities=29% Similarity=0.291 Sum_probs=48.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC--CCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT--PDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
.-|-|.|..|+|||+||+++++... +.+.-++.+|.+|.- -.+.++|+.+-.-+ -+.+..+
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~~~ 494 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALWYA 494 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHhhC
Confidence 4577999999999999999999887 556666666766642 23555655544332 2233332
Q ss_pred CcEEEecCcccc
Q 000945 249 KKILVLDNIWTS 260 (1212)
Q Consensus 249 kr~LVLDDVw~~ 260 (1212)
--+.||||+...
T Consensus 495 PSiIvLDdld~l 506 (952)
T KOG0735|consen 495 PSIIVLDDLDCL 506 (952)
T ss_pred CcEEEEcchhhh
Confidence 344499999755
No 232
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.64 E-value=0.13 Score=61.95 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=42.7
Q ss_pred ccCCCcccccchHHHHHHHHHHhCC-----CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 143 MCSEGYEAFESRKSILNDALDALSN-----PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~~-----~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+.....+.|.++.++++..|+.. ....++.|+|..|.||||+++.+.+...
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456677788999988888888863 2346799999999999999999998653
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=0.41 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|+|.+|+||||+|..+-...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987654
No 234
>PRK05439 pantothenate kinase; Provisional
Probab=92.58 E-value=1 Score=49.22 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...-+|||-|..|+||||+|+.+..-..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999999887543
No 235
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.57 E-value=0.12 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+++|+|..|.|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998765
No 236
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.56 E-value=0.038 Score=56.74 Aligned_cols=64 Identities=23% Similarity=0.160 Sum_probs=34.7
Q ss_pred cccCcccEEEEecC--CCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 879 SITENLESLEVWWC--ENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c--~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
-.+++|+.|.++.+ .-...++.....+|+|++|++++ +.+..+-+..-+..+.+|..|++.+|+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 34566677777665 33344444445557777777777 345443322333444455555555554
No 237
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.55 E-value=3 Score=47.81 Aligned_cols=43 Identities=30% Similarity=0.289 Sum_probs=29.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
...||.++|..|+||||+|..+....+- ..+ ++.+.-.+.|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~-~G~--kV~lV~~D~~R~ 141 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR-KGF--KPCLVCADTFRA 141 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCC--CEEEEcCcccch
Confidence 3679999999999999999988776552 223 334433445554
No 238
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.55 E-value=0.086 Score=53.11 Aligned_cols=24 Identities=46% Similarity=0.667 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|+|.|..|.||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 239
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.092 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.++||+|..|.||||||+.+-.=.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34579999999999999999987643
No 240
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.49 E-value=0.16 Score=51.34 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLL 245 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L 245 (1212)
.|+|.|-||+||||+|..+-....-+.-|+. .=|....++++. ++++.+.......+..+.++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL~-------~~LGve~~~~~lg~~~e~~~k~~ 67 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNLP-------EALGVEEPMKYLGGKRELLKKRT 67 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCChH-------HhcCCCCCCcccccHHHHHHHHh
Confidence 6899999999999999996655443332443 223444466643 45666554333444444444443
No 241
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.49 E-value=1.3 Score=55.98 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|.++.++.|.+++. ...-.++.++|..|+||||+|+.+-+...
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 6788888888888664 22345799999999999999999998764
No 242
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.47 E-value=0.45 Score=52.49 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=42.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhc----CCCCEEEEEEecCCCCHHHHHHHHHHHhcCc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKL----KLCDEVVFVEVSQTPDVKRIQGDIADQLGLY 228 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 228 (1212)
.-+++-|+|..|+|||||+..+.-..... ..=..++||+.-..|+..++.+ +++.++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45788899999999999997654322211 1124789999999999998864 56666544
No 243
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.45 E-value=4.9 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=23.9
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHH
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
|.+...|-|.|++-|||+||++.|=.
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 56889999999999999999999976
No 244
>PRK06217 hypothetical protein; Validated
Probab=92.41 E-value=0.1 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|.|.|+.|.||||+|+.+-....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 245
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.39 E-value=0.13 Score=51.88 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|.|.|..|.||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999765
No 246
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.38 E-value=0.79 Score=52.39 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=45.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHH--HHHHHHhcCcccC-CChhHHHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQ--GDIADQLGLYICE-GSESERAMVLCGLLK 246 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~--~~il~~l~~~~~~-~~~~~~~~~l~~~L~ 246 (1212)
-.+|+++|..|+||||++..+-........-+...+++ .+.|.+..+. ....+-++..... .+..+. ......+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~-~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl-~~al~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLT-TDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL-QLMLHELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cCCcchhHHHHHHHHHHHcCCceecCCCHHHH-HHHHHHhc
Confidence 46999999999999999998876432222223444443 3445543332 2233344433322 222232 23344555
Q ss_pred cCCcEEEecCc
Q 000945 247 KGKKILVLDNI 257 (1212)
Q Consensus 247 ~~kr~LVLDDV 257 (1212)
+ +.+..+|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 555566753
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.36 E-value=0.6 Score=52.92 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=48.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC-CCCEEEEEEecCCCCHHHHH--HHHHHHhcCcccCC-ChhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK-LCDEVVFVEVSQTPDVKRIQ--GDIADQLGLYICEG-SESERAMVLCGL 244 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~-~F~~~~wv~vs~~~~~~~l~--~~il~~l~~~~~~~-~~~~~~~~l~~~ 244 (1212)
.-.+|.++|..|+||||.+..+-....... .-...+.+--.+.|...... +...+.++...... +..+....+ .+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 346999999999999999998877654221 12234444334456554432 23333344432222 222332222 33
Q ss_pred HHcCCcEEEecCccc
Q 000945 245 LKKGKKILVLDNIWT 259 (1212)
Q Consensus 245 L~~~kr~LVLDDVw~ 259 (1212)
+. +..++++|..-.
T Consensus 252 ~~-~~DlVLIDTaGr 265 (388)
T PRK12723 252 SK-DFDLVLVDTIGK 265 (388)
T ss_pred hC-CCCEEEEcCCCC
Confidence 43 255558887643
No 248
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.33 E-value=0.78 Score=46.80 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 160 DALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 160 ~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.+.+..+.+ ..+-++|..|+||||+|+.+-+...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555555 5688999999999999999877653
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.30 E-value=0.17 Score=50.18 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec-CCCCHHHHHHHHH
Q 000945 152 ESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS-QTPDVKRIQGDIA 222 (1212)
Q Consensus 152 ~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs-~~~~~~~l~~~il 222 (1212)
+|....+.++++.+. ..+..|+ |+|-.|.||+.+|+.|++.-. .. ..-||.|. ..++...+-.+++
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~~s~--r~--~~pfi~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHNNSP--RK--NGPFISVNCAALPEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHHCST--TT--TS-EEEEETTTS-HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHHhhh--cc--cCCeEEEehhhhhcchhhhhhh
Confidence 456666666666554 4455555 999999999999999999533 11 12344442 2344444444444
No 250
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=0.16 Score=60.22 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=40.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
....+++|++..++.+.+++..+.+. .+-++|+.|+||||+|+.+-+..
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44667889999999999988755444 67799999999999999988765
No 251
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.20 E-value=0.57 Score=54.05 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc----cCCChh--------
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI----CEGSES-------- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~----~~~~~~-------- 235 (1212)
.=..++|+|-.|+|||||+..+-+.... .+-+.++++-+-+..+ +..+..++...-..+. ...+++
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3456899999999999999888876653 3678999988876654 5566666654321110 011111
Q ss_pred -HHHHHHHHHHHc--CCcEE-EecCccccccccccceeeecc
Q 000945 236 -ERAMVLCGLLKK--GKKIL-VLDNIWTSLDLDKKLEILSLV 273 (1212)
Q Consensus 236 -~~~~~l~~~L~~--~kr~L-VLDDVw~~~~~~~~Lr~L~ls 273 (1212)
..+..+-++++. ||.+| ++||+-.-.+ .+|...+.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~---A~REisl~ 259 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQ---AGSEVSGL 259 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHHHH---HHHHHHHh
Confidence 123345566642 69999 9999865433 45555443
No 252
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=0.18 Score=58.07 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=40.8
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..+..+..++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34566889988888888888876654 578999999999999999988643
No 253
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.06 E-value=0.35 Score=59.08 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=56.1
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cC-HHHHHHHHHhhcCceEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---ID-AVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d-~~~~~~~l~k~~~~~~~ 1180 (1212)
+++.+.|+ |+|..|..++. ++.+++||..+.++...++++|..+ .+ +..+..++++.++.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 35678887 99999999999 9999999999999999999998865 56 78999999999997765
No 254
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.03 E-value=0.14 Score=47.53 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=38.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHc
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKK 247 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~ 247 (1212)
.-|-|.|.+|+||||+|+.|-.... | -|+++|+--..+.+...-=++. +....+++...+.|...+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~----~---~~i~isd~vkEn~l~~gyDE~y--~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG----L---EYIEISDLVKENNLYEGYDEEY--KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC----C---ceEehhhHHhhhcchhcccccc--cCccccHHHHHHHHHHHHhc
Confidence 4577999999999999999986443 2 3777775333322222211111 01113444555666666654
No 255
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.01 E-value=0.4 Score=48.83 Aligned_cols=23 Identities=48% Similarity=0.585 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
..+|||.||.|.||||.|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998766
No 256
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.98 E-value=0.13 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987643
No 257
>CHL00181 cbbX CbbX; Provisional
Probab=91.95 E-value=0.32 Score=53.10 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=25.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
.|-++|..|+||||+|+.+.........-...-|+.|+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 47789999999999999998764321211222366666
No 258
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.023 Score=55.74 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=46.6
Q ss_pred ccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccccc
Q 000945 619 NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTT 698 (1212)
Q Consensus 619 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 698 (1212)
.++.++-+++.+...-...+ ..++.++.|.+.+|..+.+---..+-+-.++|+.|+|++|+.|++-+. ...
T Consensus 102 ~IeaVDAsds~I~~eGle~L--~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-------~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL--RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-------ACL 172 (221)
T ss_pred eEEEEecCCchHHHHHHHHH--hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-------HHH
Confidence 35555555553332221111 146677777777776665421111122356777777777777665432 133
Q ss_pred ccCCccceeecccCCc
Q 000945 699 FVFPKVTFLKLWNLSE 714 (1212)
Q Consensus 699 ~~~~~L~~L~l~~~~~ 714 (1212)
..|++|+.|.|.++|.
