Query 000945
Match_columns 1212
No_of_seqs 841 out of 5429
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 02:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.1E-37 1.4E-41 388.5 33.0 585 266-1024 51-715 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.7E-36 2.6E-40 376.9 27.9 612 266-1039 101-764 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-31 4.2E-36 336.2 38.9 360 618-1024 248-620 (680)
4 3t6q_A CD180 antigen; protein- 100.0 6E-31 2.1E-35 325.4 28.3 302 619-1001 255-559 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-31 1.1E-35 327.7 25.5 82 268-363 14-95 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 6.9E-30 2.4E-34 320.4 36.9 99 266-376 26-127 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.4E-30 4.9E-35 322.1 29.4 536 268-1025 15-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-30 1.3E-34 318.4 31.0 89 265-365 32-121 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-28 5.8E-33 313.2 30.2 85 266-361 25-110 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.4E-27 2.5E-31 298.1 30.2 533 268-974 7-558 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.4E-26 4.7E-31 284.5 31.4 486 266-943 29-529 (570)
12 2z63_A TOLL-like receptor 4, v 99.9 7.4E-27 2.5E-31 286.9 27.2 459 268-943 10-481 (570)
13 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-27 8.7E-32 289.3 22.4 495 269-1024 9-508 (549)
14 2z81_A CD282 antigen, TOLL-lik 99.9 7.2E-27 2.5E-31 285.3 26.1 180 266-531 27-207 (549)
15 4eco_A Uncharacterized protein 99.9 1.1E-26 3.8E-31 286.0 21.3 163 486-713 239-413 (636)
16 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-26 7.6E-31 278.6 20.3 154 774-943 323-479 (520)
17 4ecn_A Leucine-rich repeat pro 99.9 1.2E-25 4.2E-30 279.9 24.0 361 507-974 437-838 (876)
18 4eco_A Uncharacterized protein 99.9 2.3E-25 8E-30 274.2 24.0 210 775-1003 402-633 (636)
19 4ecn_A Leucine-rich repeat pro 99.9 8.6E-25 2.9E-29 272.3 29.0 359 486-943 440-838 (876)
20 2z7x_B TOLL-like receptor 1, v 99.9 9.9E-25 3.4E-29 264.1 24.4 439 467-1025 21-480 (520)
21 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-23 4.3E-28 262.2 29.9 89 266-366 53-142 (635)
22 1jl5_A Outer protein YOPM; leu 99.9 6.4E-25 2.2E-29 257.7 15.4 340 266-839 12-351 (454)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-23 5.2E-28 255.6 21.7 154 774-943 352-508 (562)
24 4g8a_A TOLL-like receptor 4; l 99.9 3.9E-22 1.3E-26 248.7 33.0 83 270-366 36-118 (635)
25 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.3E-28 245.9 16.0 286 617-1010 152-437 (454)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-22 6E-27 246.2 24.3 460 439-1025 32-509 (562)
27 1o6v_A Internalin A; bacterial 99.9 1.7E-21 5.9E-26 231.2 27.2 254 617-943 133-386 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-22 1.6E-26 233.6 19.3 143 617-839 211-353 (457)
29 1o6v_A Internalin A; bacterial 99.9 5.7E-21 2E-25 226.8 27.2 80 266-362 47-126 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 7.2E-21 2.5E-25 226.1 23.6 133 800-943 274-406 (455)
31 4fmz_A Internalin; leucine ric 99.9 1.1E-20 3.7E-25 215.5 21.6 236 617-943 109-344 (347)
32 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-21 8.3E-26 227.5 16.2 166 488-738 36-201 (457)
33 3o6n_A APL1; leucine-rich repe 99.8 2.6E-20 8.9E-25 215.9 22.5 308 492-943 43-350 (390)
34 4fmz_A Internalin; leucine ric 99.8 3.2E-20 1.1E-24 211.6 20.6 304 615-1000 41-344 (347)
35 3oja_B Anopheles plasmodium-re 99.8 5.2E-20 1.8E-24 225.4 22.0 308 492-943 49-356 (597)
36 3o6n_A APL1; leucine-rich repe 99.8 2.8E-19 9.7E-24 207.1 23.8 59 618-686 205-263 (390)
37 3v47_A TOLL-like receptor 5B a 99.8 1.6E-19 5.5E-24 214.4 22.1 361 617-1025 29-407 (455)
38 3oja_B Anopheles plasmodium-re 99.8 2.9E-19 1E-23 218.8 19.6 263 617-943 50-312 (597)
39 2id5_A Lingo-1, leucine rich r 99.8 1.5E-18 5.1E-23 207.2 24.8 301 467-894 32-332 (477)
40 2id5_A Lingo-1, leucine rich r 99.8 2E-18 6.9E-23 206.0 22.3 204 774-1024 127-331 (477)
41 2p1m_B Transport inhibitor res 99.8 4.7E-20 1.6E-24 227.5 6.8 140 823-975 370-518 (594)
42 3ogk_B Coronatine-insensitive 99.8 4.8E-20 1.6E-24 227.2 5.8 310 617-974 191-524 (592)
43 3ogk_B Coronatine-insensitive 99.8 2E-19 6.9E-24 221.6 9.7 352 616-1022 162-547 (592)
44 4fcg_A Uncharacterized protein 99.8 2.2E-18 7.4E-23 193.4 15.4 227 774-1023 80-311 (328)
45 2p1m_B Transport inhibitor res 99.7 2.3E-19 7.9E-24 221.3 3.9 231 774-1022 288-540 (594)
46 1xku_A Decorin; proteoglycan, 99.7 6.5E-17 2.2E-21 182.5 22.4 222 618-892 52-273 (330)
47 4fcg_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 182.4 20.7 130 799-941 181-310 (328)
48 1xku_A Decorin; proteoglycan, 99.7 5.8E-17 2E-21 182.9 19.5 86 266-365 32-117 (330)
49 2ft3_A Biglycan; proteoglycan, 99.7 6.9E-17 2.4E-21 182.3 20.0 150 776-942 173-330 (332)
50 2ft3_A Biglycan; proteoglycan, 99.7 5E-17 1.7E-21 183.5 17.6 268 618-943 33-305 (332)
51 3g06_A SSPH2 (leucine-rich rep 99.7 3.6E-16 1.2E-20 188.6 21.7 140 774-947 160-299 (622)
52 2a5y_B CED-4; apoptosis; HET: 99.7 3.3E-17 1.1E-21 196.9 11.0 111 152-262 131-257 (549)
53 3g06_A SSPH2 (leucine-rich rep 99.7 4.4E-16 1.5E-20 187.8 19.3 256 618-974 40-295 (622)
54 3o53_A Protein LRIM1, AGAP0063 99.7 5.5E-17 1.9E-21 181.5 10.4 289 619-1003 11-300 (317)
55 2z80_A TOLL-like receptor 2, v 99.7 5.7E-16 1.9E-20 176.5 16.8 187 617-840 51-237 (353)
56 1z7x_W Ribonuclease inhibitor; 99.7 3.6E-18 1.2E-22 203.2 -2.2 163 774-943 226-409 (461)
57 1ogq_A PGIP-2, polygalacturona 99.7 2.6E-16 9E-21 175.3 13.0 253 618-947 50-306 (313)
58 1ogq_A PGIP-2, polygalacturona 99.7 1.2E-15 4E-20 170.1 17.5 254 644-980 50-308 (313)
59 1z7x_W Ribonuclease inhibitor; 99.6 8.3E-18 2.9E-22 200.1 -2.8 167 774-943 255-438 (461)
60 3o53_A Protein LRIM1, AGAP0063 99.6 7.7E-16 2.6E-20 172.2 11.8 203 774-1010 79-283 (317)
61 3oja_A Leucine-rich immune mol 99.6 6.9E-16 2.4E-20 182.8 12.0 59 881-943 190-248 (487)
62 2z80_A TOLL-like receptor 2, v 99.6 3.8E-15 1.3E-19 169.7 14.4 277 618-943 31-312 (353)
63 3zyj_A Leucine-rich repeat-con 99.6 7.1E-15 2.4E-19 172.8 16.3 227 774-1025 63-291 (440)
64 3zyi_A Leucine-rich repeat-con 99.6 1.8E-14 6.1E-19 170.1 18.7 226 617-916 74-300 (452)
65 1ozn_A Reticulon 4 receptor; N 99.6 7.5E-15 2.6E-19 161.6 14.4 131 774-916 104-235 (285)
66 3zyj_A Leucine-rich repeat-con 99.6 2.2E-14 7.4E-19 168.7 18.3 226 617-916 63-289 (440)
67 3oja_A Leucine-rich immune mol 99.6 5.4E-15 1.8E-19 175.2 12.4 218 774-1026 33-250 (487)
68 2xwt_C Thyrotropin receptor; s 99.6 8.4E-15 2.9E-19 156.4 12.1 201 774-1001 30-238 (239)
69 3zyi_A Leucine-rich repeat-con 99.6 1.1E-14 3.9E-19 171.8 13.9 227 774-1025 74-302 (452)
70 2z66_A Variable lymphocyte rec 99.5 1.9E-14 6.4E-19 160.4 13.2 82 268-361 10-91 (306)
71 2z66_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 157.1 14.9 228 774-1025 27-260 (306)
72 2xwt_C Thyrotropin receptor; s 99.5 8.3E-14 2.8E-18 148.7 15.6 186 617-841 30-221 (239)
73 1vt4_I APAF-1 related killer D 99.5 7.2E-15 2.5E-19 177.4 6.8 115 151-265 130-261 (1221)
74 4ay9_X Follicle-stimulating ho 99.5 6.4E-13 2.2E-17 150.6 19.3 243 622-943 13-257 (350)
75 4ay9_X Follicle-stimulating ho 99.5 3.9E-13 1.3E-17 152.4 14.8 226 617-891 29-255 (350)
76 1ozn_A Reticulon 4 receptor; N 99.4 2.7E-13 9.1E-18 149.2 13.0 222 778-1025 14-237 (285)
77 2z62_A TOLL-like receptor 4, v 99.4 1.8E-13 6.3E-18 149.7 10.4 157 774-943 27-188 (276)
78 3rfs_A Internalin B, repeat mo 99.4 2E-13 6.8E-18 148.7 9.1 125 775-917 109-233 (272)
79 1wwl_A Monocyte differentiatio 99.4 1.3E-13 4.5E-18 153.6 7.7 157 467-681 149-307 (312)
80 1p9a_G Platelet glycoprotein I 99.4 2E-12 6.8E-17 141.8 16.4 197 774-1024 9-206 (290)
81 2z62_A TOLL-like receptor 4, v 99.4 1.4E-12 4.9E-17 142.5 13.0 206 800-1026 27-237 (276)
82 1h6u_A Internalin H; cell adhe 99.4 1E-12 3.5E-17 145.8 11.1 189 774-1000 40-228 (308)
83 2o6q_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 141.3 12.0 155 774-942 36-191 (270)
84 1wwl_A Monocyte differentiatio 99.4 7.3E-13 2.5E-17 147.5 8.9 203 774-1024 94-307 (312)
85 2o6q_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 141.3 11.5 199 775-1024 16-216 (270)
86 3rfs_A Internalin B, repeat mo 99.4 2.3E-12 7.8E-17 140.3 12.6 154 774-943 62-216 (272)
87 1p9a_G Platelet glycoprotein I 99.3 5E-12 1.7E-16 138.6 14.2 130 774-916 76-205 (290)
88 3sfz_A APAF-1, apoptotic pepti 99.3 4.7E-13 1.6E-17 180.4 7.1 121 145-265 120-253 (1249)
89 2ast_B S-phase kinase-associat 99.3 4.2E-13 1.4E-17 151.8 5.1 78 267-359 49-129 (336)
90 1h6u_A Internalin H; cell adhe 99.3 8.1E-12 2.8E-16 138.5 15.1 36 642-681 39-74 (308)
91 2ast_B S-phase kinase-associat 99.3 7.1E-13 2.4E-17 149.9 3.8 207 775-999 70-282 (336)
92 3qfl_A MLA10; coiled-coil, (CC 99.3 1.2E-11 4.2E-16 111.7 9.5 77 7-91 5-82 (115)
93 4glp_A Monocyte differentiatio 99.3 5.2E-12 1.8E-16 140.5 8.3 205 774-1024 90-305 (310)
94 3m19_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 129.4 12.3 156 774-943 34-190 (251)
95 4glp_A Monocyte differentiatio 99.2 9.2E-12 3.2E-16 138.5 8.0 140 879-1026 142-285 (310)
96 1z6t_A APAF-1, apoptotic prote 99.2 1.5E-11 5E-16 150.5 9.5 116 147-263 122-251 (591)
97 2ca6_A RAN GTPase-activating p 99.2 1.3E-12 4.6E-17 150.6 -0.5 164 775-941 159-339 (386)
98 1h6t_A Internalin B; cell adhe 99.2 6.7E-11 2.3E-15 129.7 11.5 145 774-943 67-211 (291)
99 2ca6_A RAN GTPase-activating p 99.2 3.3E-12 1.1E-16 147.2 0.7 241 774-1025 31-315 (386)
100 4ezg_A Putative uncharacterize 99.2 8.9E-11 3E-15 120.6 11.1 150 774-943 43-192 (197)
101 1h6t_A Internalin B; cell adhe 99.2 3.9E-11 1.3E-15 131.7 8.7 145 774-943 45-189 (291)
102 4ezg_A Putative uncharacterize 99.1 7E-11 2.4E-15 121.4 8.7 130 798-943 41-170 (197)
103 1m9s_A Internalin B; cell inva 99.1 6.6E-11 2.3E-15 142.6 8.7 145 774-943 64-208 (605)
104 3cvr_A Invasion plasmid antige 99.1 3.5E-10 1.2E-14 134.6 14.5 142 774-949 99-247 (571)
105 3m19_A Variable lymphocyte rec 99.1 1.2E-10 4.2E-15 124.9 9.6 152 775-943 14-166 (251)
106 1m9s_A Internalin B; cell inva 99.1 1.7E-10 5.9E-15 139.0 10.5 175 698-923 39-213 (605)
107 3cvr_A Invasion plasmid antige 99.1 2.5E-10 8.7E-15 135.8 10.9 138 775-949 59-196 (571)
108 2o6s_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 115.9 12.1 175 779-984 11-186 (208)
109 3goz_A Leucine-rich repeat-con 99.1 3.1E-11 1.1E-15 137.5 2.1 114 802-917 168-295 (362)
110 3iwl_A Copper transport protei 99.0 5.7E-10 1.9E-14 91.4 8.5 67 1116-1183 1-67 (68)
111 2xot_A Amphoterin-induced prot 99.0 6.8E-10 2.3E-14 126.2 10.7 156 774-943 38-200 (361)
112 3e6j_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 115.1 11.0 132 774-943 39-170 (229)
113 1xeu_A Internalin C; cellular 99.0 1.4E-09 4.8E-14 117.1 10.3 144 774-943 40-183 (263)
114 2v9t_B SLIT homolog 2 protein 99.0 1.9E-09 6.5E-14 112.6 10.9 132 775-943 32-163 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.0 2.2E-09 7.4E-14 112.2 11.1 66 775-841 32-97 (220)
116 3goz_A Leucine-rich repeat-con 98.9 8.5E-10 2.9E-14 125.6 8.7 245 266-567 23-295 (362)
117 3e6j_A Variable lymphocyte rec 98.9 2E-09 6.8E-14 113.3 10.8 107 853-974 63-170 (229)
118 2o6s_A Variable lymphocyte rec 98.9 1E-09 3.6E-14 113.8 8.0 155 774-949 27-182 (208)
119 2v70_A SLIT-2, SLIT homolog 2 98.9 2.2E-09 7.5E-14 112.1 10.3 150 778-943 14-164 (220)
120 1dce_A Protein (RAB geranylger 98.9 3.8E-11 1.3E-15 143.9 -3.7 156 774-943 348-519 (567)
121 2v9t_B SLIT homolog 2 protein 98.9 3E-09 1E-13 111.0 11.0 90 875-974 73-163 (220)
122 1xeu_A Internalin C; cellular 98.9 5.3E-10 1.8E-14 120.5 4.8 144 774-943 18-161 (263)
123 1cc8_A Protein (metallochapero 98.9 5.4E-09 1.9E-13 87.0 9.8 68 1115-1182 3-71 (73)
124 1dce_A Protein (RAB geranylger 98.9 3.1E-10 1E-14 136.0 2.6 89 436-538 461-550 (567)
125 2xot_A Amphoterin-induced prot 98.9 2.1E-09 7.1E-14 122.1 8.2 156 778-949 21-179 (361)
126 2ell_A Acidic leucine-rich nuc 98.8 2.9E-09 9.8E-14 106.2 6.4 61 881-943 94-158 (168)
127 2crl_A Copper chaperone for su 98.8 3.6E-08 1.2E-12 86.9 12.3 72 1115-1186 17-88 (98)
128 2ell_A Acidic leucine-rich nuc 98.8 6.5E-09 2.2E-13 103.5 7.4 135 774-923 23-163 (168)
129 3sb4_A Hypothetical leucine ri 98.7 2.5E-08 8.5E-13 111.7 10.6 101 824-938 225-327 (329)
130 2je0_A Acidic leucine-rich nuc 98.7 8.5E-09 2.9E-13 100.3 4.6 127 774-940 16-148 (149)
131 4b8c_D Glucose-repressible alc 98.7 4E-09 1.4E-13 130.7 2.7 106 798-916 221-326 (727)
132 4a4j_A Pacszia, cation-transpo 98.7 5.6E-08 1.9E-12 79.8 8.5 64 1117-1180 2-68 (69)
133 2je0_A Acidic leucine-rich nuc 98.7 9.2E-09 3.1E-13 100.1 4.2 109 853-972 41-149 (149)
134 3dxs_X Copper-transporting ATP 98.6 1.2E-07 4.2E-12 79.0 9.5 67 1116-1182 1-71 (74)
135 4b8c_D Glucose-repressible alc 98.6 2.1E-08 7.3E-13 124.2 5.5 156 775-949 173-333 (727)
136 1w8a_A SLIT protein; signaling 98.6 7.7E-08 2.6E-12 97.9 8.7 125 778-916 11-136 (192)
137 3sb4_A Hypothetical leucine ri 98.6 6.4E-08 2.2E-12 108.3 8.5 227 774-1020 48-328 (329)
138 1a9n_A U2A', U2A'; complex (nu 98.6 3.4E-08 1.2E-12 99.0 5.7 64 879-944 85-152 (176)
139 3fry_A Probable copper-exporti 98.6 8.7E-08 3E-12 79.5 6.7 66 1115-1182 3-69 (73)
140 1a9n_A U2A', U2A'; complex (nu 98.5 1E-07 3.6E-12 95.5 7.8 129 774-916 18-150 (176)
141 2wfh_A SLIT homolog 2 protein 98.5 2.5E-07 8.7E-12 94.0 9.8 122 778-915 13-135 (193)
142 2o6r_A Variable lymphocyte rec 98.5 3.2E-07 1.1E-11 92.0 8.9 125 777-916 9-134 (177)
143 1w5s_A Origin recognition comp 98.4 4.2E-07 1.4E-11 105.5 10.9 113 149-261 22-151 (412)
144 4fdw_A Leucine rich hypothetic 98.4 7.7E-06 2.6E-10 93.3 20.2 127 801-942 248-380 (401)
145 2o6r_A Variable lymphocyte rec 98.4 4E-07 1.4E-11 91.3 8.3 112 774-896 27-138 (177)
146 1w8a_A SLIT protein; signaling 98.4 4E-07 1.4E-11 92.5 8.3 127 804-943 11-137 (192)
147 1ds9_A Outer arm dynein; leuci 98.4 5.3E-08 1.8E-12 99.8 1.4 109 821-944 44-152 (198)
148 2wfh_A SLIT homolog 2 protein 98.4 3.7E-07 1.3E-11 92.8 7.4 99 266-376 32-132 (193)
149 4fdw_A Leucine rich hypothetic 98.3 2.5E-05 8.6E-10 89.0 22.0 60 877-942 295-355 (401)
150 1ds9_A Outer arm dynein; leuci 98.3 3E-08 1E-12 101.7 -2.7 126 797-938 44-180 (198)
151 2xmw_A PACS-N, cation-transpor 98.3 3.3E-06 1.1E-10 69.4 9.9 66 1115-1180 1-69 (71)
152 2k2p_A Uncharacterized protein 98.3 6.1E-07 2.1E-11 76.6 5.2 70 1109-1178 14-84 (85)
153 2roe_A Heavy metal binding pro 98.3 8.1E-07 2.8E-11 71.9 5.3 61 1120-1180 3-64 (66)
154 1qup_A Superoxide dismutase 1 98.2 2.8E-06 9.5E-11 86.7 9.5 70 1116-1185 5-74 (222)
155 2l3m_A Copper-ION-binding prot 98.2 3.6E-06 1.2E-10 69.2 8.2 63 1116-1178 4-70 (71)
156 2xmm_A SSR2857 protein, ATX1; 98.2 1.3E-06 4.4E-11 70.2 5.0 60 1119-1178 3-63 (64)
157 2r9u_A Variable lymphocyte rec 98.2 1.3E-06 4.4E-11 86.9 5.5 88 266-365 34-122 (174)
158 3g39_A Variable lymphocyte rec 98.1 2E-06 6.8E-11 85.3 5.5 84 266-361 31-115 (170)
159 2qen_A Walker-type ATPase; unk 98.1 6.4E-06 2.2E-10 93.1 9.7 108 146-262 9-142 (350)
160 1aw0_A Menkes copper-transport 98.1 1.1E-05 3.8E-10 66.4 8.6 64 1117-1180 3-70 (72)
161 2qby_B CDC6 homolog 3, cell di 98.1 9.8E-06 3.4E-10 92.8 10.8 112 149-261 20-146 (384)
162 1osd_A MERP, hypothetical prot 98.1 1E-05 3.4E-10 66.7 7.9 65 1116-1180 2-70 (72)
163 1jk9_B CCS, copper chaperone f 98.1 8.7E-06 3E-10 84.3 9.1 70 1117-1186 7-76 (249)
164 3cjk_B Copper-transporting ATP 98.1 2.1E-05 7.3E-10 65.3 9.9 65 1118-1182 3-71 (75)
165 2qby_A CDC6 homolog 1, cell di 98.0 1.1E-05 3.9E-10 92.4 10.6 113 149-261 20-141 (386)
166 1q8l_A Copper-transporting ATP 98.0 8.8E-06 3E-10 69.5 7.0 66 1116-1181 8-77 (84)
167 1mwy_A ZNTA; open-faced beta-s 98.0 2.4E-05 8E-10 64.6 9.5 64 1116-1179 2-67 (73)
168 2g9o_A Copper-transporting ATP 98.0 1.5E-05 5.1E-10 69.0 8.5 65 1117-1181 3-74 (90)
169 1y3j_A Copper-transporting ATP 98.0 1.1E-05 3.9E-10 67.4 7.6 66 1116-1181 2-71 (77)
170 3g39_A Variable lymphocyte rec 98.0 4.7E-06 1.6E-10 82.6 5.6 97 267-377 11-109 (170)
171 1fvq_A Copper-transporting ATP 98.0 2.4E-05 8.4E-10 64.3 9.0 65 1118-1182 3-70 (72)
172 2r9u_A Variable lymphocyte rec 98.0 5.7E-06 2E-10 82.2 5.7 96 268-377 15-112 (174)
173 2v1u_A Cell division control p 98.0 3E-05 1E-09 88.9 12.3 113 149-261 19-143 (387)
174 2qif_A Copper chaperone COPZ; 98.0 3E-05 1E-09 62.9 9.0 63 1116-1178 1-67 (69)
175 2aj0_A Probable cadmium-transp 97.9 1.5E-05 5E-10 65.5 6.9 62 1115-1180 1-63 (71)
176 4fs7_A Uncharacterized protein 97.9 0.00039 1.3E-08 79.5 20.6 36 490-528 67-102 (394)
177 3un9_A NLR family member X1; l 97.9 1.2E-06 4.1E-11 98.9 -0.5 167 774-943 71-250 (372)
178 1cpz_A Protein (COPZ); copper 97.9 2.2E-05 7.7E-10 63.6 7.3 61 1120-1180 3-67 (68)
179 1kvi_A Copper-transporting ATP 97.9 1.8E-05 6.2E-10 66.6 6.9 66 1116-1181 7-76 (79)
180 1yjr_A Copper-transporting ATP 97.9 2.6E-05 8.9E-10 64.7 7.7 64 1117-1180 4-71 (75)
181 1yg0_A COP associated protein; 97.9 2.9E-05 1E-09 62.5 7.2 59 1119-1177 3-64 (66)
182 1fnn_A CDC6P, cell division co 97.9 8.2E-05 2.8E-09 85.2 13.6 111 149-260 17-137 (389)
183 1opz_A Potential copper-transp 97.8 3.2E-05 1.1E-09 64.3 7.4 64 1116-1179 5-72 (76)
184 4fs7_A Uncharacterized protein 97.8 0.00022 7.5E-09 81.6 16.6 33 904-939 295-327 (394)
185 2ofg_X Zinc-transporting ATPas 97.8 5.2E-05 1.8E-09 68.5 9.0 66 1115-1180 6-75 (111)
186 2kt2_A Mercuric reductase; nme 97.8 3.2E-05 1.1E-09 63.0 6.9 60 1120-1179 3-65 (69)
187 2ldi_A Zinc-transporting ATPas 97.8 6.3E-05 2.1E-09 61.4 8.3 63 1116-1178 2-68 (71)
188 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.5E-10 77.8 4.7 62 883-945 62-127 (176)
189 2kyz_A Heavy metal binding pro 97.8 1.4E-05 4.8E-10 64.7 4.0 58 1119-1178 3-61 (67)
190 2kkh_A Putative heavy metal tr 97.7 9.3E-05 3.2E-09 64.8 9.0 66 1116-1181 15-84 (95)
191 3un9_A NLR family member X1; l 97.7 5.6E-06 1.9E-10 93.5 1.3 145 774-922 100-254 (372)
192 1jww_A Potential copper-transp 97.7 7.4E-05 2.5E-09 62.9 8.0 66 1116-1181 2-71 (80)
193 2fna_A Conserved hypothetical 97.7 8.7E-05 3E-09 83.9 10.7 69 147-224 11-84 (357)
194 2ra8_A Uncharacterized protein 97.7 4.5E-05 1.5E-09 85.1 7.7 62 615-681 136-204 (362)
195 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.4E-10 76.3 4.4 40 883-922 115-155 (176)
196 3te6_A Regulatory protein SIR3 97.6 0.00023 7.7E-09 76.9 11.8 110 151-260 22-144 (318)
197 2ifg_A High affinity nerve gro 97.6 4E-05 1.4E-09 86.2 6.1 94 269-375 12-108 (347)
198 2ra8_A Uncharacterized protein 97.6 0.00011 3.8E-09 82.0 9.0 56 615-678 169-227 (362)
199 1jbk_A CLPB protein; beta barr 97.6 0.00014 4.9E-09 73.6 8.4 48 148-195 21-68 (195)
200 2ifg_A High affinity nerve gro 97.5 9.9E-05 3.4E-09 83.0 7.5 38 878-916 76-113 (347)
201 1p6t_A Potential copper-transp 97.5 0.00011 3.9E-09 70.9 6.9 65 1117-1181 74-142 (151)
202 2chg_A Replication factor C sm 97.5 0.00032 1.1E-08 73.0 10.6 50 146-195 14-63 (226)
203 2ew9_A Copper-transporting ATP 97.5 0.00016 5.6E-09 69.6 7.5 64 1117-1180 80-147 (149)
204 2rop_A Copper-transporting ATP 97.4 0.00038 1.3E-08 70.9 9.0 66 1117-1182 122-191 (202)
205 1njg_A DNA polymerase III subu 97.3 0.00061 2.1E-08 72.1 9.7 50 146-195 20-70 (250)
206 2p65_A Hypothetical protein PF 97.3 0.00065 2.2E-08 68.2 9.1 48 148-195 21-68 (187)
207 2ew9_A Copper-transporting ATP 97.2 0.00063 2.2E-08 65.4 8.3 66 1116-1181 3-72 (149)
208 2w58_A DNAI, primosome compone 97.2 0.0008 2.7E-08 68.6 9.2 88 156-260 36-127 (202)
209 3ec2_A DNA replication protein 97.2 0.00065 2.2E-08 67.8 8.0 90 154-259 19-111 (180)
210 4gt6_A Cell surface protein; l 97.1 0.033 1.1E-06 63.3 22.8 31 496-529 66-96 (394)
211 1sxj_B Activator 1 37 kDa subu 97.0 0.00072 2.5E-08 75.0 7.0 50 145-194 17-66 (323)
212 2rop_A Copper-transporting ATP 96.6 0.0032 1.1E-07 64.0 7.8 60 1115-1174 18-81 (202)
213 4gt6_A Cell surface protein; l 96.6 0.028 9.6E-07 63.9 16.4 114 813-942 253-367 (394)
214 1iqp_A RFCS; clamp loader, ext 96.6 0.0016 5.6E-08 72.2 5.6 49 146-194 22-70 (327)
215 3h4m_A Proteasome-activating n 96.6 0.0054 1.9E-07 66.3 9.6 51 145-195 13-76 (285)
216 1p6t_A Potential copper-transp 96.5 0.0047 1.6E-07 59.3 7.8 62 1116-1177 5-70 (151)
217 3syl_A Protein CBBX; photosynt 96.3 0.0082 2.8E-07 65.8 8.8 46 151-196 33-93 (309)
218 3pvs_A Replication-associated 96.3 0.011 3.8E-07 67.7 10.0 51 145-195 22-75 (447)
219 4h09_A Hypothetical leucine ri 96.2 0.22 7.4E-06 56.1 20.7 13 667-679 155-167 (379)
220 3b9p_A CG5977-PA, isoform A; A 96.1 0.033 1.1E-06 60.4 12.5 50 146-195 18-79 (297)
221 2z4s_A Chromosomal replication 96.0 0.012 4.2E-07 67.5 8.5 89 157-261 116-207 (440)
222 1sxj_A Activator 1 95 kDa subu 95.9 0.01 3.6E-07 69.9 8.0 51 144-194 34-101 (516)
223 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.021 7.1E-07 60.7 9.3 48 148-195 5-64 (262)
224 3rw6_A Nuclear RNA export fact 95.9 0.0081 2.8E-07 63.1 5.8 171 170-361 24-233 (267)
225 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.028 9.7E-07 61.5 10.5 50 145-194 8-69 (322)
226 2kjq_A DNAA-related protein; s 95.8 0.014 4.8E-07 55.5 7.0 46 162-209 28-73 (149)
227 3cf0_A Transitional endoplasmi 95.8 0.024 8.3E-07 61.5 9.7 51 145-195 11-74 (301)
228 3j09_A COPA, copper-exporting 95.8 0.015 5.2E-07 71.2 8.7 61 1118-1178 3-67 (723)
229 3d8b_A Fidgetin-like protein 1 95.8 0.031 1E-06 62.4 10.5 50 146-195 81-142 (357)
230 1l8q_A Chromosomal replication 95.5 0.03 1E-06 61.7 9.0 89 156-261 21-111 (324)
231 3n70_A Transport activator; si 95.4 0.01 3.4E-07 56.4 4.0 44 150-194 2-48 (145)
232 3eie_A Vacuolar protein sortin 95.3 0.068 2.3E-06 58.6 11.2 53 143-195 12-76 (322)
233 1qvr_A CLPB protein; coiled co 95.3 0.034 1.2E-06 70.0 9.8 51 145-195 166-216 (854)
234 2zan_A Vacuolar protein sortin 95.3 0.052 1.8E-06 62.4 10.4 51 144-194 129-191 (444)
235 3bos_A Putative DNA replicatio 95.2 0.025 8.7E-07 59.1 7.0 54 155-210 37-90 (242)
236 4h09_A Hypothetical leucine ri 95.2 0.43 1.5E-05 53.6 17.7 63 617-688 45-107 (379)
237 1r6b_X CLPA protein; AAA+, N-t 95.2 0.073 2.5E-06 66.3 12.1 49 146-194 183-231 (758)
238 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.012 4E-07 62.8 4.0 69 171-260 124-194 (331)
239 3rw6_A Nuclear RNA export fact 95.1 0.0055 1.9E-07 64.4 1.4 63 880-944 168-232 (267)
240 1io0_A Tropomodulin; LRR prote 95.1 0.0059 2E-07 60.9 1.4 15 929-943 148-162 (185)
241 3u61_B DNA polymerase accessor 95.1 0.091 3.1E-06 57.8 11.2 51 145-195 22-73 (324)
242 3vfd_A Spastin; ATPase, microt 95.0 0.082 2.8E-06 59.7 11.0 52 144-195 110-173 (389)
243 2chq_A Replication factor C sm 95.0 0.02 6.9E-07 62.9 5.7 49 146-194 14-62 (319)
244 3pxg_A Negative regulator of g 95.0 0.02 6.9E-07 66.3 5.9 49 146-194 177-225 (468)
245 2qp9_X Vacuolar protein sortin 95.0 0.079 2.7E-06 58.9 10.5 50 146-195 48-109 (355)
246 1sxj_D Activator 1 41 kDa subu 94.8 0.016 5.6E-07 64.8 4.3 50 145-194 33-82 (353)
247 1rz3_A Hypothetical protein rb 94.7 0.032 1.1E-06 56.3 5.6 42 154-195 3-47 (201)
248 2qgz_A Helicase loader, putati 94.5 0.045 1.5E-06 59.4 6.8 91 154-260 133-226 (308)
249 1d2n_A N-ethylmaleimide-sensit 94.5 0.11 3.7E-06 55.5 9.6 46 150-195 34-89 (272)
250 1sxj_E Activator 1 40 kDa subu 94.5 0.026 9E-07 63.1 5.0 49 146-194 11-60 (354)
251 1hqc_A RUVB; extended AAA-ATPa 94.5 0.024 8.3E-07 62.4 4.6 49 147-195 10-63 (324)
252 1n0w_A DNA repair protein RAD5 94.5 0.17 5.8E-06 52.7 11.0 91 169-260 23-131 (243)
253 2px0_A Flagellar biosynthesis 94.4 0.14 4.6E-06 55.0 10.0 28 169-196 104-131 (296)
254 3pfi_A Holliday junction ATP-d 94.3 0.036 1.2E-06 61.5 5.6 50 146-195 26-80 (338)
255 2cvh_A DNA repair and recombin 94.2 0.091 3.1E-06 53.9 7.9 46 169-219 19-64 (220)
256 1io0_A Tropomodulin; LRR prote 94.1 0.022 7.5E-07 56.7 3.0 86 266-360 66-163 (185)
257 1jr3_A DNA polymerase III subu 94.1 0.049 1.7E-06 61.4 6.2 48 148-195 15-63 (373)
258 1sxj_C Activator 1 40 kDa subu 94.0 0.045 1.5E-06 60.7 5.6 51 145-195 21-71 (340)
259 3c8u_A Fructokinase; YP_612366 93.9 0.059 2E-06 54.7 5.8 39 157-195 7-47 (208)
260 3hr8_A Protein RECA; alpha and 93.9 0.17 5.7E-06 55.5 9.7 85 169-260 60-151 (356)
261 2xxa_A Signal recognition part 93.8 3.2 0.00011 46.9 20.3 28 169-196 99-126 (433)
262 4fcw_A Chaperone protein CLPB; 93.8 0.075 2.6E-06 58.0 6.9 45 151-195 19-72 (311)
263 3lw7_A Adenylate kinase relate 93.8 0.028 9.6E-07 55.4 3.1 20 171-190 2-21 (179)
264 2ga8_A Hypothetical 39.9 kDa p 93.7 0.068 2.3E-06 58.0 6.0 41 155-195 5-49 (359)
265 1lv7_A FTSH; alpha/beta domain 93.6 0.056 1.9E-06 57.1 5.0 50 146-195 9-70 (257)
266 1in4_A RUVB, holliday junction 93.5 0.04 1.4E-06 60.8 4.0 50 146-195 22-76 (334)
267 2x8a_A Nuclear valosin-contain 93.4 0.075 2.6E-06 56.5 5.7 48 147-195 8-69 (274)
268 3kb2_A SPBC2 prophage-derived 93.4 0.043 1.5E-06 53.8 3.5 25 171-195 2-26 (173)
269 1j8m_F SRP54, signal recogniti 93.4 4.1 0.00014 43.4 19.3 26 170-195 98-123 (297)
270 3co5_A Putative two-component 93.3 0.024 8.1E-07 53.6 1.4 44 150-194 5-51 (143)
271 1v5w_A DMC1, meiotic recombina 93.3 0.29 1E-05 53.8 10.5 91 169-260 121-231 (343)
272 1zp6_A Hypothetical protein AT 93.3 0.043 1.5E-06 54.9 3.3 24 170-193 9-32 (191)
273 3uk6_A RUVB-like 2; hexameric 93.3 0.07 2.4E-06 60.0 5.5 48 148-195 43-95 (368)
274 3pxi_A Negative regulator of g 93.2 0.071 2.4E-06 66.2 5.9 49 146-194 177-225 (758)
275 2z43_A DNA repair and recombin 93.2 0.23 8E-06 54.2 9.4 91 169-260 106-215 (324)
276 3vaa_A Shikimate kinase, SK; s 93.2 0.048 1.7E-06 54.9 3.6 27 169-195 24-50 (199)
277 2ck3_D ATP synthase subunit be 93.1 0.31 1.1E-05 54.9 10.1 101 160-261 142-266 (482)
278 1kgd_A CASK, peripheral plasma 93.1 0.05 1.7E-06 53.8 3.4 24 171-194 6-29 (180)
279 3hu3_A Transitional endoplasmi 93.0 0.19 6.5E-06 58.1 8.8 48 147-194 202-262 (489)
280 3dm5_A SRP54, signal recogniti 92.9 3.9 0.00013 46.0 18.8 27 169-195 99-125 (443)
281 1qhx_A CPT, protein (chloramph 92.9 0.058 2E-06 53.2 3.6 25 171-195 4-28 (178)
282 2hf9_A Probable hydrogenase ni 92.9 0.087 3E-06 54.3 5.1 38 158-195 26-63 (226)
283 2bjv_A PSP operon transcriptio 92.8 0.06 2.1E-06 57.2 3.8 46 149-195 6-54 (265)
284 1kag_A SKI, shikimate kinase I 92.8 0.049 1.7E-06 53.4 2.9 25 171-195 5-29 (173)
285 2wsm_A Hydrogenase expression/ 92.7 0.07 2.4E-06 54.8 4.1 43 153-195 13-55 (221)
286 1ixz_A ATP-dependent metallopr 92.7 0.14 4.8E-06 53.9 6.5 23 173-195 52-74 (254)
287 1xjc_A MOBB protein homolog; s 92.5 0.078 2.7E-06 51.1 3.8 27 169-195 3-29 (169)
288 1fx0_B ATP synthase beta chain 92.5 0.28 9.7E-06 55.4 8.9 100 161-261 155-279 (498)
289 1knq_A Gluconate kinase; ALFA/ 92.5 0.074 2.5E-06 52.2 3.8 25 170-194 8-32 (175)
290 1ye8_A Protein THEP1, hypothet 92.5 0.069 2.4E-06 52.4 3.4 24 172-195 2-25 (178)
291 3uie_A Adenylyl-sulfate kinase 92.4 0.071 2.4E-06 53.8 3.6 28 168-195 23-50 (200)
292 3trf_A Shikimate kinase, SK; a 92.4 0.074 2.5E-06 52.8 3.6 25 170-194 5-29 (185)
293 3io5_A Recombination and repai 92.4 0.64 2.2E-05 49.3 10.7 84 172-260 30-123 (333)
294 1ofh_A ATP-dependent HSL prote 92.3 0.084 2.9E-06 57.6 4.4 46 150-195 16-75 (310)
295 3rfe_A Platelet glycoprotein I 92.3 0.075 2.6E-06 49.0 3.3 54 269-325 12-67 (130)
296 1ly1_A Polynucleotide kinase; 92.3 0.075 2.6E-06 52.5 3.6 22 171-192 3-24 (181)
297 4eun_A Thermoresistant glucoki 92.3 0.074 2.5E-06 53.6 3.6 26 169-194 28-53 (200)
298 2r62_A Cell division protease 92.3 0.052 1.8E-06 57.8 2.5 23 173-195 47-69 (268)
299 3t61_A Gluconokinase; PSI-biol 92.2 0.064 2.2E-06 54.2 3.0 25 170-194 18-42 (202)
300 2zr9_A Protein RECA, recombina 92.2 0.36 1.2E-05 53.1 9.2 85 169-260 60-151 (349)
301 2bdt_A BH3686; alpha-beta prot 92.2 0.079 2.7E-06 52.8 3.6 22 171-192 3-24 (189)
302 2if2_A Dephospho-COA kinase; a 92.2 0.077 2.6E-06 53.7 3.5 22 171-192 2-23 (204)
303 4gp7_A Metallophosphoesterase; 92.2 0.062 2.1E-06 52.5 2.7 23 170-192 9-31 (171)
304 2i1q_A DNA repair and recombin 92.2 0.49 1.7E-05 51.6 10.3 58 169-227 97-168 (322)
305 1zuh_A Shikimate kinase; alpha 92.2 0.081 2.8E-06 51.5 3.5 27 169-195 6-32 (168)
306 3tr0_A Guanylate kinase, GMP k 92.1 0.076 2.6E-06 53.8 3.4 24 171-194 8-31 (205)
307 1u94_A RECA protein, recombina 92.1 0.37 1.3E-05 53.0 9.1 85 169-260 62-153 (356)
308 1nks_A Adenylate kinase; therm 92.1 0.092 3.1E-06 52.5 3.9 25 171-195 2-26 (194)
309 3fwy_A Light-independent proto 92.1 0.077 2.6E-06 57.4 3.5 25 168-192 46-70 (314)
310 3iij_A Coilin-interacting nucl 92.0 0.071 2.4E-06 52.6 3.0 25 170-194 11-35 (180)
311 2jaq_A Deoxyguanosine kinase; 92.0 0.084 2.9E-06 53.4 3.6 24 172-195 2-25 (205)
312 3asz_A Uridine kinase; cytidin 92.0 0.089 3E-06 53.6 3.7 27 169-195 5-31 (211)
313 1iy2_A ATP-dependent metallopr 91.9 0.2 6.7E-06 53.6 6.5 50 145-195 36-98 (278)
314 2qt1_A Nicotinamide riboside k 91.9 0.093 3.2E-06 53.2 3.8 25 169-193 20-44 (207)
315 1odf_A YGR205W, hypothetical 3 91.9 0.17 5.9E-06 54.0 5.9 28 168-195 29-56 (290)
316 3lda_A DNA repair protein RAD5 91.9 0.38 1.3E-05 53.8 8.9 58 169-227 177-238 (400)
317 2yvu_A Probable adenylyl-sulfa 91.8 0.1 3.5E-06 51.8 3.9 27 169-195 12-38 (186)
318 1sky_E F1-ATPase, F1-ATP synth 91.8 0.33 1.1E-05 54.8 8.3 89 171-260 152-257 (473)
319 3kl4_A SRP54, signal recogniti 91.8 0.63 2.1E-05 52.4 10.6 27 169-195 96-122 (433)
320 3a00_A Guanylate kinase, GMP k 91.8 0.073 2.5E-06 52.9 2.8 25 171-195 2-26 (186)
321 2j41_A Guanylate kinase; GMP, 91.7 0.09 3.1E-06 53.3 3.4 25 170-194 6-30 (207)
322 1cke_A CK, MSSA, protein (cyti 91.7 0.094 3.2E-06 54.1 3.6 24 171-194 6-29 (227)
323 2qtf_A Protein HFLX, GTP-bindi 91.7 0.96 3.3E-05 50.0 11.9 25 169-193 178-202 (364)
324 1uf9_A TT1252 protein; P-loop, 91.6 0.1 3.5E-06 52.6 3.7 26 168-193 6-31 (203)
325 1kht_A Adenylate kinase; phosp 91.6 0.099 3.4E-06 52.2 3.6 25 171-195 4-28 (192)
326 2qor_A Guanylate kinase; phosp 91.5 0.086 2.9E-06 53.3 3.0 26 169-194 11-36 (204)
327 1htw_A HI0065; nucleotide-bind 91.5 0.11 3.8E-06 49.6 3.6 26 169-194 32-57 (158)
328 1jjv_A Dephospho-COA kinase; P 91.5 0.088 3E-06 53.3 3.1 22 171-192 3-24 (206)
329 3tau_A Guanylate kinase, GMP k 91.4 0.1 3.5E-06 52.9 3.4 26 169-194 7-32 (208)
330 1y63_A LMAJ004144AAA protein; 91.4 0.11 3.7E-06 51.5 3.6 24 170-193 10-33 (184)
331 1lvg_A Guanylate kinase, GMP k 91.4 0.087 3E-06 52.9 2.9 24 171-194 5-28 (198)
332 3aez_A Pantothenate kinase; tr 91.4 0.098 3.4E-06 56.6 3.4 27 169-195 89-115 (312)
333 1via_A Shikimate kinase; struc 91.4 0.094 3.2E-06 51.5 3.0 25 171-195 5-29 (175)
334 2rhm_A Putative kinase; P-loop 91.3 0.12 4.2E-06 51.6 3.9 25 170-194 5-29 (193)
335 1ukz_A Uridylate kinase; trans 91.2 0.13 4.6E-06 51.8 4.1 26 169-194 14-39 (203)
336 2ze6_A Isopentenyl transferase 91.2 0.13 4.3E-06 54.0 4.0 25 171-195 2-26 (253)
337 1g8p_A Magnesium-chelatase 38 91.1 0.11 3.9E-06 57.7 3.8 51 145-195 20-70 (350)
338 1znw_A Guanylate kinase, GMP k 91.0 0.12 4E-06 52.4 3.4 26 169-194 19-44 (207)
339 2bbw_A Adenylate kinase 4, AK4 91.0 0.12 4.1E-06 54.1 3.6 27 169-195 26-52 (246)
340 1xp8_A RECA protein, recombina 91.0 0.6 2E-05 51.5 9.3 84 170-260 74-164 (366)
341 3ney_A 55 kDa erythrocyte memb 91.0 0.13 4.5E-06 51.0 3.6 26 169-194 18-43 (197)
342 2pt5_A Shikimate kinase, SK; a 90.9 0.13 4.5E-06 50.0 3.5 24 172-195 2-25 (168)
343 1tev_A UMP-CMP kinase; ploop, 90.9 0.13 4.6E-06 51.4 3.8 24 171-194 4-27 (196)
344 1ojl_A Transcriptional regulat 90.9 0.14 4.8E-06 55.4 4.1 44 150-194 3-49 (304)
345 2iyv_A Shikimate kinase, SK; t 90.9 0.1 3.5E-06 51.7 2.8 24 172-195 4-27 (184)
346 2c95_A Adenylate kinase 1; tra 90.9 0.13 4.6E-06 51.4 3.7 26 169-194 8-33 (196)
347 2grj_A Dephospho-COA kinase; T 90.9 0.14 4.8E-06 50.8 3.8 25 169-193 11-35 (192)
348 4e22_A Cytidylate kinase; P-lo 90.9 0.11 3.7E-06 54.5 3.1 27 169-195 26-52 (252)
349 3ice_A Transcription terminati 90.9 0.28 9.7E-06 53.4 6.3 53 160-213 163-217 (422)
350 2f1r_A Molybdopterin-guanine d 90.8 0.082 2.8E-06 51.4 1.9 27 170-196 2-28 (171)
351 4b4t_M 26S protease regulatory 90.8 0.24 8.3E-06 55.7 5.9 52 144-195 176-240 (434)
352 3cm0_A Adenylate kinase; ATP-b 90.8 0.14 4.6E-06 50.9 3.6 24 171-194 5-28 (186)
353 1uj2_A Uridine-cytidine kinase 90.8 0.14 4.8E-06 53.7 3.8 27 169-195 21-47 (252)
354 2i3b_A HCR-ntpase, human cance 90.8 0.12 4.1E-06 51.2 3.1 25 171-195 2-26 (189)
355 2bwj_A Adenylate kinase 5; pho 90.7 0.14 4.8E-06 51.4 3.7 25 171-195 13-37 (199)
356 1z6g_A Guanylate kinase; struc 90.7 0.11 3.8E-06 53.1 2.9 25 170-194 23-47 (218)
357 1qf9_A UMP/CMP kinase, protein 90.7 0.15 5.2E-06 50.9 3.9 25 170-194 6-30 (194)
358 1e6c_A Shikimate kinase; phosp 90.6 0.12 4.1E-06 50.5 3.0 25 171-195 3-27 (173)
359 2cdn_A Adenylate kinase; phosp 90.5 0.15 5E-06 51.4 3.6 25 171-195 21-45 (201)
360 4b4t_K 26S protease regulatory 90.5 0.25 8.6E-06 55.5 5.8 52 144-195 167-231 (428)
361 2jeo_A Uridine-cytidine kinase 90.5 0.14 4.7E-06 53.6 3.4 26 169-194 24-49 (245)
362 3a4m_A L-seryl-tRNA(SEC) kinas 90.5 0.16 5.5E-06 53.5 4.0 25 170-194 4-28 (260)
363 2pbr_A DTMP kinase, thymidylat 90.4 0.15 5.2E-06 50.9 3.6 24 172-195 2-25 (195)
364 4b4t_L 26S protease subunit RP 90.4 0.31 1.1E-05 54.9 6.3 52 144-195 176-240 (437)
365 1rj9_A FTSY, signal recognitio 90.3 0.17 5.6E-06 54.5 3.9 28 169-196 101-128 (304)
366 2vli_A Antibiotic resistance p 90.3 0.13 4.3E-06 51.0 2.8 25 171-195 6-30 (183)
367 1s96_A Guanylate kinase, GMP k 90.2 0.16 5.3E-06 51.8 3.4 27 169-195 15-41 (219)
368 1ypw_A Transitional endoplasmi 90.2 0.25 8.4E-06 61.3 5.9 50 146-195 201-263 (806)
369 3tqc_A Pantothenate kinase; bi 90.2 0.26 8.8E-06 53.2 5.3 27 169-195 91-117 (321)
370 4b4t_H 26S protease regulatory 90.2 0.27 9.3E-06 55.2 5.6 51 145-195 205-268 (467)
371 3hws_A ATP-dependent CLP prote 90.1 0.26 8.8E-06 55.0 5.5 45 151-195 17-76 (363)
372 2plr_A DTMP kinase, probable t 90.1 0.17 5.9E-06 51.4 3.8 25 171-195 5-29 (213)
373 1np6_A Molybdopterin-guanine d 90.1 0.19 6.6E-06 48.8 3.8 26 170-195 6-31 (174)
374 4a74_A DNA repair and recombin 90.1 0.5 1.7E-05 48.6 7.4 48 169-216 24-75 (231)
375 3t15_A Ribulose bisphosphate c 90.0 0.19 6.6E-06 54.0 4.2 26 170-195 36-61 (293)
376 4b4t_J 26S protease regulatory 90.0 0.26 8.9E-06 54.6 5.2 53 143-195 142-207 (405)
377 3nwj_A ATSK2; P loop, shikimat 90.0 0.14 4.7E-06 53.3 2.9 26 170-195 48-73 (250)
378 2pez_A Bifunctional 3'-phospho 90.0 0.18 6.1E-06 49.6 3.6 26 170-195 5-30 (179)
379 1um8_A ATP-dependent CLP prote 89.9 0.26 8.8E-06 55.4 5.3 24 171-194 73-96 (376)
380 3p32_A Probable GTPase RV1496/ 89.9 0.29 9.8E-06 54.3 5.5 38 158-195 65-104 (355)
381 2f6r_A COA synthase, bifunctio 89.8 0.18 6.1E-06 53.8 3.7 23 169-191 74-96 (281)
382 3b9q_A Chloroplast SRP recepto 89.6 0.18 6.3E-06 54.1 3.6 43 169-214 99-141 (302)
383 2r44_A Uncharacterized protein 89.6 0.16 5.5E-06 55.9 3.3 44 150-195 28-71 (331)
384 3b85_A Phosphate starvation-in 89.6 0.17 5.8E-06 51.0 3.1 24 170-193 22-45 (208)
385 2z0h_A DTMP kinase, thymidylat 89.6 0.19 6.6E-06 50.3 3.6 24 172-195 2-25 (197)
386 1m7g_A Adenylylsulfate kinase; 89.6 0.2 7E-06 50.8 3.8 27 169-195 24-50 (211)
387 1zd8_A GTP:AMP phosphotransfer 89.5 0.2 6.9E-06 51.5 3.7 25 170-194 7-31 (227)
388 4b4t_I 26S protease regulatory 89.5 0.36 1.2E-05 53.6 5.8 52 144-195 177-241 (437)
389 2wwf_A Thymidilate kinase, put 89.4 0.21 7E-06 50.8 3.7 32 170-202 10-41 (212)
390 1gtv_A TMK, thymidylate kinase 89.4 0.12 4.3E-06 52.6 2.0 24 172-195 2-25 (214)
391 2onk_A Molybdate/tungstate ABC 89.4 0.19 6.7E-06 51.9 3.5 25 169-194 24-48 (240)
392 3bpd_A Uncharacterized protein 89.4 1.7 5.7E-05 36.0 8.0 61 1116-1176 6-74 (100)
393 1vht_A Dephospho-COA kinase; s 89.4 0.17 5.9E-06 51.7 3.1 22 171-192 5-26 (218)
394 1ex7_A Guanylate kinase; subst 89.4 0.17 5.7E-06 49.8 2.8 23 172-194 3-25 (186)
395 1nn5_A Similar to deoxythymidy 89.3 0.21 7.2E-06 50.8 3.7 32 170-202 9-40 (215)
396 2ce7_A Cell division protein F 89.3 0.41 1.4E-05 54.8 6.4 49 147-195 14-74 (476)
397 2pcj_A ABC transporter, lipopr 89.3 0.19 6.3E-06 51.5 3.2 25 170-194 30-54 (224)
398 1sq5_A Pantothenate kinase; P- 89.3 0.2 6.7E-06 54.4 3.5 27 169-195 79-105 (308)
399 3tif_A Uncharacterized ABC tra 89.2 0.18 6.3E-06 52.0 3.1 26 169-194 30-55 (235)
400 2ffh_A Protein (FFH); SRP54, s 89.2 1.5 5.2E-05 49.2 10.7 27 169-195 97-123 (425)
401 1gvn_B Zeta; postsegregational 89.2 0.35 1.2E-05 51.6 5.4 26 169-194 32-57 (287)
402 1aky_A Adenylate kinase; ATP:A 89.1 0.22 7.4E-06 51.0 3.6 25 171-195 5-29 (220)
403 3d3q_A TRNA delta(2)-isopenten 89.0 0.23 7.8E-06 53.8 3.8 24 171-194 8-31 (340)
404 3e70_C DPA, signal recognition 89.0 0.46 1.6E-05 51.6 6.2 28 169-196 128-155 (328)
405 3fb4_A Adenylate kinase; psych 89.0 0.22 7.7E-06 50.7 3.6 23 172-194 2-24 (216)
406 3hjn_A DTMP kinase, thymidylat 88.9 0.72 2.4E-05 46.0 7.1 25 172-196 2-26 (197)
407 3nbx_X ATPase RAVA; AAA+ ATPas 88.9 0.19 6.5E-06 58.0 3.3 44 150-195 23-66 (500)
408 2gno_A DNA polymerase III, gam 88.9 1.4 4.8E-05 47.3 9.9 89 155-260 3-94 (305)
409 2cbz_A Multidrug resistance-as 88.8 0.2 6.9E-06 51.7 3.1 26 169-194 30-55 (237)
410 3vr4_D V-type sodium ATPase su 88.8 0.7 2.4E-05 51.7 7.5 99 160-260 140-260 (465)
411 1oix_A RAS-related protein RAB 88.8 0.24 8.2E-06 49.3 3.5 25 170-194 29-53 (191)
412 3r20_A Cytidylate kinase; stru 88.8 0.24 8.4E-06 50.6 3.6 26 170-195 9-34 (233)
413 3dl0_A Adenylate kinase; phosp 88.7 0.24 8.3E-06 50.5 3.6 23 172-194 2-24 (216)
414 2c9o_A RUVB-like 1; hexameric 88.6 0.38 1.3E-05 55.4 5.6 48 148-195 36-88 (456)
415 1a5t_A Delta prime, HOLB; zinc 88.6 1.5 5.1E-05 48.0 10.2 41 155-195 8-49 (334)
416 3lnc_A Guanylate kinase, GMP k 88.5 0.15 5.1E-06 52.7 1.9 25 170-194 27-52 (231)
417 3geh_A MNME, tRNA modification 88.5 2.9 9.8E-05 47.8 12.7 87 63-194 162-248 (462)
418 3ake_A Cytidylate kinase; CMP 88.5 0.25 8.6E-06 49.9 3.6 24 172-195 4-27 (208)
419 3gfo_A Cobalt import ATP-bindi 88.5 0.21 7.3E-06 52.7 3.1 25 170-194 34-58 (275)
420 2dhr_A FTSH; AAA+ protein, hex 88.5 0.48 1.6E-05 54.6 6.2 49 147-195 29-89 (499)
421 1b0u_A Histidine permease; ABC 88.4 0.22 7.5E-06 52.3 3.1 35 169-206 31-65 (262)
422 2v54_A DTMP kinase, thymidylat 88.4 0.25 8.5E-06 49.8 3.4 24 171-194 5-28 (204)
423 2og2_A Putative signal recogni 88.4 0.25 8.5E-06 54.3 3.6 42 170-214 157-198 (359)
424 2ehv_A Hypothetical protein PH 88.4 0.22 7.5E-06 52.2 3.1 24 169-192 29-52 (251)
425 2d2e_A SUFC protein; ABC-ATPas 88.4 0.24 8.1E-06 51.7 3.3 24 170-193 29-52 (250)
426 3end_A Light-independent proto 88.2 0.25 8.5E-06 53.7 3.5 29 167-195 38-66 (307)
427 2p5t_B PEZT; postsegregational 88.2 0.34 1.2E-05 50.7 4.4 26 169-194 31-56 (253)
428 2pze_A Cystic fibrosis transme 88.2 0.24 8.1E-06 50.9 3.1 25 170-194 34-58 (229)
429 1yrb_A ATP(GTP)binding protein 88.2 0.26 8.8E-06 52.1 3.5 27 169-195 13-39 (262)
430 1sgw_A Putative ABC transporte 88.1 0.2 7E-06 50.6 2.5 25 170-194 35-59 (214)
431 1ji0_A ABC transporter; ATP bi 88.1 0.24 8.2E-06 51.3 3.1 25 170-194 32-56 (240)
432 2olj_A Amino acid ABC transpor 88.1 0.24 8.2E-06 52.0 3.1 26 169-194 49-74 (263)
433 2zu0_C Probable ATP-dependent 88.1 0.25 8.6E-06 52.1 3.3 25 169-193 45-69 (267)
434 2yhs_A FTSY, cell division pro 88.0 0.29 1E-05 55.6 3.9 43 169-214 292-334 (503)
435 4g1u_C Hemin import ATP-bindin 88.0 0.24 8.2E-06 52.1 3.1 26 169-194 36-61 (266)
436 2e87_A Hypothetical protein PH 87.9 12 0.00041 41.1 17.1 26 168-193 165-190 (357)
437 1zak_A Adenylate kinase; ATP:A 87.9 0.28 9.5E-06 50.3 3.5 26 170-195 5-30 (222)
438 1mv5_A LMRA, multidrug resista 87.9 0.26 9E-06 51.1 3.3 26 169-194 27-52 (243)
439 1g6h_A High-affinity branched- 87.9 0.25 8.6E-06 51.8 3.1 26 170-195 33-58 (257)
440 2ff7_A Alpha-hemolysin translo 87.8 0.26 8.9E-06 51.3 3.1 34 170-206 35-68 (247)
441 3be4_A Adenylate kinase; malar 87.8 0.31 1.1E-05 49.7 3.7 24 171-194 6-29 (217)
442 1vma_A Cell division protein F 87.7 0.3 1E-05 52.5 3.6 27 169-195 103-129 (306)
443 2xb4_A Adenylate kinase; ATP-b 87.7 0.3 1E-05 50.0 3.6 23 172-194 2-24 (223)
444 1vpl_A ABC transporter, ATP-bi 87.7 0.26 9E-06 51.4 3.1 26 169-194 40-65 (256)
445 1e4v_A Adenylate kinase; trans 87.7 0.32 1.1E-05 49.4 3.7 23 172-194 2-24 (214)
446 3l0o_A Transcription terminati 87.6 1.6 5.5E-05 47.5 9.0 51 160-211 164-216 (427)
447 2ghi_A Transport protein; mult 87.6 0.27 9.1E-06 51.6 3.1 26 169-194 45-70 (260)
448 2dyk_A GTP-binding protein; GT 87.6 0.34 1.2E-05 46.3 3.7 23 171-193 2-24 (161)
449 2wji_A Ferrous iron transport 87.5 0.28 9.7E-06 47.3 3.1 23 171-193 4-26 (165)
450 3k1j_A LON protease, ATP-depen 87.5 0.3 1E-05 58.6 3.9 49 145-195 37-85 (604)
451 2afh_E Nitrogenase iron protei 87.5 0.3 1E-05 52.4 3.6 26 170-195 2-27 (289)
452 1ls1_A Signal recognition part 87.5 0.29 1E-05 52.5 3.4 27 169-195 97-123 (295)
453 2qi9_C Vitamin B12 import ATP- 87.5 0.28 9.4E-06 51.0 3.1 26 170-195 26-51 (249)
454 2f9l_A RAB11B, member RAS onco 87.4 0.31 1.1E-05 48.9 3.4 24 170-193 5-28 (199)
455 2ixe_A Antigen peptide transpo 87.4 0.28 9.4E-06 51.9 3.1 35 169-206 44-78 (271)
456 3sop_A Neuronal-specific septi 87.4 0.31 1.1E-05 51.4 3.5 24 172-195 4-27 (270)
457 1cp2_A CP2, nitrogenase iron p 87.4 0.3 1E-05 51.8 3.4 25 171-195 2-26 (269)
458 1zu4_A FTSY; GTPase, signal re 87.3 0.29 9.9E-06 53.1 3.2 27 169-195 104-130 (320)
459 2yz2_A Putative ABC transporte 87.2 0.29 9.8E-06 51.6 3.1 26 169-194 32-57 (266)
460 2v9p_A Replication protein E1; 87.2 0.31 1.1E-05 52.1 3.3 26 169-194 125-150 (305)
461 3m6a_A ATP-dependent protease 87.2 0.48 1.7E-05 55.8 5.3 45 151-195 83-133 (543)
462 2ihy_A ABC transporter, ATP-bi 87.1 0.29 1E-05 51.8 3.1 27 169-195 46-72 (279)
463 2nq2_C Hypothetical ABC transp 87.1 0.29 1E-05 51.0 3.0 25 170-194 31-55 (253)
464 3tlx_A Adenylate kinase 2; str 87.0 0.35 1.2E-05 50.3 3.6 26 169-194 28-53 (243)
465 2ce2_X GTPase HRAS; signaling 87.0 0.34 1.1E-05 46.6 3.3 23 172-194 5-27 (166)
466 3umf_A Adenylate kinase; rossm 87.0 0.41 1.4E-05 48.4 3.9 27 169-195 28-54 (217)
467 4eaq_A DTMP kinase, thymidylat 87.0 0.59 2E-05 47.9 5.3 32 169-202 25-56 (229)
468 1pzn_A RAD51, DNA repair and r 86.8 0.74 2.5E-05 50.7 6.2 49 169-217 130-182 (349)
469 2zej_A Dardarin, leucine-rich 86.8 0.3 1E-05 48.2 2.8 21 172-192 4-24 (184)
470 3crm_A TRNA delta(2)-isopenten 86.8 0.38 1.3E-05 51.6 3.7 24 171-194 6-29 (323)
471 3t1o_A Gliding protein MGLA; G 86.7 0.34 1.2E-05 48.3 3.2 25 170-194 14-38 (198)
472 3con_A GTPase NRAS; structural 86.7 0.34 1.2E-05 48.0 3.2 24 171-194 22-45 (190)
473 2eyu_A Twitching motility prot 86.6 0.38 1.3E-05 50.5 3.6 27 169-195 24-50 (261)
474 1ak2_A Adenylate kinase isoenz 86.6 0.38 1.3E-05 49.7 3.6 26 170-195 16-41 (233)
475 2x3d_A SSO6206; unknown functi 86.4 3 0.0001 34.4 7.7 60 1117-1176 5-73 (96)
476 1q3t_A Cytidylate kinase; nucl 86.3 0.4 1.4E-05 49.6 3.6 26 169-194 15-40 (236)
477 1fzq_A ADP-ribosylation factor 86.2 0.57 1.9E-05 46.0 4.5 26 168-193 14-39 (181)
478 1z2a_A RAS-related protein RAB 86.2 0.38 1.3E-05 46.3 3.2 23 171-193 6-28 (168)
479 2vp4_A Deoxynucleoside kinase; 86.1 0.28 9.5E-06 50.6 2.2 25 169-193 19-43 (230)
480 1a7j_A Phosphoribulokinase; tr 86.1 0.29 9.8E-06 52.4 2.3 26 169-194 4-29 (290)
481 1qvr_A CLPB protein; coiled co 86.0 2.2 7.6E-05 53.5 10.8 45 150-194 559-612 (854)
482 1g41_A Heat shock protein HSLU 86.0 0.42 1.4E-05 53.9 3.7 45 151-195 17-75 (444)
483 1svm_A Large T antigen; AAA+ f 85.9 0.4 1.4E-05 53.1 3.4 27 168-194 167-193 (377)
484 2wjg_A FEOB, ferrous iron tran 85.9 0.37 1.3E-05 47.7 2.9 23 171-193 8-30 (188)
485 2pjz_A Hypothetical protein ST 85.8 0.38 1.3E-05 50.4 3.1 23 171-193 31-53 (263)
486 2bbs_A Cystic fibrosis transme 85.7 0.4 1.4E-05 51.1 3.2 26 169-194 63-88 (290)
487 3nh6_A ATP-binding cassette SU 85.5 0.29 1E-05 52.5 2.1 25 169-193 79-103 (306)
488 1tue_A Replication protein E1; 85.5 0.38 1.3E-05 47.5 2.6 26 170-195 58-83 (212)
489 3kta_A Chromosome segregation 85.5 0.46 1.6E-05 46.8 3.4 23 171-193 27-49 (182)
490 1f6b_A SAR1; gtpases, N-termin 85.4 0.66 2.3E-05 46.3 4.6 32 161-192 15-47 (198)
491 2w0m_A SSO2452; RECA, SSPF, un 85.3 0.41 1.4E-05 49.4 3.1 26 170-195 23-48 (235)
492 1c1y_A RAS-related protein RAP 85.3 0.45 1.5E-05 45.8 3.2 22 172-193 5-26 (167)
493 1nlf_A Regulatory protein REPA 85.3 0.41 1.4E-05 51.0 3.1 27 169-195 29-55 (279)
494 3bh0_A DNAB-like replicative h 85.2 4.3 0.00015 43.8 11.3 52 169-224 67-118 (315)
495 1m7b_A RND3/RHOE small GTP-bin 85.1 0.48 1.6E-05 46.7 3.3 23 171-193 8-30 (184)
496 4gzl_A RAS-related C3 botulinu 85.1 0.5 1.7E-05 47.5 3.5 36 158-193 18-53 (204)
497 3lv8_A DTMP kinase, thymidylat 85.0 1.3 4.6E-05 45.3 6.7 36 170-206 27-62 (236)
498 2ocp_A DGK, deoxyguanosine kin 85.0 0.54 1.9E-05 48.8 3.9 24 171-194 3-26 (241)
499 1u8z_A RAS-related protein RAL 85.0 0.47 1.6E-05 45.6 3.2 24 171-194 5-28 (168)
500 2ged_A SR-beta, signal recogni 85.0 0.5 1.7E-05 46.9 3.4 25 169-193 47-71 (193)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-37 Score=388.54 Aligned_cols=585 Identities=15% Similarity=0.017 Sum_probs=353.7
Q ss_pred cceeeeccCCcccc----ccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccch
Q 000945 266 KLEILSLVDSNIEQ----LPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 341 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~----lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~ 341 (1212)
+++.|+++++.+.. +|.++++|.+|++++++.+ .+..+|.. ++++.+|++|++++|.+. +..+
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~-~~~~l~~~-~~~l~~L~~L~Ls~n~l~-----------~~~~ 117 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSG-FKCSASLTSLDLSRNSLS-----------GPVT 117 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS-CEEECCCC-CCCCTTCCEEECCSSEEE-----------EEGG
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCC-CcCCCchh-hccCCCCCEEECCCCcCC-----------CcCC
Confidence 78999999988764 7889999999999999999 67677777 899999999999999885 3345
Q ss_pred h--hhhcCCCCCcceeeeccccc-CCCCc--ccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceE
Q 000945 342 Q--ELKLLSHLTTLEIQICDAMI-LPKGL--FSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEE 416 (1212)
Q Consensus 342 ~--~L~~l~~L~~L~l~~~~~~~-~p~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~ 416 (1212)
. .+..+.+|++|+++.|.+.. .|... .+. .++.
T Consensus 118 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~------------------------------------------~L~~ 155 (768)
T 3rgz_A 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN------------------------------------------SLEV 155 (768)
T ss_dssp GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT------------------------------------------TCSE
T ss_pred ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC------------------------------------------CCCE
Confidence 5 88999999999999987653 23221 222 3344
Q ss_pred EEeccCCCcccccccC-CccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCC
Q 000945 417 LYLDEVPGIKNVLYDL-DIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYK 495 (1212)
Q Consensus 417 L~l~~~~~~~~~~~~l-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~ 495 (1212)
|.+....-.......+ ....+++|++|++.+|...... ....+++|++|+++++.... ..+.++.+++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~----~~~~l~~l~~ 224 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-------DVSRCVNLEFLDVSSNNFST----GIPFLGDCSA 224 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-------BCTTCTTCCEEECCSSCCCS----CCCBCTTCCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC-------CcccCCcCCEEECcCCcCCC----CCcccccCCC
Confidence 4443332221111110 0125678888888877422211 12467788888888774321 1223677888
Q ss_pred ccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccc
Q 000945 496 LKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQ 575 (1212)
Q Consensus 496 L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 575 (1212)
|++|++++| .+....+ ..+.++++|++|++++|.....+|. ..+++|++|+++++.-...++.