T Consensus 173 ~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhhhhHHHHhcCchh
Confidence 4466666666666654
No 259
>PRK14974 cell division protein FtsY; Provisional
Probab=91.92 E-value=2.1 Score=47.52 Aligned_cols=57 Identities=30% Similarity=0.317 Sum_probs=34.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHH--HHHHHHHHhcCc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKR--IQGDIADQLGLY 228 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~--l~~~il~~l~~~ 228 (1212)
...+|.++|+.|+||||++..+....+- ..+. ++.+ -.+.|.... -++.....++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~-V~li-~~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFS-VVIA-AGDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCe-EEEe-cCCcCcHHHHHHHHHHHHHcCCc
Confidence 4679999999999999988888766542 3342 2333 234454432 233445555543
No 260
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.035 Score=54.52 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=39.2
Q ss_pred CCCCccccCcccEEEEecCCCcccccC--CccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 874 DSKLDSITENLESLEVWWCENLINLVP--SSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 874 ~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
+...+..+++++.|.+.+|..+...-- -.+-.++|+.|+|++|+.+++-. ...+..+++|+.|.|++-+
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCch
Confidence 344455566666666666665543210 01235677777777777777642 2344556666666666544
No 261
>PRK13531 regulatory ATPase RavA; Provisional
Probab=91.92 E-value=0.23 Score=57.05 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+++||++.++.++..+..+ .-|-|+|..|+||||+|+.+-....
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 4789999999888877643 3467899999999999999998654
No 262
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.92 E-value=0.57 Score=50.22 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=41.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCC----CCEEEEEEecCCCCHHHHHHHHHHHhc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKL----CDEVVFVEVSQTPDVKRIQGDIADQLG 226 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~ 226 (1212)
.-.|.=|+|..|+|||.|+-.+.=...+... =..++||+....|...++. +|++..+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 3568889999999999999877655433222 2458999999999999986 4666544
No 263
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.87 E-value=0.12 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|.|+|..|.||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999843
No 264
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.85 E-value=0.1 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
||.|+|..|.||||+|+.+-....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 265
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.84 E-value=0.67 Score=53.11 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc-------cCCChh------
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI-------CEGSES------ 235 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~------ 235 (1212)
-..++|.|-.|+|||||+..+-.... +.+-+.++|+-+-+..+ +..+.+++...=..+. .+....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45689999999999999999866543 23458899998877664 5566666654311110 011111
Q ss_pred HHHHHHHHHHHc--CCcEE-EecCccccccccccceeeecc
Q 000945 236 ERAMVLCGLLKK--GKKIL-VLDNIWTSLDLDKKLEILSLV 273 (1212)
Q Consensus 236 ~~~~~l~~~L~~--~kr~L-VLDDVw~~~~~~~~Lr~L~ls 273 (1212)
..+..+-++++. |+.+| ++||+-+-.+ .+|.+.+.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~A~---A~REisl~ 254 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRFIQ---AGSEVSGL 254 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHHHH---HHHHHHHH
Confidence 123446666664 79999 9999875543 45555443
No 266
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.87 Score=55.37 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=39.8
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceE-EEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNV-IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~v-i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....|+|.+..++.+..++..+.+.- +-++|.-|+||||+|+.+-...
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 345568899999999999988766554 6799999999999998877654
No 267
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.76 E-value=0.14 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|.|+|+.|.||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.74 E-value=0.22 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+-|+|..|+|||+||+++++...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999764
No 269
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.74 E-value=0.76 Score=52.59 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=59.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH-HHHHHHHHHHhcCcc----cCCChh--------
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV-KRIQGDIADQLGLYI----CEGSES-------- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~-~~l~~~il~~l~~~~----~~~~~~-------- 235 (1212)
.-..++|+|..|+|||||++.+.+... -+..+++-+.+..+. ..+..+.+..-+.+. ...+++
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999998654 356777777776654 355555554322210 011111
Q ss_pred -HHHHHHHHHHH-cCCcEE-EecCccccccccccceeeec
Q 000945 236 -ERAMVLCGLLK-KGKKIL-VLDNIWTSLDLDKKLEILSL 272 (1212)
Q Consensus 236 -~~~~~l~~~L~-~~kr~L-VLDDVw~~~~~~~~Lr~L~l 272 (1212)
..+..+-++++ .||.+| ++||+-.-.+ .+|...+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~A~---A~REisl 269 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRFAM---AQREIGL 269 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHHHh---hhhHHHH
Confidence 12233445553 469999 9999875533 3444443
No 270
>PRK13949 shikimate kinase; Provisional
Probab=91.73 E-value=0.15 Score=50.71 Aligned_cols=25 Identities=40% Similarity=0.377 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-|.|+||.|.||||+|+.+-+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988664
No 271
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.73 E-value=0.13 Score=49.47 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVF 191 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vy 191 (1212)
.|+|-|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 272
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.72 E-value=10 Score=43.86 Aligned_cols=44 Identities=30% Similarity=0.293 Sum_probs=29.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
...+|.++|..|+||||.|..+......+. ..++.+.-.+.|..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRP 141 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccch
Confidence 467999999999999999888776643112 23444433344544
No 273
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.71 E-value=0.046 Score=56.16 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=20.4
Q ss_pred ccccCcccEEEEecCCCcccccC----CccccCCccEEeecccc
Q 000945 878 DSITENLESLEVWWCENLINLVP----SSASFKNLTTLELWYCQ 917 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~c~ 917 (1212)
+..+.+|..|++.+|.... +-. .+..+++|++|+-..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 3445556666666664432 100 12346777777766553
No 274
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.70 E-value=0.15 Score=52.59 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..-.+|+|+|+.|.||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999998653
No 275
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.68 E-value=0.24 Score=55.05 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 149 EAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..|+|.++.+..++-.+.+....-+.|.|..|.|||||++.+-.-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999988888777777666777899999999999999997643
No 276
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.68 E-value=0.74 Score=47.69 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=39.6
Q ss_pred ccCCCcccccchHHHHHHHHHH----hCCCCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 143 MCSEGYEAFESRKSILNDALDA----LSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~----L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
........++|.+.+++.+++= +......-+-+||..|.|||++++++.+...-
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3445566677888888887653 22334555667999999999999999987653
No 277
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.68 E-value=0.2 Score=49.04 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++.|.|+.|+||+||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999965
No 278
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.63 E-value=0.8 Score=52.68 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=61.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc-------cCCChh-----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI-------CEGSES----- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~----- 235 (1212)
.-..++|.|-.|+|||||+..+-....... =+.++++-|-+..+ +..+.++++..=..+. ......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 345689999999999999998876655322 25677887776654 5666676665321110 011111
Q ss_pred -HHHHHHHHHHH--cCCcEE-EecCccccccccccceeeecc
Q 000945 236 -ERAMVLCGLLK--KGKKIL-VLDNIWTSLDLDKKLEILSLV 273 (1212)
Q Consensus 236 -~~~~~l~~~L~--~~kr~L-VLDDVw~~~~~~~~Lr~L~ls 273 (1212)
..+..+-++++ +||.+| ++||+-.-.+ .+|.+.+.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~---A~REisl~ 260 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQ---AGSEVSAL 260 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHH---HHHHHHHh
Confidence 12334556663 379999 9999865433 45555443
No 279
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.59 E-value=4.6 Score=51.81 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhCC-------C--CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALSN-------P--NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~-------~--~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++|.+..++.+.+.+.. . ...++-++|..|+|||++|+.+-...
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999989888887752 1 24568899999999999999999864
No 280
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.54 E-value=0.32 Score=45.58 Aligned_cols=28 Identities=32% Similarity=0.169 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-.+|.+.|.-|.||||++|.+.....+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999987653
No 281
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.54 E-value=0.16 Score=47.29 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998654
No 282
>CHL00176 ftsH cell division protein; Validated
Probab=91.51 E-value=0.41 Score=58.21 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=32.1
Q ss_pred cccccchHHHHHH---HHHHhCCC---------CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILND---ALDALSNP---------NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~---l~~~L~~~---------~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+.|.++.+++ ++..+.+. -.+-|-++|..|.|||++|+++.+...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345565555544 44444422 123578999999999999999988654
No 283
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.46 E-value=0.29 Score=56.36 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=38.5
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|.+..+++|-+.+. . ....-+-++|..|.||||+|++|.+...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34455667888888877766553 1 1234577999999999999999999765
No 284
>PRK13975 thymidylate kinase; Provisional
Probab=91.45 E-value=0.15 Score=52.47 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999775
No 285
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.42 E-value=0.11 Score=47.76 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=18.5
Q ss_pred EEEEecCCCchhHHHHHHHHHhhhcCCCC
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAKKLKLCD 201 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~v~~~F~ 201 (1212)
|-|+|..|+||||+|+.+-.... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 45899999999999999998765 5564
No 286
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.40 E-value=0.14 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
||.|+|+.|+||||+|+.+-...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999997754
No 287
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.39 E-value=0.15 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|+|+|..|.||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999853
No 288
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.38 E-value=1.4 Score=47.22 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQ 224 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~ 224 (1212)
.-+++-|+|..|.||||+|-+++-... ..-..++||+.-..|++.++.. |...
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~-l~~~ 111 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQ-LGVD 111 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHH-HHHh
Confidence 467888999999999999999887665 4455899999999999988744 3443
No 289
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.37 E-value=0.17 Score=45.15 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchhHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVF 191 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vy 191 (1212)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999975
No 290
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.37 E-value=0.15 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|+|+.|.|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997754
No 291
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.36 E-value=0.96 Score=48.13 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=59.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhh--cCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc-----cCCChh------
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKK--LKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI-----CEGSES------ 235 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v--~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-----~~~~~~------ 235 (1212)
=..++|.|-.|+|||||+..|-++... +.+-+.++++-+-+..+ +..+..++.+.=..+. ...++.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456899999999999999998876531 23357889998887654 5667666665321110 001111
Q ss_pred --HHHHHHHHHHHc--CCcEE-EecCcccccc
Q 000945 236 --ERAMVLCGLLKK--GKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 236 --~~~~~l~~~L~~--~kr~L-VLDDVw~~~~ 262 (1212)
-.+..+-++++. ||++| ++||+-.-.+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 123335555553 58999 9999876543
No 292
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.36 E-value=0.14 Score=48.96 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|+|..|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999754
No 293
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.31 E-value=0.26 Score=48.81 Aligned_cols=34 Identities=41% Similarity=0.342 Sum_probs=25.6
Q ss_pred EEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEE
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVE 207 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~ 207 (1212)
|-|-|..|+|||||++.+.+..+- ..+...-|.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~Gf~t 35 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK-KGLPVGGFYT 35 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH-TCGGEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc-cCCccceEEe
Confidence 678999999999999999988752 2455555654
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.30 E-value=0.16 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|.|+|+.|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 295
>PRK13947 shikimate kinase; Provisional
Probab=91.28 E-value=0.16 Score=50.95 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-|.|+||.|+||||+|+.+-+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988654
No 296
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.22 E-value=0.17 Score=47.81 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.|-++|..|.|||||+|++-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999998864
No 297
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.19 E-value=0.3 Score=54.30 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=41.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....|+|.++.+..++....+..+.-|-|.|..|.||||+|+.+|+-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3556889999888888888887777777999999999999999988643
No 298
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.18 E-value=0.71 Score=51.42 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=42.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhcCc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKRIQGDIADQLGLY 228 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 228 (1212)
.-.++-|+|..|+|||+||..+.-...... .=..++||+.-..|...++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 467888999999999999987764332111 11378999999999998874 556666543
No 299
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.14 E-value=0.18 Score=47.94 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..|+.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998877654
No 300
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.10 E-value=0.16 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+|.|.|+.|.||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999998753
No 301
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.10 E-value=1.1 Score=51.05 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHhCCCC----------ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 148 YEAFESRKSILNDALDALSNPN----------VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~----------~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...|+|.+..++.+.+++..+. .+-+-++|+.|+||||+|+.+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3457898888888888887542 4557799999999999999987653
No 302
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.08 E-value=0.72 Score=52.53 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=55.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc----cCCChh--------
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI----CEGSES-------- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~----~~~~~~-------- 235 (1212)
.-..++|+|..|.|||||++.+.+... .+..+++-+.+..+ +..+.++++..-+... ...+++
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 345699999999999999999986433 36778787877665 4556666654322110 011111
Q ss_pred -HHHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 236 -ERAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 236 -~~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
..+..+-++++ .|+.+| ++||+-.-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 11223444442 369999 999987553
No 303
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.04 E-value=0.53 Score=48.07 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=37.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHH--HHHHHHHHHhcCcc
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVK--RIQGDIADQLGLYI 229 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~--~l~~~il~~l~~~~ 229 (1212)
+||.+||..|+||||.+-++......+ =..++.|+ .+.|.+- .-++...+.++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis-~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALIS-ADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE-ESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeec-CCCCCccHHHHHHHHHHHhcccc
Confidence 689999999999998888877766633 33445555 4556543 44456667776653
No 304
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.03 E-value=1.3 Score=55.49 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+|.++.++.|++++. .....++.++|..|+||||+|+.+.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999998876 13456899999999999999999998654
No 305
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.01 E-value=1.1 Score=49.92 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=42.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhc----CCCCEEEEEEecCCCCHHHHHHHHHHHhcCc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKL----KLCDEVVFVEVSQTPDVKRIQGDIADQLGLY 228 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 228 (1212)
.-+++=|+|..|+|||+|+..+.=..... ..-..++||+.-..|+..++.+ |++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45778899999999999998764322211 1125789999999999998755 56666543
No 306
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=91.01 E-value=1.6 Score=45.94 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhHhhhH
Q 000945 25 RNYKSNFDDLKKKTEKLKLTLEDLHLWVDAAKENGEEIEQSVEKWLISANTTVVEAGKLIED 86 (1212)
Q Consensus 25 ~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~~~~~~~v~~Wl~~lk~~~~~aed~ld~ 86 (1212)
-.|...+.-++.|++-++.+|..+|.||+..-+..+...+..+++..++...||++|-++|.
T Consensus 310 ~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 310 GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 34556677889999999999999999998874332333444999999999999999999983
No 307
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.99 E-value=0.4 Score=52.37 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=26.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
-+-++|..|.||||+|+.+..............|+.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 46799999999999998887765422222223466666
No 308
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.96 E-value=1.8 Score=44.51 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
..|.|.|.-|.||||+|+.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999987663
No 309
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=90.93 E-value=0.34 Score=49.30 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 154 RKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 154 r~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
+..+-...++.|. +..++.+.|..|.|||.||-+.--+.-....|+..+++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444556666666 56799999999999999999887766555889988887
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.93 E-value=0.24 Score=51.51 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.8
Q ss_pred CCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 166 SNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 166 ~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+.++++|+++|.-|.|||||.+++....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999998764
No 311
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.92 E-value=0.24 Score=48.04 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhc
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKL 197 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~ 197 (1212)
..|++|+|+-|.|||||...+-...+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4699999999999999999998887743
No 312
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.92 E-value=0.52 Score=50.65 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.6
Q ss_pred HHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 162 LDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 162 ~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-+++...++.+|+|.|..|.|||||+..+-+...
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444456899999999999999999999998765
No 313
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=90.90 E-value=0.89 Score=46.94 Aligned_cols=86 Identities=21% Similarity=0.397 Sum_probs=53.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhcCcc-------cCCChhH------
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP-DVKRIQGDIADQLGLYI-------CEGSESE------ 236 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~------ 236 (1212)
..++|+|..|+|||+|++.+-+... =+..+++.+.+.. .+.++.+++...-..+. ..+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999988764 3555888887764 45666666644311110 0111110
Q ss_pred HHHHHHHHHH-cCCcEE-EecCcccc
Q 000945 237 RAMVLCGLLK-KGKKIL-VLDNIWTS 260 (1212)
Q Consensus 237 ~~~~l~~~L~-~~kr~L-VLDDVw~~ 260 (1212)
..-.+-++++ .||.+| ++||+-.-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHHH
Confidence 1222333333 369999 99998544
No 314
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.90 E-value=0.29 Score=49.73 Aligned_cols=37 Identities=32% Similarity=0.286 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV 208 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v 208 (1212)
.++|-|+|..|+|||||++.+..+.. ..|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 46889999999999999999999766 67855444433
No 315
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.85 E-value=0.21 Score=49.89 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...|.|+|+.|.||||+|+.+-+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34699999999999999999998653
No 316
>PRK09087 hypothetical protein; Validated
Probab=90.81 E-value=0.19 Score=52.77 Aligned_cols=27 Identities=37% Similarity=0.345 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+.|||..|+|||||++.+.+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 346789999999999999999887643
No 317
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.80 E-value=0.15 Score=53.77 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-|.|+|++|+|||||+..+..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4689999999999999999988644
No 318
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.78 E-value=0.21 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|-+.|+.|.||||+|+.+-...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999997764
No 319
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=90.76 E-value=0.16 Score=55.65 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.|+|+|-||+||||+|..+---..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA 25 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence 4799999999999999988766443
No 320
>PRK06620 hypothetical protein; Validated
Probab=90.72 E-value=0.18 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+-|||..|+|||+||+++.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999987754
No 321
>PRK13946 shikimate kinase; Provisional
Probab=90.71 E-value=0.21 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|.++||.|.||||+|+.+-+...
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998764
No 322
>PLN02796 D-glycerate 3-kinase
Probab=90.68 E-value=0.2 Score=55.05 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..-+|||.|..|.||||||+.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 323
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=90.66 E-value=0.19 Score=54.12 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=27.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV 208 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v 208 (1212)
++|+|+|.+|.|||||+..+-...+ +.. .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~--~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLS--GRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hCC-CEEEEEE
Confidence 5899999999999999999999876 333 3555533
No 324
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.62 E-value=9.3 Score=48.90 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhC-------CC--CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS-------NP--NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~-------~~--~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|+|.+..++.+.+.+. +. ...++-++|..|+|||+||+.+-+..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 47788988888877764 11 24456689999999999999987643
No 325
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=90.59 E-value=1 Score=51.57 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=50.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCc-----ccC-CChh------H
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLY-----ICE-GSES------E 236 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~-----~~~-~~~~------~ 236 (1212)
.-..++|+|..|+|||||++.+..... ....++|..--+.-++..+....+...... ... .... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345799999999999999998876443 122333433223445555555554443211 111 1111 1
Q ss_pred HHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 237 RAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 237 ~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
.+..+-++++ .|+.+| ++||+-.-.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~A 267 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHHH
Confidence 1222344443 369999 999986553
No 326
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.53 E-value=0.18 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|+++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 327
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.50 E-value=1.3 Score=51.07 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.2
Q ss_pred ceEEEEEecCCCchhHHH-HHHHHHhhh-----cCCCCEEEEEEecCCCCHHHHHHHHHHHhc-Cccc-----CCCh--h
Q 000945 170 VNVIGLCGLGGIGKTTLA-KIVFYQAKK-----LKLCDEVVFVEVSQTPDVKRIQGDIADQLG-LYIC-----EGSE--S 235 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA-~~vyn~~~v-----~~~F~~~~wv~vs~~~~~~~l~~~il~~l~-~~~~-----~~~~--~ 235 (1212)
-..++|.|-.|+|||||| -.|-|...+ .++-+.++++-+.+..+...=..+.+++-+ .+.. ..++ .