T Consensus 225 L~~L~Ls~n-~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~--------------~~l~~L~~L~L~~n~l~~~ip~- 287 (768)
T 3rgz_A 225 LQHLDISGN-KLSGDFS-RAISTCTELKLLNISSNQFVGPIPP--------------LPLKSLQYLSLAENKFTGEIPD- 287 (768)
T ss_dssp CCEEECCSS-CCCSCHH-HHTTTCSSCCEEECCSSCCEESCCC--------------CCCTTCCEEECCSSEEEESCCC-
T ss_pred CCEEECcCC-cCCCccc-HHHhcCCCCCEEECCCCcccCccCc--------------cccCCCCEEECcCCccCCccCH-
Confidence 888888875 4443322 4567788888888888764334443 2677888888877642222211
Q ss_pred cccchhhHhhhcccccccCCcceeccccccccccccccccc-ccccceeeccccccceecccCcccccCcCccEEEEecC
Q 000945 576 VKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVV-FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGC 654 (1212)
Q Consensus 576 ~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c 654 (1212)
.+.. +++|++|++++|.+.......+. .+++|+.|++++|
T Consensus 288 -------------------------------------~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n 328 (768)
T 3rgz_A 288 -------------------------------------FLSGACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSN 328 (768)
T ss_dssp -------------------------------------CSCTTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSS
T ss_pred -------------------------------------HHHhhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCC
Confidence 1111 36677777777755433222222 4677777777775
Q ss_pred CCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCC-ccceeecccCCccceeccCCCcCCCCCccEE
Q 000945 655 EKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFP-KVTFLKLWNLSELKTFYPGTHTSKWPMLKKL 733 (1212)
Q Consensus 655 ~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~-~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L 733 (1212)
.....+| ...++.+++|++|++++|.....++. ....++ +|+.|+++++.--..++.......+++|+.|
T Consensus 329 ~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~--------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 329 NFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPE--------SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp EEEEECC-HHHHTTCTTCCEEECCSSEEEECCCT--------THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred cccCcCC-HHHHhcCCCCCEEeCcCCccCccccH--------HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 4332433 23346677777777777652223321 122333 6777777666433333322221225667777
Q ss_pred EEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCc
Q 000945 734 EVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDES 813 (1212)
Q Consensus 734 ~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 813 (1212)
++++|.-...+|.. + ..+++|+.|++++|.+.+..+ .....+++|+.|++++|.+
T Consensus 400 ~L~~n~l~~~~p~~---l--------------------~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 400 YLQNNGFTGKIPPT---L--------------------SNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp ECCSSEEEEECCGG---G--------------------GGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccccccCHH---H--------------------hcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcc
Confidence 77776322233211 1 115666777776666665443 2234566677777776655
Q ss_pred cccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCC
Q 000945 814 ENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCE 893 (1212)
Q Consensus 814 ~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~ 893 (1212)
....+..+..+++|+.|+++.|.+....+ ..+..+++|+.|++++|.-... .|.+++.+++|++|++++|.
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIP-----SGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSC
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCC-----HHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCc
Confidence 53323336666677777776555543322 2234466677777766542222 25556666677777777766
Q ss_pred CcccccCCccccCCccEEeeccccCcccccch------------------------------------------------
Q 000945 894 NLINLVPSSASFKNLTTLELWYCQRLMNLVTS------------------------------------------------ 925 (1212)
Q Consensus 894 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~------------------------------------------------ 925 (1212)
..+.+|..+..+++|+.|++++|+-...+|..
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 66666666666677777777665433233321
Q ss_pred --------------------hhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCce
Q 000945 926 --------------------STAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYT 985 (1212)
Q Consensus 926 --------------------~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 985 (1212)
..++.+++|+.|++++|.....+|. ....+++|+.|+++++.--..+|....
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~Ls~N~l~g~ip~~l~- 677 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-------EIGSMPYLFILNLGHNDISGSIPDEVG- 677 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-------GGGGCTTCCEEECCSSCCCSCCCGGGG-
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-------HHhccccCCEEeCcCCccCCCCChHHh-
Confidence 1123456778888888774445552 344577888888888764446776555
Q ss_pred eecCCccEEEeccCCCccccCcCCcCCCccceEEeccCc
Q 000945 986 LKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGL 1024 (1212)
Q Consensus 986 ~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~~~~~~ 1024 (1212)
.+++|+.|+++++.....+|..+..+++|+.+++++|.
T Consensus 678 -~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 678 -DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp -GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred -CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 34788888888887777788888888888888887664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.7e-36 Score=376.91 Aligned_cols=612 Identities=14% Similarity=0.028 Sum_probs=330.4
Q ss_pred cceeeeccCCcccc-ccH--HHHhhcccccccccCCCCCc-ccchhHhhccccCceeecCCCcceeeeeccccCCCccch
Q 000945 266 KLEILSLVDSNIEQ-LPE--EMAQLTQLRLFDLSGCSKLK-VIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASL 341 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~-lp~--~i~~L~~L~~L~Ls~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~ 341 (1212)
+|++|++++|.+.. +|. .++++.+|++|++++| .+. .+|..++.++.+|++|++++|.+. +..+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~ 168 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSIS-----------GANV 168 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSSCCE-----------EETH
T ss_pred CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCCccC-----------CcCC
Confidence 67788888877763 566 7778888888888877 343 445543467778888888877765 2233
Q ss_pred hh---hhcCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEE
Q 000945 342 QE---LKLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELY 418 (1212)
Q Consensus 342 ~~---L~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~ 418 (1212)
.. +..+.+|++|+++.|.+........+.+|+.+.+........ +. . ...++.++.|.
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~-~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-----------------IP-F-LGDCSALQHLD 229 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-----------------CC-B-CTTCCSCCEEE
T ss_pred hhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-----------------Cc-c-cccCCCCCEEE
Confidence 33 566777777777777655433323344444443211100000 00 0 01123444444
Q ss_pred eccCCCcccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCcccc-CCcc
Q 000945 419 LDEVPGIKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESF-YKLK 497 (1212)
Q Consensus 419 l~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l-~~L~ 497 (1212)
+.+..-...+...+. .+++|++|++++|.....++. ..+++|++|+++++.-. ...|..++.. ++|+
T Consensus 230 Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 230 ISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPP-------LPLKSLQYLSLAENKFT---GEIPDFLSGACDTLT 297 (768)
T ss_dssp CCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCC-------CCCTTCCEEECCSSEEE---ESCCCCSCTTCTTCS
T ss_pred CcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCc-------cccCCCCEEECcCCccC---CccCHHHHhhcCcCC
Confidence 443332222222222 445555555555432221111 13445555555544211 1123333332 5555
Q ss_pred EEEEecCCCCC-ccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCccccccccc
Q 000945 498 IIKVRNCDKLK-NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQV 576 (1212)
Q Consensus 498 ~L~L~~c~~l~-~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 576 (1212)
+|++++| .+. .+| ..++++++|++|++++|.....+|. ..+..+++|++|+++++.-...
T Consensus 298 ~L~Ls~n-~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~ip~-----------~~l~~l~~L~~L~Ls~n~l~~~----- 358 (768)
T 3rgz_A 298 GLDLSGN-HFYGAVP--PFFGSCSLLESLALSSNNFSGELPM-----------DTLLKMRGLKVLDLSFNEFSGE----- 358 (768)
T ss_dssp EEECCSS-EEEECCC--GGGGGCTTCCEEECCSSEEEEECCH-----------HHHTTCTTCCEEECCSSEEEEC-----
T ss_pred EEECcCC-cCCCccc--hHHhcCCCccEEECCCCcccCcCCH-----------HHHhcCCCCCEEeCcCCccCcc-----
Confidence 5555553 222 222 2345555555555555442223332 1134455555555554421111
Q ss_pred ccchhhHhhhcccccccCCcceeccccccccccccccccccc-ccceeeccccccceecccCcccccCcCccEEEEecCC
Q 000945 577 KTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFP-NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCE 655 (1212)
Q Consensus 577 ~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~ 655 (1212)
+...+..++ +|+.|++++|.+.......+....+++|+.|++++|.
T Consensus 359 ---------------------------------~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 359 ---------------------------------LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp ---------------------------------CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred ---------------------------------ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 112223334 7888888888655432222211226778888888874
Q ss_pred CccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEE
Q 000945 656 KLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEV 735 (1212)
Q Consensus 656 ~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i 735 (1212)
....+|.. ++++++|++|++++|..-..++ .....+++|+.|++.++.-...++.. ...+++|+.|++
T Consensus 406 l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L 473 (768)
T 3rgz_A 406 FTGKIPPT--LSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLIL 473 (768)
T ss_dssp EEEECCGG--GGGCTTCCEEECCSSEEESCCC--------GGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEEC
T ss_pred cccccCHH--HhcCCCCCEEECcCCcccCccc--------HHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCceEEEe
Confidence 43343333 5778888888888876222222 13345778888888877644343322 225778888888
Q ss_pred ecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCcc-
Q 000945 736 YGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE- 814 (1212)
Q Consensus 736 ~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~- 814 (1212)
++|.-...+|.. + ..+++|+.|++++|.+.+..+ .....+++|+.|++++|.+.
T Consensus 474 ~~N~l~~~~p~~---l--------------------~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 474 DFNDLTGEIPSG---L--------------------SNCTNLNWISLSNNRLTGEIP--KWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CSSCCCSCCCGG---G--------------------GGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEE
T ss_pred cCCcccCcCCHH---H--------------------hcCCCCCEEEccCCccCCcCC--hHHhcCCCCCEEECCCCcccC
Confidence 887433333211 1 116788888888888776544 23456788888888887776
Q ss_pred ccchHHHhhcCccceeEEEccceeEeccccchh-h----------------------------------------ccccc
Q 000945 815 NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIV-E----------------------------------------HAEML 853 (1212)
Q Consensus 815 ~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~-~----------------------------------------~~~~l 853 (1212)
.+|. .+..+++|+.|+++.|.+....|..-.. . .+..+
T Consensus 529 ~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 4444 4778888888888866665333321000 0 00000
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
+.+..+++.. ..+....|..+..+++|+.|++++|...+.+|..++.+++|+.|++++|.--..+| ..++.+++
T Consensus 608 ~~~~~~~l~~----~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~ 681 (768)
T 3rgz_A 608 STRNPCNITS----RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRG 681 (768)
T ss_dssp GGTCCSCTTS----CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTT
T ss_pred cccccccccc----ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCC
Confidence 1111111111 11222335567778889999999988778888888899999999999864333555 55688889
Q ss_pred ccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCCcCCC
Q 000945 934 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTP 1013 (1212)
Q Consensus 934 L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~ 1013 (1212)
|+.|++++|.....+|. ....+++|+.|++++++--..+|.... +.++....+.++|.+--.|.
T Consensus 682 L~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~l------ 745 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQ-------AMSALTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYPL------ 745 (768)
T ss_dssp CCEEECCSSCCEECCCG-------GGGGCCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTTS------
T ss_pred CCEEECCCCcccCcCCh-------HHhCCCCCCEEECcCCcccccCCCchh---hccCCHHHhcCCchhcCCCC------
Confidence 99999999885556663 334578888889988865556665532 34555556677776654332
Q ss_pred ccceEEeccCcccccccCcHHHHHHH
Q 000945 1014 RLREVRQNWGLYKGCWEGDLNTTIQQ 1039 (1212)
Q Consensus 1014 ~L~~l~~~~~~~~w~~~~~~~~~i~~ 1039 (1212)
. -|-..++.+|.++ +|++.
T Consensus 746 --~-~C~~~~~~~~~~~----~~~~~ 764 (768)
T 3rgz_A 746 --P-RCDPSNADGYAHH----QRSHH 764 (768)
T ss_dssp --C-CCCSCC----------------
T ss_pred --c-CCCCCccCCCCCC----CCccc
Confidence 1 2344567789888 45544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-31 Score=336.24 Aligned_cols=360 Identities=16% Similarity=0.141 Sum_probs=229.2
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccc-cccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESG-EEAT 696 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~-~~~~ 696 (1212)
++|+.|++++|.+..+....+. .+++|++|++++| .+..+++.. ++.+++|++|+++++..-..+...... ....
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYN-NIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSC-CBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred CCCCEEECCCCCcCccCccccc--CcccccEeeCCCC-ccCccChhh-hcCCCCccEEeccchhhhcccccccccccChh
Confidence 4588888888876655443332 5788888888886 455554433 477888888888875422111100000 0001
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCC-cccccccccchhhccCCCCCCccccceeeeeeecc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDK-VKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTS 775 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~-L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 775 (1212)
....+++|++|++.++. +..+.... ...+++|+.|++++|.. +..++.. .+.. ...+
T Consensus 324 ~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~--~f~~------------------~~~~ 381 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDND-IPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNE--TFVS------------------LAHS 381 (680)
T ss_dssp TTTTCTTCCEEECCSCC-BCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTT--TTGG------------------GTTS
T ss_pred hcccCCCCCEEECCCCc-cCCCChhH-hccccCCcEEECCCCchhhhhcchh--hhcc------------------cccC
Confidence 23357788888887764 22222221 23578888888887742 2232110 0000 0025
Q ss_pred cceeeeeccccccccccccCcccccccceEeEeecCCcc-ccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 776 KLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESE-NFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
+|+.|++++|.+..+.+ .....+++|+.|++++|.+. .+|...+..+++|+.|+++.|.+..+.+ ..+..++
T Consensus 382 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~ 454 (680)
T 1ziw_A 382 PLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-----NSFALVP 454 (680)
T ss_dssp CCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-----TTTTTCT
T ss_pred cCceEECCCCCCCeECh--hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-----hhhhcCc
Confidence 78888888888887764 33456788888888887775 4666668888888888888666766543 2344578
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC-CccccCCccEEeeccccCcccccch-------h
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP-SSASFKNLTTLELWYCQRLMNLVTS-------S 926 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~-------~ 926 (1212)
+|+.|+++++.- ..+ ...|..+..+++|+.|++++|. ++.+|+ .+..+++|+.|++++| .++.++.. .
T Consensus 455 ~L~~L~l~~n~l-~~~-~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 455 SLQRLMLRRVAL-KNV-DSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIY 530 (680)
T ss_dssp TCCEEECTTSCC-BCT-TCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCC
T ss_pred ccccchhccccc-ccc-ccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcch
Confidence 888888887642 111 1225667788888888888865 445554 3677888888888885 56655322 1
Q ss_pred hhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccC
Q 000945 927 TAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFS 1006 (1212)
Q Consensus 927 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp 1006 (1212)
.+..+++|+.|++++|. +..+|.. ....+++|+.|+++++ .++.+|..... .+++|+.|+++++ .+..++
T Consensus 531 ~~~~l~~L~~L~L~~N~-l~~i~~~------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNG-FDEIPVE------VFKDLFELKIIDLGLN-NLNTLPASVFN-NQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTT------TTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECTTS-CCCBCC
T ss_pred hhcCCCCCCEEECCCCC-CCCCCHH------HcccccCcceeECCCC-CCCcCCHhHhC-CCCCCCEEECCCC-cCCccC
Confidence 25677888888888875 5555521 2344678888888776 57788776432 3588888888887 566666
Q ss_pred cCC-c-CCCccceEEeccCc
Q 000945 1007 HRV-L-STPRLREVRQNWGL 1024 (1212)
Q Consensus 1007 ~~~-~-~~~~L~~l~~~~~~ 1024 (1212)
... . .+++|+.+++++|.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCC
T ss_pred hhHhcccccccCEEEccCCC
Confidence 543 2 46788888887654
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6e-31 Score=325.43 Aligned_cols=302 Identities=17% Similarity=0.168 Sum_probs=164.4
Q ss_pred ccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccccc
Q 000945 619 NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTT 698 (1212)
Q Consensus 619 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 698 (1212)
+|+.|++++|.+..+....+. .+++|++|++++| .++.+|+. ++.+++|++|++++|. +..+.. ...
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~lp~~--l~~l~~L~~L~l~~n~-l~~~~~-------~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFH--CFSGLQELDLTAT-HLSELPSG--LVGLSTLKKLVLSANK-FENLCQ-------ISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTT--TCTTCSEEECTTS-CCSCCCSS--CCSCTTCCEEECTTCC-CSBGGG-------GCG
T ss_pred ceeEEEeecCccCccCHHHhc--cccCCCEEeccCC-ccCCCChh--hcccccCCEEECccCC-cCcCch-------hhh
Confidence 566666666655544433332 4566666666665 45555443 4566666666666664 333311 112
Q ss_pred ccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccce
Q 000945 699 FVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLE 778 (1212)
Q Consensus 699 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 778 (1212)
..+++|++|++.++.....++... ... +++|+
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~-~~~-----------------------------------------------l~~L~ 353 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGC-LEN-----------------------------------------------LENLR 353 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSST-TTT-----------------------------------------------CTTCC
T ss_pred hccCcCCEEECCCCCcccccchhh-hhc-----------------------------------------------cCcCC
Confidence 234444444444443221221110 112 45566
Q ss_pred eeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccce
Q 000945 779 ELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKS 858 (1212)
Q Consensus 779 ~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~ 858 (1212)
+|++++|.+..+.........+++|++|++++|.+..+++..+..+++|+.|+++.|.+....+.. .+..+++|+.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~ 429 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS----PFQNLHLLKV 429 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC----TTTTCTTCCE
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch----hhhCcccCCE
Confidence 666666555554322233445666777777666666665555666777777777755555443211 1334667777
Q ss_pred EeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc-cc--CCccccCCccEEeeccccCcccccchhhhccccccc
Q 000945 859 LKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN-LV--PSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLT 935 (1212)
Q Consensus 859 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 935 (1212)
|++++|.- .. ..+..+..+++|++|++++|...+. +| ..+..+++|+.|++++| .++.+++ ..+..+++|+
T Consensus 430 L~l~~n~l-~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~ 503 (606)
T 3t6q_A 430 LNLSHSLL-DI---SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMN 503 (606)
T ss_dssp EECTTCCC-BT---TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCC
T ss_pred EECCCCcc-CC---cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCC
Confidence 77776542 21 1244566677777777777654431 22 33566777777777775 4555432 3346667777
Q ss_pred EEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCC
Q 000945 936 KLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPK 1001 (1212)
Q Consensus 936 ~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~ 1001 (1212)
.|++++|......+. ....+++| .|+++++. +..++..... .+++|++|++++||-
T Consensus 504 ~L~Ls~N~l~~~~~~-------~l~~l~~L-~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIE-------ALSHLKGI-YLNLASNH-ISIILPSLLP-ILSQQRTINLRQNPL 559 (606)
T ss_dssp EEECCSSCCCGGGGG-------GGTTCCSC-EEECCSSC-CCCCCGGGHH-HHHTSSEEECTTCCE
T ss_pred EEECCCCccCcCChh-------HhCccccc-EEECcCCc-ccccCHhhcc-cCCCCCEEeCCCCCc
Confidence 777777753322221 22335666 67777763 4555443222 357889999988874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.3e-31 Score=327.71 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=55.8
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcC
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 347 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l 347 (1212)
+.++.++..++.+|..+. .++++|++++| .+..++...+.++.+|++|++++|.+. ...+..+.++
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~i~~~~~~~l 79 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIE-----------TIEDKAWHGL 79 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCC-----------EECTTTTTTC
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCccc-----------ccCHHHhhch
Confidence 456677777777776554 57777777777 677777655777777777777777664 2234456677
Q ss_pred CCCCcceeeecccccC
Q 000945 348 SHLTTLEIQICDAMIL 363 (1212)
Q Consensus 348 ~~L~~L~l~~~~~~~~ 363 (1212)
.+|++|+++.|.+..+
T Consensus 80 ~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSF 95 (606)
T ss_dssp TTCCEEECTTCCCCCC
T ss_pred hhcCEeECCCCccccc
Confidence 7777777777665544
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=6.9e-30 Score=320.39 Aligned_cols=99 Identities=18% Similarity=0.292 Sum_probs=75.1
Q ss_pred cceeeeccCCccccccH-HHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.+++|++++|.+..+|. .|+++.+|++|++++| .+..++++.++++.+|++|++++|.+. ......+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~l~~~~~ 93 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELS-----------QLSDKTF 93 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCC-----------CCCTTTT
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccC-----------ccChhhh
Confidence 68889999988888865 6888889999999888 787777767888999999999888774 1122347
Q ss_pred hcCCCCCcceeeecccccCCCCc--ccccceEEe
Q 000945 345 KLLSHLTTLEIQICDAMILPKGL--FSKKLERYK 376 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~~--~~~~L~~l~ 376 (1212)
..+.+|++|+++.|.+..++... .+.+|+.+.
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 78888888888888877766542 445565554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.4e-30 Score=322.09 Aligned_cols=536 Identities=16% Similarity=0.127 Sum_probs=335.4
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcC
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 347 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l 347 (1212)
+.++.++..+..+|..+.. ++++|++++| .+..+++..|.++.+|++|++++|.+. ...+..+..+
T Consensus 15 ~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~~~~~~~~~l 80 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPN--STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIY-----------WIHEDTFQSQ 80 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT--TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCC-----------EECTTTTTTC
T ss_pred ceEECCCCCcccCcCCCCC--cCcEEEccCC-ccCcCChhHhccCccceEEECCCCccc-----------eeChhhccCc
Confidence 4567777777778776654 6788888888 777776655888888888888888765 3335567777
Q ss_pred CCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCccc
Q 000945 348 SHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKN 427 (1212)
Q Consensus 348 ~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~~~ 427 (1212)
.+|++|++++|.+..++...
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~------------------------------------------------------------ 100 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETA------------------------------------------------------------ 100 (606)
T ss_dssp TTCCEEECTTCCCSEECTTT------------------------------------------------------------
T ss_pred cccCeeeCCCCcccccChhh------------------------------------------------------------
Confidence 88888888777654322110
Q ss_pred ccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCC
Q 000945 428 VLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKL 507 (1212)
Q Consensus 428 ~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l 507 (1212)
+ ..+++|++|++.+|. +..+.. .....+++|++|+++++. +..+ ....+..+++|++|+++++ .+
T Consensus 101 ----~--~~l~~L~~L~L~~n~-i~~l~~----~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~~l~~L~~L~L~~n-~l 165 (606)
T 3t6q_A 101 ----L--SGPKALKHLFFIQTG-ISSIDF----IPLHNQKTLESLYLGSNH-ISSI--KLPKGFPTEKLKVLDFQNN-AI 165 (606)
T ss_dssp ----T--SSCTTCCEEECTTSC-CSCGGG----SCCTTCTTCCEEECCSSC-CCCC--CCCTTCCCTTCCEEECCSS-CC
T ss_pred ----h--cccccccEeeccccC-cccCCc----chhccCCcccEEECCCCc-cccc--CcccccCCcccCEEEcccC-cc
Confidence 0 145566666666652 221111 113456666666666652 2211 1122334788888888874 56
Q ss_pred CccCchhhhccCCCcc--EEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhh
Q 000945 508 KNIFSFSFVRGLPQLQ--TLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTR 585 (1212)
Q Consensus 508 ~~l~~~~~~~~L~~L~--~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 585 (1212)
+.+++ ..+..+++|+ .|+++++. +..++. ......+|+.|++.++..+......
T Consensus 166 ~~~~~-~~~~~l~~L~~l~L~l~~n~-l~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~---------- 221 (606)
T 3t6q_A 166 HYLSK-EDMSSLQQATNLSLNLNGND-IAGIEP------------GAFDSAVFQSLNFGGTQNLLVIFKG---------- 221 (606)
T ss_dssp CEECH-HHHHTTTTCCSEEEECTTCC-CCEECT------------TTTTTCEEEEEECTTCSCHHHHHHH----------
T ss_pred cccCh-hhhhhhcccceeEEecCCCc-cCccCh------------hHhhhccccccccCCchhHHHHhhh----------
Confidence 66643 4567788888 77888765 444443 2334457788888776543321110
Q ss_pred hcccccccCCcceecccccccccccccccccccccceeecccc-cc--ceecccCcccccCcCccEEEEecCCCccccCc
Q 000945 586 LKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI-ST--EKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFP 662 (1212)
Q Consensus 586 l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~-~l--~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 662 (1212)
+.. ..++.+.+..+ .. ..+....+....-.+|+.|++++| .+..+++
T Consensus 222 l~~-----------------------------~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~ 271 (606)
T 3t6q_A 222 LKN-----------------------------STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISS 271 (606)
T ss_dssp TTT-----------------------------CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCT
T ss_pred ccc-----------------------------cchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCH
Confidence 000 01111221111 00 000001111001126777888775 5555554
Q ss_pred hhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcc
Q 000945 663 SSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVK 742 (1212)
Q Consensus 663 ~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 742 (1212)
.. ++.+++|++|++++|. +..++. ... .+++|++|++++|. +.
T Consensus 272 ~~-~~~l~~L~~L~l~~n~-l~~lp~--------~l~--------------------------~l~~L~~L~l~~n~-l~ 314 (606)
T 3t6q_A 272 NT-FHCFSGLQELDLTATH-LSELPS--------GLV--------------------------GLSTLKKLVLSANK-FE 314 (606)
T ss_dssp TT-TTTCTTCSEEECTTSC-CSCCCS--------SCC--------------------------SCTTCCEEECTTCC-CS
T ss_pred HH-hccccCCCEEeccCCc-cCCCCh--------hhc--------------------------ccccCCEEECccCC-cC
Confidence 33 4677788888887775 444421 111 34556666666652 33
Q ss_pred cccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccc--hHH
Q 000945 743 IFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFR--IGF 820 (1212)
Q Consensus 743 ~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p--~~~ 820 (1212)
.+++. .+ ..+++|+.|++++|.+....+. .....+++|++|++++|.+..++ +..
T Consensus 315 ~~~~~--~~--------------------~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 315 NLCQI--SA--------------------SNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp BGGGG--CG--------------------GGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred cCchh--hh--------------------hccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCcchh
Confidence 22110 00 1157788888877766532211 23457899999999999888876 555
Q ss_pred HhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC
Q 000945 821 LERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP 900 (1212)
Q Consensus 821 l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 900 (1212)
+..+++|+.|+++.|.+..+++ ..+..+++|+.|++++|.-.... .+..+..+++|++|++++|......|.
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKT-----EAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECT-----TTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCCCCCEEECCCCcCCcCCH-----HHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCcCHH
Confidence 8899999999999777777654 23455899999999997532222 123478899999999999877666677
Q ss_pred CccccCCccEEeeccccCccc--ccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCccc
Q 000945 901 SSASFKNLTTLELWYCQRLMN--LVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTS 978 (1212)
Q Consensus 901 ~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 978 (1212)
.+..+++|++|++++|+ +.. ++....+..+++|+.|++++|. +..++. .....+++|+.|+++++. +..
T Consensus 444 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~Ls~N~-l~~ 514 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ------HAFTSLKMMNHVDLSHNR-LTS 514 (606)
T ss_dssp TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT------TTTTTCTTCCEEECCSSC-CCG
T ss_pred HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccCh------hhhccccCCCEEECCCCc-cCc
Confidence 78889999999999974 443 2333557889999999999997 444431 123457999999999995 555
Q ss_pred ccCCCceeecCCccEEEeccCCCccccCcCCcCCCccceEEeccCcc
Q 000945 979 FCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 979 l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~~~~~~~ 1025 (1212)
++..... .+++| +|++++|.-....|..+..+++|+.+++++|..
T Consensus 515 ~~~~~l~-~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 515 SSIEALS-HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp GGGGGGT-TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CChhHhC-ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 4433222 35888 999999976554555567789999999998764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.7e-30 Score=318.35 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=77.9
Q ss_pred ccceeeeccCCccccccH-HHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhh
Q 000945 265 KKLEILSLVDSNIEQLPE-EMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQE 343 (1212)
Q Consensus 265 ~~Lr~L~ls~~~i~~lp~-~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~ 343 (1212)
..+++|++++|.+..++. .|+++.+|++|++++| .+..+++..|.++.+|++|++++|.+. ...+..
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~-----------~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQ-----------SFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC-----------CCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCccc-----------ccChhh
Confidence 379999999999998865 8999999999999999 899987777999999999999999885 334677
Q ss_pred hhcCCCCCcceeeecccccCCC
Q 000945 344 LKLLSHLTTLEIQICDAMILPK 365 (1212)
Q Consensus 344 L~~l~~L~~L~l~~~~~~~~p~ 365 (1212)
+.++.+|++|+++.|.+..++.
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSS
T ss_pred cCCcccCCEEEccCCccccccc
Confidence 8899999999999998776653
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=313.23 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=53.5
Q ss_pred cceeeeccCCccccc-cHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.+++|++++|.|..+ |.+|+++.+|++|++++|..+..++++.+.++.+|++|++++|.+. ...+..+
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-----------~~~p~~~ 93 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-----------FLHPDAF 93 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-----------EECTTSS
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-----------ccCHhHc
Confidence 566677777766665 5566667777777777664455564444667777777777766654 2234556
Q ss_pred hcCCCCCcceeeecccc
Q 000945 345 KLLSHLTTLEIQICDAM 361 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~ 361 (1212)
..+.+|++|+++.|.+.
T Consensus 94 ~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLS 110 (844)
T ss_dssp CSCSSCCCEECTTCCCS
T ss_pred cCCcccCEeeCcCCCCC
Confidence 66666666666666544
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=7.4e-27 Score=298.09 Aligned_cols=533 Identities=16% Similarity=0.138 Sum_probs=321.9
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccc-hhhhhc
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNAS-LQELKL 346 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~-~~~L~~ 346 (1212)
++.+.+++++..+|. -..++++|+|++| .+..++...+.++.+|++|++++|... ..+ +..+.+
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~-----------~~i~~~~f~~ 71 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTP-----------LTIDKEAFRN 71 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCC-----------CEECTTTTSS
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCc-----------cccCHHHhcC
Confidence 466788889999997 5679999999999 788886666999999999999999542 222 567889
Q ss_pred CCCCCcceeeecccccC-CCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCc
Q 000945 347 LSHLTTLEIQICDAMIL-PKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 425 (1212)
Q Consensus 347 l~~L~~L~l~~~~~~~~-p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~ 425 (1212)
+.+|++|+++.|.+..+ |..+.
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~--------------------------------------------------------- 94 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQ--------------------------------------------------------- 94 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSC---------------------------------------------------------
T ss_pred CCCCCEEECCCCcCcccCHhHcc---------------------------------------------------------
Confidence 99999999998877654 22220
Q ss_pred ccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCC
Q 000945 426 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 505 (1212)
Q Consensus 426 ~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~ 505 (1212)
.+++|++|++++|.....++.. .....+++|+.|+++++.. ..+. .+..++.+++|++|+|+++
T Consensus 95 ----------~l~~L~~L~Ls~n~l~~~~~~~---~~~~~L~~L~~L~Ls~N~l-~~~~-~~~~~~~L~~L~~L~Ls~N- 158 (844)
T 3j0a_A 95 ----------GLFHLFELRLYFCGLSDAVLKD---GYFRNLKALTRLDLSKNQI-RSLY-LHPSFGKLNSLKSIDFSSN- 158 (844)
T ss_dssp ----------SCSSCCCEECTTCCCSSCCSTT---CCCSSCSSCCEEEEESCCC-CCCC-CCGGGGTCSSCCEEEEESS-
T ss_pred ----------CCcccCEeeCcCCCCCcccccC---ccccccCCCCEEECCCCcc-cccc-cchhHhhCCCCCEEECCCC-
Confidence 2334444444443211111110 0022344444444444321 1100 0122445555555555553
Q ss_pred CCCccCchhhhccC--CCccEEEEccCcCcchhhcccccCCccCCccCceecc------cccEEecccCCcccccccccc
Q 000945 506 KLKNIFSFSFVRGL--PQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFS------QLHSLTLKFLPQLTSFYSQVK 577 (1212)
Q Consensus 506 ~l~~l~~~~~~~~L--~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~l~~~~~~~~ 577 (1212)
.+..+.+ ..+..+ ++|+.|+++++......+. .+..++ .|+.|+++++.--...+....
T Consensus 159 ~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 159 QIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSV------------DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp CCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCC------------CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred cCCeeCH-HHcccccCCccceEECCCCcccccccc------------chhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 3333321 223333 4555555555442222221 111111 255555554321111100000
Q ss_pred cchhhHhhhcccccccCCcc----eeccccccccc-ccccccccccccceeeccccccceecccCcccccCcCccEEEEe
Q 000945 578 TSAASQTRLKELSTHTLPRE----VILEDECDTLM-PFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVH 652 (1212)
Q Consensus 578 ~~~~~~~~l~~L~~~~l~~~----~~~~~~~~~l~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~ 652 (1212)
... ....+..+ .+... ........... ..+.. ...++|+.|++++|.+..+....+. .+++|+.|+|+
T Consensus 226 ~~l-~~~~l~~L---~l~~~~~~~~~~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~ 298 (844)
T 3j0a_A 226 NAI-SKSQAFSL---ILAHHIMGAGFGFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLA 298 (844)
T ss_dssp GTS-CSCCBSEE---ECCSSCCBCSSSCSSSTTGGGTTTTT-TTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEE
T ss_pred hhc-Ccccccce---ecccccccccccccccCCCChhhhhc-cccCCccEEECCCCcccccChhhhh--cCCCCCEEECC
Confidence 000 00000000 00000 00000000000 01111 1247899999999977766544443 68999999999
Q ss_pred cCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccE
Q 000945 653 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKK 732 (1212)
Q Consensus 653 ~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~ 732 (1212)
+| .+..+++.. ++.+++|++|++++|. +..+... ....+++|+.|++.++ .+..+.... ...+++|+.
T Consensus 299 ~n-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~ 366 (844)
T 3j0a_A 299 YN-KINKIADEA-FYGLDNLQVLNLSYNL-LGELYSS-------NFYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQT 366 (844)
T ss_dssp SC-CCCEECTTT-TTTCSSCCEEEEESCC-CSCCCSC-------SCSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCE
T ss_pred CC-cCCCCChHH-hcCCCCCCEEECCCCC-CCccCHH-------HhcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCE
Confidence 96 566665543 5889999999999997 5555322 3445899999999987 355544332 236899999
Q ss_pred EEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCC
Q 000945 733 LEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDE 812 (1212)
Q Consensus 733 L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 812 (1212)
|++++| .+..++ .+++|+.|++++|.+..++. ...+++.|++++|.
T Consensus 367 L~Ls~N-~l~~i~---------------------------~~~~L~~L~l~~N~l~~l~~------~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 367 LDLRDN-ALTTIH---------------------------FIPSIPDIFLSGNKLVTLPK------INLTANLIHLSENR 412 (844)
T ss_dssp EEEETC-CSCCCS---------------------------SCCSCSEEEEESCCCCCCCC------CCTTCCEEECCSCC
T ss_pred EECCCC-CCCccc---------------------------CCCCcchhccCCCCcccccc------cccccceeecccCc
Confidence 999997 455442 16789999999999987753 25689999999998
Q ss_pred ccccchH-HHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhc--cCCCCccccCcccEEEE
Q 000945 813 SENFRIG-FLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWK--QDSKLDSITENLESLEV 889 (1212)
Q Consensus 813 ~~~~p~~-~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~~l~~L~~L~l 889 (1212)
+..++.. .+..+++|+.|+++.|.++.+++.. .+..+++|+.|+++++. +..++. ..+..+..+++|+.|++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQ----TPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS----SSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCchhhhhhcCCccceeeCCCCccccccccc----ccccCCccccccCCCCc-cccccccccchhhhcCcccccEEEC
Confidence 8887643 3568999999999988887654321 12236899999999864 333321 12345778899999999
Q ss_pred ecCCCcccccC-CccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhh
Q 000945 890 WWCENLINLVP-SSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWV 968 (1212)
Q Consensus 890 ~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L 968 (1212)
++|. ++.+|+ .+..+++|+.|++++| +++.+|+..+. ++|+.|++++|. +..++. ..+++|+.|
T Consensus 488 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~---~~L~~L~Ls~N~-l~~~~~---------~~~~~L~~l 552 (844)
T 3j0a_A 488 NHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP---ANLEILDISRNQ-LLAPNP---------DVFVSLSVL 552 (844)
T ss_dssp CHHH-HTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC---SCCCEEEEEEEC-CCCCCS---------CCCSSCCEE
T ss_pred CCCc-ccccChhHccchhhhheeECCCC-CCCccChhhhh---ccccEEECCCCc-CCCCCh---------hHhCCcCEE
Confidence 9984 555554 4678899999999995 78888754443 789999999887 444332 125678888
Q ss_pred hhccCC
Q 000945 969 SLERLE 974 (1212)
Q Consensus 969 ~l~~~~ 974 (1212)
++.++|
T Consensus 553 ~l~~Np 558 (844)
T 3j0a_A 553 DITHNK 558 (844)
T ss_dssp EEEEEC
T ss_pred EecCCC
Confidence 888765
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=284.46 Aligned_cols=486 Identities=16% Similarity=0.154 Sum_probs=271.2
Q ss_pred cceeeeccCCcccccc-HHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.++.|++++|.+..++ ..|..+.+|++|++++| .+..++.+.+.++.+|++|++++|.+. ...+..+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~ 96 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ-----------SLALGAF 96 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC-----------EECTTTT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCC-----------ccCHhhh
Confidence 5777888888777774 46777888888888888 677777666778888888888877764 2223556
Q ss_pred hcCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCC
Q 000945 345 KLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPG 424 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~ 424 (1212)
..+.+|++|+++.|.+..++...
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~--------------------------------------------------------- 119 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFP--------------------------------------------------------- 119 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCS---------------------------------------------------------
T ss_pred cCccccccccccccccccCCCcc---------------------------------------------------------
Confidence 77777777777777655544321
Q ss_pred cccccccCCccccCCCcEEEeecCCCce-eeecCcchhccccccccceeecccccccceeecccCCccccCCc----cEE
Q 000945 425 IKNVLYDLDIEGFLQLKHLHVQNNPFIL-FIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKL----KII 499 (1212)
Q Consensus 425 ~~~~~~~l~~~~l~~L~~L~l~~~~~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L----~~L 499 (1212)
+..+++|++|++++|.... .+|.. ...+++|++|+++++. +..+ .+..++.+.+| +.|
T Consensus 120 ---------~~~l~~L~~L~L~~n~l~~~~lp~~-----~~~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 120 ---------IGHLKTLKELNVAHNLIQSFKLPEY-----FSNLTNLEHLDLSSNK-IQSI--YCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp ---------CTTCTTCCEEECCSSCCCCCCCCGG-----GGGCTTCCEEECTTSC-CCEE--CGGGGHHHHTCTTCCCEE
T ss_pred ---------ccccccccEEecCCCccceecChhh-----hcccCCCCEEeCcCCc-ccee--cHHHccchhccchhhhhc
Confidence 1145556666665552111 01111 3345566666666552 2221 12334455555 666
Q ss_pred EEecCCCCCccCchhhhccCCCccEEEEccCcC-cchhhcccccCCccCCccCceecccccEEecc--cCCc---ccccc
Q 000945 500 KVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKN-MKEIFTVGRENDVDCHEVDKIEFSQLHSLTLK--FLPQ---LTSFY 573 (1212)
Q Consensus 500 ~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~---l~~~~ 573 (1212)
+++++ .+..+++ ..+..+ +|++|+++++.. ...++. .+..+++++.+.+. .... +..+.
T Consensus 183 ~l~~n-~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~------------~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 183 DLSLN-PMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKT------------CIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp ECTTC-CCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHH------------HHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred ccCCC-CceecCH-HHhccC-cceeEecccccccccchhh------------hhcCccccceeeeccccccCchhhhhcc
Confidence 66663 4555543 222332 677777766421 111111 22233333322221 1111 11100
Q ss_pred cccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeecccc-ccceecccCcccccCcCccEEEEe
Q 000945 574 SQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVH 652 (1212)
Q Consensus 574 ~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~L~ 652 (1212)
.. .+..+.. -.++.++++++ .+.......+ ..+++|+.|+++
T Consensus 248 ~~----------------------------------~~~~l~~-l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~ 290 (570)
T 2z63_A 248 KS----------------------------------ALEGLCN-LTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLV 290 (570)
T ss_dssp TT----------------------------------TTGGGGG-SEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEE
T ss_pred hh----------------------------------hhccccc-cchhhhhhhcchhhhhhchhhh--cCcCcccEEEec
Confidence 00 0000000 12444444444 2222111111 245667777776
Q ss_pred cCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccE
Q 000945 653 GCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKK 732 (1212)
Q Consensus 653 ~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~ 732 (1212)
+| .+..+|.. +..+ +|++|++++|. +..++. ..+++|+.|.+.++.....++. ..+++|+.
T Consensus 291 ~~-~l~~l~~~--~~~~-~L~~L~l~~n~-~~~l~~----------~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~ 351 (570)
T 2z63_A 291 SV-TIERVKDF--SYNF-GWQHLELVNCK-FGQFPT----------LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEF 351 (570)
T ss_dssp SC-EECSCCBC--CSCC-CCSEEEEESCB-CSSCCB----------CBCSSCCEEEEESCBSCCBCCC----CBCTTCCE
T ss_pred Cc-cchhhhhh--hccC-CccEEeeccCc-ccccCc----------ccccccCEEeCcCCcccccccc----ccCCCCCE
Confidence 65 34454443 4455 77777777665 333321 2466677777666653333222 25677777
Q ss_pred EEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCC
Q 000945 733 LEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDE 812 (1212)
Q Consensus 733 L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 812 (1212)
|++++|. +.........+ ..+++|++|++++|.+..+.+. ...+++|++|++++|.
T Consensus 352 L~l~~n~-l~~~~~~~~~~--------------------~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 352 LDLSRNG-LSFKGCCSQSD--------------------FGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EECCSSC-CBEEEEEEHHH--------------------HTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSE
T ss_pred EeCcCCc-cCccccccccc--------------------cccCccCEEECCCCcccccccc---ccccCCCCEEEccCCc
Confidence 7777763 33221000001 1156778888877777766532 4567778888888766
Q ss_pred ccccch-HHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccc-hhhhccCCCCccccCcccEEEEe
Q 000945 813 SENFRI-GFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDL-MYIWKQDSKLDSITENLESLEVW 890 (1212)
Q Consensus 813 ~~~~p~-~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~~~l~~L~~L~l~ 890 (1212)
+...++ ..+..+++|+.|+++.+.+...++ ..+..+++|+.|++++|.-. ..+ |..+..+++|++|+++
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~----p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFL----PDIFTELRNLTFLDLS 478 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCT-----TTTTTCTTCCEEECTTCEEGGGEE----CSCCTTCTTCCEEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccch-----hhhhcCCcCcEEECcCCcCccccc----hhhhhcccCCCEEECC
Confidence 665543 446778888888888555655443 22344778888888877522 123 5667778888888888
Q ss_pred cCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 891 WCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 891 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
+|...+..|..+..+++|+.|++++| .++.+++ ..+..+++|+.|++++|+
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCccccCChhhhhcccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEecCCc
Confidence 87655555666777888888888886 5666653 345677888888888776
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=7.4e-27 Score=286.88 Aligned_cols=459 Identities=15% Similarity=0.138 Sum_probs=255.6
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcC
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 347 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l 347 (1212)
+..+.++.++..+|..+. .++++|++++| .+..++...+.++.+|++|++++|.+. ......+..+
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~i~~~~~~~l 75 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ-----------TIEDGAYQSL 75 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCC-----------EECTTTTTTC
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCC-----------ccCcccccCc
Confidence 455667778888887664 57999999999 798888777999999999999999875 2234567788
Q ss_pred CCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCccc
Q 000945 348 SHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKN 427 (1212)
Q Consensus 348 ~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~~~ 427 (1212)
.+|++|+++.|.+..++.+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~------------------------------------------------------------ 95 (570)
T 2z63_A 76 SHLSTLILTGNPIQSLALGA------------------------------------------------------------ 95 (570)
T ss_dssp TTCCEEECTTCCCCEECTTT------------------------------------------------------------
T ss_pred hhCCEEeCcCCcCCccCHhh------------------------------------------------------------
Confidence 89999988877655433211
Q ss_pred ccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCC
Q 000945 428 VLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKL 507 (1212)
Q Consensus 428 ~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l 507 (1212)
+ ..+++|++|++.+|. +..++.. ....+++|++|+++++. +..+ ..|..++.+++|++|+++++ .+
T Consensus 96 ----~--~~l~~L~~L~L~~n~-l~~l~~~----~~~~l~~L~~L~L~~n~-l~~~-~lp~~~~~l~~L~~L~l~~n-~l 161 (570)
T 2z63_A 96 ----F--SGLSSLQKLVAVETN-LASLENF----PIGHLKTLKELNVAHNL-IQSF-KLPEYFSNLTNLEHLDLSSN-KI 161 (570)
T ss_dssp ----T--TTCTTCCEEECTTSC-CCCSTTC----SCTTCTTCCEEECCSSC-CCCC-CCCGGGGGCTTCCEEECTTS-CC
T ss_pred ----h--cCccccccccccccc-cccCCCc----cccccccccEEecCCCc-ccee-cChhhhcccCCCCEEeCcCC-cc
Confidence 1 157788888888773 3333221 13467788888888763 2211 12556777888888888874 56
Q ss_pred CccCchhhhccCCCc----cEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhH
Q 000945 508 KNIFSFSFVRGLPQL----QTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQ 583 (1212)
Q Consensus 508 ~~l~~~~~~~~L~~L----~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 583 (1212)
..+++ ..++.+.+| ++|+++++. +..++. ......+|+.|++.+...-.... .
T Consensus 162 ~~~~~-~~~~~l~~L~~~~~~L~l~~n~-l~~~~~------------~~~~~~~L~~L~l~~n~~~~~~~---------~ 218 (570)
T 2z63_A 162 QSIYC-TDLRVLHQMPLLNLSLDLSLNP-MNFIQP------------GAFKEIRLHKLTLRNNFDSLNVM---------K 218 (570)
T ss_dssp CEECG-GGGHHHHTCTTCCCEEECTTCC-CCEECT------------TTTTTCEEEEEEEESCCSCTTHH---------H
T ss_pred ceecH-HHccchhccchhhhhcccCCCC-ceecCH------------HHhccCcceeEecccccccccch---------h
Confidence 66543 345666666 778888765 444443 11222367777776532110000 0
Q ss_pred hhhcccccccCCcceecccccccccccccccccccccceeecccc------ccceecccCcccccCcCccEEEEecCCCc
Q 000945 584 TRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAI------STEKIWCNQLAAVYSQNLTRLIVHGCEKL 657 (1212)
Q Consensus 584 ~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~------~l~~~~~~~~~~~~l~~L~~L~L~~c~~l 657 (1212)
..+ ..+++++.+.+... .+..+....+....--.++.+++.++..+
T Consensus 219 ~~~----------------------------~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 219 TCI----------------------------QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp HHH----------------------------HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred hhh----------------------------cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 000 01122222111110 01111111111000112455666655344
Q ss_pred cccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEec
Q 000945 658 KYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYG 737 (1212)
Q Consensus 658 ~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~ 737 (1212)
....+. .++.+++|++|++++|. +..++. ....+ + |+.|++.+
T Consensus 271 ~~~~~~-~~~~l~~L~~L~l~~~~-l~~l~~--------~~~~~-~--------------------------L~~L~l~~ 313 (570)
T 2z63_A 271 LDDIID-LFNCLTNVSSFSLVSVT-IERVKD--------FSYNF-G--------------------------WQHLELVN 313 (570)
T ss_dssp ESCSTT-TTGGGTTCSEEEEESCE-ECSCCB--------CCSCC-C--------------------------CSEEEEES
T ss_pred hhhchh-hhcCcCcccEEEecCcc-chhhhh--------hhccC-C--------------------------ccEEeecc
Confidence 333332 24667777777777665 333321 11112 4 44445544
Q ss_pred CCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccc
Q 000945 738 CDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFR 817 (1212)
Q Consensus 738 C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p 817 (1212)
|. +..+|. ..+++|+.|++++|.+....+ ...+++|++|++++|.+...+
T Consensus 314 n~-~~~l~~-------------------------~~l~~L~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 314 CK-FGQFPT-------------------------LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CB-CSSCCB-------------------------CBCSSCCEEEEESCBSCCBCC----CCBCTTCCEEECCSSCCBEEE
T ss_pred Cc-ccccCc-------------------------ccccccCEEeCcCCccccccc----cccCCCCCEEeCcCCccCccc
Confidence 42 222210 013455555555544433321 134556666666665555442
Q ss_pred --hHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCc
Q 000945 818 --IGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENL 895 (1212)
Q Consensus 818 --~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l 895 (1212)
+..+..+++|+.|+++.|.+..+++. +..+++|+.|++++|.- ..+. ....+..+++|++|++++|...
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l-~~~~--~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNL-KQMS--EFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEE-ESCT--TSCTTTTCTTCCEEECTTSCCE
T ss_pred cccccccccCccCEEECCCCcccccccc------ccccCCCCEEEccCCcc-cccc--chhhhhcCCCCCEEeCcCCccc
Confidence 23366677777777775556554431 33467777777777542 2211 0134566777777777777665
Q ss_pred ccccCCccccCCccEEeeccccCc-ccccchhhhcccccccEEEecCcc
Q 000945 896 INLVPSSASFKNLTTLELWYCQRL-MNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 896 ~~lp~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
...|..+..+++|+.|++++|.-. ..+| ..+..+++|+.|++++|.
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc
Confidence 556666677777777777776422 1343 445667777777777775
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.5e-27 Score=289.27 Aligned_cols=495 Identities=16% Similarity=0.173 Sum_probs=281.5
Q ss_pred eeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcCC
Q 000945 269 ILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLS 348 (1212)
Q Consensus 269 ~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l~ 348 (1212)
+.+.+++.++.+|..+. .+|++|++++| .+..+++..+.++.+|++|++++|.+. ...+..+..+.
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----------~~~~~~~~~l~ 74 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRIN-----------TIEGDAFYSLG 74 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCC-----------EECTTTTTTCT
T ss_pred eEECCCCccccccccCC--CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcC-----------ccChhhccccc
Confidence 35677778888887664 67888888888 687776555888888888888888775 22335566777
Q ss_pred CCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCcccc
Q 000945 349 HLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGIKNV 428 (1212)
Q Consensus 349 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~~~~ 428 (1212)
+|++|+++.|.+..++...
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~------------------------------------------------------------- 93 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSW------------------------------------------------------------- 93 (549)
T ss_dssp TCCEEECTTSCCCSCCHHH-------------------------------------------------------------
T ss_pred cCCEEECCCCccCccCHHH-------------------------------------------------------------
Confidence 7777777766554333210
Q ss_pred cccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCCC
Q 000945 429 LYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLK 508 (1212)
Q Consensus 429 ~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~ 508 (1212)
+ ..+++|++|++++|.. ..+ ..+..++.+++|++|++++|..+.
T Consensus 94 ---~--~~l~~L~~L~Ls~n~l-~~~------------------------------~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 94 ---F--GPLSSLKYLNLMGNPY-QTL------------------------------GVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp ---H--TTCTTCCEEECTTCCC-SSS------------------------------CSSCSCTTCTTCCEEEEEESSSCC
T ss_pred ---h--ccCCCCcEEECCCCcc-ccc------------------------------chhhhhhccCCccEEECCCCcccc
Confidence 0 1455666666665521 100 012234566777777777765556
Q ss_pred ccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhhhcc
Q 000945 509 NIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKE 588 (1212)
Q Consensus 509 ~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~ 588 (1212)
.+++ ..+.++++|++|++++|..-...|. .+..+++|++|++.+... ..++..
T Consensus 138 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~~L~~L~l~~n~~-~~~~~~------------- 190 (549)
T 2z81_A 138 EIRR-IDFAGLTSLNELEIKALSLRNYQSQ------------SLKSIRDIHHLTLHLSES-AFLLEI------------- 190 (549)
T ss_dssp EECT-TTTTTCCEEEEEEEEETTCCEECTT------------TTTTCSEEEEEEEECSBS-TTHHHH-------------
T ss_pred ccCH-hhhhcccccCeeeccCCcccccChh------------hhhccccCceEecccCcc-cccchh-------------
Confidence 6543 3456677777777777653222332 445566666666654321 110000
Q ss_pred cccccCCcceecccccccccccccccccccccceeeccccccceecccCcc-cccCcCccEEEEecCCCccccCch---h
Q 000945 589 LSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLA-AVYSQNLTRLIVHGCEKLKYLFPS---S 664 (1212)
Q Consensus 589 L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l~~~---~ 664 (1212)
....+++|+.|++++|.+........+ ...+++|+.|+++++. +....+. .
T Consensus 191 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~ 245 (549)
T 2z81_A 191 ------------------------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLK 245 (549)
T ss_dssp ------------------------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHG
T ss_pred ------------------------hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHHH
Confidence 001246677777777754432110000 0135666777766652 2211111 0
Q ss_pred hhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccc
Q 000945 665 MIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIF 744 (1212)
Q Consensus 665 ~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 744 (1212)
.+..+++|+.|++++|. +..+.. ++ .+. ......+++|+.|.+.++. +...
T Consensus 246 ~~~~~~~L~~l~l~~~~-~~~~~~------------~~---~~~------------~~~~~~l~~L~~L~l~~~~-i~~~ 296 (549)
T 2z81_A 246 LLRYILELSEVEFDDCT-LNGLGD------------FN---PSE------------SDVVSELGKVETVTIRRLH-IPQF 296 (549)
T ss_dssp GGGGCTTCCEEEEESCE-EECCSC------------CC---CCT------------TTCCCCCTTCCEEEEESCB-CSCG
T ss_pred Hhhhhcccccccccccc-cccccc------------cc---ccc------------hhhhhhhcccccccccccc-cchh
Confidence 12445566666666664 111100 00 000 0001134455555555542 1110
Q ss_pred cccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhc
Q 000945 745 TSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERF 824 (1212)
Q Consensus 745 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l 824 (1212)
. . . .++..+ ...+.+|+.|++++|.+..+|.+++..+
T Consensus 297 ~-------~--------------------~----------~~l~~~------~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 297 Y-------L--------------------F----------YDLSTV------YSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp G-------G--------------------S----------CCCCHH------HHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred h-------h--------------------c----------ccchhh------hhhcccceEEEeccCccccCCHHHHhcC
Confidence 0 0 0 000000 1123567777777777777777766777
Q ss_pred CccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccc
Q 000945 825 HNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSAS 904 (1212)
Q Consensus 825 ~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 904 (1212)
++|+.|+++.|.+.+..+.. ...++.+++|+.|++++|. +..++.. ...+..+++|++|++++| .++.+|..+..
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 408 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNH-LRSMQKT-GEILLTLKNLTSLDISRN-TFHPMPDSCQW 408 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSC-CCCHHHH-HHHGGGCTTCCEEECTTC-CCCCCCSCCCC
T ss_pred ccccEEEccCCccccccccc--hhhhhccccCcEEEccCCc-ccccccc-hhhhhcCCCCCEEECCCC-CCccCChhhcc
Confidence 88888888855555432110 0123346778888887764 4333210 022566788888888876 55577777777
Q ss_pred cCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCc
Q 000945 905 FKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNY 984 (1212)
Q Consensus 905 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 984 (1212)
+++|++|++++| .++.++.. . .++|+.|++++|. +..++ ..+++|+.|+++++ .++.+|...
T Consensus 409 ~~~L~~L~Ls~N-~l~~l~~~-~---~~~L~~L~Ls~N~-l~~~~----------~~l~~L~~L~Ls~N-~l~~ip~~~- 470 (549)
T 2z81_A 409 PEKMRFLNLSST-GIRVVKTC-I---PQTLEVLDVSNNN-LDSFS----------LFLPRLQELYISRN-KLKTLPDAS- 470 (549)
T ss_dssp CTTCCEEECTTS-CCSCCCTT-S---CTTCSEEECCSSC-CSCCC----------CCCTTCCEEECCSS-CCSSCCCGG-
T ss_pred cccccEEECCCC-Ccccccch-h---cCCceEEECCCCC-hhhhc----------ccCChhcEEECCCC-ccCcCCCcc-
Confidence 788888888886 46666421 1 2568888888875 44333 23678888888887 567777632
Q ss_pred eeecCCccEEEeccCCCccccC-cCCcCCCccceEEeccCc
Q 000945 985 TLKFPSLEDLFVIECPKMKIFS-HRVLSTPRLREVRQNWGL 1024 (1212)
Q Consensus 985 ~~~~~sL~~L~i~~C~~l~~lp-~~~~~~~~L~~l~~~~~~ 1024 (1212)
.+++|++|++++|. +..+| ..+..+++|+.+++++|.
T Consensus 471 --~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 --LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --GCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --cCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence 35889999998875 44554 446778889999988776
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.2e-27 Score=285.27 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=128.9
Q ss_pred cceeeeccCCccccc-cHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.+++|++++|.+..+ |..++.+.+|++|++++| .+..++++.+.++.+|++|++++|.+. ...+..+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~ 94 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS-----------SLSSSWF 94 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC-----------SCCHHHH
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccC-----------ccCHHHh
Confidence 799999999999988 678999999999999999 898888777999999999999999885 3344558
Q ss_pred hcCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCC
Q 000945 345 KLLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPG 424 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~ 424 (1212)
..+.+|++|+++.|.+..++..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------------- 116 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVT---------------------------------------------------------- 116 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSS----------------------------------------------------------
T ss_pred ccCCCCcEEECCCCcccccchh----------------------------------------------------------
Confidence 8999999999998876532210
Q ss_pred cccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecC
Q 000945 425 IKNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNC 504 (1212)
Q Consensus 425 ~~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c 504 (1212)
..+ ..+++|++|++.+|..+..++.. ....+++|+.|+++++. +.. ..|..++.+++|++|+++++
T Consensus 117 -----~~~--~~l~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 117 -----SLF--PNLTNLQTLRIGNVETFSEIRRI----DFAGLTSLNELEIKALS-LRN--YQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp -----CSC--TTCTTCCEEEEEESSSCCEECTT----TTTTCCEEEEEEEEETT-CCE--ECTTTTTTCSEEEEEEEECS
T ss_pred -----hhh--hccCCccEEECCCCccccccCHh----hhhcccccCeeeccCCc-ccc--cChhhhhccccCceEecccC
Confidence 001 14667778888777544444321 13456677777777663 221 23555677778888888774
Q ss_pred CCCCccCchhhhccCCCccEEEEccCc
Q 000945 505 DKLKNIFSFSFVRGLPQLQTLNVINCK 531 (1212)
Q Consensus 505 ~~l~~l~~~~~~~~L~~L~~L~l~~c~ 531 (1212)
.+..++. ..+..+++|++|+++++.
T Consensus 183 -~~~~~~~-~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 183 -ESAFLLE-IFADILSSVRYLELRDTN 207 (549)
T ss_dssp -BSTTHHH-HHHHSTTTBSEEEEESCB
T ss_pred -cccccch-hhHhhcccccEEEccCCc
Confidence 3444432 234567888888888765
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.1e-26 Score=286.02 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=102.0
Q ss_pred ccCCcc--ccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcc--hhhcccccCCccCCccCceec------
Q 000945 486 GQLRAE--SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMK--EIFTVGRENDVDCHEVDKIEF------ 555 (1212)
Q Consensus 486 ~~~~~~--~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~--~l~~~~~~~~~~~~~~~l~~l------ 555 (1212)
.|..++ .+++|++|+|++|.....+| ..+.++++|++|++++|..+. .+|. .+..+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~------------~~~~L~~~~~l 304 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKD------------DWQALADAPVG 304 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHH------------HHHHHHHSGGG
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCccccchH------------HHHhhhccccC
Confidence 466777 89999999999986666676 567889999999999987444 4665 44444
Q ss_pred ccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccc-eec
Q 000945 556 SQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTE-KIW 634 (1212)
Q Consensus 556 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~-~~~ 634 (1212)
++|+.|+++++.- ..++. ...+..+++|+.|++++|.+. .+.
T Consensus 305 ~~L~~L~L~~n~l-~~ip~------------------------------------~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 305 EKIQIIYIGYNNL-KTFPV------------------------------------ETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp GTCCEEECCSSCC-SSCCC------------------------------------HHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCCEEECCCCcC-CccCc------------------------------------hhhhccCCCCCEEeCcCCcCccchh
Confidence 7777877776532 12211 002234577777777777665 333
Q ss_pred ccCcccccCcCccEEEEecCCCccccCchhhhhccCC-CcEEEeccccccceeecccccccccccccCCccceeecccCC
Q 000945 635 CNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQ-LEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS 713 (1212)
Q Consensus 635 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~ 713 (1212)
.+ ..+++|+.|++++| .+..+|.. ++.+++ |++|++++|. +..++.. + ....+++|+.|+++++.
T Consensus 348 --~~--~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~~L~~L~Ls~N~-l~~lp~~-~-----~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 348 --AF--GSEIKLASLNLAYN-QITEIPAN--FCGFTEQVENLSFAHNK-LKYIPNI-F-----DAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp --CC--EEEEEESEEECCSS-EEEECCTT--SEEECTTCCEEECCSSC-CSSCCSC-C-----CTTCSSCEEEEECCSSC
T ss_pred --hh--CCCCCCCEEECCCC-ccccccHh--hhhhcccCcEEEccCCc-Ccccchh-h-----hhcccCccCEEECcCCc
Confidence 22 24677777777775 45555543 567777 7777777776 4444321 0 11123456666666553
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=278.58 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=112.5
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccch--HHHhhcCccceeEEEccceeE-eccccchhhcc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRI--GFLERFHNLEKLELRWSSYKE-IFSNEEIVEHA 850 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~l~~l~~L~~L~l~c~~l~~-~~~~~~~~~~~ 850 (1212)
+++|++|++++|.+.+..+ .....+++|++|++++|.+..++. ..+..+++|+.|+++.|.+.. ++.. .+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----~~ 395 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVF--ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----DC 395 (520)
T ss_dssp CCCCCEEECCSSCCCTTTT--TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----SC
T ss_pred CCcccEEEeECCccChhhh--hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----hh
Confidence 5677777777777776443 234567888888888887776543 347888899999998777766 4321 23
Q ss_pred ccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcc
Q 000945 851 EMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKS 930 (1212)
Q Consensus 851 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 930 (1212)
..+++|+.|++++|.--..+ +..+. ++|+.|++++| .++.+|..+..+++|+.|++++| .++.+|.. .+..
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~----~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~ 466 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTI----FRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDG-IFDR 466 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGG----GGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTT
T ss_pred ccCccCCEEECcCCCCCcch----hhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHH-Hhcc
Confidence 34788999999887633333 22221 78999999987 45688888889999999999996 78888743 4678
Q ss_pred cccccEEEecCcc
Q 000945 931 LVCLTKLRIDGCR 943 (1212)
Q Consensus 931 l~~L~~L~i~~c~ 943 (1212)
+++|+.|++++|+
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 8999999999887
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.2e-25 Score=279.92 Aligned_cols=361 Identities=13% Similarity=0.075 Sum_probs=231.3
Q ss_pred CCccCchhhhccCCCccEEEEccCcCcch------------------hhcccccCCccCCccCce--ecccccEEecccC
Q 000945 507 LKNIFSFSFVRGLPQLQTLNVINCKNMKE------------------IFTVGRENDVDCHEVDKI--EFSQLHSLTLKFL 566 (1212)
Q Consensus 507 l~~l~~~~~~~~L~~L~~L~l~~c~~l~~------------------l~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~ 566 (1212)
++.+| ..++++++|++|+++++. +.. +|. .+. .+++|+.|+|+++
T Consensus 437 L~~IP--~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~------------~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 437 ITFIS--KAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE------------ELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp EEEEC--GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS------------CCCGGGCTTCCEEEEESC
T ss_pred ccchh--HHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh------------hhhhccCCCCCEEECcCC
Confidence 33455 346777888888888766 444 554 444 7777888887776
Q ss_pred CcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccc-cce--ecccC--c--c
Q 000945 567 PQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAIS-TEK--IWCNQ--L--A 639 (1212)
Q Consensus 567 ~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~-l~~--~~~~~--~--~ 639 (1212)
.....++ ..+..+++|+.|+|++|. +.. ++... + .
T Consensus 502 ~l~~~iP--------------------------------------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~ 543 (876)
T 4ecn_A 502 PNMTQLP--------------------------------------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543 (876)
T ss_dssp TTCCSCC--------------------------------------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC
T ss_pred CCCccCh--------------------------------------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhc
Confidence 5333322 223456778888888875 543 21100 0 0
Q ss_pred cccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceec
Q 000945 640 AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFY 719 (1212)
Q Consensus 640 ~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~ 719 (1212)
...+++|+.|+|++| .+..+|....++++++|++|++++|. +..++ ....+++|+.|+++++. +..++
T Consensus 544 ~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp---------~~~~L~~L~~L~Ls~N~-l~~lp 611 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE---------AFGTNVKLTDLKLDYNQ-IEEIP 611 (876)
T ss_dssp TTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC---------CCCTTSEESEEECCSSC-CSCCC
T ss_pred ccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCC-cccch---------hhcCCCcceEEECcCCc-cccch
Confidence 024568888888886 45566652236788888888888886 44553 23347888888888775 33444
Q ss_pred cCCCcCCCCC-ccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccC---
Q 000945 720 PGTHTSKWPM-LKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQF--- 795 (1212)
Q Consensus 720 ~~~~~~~~~~-L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~--- 795 (1212)
.. ...+++ |+.|++++|. +..+|.... . ...++|+.|++++|.+.+..+...
T Consensus 612 ~~--l~~l~~~L~~L~Ls~N~-L~~lp~~~~---~------------------~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 612 ED--FCAFTDQVEGLGFSHNK-LKYIPNIFN---A------------------KSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TT--SCEECTTCCEEECCSSC-CCSCCSCCC---T------------------TCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred HH--HhhccccCCEEECcCCC-CCcCchhhh---c------------------cccCCCCEEECcCCcCCCccccchhhh
Confidence 33 235677 8999998874 555542110 0 013459999999988876543211
Q ss_pred cccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccch--hhccccccccceEeeCCCccchhhhcc
Q 000945 796 PKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEI--VEHAEMLTQVKSLKLWELSDLMYIWKQ 873 (1212)
Q Consensus 796 ~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~l~~~ 873 (1212)
....+++|+.|++++|.+..+|...+..+++|+.|+|+.|.++.++..... .....++++|+.|+|++|. +..+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l--- 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL--- 743 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC---
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-Cccc---
Confidence 111345899999999999999998888899999999997788766542210 0001223488888888873 4444
Q ss_pred CCCCcc--ccCcccEEEEecCCCcccccCCccccCCccEEeeccc------cCcccccchhhhcccccccEEEecCcchh
Q 000945 874 DSKLDS--ITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC------QRLMNLVTSSTAKSLVCLTKLRIDGCRML 945 (1212)
Q Consensus 874 ~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c------~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 945 (1212)
|..+. .+++|+.|++++|.. +.+|..+..+++|+.|++++| .-...+| ..+..+++|+.|++++|. +
T Consensus 744 -p~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~L~Ls~N~-L 818 (876)
T 4ecn_A 744 -SDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQLQIGSND-I 818 (876)
T ss_dssp -CGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSSC-C
T ss_pred -hHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCEEECCCCC-C
Confidence 45554 788888888888644 447877888888888888763 2233443 445677888888888877 3
Q ss_pred hHhhccCccccccceeccchhhhhhccCC
Q 000945 946 TEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 946 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
..+|.. ..++|+.|++++|+
T Consensus 819 ~~Ip~~---------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 819 RKVDEK---------LTPQLYILDIADNP 838 (876)
T ss_dssp CBCCSC---------CCSSSCEEECCSCT
T ss_pred CccCHh---------hcCCCCEEECCCCC
Confidence 666521 23677777777775
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.3e-25 Score=274.20 Aligned_cols=210 Identities=13% Similarity=0.081 Sum_probs=124.1
Q ss_pred ccceeeeeccccccccccccCc-----ccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccch--h
Q 000945 775 SKLEELKLSGKDIAMICQSQFP-----KHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEI--V 847 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~-----~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~--~ 847 (1212)
++|+.|++++|.+.+..+..+. ...+++|++|++++|.+..+|...+..+++|+.|+++.|.++.++..... .