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 446899999999999997 566666533 135578899999887764443444444433 1100 0111 1
Q ss_pred H------HHHHHHHHHH-cCCcEE-EecCcccccc
Q 000945 236 E------RAMVLCGLLK-KGKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 236 ~------~~~~l~~~L~-~~kr~L-VLDDVw~~~~ 262 (1212)
. ....+-+.++ +||.+| |+||+-+-.+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~ 303 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAV 303 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHH
Confidence 0 1222334442 369999 9999876543
No 328
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=0.027 Score=57.78 Aligned_cols=82 Identities=26% Similarity=0.236 Sum_probs=57.8
Q ss_pred ccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 853 LTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 853 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
+.+.+.|+.++|. |..| .....++.||.|.++-| ++.++.+ +..++.|++|+|.. +.+.++-+...+++++
T Consensus 18 l~~vkKLNcwg~~-L~DI-----sic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI-----SICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCC-ccHH-----HHHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCc
Confidence 4566777777774 4444 23456788888888863 4555532 46778888888877 4677776667778888
Q ss_pred cccEEEecCcc
Q 000945 933 CLTKLRIDGCR 943 (1212)
Q Consensus 933 ~L~~L~i~~c~ 943 (1212)
+|+.|.|..++
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 89988888776
No 329
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.45 E-value=0.94 Score=50.18 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 227 (1212)
.-.++-|+|..|.||||||..+.-...... .-..++|+.....|+..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 467899999999999999998765332211 1236799988888888875 334555443
No 330
>PRK06761 hypothetical protein; Provisional
Probab=90.44 E-value=0.3 Score=52.43 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=26.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEE
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVV 204 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~ 204 (1212)
.+|.|.|..|.||||+|+.+++... ...++..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS-QNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-cCceEEEE
Confidence 5799999999999999999999865 23444444
No 331
>PRK13768 GTPase; Provisional
Probab=90.43 E-value=0.2 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|+|.||+||||++..+..-..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5789999999999999988877654
No 332
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.39 E-value=1.1 Score=51.86 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCcccccchHHHHHHHHHHhC---C---------CCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 146 EGYEAFESRKSILNDALDALS---N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~---~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.....+-|.+....++.+++. . ..-+=|-++|+.|.|||.||+++-+...|
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 345667888888888877765 1 12334668999999999999999998875
No 333
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.36 E-value=0.19 Score=44.67 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++.|.|.+|+||||+|..+-....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999888765
No 334
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.35 E-value=0.15 Score=30.78 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=8.3
Q ss_pred ccEEEEecCCCcccccCC
Q 000945 884 LESLEVWWCENLINLVPS 901 (1212)
Q Consensus 884 L~~L~l~~c~~l~~lp~~ 901 (1212)
|++|++++| .++.+|++
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555555 44445443
No 335
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.34 E-value=0.23 Score=47.62 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||.+.+.....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 35899999999999999999988654
No 336
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=90.33 E-value=0.57 Score=53.85 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhcCcccCC
Q 000945 154 RKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT-PDVKRIQGDIADQLGLYICEG 232 (1212)
Q Consensus 154 r~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~ 232 (1212)
|..-..++++.+..... ++.|.|+=++||||+++.+-.... .. .+++..-+. ++-..+ .+.+...
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~-~~----~iy~~~~d~~~~~~~l-~d~~~~~------- 87 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL-EE----IIYINFDDLRLDRIEL-LDLLRAY------- 87 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC-cc----eEEEEecchhcchhhH-HHHHHHH-------
Confidence 33445556665554333 999999999999999965554332 11 444432221 111111 1111111
Q ss_pred ChhHHHHHHHHHHHcCCcEEEecCccccccccccceeeeccCC
Q 000945 233 SESERAMVLCGLLKKGKKILVLDNIWTSLDLDKKLEILSLVDS 275 (1212)
Q Consensus 233 ~~~~~~~~l~~~L~~~kr~LVLDDVw~~~~~~~~Lr~L~ls~~ 275 (1212)
..+... +|.|++||.|.....|+..+++|--.++
T Consensus 88 ------~~~~~~---~~~yifLDEIq~v~~W~~~lk~l~d~~~ 121 (398)
T COG1373 88 ------IELKER---EKSYIFLDEIQNVPDWERALKYLYDRGN 121 (398)
T ss_pred ------HHhhcc---CCceEEEecccCchhHHHHHHHHHcccc
Confidence 011111 2456699999999999997777755554
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.33 E-value=1.3 Score=46.76 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCchhHHH-HHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLA-KIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDI 221 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA-~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~i 221 (1212)
.-.++.|.|..|.||||+| |.+|+-.+ .. ..+++++ -+-+...+.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEe--CCCCHHHHHHHH
Confidence 3459999999999999997 66666433 22 3445555 333455666655
No 338
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=90.31 E-value=0.23 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+++|+|..|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999765
No 339
>COG4240 Predicted kinase [General function prediction only]
Probab=90.31 E-value=1.4 Score=44.20 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcC-----cccCCChhHHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGL-----YICEGSESERAMVLC 242 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~-----~~~~~~~~~~~~~l~ 242 (1212)
++--++||.|.-|.||||+|-.||+....+.. +..+-....+-|-...-+-.++++... ...+..+..+...+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 35678999999999999999999998875443 455555444444444444455555411 122334444444455
Q ss_pred HHHHcC
Q 000945 243 GLLKKG 248 (1212)
Q Consensus 243 ~~L~~~ 248 (1212)
+.+.++
T Consensus 127 nai~~g 132 (300)
T COG4240 127 NAIARG 132 (300)
T ss_pred HHHhcC
Confidence 555543
No 340
>PLN02348 phosphoribulokinase
Probab=90.30 E-value=0.26 Score=54.94 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+..-+|||.|..|.||||+|+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999998764
No 341
>PRK14530 adenylate kinase; Provisional
Probab=90.22 E-value=0.24 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|+|+.|.||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
No 342
>PRK08149 ATP synthase SpaL; Validated
Probab=90.21 E-value=0.89 Score=51.94 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhcCcc-----cCCC--hh-----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT-PDVKRIQGDIADQLGLYI-----CEGS--ES----- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~-----~~~~--~~----- 235 (1212)
.-..++|+|..|.|||||++.+.+... -+..+...|... -++..+..+.+....... ...+ ..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 445789999999999999999987543 345555556544 356666666665433210 1111 11
Q ss_pred -HHHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 236 -ERAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 236 -~~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
..+..+-++++ .||.+| ++||+-.-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~A 254 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRYA 254 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHHH
Confidence 12333444443 369999 999987554
No 343
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=90.14 E-value=0.8 Score=55.66 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=50.5
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 227 (1212)
...+.|+++.++.+...+... .. +-++|+.|+||||+|+.+.+... .+.|...+++..+. -+...+.+.+...++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~-~~-~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK-RN-VLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNPE-DPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC-CC-EEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCCC-CCchHHHHHHHHhhch
Confidence 345778888777666666544 34 44999999999999999998654 22344444333332 3455667777776654
Q ss_pred c
Q 000945 228 Y 228 (1212)
Q Consensus 228 ~ 228 (1212)
+
T Consensus 93 ~ 93 (608)
T TIGR00764 93 E 93 (608)
T ss_pred H
Confidence 4
No 344
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.14 E-value=0.27 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998864
No 345
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.12 E-value=0.31 Score=47.73 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=23.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|+|+|..|.|||||+..+.....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998765
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.11 E-value=0.79 Score=51.63 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHHHhCCC--------------CceEEEEEecCCCchhHHHHHHHHHhhhcC-CCCEEEEEEecC-CCC
Q 000945 150 AFESRKSILNDALDALSNP--------------NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK-LCDEVVFVEVSQ-TPD 213 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~~--------------~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~-~F~~~~wv~vs~-~~~ 213 (1212)
.|+|.++.++.+.-.+... ..+-|-++|..|+||||+|+.+-....+.- +++..-|..+.. ..+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3678888777775444321 135688999999999999999988764210 112222222211 125
Q ss_pred HHHHHHHHHHH
Q 000945 214 VKRIQGDIADQ 224 (1212)
Q Consensus 214 ~~~l~~~il~~ 224 (1212)
+..+.+.+.+.
T Consensus 93 vE~i~r~l~e~ 103 (441)
T TIGR00390 93 VESMVRDLTDA 103 (441)
T ss_pred HHHHHHHHHHH
Confidence 66777766654
No 347
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=90.06 E-value=0.43 Score=48.21 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=31.3
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHH
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
...|.|.+..+..+.-.... ..=|-|+|..|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 45678888777766655543 46788999999999999999875
No 348
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.05 E-value=0.41 Score=54.73 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=38.7
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|.+..+++|.+.+. . ...+-|-++|..|.||||+|+++.+...
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 34455667888888877766542 1 1345688999999999999999998754
No 349
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.05 E-value=0.2 Score=48.75 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
||.|+|..|.||||+|+.+-....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 350
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.05 E-value=0.25 Score=48.68 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=63.2
Q ss_pred ccccceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchh
Q 000945 263 LDKKLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQ 342 (1212)
Q Consensus 263 ~~~~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~ 342 (1212)
|.+....+||++|.+..++ .+..+..|.+|.+++| .|..|.+.+-..+.+|..|.+.+|.+... ..+.
T Consensus 40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l----------~dl~ 107 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQEL----------GDLD 107 (233)
T ss_pred cccccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhh----------hhcc
Confidence 3335667888888887765 3667888999999999 88888888555667799999999887511 1245
Q ss_pred hhhcCCCCCcceeeecccc
Q 000945 343 ELKLLSHLTTLEIQICDAM 361 (1212)
Q Consensus 343 ~L~~l~~L~~L~l~~~~~~ 361 (1212)
.|..++.|++|.+-.|...
T Consensus 108 pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred hhccCCccceeeecCCchh
Confidence 5666677777777666544
No 351
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.99 E-value=1.1 Score=56.34 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhC-------CC--CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS-------NP--NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~-------~~--~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++|.+..++.+.+.+. +. ...++-++|+.|+|||+||+.+....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 46788888888777665 11 24467899999999999999998855
No 352
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.98 E-value=0.73 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|.|.|+-|+||||+|+.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
No 353
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=89.97 E-value=0.51 Score=57.15 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=58.0
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQL 225 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l 225 (1212)
.....+.|.++.++.+...+... ..+-|+|..|.||||+|+.+..... ..+|+...|...+. -+...+.+.++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np~-~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNPE-DPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCCC-cchHHHHHHHHHhc
Confidence 34556889888888777766644 3688999999999999999887643 34567788876643 46677778887766
Q ss_pred cCc
Q 000945 226 GLY 228 (1212)
Q Consensus 226 ~~~ 228 (1212)
+..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 543
No 354
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.97 E-value=0.34 Score=44.58 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|.+.|.||+||||+|..+.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLA 24 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988765
No 355
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=89.93 E-value=1.7 Score=49.80 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC--CCC---------EEEEEEecCCCCHHHHHHHHHHHhc-Cccc----CC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK--LCD---------EVVFVEVSQTPDVKRIQGDIADQLG-LYIC----EG 232 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~--~F~---------~~~wv~vs~~~~~~~l~~~il~~l~-~~~~----~~ 232 (1212)
.-..+||.|-.|+|||||+..|-+.....+ -.| .++++-+.+...+.....+.+..-+ .+.. ..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 345689999999999999999888764210 123 6777788888777777777676554 2210 01
Q ss_pred Chh---------HHHHHHHHHHH--cCCcEE-EecCccccccccccceeeec
Q 000945 233 SES---------ERAMVLCGLLK--KGKKIL-VLDNIWTSLDLDKKLEILSL 272 (1212)
Q Consensus 233 ~~~---------~~~~~l~~~L~--~~kr~L-VLDDVw~~~~~~~~Lr~L~l 272 (1212)
+++ -.+..+-++++ +||.+| ++||+-.-.+ .+|.+.+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~---A~REisl 268 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYAD---ALREVSA 268 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHH---HHHHHHH
Confidence 111 12334666666 479999 9999865432 4454444
No 356
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.92 E-value=0.19 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.|+|..|.||||+|+.+-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 357
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=89.91 E-value=0.24 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~ 193 (1212)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 358
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=89.91 E-value=0.24 Score=53.30 Aligned_cols=25 Identities=44% Similarity=0.418 Sum_probs=19.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|-|.|.+|.||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999766
No 359
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=89.91 E-value=0.22 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|+|+|=||+||||+|-.+---.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 589999999999999997765533
No 360
>PRK13236 nitrogenase reductase; Reviewed
Probab=89.84 E-value=0.26 Score=54.38 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.4
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHH
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
+++.+||.+.|=|||||||+|-.+--
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 56789999999999999999876544
No 361
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.83 E-value=0.24 Score=51.78 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEE---ecC--CCCHHHHHHHHHHHhcCcc-------cCCChhH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVE---VSQ--TPDVKRIQGDIADQLGLYI-------CEGSESE 236 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~---vs~--~~~~~~l~~~il~~l~~~~-------~~~~~~~ 236 (1212)
.-.++||||-.|.||||+|+.|-.=.. -. ...++.. +.. .....+-..++++.++... .+.+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~--pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE--PT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC--CC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456899999999999999999987543 12 2233321 111 1223344455666665432 1223333
Q ss_pred HHHH-HHHHHHcCCcEEEecCcccc
Q 000945 237 RAMV-LCGLLKKGKKILVLDNIWTS 260 (1212)
Q Consensus 237 ~~~~-l~~~L~~~kr~LVLDDVw~~ 260 (1212)
++.. |.+.|.-+-+++|.|.--..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhh
Confidence 3332 33334432455588865433
No 362
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.81 E-value=0.21 Score=48.40 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|++.|.+|+||||++..+.....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~ 24 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999987654
No 363
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.80 E-value=0.28 Score=46.51 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=35.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcc
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYI 229 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 229 (1212)
+|.|-|.+|.||||+|+.+-++...+ +| +--.+.++|+++.+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~v----saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------LV----SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------ee----eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987633 12 23467788888887753
No 364
>PRK13948 shikimate kinase; Provisional
Probab=89.76 E-value=0.29 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....|.++||.|.||||+++.+-+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999988654
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.75 E-value=0.54 Score=50.85 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=29.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVK 215 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~ 215 (1212)
..++|.++|.+|+||||.+..+..... ..-..+++++ .+.|...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~-~D~~r~~ 114 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAA-GDTFRAA 114 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEe-CCCCCHH
Confidence 568999999999999999888876654 2222344443 3345443
No 366
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.73 E-value=0.79 Score=49.51 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHH
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRI 217 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l 217 (1212)
.+.++.++.. +. -|-++|..|+||||+|+.+..... ....+++.+.+.+...+
T Consensus 11 ~~~~l~~l~~-g~-~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKS-GY-PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhc-CC-eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHH
Confidence 4455555543 23 345899999999999999987332 22345566665555444
No 367
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.68 E-value=1 Score=51.03 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=48.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCC--ChhHHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEG--SESERAMVLCGLLK 246 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~--~~~~~~~~l~~~L~ 246 (1212)
.-.++-|.|.+|+|||||+..+..... ..-..++|+...+. ...+. .-++.++...... ........+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 356899999999999999998877654 22345667655432 33322 2234454332210 01112334444444
Q ss_pred c-CCcEEEecCcccc
Q 000945 247 K-GKKILVLDNIWTS 260 (1212)
Q Consensus 247 ~-~kr~LVLDDVw~~ 260 (1212)
. +-+++|+|.+-..
T Consensus 156 ~~~~~lVVIDSIq~l 170 (372)
T cd01121 156 ELKPDLVIIDSIQTV 170 (372)
T ss_pred hcCCcEEEEcchHHh
Confidence 3 2455599987543
No 368
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.68 E-value=0.24 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|+|.|-||+||||++..+-.-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 479999999999999987765533
No 369
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=89.67 E-value=0.27 Score=56.21 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..-++.|+|+|..|.||||||+++.+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999998753
No 370
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=89.65 E-value=0.29 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEecCCCchhHHHHHHHHHhhh
Q 000945 175 LCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 175 I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
|+||+|.||||+++.+++....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999998763
No 371
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.62 E-value=0.48 Score=54.37 Aligned_cols=49 Identities=29% Similarity=0.520 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.+.+.+.++... .+-++|..|+||||+|+.+-+..
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566789999999999998765554 78899999999999999996654
No 372
>PLN02318 phosphoribulokinase/uridine kinase
Probab=89.60 E-value=0.35 Score=56.59 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.+.+.+|||.|..|.||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 456889999999999999999999864
No 373
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.58 E-value=0.24 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|+|+|=||+||||+|-.+---.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 589999999999999998766533
No 374
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.58 E-value=0.27 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.+|+|+|..|+|||||.+.|-.=
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999998763
No 375
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=89.55 E-value=0.67 Score=48.41 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=28.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD 213 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~ 213 (1212)
+.|+|+|-|||||+|.|+.+---.. ..-..++-|=+..+.|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala--~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALA--EMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHH--hccceeeEecccCCCc
Confidence 4699999999999999999877655 2234555554444333
No 376
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.54 E-value=1.3 Score=43.82 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=51.2
Q ss_pred EEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHc--CCc
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKK--GKK 250 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~--~kr 250 (1212)
+-|.|-.|.||||+|...-.. ....++++.-.+.+|.. +++.|..............+....+.+.+.+ +..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 568999999999999987543 23567788777778763 6666665444443344444444556666643 133
Q ss_pred EEEecCcc
Q 000945 251 ILVLDNIW 258 (1212)
Q Consensus 251 ~LVLDDVw 258 (1212)
++++|.+-
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 45889764
No 377
>PRK04182 cytidylate kinase; Provisional
Probab=89.52 E-value=0.3 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|.|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988654
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.46 E-value=2.2 Score=45.38 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=33.3
Q ss_pred CceEEEEEecCCCchhHHHHH-HHHHhhhcCCCCEEEEEEecCCCCHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKI-VFYQAKKLKLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~-vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
.-+++-|.|.+|.||||+|.. +|+-.+ .-+.++|++..+ +...+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHH
Confidence 467899999999999999976 566543 246677877654 44445444
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.46 E-value=0.3 Score=48.89 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|-|.|.+|.||||+|+.+-+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999843
No 380
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=89.45 E-value=0.39 Score=53.06 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 158 LNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 158 ~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+++-+. .....+|+|.|.+|.|||||+..+.....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555554 35688999999999999999999887654
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.44 E-value=0.26 Score=51.81 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||.+.++.-.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999998554
No 382
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.44 E-value=0.26 Score=27.49 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=9.6
Q ss_pred CCccEEEeccCCCccccC
Q 000945 989 PSLEDLFVIECPKMKIFS 1006 (1212)
Q Consensus 989 ~sL~~L~i~~C~~l~~lp 1006 (1212)
++|+.|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888886 66665
No 383
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.40 E-value=0.44 Score=52.88 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=36.9
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
....|+|.++.++.++-.+.+.+..-+-+.|..|+||||+|+.+-.-
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 35568899988887776555445556889999999999999998664
No 384
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.36 E-value=1.2 Score=41.98 Aligned_cols=106 Identities=21% Similarity=0.186 Sum_probs=38.2
Q ss_pred hHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc
Q 000945 818 IGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN 897 (1212)
Q Consensus 818 ~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 897 (1212)
...|.++++|+.+.+. +.+..+.. ..+..+++|+.+.+.+ .+..+. ...+.++++|+.+.+.+ .+..
T Consensus 5 ~~~F~~~~~l~~i~~~-~~~~~I~~-----~~F~~~~~l~~i~~~~--~~~~i~---~~~F~~~~~l~~i~~~~--~~~~ 71 (129)
T PF13306_consen 5 NNAFYNCSNLESITFP-NTIKKIGE-----NAFSNCTSLKSINFPN--NLTSIG---DNAFSNCKSLESITFPN--NLKS 71 (129)
T ss_dssp TTTTTT-TT--EEEET-ST--EE-T-----TTTTT-TT-SEEEESS--TTSCE----TTTTTT-TT-EEEEETS--TT-E
T ss_pred HHHHhCCCCCCEEEEC-CCeeEeCh-----hhcccccccccccccc--cccccc---eeeeecccccccccccc--cccc
Confidence 3344555555555543 22333321 1223344555555544 233332 12344555566666643 3333
Q ss_pred ccCCc-cccCCccEEeeccccCcccccchhhhcccccccEEEec
Q 000945 898 LVPSS-ASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRID 940 (1212)
Q Consensus 898 lp~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 940 (1212)
++... ..+++|+.+.+.. ++..++... +.+. .|+.+.+.
T Consensus 72 i~~~~F~~~~~l~~i~~~~--~~~~i~~~~-f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPS--NITEIGSSS-FSNC-NLKEINIP 111 (129)
T ss_dssp E-TTTTTT-TTECEEEETT--T-BEEHTTT-TTT--T--EEE-T
T ss_pred cccccccccccccccccCc--cccEEchhh-hcCC-CceEEEEC
Confidence 43322 2356666666643 344443322 2333 55555543
No 385
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.36 E-value=0.41 Score=46.49 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+++.+++.+ +++.++|..|+|||||...+..+.
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777754 789999999999999999999865
No 386
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.28 E-value=0.26 Score=49.73 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=19.5
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn 192 (1212)
+|+|.|+.|.||||+|+.+-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 387
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.25 E-value=0.27 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|+|.|-||+||||+|-.+-.-..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La 26 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALA 26 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 5789999999999999988766543
No 388
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.25 E-value=1 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
||||.|-.|.||||+|+.+....+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999887654
No 389
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.24 E-value=1.6 Score=52.42 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=38.6
Q ss_pred CcccccchHHHHHHHHHHhCCCC-ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPN-VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~-~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....|+|.+..++.|.+++..+. ...+-++|..|+||||+|+.+-+...