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 4677777777777665432221 01455778888888777788877777778888888886667655432110 0
Q ss_pred hccccccccceEeeCCCccchhhhccCCCCcc--ccCcccEEEEecCCCcccccCCccccCCccEEeecc------ccCc
Q 000945 848 EHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS--ITENLESLEVWWCENLINLVPSSASFKNLTTLELWY------CQRL 919 (1212)
Q Consensus 848 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~------c~~l 919 (1212)
..+..+++|+.|++++|. +..+ |..+. .+++|+.|++++|... .+|..+..+++|+.|++++ |.-.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~-l~~l----p~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNK-LTKL----SDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EECTTGGGCCEEECCSSC-CCBC----CGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccCCccEEECcCCc-CCcc----ChhhhhccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCccc
Confidence 001122377888887764 3444 44454 7777888888876544 3777777778888888754 3223
Q ss_pred ccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCc-e------eecCCcc
Q 000945 920 MNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNY-T------LKFPSLE 992 (1212)
Q Consensus 920 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~-~------~~~~sL~ 992 (1212)
..+| ..+..+++|+.|++++|. +..+|.. ..++|+.|++++++ +.+++.... + ..+...+
T Consensus 556 ~~~p--~~l~~l~~L~~L~Ls~N~-l~~ip~~---------~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~ 622 (636)
T 4eco_A 556 REWP--EGITLCPSLTQLQIGSND-IRKVNEK---------ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDK 622 (636)
T ss_dssp CCCC--TTGGGCSSCCEEECCSSC-CCBCCSC---------CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCT
T ss_pred ccCh--HHHhcCCCCCEEECCCCc-CCccCHh---------HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCC
Confidence 3444 445667777777777776 3555521 23677777777774 333332111 0 0112334
Q ss_pred EEEeccCCCcc
Q 000945 993 DLFVIECPKMK 1003 (1212)
Q Consensus 993 ~L~i~~C~~l~ 1003 (1212)
..+|++|+.++
T Consensus 623 ~~~i~~C~~L~ 633 (636)
T 4eco_A 623 TQDIRGCDALD 633 (636)
T ss_dssp TSEEESCGGGC
T ss_pred ccccCCCcccc
Confidence 45677777654
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.6e-25 Score=272.32 Aligned_cols=359 Identities=14% Similarity=0.089 Sum_probs=253.3
Q ss_pred ccCCccccCCccEEEEecCCCCCc------------------cCchhhhc--cCCCccEEEEccCcCcchhhcccccCCc
Q 000945 486 GQLRAESFYKLKIIKVRNCDKLKN------------------IFSFSFVR--GLPQLQTLNVINCKNMKEIFTVGRENDV 545 (1212)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~c~~l~~------------------l~~~~~~~--~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 545 (1212)
.|..++.+++|++|+|+++ .+.. +|. .++ ++++|++|++++|.....+|.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP~------- 509 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLPD------- 509 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCCG-------
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccChH-------
Confidence 4778899999999999995 5777 763 345 999999999999987778876
Q ss_pred cCCccCceecccccEEecccCCcccc--cccccccchhhHhhhcccccccCCcceeccccccccccccccccccccccee
Q 000945 546 DCHEVDKIEFSQLHSLTLKFLPQLTS--FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETL 623 (1212)
Q Consensus 546 ~~~~~~l~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L 623 (1212)
.+..+++|+.|+++++..+.. ++... ..+. ..+..+++|+.|
T Consensus 510 -----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-------~~L~------------------------~~~~~l~~L~~L 553 (876)
T 4ecn_A 510 -----FLYDLPELQSLNIACNRGISAAQLKADW-------TRLA------------------------DDEDTGPKIQIF 553 (876)
T ss_dssp -----GGGGCSSCCEEECTTCTTSCHHHHHHHH-------HHHH------------------------HCTTTTTTCCEE
T ss_pred -----HHhCCCCCCEEECcCCCCcccccchHHH-------Hhhh------------------------hcccccCCccEE
Confidence 788999999999999874543 33211 0000 012345789999
Q ss_pred eccccccceecc-cCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCC
Q 000945 624 ELCAISTEKIWC-NQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFP 702 (1212)
Q Consensus 624 ~l~~~~l~~~~~-~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~ 702 (1212)
++++|.+..++. ..+ ..+++|+.|+|++| .+..+|. ++.+++|+.|++++|. +..++. ....++
T Consensus 554 ~Ls~N~L~~ip~~~~l--~~L~~L~~L~Ls~N-~l~~lp~---~~~L~~L~~L~Ls~N~-l~~lp~--------~l~~l~ 618 (876)
T 4ecn_A 554 YMGYNNLEEFPASASL--QKMVKLGLLDCVHN-KVRHLEA---FGTNVKLTDLKLDYNQ-IEEIPE--------DFCAFT 618 (876)
T ss_dssp ECCSSCCCBCCCHHHH--TTCTTCCEEECTTS-CCCBCCC---CCTTSEESEEECCSSC-CSCCCT--------TSCEEC
T ss_pred EeeCCcCCccCChhhh--hcCCCCCEEECCCC-Ccccchh---hcCCCcceEEECcCCc-cccchH--------HHhhcc
Confidence 999997765543 112 25888999999886 4556662 6888999999998887 555532 244577
Q ss_pred c-cceeecccCCccceeccCCCcCCCCCccEEEEecCCCccccccccc-chhhccCCCCCCccccceeeeeeecccceee
Q 000945 703 K-VTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFL-RFQEINEGQFDIPTQQALFLVEKVTSKLEEL 780 (1212)
Q Consensus 703 ~-L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L 780 (1212)
+ |+.|+++++. +..++........++|+.|++++|.--..+| ..+ .+.. ..+++|+.|
T Consensus 619 ~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~------------------~~~~~L~~L 678 (876)
T 4ecn_A 619 DQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDD------------------YKGINASTV 678 (876)
T ss_dssp TTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTT------------------CCCCCEEEE
T ss_pred ccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccc-cchhhhcc------------------ccCCCcCEE
Confidence 7 9999998875 4455533222233458999999874322221 111 0000 014689999
Q ss_pred eeccccccccccccCcccccccceEeEeecCCccccchHHHhh-------cCccceeEEEccceeEeccccchhhccc--
Q 000945 781 KLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLER-------FHNLEKLELRWSSYKEIFSNEEIVEHAE-- 851 (1212)
Q Consensus 781 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~-------l~~L~~L~l~c~~l~~~~~~~~~~~~~~-- 851 (1212)
++++|.+..++.. ....+++|+.|++++|.+..+|.+.+.. +++|+.|+|+.|.++.++. .+.
T Consensus 679 ~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~------~l~~~ 750 (876)
T 4ecn_A 679 TLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD------DFRAT 750 (876)
T ss_dssp ECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG------GGSTT
T ss_pred EccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH------Hhhhc
Confidence 9999988866431 1235788999999998888888876543 3489999999777876553 222
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEec------CCCcccccCCccccCCccEEeeccccCcccccch
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWW------CENLINLVPSSASFKNLTTLELWYCQRLMNLVTS 925 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~ 925 (1212)
.+++|+.|+|++|. +..+ |..+..+++|+.|++++ |...+.+|..+..+++|+.|++++| .+..+|..
T Consensus 751 ~l~~L~~L~Ls~N~-L~~l----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~ 824 (876)
T 4ecn_A 751 TLPYLSNMDVSYNC-FSSF----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK 824 (876)
T ss_dssp TCTTCCEEECCSSC-CSSC----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred cCCCcCEEEeCCCC-CCcc----chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh
Confidence 47899999998864 4444 66778899999999976 5556778888888999999999997 56888743
Q ss_pred hhhcccccccEEEecCcc
Q 000945 926 STAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 926 ~~~~~l~~L~~L~i~~c~ 943 (1212)
+ .++|+.|++++|+
T Consensus 825 -l---~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 825 -L---TPQLYILDIADNP 838 (876)
T ss_dssp -C---CSSSCEEECCSCT
T ss_pred -h---cCCCCEEECCCCC
Confidence 2 2589999999997
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=9.9e-25 Score=264.07 Aligned_cols=439 Identities=14% Similarity=0.113 Sum_probs=279.1
Q ss_pred cccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCcc
Q 000945 467 LLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVD 546 (1212)
Q Consensus 467 ~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 546 (1212)
++|++|+++++. +..+ .+..+..+++|++|++++| .++.+++ ..+.++++|++|+++++. ++.+|.
T Consensus 21 ~~L~~L~Ls~n~-i~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~lp~-------- 86 (520)
T 2z7x_B 21 QKTTILNISQNY-ISEL--WTSDILSLSKLRILIISHN-RIQYLDI-SVFKFNQELEYLDLSHNK-LVKISC-------- 86 (520)
T ss_dssp TTCSEEECCSSC-CCCC--CHHHHTTCTTCCEEECCSS-CCCEEEG-GGGTTCTTCCEEECCSSC-CCEEEC--------
T ss_pred ccccEEECCCCc-cccc--ChhhccccccccEEecCCC-ccCCcCh-HHhhcccCCCEEecCCCc-eeecCc--------
Confidence 566666666652 2211 1234566777777777774 5666533 346777777777777764 566665
Q ss_pred CCccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeecc
Q 000945 547 CHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELC 626 (1212)
Q Consensus 547 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~ 626 (1212)
. .+++|++|+++++.- ..+ .+...+..+++|++|+++
T Consensus 87 ----~--~l~~L~~L~L~~N~l-~~~------------------------------------~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 87 ----H--PTVNLKHLDLSFNAF-DAL------------------------------------PICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp ----C--CCCCCSEEECCSSCC-SSC------------------------------------CCCGGGGGCTTCCEEEEE
T ss_pred ----c--ccCCccEEeccCCcc-ccc------------------------------------cchhhhccCCcceEEEec
Confidence 2 567777777766532 110 011223445777777777
Q ss_pred ccccceecccCcccccCcCc--cEEEEecCCC--ccccCchhhhhccC-CCcEEEeccccccceeecccccccccccccC
Q 000945 627 AISTEKIWCNQLAAVYSQNL--TRLIVHGCEK--LKYLFPSSMIRNFV-QLEHLEICYCSSLESIVGKESGEEATTTFVF 701 (1212)
Q Consensus 627 ~~~l~~~~~~~~~~~~l~~L--~~L~L~~c~~--l~~l~~~~~l~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 701 (1212)
+|.+..... ..+++| +.|++++|.. ... .|.. ++.+. ....++++++.....+.. .....+
T Consensus 124 ~n~l~~~~~-----~~l~~L~L~~L~l~~n~l~~~~~-~~~~-l~~l~~~~l~l~l~~n~~~~~~~~-------~~~~~l 189 (520)
T 2z7x_B 124 TTHLEKSSV-----LPIAHLNISKVLLVLGETYGEKE-DPEG-LQDFNTESLHIVFPTNKEFHFILD-------VSVKTV 189 (520)
T ss_dssp ESSCCGGGG-----GGGTTSCEEEEEEEECTTTTSSC-CTTT-TTTCCEEEEEEECCSSSCCCCCCC-------CCCTTC
T ss_pred Ccccchhhc-----cccccceeeEEEeeccccccccc-cccc-ccccccceEEEEeccCcchhhhhh-------hhhhcc
Confidence 775544222 135666 7888877643 222 2211 23222 122344555543333221 123346
Q ss_pred CccceeecccCCc------cceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecc
Q 000945 702 PKVTFLKLWNLSE------LKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTS 775 (1212)
Q Consensus 702 ~~L~~L~l~~~~~------L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 775 (1212)
++|+.|++.++.. +..... ....+++|+.|++.+|.--...+...+.. ...+
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~--------------------~~~~ 247 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQL--------------------VWHT 247 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHH--------------------HHTS
T ss_pred cceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHH--------------------hhhC
Confidence 7777777776531 111111 12257888888888763211110000000 0145
Q ss_pred cceeeeeccccccccccccC-c--ccccccceEeEeecCCccccchHHHhhc---CccceeEEEccceeEeccccchhhc
Q 000945 776 KLEELKLSGKDIAMICQSQF-P--KHIFRNLKNLEVVNDESENFRIGFLERF---HNLEKLELRWSSYKEIFSNEEIVEH 849 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~~~-~--~~~~~~L~~L~l~~~~~~~~p~~~l~~l---~~L~~L~l~c~~l~~~~~~~~~~~~ 849 (1212)
+|++|++++|.+.+..+... . ...+++|+.++++++.+ .+|...+..+ ++|+.|+++.+.+......
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------ 320 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP------ 320 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccch------
Confidence 89999999988874333211 1 15688999999999888 8885445555 6799999996666544311
Q ss_pred cccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcc--cccCCccccCCccEEeeccccCccc-ccchh
Q 000945 850 AEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLI--NLVPSSASFKNLTTLELWYCQRLMN-LVTSS 926 (1212)
Q Consensus 850 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~-l~~~~ 926 (1212)
..+++|++|++++|.--. ..|..+..+++|++|++++|.... .+|..+..+++|+.|++++| .++. +|. .
T Consensus 321 -~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~-~ 393 (520)
T 2z7x_B 321 -SKISPFLHLDFSNNLLTD----TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK-G 393 (520)
T ss_dssp -SSCCCCCEEECCSSCCCT----TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG-C
T ss_pred -hhCCcccEEEeECCccCh----hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCccccc-c
Confidence 237999999999975322 236778899999999999986554 56666788999999999996 5665 653 3
Q ss_pred hhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccC
Q 000945 927 TAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFS 1006 (1212)
Q Consensus 927 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp 1006 (1212)
.+..+++|+.|++++|.....++.. ..++|+.|++++| .++.+|.... .+++|++|++++| .++.+|
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCC
T ss_pred hhccCccCCEEECcCCCCCcchhhh---------hcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccC
Confidence 4577899999999999844555421 1279999999999 5789987665 5699999999998 577899
Q ss_pred cC-CcCCCccceEEeccCcc
Q 000945 1007 HR-VLSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 1007 ~~-~~~~~~L~~l~~~~~~~ 1025 (1212)
.. +..+++|+.+++++|..
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 87 77899999999998764
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.3e-23 Score=262.19 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=77.4
Q ss_pred cceeeeccCCcccccc-HHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQLP-EEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp-~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.+++|||++|.|+.+| .+|+++.+|++|+|++| .|..+|+++|.+|.+|++|++++|.+. ......|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~-----------~l~~~~f 120 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ-----------SLALGAF 120 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC-----------EECGGGG
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCC-----------CCCHHHh
Confidence 6899999999999996 57999999999999999 899999988999999999999999885 2233568
Q ss_pred hcCCCCCcceeeecccccCCCC
Q 000945 345 KLLSHLTTLEIQICDAMILPKG 366 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~~ 366 (1212)
.++.+|++|+++.|.+..+|..
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC
T ss_pred cCCCCCCEEECCCCcCCCCChh
Confidence 8899999999999988877654
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=6.4e-25 Score=257.66 Aligned_cols=340 Identities=17% Similarity=0.124 Sum_probs=165.8
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
+|++|++++|.+..+|.+|+++.+|++|++++|.....+|.. ++++.+|+.+++..|..
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~-------------------- 70 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLD-------------------- 70 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHH--------------------
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhc--------------------
Confidence 577788888888778888888888888888887322366766 67777665555444321
Q ss_pred cCCCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHHhccceEEEeccCCCc
Q 000945 346 LLSHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQLKGIEELYLDEVPGI 425 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~l~~l~~L~l~~~~~~ 425 (1212)
.++++|+++.+.+..+|..
T Consensus 71 --~~l~~L~l~~~~l~~lp~~----------------------------------------------------------- 89 (454)
T 1jl5_A 71 --RQAHELELNNLGLSSLPEL----------------------------------------------------------- 89 (454)
T ss_dssp --HTCSEEECTTSCCSCCCSC-----------------------------------------------------------
T ss_pred --cCCCEEEecCCccccCCCC-----------------------------------------------------------
Confidence 2344455555544433321
Q ss_pred ccccccCCccccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCC
Q 000945 426 KNVLYDLDIEGFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCD 505 (1212)
Q Consensus 426 ~~~~~~l~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~ 505 (1212)
.++|++|++++|. +..++. .+++|+.|+++++ .+..+ +. ..++|++|++++|
T Consensus 90 -----------~~~L~~L~l~~n~-l~~lp~--------~~~~L~~L~l~~n-~l~~l---~~---~~~~L~~L~L~~n- 141 (454)
T 1jl5_A 90 -----------PPHLESLVASCNS-LTELPE--------LPQSLKSLLVDNN-NLKAL---SD---LPPLLEYLGVSNN- 141 (454)
T ss_dssp -----------CTTCSEEECCSSC-CSSCCC--------CCTTCCEEECCSS-CCSCC---CS---CCTTCCEEECCSS-
T ss_pred -----------cCCCCEEEccCCc-CCcccc--------ccCCCcEEECCCC-ccCcc---cC---CCCCCCEEECcCC-
Confidence 1345555554442 111221 1245555555554 22222 11 1156777777764
Q ss_pred CCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhh
Q 000945 506 KLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTR 585 (1212)
Q Consensus 506 ~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 585 (1212)
.++.+| .++++++|++|++++|. +..+|. .+++|++|+++++. +..++
T Consensus 142 ~l~~lp---~~~~l~~L~~L~l~~N~-l~~lp~---------------~~~~L~~L~L~~n~-l~~l~------------ 189 (454)
T 1jl5_A 142 QLEKLP---ELQNSSFLKIIDVDNNS-LKKLPD---------------LPPSLEFIAAGNNQ-LEELP------------ 189 (454)
T ss_dssp CCSSCC---CCTTCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEECCSSC-CSSCC------------
T ss_pred CCCCCc---ccCCCCCCCEEECCCCc-CcccCC---------------CcccccEEECcCCc-CCcCc------------
Confidence 566665 25677777777777764 555543 12466666666542 22111
Q ss_pred hcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhh
Q 000945 586 LKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSM 665 (1212)
Q Consensus 586 l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 665 (1212)
.+..+++|+.|++++|.+..+.. ..++|+.|++++| .+..+|.
T Consensus 190 ---------------------------~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n-~l~~lp~--- 232 (454)
T 1jl5_A 190 ---------------------------ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNN-ILEELPE--- 232 (454)
T ss_dssp ---------------------------CCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSS-CCSSCCC---
T ss_pred ---------------------------cccCCCCCCEEECCCCcCCcCCC------CcCcccEEECcCC-cCCcccc---
Confidence 12345777777777776554322 2357888888876 5556653
Q ss_pred hhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCccccc
Q 000945 666 IRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFT 745 (1212)
Q Consensus 666 l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp 745 (1212)
++.+++|++|++++|. +..++. .+++|+.|++.++. +..++. .+++|+.|++++| .+..+|
T Consensus 233 ~~~l~~L~~L~l~~N~-l~~l~~-----------~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N-~l~~l~ 293 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNL-LKTLPD-----------LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSEN-IFSGLS 293 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSSCCS-----------CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSEES
T ss_pred cCCCCCCCEEECCCCc-CCcccc-----------cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCC-ccCccc
Confidence 5778888888888775 443321 13566666666553 222221 2355666666664 233331
Q ss_pred ccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcC
Q 000945 746 SRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFH 825 (1212)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~ 825 (1212)
..+++|+.|++++|.+.++.. ..++|++|++++|.+..+|.. ++
T Consensus 294 --------------------------~~~~~L~~L~l~~N~l~~i~~------~~~~L~~L~Ls~N~l~~lp~~----~~ 337 (454)
T 1jl5_A 294 --------------------------ELPPNLYYLNASSNEIRSLCD------LPPSLEELNVSNNKLIELPAL----PP 337 (454)
T ss_dssp --------------------------CCCTTCCEEECCSSCCSEECC------CCTTCCEEECCSSCCSCCCCC----CT
T ss_pred --------------------------CcCCcCCEEECcCCcCCcccC------CcCcCCEEECCCCcccccccc----CC
Confidence 003456666666555554321 113555555555555554432 34
Q ss_pred ccceeEEEccceeE
Q 000945 826 NLEKLELRWSSYKE 839 (1212)
Q Consensus 826 ~L~~L~l~c~~l~~ 839 (1212)
+|+.|+++.|.++.
T Consensus 338 ~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 338 RLERLIASFNHLAE 351 (454)
T ss_dssp TCCEEECCSSCCSC
T ss_pred cCCEEECCCCcccc
Confidence 45555555444443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.5e-23 Score=255.63 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=111.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccch--HHHhhcCccceeEEEccceeE-eccccchhhcc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRI--GFLERFHNLEKLELRWSSYKE-IFSNEEIVEHA 850 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~--~~l~~l~~L~~L~l~c~~l~~-~~~~~~~~~~~ 850 (1212)
+++|++|++++|.+.+..+ .....+++|+.|++++|.+..++. ..+..+++|+.|+++.|.++. ++. ..+
T Consensus 352 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~ 424 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTC 424 (562)
T ss_dssp CCCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----CCC
T ss_pred CCCceEEECCCCccccchh--hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----hhh
Confidence 5678888888777776443 234567888888888887777653 336788888888888777765 432 123
Q ss_pred ccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcc
Q 000945 851 EMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKS 930 (1212)
Q Consensus 851 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 930 (1212)
..+++|+.|++++|.--..+ +..+. ++|+.|++++| .++.+|..+..+++|+.|++++| .++.+|.. .+..
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~----~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~ 495 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSV----FRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG-VFDR 495 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGG----GSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT-STTT
T ss_pred cCcccCCEEECCCCCCCcch----hhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH-HHhc
Confidence 34788899998887522222 23222 68999999987 67789888888999999999985 78888743 4678
Q ss_pred cccccEEEecCcc
Q 000945 931 LVCLTKLRIDGCR 943 (1212)
Q Consensus 931 l~~L~~L~i~~c~ 943 (1212)
+++|+.|++++|+
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 8899999999887
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3.9e-22 Score=248.73 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=67.3
Q ss_pred eeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcCCC
Q 000945 270 LSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSH 349 (1212)
Q Consensus 270 L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l~~ 349 (1212)
.+-++-+++++|..+. ..+++|||++| .|..+|+..|.++.+|++|++++|.+. ......|.++.+
T Consensus 36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----------~i~~~~f~~L~~ 101 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ-----------TIEDGAYQSLSH 101 (635)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCC-----------EECTTTTTTCTT
T ss_pred EECCCCCcCccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCC-----------CcChhHhcCCCC
Confidence 3555667888887663 47899999999 899999877999999999999999886 223456889999
Q ss_pred CCcceeeecccccCCCC
Q 000945 350 LTTLEIQICDAMILPKG 366 (1212)
Q Consensus 350 L~~L~l~~~~~~~~p~~ 366 (1212)
|++|++++|.+..+|.+
T Consensus 102 L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCEEECTTCCCCEECGG
T ss_pred CCEEEccCCcCCCCCHH
Confidence 99999999887766653
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.5e-23 Score=245.92 Aligned_cols=286 Identities=17% Similarity=0.139 Sum_probs=136.1
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|++|++++|.+..++. ..++|++|++++| .++.++. ++.+++|++|++++|. +..++.
T Consensus 152 l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n-~l~~l~~---~~~l~~L~~L~l~~N~-l~~l~~-------- 212 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNN-QLEELPE---LQNLPFLTAIYADNNS-LKKLPD-------- 212 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSSC-CSSCCC--------
T ss_pred CCCCCEEECCCCcCcccCC------CcccccEEECcCC-cCCcCcc---ccCCCCCCEEECCCCc-CCcCCC--------
Confidence 3555666666554443221 2346666666665 4444442 4666677777776665 333321
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
..++|++|++.++ .+..++. ...+++|+.|++++| ++..+|. .+++
T Consensus 213 ---~~~~L~~L~l~~n-~l~~lp~---~~~l~~L~~L~l~~N-~l~~l~~--------------------------~~~~ 258 (454)
T 1jl5_A 213 ---LPLSLESIVAGNN-ILEELPE---LQNLPFLTTIYADNN-LLKTLPD--------------------------LPPS 258 (454)
T ss_dssp ---CCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSS-CCSSCCS--------------------------CCTT
T ss_pred ---CcCcccEEECcCC-cCCcccc---cCCCCCCCEEECCCC-cCCcccc--------------------------cccc
Confidence 1246666666665 2334432 225677777777775 3444421 1467
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|+.|++++|.+.+++. .+++|+.|++++|.+..+|.. .++|+.|+++.|.++.++. .+++|
T Consensus 259 L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~---------~~~~L 319 (454)
T 1jl5_A 259 LEALNVRDNYLTDLPE------LPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD---------LPPSL 319 (454)
T ss_dssp CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC---------CCTTC
T ss_pred cCEEECCCCcccccCc------ccCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC---------CcCcC
Confidence 7777777777766542 236778888887777765532 3578888888666766532 13578
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|+++++. +..+ |. .+++|+.|++++| .++.+|. .+++|+.|++++| .++.+| ..+.. +..
T Consensus 320 ~~L~Ls~N~-l~~l----p~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~--~ip~~---l~~ 381 (454)
T 1jl5_A 320 EELNVSNNK-LIEL----PA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFP--DIPES---VED 381 (454)
T ss_dssp CEEECCSSC-CSCC----CC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC--CCCTT---CCE
T ss_pred CEEECCCCc-cccc----cc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CCCcCC--CChHH---HHh
Confidence 888888753 4433 22 2578888888876 4556776 4688888888875 555543 12222 333
Q ss_pred EEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCCc
Q 000945 937 LRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVL 1010 (1212)
Q Consensus 937 L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~ 1010 (1212)
|. .+.....+|. .+++|+.|++++++ ++.+|. -+++|+.|.+.+|.-...+|.+..
T Consensus 382 L~--~n~~~~~i~~----------~~~~L~~L~ls~N~-l~~~~~-----iP~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 382 LR--MNSHLAEVPE----------LPQNLKQLHVETNP-LREFPD-----IPESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp EE--CCC-------------------------------------------------------------------
T ss_pred hh--hccccccccc----------ccCcCCEEECCCCc-CCcccc-----chhhHhheeCcCcccCCccccCHH
Confidence 32 2333445542 25889999999875 554432 135788888888876666665543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.8e-22 Score=246.21 Aligned_cols=460 Identities=13% Similarity=0.064 Sum_probs=282.8
Q ss_pred CCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhcc
Q 000945 439 QLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRG 518 (1212)
Q Consensus 439 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 518 (1212)
..++++++++ ++..+|.. .+++|+.|+++++. +..+ .+..++.+++|++|++++| .++.+++ ..+.+
T Consensus 32 ~~~~l~ls~~-~L~~ip~~-------~~~~L~~L~Ls~N~-i~~~--~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNR-NLTHVPKD-------LPPRTKALSLSQNS-ISEL--RMPDISFLSELRVLRLSHN-RIRSLDF-HVFLF 98 (562)
T ss_dssp -CCEEECTTS-CCCSCCTT-------SCTTCCEEECCSSC-CCCC--CGGGTTTCTTCCEEECCSC-CCCEECT-TTTTT
T ss_pred CCcEEEcCCC-CCccCCCC-------CCCCcCEEECCCCC-cccc--ChhhhccCCCccEEECCCC-CCCcCCH-HHhCC
Confidence 3467777766 34444432 23677777777763 2222 2345677788888888874 6666643 44677
Q ss_pred CCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcce
Q 000945 519 LPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREV 598 (1212)
Q Consensus 519 L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~ 598 (1212)
+++|++|+++++. +.++|. . .+++|++|+++++. +..++
T Consensus 99 l~~L~~L~Ls~N~-l~~lp~------------~--~l~~L~~L~Ls~N~-l~~l~------------------------- 137 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNISC------------C--PMASLRHLDLSFND-FDVLP------------------------- 137 (562)
T ss_dssp CTTCCEEECTTSC-CCEECS------------C--CCTTCSEEECCSSC-CSBCC-------------------------
T ss_pred CCCCCEEECCCCc-CCccCc------------c--ccccCCEEECCCCC-ccccC-------------------------
Confidence 8888888888865 666665 2 57778888777753 22211
Q ss_pred ecccccccccccccccccccccceeeccccccceecccCcccccCcCc--cEEEEecCCCc-cccCchhhhhccCC-CcE
Q 000945 599 ILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNL--TRLIVHGCEKL-KYLFPSSMIRNFVQ-LEH 674 (1212)
Q Consensus 599 ~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L--~~L~L~~c~~l-~~l~~~~~l~~l~~-L~~ 674 (1212)
....+..+++|++|++++|.+...... .+++| +.|++++|... ....+.. +..+.. .-.
T Consensus 138 -----------~p~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l~ 200 (562)
T 3a79_B 138 -----------VCKEFGNLTKLTFLGLSAAKFRQLDLL-----PVAHLHLSCILLDLVSYHIKGGETES-LQIPNTTVLH 200 (562)
T ss_dssp -----------CCGGGGGCTTCCEEEEECSBCCTTTTG-----GGTTSCEEEEEEEESSCCCCSSSCCE-EEECCEEEEE
T ss_pred -----------chHhhcccCcccEEecCCCccccCchh-----hhhhceeeEEEeecccccccccCccc-ccccCcceEE
Confidence 011234457788888887765542221 34455 88888776430 2222211 222220 113
Q ss_pred EEeccccccceeecccccccccccccCCccceeecccCC----ccceeccCCCcCCCCCccEEEEecCCCcccccccccc
Q 000945 675 LEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLS----ELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLR 750 (1212)
Q Consensus 675 L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~----~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 750 (1212)
++++++.....+.. .....+++|+.|++.++. .+...... ...++.|+.+++.++.--.......+.
T Consensus 201 l~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~--l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 201 LVFHPNSLFSVQVN-------MSVNALGHLQLSNIKLNDENCQRLMTFLSE--LTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EEECSSSCCCCCCE-------EEESSEEEEEEEEEECCSTTHHHHHHHHHH--HHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred EEecCccchhhhhh-------hcccccceEEEecccccccccchHHHHHHH--HhccCcceEEEecCCcCcHHHHHHHHH
Confidence 34444442222211 122346677777776642 11111100 124567777777765211100000000
Q ss_pred hhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcc---cccccceEeEeecCCccccchHHHhhc---
Q 000945 751 FQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPK---HIFRNLKNLEVVNDESENFRIGFLERF--- 824 (1212)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~---~~~~~L~~L~l~~~~~~~~p~~~l~~l--- 824 (1212)
. ...++|++|++++|.+.+..+..... ..+.+|+.+++..+.+ .+|...+..+
T Consensus 272 ~--------------------~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~ 330 (562)
T 3a79_B 272 F--------------------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAE 330 (562)
T ss_dssp H--------------------HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHT
T ss_pred h--------------------hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhcc
Confidence 0 01358999999998887443322211 3455555555555666 7775444443
Q ss_pred CccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcc--cccCCc
Q 000945 825 HNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLI--NLVPSS 902 (1212)
Q Consensus 825 ~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~ 902 (1212)
.+|+.|+++.+.+..+.. ...+++|+.|+++++.--. ..+..+..+++|++|++++|..-. .+|..+
T Consensus 331 ~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC-------PPSPSSFTFLNFTQNVFTD----SVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp CCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCT----TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred CcceEEEccCCCcccccC-------ccCCCCceEEECCCCcccc----chhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 679999999555644321 1237999999999975222 236778899999999999974332 444567
Q ss_pred cccCCccEEeeccccCccc-ccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccC
Q 000945 903 ASFKNLTTLELWYCQRLMN-LVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCS 981 (1212)
Q Consensus 903 ~~l~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~ 981 (1212)
..+++|+.|++++| .++. +|. ..+..+++|+.|++++|.--..++.. ..++|+.|+++++ .++.+|.
T Consensus 400 ~~l~~L~~L~l~~N-~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~---------l~~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 400 KNMSSLETLDVSLN-SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVFRC---------LPPKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp TTCTTCCEEECTTS-CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGGSS---------CCTTCSEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCC-cCCCccCh-hhhcCcccCCEEECCCCCCCcchhhh---------hcCcCCEEECCCC-cCcccCh
Confidence 88999999999996 5665 653 34577899999999999844444421 1279999999999 6889998
Q ss_pred CCceeecCCccEEEeccCCCccccCcC-CcCCCccceEEeccCcc
Q 000945 982 GNYTLKFPSLEDLFVIECPKMKIFSHR-VLSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 982 ~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~~~~L~~l~~~~~~~ 1025 (1212)
+.. .+++|++|+++++ .+..+|.. +..+++|+.+++++|..
T Consensus 468 ~~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 468 DVT--HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTT--SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred hhc--CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 776 5699999999997 57789988 78899999999998763
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.7e-21 Score=231.25 Aligned_cols=254 Identities=20% Similarity=0.231 Sum_probs=135.1
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|++|++++|.+..+.. + ..+++|+.|++.+ .+..+++ ++.+++|++|++++|. +..+.
T Consensus 133 l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~--~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~--------- 193 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISA--L--SGLTSLQQLSFGN--QVTDLKP---LANLTTLERLDISSNK-VSDIS--------- 193 (466)
T ss_dssp CTTCSEEEEEEEEECCCGG--G--TTCTTCSEEEEEE--SCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------
T ss_pred CCCCCEEECCCCccCCChh--h--ccCCcccEeecCC--cccCchh---hccCCCCCEEECcCCc-CCCCh---------
Confidence 3555555555554333221 1 2456666666643 3333333 4566666666666665 33331
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|++|++.++.- ..... ...+++|+.|++++|. +..++ .+ ..+++
T Consensus 194 ~l~~l~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n~-l~~~~----~l--------------------~~l~~ 244 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQI-SDITP---LGILTNLDELSLNGNQ-LKDIG----TL--------------------ASLTN 244 (466)
T ss_dssp GGGGCTTCSEEECCSSCC-CCCGG---GGGCTTCCEEECCSSC-CCCCG----GG--------------------GGCTT
T ss_pred hhccCCCCCEEEecCCcc-ccccc---ccccCCCCEEECCCCC-cccch----hh--------------------hcCCC
Confidence 123355566665555432 11111 1135666666666652 33321 11 01566
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|+.|++++|.+..+.+ ...+++|+.|++++|.+..++. +..+++|+.|+++.|.++.+++ +..+++|
T Consensus 245 L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L 311 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-------ISNLKNL 311 (466)
T ss_dssp CSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-------GGGCTTC
T ss_pred CCEEECCCCccccchh----hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-------hcCCCCC
Confidence 6777776666665542 3456667777777766666654 5666777777777555555433 2235666
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|++++|. +..+ ..+..+++|+.|++++| .++.+ +.+..+++|+.|++++| .+..+++ +..+++|+.
T Consensus 312 ~~L~L~~n~-l~~~-----~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~ 379 (466)
T 1o6v_A 312 TYLTLYFNN-ISDI-----SPVSSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQ 379 (466)
T ss_dssp SEEECCSSC-CSCC-----GGGGGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCE
T ss_pred CEEECcCCc-CCCc-----hhhccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCE
Confidence 666666653 2222 11456666777777665 33344 23456667777777665 3444432 456666666
Q ss_pred EEecCcc
Q 000945 937 LRIDGCR 943 (1212)
Q Consensus 937 L~i~~c~ 943 (1212)
|++++|+
T Consensus 380 L~l~~n~ 386 (466)
T 1o6v_A 380 LGLNDQA 386 (466)
T ss_dssp EECCCEE
T ss_pred EeccCCc
Confidence 6666665
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.6e-22 Score=233.60 Aligned_cols=143 Identities=17% Similarity=0.128 Sum_probs=87.4
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|+.|++++|.+..+.. ..+++|+.|++++| .++.++ .+.+++|+.|+++++
T Consensus 211 l~~L~~L~Ls~N~l~~ip~-----~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~n---------------- 264 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEIDV-----TPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQT---------------- 264 (457)
T ss_dssp CTTCSEEECCSSCCSCCCC-----TTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTTC----------------
T ss_pred CCCCCEEECcCCcccccCc-----cccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccCC----------------
Confidence 4677777777776655431 24777888888775 555543 355777777776533
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
+|+.|++.+|+.+..++.+ .+++|+.|++++|+.+..+|.. .++
T Consensus 265 ------~L~~L~l~~n~~~~~~~~~----~l~~L~~L~Ls~n~~l~~l~~~--------------------------~~~ 308 (457)
T 3bz5_A 265 ------DLLEIDLTHNTQLIYFQAE----GCRKIKELDVTHNTQLYLLDCQ--------------------------AAG 308 (457)
T ss_dssp ------CCSCCCCTTCTTCCEEECT----TCTTCCCCCCTTCTTCCEEECT--------------------------TCC
T ss_pred ------CCCEEECCCCccCCccccc----ccccCCEEECCCCcccceeccC--------------------------CCc
Confidence 4556666666666665532 4677888888888777666421 234
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeE
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKE 839 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~ 839 (1212)
|+.|++++ +++|++|++++|.+..++ +..+++|+.|+++.|.+++
T Consensus 309 L~~L~l~~---------------~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 309 ITELDLSQ---------------NPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CSCCCCTT---------------CTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCB
T ss_pred ceEechhh---------------cccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCC
Confidence 44444432 245666666666666654 5566677777776666554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=5.7e-21 Score=226.78 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=65.8
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
.++.|+++++.+..+|. +..+.+|++|++++| .+..+|. +.++.+|++|++++|.+. ....+.
T Consensus 47 ~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~-------------~~~~~~ 109 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIA-------------DITPLA 109 (466)
T ss_dssp TCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGT
T ss_pred cccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccc-------------cChhhc
Confidence 68999999999988884 888999999999999 7888887 899999999999998874 122277
Q ss_pred cCCCCCcceeeeccccc
Q 000945 346 LLSHLTTLEIQICDAMI 362 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~ 362 (1212)
.+.+|++|+++.|.+..
T Consensus 110 ~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITD 126 (466)
T ss_dssp TCTTCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCCCCC
Confidence 88888888888776544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=7.2e-21 Score=226.08 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=95.4
Q ss_pred cccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCcc
Q 000945 800 FRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS 879 (1212)
Q Consensus 800 ~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 879 (1212)
.++|+.|++++|.+..+++..+..+++|+.|+++.|.++.+++ ..+..+++|+.|++++|. +..+ .+..+.
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~ 344 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-----NAFWGLTHLLKLNLSQNF-LGSI---DSRMFE 344 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSC-CCEE---CGGGGT
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh-----hHhcCcccCCEEECCCCc-cCCc---ChhHhc
Confidence 3578888888877777766667788888888888767766643 223446788888888764 3332 245567
Q ss_pred ccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 880 ITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 880 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
.+++|++|++++|......|..+..+++|++|++++| .++.+|. ..+..+++|+.|++++|+
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 7888888888887654444666778888888888885 6777753 345778888888888876
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.1e-20 Score=215.54 Aligned_cols=236 Identities=17% Similarity=0.128 Sum_probs=131.6
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|++|++++|.+..+.. + ..+++|+.|++++|.....+++ +..+++|++|++++|. +..+.