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 45567888888888888777654 35677899999999999999887654
No 390
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=6 Score=48.57 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHhC-------C--CCceEEEEEecCCCchhHHHHHHHH
Q 000945 151 FESRKSILNDALDALS-------N--PNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~-------~--~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
|+|.++.++.+.+.+. + ..+.+.-.+|+-|||||-||+.+-.
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 6888999988888775 1 2456677899999999988887766
No 391
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=89.14 E-value=0.28 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|.|+|+.|.||||+|+.+-....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988653
No 392
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.05 E-value=0.27 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|||.|..|.||||+++.+..-..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999987653
No 393
>PRK06936 type III secretion system ATPase; Provisional
Probab=89.05 E-value=1.4 Score=50.41 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=54.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc----cCCChh---H----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI----CEGSES---E---- 236 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~----~~~~~~---~---- 236 (1212)
.-..++|+|..|+|||||.+.+.+... -+.++++-+.+..+ +..+....+..-+.+. ...+++ .
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 445799999999999999999998654 36778887877654 4444444333211110 001111 1
Q ss_pred --HHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 237 --RAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 237 --~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
.+..+-++++ .||++| ++||+-.-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~A 265 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRFA 265 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 1223444443 369999 999986553
No 394
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.00 E-value=2.4 Score=44.99 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=33.8
Q ss_pred CceEEEEEecCCCchhHHHHHH-HHHhhhcCCCCEEEEEEecCCCCHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIV-FYQAKKLKLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~v-yn~~~v~~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
.-+++.|+|..|.||||+|..+ |+-.+ . =..++|++..+.+ ..+.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~-g~~~~y~~~e~~~--~~~~~~ 71 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--Q-GKKVYVITTENTS--KSYLKQ 71 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--C-CCEEEEEEcCCCH--HHHHHH
Confidence 4678999999999999999997 55443 2 2567888776543 444444
No 395
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=88.99 E-value=0.3 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.8
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~ 193 (1212)
|+|.|..|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 396
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.95 E-value=0.75 Score=50.54 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=28.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRI 217 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l 217 (1212)
.++|-+.|.|||||||+|-+.-=... +......-|.+-.-.++..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhh
Confidence 46888999999999999988333333 22344455544444444443
No 397
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.93 E-value=0.33 Score=48.64 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=27.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.|+.|+|..|.|||||.|.+..=+.+. ...+|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i 61 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV 61 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence 45689999999999999999987644432 456666
No 398
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=88.91 E-value=0.49 Score=56.68 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=38.3
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|.+..++.+...+......-|-|+|..|+||||+|+.+++..+
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456889988888888776644444557899999999999999998643
No 399
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.87 E-value=0.56 Score=53.69 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=39.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.+.+++..+.. ..+-++|..|+||||+|+.+....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455678999999999998876554 356789999999999999988764
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.79 E-value=3 Score=50.71 Aligned_cols=100 Identities=21% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhcCcccC----
Q 000945 158 LNDALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQ-TPDVKRIQGDIADQLGLYICE---- 231 (1212)
Q Consensus 158 ~~~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~---- 231 (1212)
...+++.|.. .+.+.+-|..+.|.|||||+-.-.... ..=..+.|....+ +-|..++.+.+++.++.-...
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3567777764 489999999999999999998876522 2235689998864 567889999998888643221
Q ss_pred ----------CChhHHHHHHHHHHHc-CCcEE-EecCcccc
Q 000945 232 ----------GSESERAMVLCGLLKK-GKKIL-VLDNIWTS 260 (1212)
Q Consensus 232 ----------~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~ 260 (1212)
.+.....+.+...|.+ .+... ||||.--.
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli 141 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLI 141 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 1222345555555543 24545 99996544
No 401
>COG3899 Predicted ATPase [General function prediction only]
Probab=88.78 E-value=1.3 Score=56.37 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=39.8
Q ss_pred ccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++||+.+.+.|...+. .+.-.|+.+.|-.|||||+|++.|.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 6899999999988775 45677999999999999999999999766
No 402
>PRK12678 transcription termination factor Rho; Provisional
Probab=88.73 E-value=1.9 Score=50.27 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=53.4
Q ss_pred HHHHhC-CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE-EecCCCC-HHHHHHHHHHHhcCcc----cCCC
Q 000945 161 ALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV-EVSQTPD-VKRIQGDIADQLGLYI----CEGS 233 (1212)
Q Consensus 161 l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv-~vs~~~~-~~~l~~~il~~l~~~~----~~~~ 233 (1212)
+++++. -..-....|+|..|+|||||++.|-|.... .+=++.++| -|.+... +..+.+. +..+. ....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rs----VkgeVVasT~D~p 480 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRS----VKGEVIASTFDRP 480 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHh----ccceEEEECCCCC
Confidence 444444 123456789999999999999999997652 344555554 4444433 3333333 31111 0011
Q ss_pred ------hhHHHHHHHHHH-HcCCcEE-EecCcccc
Q 000945 234 ------ESERAMVLCGLL-KKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 234 ------~~~~~~~l~~~L-~~~kr~L-VLDDVw~~ 260 (1212)
.-...-.+-+++ ..|+.+| ++|++-..
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 112233344555 3479999 99997644
No 403
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=88.71 E-value=0.6 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
--||+|+|..|.|||||+..+....+
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999876
No 404
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=0.65 Score=50.21 Aligned_cols=54 Identities=26% Similarity=0.240 Sum_probs=41.2
Q ss_pred cccCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 142 LMCSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 142 ~~~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|......|-|-++++++|-+... + +.-+=|-.||++|.|||-||++|-|+..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3456667778888988888776553 1 2344467899999999999999999766
No 405
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.66 E-value=0.38 Score=48.23 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+|+|.|+.|.||||+|+.+-+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999997754
No 406
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=88.66 E-value=0.51 Score=48.28 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCCcccccchHHHHHH---HHHHhCCC------CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 145 SEGYEAFESRKSILND---ALDALSNP------NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~---l~~~L~~~------~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
......++|.++.+.+ |++.|.+. ..+-|-.+|..|.|||.+|+++-|..++
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 4455667888877644 77777743 4667889999999999999999998774
No 407
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.64 E-value=0.35 Score=48.86 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 408
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.64 E-value=0.74 Score=51.75 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=41.6
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+...+.+...+..+.+ ..+-|+|.-|+||||+|+.+-...-
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 44566789999999999998876654 3588999999999999998887653
No 409
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=88.63 E-value=2.4 Score=48.74 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=61.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCcc-------cCCChhH----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLYI-------CEGSESE---- 236 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~~---- 236 (1212)
.-..++|.|-.|+|||||+..+-..... ++=+.++++-|-+.-+ +..+.+++...=.... .......
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3456899999999999999998776542 2224777777766543 5666666654211110 0111111
Q ss_pred --HHHHHHHHHHc--CCcEE-EecCccccccccccceeeecc
Q 000945 237 --RAMVLCGLLKK--GKKIL-VLDNIWTSLDLDKKLEILSLV 273 (1212)
Q Consensus 237 --~~~~l~~~L~~--~kr~L-VLDDVw~~~~~~~~Lr~L~ls 273 (1212)
.+..+-++++. |+.+| |+||+-+-.+ .+|.+.+.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~---A~REisl~ 259 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ---AGSEVSAL 259 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHH---HHHHHHHh
Confidence 23445666643 69999 9999875543 45555443
No 410
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=88.61 E-value=0.28 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEecCCCchhHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998775
No 411
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.60 E-value=0.32 Score=27.19 Aligned_cols=10 Identities=50% Similarity=0.477 Sum_probs=4.2
Q ss_pred CccEEeeccc
Q 000945 907 NLTTLELWYC 916 (1212)
Q Consensus 907 ~L~~L~l~~c 916 (1212)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 412
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.58 E-value=0.52 Score=50.96 Aligned_cols=43 Identities=30% Similarity=0.384 Sum_probs=37.6
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHH
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKI 189 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~ 189 (1212)
..-||-+|..+..--+++|.++++..|.+.|.+|.|||-||-+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHH
Confidence 3456778888888889999999999999999999999988765
No 413
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=88.57 E-value=0.34 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.-.+++|+|..|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999964
No 414
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=88.56 E-value=0.89 Score=47.39 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=30.6
Q ss_pred HHHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 157 ILNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 157 ~~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
+..++++.+. ..+..+|||-|.+|.||+||.-.+-...+-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 4556777665 457889999999999999999998877663
No 415
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.52 E-value=0.35 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998543
No 416
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=88.51 E-value=1.3 Score=50.79 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=57.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhcCc----c-cCCC--hh-----
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP-DVKRIQGDIADQLGLY----I-CEGS--ES----- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~----~-~~~~--~~----- 235 (1212)
.-..++|+|..|.|||||++.+.+... .+..+++.+.+.. .+.....+....=... . ...+ ..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999987543 5666777676544 3445555544311010 0 0011 11
Q ss_pred -HHHHHHHHHHH-cCCcEE-EecCccccccccccceeeec
Q 000945 236 -ERAMVLCGLLK-KGKKIL-VLDNIWTSLDLDKKLEILSL 272 (1212)
Q Consensus 236 -~~~~~l~~~L~-~~kr~L-VLDDVw~~~~~~~~Lr~L~l 272 (1212)
..+..+-++++ +||++| ++||+-.-.+ .+|...+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~---A~REisl 266 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYAR---AAREIAL 266 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHHHH---HHHHHHH
Confidence 11233445553 368999 9999875533 4444444
No 417
>PTZ00035 Rad51 protein; Provisional
Probab=88.50 E-value=2.2 Score=47.74 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=40.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhc---C-CCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKL---K-LCDEVVFVEVSQTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~---~-~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 227 (1212)
.-.++-|+|..|.|||||+..+.-..... . .=..++||.....|+..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 46789999999999999998876443311 0 1135669988888888874 444555544
No 418
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=88.48 E-value=0.83 Score=54.00 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCcccccchHHHHHHHHHHhCC-----CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEE
Q 000945 146 EGYEAFESRKSILNDALDALSN-----PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVE 207 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~-----~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~ 207 (1212)
.....+.-..+.++++-.||.+ ...+++-+.|+.|+||||.++.+.+... |+.+=|..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3344444455566777777762 2357899999999999999999998764 88888874
No 419
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.46 E-value=0.35 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 346899999999999999999998543
No 420
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=88.44 E-value=0.32 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
++|+|.|-||+||||+|-.+---.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999998765543
No 421
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.37 E-value=0.57 Score=56.50 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=41.7
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCce-EEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVN-VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~-vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+..++.+.+++..+.+. -+-++|..|+||||+|+.+-+...