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~--~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~~~~--------- 171 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--L--ANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VKDVT--------- 171 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--G--TTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------
T ss_pred CCcCCEEECcCCcccCchh--h--ccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cCCch---------
Confidence 4666666666665444332 1 2467777777777766655433 5667777777777665 33321
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|+. |++++| .+..++. + ..+++
T Consensus 172 ~~~~l~~L~~--------------------------L~l~~n-~l~~~~~----~--------------------~~l~~ 200 (347)
T 4fmz_A 172 PIANLTDLYS--------------------------LSLNYN-QIEDISP----L--------------------ASLTS 200 (347)
T ss_dssp GGGGCTTCSE--------------------------EECTTS-CCCCCGG----G--------------------GGCTT
T ss_pred hhccCCCCCE--------------------------EEccCC-ccccccc----c--------------------cCCCc
Confidence 1222344444 444443 1222210 0 01455
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|+.|++++|.+..+.+ ...+++|++|++++|.+..++. +..+++|+.|+++.|.++.+. .+..+++|
T Consensus 201 L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L 267 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-------AVKDLTKL 267 (347)
T ss_dssp CCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GGTTCTTC
T ss_pred cceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-------hHhcCCCc
Confidence 5566665555554432 3445666666666666666654 566667777777655555432 12235667
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|++++|. +..+ ..+..+++|+.|++++|......|..+..+++|+.|++++|+ ++.+++ +..+++|+.
T Consensus 268 ~~L~l~~n~-l~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~ 337 (347)
T 4fmz_A 268 KMLNVGSNQ-ISDI-----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDS 337 (347)
T ss_dssp CEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSE
T ss_pred CEEEccCCc-cCCC-----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccce
Confidence 777776652 3332 235566777777777765544444455667777777777763 555542 456677777
Q ss_pred EEecCcc
Q 000945 937 LRIDGCR 943 (1212)
Q Consensus 937 L~i~~c~ 943 (1212)
|++++|+
T Consensus 338 L~l~~N~ 344 (347)
T 4fmz_A 338 ADFANQV 344 (347)
T ss_dssp ESSSCC-
T ss_pred eehhhhc
Confidence 7777765
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.4e-21 Score=227.45 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=97.5
Q ss_pred CCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCC
Q 000945 488 LRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLP 567 (1212)
Q Consensus 488 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 567 (1212)
.+++.+++|++|+++++ .++.+| .+..+++|++|++++|. +..++ +..+++|++|+++++.
T Consensus 36 ~~~~~l~~L~~L~Ls~n-~l~~~~---~l~~l~~L~~L~Ls~n~-l~~~~--------------~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-SITDMT---GIEKLTGLTKLICTSNN-ITTLD--------------LSQNTNLTYLACDSNK 96 (457)
T ss_dssp EEHHHHTTCCEEECCSS-CCCCCT---TGGGCTTCSEEECCSSC-CSCCC--------------CTTCTTCSEEECCSSC
T ss_pred cChhHcCCCCEEEccCC-CcccCh---hhcccCCCCEEEccCCc-CCeEc--------------cccCCCCCEEECcCCC
Confidence 45667888888888885 677764 36778888888888875 44432 3456677777766642
Q ss_pred cccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCcc
Q 000945 568 QLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLT 647 (1212)
Q Consensus 568 ~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~ 647 (1212)
+..+ .+..+++|++|++++|.+..++. ..+++|+
T Consensus 97 -l~~~----------------------------------------~~~~l~~L~~L~L~~N~l~~l~~-----~~l~~L~ 130 (457)
T 3bz5_A 97 -LTNL----------------------------------------DVTPLTKLTYLNCDTNKLTKLDV-----SQNPLLT 130 (457)
T ss_dssp -CSCC----------------------------------------CCTTCTTCCEEECCSSCCSCCCC-----TTCTTCC
T ss_pred -Ccee----------------------------------------ecCCCCcCCEEECCCCcCCeecC-----CCCCcCC
Confidence 2111 01334677777777776555432 2467777
Q ss_pred EEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCC
Q 000945 648 RLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKW 727 (1212)
Q Consensus 648 ~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 727 (1212)
+|++++| .++.+ + ++.+++|++|++++|..+..+ ....+++|+.|+++++. +..++ ...+
T Consensus 131 ~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n~-l~~l~----l~~l 190 (457)
T 3bz5_A 131 YLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKITKL----------DVTPQTQLTTLDCSFNK-ITELD----VSQN 190 (457)
T ss_dssp EEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCCCCC----------CCTTCTTCCEEECCSSC-CCCCC----CTTC
T ss_pred EEECCCC-cccee-c---cccCCcCCEEECCCCCccccc----------ccccCCcCCEEECCCCc-cceec----cccC
Confidence 7777765 45544 2 466777777777777545444 12235566666665542 22222 1134
Q ss_pred CCccEEEEecC
Q 000945 728 PMLKKLEVYGC 738 (1212)
Q Consensus 728 ~~L~~L~i~~C 738 (1212)
++|+.|++++|
T Consensus 191 ~~L~~L~l~~N 201 (457)
T 3bz5_A 191 KLLNRLNCDTN 201 (457)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 45555555544
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.6e-20 Score=215.87 Aligned_cols=308 Identities=15% Similarity=0.201 Sum_probs=177.1
Q ss_pred ccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccc
Q 000945 492 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 571 (1212)
Q Consensus 492 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 571 (1212)
.+++|++|+++++ .++.+|. ..+..+++|++|+++++. +..++. ..+..+++|++|+++++. +..
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~-~~~~~l~~L~~L~L~~n~-i~~~~~-----------~~~~~l~~L~~L~L~~n~-l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPA-ALLDSFRQVELLNLNDLQ-IEEIDT-----------YAFAYAHTIQKLYMGFNA-IRY 107 (390)
T ss_dssp GGCCCSEEEEESC-EESEECT-HHHHHCCCCSEEECTTSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CCC
T ss_pred ccCCceEEEecCC-chhhCCh-hHhcccccCcEEECCCCc-ccccCh-----------hhccCCCCcCEEECCCCC-CCc
Confidence 4677888888774 5677764 345777888888887765 554443 134556666666666542 222
Q ss_pred cccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEE
Q 000945 572 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 651 (1212)
Q Consensus 572 ~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 651 (1212)
++. ..+..+++|++|++++|.+..+....+. .+++|++|++
T Consensus 108 ~~~-------------------------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L 148 (390)
T 3o6n_A 108 LPP-------------------------------------HVFQNVPLLTVLVLERNDLSSLPRGIFH--NTPKLTTLSM 148 (390)
T ss_dssp CCT-------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred CCH-------------------------------------HHhcCCCCCCEEECCCCccCcCCHHHhc--CCCCCcEEEC
Confidence 111 1123346666666666655544433222 3666667776
Q ss_pred ecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCcc
Q 000945 652 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 731 (1212)
Q Consensus 652 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~ 731 (1212)
++| .+..+++.. ++.+++|++|++++|. +..+ ....+++|+.|
T Consensus 149 ~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~----------~~~~l~~L~~L------------------------ 191 (390)
T 3o6n_A 149 SNN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHV----------DLSLIPSLFHA------------------------ 191 (390)
T ss_dssp CSS-CCCBCCTTT-TSSCTTCCEEECCSSC-CSBC----------CGGGCTTCSEE------------------------
T ss_pred CCC-ccCccChhh-ccCCCCCCEEECCCCc-CCcc----------cccccccccee------------------------
Confidence 664 344444322 3566667777666664 3322 11224444444
Q ss_pred EEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecC
Q 000945 732 KLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVND 811 (1212)
Q Consensus 732 ~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 811 (1212)
+++++ .+..++ .+++|+.|++++|.+..+.. ..+++|+.|++++|
T Consensus 192 --~l~~n-~l~~~~---------------------------~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 192 --NVSYN-LLSTLA---------------------------IPIAVEELDASHNSINVVRG-----PVNVELTILKLQHN 236 (390)
T ss_dssp --ECCSS-CCSEEE---------------------------CCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSS
T ss_pred --ecccc-cccccC---------------------------CCCcceEEECCCCeeeeccc-----cccccccEEECCCC
Confidence 44443 222221 13455555565555555432 12356666666666
Q ss_pred CccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEec
Q 000945 812 ESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWW 891 (1212)
Q Consensus 812 ~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~ 891 (1212)
.+...+ .+..+++|+.|+++.|.++.+.+ ..+..+++|+.|+++++. +..+ +.....+++|++|++++
T Consensus 237 ~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~-l~~~----~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 237 NLTDTA--WLLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNNR-LVAL----NLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECCSSC-CCEE----ECSSSCCTTCCEEECCS
T ss_pred CCcccH--HHcCCCCccEEECCCCcCCCcCh-----hHccccccCCEEECCCCc-Cccc----CcccCCCCCCCEEECCC
Confidence 655543 25666777777777555655433 223346677777777653 3444 23345677888888887
Q ss_pred CCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 892 CENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 892 c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
| .++.+|+.+..+++|+.|++++| .++.++ +..+++|+.|++++|+
T Consensus 305 n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 305 N-HLLHVERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp S-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred C-cceecCccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 6 45677777777888888888885 466664 3567788888888876
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=3.2e-20 Score=211.60 Aligned_cols=304 Identities=14% Similarity=0.141 Sum_probs=207.8
Q ss_pred ccccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccc
Q 000945 615 VVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 694 (1212)
Q Consensus 615 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 694 (1212)
..+++|+.|+++++.+..+.. + ..+++|++|++++| .++.+++ +..+++|++|++++|. +..++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~--~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~------- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--I--EYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNK-ITDIS------- 104 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--G--GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG-------
T ss_pred hhcccccEEEEeCCccccchh--h--hhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCc-ccCch-------
Confidence 356889999999997665432 2 36899999999997 6777665 6889999999999985 65552
Q ss_pred ccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeec
Q 000945 695 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 774 (1212)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 774 (1212)
....+++|++|++.++. +..++. ...+++|+.|++++|+.+..++. + ..+
T Consensus 105 --~~~~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~----~--------------------~~l 154 (347)
T 4fmz_A 105 --ALQNLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSP----L--------------------SNM 154 (347)
T ss_dssp --GGTTCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGG----G--------------------TTC
T ss_pred --HHcCCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccc----h--------------------hhC
Confidence 24468899999998874 333332 33688999999999977766531 1 127
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
++|++|++++|.+..+.+ ...+++|+.|++++|.+..++. +..+++|+.|+++.+.+..+.+ +..++
T Consensus 155 ~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~~~ 221 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-------VANMT 221 (347)
T ss_dssp TTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCT
T ss_pred CCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-------hhcCC
Confidence 889999998888777653 5578889999999888888776 7788889999888767765543 23478
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCL 934 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 934 (1212)
+|++|++++|. +..++ .+..+++|++|++++| .++.++ .+..+++|+.|++++| .++.++ .+..+++|
T Consensus 222 ~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L 289 (347)
T 4fmz_A 222 RLNSLKIGNNK-ITDLS-----PLANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS---VLNNLSQL 289 (347)
T ss_dssp TCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTC
T ss_pred cCCEEEccCCc-cCCCc-----chhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh---hhcCCCCC
Confidence 88888888864 33331 2667888888888887 344453 4567888888888886 566663 45677888
Q ss_pred cEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCC
Q 000945 935 TKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECP 1000 (1212)
Q Consensus 935 ~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~ 1000 (1212)
+.|++++|......+. ....+++|+.|++++|+ ++.++. .. .+++|++|++++|+
T Consensus 290 ~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~L~~n~-l~~~~~-~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDME-------VIGGLTNLTTLFLSQNH-ITDIRP-LA--SLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSCCCGGGHH-------HHHTCTTCSEEECCSSS-CCCCGG-GG--GCTTCSEESSSCC-
T ss_pred CEEECcCCcCCCcChh-------HhhccccCCEEEccCCc-cccccC-hh--hhhccceeehhhhc
Confidence 8888888863222221 12234555555555554 334333 11 23555555555543
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5.2e-20 Score=225.42 Aligned_cols=308 Identities=15% Similarity=0.200 Sum_probs=178.1
Q ss_pred ccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceecccccEEecccCCcccc
Q 000945 492 SFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQLHSLTLKFLPQLTS 571 (1212)
Q Consensus 492 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 571 (1212)
.+.+++.|+++++ .+..+|+ ..+.++++|++|++++|. +..++. ..+..+++|+.|+|+++. +..
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~-~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n~-l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPA-ALLDSFRQVELLNLNDLQ-IEEIDT-----------YAFAYAHTIQKLYMGFNA-IRY 113 (597)
T ss_dssp GGCCCSEEEESSC-EESEECT-HHHHHCCCCSEEECTTSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CCC
T ss_pred cCCCceEEEeeCC-CCCCcCH-HHHccCCCCcEEECCCCC-CCCCCh-----------HHhcCCCCCCEEECCCCc-CCC
Confidence 4567777877774 5666664 446777888888887765 544443 134556666666666543 222
Q ss_pred cccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeeccccccceecccCcccccCcCccEEEE
Q 000945 572 FYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIV 651 (1212)
Q Consensus 572 ~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 651 (1212)
++. ..+..+++|+.|+|++|.+..++...+. .+++|++|+|
T Consensus 114 ~~~-------------------------------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~l~~L~~L~L 154 (597)
T 3oja_B 114 LPP-------------------------------------HVFQNVPLLTVLVLERNDLSSLPRGIFH--NTPKLTTLSM 154 (597)
T ss_dssp CCT-------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred CCH-------------------------------------HHHcCCCCCCEEEeeCCCCCCCCHHHhc--cCCCCCEEEe
Confidence 111 1123346677777777655554443322 4667777777
Q ss_pred ecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccCCCcCCCCCcc
Q 000945 652 HGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK 731 (1212)
Q Consensus 652 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~ 731 (1212)
++| .+..+++.. ++.+++|++|++++|. +..+ ....+++|+.|++.++
T Consensus 155 s~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~----------~~~~l~~L~~L~l~~n------------------- 202 (597)
T 3oja_B 155 SNN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHV----------DLSLIPSLFHANVSYN------------------- 202 (597)
T ss_dssp CSS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBC----------CGGGCTTCSEEECCSS-------------------
T ss_pred eCC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCc----------ChhhhhhhhhhhcccC-------------------
Confidence 765 445544432 4667777777777665 3332 1223444554444433
Q ss_pred EEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccccceEeEeecC
Q 000945 732 KLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVND 811 (1212)
Q Consensus 732 ~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~ 811 (1212)
.+..++ .+++|+.|++++|.+..+... ..++|+.|++++|
T Consensus 203 --------~l~~l~---------------------------~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n 242 (597)
T 3oja_B 203 --------LLSTLA---------------------------IPIAVEELDASHNSINVVRGP-----VNVELTILKLQHN 242 (597)
T ss_dssp --------CCSEEE---------------------------CCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSS
T ss_pred --------cccccc---------------------------CCchhheeeccCCcccccccc-----cCCCCCEEECCCC
Confidence 222220 134455555555555444321 1245666666665
Q ss_pred CccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEec
Q 000945 812 ESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWW 891 (1212)
Q Consensus 812 ~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~ 891 (1212)
.+...+ .+..+++|+.|+++.|.+..+++ ..+..+++|+.|++++|. +..+ +.....+++|+.|++++
T Consensus 243 ~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~l----~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 243 NLTDTA--WLLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISNNR-LVAL----NLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECTTSC-CCEE----ECSSSCCTTCCEEECCS
T ss_pred CCCCCh--hhccCCCCCEEECCCCccCCCCH-----HHhcCccCCCEEECCCCC-CCCC----CcccccCCCCcEEECCC
Confidence 555532 25666667777766555655533 223346667777776653 3444 33445677888888887
Q ss_pred CCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 892 CENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 892 c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
|. +..+|+.+..+++|+.|++++| .+..++ +..+++|+.|++++|+
T Consensus 311 N~-l~~i~~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 311 NH-LLHVERNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SC-CCCCGGGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CC-CCccCcccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 64 4577777778888888888886 466554 3566788888888877
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2.8e-19 Score=207.13 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=38.2
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEecccccccee
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESI 686 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i 686 (1212)
++|+.|++++|.+..+... .+++|+.|++++| .++..+ .++.+++|++|++++|. +..+
T Consensus 205 ~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGP-----VNVELTILKLQHN-NLTDTA---WLLNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp SSCSEEECCSSCCCEEECC-----CCSSCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCEE
T ss_pred CcceEEECCCCeeeecccc-----ccccccEEECCCC-CCcccH---HHcCCCCccEEECCCCc-CCCc
Confidence 5677777777766554332 3577888888876 455432 26778888888888775 4443
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.6e-19 Score=214.41 Aligned_cols=361 Identities=15% Similarity=0.106 Sum_probs=250.5
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|++|++++|.+..+....+. .+++|++|++++|.....+++.. ++.+++|++|++++|. +..+...
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~------- 97 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDYNQ-FLQLETG------- 97 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT-TTTCTTCCEEECTTCT-TCEECTT-------
T ss_pred CCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECccc-ccccccCCEEeCCCCc-cCccChh-------
Confidence 37899999999988776555443 68999999999986554655533 5889999999999987 5555322
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|++|++.++.--...+.......+++|+.|++++|. +..+++.. .+ ..+++
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~--------------------~~l~~ 155 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPAS-FF--------------------LNMRR 155 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCG-GG--------------------GGCTT
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCccc-cc--------------------CCCCc
Confidence 3345899999999998643333333223468999999999974 44331100 01 12789
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHH--------hhcCccceeEEEccceeEeccccchhh
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFL--------ERFHNLEKLELRWSSYKEIFSNEEIVE 848 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l--------~~l~~L~~L~l~c~~l~~~~~~~~~~~ 848 (1212)
|++|++++|.+.++.+.........+|+.|+++++.+..++...+ ..+++|+.|+++.|.+....+..- .
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~ 233 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--F 233 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH--H
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh--h
Confidence 999999999988876543332233689999999988877765432 246789999999666654332110 0
Q ss_pred ccccccccceEeeCCCccchhh------hccCCCCcc--ccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcc
Q 000945 849 HAEMLTQVKSLKLWELSDLMYI------WKQDSKLDS--ITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLM 920 (1212)
Q Consensus 849 ~~~~l~~L~~L~l~~c~~l~~l------~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 920 (1212)
.....++|+.|++++|...... .......+. ..++|+.|++++|.....+|..+..+++|+.|++++| .++
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~ 312 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EIN 312 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-ccc
Confidence 0111378999999887433211 000111122 2368999999998877777777889999999999996 566
Q ss_pred cccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccC-CCceeecCCccEEEeccC
Q 000945 921 NLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCS-GNYTLKFPSLEDLFVIEC 999 (1212)
Q Consensus 921 ~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~-~~~~~~~~sL~~L~i~~C 999 (1212)
.+++ ..+..+++|+.|++++|. +..++. .....+++|+.|+++++. +..++. ... .+++|++|++++|
T Consensus 313 ~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~L~~N 381 (455)
T 3v47_A 313 KIDD-NAFWGLTHLLKLNLSQNF-LGSIDS------RMFENLDKLEVLDLSYNH-IRALGDQSFL--GLPNLKELALDTN 381 (455)
T ss_dssp EECT-TTTTTCTTCCEEECCSSC-CCEECG------GGGTTCTTCCEEECCSSC-CCEECTTTTT--TCTTCCEEECCSS
T ss_pred ccCh-hHhcCcccCCEEECCCCc-cCCcCh------hHhcCcccCCEEECCCCc-ccccChhhcc--ccccccEEECCCC
Confidence 6643 355788999999999986 444431 123457999999999984 666643 333 4699999999997
Q ss_pred CCccccCcCC-cCCCccceEEeccCcc
Q 000945 1000 PKMKIFSHRV-LSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 1000 ~~l~~lp~~~-~~~~~L~~l~~~~~~~ 1025 (1212)
.++.+|... ..+++|+.+++++|..
T Consensus 382 -~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 382 -QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccccCCHhHhccCCcccEEEccCCCc
Confidence 566777654 7889999999998764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.9e-19 Score=218.76 Aligned_cols=263 Identities=14% Similarity=0.122 Sum_probs=114.4
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++++.|+++++.+..++...+. .+++|+.|+|++| .+..+++.. ++.+++|++|+|++|. +..++..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~------- 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNA-IRYLPPH------- 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CCCCCTT-------
T ss_pred CCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCCc-CCCCCHH-------
Confidence 35566666666655444332221 3556666666654 344444422 3556666666666654 4443221
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
.+..+++|++|+++++ .+..++... ...+++|+.|++++| .+..+++. .+ ..+++
T Consensus 118 ~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~--~~--------------------~~l~~ 172 (597)
T 3oja_B 118 VFQNVPLLTVLVLERN-DLSSLPRGI-FHNTPKLTTLSMSNN-NLERIEDD--TF--------------------QATTS 172 (597)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTT--TT--------------------TTCTT
T ss_pred HHcCCCCCCEEEeeCC-CCCCCCHHH-hccCCCCCEEEeeCC-cCCCCChh--hh--------------------hcCCc
Confidence 1223455555555554 233333221 113455555555554 22222110 00 01345
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|+.|++++|.+..+. ...+++|+.|++++|.+..++ ..++|+.|+++.|.+..+++.. +++|
T Consensus 173 L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~--------~~~L 234 (597)
T 3oja_B 173 LQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV--------NVEL 234 (597)
T ss_dssp CCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC--------CSCC
T ss_pred CcEEECcCCCCCCcC-----hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc--------CCCC
Confidence 555555555444432 223444555555554444332 1234555555544444433211 3445
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|++++|. +.. +..+..+++|+.|++++|...+..|..+..+++|+.|++++| .++.+| .....+++|+.
T Consensus 235 ~~L~L~~n~-l~~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~ 305 (597)
T 3oja_B 235 TILKLQHNN-LTD-----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKV 305 (597)
T ss_dssp CEEECCSSC-CCC-----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCE
T ss_pred CEEECCCCC-CCC-----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC--cccccCCCCcE
Confidence 555554432 111 233444455555555544433333444444455555555443 344433 22233444444
Q ss_pred EEecCcc
Q 000945 937 LRIDGCR 943 (1212)
Q Consensus 937 L~i~~c~ 943 (1212)
|++++|.
T Consensus 306 L~Ls~N~ 312 (597)
T 3oja_B 306 LDLSHNH 312 (597)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 4444443
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=207.18 Aligned_cols=301 Identities=15% Similarity=0.091 Sum_probs=159.1
Q ss_pred cccceeecccccccceeecccCCccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEccCcCcchhhcccccCCcc
Q 000945 467 LLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVD 546 (1212)
Q Consensus 467 ~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 546 (1212)
++++.|+|+++ .+..+ .+..+..+++|++|+|+++ .+..+++ ..+.++++|++|+++++. +..++.
T Consensus 32 ~~l~~L~L~~n-~l~~~--~~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-------- 97 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTL--NQDEFASFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSNR-LKLIPL-------- 97 (477)
T ss_dssp TTCSEEECCSS-CCCEE--CTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCSCCT--------
T ss_pred CCCcEEECCCC-ccceE--CHhHccCCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCCc-CCccCc--------
Confidence 45555555554 22222 1334556666777777664 5555533 345666777777776654 555543
Q ss_pred CCccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceeecc
Q 000945 547 CHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLELC 626 (1212)
Q Consensus 547 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~l~ 626 (1212)
..+..+++|++|+++++.- ..+.. ..+..+++|+.|+++
T Consensus 98 ---~~~~~l~~L~~L~Ls~n~i-~~~~~-------------------------------------~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 98 ---GVFTGLSNLTKLDISENKI-VILLD-------------------------------------YMFQDLYNLKSLEVG 136 (477)
T ss_dssp ---TSSTTCTTCCEEECTTSCC-CEECT-------------------------------------TTTTTCTTCCEEEEC
T ss_pred ---ccccCCCCCCEEECCCCcc-ccCCh-------------------------------------hHccccccCCEEECC
Confidence 1244566666666665421 11100 112345677777777
Q ss_pred ccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccce
Q 000945 627 AISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTF 706 (1212)
Q Consensus 627 ~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~ 706 (1212)
+|.+..+....+. .+++|+.|++++| .++.+++. .+.++++|+.|+++++. +..+... ....+++|+.
T Consensus 137 ~n~l~~~~~~~~~--~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~n~-i~~~~~~-------~~~~l~~L~~ 204 (477)
T 2id5_A 137 DNDLVYISHRAFS--GLNSLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRHLN-INAIRDY-------SFKRLYRLKV 204 (477)
T ss_dssp CTTCCEECTTSST--TCTTCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEESCC-CCEECTT-------CSCSCTTCCE
T ss_pred CCccceeChhhcc--CCCCCCEEECCCC-cCcccChh-HhcccCCCcEEeCCCCc-CcEeChh-------hcccCcccce
Confidence 7766555444433 4677788888775 55555443 34677778888877775 4444221 1222444555
Q ss_pred eecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeecccc
Q 000945 707 LKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKD 786 (1212)
Q Consensus 707 L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 786 (1212)
|++.+++.+..++.... ... +|+.|++++|.
T Consensus 205 L~l~~~~~~~~~~~~~~--~~~-----------------------------------------------~L~~L~l~~n~ 235 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCL--YGL-----------------------------------------------NLTSLSITHCN 235 (477)
T ss_dssp EEEECCTTCCEECTTTT--TTC-----------------------------------------------CCSEEEEESSC
T ss_pred eeCCCCccccccCcccc--cCc-----------------------------------------------cccEEECcCCc
Confidence 55544444444332211 122 45555555554
Q ss_pred ccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCcc
Q 000945 787 IAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSD 866 (1212)
Q Consensus 787 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 866 (1212)
+..++. .....+++|+.|++++|.+..++...+..+++|+.|+++.|.+..+.+ ..+..+++|+.|+++++.
T Consensus 236 l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~- 307 (477)
T 2id5_A 236 LTAVPY--LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-----YAFRGLNYLRVLNVSGNQ- 307 (477)
T ss_dssp CCSCCH--HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-----TTBTTCTTCCEEECCSSC-
T ss_pred ccccCH--HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-----HHhcCcccCCEEECCCCc-
Confidence 444331 112345556666666655555555555666666666666555555433 123335666666666652
Q ss_pred chhhhccCCCCccccCcccEEEEecCCC
Q 000945 867 LMYIWKQDSKLDSITENLESLEVWWCEN 894 (1212)
Q Consensus 867 l~~l~~~~~~~~~~l~~L~~L~l~~c~~ 894 (1212)
+..++ +..+..+++|+.|++++|+.
T Consensus 308 l~~~~---~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 308 LTTLE---ESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSCCC---GGGBSCGGGCCEEECCSSCE
T ss_pred CceeC---HhHcCCCcccCEEEccCCCc
Confidence 33331 23345667777777776653
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=206.02 Aligned_cols=204 Identities=18% Similarity=0.155 Sum_probs=106.6
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+.+ ..+..+++|+.|++++|.+..+|...+..+++|+.|+++.|.+..+++ ..+..+
T Consensus 127 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l 199 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRL 199 (477)
T ss_dssp CTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----TCSCSC
T ss_pred cccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----hhcccC
Confidence 5667777777766666543 233456777777777777777777667777777777777555554432 112234
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++ |..++.+|+......+|+.|++++| .++.+|. ..+..+++
T Consensus 200 ~~L~~L~l~~----------------------------~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 249 (477)
T 2id5_A 200 YRLKVLEISH----------------------------WPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY-LAVRHLVY 249 (477)
T ss_dssp TTCCEEEEEC----------------------------CTTCCEECTTTTTTCCCSEEEEESS-CCCSCCH-HHHTTCTT
T ss_pred cccceeeCCC----------------------------CccccccCcccccCccccEEECcCC-cccccCH-HHhcCccc
Confidence 4445555544 4444444444333344444444443 3444331 12344444
Q ss_pred ccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcC-CcCC
Q 000945 934 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHR-VLST 1012 (1212)
Q Consensus 934 L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~~ 1012 (1212)
|+.|++++|. +..++.. ....+++|+.|+++++. +..++..... .+++|++|++++| .+..+|.. +..+
T Consensus 250 L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 250 LRFLNLSYNP-ISTIEGS------MLHELLRLQEIQLVGGQ-LAVVEPYAFR-GLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp CCEEECCSSC-CCEECTT------SCTTCTTCCEEECCSSC-CSEECTTTBT-TCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred cCeeECCCCc-CCccChh------hccccccCCEEECCCCc-cceECHHHhc-CcccCCEEECCCC-cCceeCHhHcCCC
Confidence 5555554443 2222210 11224445555555442 3333222211 3467777777776 45555543 3556
Q ss_pred CccceEEeccCc
Q 000945 1013 PRLREVRQNWGL 1024 (1212)
Q Consensus 1013 ~~L~~l~~~~~~ 1024 (1212)
++|+.+++++|.
T Consensus 320 ~~L~~L~l~~N~ 331 (477)
T 2id5_A 320 GNLETLILDSNP 331 (477)
T ss_dssp GGCCEEECCSSC
T ss_pred cccCEEEccCCC
Confidence 777777777654
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=4.7e-20 Score=227.45 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=70.0
Q ss_pred hcCccceeEEEccceeEeccccchhhccccccccceEeeC-----CCccchhhhc--cCCCCccccCcccEEEEecCCCc
Q 000945 823 RFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLW-----ELSDLMYIWK--QDSKLDSITENLESLEVWWCENL 895 (1212)
Q Consensus 823 ~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~l~~--~~~~~~~~l~~L~~L~l~~c~~l 895 (1212)
.+++|+.|.++|+.++.... ......+++|+.|+++ +|..+...+. ..+..+..+++|+.|++++ .+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAAL----ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHH----HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred hchhHHHHHHhcCCcCHHHH----HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 46777777655666543211 0111235677777776 4444442210 0011134566777777755 22
Q ss_pred cc-ccCCcc-ccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccC
Q 000945 896 IN-LVPSSA-SFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERL 973 (1212)
Q Consensus 896 ~~-lp~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 973 (1212)
+. .+..+. .+++|+.|++++|. ++......+...+++|+.|++++|+.-..... .....+++|+.|++++|
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL------ANASKLETMRSLWMSSC 516 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH------HTGGGGGGSSEEEEESS
T ss_pred cHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH------HHHHhCCCCCEEeeeCC
Confidence 22 111222 26677777777764 43332223335567777777777764211110 01123567777777777
Q ss_pred CC
Q 000945 974 EN 975 (1212)
Q Consensus 974 ~~ 975 (1212)
+.
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.8e-20 Score=227.17 Aligned_cols=310 Identities=15% Similarity=0.085 Sum_probs=165.6
Q ss_pred ccccceeeccccccceecccCcc--cccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLA--AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEE 694 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~--~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 694 (1212)
+++|++|+++++.+..+....++ ...+++|+.|++++|. +..++ ..++.+++|++|+++++....... ..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~-----~~ 262 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELV--GFFKAAANLEEFCGGSLNEDIGMP-----EK 262 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH--HHHHHCTTCCEEEECBCCCCTTCT-----TS
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH--HHHhhhhHHHhhcccccccccchH-----HH
Confidence 46677777776644311111000 0246777777777753 44443 236777788888777533221100 00
Q ss_pred ccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeec
Q 000945 695 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 774 (1212)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 774 (1212)
......+++|+.|.+.++.. ..++. ....+++|++|++++|. +.... ... .+ ..+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~-~~l~~--~~~~~~~L~~L~Ls~~~-l~~~~--~~~--~~-----------------~~~ 317 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGP-NEMPI--LFPFAAQIRKLDLLYAL-LETED--HCT--LI-----------------QKC 317 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCT-TTGGG--GGGGGGGCCEEEETTCC-CCHHH--HHH--HH-----------------TTC
T ss_pred HHHhhccccccccCccccch-hHHHH--HHhhcCCCcEEecCCCc-CCHHH--HHH--HH-----------------HhC
Confidence 11233466777777765421 11111 11246778888888876 43220 000 00 126
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeec-----------CCcccc-chHHHhhcCccceeEEEccceeEecc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN-----------DESENF-RIGFLERFHNLEKLELRWSSYKEIFS 842 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-p~~~l~~l~~L~~L~l~c~~l~~~~~ 842 (1212)
++|+.|+++ +.+..... ......+++|++|++++ +.++.. .......+++|+.|+++|+.++....
T Consensus 318 ~~L~~L~L~-~~~~~~~l-~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp TTCCEEEEE-GGGHHHHH-HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred cCCCEEecc-CccCHHHH-HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 778888876 33322111 01123467788888882 344322 12234567888888888777653211
Q ss_pred ccchhhccccccccceEeeCC---Cccchhhhcc--CCCCccccCcccEEEEecCCC-ccc-ccCCc-cccCCccEEeec
Q 000945 843 NEEIVEHAEMLTQVKSLKLWE---LSDLMYIWKQ--DSKLDSITENLESLEVWWCEN-LIN-LVPSS-ASFKNLTTLELW 914 (1212)
Q Consensus 843 ~~~~~~~~~~l~~L~~L~l~~---c~~l~~l~~~--~~~~~~~l~~L~~L~l~~c~~-l~~-lp~~~-~~l~~L~~L~l~ 914 (1212)
......+++|+.|++++ |..+...+.. .+..+..+++|++|++++|.. ++. .+..+ ..+++|+.|+++
T Consensus 396 ----~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 396 ----ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp ----HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred ----HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 11112367788888874 3444432100 011245678888888887663 221 11112 337788888888
Q ss_pred cccCcccccchhhhcccccccEEEecCcchhhH--hhccCccccccceeccchhhhhhccCC
Q 000945 915 YCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTE--IISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 915 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
+|+ ++.......+..+++|+.|++++|+ +.. ++ .....+++|+.|++++|.
T Consensus 472 ~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-------~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-------AAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-------HHHHHCSSCCEEEEESCB
T ss_pred CCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-------HHHHhcCccCeeECcCCc
Confidence 764 5443223456778888888888887 322 22 112246888888888886
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2e-19 Score=221.61 Aligned_cols=352 Identities=14% Similarity=0.041 Sum_probs=217.0
Q ss_pred cccccceeecccccccee---cccCcccccCcCccEEEEecCCCccccCc---hhhhhccCCCcEEEeccccccceeecc
Q 000945 616 VFPNLETLELCAISTEKI---WCNQLAAVYSQNLTRLIVHGCEKLKYLFP---SSMIRNFVQLEHLEICYCSSLESIVGK 689 (1212)
Q Consensus 616 ~~~~L~~L~l~~~~l~~~---~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~l~~l~~L~~L~l~~~~~l~~i~~~ 689 (1212)
.+++|++|+|++|.+... |...+. ..+++|++|+++++. +..+.. ..++.++++|++|++++|. +..++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~-- 236 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELA-QHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELV-- 236 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHH-HHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH--
T ss_pred hCCCCCEEECccccccCcchhHHHHHH-hcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH--
Confidence 358899999998854322 222211 358999999998764 431111 1235789999999999986 43332
Q ss_pred cccccccccccCCccceeecccCCcccee-ccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCcccccee
Q 000945 690 ESGEEATTTFVFPKVTFLKLWNLSELKTF-YPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALF 768 (1212)
Q Consensus 690 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~-~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~ 768 (1212)
.....+++|++|.+..+...... ........+++|+.|.+.++. ...+|..
T Consensus 237 ------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~--------------------- 288 (592)
T 3ogk_B 237 ------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL--------------------- 288 (592)
T ss_dssp ------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG---------------------
T ss_pred ------HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH---------------------
Confidence 13445799999999864322111 011112356788888887752 2222110
Q ss_pred eeeeecccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEE-----------ccce
Q 000945 769 LVEKVTSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELR-----------WSSY 837 (1212)
Q Consensus 769 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~-----------c~~l 837 (1212)
...+++|++|++++|.+...... .....+++|++|+++++.........+..+++|+.|+++ |+.+
T Consensus 289 --~~~~~~L~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 289 --FPFAAQIRKLDLLYALLETEDHC-TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp --GGGGGGCCEEEETTCCCCHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred --HhhcCCCcEEecCCCcCCHHHHH-HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 01278999999998875443211 113568899999999643333334456778999999999 6666
Q ss_pred eEeccccchhhccccccccceEeeCCCccchhhhccCCCCcc-ccCcccEEEEec---CCCcccccC------CccccCC
Q 000945 838 KEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS-ITENLESLEVWW---CENLINLVP------SSASFKN 907 (1212)
Q Consensus 838 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~-~l~~L~~L~l~~---c~~l~~lp~------~~~~l~~ 907 (1212)
+.. +.......+++|++|++ .|..+..- .+..+. .+++|+.|++++ |+.++..|. .+..+++
T Consensus 366 ~~~----~~~~l~~~~~~L~~L~l-~~~~l~~~---~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 366 SQR----GLIALAQGCQELEYMAV-YVSDITNE---SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp CHH----HHHHHHHHCTTCSEEEE-EESCCCHH---HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred CHH----HHHHHHhhCccCeEEEe-ecCCccHH---HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 532 11122234789999999 44444432 122333 378999999984 667776432 2456899
Q ss_pred ccEEeeccccC-cccccchhhhcccccccEEEecCcchhh-HhhccCccccccceeccchhhhhhccCCCccc--ccCCC
Q 000945 908 LTTLELWYCQR-LMNLVTSSTAKSLVCLTKLRIDGCRMLT-EIISKEEDVAEDEIVFSKLKWVSLERLENLTS--FCSGN 983 (1212)
Q Consensus 908 L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~--l~~~~ 983 (1212)
|+.|++++|.+ ++......+...+++|+.|++++|..-. .++. ....+++|+.|++++|+ +.. ++...
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 509 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME-------FSRGCPNLQKLEMRGCC-FSERAIAAAV 509 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH-------HHTCCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH-------HHhcCcccCeeeccCCC-CcHHHHHHHH
Confidence 99999988764 4443333445668889999999887221 1221 11346889999999997 433 22211
Q ss_pred ceeecCCccEEEeccCCCccccC--cCCcCCCccceEEecc
Q 000945 984 YTLKFPSLEDLFVIECPKMKIFS--HRVLSTPRLREVRQNW 1022 (1212)
Q Consensus 984 ~~~~~~sL~~L~i~~C~~l~~lp--~~~~~~~~L~~l~~~~ 1022 (1212)
..+++|++|++++|+ +..-. .-...+|.+....+..
T Consensus 510 --~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 510 --TKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp --HHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred --HhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 146899999999998 43221 1123466666655543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=2.2e-18 Score=193.40 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=189.5
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
.++++.|+++++.+..++. ....+++|++|++++|.+..+|.. +..+++|+.|+++.|.++.++. .+..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~------~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPA------SIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCCS---CGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCG------GGGGC
T ss_pred ccceeEEEccCCCchhcCh---hhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcH------HHhcC
Confidence 4789999999999997763 355689999999999999999876 7899999999999888876542 34568
Q ss_pred cccceEeeCCCccchhhhccC-----CCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhh
Q 000945 854 TQVKSLKLWELSDLMYIWKQD-----SKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTA 928 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~-----~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 928 (1212)
++|+.|++++|..+..++... ...+..+++|++|++++| .++.+|..+..+++|+.|++++| .++.+|. .+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~--~l 225 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGP--AI 225 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCG--GG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCch--hh
Confidence 999999999988777663211 112345999999999997 45689988999999999999996 6777773 46
Q ss_pred cccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcC
Q 000945 929 KSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHR 1008 (1212)
Q Consensus 929 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~ 1008 (1212)
..+++|+.|++++|.....+|. ....+++|+.|++++|..+..+|.... .+++|++|++++|+.+..+|.+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~-------~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPP-------IFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCC-------CTTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEEECTTCTTCCCCCGG
T ss_pred ccCCCCCEEECcCCcchhhhHH-------HhcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEEeCCCCCchhhccHH
Confidence 8899999999999997777663 345589999999999999999998765 4699999999999999999999
Q ss_pred CcCCCccceEEeccC
Q 000945 1009 VLSTPRLREVRQNWG 1023 (1212)
Q Consensus 1009 ~~~~~~L~~l~~~~~ 1023 (1212)
+..+++|+.+.+..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 999999999998743
No 45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.3e-19 Score=221.26 Aligned_cols=231 Identities=12% Similarity=-0.034 Sum_probs=131.0
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEE---------ccceeEecccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELR---------WSSYKEIFSNE 844 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~---------c~~l~~~~~~~ 844 (1212)
+++|++|++++|.+...... .....+++|++|+++++............+++|+.|+++ |+.++..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~---- 362 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ---- 362 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----
T ss_pred hCCCCEEEccCCCCCHHHHH-HHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH----
Confidence 56777777776664432110 112356778888888762212222334568899999994 3444321
Q ss_pred chhhccccccccceEeeCCCccchhhhccCCCCc-cccCcccEEEEe-----cCCCcccccC------CccccCCccEEe
Q 000945 845 EIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLD-SITENLESLEVW-----WCENLINLVP------SSASFKNLTTLE 912 (1212)
Q Consensus 845 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~-~~l~~L~~L~l~-----~c~~l~~lp~------~~~~l~~L~~L~ 912 (1212)
+.......+++|+.|.+ +|..+.... +..+ ..+++|+.|+++ +|..++..|. .+..+++|+.|+
T Consensus 363 ~l~~l~~~~~~L~~L~~-~~~~l~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLY-FCRQMTNAA---LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HHHHHHHHCTTCCEEEE-EESCCCHHH---HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHhchhHHHHHH-hcCCcCHHH---HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 11111223688888855 454444321 1222 257889999999 6777775443 245678999999
Q ss_pred eccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCcc
Q 000945 913 LWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLE 992 (1212)
Q Consensus 913 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~ 992 (1212)
+++ .++......+...+++|+.|++++|..-...+. .....+++|+.|++++|+. ...........+++|+
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMR 509 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSS
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCC
Confidence 966 555443334444578899999998873222110 0112368888888888874 3221110111357888
Q ss_pred EEEeccCCCccccCcCC-cCCCccceEEecc
Q 000945 993 DLFVIECPKMKIFSHRV-LSTPRLREVRQNW 1022 (1212)
Q Consensus 993 ~L~i~~C~~l~~lp~~~-~~~~~L~~l~~~~ 1022 (1212)
+|++++|+....-...+ ..+|.|+...+..
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 89998887632211112 3456666555543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=6.5e-17 Score=182.48 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=110.3
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
++|+.|++++|.+..+....+. .+++|++|+|++| .++.+.|.. ++.+++|++|+++++. +..++.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~--------- 117 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQ-LKELPE--------- 117 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CSBCCS---------
T ss_pred CCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCc-CCccCh---------
Confidence 4566666666655544433332 4666667776664 444443322 4566777777776665 444421
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
..+++|++|++.++. +..+.... ...+++|+.|++++|. +.........+ ..+++|
T Consensus 118 -~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------------------~~l~~L 173 (330)
T 1xku_A 118 -KMPKTLQELRVHENE-ITKVRKSV-FNGLNQMIVVELGTNP-LKSSGIENGAF--------------------QGMKKL 173 (330)
T ss_dssp -SCCTTCCEEECCSSC-CCBBCHHH-HTTCTTCCEEECCSSC-CCGGGBCTTGG--------------------GGCTTC
T ss_pred -hhcccccEEECCCCc-ccccCHhH-hcCCccccEEECCCCc-CCccCcChhhc--------------------cCCCCc
Confidence 123556666665542 22221100 1135566666666552 22110000000 114566
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
++|++++|.+..++. ..+++|++|++++|.+..+++..+..+++|+.|+++.|.++.+++ ..+..+++|+
T Consensus 174 ~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~ 243 (330)
T 1xku_A 174 SYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLR 243 (330)
T ss_dssp CEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-----TTGGGSTTCC
T ss_pred CEEECCCCccccCCc-----cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-----hhccCCCCCC
Confidence 666666666655432 112566666666666666655556666666666666555555432 1122345555
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecC
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWC 892 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c 892 (1212)
.|++++|. +..+ |..+..+++|++|++++|
T Consensus 244 ~L~L~~N~-l~~l----p~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 244 ELHLNNNK-LVKV----PGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp EEECCSSC-CSSC----CTTTTTCSSCCEEECCSS
T ss_pred EEECCCCc-CccC----ChhhccCCCcCEEECCCC
Confidence 55555542 3332 334445555555555554
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=4.7e-17 Score=182.45 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=99.2
Q ss_pred ccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCc
Q 000945 799 IFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLD 878 (1212)
Q Consensus 799 ~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 878 (1212)
.+++|++|++++|.+..+|.. +..+++|+.|+++.|.++.+++ .+..+++|+.|++++|.....+ |..+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~------~l~~l~~L~~L~Ls~n~~~~~~----p~~~ 249 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGP------AIHHLPKLEELDLRGCTALRNY----PPIF 249 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCG------GGGGCTTCCEEECTTCTTCCBC----CCCT
T ss_pred cCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCch------hhccCCCCCEEECcCCcchhhh----HHHh
Confidence 466777777777777777765 7778888888888667766543 2345778888888887765554 5667
Q ss_pred cccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecC
Q 000945 879 SITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDG 941 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 941 (1212)
..+++|++|++++|..++.+|..+..+++|+.|+|++|+.+..+| ..+..+++|+.+.+..
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCG
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCH
Confidence 788888888888888888888888888888888888888888887 5667888888887764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=5.8e-17 Score=182.88 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=68.3
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
.+++++++++.+..+|..+. .++++|++++| .+..+|...+.++.+|++|++++|.+. ...+..+.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS-----------KISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC-----------CBCTTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCC-----------eeCHHHhc
Confidence 68888999988888887664 57889999999 788888866889999999999998875 33356677
Q ss_pred cCCCCCcceeeecccccCCC
Q 000945 346 LLSHLTTLEIQICDAMILPK 365 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~ 365 (1212)
.+.+|++|+++.|.+..+|.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~ 117 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPE 117 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCS
T ss_pred CCCCCCEEECCCCcCCccCh
Confidence 88888888888777665544
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=6.9e-17 Score=182.34 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=73.9
Q ss_pred cceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccc
Q 000945 776 KLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQ 855 (1212)
Q Consensus 776 ~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~ 855 (1212)
+|+.|++++|.+..++. ..+++|++|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..+++
T Consensus 173 ~L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~ 242 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-----GSLSFLPT 242 (332)
T ss_dssp CCSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-----TGGGGCTT
T ss_pred ccCEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-----hHhhCCCC
Confidence 56666666666555432 112466666666666666655555666666666666555554432 11233555
Q ss_pred cceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCc-c------ccCCccEEeeccccCcc-cccchhh
Q 000945 856 VKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSS-A------SFKNLTTLELWYCQRLM-NLVTSST 927 (1212)
Q Consensus 856 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~------~l~~L~~L~l~~c~~l~-~l~~~~~ 927 (1212)
|+.|++++|. +..+ |..+..+++|+.|++++|. ++.++... . .+++|+.|++++++-.. .+ ....
T Consensus 243 L~~L~L~~N~-l~~l----p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~-~~~~ 315 (332)
T 2ft3_A 243 LRELHLDNNK-LSRV----PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV-QPAT 315 (332)
T ss_dssp CCEEECCSSC-CCBC----CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS-CGGG
T ss_pred CCEEECCCCc-Ceec----ChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccccc-Cccc
Confidence 6666665542 3333 3445555666666666542 33443221 1 13455666666654221 11 1233
Q ss_pred hcccccccEEEecCc
Q 000945 928 AKSLVCLTKLRIDGC 942 (1212)
Q Consensus 928 ~~~l~~L~~L~i~~c 942 (1212)
+..+++|+.|++++|
T Consensus 316 ~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNY 330 (332)
T ss_dssp GTTBCCSTTEEC---
T ss_pred ccccchhhhhhcccc
Confidence 445555666655554
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=5e-17 Score=183.50 Aligned_cols=268 Identities=13% Similarity=0.079 Sum_probs=169.2
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
.+|+.++++++.+..++.. ..++|+.|++++| .++.+++.. ++++++|++|++++|. +..+... .
T Consensus 33 c~l~~l~~~~~~l~~ip~~-----~~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~-------~ 97 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-----ISPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNNK-ISKIHEK-------A 97 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-----CCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCEECGG-------G
T ss_pred ccCCEEECCCCCccccCCC-----CCCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCCc-cCccCHh-------H
Confidence 3688888888877665543 2578999999886 566766543 5788999999999886 6665332 2
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
...+++|++|+++++. +..++.. .+++|++|++++| .+..+++. .+ ..+++|
T Consensus 98 ~~~l~~L~~L~L~~n~-l~~l~~~----~~~~L~~L~l~~n-~i~~~~~~--~~--------------------~~l~~L 149 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNH-LVEIPPN----LPSSLVELRIHDN-RIRKVPKG--VF--------------------SGLRNM 149 (332)
T ss_dssp STTCTTCCEEECCSSC-CCSCCSS----CCTTCCEEECCSS-CCCCCCSG--GG--------------------SSCSSC
T ss_pred hhCcCCCCEEECCCCc-CCccCcc----ccccCCEEECCCC-ccCccCHh--Hh--------------------CCCccC
Confidence 3457888888888763 4444432 2377888888876 34444311 01 126788
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
+.|++++|.+............+ +|++|++++|.+..+|... .++|+.|+++.|.++.+++ ..+..+++|+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~-----~~l~~l~~L~ 220 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIEL-----EDLLRYSKLY 220 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCT-----TSSTTCTTCS
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCH-----HHhcCCCCCC
Confidence 88888888776432212223334 7888888887777777653 2677788887666665543 2233467777
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcc-----cc
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKS-----LV 932 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~-----l~ 932 (1212)
.|+++++. +..+ .+..+..+++|++|++++| .++.+|..+..+++|+.|++++| .++.++...+... ..
T Consensus 221 ~L~L~~N~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 221 RLGLGHNQ-IRMI---ENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CCBCCSSC-CCCC---CTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred EEECCCCc-CCcC---ChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 77777753 3322 2345667777777777775 45577777777777777777774 5666654322211 34
Q ss_pred cccEEEecCcc
Q 000945 933 CLTKLRIDGCR 943 (1212)
Q Consensus 933 ~L~~L~i~~c~ 943 (1212)
+|+.|++++++
T Consensus 295 ~l~~L~l~~N~ 305 (332)
T 2ft3_A 295 YYNGISLFNNP 305 (332)
T ss_dssp CBSEEECCSSS
T ss_pred cccceEeecCc
Confidence 56666666665
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=3.6e-16 Score=188.65 Aligned_cols=140 Identities=17% Similarity=0.124 Sum_probs=94.4
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.++.++ ..+++|+.|++++|.+..+|.. +++|+.|+++.|.++.++.. +
T Consensus 160 ~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~---------~ 220 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL---------P 220 (622)
T ss_dssp CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC---------C
T ss_pred cCCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC---------C
Confidence 456677777777666653 2356777777777777766643 46777777776666654421 4
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++| .+..+ | ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+| ..+..+++
T Consensus 221 ~~L~~L~Ls~N-~L~~l----p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~ 285 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSL----P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP--ESLIHLSS 285 (622)
T ss_dssp TTCCEEECCSS-CCSCC----C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC--GGGGGSCT
T ss_pred CCCCEEEccCC-ccCcC----C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC--HHHhhccc
Confidence 67788887775 34444 2 34577888888876 5667775 5678888888885 677776 44677888
Q ss_pred ccEEEecCcchhhH
Q 000945 934 LTKLRIDGCRMLTE 947 (1212)
Q Consensus 934 L~~L~i~~c~~l~~ 947 (1212)
|+.|++++|+.-..
T Consensus 286 L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 286 ETTVNLEGNPLSER 299 (622)
T ss_dssp TCEEECCSCCCCHH
T ss_pred cCEEEecCCCCCCc
Confidence 88888888874333
No 52
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.69 E-value=3.3e-17 Score=196.87 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=95.4
Q ss_pred cchHHHHHHHHHHhCC---CCceEEEEEecCCCchhHHHHHHHH--HhhhcCCCCEEEEEEecCCC--CHHHHHHHHHHH
Q 000945 152 ESRKSILNDALDALSN---PNVNVIGLCGLGGIGKTTLAKIVFY--QAKKLKLCDEVVFVEVSQTP--DVKRIQGDIADQ 224 (1212)
Q Consensus 152 ~gr~~~~~~l~~~L~~---~~~~vi~I~GmgGiGKTTLA~~vyn--~~~v~~~F~~~~wv~vs~~~--~~~~l~~~il~~ 224 (1212)
+||+.++++|.++|.+ .+++||+|||||||||||||+++|+ +.+++.+|+.++||+|++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999999999973 3689999999999999999999999 67888999999999999985 899999999999
Q ss_pred hcCccc--------CCChhHHHHHHHHHHHcCCcEE-EecCcccccc
Q 000945 225 LGLYIC--------EGSESERAMVLCGLLKKGKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 225 l~~~~~--------~~~~~~~~~~l~~~L~~~kr~L-VLDDVw~~~~ 262 (1212)
++.... ..+....+..+++.|..+|||| ||||||+..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~ 257 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET 257 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh
Confidence 976521 1233456889999998624999 9999999875
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=4.4e-16 Score=187.80 Aligned_cols=256 Identities=19% Similarity=0.123 Sum_probs=189.2
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
.+++.|++++++++.++... .++|+.|+|++| .++.+|+ .+++|++|++++|. +..++.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-----~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--------- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-----PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV--------- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-----CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC---------
T ss_pred CCCcEEEecCCCcCccChhh-----CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC---------
Confidence 46899999999887665432 478999999997 5777655 47899999999987 666632
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
.+++|++|+++++. +..++. .+++|+.|++++| ++..+|. .+++|
T Consensus 99 --~l~~L~~L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N-~l~~lp~--------------------------~l~~L 143 (622)
T 3g06_A 99 --LPPGLLELSIFSNP-LTHLPA-----LPSGLCKLWIFGN-QLTSLPV--------------------------LPPGL 143 (622)
T ss_dssp --CCTTCCEEEECSCC-CCCCCC-----CCTTCCEEECCSS-CCSCCCC--------------------------CCTTC
T ss_pred --CCCCCCEEECcCCc-CCCCCC-----CCCCcCEEECCCC-CCCcCCC--------------------------CCCCC
Confidence 47899999998763 444433 4688999999886 4666631 15789
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
++|++++|.+.+++. .+++|+.|++++|.+..+| ..+++|+.|+++.|.++.++.. +++|+
T Consensus 144 ~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---------~~~L~ 204 (622)
T 3g06_A 144 QELSVSDNQLASLPA------LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---------PSELY 204 (622)
T ss_dssp CEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---------CTTCC
T ss_pred CEEECcCCcCCCcCC------ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---------cchhh
Confidence 999999988887642 3578999999998888888 3478899999997778765531 57889
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEE
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKL 937 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 937 (1212)
.|++++|. +..++ . .+++|+.|++++| .++.+| ..+++|+.|++++| .++.+|. .+++|+.|
T Consensus 205 ~L~L~~N~-l~~l~----~---~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L 266 (622)
T 3g06_A 205 KLWAYNNR-LTSLP----A---LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSL 266 (622)
T ss_dssp EEECCSSC-CSSCC----C---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEE
T ss_pred EEECcCCc-ccccC----C---CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEE
Confidence 99888864 44442 2 2478889999886 566676 45688899999885 6777763 56778888
Q ss_pred EecCcchhhHhhccCccccccceeccchhhhhhccCC
Q 000945 938 RIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 938 ~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
++++|. +..+|. ....+++|+.|++++++
T Consensus 267 ~Ls~N~-L~~lp~-------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 267 SVYRNQ-LTRLPE-------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSSC-CCSCCG-------GGGGSCTTCEEECCSCC
T ss_pred eCCCCC-CCcCCH-------HHhhccccCEEEecCCC
Confidence 888885 556652 23456778888888775
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=5.5e-17 Score=181.49 Aligned_cols=289 Identities=15% Similarity=0.112 Sum_probs=151.3
Q ss_pred ccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccccc
Q 000945 619 NLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTT 698 (1212)
Q Consensus 619 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 698 (1212)
.++.++++++.+.......+ ..+++|++|++++| .++.+++.. ++.+++|++|++++|. +..+. ..
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~--~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~---------~~ 76 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLR--QSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNV-LYETL---------DL 76 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHH--TTGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTSC-CEEEE---------EE
T ss_pred ceeEeeccccchhhhHHHHh--ccCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCCc-CCcch---------hh
Confidence 34455555554433222211 14678888888886 566665533 4788888888888876 44332 12
Q ss_pred ccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccce
Q 000945 699 FVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLE 778 (1212)
Q Consensus 699 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 778 (1212)
..+++|++|+++++. +..++ . .++|+
T Consensus 77 ~~l~~L~~L~Ls~n~-l~~l~------~-----------------------------------------------~~~L~ 102 (317)
T 3o53_A 77 ESLSTLRTLDLNNNY-VQELL------V-----------------------------------------------GPSIE 102 (317)
T ss_dssp TTCTTCCEEECCSSE-EEEEE------E-----------------------------------------------CTTCC
T ss_pred hhcCCCCEEECcCCc-ccccc------C-----------------------------------------------CCCcC
Confidence 234555555555442 22221 1 23444
Q ss_pred eeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccce
Q 000945 779 ELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKS 858 (1212)
Q Consensus 779 ~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~ 858 (1212)
.|++++|.+..+.+ ..+++|++|++++|.+..+++..+..+++|+.|+++.|.++.+.+.. ....+++|+.
T Consensus 103 ~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~ 173 (317)
T 3o53_A 103 TLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEH 173 (317)
T ss_dssp EEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCE
T ss_pred EEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCE
Confidence 44444444444332 12344555555555555554444555555555555544554443211 0112455666
Q ss_pred EeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEE
Q 000945 859 LKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLR 938 (1212)
Q Consensus 859 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 938 (1212)
|++++|. +..++ ....+++|++|++++| .++.+|+.+..+++|+.|++++| .++.+| ..+..+++|+.|+
T Consensus 174 L~L~~N~-l~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~--~~~~~l~~L~~L~ 243 (317)
T 3o53_A 174 LNLQYNF-IYDVK-----GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIE--KALRFSQNLEHFD 243 (317)
T ss_dssp EECTTSC-CCEEE-----CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEEC--TTCCCCTTCCEEE
T ss_pred EECCCCc-Ccccc-----cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchh--hHhhcCCCCCEEE
Confidence 6666543 33321 1123566677777665 34456655666777777777774 566665 3346667777777
Q ss_pred ecCcchh-hHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCcc
Q 000945 939 IDGCRML-TEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMK 1003 (1212)
Q Consensus 939 i~~c~~l-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~ 1003 (1212)
+++|+-. ..++. ....+++|+.|++.+++.++......+. .+.+....-..|..+.
T Consensus 244 l~~N~~~~~~~~~-------~~~~~~~L~~l~l~~~~~l~~~~~~~~~--~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 244 LRGNGFHCGTLRD-------FFSKNQRVQTVAKQTVKKLTGQNEEECT--VPTLGHYGAYCCEDLP 300 (317)
T ss_dssp CTTCCCBHHHHHH-------HHHTCHHHHHHHHHHHHHHHSSSSCCCS--STTCEEETTEEEBCCT
T ss_pred ccCCCccCcCHHH-------HHhccccceEEECCCchhccCCchhccC--CCceecccceeeccCC
Confidence 7776633 22221 1234677778887777666665544332 1333333333455543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=176.51 Aligned_cols=187 Identities=21% Similarity=0.215 Sum_probs=141.0
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|++|++++|.+..+....+. .+++|++|++++| .++.+++.. ++++++|++|++++|. +..++..
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~------- 118 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYNY-LSNLSSS------- 118 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSSCCHH-------
T ss_pred cccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCCc-CCcCCHh-------
Confidence 36899999999988877664443 6899999999986 677766543 5889999999999986 6655321
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|++|++.++. +..++.......+++|+.|++++|..+..+++. .+ ..+++
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~--------------------~~l~~ 175 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK--DF--------------------AGLTF 175 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--TT--------------------TTCCE
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHH--Hc--------------------cCCCC
Confidence 23458999999999873 444444122346899999999998767666311 11 11688
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEe
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEI 840 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~ 840 (1212)
|++|++++|.+..+.+ .....+++|++|++++|.+..+|...+..+++|+.|+++.|.++..
T Consensus 176 L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 176 LEELEIDASDLQSYEP--KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp EEEEEEEETTCCEECT--TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CCEEECCCCCcCccCH--HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 9999999998888754 3445688999999999999999988888899999999997777654
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=3.6e-18 Score=203.19 Aligned_cols=163 Identities=18% Similarity=0.076 Sum_probs=74.6
Q ss_pred cccceeeeecccccccccccc---CcccccccceEeEeecCCccc-----cchHHHhhcCccceeEEEccceeEeccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQ---FPKHIFRNLKNLEVVNDESEN-----FRIGFLERFHNLEKLELRWSSYKEIFSNEE 845 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~-----~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~ 845 (1212)
+++|++|++++|.+....... .....+++|++|++++|.+.. ++.. +..+++|+.|+++.|.+...... .
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~-~ 303 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGAR-L 303 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHH-H
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHH-H
Confidence 455566666555544321100 011124566666666665555 3332 55566677777764444321110 0
Q ss_pred hhhcc-ccccccceEeeCCCccchhhh-ccCCCCccccCcccEEEEecCCCcccc-cCCcc-----ccCCccEEeecccc
Q 000945 846 IVEHA-EMLTQVKSLKLWELSDLMYIW-KQDSKLDSITENLESLEVWWCENLINL-VPSSA-----SFKNLTTLELWYCQ 917 (1212)
Q Consensus 846 ~~~~~-~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~-----~l~~L~~L~l~~c~ 917 (1212)
+...+ ...++|++|++++|. +.... ...+..+..+++|++|++++|. ++.. +..+. ..++|+.|++++|
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 00110 112466666666654 21110 0012234455666666666653 2221 11111 1456666666665
Q ss_pred Ccc-----cccchhhhcccccccEEEecCcc
Q 000945 918 RLM-----NLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 918 ~l~-----~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
.++ .++ ..+..+++|++|++++|+
T Consensus 381 ~i~~~~~~~l~--~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 DVSDSSCSSLA--ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCCHHHHHHHH--HHHHHCCCCCEEECCSSS
T ss_pred CCChhhHHHHH--HHHHhCCCccEEECCCCC
Confidence 344 222 333445666666666664
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=2.6e-16 Score=175.34 Aligned_cols=253 Identities=15% Similarity=0.088 Sum_probs=132.2
Q ss_pred cccceeeccccccce--ecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccc-eeeccccccc
Q 000945 618 PNLETLELCAISTEK--IWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLE-SIVGKESGEE 694 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~--~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~-~i~~~~~~~~ 694 (1212)
.+++.|+++++.+.. .....+ ..+++|++|++++++.+....|.. ++++++|++|++++|. +. .++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~------ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPD------ 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCG------
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcCCH------
Confidence 567888888886653 222222 257888888888655555433333 5778888888888776 33 3221
Q ss_pred ccccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeec
Q 000945 695 ATTTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVT 774 (1212)
Q Consensus 695 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 774 (1212)
....+++|++|+++++.--..++.. ...+
T Consensus 120 --~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l----------------------------------------------- 148 (313)
T 1ogq_A 120 --FLSQIKTLVTLDFSYNALSGTLPPS--ISSL----------------------------------------------- 148 (313)
T ss_dssp --GGGGCTTCCEEECCSSEEESCCCGG--GGGC-----------------------------------------------
T ss_pred --HHhCCCCCCEEeCCCCccCCcCChH--HhcC-----------------------------------------------
Confidence 2233556666665554321111111 1124
Q ss_pred ccceeeeeccccccccccccCcccccc-cceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFR-NLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
++|++|++++|.+.+..+ .....++ +|+.|++++|.+....+..+..++ |+.|+++.|.++..++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-----~~~~~l 220 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-----VLFGSD 220 (313)
T ss_dssp TTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-----GGCCTT
T ss_pred CCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-----HHHhcC
Confidence 445555555554442221 1122333 555555555544422222244454 6666666555554332 223335
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|+++++.--..+ ..+..+++|++|++++|...+.+|..+..+++|+.|++++|+--..+|.. ..+++
T Consensus 221 ~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~ 292 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQR 292 (313)
T ss_dssp SCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS---TTGGG
T ss_pred CCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC---ccccc
Confidence 66666666654321111 12445666777777766655566666666777777777765322244421 55666
Q ss_pred ccEEEecCcchhhH
Q 000945 934 LTKLRIDGCRMLTE 947 (1212)
Q Consensus 934 L~~L~i~~c~~l~~ 947 (1212)
|+.|++++++.+..
T Consensus 293 L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 293 FDVSAYANNKCLCG 306 (313)
T ss_dssp SCGGGTCSSSEEES
T ss_pred cChHHhcCCCCccC
Confidence 77777776665443
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=1.2e-15 Score=170.10 Aligned_cols=254 Identities=15% Similarity=0.063 Sum_probs=177.2
Q ss_pred cCccEEEEecCCCcc--ccCchhhhhccCCCcEEEeccccccceeecccccccccccccCCccceeecccCCccceeccC
Q 000945 644 QNLTRLIVHGCEKLK--YLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVFPKVTFLKLWNLSELKTFYPG 721 (1212)
Q Consensus 644 ~~L~~L~L~~c~~l~--~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 721 (1212)
.+++.|+++++.--. .+|+. ++++++|++|+++++..+...... ...
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~-------~l~---------------------- 98 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPP-------AIA---------------------- 98 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG--GGGCTTCSEEEEEEETTEESCCCG-------GGG----------------------
T ss_pred ceEEEEECCCCCccCCcccChh--HhCCCCCCeeeCCCCCcccccCCh-------hHh----------------------
Confidence 579999999874433 45553 688999999999864434322110 111
Q ss_pred CCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeeeeccccccccccccCcccccc
Q 000945 722 THTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELKLSGKDIAMICQSQFPKHIFR 801 (1212)
Q Consensus 722 ~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~~~~~~ 801 (1212)
.+++|++|++++|.--..+|.. + ..+++|++|++++|.+.+..+ .....++
T Consensus 99 ----~l~~L~~L~Ls~n~l~~~~p~~---~--------------------~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~ 149 (313)
T 1ogq_A 99 ----KLTQLHYLYITHTNVSGAIPDF---L--------------------SQIKTLVTLDFSYNALSGTLP--PSISSLP 149 (313)
T ss_dssp ----GCTTCSEEEEEEECCEEECCGG---G--------------------GGCTTCCEEECCSSEEESCCC--GGGGGCT
T ss_pred ----cCCCCCEEECcCCeeCCcCCHH---H--------------------hCCCCCCEEeCCCCccCCcCC--hHHhcCC
Confidence 3556666666665322233211 1 116789999999988886543 3346789
Q ss_pred cceEeEeecCCcc-ccchHHHhhcC-ccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCcc
Q 000945 802 NLKNLEVVNDESE-NFRIGFLERFH-NLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS 879 (1212)
Q Consensus 802 ~L~~L~l~~~~~~-~~p~~~l~~l~-~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 879 (1212)
+|++|++++|.+. .+|.. +..++ +|+.|+++.|.++...+. .+..++ |+.|+++++. +. ...+..+.
T Consensus 150 ~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~-----~~~~l~-L~~L~Ls~N~-l~---~~~~~~~~ 218 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPP-----TFANLN-LAFVDLSRNM-LE---GDASVLFG 218 (313)
T ss_dssp TCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCG-----GGGGCC-CSEEECCSSE-EE---ECCGGGCC
T ss_pred CCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCCh-----HHhCCc-ccEEECcCCc-cc---CcCCHHHh
Confidence 9999999998887 66665 77777 999999998888755442 233355 9999999975 22 22356678
Q ss_pred ccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcc-cccchhhhcccccccEEEecCcchhhHhhccCcccccc
Q 000945 880 ITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLM-NLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAED 958 (1212)
Q Consensus 880 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 958 (1212)
.+++|+.|++++|.....+|. +..+++|++|++++| .++ .+| ..+..+++|+.|++++|..-..+|.
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~-------- 286 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQ-------- 286 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCC--GGGGGCTTCCEEECCSSEEEEECCC--------
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCC--hHHhcCcCCCEEECcCCcccccCCC--------
Confidence 899999999999865544444 678899999999997 455 555 5568889999999999985445552
Q ss_pred ceeccchhhhhhccCCCccccc
Q 000945 959 EIVFSKLKWVSLERLENLTSFC 980 (1212)
Q Consensus 959 ~~~l~~L~~L~l~~~~~L~~l~ 980 (1212)
...+++|+.|++.+++.+-..|
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTT
T ss_pred CccccccChHHhcCCCCccCCC
Confidence 2457889999999888665544
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=8.3e-18 Score=200.08 Aligned_cols=167 Identities=15% Similarity=-0.011 Sum_probs=90.1
Q ss_pred cccceeeeeccccccccccc--cCcccccccceEeEeecCCccccchHHHhh-----cCccceeEEEccceeEeccccch
Q 000945 774 TSKLEELKLSGKDIAMICQS--QFPKHIFRNLKNLEVVNDESENFRIGFLER-----FHNLEKLELRWSSYKEIFSNEEI 846 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~-----l~~L~~L~l~c~~l~~~~~~~~~ 846 (1212)
+++|++|++++|.+...... ......+++|++|++++|.+.......+.. .++|+.|+++.+.++... ...+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC-CSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-HHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH-HHHH
Confidence 45666666666655542100 011223566777777776655433332322 257777777744444321 0011
Q ss_pred hhccccccccceEeeCCCccchhhhcc-CCCCcc-ccCcccEEEEecCCCcc----cccCCccccCCccEEeeccccCcc
Q 000945 847 VEHAEMLTQVKSLKLWELSDLMYIWKQ-DSKLDS-ITENLESLEVWWCENLI----NLVPSSASFKNLTTLELWYCQRLM 920 (1212)
Q Consensus 847 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~~l~ 920 (1212)
...+..+++|++|++++|. +...... ....+. ..++|++|++++|..-. .+|..+..+++|++|++++| .++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred HHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence 1233345777888877763 3322100 001111 25688889998885443 67776777899999999986 455
Q ss_pred cccchhh----hcccccccEEEecCcc
Q 000945 921 NLVTSST----AKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 921 ~l~~~~~----~~~l~~L~~L~i~~c~ 943 (1212)
......+ ......|+.|.+.++.