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 345667899999999999988765544 578999999999999999987643
No 422
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=88.37 E-value=0.31 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
....|+|+|..|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999874
No 423
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=88.34 E-value=0.38 Score=53.86 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..-+|||.|..|.|||||++.+..-.+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999966544
No 424
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.28 E-value=0.62 Score=47.88 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=47.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec-CCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcCC
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS-QTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKGK 249 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~k 249 (1212)
.+|.|+|..|.||||+++.+..... .....+++..-. .++.... ...++.+.. -..+.......++..|..+-
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~---vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIEDPIEFVHES-KRSLINQRE---VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcCCccccccC-ccceeeecc---cCCCccCHHHHHHHHhcCCc
Confidence 4689999999999999999887654 334445443211 1111100 001111100 01112234555666676556
Q ss_pred cEEEecCcccccc
Q 000945 250 KILVLDNIWTSLD 262 (1212)
Q Consensus 250 r~LVLDDVw~~~~ 262 (1212)
.++++|.+-+.+.
T Consensus 76 d~ii~gEird~e~ 88 (198)
T cd01131 76 DVILVGEMRDLET 88 (198)
T ss_pred CEEEEcCCCCHHH
Confidence 6779999866554
No 425
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.27 E-value=0.35 Score=48.39 Aligned_cols=27 Identities=44% Similarity=0.517 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 446899999999999999999987543
No 426
>PRK14738 gmk guanylate kinase; Provisional
Probab=88.21 E-value=0.38 Score=49.79 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-..|.|+|..|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678889999999999999999764
No 427
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=88.12 E-value=0.35 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.1
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
++|+|+|=||+||||+|-.+--
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999999977655
No 428
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=88.10 E-value=0.38 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn 192 (1212)
+|+|.||.|.||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999999843
No 429
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=88.08 E-value=0.37 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|+|.|-||+||||+|..+-....
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La 27 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYS 27 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccC
Confidence 36899999999999999988776554
No 430
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=88.07 E-value=0.35 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|+|+|-||+||||+|-.+-.-..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La 25 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMA 25 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999988766443
No 431
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=88.06 E-value=2.1 Score=49.49 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCC--EEEEEEecCCCC-HHHHHHHHHHHhcCcc----cCCChh-------
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCD--EVVFVEVSQTPD-VKRIQGDIADQLGLYI----CEGSES------- 235 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~--~~~wv~vs~~~~-~~~l~~~il~~l~~~~----~~~~~~------- 235 (1212)
=..++|.|-.|+|||||+..|-+.......+. .++++-+-+..+ +..+...+...=..+. ...+++
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 34689999999999999999988765431121 566777766554 5566666653321110 001111
Q ss_pred --HHHHHHHHHHH--cCCcEE-EecCccccccccccceeeecc
Q 000945 236 --ERAMVLCGLLK--KGKKIL-VLDNIWTSLDLDKKLEILSLV 273 (1212)
Q Consensus 236 --~~~~~l~~~L~--~~kr~L-VLDDVw~~~~~~~~Lr~L~ls 273 (1212)
-.+..+-+.++ +|+++| ++||+-.-.+ .+|.+.+.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~---A~REIsl~ 260 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCE---ALREISAA 260 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHH---HHHHHHHh
Confidence 12344667776 479999 9999865433 45555443
No 432
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.06 E-value=0.39 Score=50.17 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=21.1
Q ss_pred ceEEEEEec-CCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGL-GGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~Gm-gGiGKTTLA~~vyn~~~ 195 (1212)
.++|+|+|. ||+||||+|-.+---..
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~ 27 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA 27 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 368999996 89999999988776544
No 433
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=88.05 E-value=1.7 Score=53.43 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=55.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC------CChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE------GSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~------~~~~~~~~~l~ 242 (1212)
.-+++=|+|..|+||||||-.+.-... ..=..++|+.....++.. .+++++.+... .+.++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 457888999999999999966444332 223667899888878743 66777765321 23444455555
Q ss_pred HHHHcCCcEE-EecCcccc
Q 000945 243 GLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~kr~L-VLDDVw~~ 260 (1212)
..++.++-=| |+|.+-..
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 5555434445 99987643
No 434
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.04 E-value=0.43 Score=52.42 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=25.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-...++|||..|.|||.+|++|+++..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999998763
No 435
>PRK08356 hypothetical protein; Provisional
Probab=88.03 E-value=0.38 Score=49.40 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=18.9
Q ss_pred eEEEEEecCCCchhHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIV 190 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~v 190 (1212)
.+|+|.|+.|.||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 436
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.02 E-value=0.62 Score=47.74 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 160 DALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 160 ~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
+.+..+...+-+++.|.|.+|.||||+++.+......
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3444443334568889999999999999999887663
No 437
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.00 E-value=0.39 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||++.+..-..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987543
No 438
>PRK14527 adenylate kinase; Provisional
Probab=87.99 E-value=0.44 Score=48.77 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|.|+|.+|.||||+|+.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987654
No 439
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=87.98 E-value=2.9 Score=44.61 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=51.7
Q ss_pred ceEEEEEecCCCchhHHH-HHHHHHhhhcCCCCEE-EEEEecCCCC-HHHHHHHHHHHhcCcc-------cCCChhH---
Q 000945 170 VNVIGLCGLGGIGKTTLA-KIVFYQAKKLKLCDEV-VFVEVSQTPD-VKRIQGDIADQLGLYI-------CEGSESE--- 236 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA-~~vyn~~~v~~~F~~~-~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~~--- 236 (1212)
=..++|+|-.|+|||||| +.+-+.. +-+.+ +++-+-+..+ +..+.+.+.+.=..+. ..+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356899999999999995 6676643 23555 6666766654 5566666654321110 0111111
Q ss_pred ---HHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 237 ---RAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 237 ---~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
.+-.+-+++. .||.+| |+||+-+-.
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 1233344443 369999 999987553
No 440
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=87.96 E-value=3.2 Score=35.49 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=44.1
Q ss_pred eEEEEEEEecchhHHHHHHhHhccCCCeeEEEE-----eCCCC--eEEEEEe-cCHHHHHHHHHhhcC
Q 000945 1117 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILF-----DPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1176 (1212)
Q Consensus 1117 ~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~-----d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1176 (1212)
.++||-|-..-+--.-..-+++++++||+.|.+ |.+.. ++||.|+ +|-.++.+++.+.|+
T Consensus 5 rRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 5 RRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred eEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 467777776655556667788999999987765 43333 7999999 999999999999887
No 441
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=87.93 E-value=1.1 Score=41.22 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHhC-------CCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 151 FESRKSILNDALDALS-------NPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~-------~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
++|..-..+.+++.+. ....-|++..|..|+|||.+|+.|-+.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 5666666666666665 235779999999999999877776665
No 442
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.91 E-value=0.42 Score=45.55 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.|+||||-.|.|||||...+-....
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhcccC
Confidence 35899999999999999999988655
No 443
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.91 E-value=0.26 Score=50.62 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=51.6
Q ss_pred cccceeeeecccccccccccc--CcccccccceEeEeecCCccccchHHHh-------------hcCccceeEEEcccee
Q 000945 774 TSKLEELKLSGKDIAMICQSQ--FPKHIFRNLKNLEVVNDESENFRIGFLE-------------RFHNLEKLELRWSSYK 838 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~p~~~l~-------------~l~~L~~L~l~c~~l~ 838 (1212)
+|.|+..++|.|.+..-.+.. ..+..-+.|.+|.+++|+++.+..+-++ +-|.|+......|.+.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 567777788877765443311 1123456788888888888877655443 2366777666666664
Q ss_pred EeccccchhhccccccccceEeeCCC
Q 000945 839 EIFSNEEIVEHAEMLTQVKSLKLWEL 864 (1212)
Q Consensus 839 ~~~~~~~~~~~~~~l~~L~~L~l~~c 864 (1212)
.-+ ...+...++....|+.+.|..+
T Consensus 171 ngs-~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 171 NGS-KELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred cCc-HHHHHHHHHhhcCceeEEeeec
Confidence 422 1111122333356777776653
No 444
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=87.87 E-value=0.39 Score=50.34 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+++|+|..|.|||||++.+..-.. .....+++
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~ 62 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRF 62 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 346899999999999999999998543 23445544
No 445
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=2.2 Score=45.38 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=30.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhc--CCCCEEEEEEe
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKL--KLCDEVVFVEV 208 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~--~~F~~~~wv~v 208 (1212)
.-++|-+.|++|.|||+|.+++..+..++ +.+....-+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 35678899999999999999999987654 44444455544
No 446
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=87.81 E-value=0.4 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987653
No 447
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=87.81 E-value=2.1 Score=49.53 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCc-----------cc-CCChh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLY-----------IC-EGSES 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~-----------~~-~~~~~ 235 (1212)
.-..++|.|-.|+|||||+..+-....- .+=+.++++-+-+.-+ +..+...++..-... .. ..+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 3456899999999999999987766321 1127888888877654 566666666511000 00 01111
Q ss_pred --------HHHHHHHHHHHc-CC-cEE-EecCccccccccccceeeec
Q 000945 236 --------ERAMVLCGLLKK-GK-KIL-VLDNIWTSLDLDKKLEILSL 272 (1212)
Q Consensus 236 --------~~~~~l~~~L~~-~k-r~L-VLDDVw~~~~~~~~Lr~L~l 272 (1212)
-.+..+-++++. ++ .+| ++||+-.-.+ .+|.+.+
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~---A~REIsl 283 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQ---AGSEVSA 283 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHH---HHHHHHH
Confidence 123446677754 34 999 9999875543 4454444
No 448
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.78 E-value=0.41 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
++|-+.|-||+||||+|-+.-=.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 57889999999999999665443
No 449
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=87.76 E-value=0.36 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.|+|+|-|||||+|.++.+-.-..
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla 26 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALA 26 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHH
Confidence 5799999999999999998776543
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.74 E-value=0.45 Score=48.18 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|.|+|..|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998753
No 451
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=87.71 E-value=0.66 Score=46.66 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 159 NDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 159 ~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
+.+.++........|.++|.+|+|||||...+...
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 34555554334567889999999999999998753
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=87.68 E-value=1.5 Score=50.30 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhcCc-------ccCCC------h
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT-PDVKRIQGDIADQLGLY-------ICEGS------E 234 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~-------~~~~~------~ 234 (1212)
.-.+++|+|..|.|||||++.|.+... .+..+...+... -++..+..+.+..-+.. ....+ .
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 456799999999999999999887543 244444444332 22333333433332211 01111 1
Q ss_pred hHHHHHHHHHHH-cCCcEE-EecCccccccccccceeeec
Q 000945 235 SERAMVLCGLLK-KGKKIL-VLDNIWTSLDLDKKLEILSL 272 (1212)
Q Consensus 235 ~~~~~~l~~~L~-~~kr~L-VLDDVw~~~~~~~~Lr~L~l 272 (1212)
.+.+..+-+... .|+.+| ++||+-.-.+ .+|.+.+
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~---A~REisl 266 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSLTRYAM---AQREIAL 266 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecchhHHHh---hhhHHHH
Confidence 112223333332 369999 9999865533 4444444
No 453
>PF13245 AAA_19: Part of AAA domain
Probab=87.67 E-value=1.3 Score=37.07 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=18.7
Q ss_pred ceEEEEEecCCCchh-HHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKT-TLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKT-TLA~~vyn~~ 194 (1212)
-+++.|.|.+|.||| |+++.+..-.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 457788999999999 5565555544
No 454
>PRK04328 hypothetical protein; Provisional
Probab=87.67 E-value=2.4 Score=45.38 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=29.8
Q ss_pred CceEEEEEecCCCchhHHHHH-HHHHhhhcCCCCEEEEEEecCC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKI-VFYQAKKLKLCDEVVFVEVSQT 211 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~-vyn~~~v~~~F~~~~wv~vs~~ 211 (1212)
.-+++-|.|.+|.||||||.. +|+-.+ .-+..+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCC
Confidence 457899999999999999987 555443 2466778876553
No 455
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.66 E-value=0.68 Score=55.54 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=40.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceE-EEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNV-IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~v-i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....|+|.+..++.|.+++..+.+.- +-++|..|+||||+|+.+-+...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345678899999999999988766554 67999999999999999887543
No 456
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=87.65 E-value=1.2 Score=50.64 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.+++.+....-..+-|.|.||.|||++.+++.+..+
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 44555555545567889999999999999999999876
No 457
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=87.62 E-value=2.1 Score=49.18 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=52.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhcCcc----cCCChh--------
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP-DVKRIQGDIADQLGLYI----CEGSES-------- 235 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~----~~~~~~-------- 235 (1212)
.-..++|+|..|.|||||++.+.+... .+..+...+.... ++..+...+...-.... ...+++
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 445799999999999999999876432 3455555554443 45555555554322210 011111
Q ss_pred -HHHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 236 -ERAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 236 -~~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
..+..+-++++ +|+.+| ++||+-.-.
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~A 271 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHHH
Confidence 11223444443 369999 999986553
No 458
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=87.61 E-value=0.38 Score=52.40 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=17.9
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn 192 (1212)
+|+|.|-||+||||+|-.+--
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999999977654
No 459
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=87.61 E-value=1.2 Score=47.46 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh-----hcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK-----KLKLCDEVVFVEVSQTPDVKRIQGDIAD 223 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~-----v~~~F~~~~wv~vs~~~~~~~l~~~il~ 223 (1212)
.+.+...+.... +..|+|.+|.||||++..+-.... ....-+.++-++...+-.+..+...+.+
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444443322 788999999999976665555441 1133444555555544444444444443
No 460
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=87.60 E-value=0.41 Score=49.16 Aligned_cols=23 Identities=43% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+|.|.|+-|.||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999863
No 461
>PRK15453 phosphoribulokinase; Provisional
Probab=87.54 E-value=0.55 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|+|.|-.|.||||+|+.+....
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988644
No 462
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.53 E-value=0.39 Score=43.32 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEe-cCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCG-LGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~G-mgGiGKTTLA~~vyn~~~ 195 (1212)
+|+++| -||+||||+|..+-.-..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~ 25 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALA 25 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 467777 789999999998776554
No 463
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=87.51 E-value=1.4 Score=42.69 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhc----------CCC---------CEEEEEEecCCCCHHHHHHHHHHHhcCcc
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKL----------KLC---------DEVVFVEVSQTPDVKRIQGDIADQLGLYI 229 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~----------~~F---------~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 229 (1212)
.-..++|.|-.|.||+|||+.+-.-.... -+| =.-+|-.-+..|+.+-=..+|++.--.-.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 34579999999999999999986532210 001 11123333445666655566665432223
Q ss_pred cCCChhHHHHHHHHHHHc
Q 000945 230 CEGSESERAMVLCGLLKK 247 (1212)
Q Consensus 230 ~~~~~~~~~~~l~~~L~~ 247 (1212)
...+..++-.++.+-|+.
T Consensus 118 T~~~~~~R~~~i~~TL~~ 135 (267)
T COG4167 118 TDLEPEQRRKQIFETLRM 135 (267)
T ss_pred ccCChHHHHHHHHHHHHH
Confidence 344555666667776664
No 464
>PLN02165 adenylate isopentenyltransferase
Probab=87.48 E-value=0.46 Score=52.00 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=25.0
Q ss_pred hCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 165 LSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 165 L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.+..-.+|.|+|+.|+||||||..+....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345556699999999999999999988764
No 465
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.48 E-value=0.39 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.++|.+|+|||||+..+.++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988754
No 466
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.46 E-value=0.43 Score=49.06 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||++.+.....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999998654
No 467
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=87.46 E-value=0.49 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.|+|.+|+|||||++.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999999988753
No 468
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=87.46 E-value=0.75 Score=47.05 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=24.4
Q ss_pred HHHHhC-CCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 161 ALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 161 l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
+++.+. ......|+|+|.+|+|||||++.+.++
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444443 223455699999999999999998864
No 469
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=87.45 E-value=0.4 Score=53.28 Aligned_cols=27 Identities=44% Similarity=0.614 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.--||||+|..|+||||+++.+-.-.+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ik 392 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIK 392 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhcccc
Confidence 456899999999999999999986544
No 470
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=87.40 E-value=0.38 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 471
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.36 E-value=0.46 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
. .+++|+|..|.|||||++.+..-..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 5 8999999999999999999987543
No 472
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=87.34 E-value=0.45 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEecCCCchhHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 473
>PRK01184 hypothetical protein; Provisional
Probab=87.34 E-value=0.46 Score=48.35 Aligned_cols=18 Identities=39% Similarity=0.811 Sum_probs=16.9
Q ss_pred eEEEEEecCCCchhHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAK 188 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~ 188 (1212)
.+|+|+|+.|.||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999998
No 474
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=87.31 E-value=0.5 Score=48.05 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|.|.|..|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998754
No 475
>PLN02924 thymidylate kinase
Probab=87.30 E-value=1.3 Score=46.08 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=34.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIAD 223 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~ 223 (1212)
-..|.|.|.-|.||||+|+.+.+....+ .+....+=............++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 3579999999999999999999988743 3454322222222334455555554
No 476
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=87.30 E-value=0.79 Score=50.84 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-..|.++||.|.||||+|+.+.....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999987653
No 477
>PLN02200 adenylate kinase family protein
Probab=87.29 E-value=0.57 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|.|.|+.|.||||+|+.+-...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997644
No 478
>PTZ00088 adenylate kinase 1; Provisional
Probab=87.29 E-value=0.48 Score=49.63 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.|.|++|+||||+|+.+-...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999997754
No 479
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=87.29 E-value=0.44 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
+++|+|..|.|||||+++++.-
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999853
No 480
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.28 E-value=0.44 Score=49.70 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=26.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+++|+|..|.|||||++.+..... .....+|+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~ 59 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLF 59 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 346899999999999999999998543 23455554
No 481
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=87.23 E-value=0.52 Score=48.99 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|+|.|..|.||||+|+.+..+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988654
No 482
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.21 E-value=0.46 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 483
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.15 E-value=0.75 Score=53.80 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|.+..++.+.+++..+.+ ..+-++|..|+||||+|+.+-+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456788999999999888876655 557789999999999999987754
No 484
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.15 E-value=0.46 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999854
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.15 E-value=0.46 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999997543
No 486
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=87.13 E-value=0.53 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|+|.|..|.|||||++.+.+...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999998654
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.11 E-value=0.5 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|+++|..|+||||++..+....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999988765
No 488
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=87.11 E-value=0.48 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999865
No 489
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=87.09 E-value=0.47 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999999854
No 490
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=87.08 E-value=0.46 Score=46.88 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~ 193 (1212)
|.|+|+.|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 491
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=87.08 E-value=0.46 Score=49.76 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+++|+|..|.|||||++.+..-.. .....+++
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~ 61 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRI 61 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 346899999999999999999987543 23555554
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=87.06 E-value=0.45 Score=49.74 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346899999999999999999987543
No 493
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=87.05 E-value=0.47 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999854
No 494
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.04 E-value=0.49 Score=48.13 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=40.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT-PDVKRIQGDIADQLGLYICEGSESERAMVLCGLL 245 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L 245 (1212)
.-.+|+|+|..|.|||||.+.+-.-.... ...+++.--+- --..+-.+++..+++.-....+...+...+..-|
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl 103 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL 103 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHH
Confidence 34689999999999999999998733322 22333322111 1122334445555555444444433444343333
No 495
>PRK00698 tmk thymidylate kinase; Validated
Probab=87.01 E-value=0.55 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+-|.||||+++.+.+...
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998765
No 496
>PRK07429 phosphoribulokinase; Provisional
Probab=87.01 E-value=0.56 Score=52.01 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...-+|||.|..|.||||+|+.+..-..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 3567999999999999999999997644
No 497
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=86.95 E-value=0.41 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|+|+|..|+|||||.+.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 498
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=86.93 E-value=0.59 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-|-.+||-|.||||+.+++-....
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcC
Confidence 477899999999999999987654
No 499
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=86.86 E-value=0.5 Score=50.74 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|-++|++|.||||+|+.+.....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999988764
No 500
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=86.84 E-value=0.49 Score=46.46 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
|.++|..|+|||||+..+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
Done!