T Consensus 412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 412 DAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHHHHhccCCcchhheeecccc
Confidence 4322222 2333468888877765
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=7.7e-16 Score=172.16 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=153.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|++|++++|.+.++.. .++|++|++++|.+..++.. .+++|+.|+++.|.++.+++. .+..+
T Consensus 79 l~~L~~L~Ls~n~l~~l~~-------~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~-----~~~~l 143 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV-------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-----DEGCR 143 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE-------CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB-----CTGGG
T ss_pred cCCCCEEECcCCccccccC-------CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch-----hhhcc
Confidence 6789999999998887752 47999999999999988854 478999999998888776542 23457
Q ss_pred cccceEeeCCCccchhhhccCCCCc-cccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLD-SITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|+++++. +..+. +..+ ..+++|++|++++|. ++.+|.. ..+++|+.|++++| .++.+|. .+..++
T Consensus 144 ~~L~~L~Ls~N~-l~~~~---~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~ 214 (317)
T 3o53_A 144 SRVQYLDLKLNE-IDTVN---FAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGP--EFQSAA 214 (317)
T ss_dssp SSEEEEECTTSC-CCEEE---GGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECG--GGGGGT
T ss_pred CCCCEEECCCCC-CCccc---HHHHhhccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-cCCcchh--hhcccC
Confidence 999999999974 33331 2333 468999999999975 5666543 45899999999996 7888874 367889
Q ss_pred cccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCc-ccccCCCceeecCCccEEEeccCCCccccCcCCc
Q 000945 933 CLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENL-TSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVL 1010 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L-~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~ 1010 (1212)
+|+.|++++|. +..+|. ....+++|+.|++++++-. ..++.... .++.|+.|++.+|+.++..+....
T Consensus 215 ~L~~L~L~~N~-l~~l~~-------~~~~l~~L~~L~l~~N~~~~~~~~~~~~--~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 215 GVTWISLRNNK-LVLIEK-------ALRFSQNLEHFDLRGNGFHCGTLRDFFS--KNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp TCSEEECTTSC-CCEECT-------TCCCCTTCCEEECTTCCCBHHHHHHHHH--TCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred cccEEECcCCc-ccchhh-------HhhcCCCCCEEEccCCCccCcCHHHHHh--ccccceEEECCCchhccCCchhcc
Confidence 99999999996 666663 2345789999999998744 24443333 357899999998877766544433
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=6.9e-16 Score=182.83 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=29.7
Q ss_pred cCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 881 TENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 881 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
+++|+.|++++| .++.+|+.+..+++|+.|++++| .++.+| ..+..+++|+.|++++|+
T Consensus 190 l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 190 FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIE--KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEEC--TTCCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccc--hhhccCCCCCEEEcCCCC
Confidence 445555555543 23344444555555555555553 444444 223445555555555554
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=169.68 Aligned_cols=277 Identities=14% Similarity=0.133 Sum_probs=182.1
Q ss_pred cccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccc
Q 000945 618 PNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATT 697 (1212)
Q Consensus 618 ~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 697 (1212)
+.....+.+++.++.++.. ..++|++|+++++ .++.+++.. ++++++|++|++++|. +..+... .
T Consensus 31 ~~~~~c~~~~~~l~~iP~~-----~~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~-------~ 95 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSG-----LTEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSNG-INTIEED-------S 95 (353)
T ss_dssp CTTSEEECCSTTCSSCCTT-----CCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC-CCEECTT-------T
T ss_pred CCCeEeeCCCCCccccccc-----ccccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCCc-cCccCHh-------h
Confidence 4444567777777666543 3578999999986 577776633 5889999999999986 6666432 2
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
...+++|++|+++++. +..++... ...+++|++|++++| .+..+|.. ..+ ..+++|
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~-~~~--------------------~~l~~L 151 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNY-LSNLSSSW-FKPLSSLTFLNLLGN-PYKTLGET-SLF--------------------SHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCHHH-HTTCTTCSEEECTTC-CCSSSCSS-CSC--------------------TTCTTC
T ss_pred cCCCCCCCEEECCCCc-CCcCCHhH-hCCCccCCEEECCCC-CCcccCch-hhh--------------------ccCCCC
Confidence 3457889999998763 33333211 125788889988886 45555310 001 126788
Q ss_pred eeeeecccc-ccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 778 EELKLSGKD-IAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 778 ~~L~l~~~~-~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
+.|++++|+ +..+.+ .....+++|++|++++|.+..+++..+..+++|+.|+++.|.++.++. ..+..+++|
T Consensus 152 ~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L 224 (353)
T 2z80_A 152 QILRVGNMDTFTKIQR--KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-----IFVDVTSSV 224 (353)
T ss_dssp CEEEEEESSSCCEECT--TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-----HHHHHTTTE
T ss_pred cEEECCCCccccccCH--HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh-----hhhhhcccc
Confidence 888888873 555543 234567888888888888887766668888888888888666654432 112346888
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCc----ccccCCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENL----INLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
+.|+++++. +..++..........+.++.++++++..- ..+|..+..+++|+.|++++| .++.+|. ..+..++
T Consensus 225 ~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~ 301 (353)
T 2z80_A 225 ECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLT 301 (353)
T ss_dssp EEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCC
Confidence 888888864 33332222222334566777888776432 246666677888888888885 6777763 3346778
Q ss_pred cccEEEecCcc
Q 000945 933 CLTKLRIDGCR 943 (1212)
Q Consensus 933 ~L~~L~i~~c~ 943 (1212)
+|+.|++++|+
T Consensus 302 ~L~~L~L~~N~ 312 (353)
T 2z80_A 302 SLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 88888888886
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=172.81 Aligned_cols=227 Identities=18% Similarity=0.213 Sum_probs=176.3
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
.++++.|+|++|.+..+.+ ..+..+++|++|+|++|.+..++...|.++++|+.|+|+.|.++.+++ ..+..+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 135 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-----GAFVYL 135 (440)
T ss_dssp CTTCSEEECCSCCCCEECT--TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-----TTSCSC
T ss_pred CCCCcEEEccCCcCCeeCH--HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-----hHhhcc
Confidence 4688999999999888865 344578899999999999999988889999999999999778877654 234457
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC-CccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP-SSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|++|+++++. +..++ +..+..+++|++|++++|+.++.+++ .+..+++|+.|++++| .++.+| .+..++
T Consensus 136 ~~L~~L~L~~N~-i~~~~---~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~ 207 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIP---SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLI 207 (440)
T ss_dssp SSCCEEECCSCC-CCEEC---TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCS
T ss_pred ccCceeeCCCCc-ccccC---HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCc
Confidence 899999998865 44442 44677889999999999999988876 3677899999999996 788776 357788
Q ss_pred cccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCC-cC
Q 000945 933 CLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRV-LS 1011 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~-~~ 1011 (1212)
+|+.|++++|. +..++. .....+++|+.|++.++ .++.++..... .+++|++|+++++ .+..+|... ..
T Consensus 208 ~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRP------GSFQGLMHLQKLWMIQS-QIQVIERNAFD-NLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp SCCEEECTTSC-CCEECT------TTTTTCTTCCEEECTTC-CCCEECTTSST-TCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred ccCEEECCCCc-cCccCh------hhhccCccCCEEECCCC-ceeEEChhhhc-CCCCCCEEECCCC-CCCccChhHhcc
Confidence 89999999986 554432 12345788999999988 46777654432 4689999999997 566777554 67
Q ss_pred CCccceEEeccCcc
Q 000945 1012 TPRLREVRQNWGLY 1025 (1212)
Q Consensus 1012 ~~~L~~l~~~~~~~ 1025 (1212)
+++|+.+++++|..
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 89999999998764
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=1.8e-14 Score=170.07 Aligned_cols=226 Identities=19% Similarity=0.133 Sum_probs=149.3
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++|+.|+|++|.+..+....+. .+++|+.|+|++| .+..+++.. +..+++|++|+|++|. +..++..
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~------- 141 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDNW-LTVIPSG------- 141 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CSBCCTT-------
T ss_pred CCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCCc-CCccChh-------
Confidence 37899999999988777655554 6899999999986 677766543 5789999999999986 6666432
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|++|+++++. +..++... ...+++|+.|++++|..+..++... + ..+++
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~--~--------------------~~l~~ 197 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYA-FNRVPSLMRLDLGELKKLEYISEGA--F--------------------EGLFN 197 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTT-TTTCTTCCEEECCCCTTCCEECTTT--T--------------------TTCTT
T ss_pred hhcccCCCCEEECCCCC-cceeCHhH-HhcCCcccEEeCCCCCCccccChhh--c--------------------cCCCC
Confidence 23347889999998875 45554332 2367889999999888887774210 1 11677
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|++|++++|.+..++ ....+++|+.|++++|.+..+++..+.++++|+.|+++.|.++.+.+
T Consensus 198 L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 259 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-------------- 259 (452)
T ss_dssp CCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--------------
T ss_pred CCEEECCCCcccccc----cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--------------
Confidence 888888887777663 23456677777777777776666666666666666666555544332
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYC 916 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c 916 (1212)
..+..+++|+.|++++| .++.+|+. +..+++|+.|+++++
T Consensus 260 -------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 260 -------------------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp -------------------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred -------------------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 23344555555555554 33344432 345566666666664
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=7.5e-15 Score=161.64 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=67.7
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|++|++++|.+..+.+ .....+++|++|++++|.+..++...+..+++|+.|+++.|.++.+++. .+..+
T Consensus 104 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-----AFRGL 176 (285)
T ss_dssp CTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred CcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-----HhcCc
Confidence 4556666666655555432 2233456666666666666666665566666677777665555554421 12234
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC-CccccCCccEEeeccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP-SSASFKNLTTLELWYC 916 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 916 (1212)
++|+.|+++++. +..+ .+..+..+++|+.|++++|. ++.+|+ .+..+++|+.|+++++
T Consensus 177 ~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 177 HSLDRLLLHQNR-VAHV---HPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTCCEEECCSSC-CCEE---CTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred cccCEEECCCCc-cccc---CHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence 555555555543 1111 23344455555555555542 223332 2344555555555554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=168.68 Aligned_cols=226 Identities=18% Similarity=0.169 Sum_probs=142.1
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
+++++.|+|++|.+..+....+. .+++|+.|+|++| .+..+++.. +..+++|++|+|++|. +..++..
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n~-l~~~~~~------- 130 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDNR-LTTIPNG------- 130 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSSC-CSSCCTT-------
T ss_pred CCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCCc-CCeeCHh-------
Confidence 37889999999988777655554 6889999999986 577766543 5789999999999885 6666432
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
.+..+++|++|++.++. +..++... ...+++|+.|++++|..+..++.. .+ ..+++
T Consensus 131 ~~~~l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~--~~--------------------~~l~~ 186 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNP-IESIPSYA-FNRIPSLRRLDLGELKRLSYISEG--AF--------------------EGLSN 186 (440)
T ss_dssp TSCSCSSCCEEECCSCC-CCEECTTT-TTTCTTCCEEECCCCTTCCEECTT--TT--------------------TTCSS
T ss_pred HhhccccCceeeCCCCc-ccccCHHH-hhhCcccCEeCCCCCCCcceeCcc--hh--------------------hcccc
Confidence 23447888888888764 44444322 235788888888888777666311 01 11567
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
|++|++++|.+..++ ....+++|+.|++++|.+..+++..+..+++|+.|+++.|.++.+.
T Consensus 187 L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 247 (440)
T 3zyj_A 187 LRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE--------------- 247 (440)
T ss_dssp CCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC---------------
T ss_pred cCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC---------------
Confidence 777777777666553 2344566666666666666665555566666666666544444433
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYC 916 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c 916 (1212)
+..+..+++|+.|++++| .++.+|+. +..+++|+.|+++++
T Consensus 248 ------------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 248 ------------------RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ------------------TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ------------------hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 233444555555555554 33344332 345566666666664
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=5.4e-15 Score=175.15 Aligned_cols=218 Identities=14% Similarity=0.099 Sum_probs=178.3
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+.+ ..+..+++|++|+|++|.+...++ +..+++|+.|+++.|.++.+++ .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----------~ 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----------G 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG--GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----------C
T ss_pred CCCccEEEeeCCcCCCCCH--HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----------C
Confidence 6799999999999998765 345678999999999999887765 8899999999999888988764 5
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..++. ..+++|+.|++++|......|..++.+++|+.|++++| .++.+++..+...+++
T Consensus 99 ~~L~~L~L~~N~-l~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 99 PSIETLHAANNN-ISRVSC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDT 170 (487)
T ss_dssp TTCCEEECCSSC-CCCEEE------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTT
T ss_pred CCcCEEECcCCc-CCCCCc------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCc
Confidence 899999999975 444321 24689999999998766656767888999999999996 6777665566668899
Q ss_pred ccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCCcCCC
Q 000945 934 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLSTP 1013 (1212)
Q Consensus 934 L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~~ 1013 (1212)
|+.|++++|. +..++. ...+++|+.|+++++ .+..+|.... .+++|+.|++++|. +..+|.++..++
T Consensus 171 L~~L~Ls~N~-l~~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~~~~--~l~~L~~L~Ls~N~-l~~lp~~l~~l~ 237 (487)
T 3oja_A 171 LEHLNLQYNF-IYDVKG--------QVVFAKLKTLDLSSN-KLAFMGPEFQ--SAAGVTWISLRNNK-LVLIEKALRFSQ 237 (487)
T ss_dssp CCEEECTTSC-CCEEEC--------CCCCTTCCEEECCSS-CCCEECGGGG--GGTTCSEEECTTSC-CCEECTTCCCCT
T ss_pred ccEEecCCCc-cccccc--------cccCCCCCEEECCCC-CCCCCCHhHc--CCCCccEEEecCCc-CcccchhhccCC
Confidence 9999999998 555542 235899999999998 4788877644 46999999999975 678999999999
Q ss_pred ccceEEeccCccc
Q 000945 1014 RLREVRQNWGLYK 1026 (1212)
Q Consensus 1014 ~L~~l~~~~~~~~ 1026 (1212)
+|+.+++++|...
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 9999999987643
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=8.4e-15 Score=156.42 Aligned_cols=201 Identities=15% Similarity=0.110 Sum_probs=141.6
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCC-ccccchHHHhhcCccceeEEE-ccceeEeccccchhhccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDE-SENFRIGFLERFHNLEKLELR-WSSYKEIFSNEEIVEHAE 851 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~l~~l~~L~~L~l~-c~~l~~~~~~~~~~~~~~ 851 (1212)
.++|+.|++++|.++.+.+ .....+++|++|++++|. +..++...+..+++|+.|+++ ||.++.+++ ..+.
T Consensus 30 ~~~l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~f~ 102 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-----DALK 102 (239)
T ss_dssp CTTCCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-----TSEE
T ss_pred CCcccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-----HHhC
Confidence 4688999999999988864 234568899999999986 888888778889999999999 699888764 2344
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCccc---EEEEecCCCcccccCC-ccccCCcc-EEeeccccCcccccchh
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE---SLEVWWCENLINLVPS-SASFKNLT-TLELWYCQRLMNLVTSS 926 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~---~L~l~~c~~l~~lp~~-~~~l~~L~-~L~l~~c~~l~~l~~~~ 926 (1212)
.+++|+.|+++++. +..+ |. +..+++|+ +|++++|+.++.+|+. +..+++|+ .|+++++ .++.+|...
T Consensus 103 ~l~~L~~L~l~~n~-l~~l----p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~ 175 (239)
T 2xwt_C 103 ELPLLKFLGIFNTG-LKMF----PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYA 175 (239)
T ss_dssp CCTTCCEEEEEEEC-CCSC----CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTT
T ss_pred CCCCCCEEeCCCCC-Cccc----cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhh
Confidence 57888999888764 4444 22 55666666 8888888777777764 56788888 8888875 677776432
Q ss_pred hhcccccccEEEecCcchhhHhhccCccccccceec-cchhhhhhccCCCcccccCCCceeecCCccEEEeccCCC
Q 000945 927 TAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVF-SKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPK 1001 (1212)
Q Consensus 927 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~ 1001 (1212)
+ .. ++|+.|++++|..+..++.. ....+ ++|+.|+++++ .++.+|.. .+++|+.|++.+++.
T Consensus 176 ~-~~-~~L~~L~L~~n~~l~~i~~~------~~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 F-NG-TKLDAVYLNKNKYLTVIDKD------AFGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp T-TT-CEEEEEECTTCTTCCEECTT------TTTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC--
T ss_pred c-CC-CCCCEEEcCCCCCcccCCHH------HhhccccCCcEEECCCC-ccccCChh----HhccCceeeccCccC
Confidence 2 22 67888888888656655421 12234 67777777765 46666654 246777777776654
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.1e-14 Score=171.75 Aligned_cols=227 Identities=20% Similarity=0.191 Sum_probs=182.4
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
.++|+.|++++|.+..+.+ ..+..+++|+.|++++|.+..+++..+.++++|+.|+|+.|.++.+++ ..+..+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 146 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQA--DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-----GAFEYL 146 (452)
T ss_dssp CTTCSEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-----TTSSSC
T ss_pred CCCccEEECcCCcCceECH--HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-----hhhccc
Confidence 4689999999999998865 345678999999999999999998889999999999999888887664 234558
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|++|+++++. +..++ +..+..+++|+.|++++|+.++.++.. +..+++|+.|++++| +++.+| .+..++
T Consensus 147 ~~L~~L~L~~N~-l~~~~---~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIP---SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP---NLTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEEC---TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC---CCTTCT
T ss_pred CCCCEEECCCCC-cceeC---HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc---cccccc
Confidence 999999999875 45442 456788999999999999999999874 678999999999996 788875 357789
Q ss_pred cccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCC-cC
Q 000945 933 CLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRV-LS 1011 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~-~~ 1011 (1212)
+|+.|++++|. +..++. .....+++|+.|+++++. +..++..... .+++|+.|+++++ .+..+|... ..
T Consensus 219 ~L~~L~Ls~N~-l~~~~~------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~ 288 (452)
T 3zyi_A 219 GLEELEMSGNH-FPEIRP------GSFHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHN-NLSSLPHDLFTP 288 (452)
T ss_dssp TCCEEECTTSC-CSEECG------GGGTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred cccEEECcCCc-CcccCc------ccccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCC-cCCccChHHhcc
Confidence 99999999987 444431 124457899999999984 6666544332 4689999999998 567777654 67
Q ss_pred CCccceEEeccCcc
Q 000945 1012 TPRLREVRQNWGLY 1025 (1212)
Q Consensus 1012 ~~~L~~l~~~~~~~ 1025 (1212)
+++|+.+++++|..
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 89999999998753
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=1.9e-14 Score=160.35 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=62.0
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcC
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 347 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l 347 (1212)
+.++.+++.+..+|..+. .+|++|++++| .+..+|.+++.++.+|++|++++|.+..... .+..+..+
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~~~~ 77 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---------CSQSDFGT 77 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---------EEHHHHSC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccC---------cccccccc
Confidence 357788888988987654 58999999999 7999998878999999999999998752211 23455567
Q ss_pred CCCCcceeeecccc
Q 000945 348 SHLTTLEIQICDAM 361 (1212)
Q Consensus 348 ~~L~~L~l~~~~~~ 361 (1212)
.+|++|++++|.+.
T Consensus 78 ~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 78 TSLKYLDLSFNGVI 91 (306)
T ss_dssp SCCCEEECCSCSEE
T ss_pred cccCEEECCCCccc
Confidence 77777777766543
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=4.7e-14 Score=157.14 Aligned_cols=228 Identities=15% Similarity=0.083 Sum_probs=174.6
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCcccc---chHHHhhcCccceeEEEccceeEeccccchhhcc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENF---RIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHA 850 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~---p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~ 850 (1212)
+++|+.|++++|.+..++. .....+++|++|++++|.+..+ +.. +..+++|+.|+++.|.+..++. .+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~------~~ 97 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSS------NF 97 (306)
T ss_dssp CTTCCEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEE------EE
T ss_pred CCCCCEEECCCCccCccCH--hHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChh------hc
Confidence 5689999999999987764 2345789999999999888766 444 6679999999999878877653 23
Q ss_pred ccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCccc--ccchhhh
Q 000945 851 EMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMN--LVTSSTA 928 (1212)
Q Consensus 851 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~ 928 (1212)
..+++|++|+++++. +..++. ...+..+++|++|++++|......|..+..+++|++|++++| .++. +| ..+
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~ 171 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLP--DIF 171 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTT--TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEEC--SCC
T ss_pred CCCCCCCEEECCCCc-cccccc--chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccch--hHH
Confidence 458999999999864 443321 246778999999999998766666666788999999999997 4543 33 556
Q ss_pred cccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcC
Q 000945 929 KSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHR 1008 (1212)
Q Consensus 929 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~ 1008 (1212)
..+++|+.|++++|. +..++. .....+++|+.|+++++. +..++..... .+++|++|++++|+-....|..
T Consensus 172 ~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 172 TELRNLTFLDLSQCQ-LEQLSP------TAFNSLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp TTCTTCCEEECTTSC-CCEECT------TTTTTCTTCCEEECTTSC-CSBCCSGGGT-TCTTCCEEECTTSCCCBCSSSS
T ss_pred hhCcCCCEEECCCCC-cCCcCH------HHhcCCCCCCEEECCCCc-cCccChhhcc-CcccCCEeECCCCCCcccCHHH
Confidence 788999999999997 444431 123457899999999984 6666543222 3689999999999776667777
Q ss_pred CcCCC-ccceEEeccCcc
Q 000945 1009 VLSTP-RLREVRQNWGLY 1025 (1212)
Q Consensus 1009 ~~~~~-~L~~l~~~~~~~ 1025 (1212)
+..++ +|+.+++++|..
T Consensus 243 ~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCCCTTCCEEECTTCCE
T ss_pred HHhhhccCCEEEccCCCe
Confidence 77775 999999998764
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=8.3e-14 Score=148.67 Aligned_cols=186 Identities=19% Similarity=0.168 Sum_probs=108.4
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
.++|+.|++++|.+..+....+. .+++|++|++++|..++.+++.. ++.+++|++|++++|..++.++..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~------- 99 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPD------- 99 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTT-------
T ss_pred CCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHH-------
Confidence 35788888888877777665543 57888888888876577776543 477888888888886667777432
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCcc---EEEEecCCCcccccccccchhhccCCCCCCccccceeeeeee
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLK---KLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKV 773 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~---~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (1212)
....+++|++|++.++. +..++. ...+++|+ .|++++++.+..+|+.. +. .
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~--~~--------------------~ 153 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNA--FQ--------------------G 153 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTT--TT--------------------T
T ss_pred HhCCCCCCCEEeCCCCC-Cccccc---cccccccccccEEECCCCcchhhcCccc--cc--------------------c
Confidence 22346677777776653 333332 12344454 66666665555553110 10 1
Q ss_pred cccce-eeeeccccccccccccCcccccccceEeEeecC-CccccchHHHhhc-CccceeEEEccceeEec
Q 000945 774 TSKLE-ELKLSGKDIAMICQSQFPKHIFRNLKNLEVVND-ESENFRIGFLERF-HNLEKLELRWSSYKEIF 841 (1212)
Q Consensus 774 l~~L~-~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~l~~l-~~L~~L~l~c~~l~~~~ 841 (1212)
+++|+ .|++++|.+..++...+ . .++|+.|++++| .+..+|...+..+ ++|+.|+++.|.++.++
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~--~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAF--N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTT--T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred hhcceeEEEcCCCCCcccCHhhc--C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 45566 66666665554432111 1 145556666555 3555555555555 55555555555554443
No 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.51 E-value=7.2e-15 Score=177.41 Aligned_cols=115 Identities=19% Similarity=0.065 Sum_probs=91.8
Q ss_pred ccchHHHHHHHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE-EEEEEecCCCCHHHHHHHHHHHhcCc
Q 000945 151 FESRKSILNDALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE-VVFVEVSQTPDVKRIQGDIADQLGLY 228 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~-~~wv~vs~~~~~~~l~~~il~~l~~~ 228 (1212)
.+||+.++++|.++|.+ ++++||+||||||+||||||+.+|++.+++.+|+. ++|++|++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999999874 56899999999999999999999999888899997 99999999999989888888754321
Q ss_pred ---ccC--C-------ChhHHHHHHHHHHH--cCCcEE-EecCccccccccc
Q 000945 229 ---ICE--G-------SESERAMVLCGLLK--KGKKIL-VLDNIWTSLDLDK 265 (1212)
Q Consensus 229 ---~~~--~-------~~~~~~~~l~~~L~--~~kr~L-VLDDVw~~~~~~~ 265 (1212)
... . +.......+++.|+ .+||+| ||||||+.++|+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~ 261 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHh
Confidence 111 0 12234566676662 259999 9999999887754
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=6.4e-13 Score=150.61 Aligned_cols=243 Identities=18% Similarity=0.128 Sum_probs=154.6
Q ss_pred eeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeecccccccccccccC
Q 000945 622 TLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEATTTFVF 701 (1212)
Q Consensus 622 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 701 (1212)
+++-++++++.++.. -.+++++|+|+++ +++.+++.. +.++++|++|+|++|..++.++.
T Consensus 13 ~v~C~~~~Lt~iP~~-----l~~~l~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~~------------- 72 (350)
T 4ay9_X 13 VFLCQESKVTEIPSD-----LPRNAIELRFVLT-KLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEA------------- 72 (350)
T ss_dssp EEEEESTTCCSCCTT-----CCTTCSEEEEESC-CCSEECTTS-STTCTTCCEEEEECCTTCCEECT-------------
T ss_pred EEEecCCCCCccCcC-----cCCCCCEEEccCC-cCCCcCHHH-HcCCCCCCEEECcCCCCCCccCh-------------
Confidence 344444455554432 1356777777763 566665532 36677777777777764444422
Q ss_pred CccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccceeee
Q 000945 702 PKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKLEELK 781 (1212)
Q Consensus 702 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~ 781 (1212)
+. ...+++|.++.+.++.++..+++.. | ..+++|++|+
T Consensus 73 -------------------~~-f~~L~~l~~~l~~~~N~l~~l~~~~--f--------------------~~l~~L~~L~ 110 (350)
T 4ay9_X 73 -------------------DV-FSNLPKLHEIRIEKANNLLYINPEA--F--------------------QNLPNLQYLL 110 (350)
T ss_dssp -------------------TS-BCSCTTCCEEEEEEETTCCEECTTS--B--------------------CCCTTCCEEE
T ss_pred -------------------hH-hhcchhhhhhhcccCCcccccCchh--h--------------------hhcccccccc
Confidence 11 1134445555555555555553110 0 1156677777
Q ss_pred eccccccccccccCcccccccceEeEeec-CCccccchHHHhhcC-ccceeEEEccceeEeccccchhhccccccccceE
Q 000945 782 LSGKDIAMICQSQFPKHIFRNLKNLEVVN-DESENFRIGFLERFH-NLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSL 859 (1212)
Q Consensus 782 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~-~~~~~~p~~~l~~l~-~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L 859 (1212)
+++|.+..+.+ .......++..|++.+ +.+..+|...+..+. .|+.|+++.|.++.+++.. ...++|+.|
T Consensus 111 l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~------f~~~~L~~l 182 (350)
T 4ay9_X 111 ISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA------FNGTQLDEL 182 (350)
T ss_dssp EEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS------STTEEEEEE
T ss_pred ccccccccCCc--hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh------ccccchhHH
Confidence 77666666543 2222345566777766 677777766666654 5788888888888776432 125678889
Q ss_pred eeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEe
Q 000945 860 KLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRI 939 (1212)
Q Consensus 860 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 939 (1212)
.+.++..+..++. ..+..+++|+.|++++| .++++|+ ..+.+|+.|.+.+|++++.+|. +..+++|+.+++
T Consensus 183 ~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l 253 (350)
T 4ay9_X 183 NLSDNNNLEELPN---DVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASL 253 (350)
T ss_dssp ECTTCTTCCCCCT---TTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEEC
T ss_pred hhccCCcccCCCH---HHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCC---chhCcChhhCcC
Confidence 8888887887742 34678889999999986 6888887 4488899999999999999873 467888999988
Q ss_pred cCcc
Q 000945 940 DGCR 943 (1212)
Q Consensus 940 ~~c~ 943 (1212)
.+..
T Consensus 254 ~~~~ 257 (350)
T 4ay9_X 254 TYPS 257 (350)
T ss_dssp SCHH
T ss_pred CCCc
Confidence 7643
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=3.9e-13 Score=152.43 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=154.7
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeeccccccccc
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVGKESGEEAT 696 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 696 (1212)
++++++|+|++|.++.++...|. .+++|++|+|++|..++.+++. .+.++++|.++.+.++..+..++..
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~------- 98 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPE------- 98 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTT-------
T ss_pred CCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCch-------
Confidence 47899999999999988877665 6999999999998766666553 3578999998877777778888543
Q ss_pred ccccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeeccc
Q 000945 697 TTFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSK 776 (1212)
Q Consensus 697 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 776 (1212)
....+++|++|++.++. +..++.... .....+..+++.++.++..++... +. .....
T Consensus 99 ~f~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~--f~-------------------~~~~~ 155 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNS--FV-------------------GLSFE 155 (350)
T ss_dssp SBCCCTTCCEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTS--ST-------------------TSBSS
T ss_pred hhhhccccccccccccc-cccCCchhh-cccchhhhhhhccccccccccccc--hh-------------------hcchh
Confidence 23457899999998763 344333221 234567788888888887774211 10 01346
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeec-CCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVN-DESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQ 855 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~-~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~ 855 (1212)
++.|++++|.++.+.+.. ....+|+.|++++ |.++.+|...|..+++|+.|+++.|.++.+++.. +.+
T Consensus 156 l~~L~L~~N~i~~i~~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--------~~~ 224 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--------LEN 224 (350)
T ss_dssp CEEEECCSSCCCEECTTS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--------CTT
T ss_pred hhhhccccccccCCChhh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--------hcc
Confidence 788888888888776422 2345778888875 7788888777788888888888877777665422 556
Q ss_pred cceEeeCCCccchhhhccCCCCccccCcccEEEEec
Q 000945 856 VKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWW 891 (1212)
Q Consensus 856 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~ 891 (1212)
|+.|.+.++.+++.++ .+..+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLP-----TLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCC-----CTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCC-----CchhCcChhhCcCCC
Confidence 6666666666665552 244555666666543
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=2.7e-13 Score=149.19 Aligned_cols=222 Identities=15% Similarity=0.073 Sum_probs=144.8
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
..++.+++.+..++. ...++|++|+++++.+..++...+..+++|+.|+++.|.++.+.+ ..+..+++|+
T Consensus 14 ~~~~c~~~~l~~ip~-----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCT-----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCC
T ss_pred eEEEcCcCCcccCCc-----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-----hhcCCccCCC
Confidence 345555555555432 234577777777777777776667777788888887666666543 2234467788
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEE
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKL 937 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 937 (1212)
+|+++++..+..+ .+..+..+++|++|++++|......|..+..+++|++|++++| .++.++. ..+..+++|+.|
T Consensus 84 ~L~l~~n~~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L 158 (285)
T 1ozn_A 84 QLDLSDNAQLRSV---DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHL 158 (285)
T ss_dssp EEECCSCTTCCCC---CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEE
T ss_pred EEeCCCCCCcccc---CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCH-hHhccCCCccEE
Confidence 8888776545544 2445667778888888876544433455667788888888775 5666543 334667778888
Q ss_pred EecCcchhhHhhccCccccccceeccchhhhhhccCCCcccc-cCCCceeecCCccEEEeccCCCccccCc-CCcCCCcc
Q 000945 938 RIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSF-CSGNYTLKFPSLEDLFVIECPKMKIFSH-RVLSTPRL 1015 (1212)
Q Consensus 938 ~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l-~~~~~~~~~~sL~~L~i~~C~~l~~lp~-~~~~~~~L 1015 (1212)
++++|. +..++.. ....+++|+.|+++++. +..+ |.... .+++|+.|++++|. +..+|. .+..+++|
T Consensus 159 ~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 159 FLHGNR-ISSVPER------AFRGLHSLDRLLLHQNR-VAHVHPHAFR--DLGRLMTLYLFANN-LSALPTEALAPLRAL 227 (285)
T ss_dssp ECCSSC-CCEECTT------TTTTCTTCCEEECCSSC-CCEECTTTTT--TCTTCCEEECCSSC-CSCCCHHHHTTCTTC
T ss_pred ECCCCc-ccccCHH------HhcCccccCEEECCCCc-ccccCHhHcc--CcccccEeeCCCCc-CCcCCHHHcccCccc
Confidence 888775 4444421 12346778888888774 5555 33333 35899999999884 555654 46778999
Q ss_pred ceEEeccCcc
Q 000945 1016 REVRQNWGLY 1025 (1212)
Q Consensus 1016 ~~l~~~~~~~ 1025 (1212)
+.+++++|..
T Consensus 228 ~~L~l~~N~~ 237 (285)
T 1ozn_A 228 QYLRLNDNPW 237 (285)
T ss_dssp CEEECCSSCE
T ss_pred CEEeccCCCc
Confidence 9999988754
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.44 E-value=1.8e-13 Score=149.67 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=105.1
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
.++|+.|++++|.+..+.+ .....+++|++|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 99 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGL 99 (276)
T ss_dssp CTTCCEEECTTCCCCEECT--TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTC
T ss_pred CCCccEEECCCCcccccCH--hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-----hhhcCC
Confidence 4578889998888887764 234567888888888888888887778888888888888777776653 223446
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcc-cccCCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLI-NLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|++|+++++. +..+ .+..+..+++|++|++++|.... .+|..+..+++|+.|++++| .++.++.. .+..++
T Consensus 100 ~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 173 (276)
T 2z62_A 100 SSLQKLVAVETN-LASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-DLRVLH 173 (276)
T ss_dssp TTCCEEECTTSC-CCCS---TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-GGHHHH
T ss_pred ccccEEECCCCC-cccc---CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHH-Hhhhhh
Confidence 788888887754 3333 12346677788888888765433 35666677777888887775 45555432 223344
Q ss_pred ccc----EEEecCcc
Q 000945 933 CLT----KLRIDGCR 943 (1212)
Q Consensus 933 ~L~----~L~i~~c~ 943 (1212)
+|+ .|+++++.
T Consensus 174 ~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 174 QMPLLNLSLDLSLNP 188 (276)
T ss_dssp TCTTCCEEEECCSSC
T ss_pred hccccceeeecCCCc
Confidence 444 55555554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=2e-13 Score=148.75 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
++|++|++++|.+..+.+ .....+++|++|++++|.+..+|...+..+++|+.|+++.|.++.+++ ..+..++
T Consensus 109 ~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~ 181 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-----GVFDKLT 181 (272)
T ss_dssp TTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred cCCCEEECCCCcCCccCH--HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-----HHhcCCc
Confidence 444444444444443332 112334555555555555555555445555555555555444544332 1122345
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeecccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQ 917 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 917 (1212)
+|+.|++++|. +..+ .+..+..+++|+.|++++|+.. +.+++|+.|+++.+.
T Consensus 182 ~L~~L~L~~N~-l~~~---~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 182 QLKDLRLYQNQ-LKSV---PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TCCEEECCSSC-CSCC---CTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHH
T ss_pred cCCEEECCCCc-CCcc---CHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHh
Confidence 55555555543 2222 1233455666666666665433 234455666655543
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=1.3e-13 Score=153.61 Aligned_cols=157 Identities=17% Similarity=0.054 Sum_probs=83.5
Q ss_pred cccceeecccccccceeecccCCccccCCccEEEEecCCCCCcc--CchhhhccCCCccEEEEccCcCcchhhcccccCC
Q 000945 467 LLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNI--FSFSFVRGLPQLQTLNVINCKNMKEIFTVGREND 544 (1212)
Q Consensus 467 ~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 544 (1212)
++|++|+++++. +.. ..+..++.+++|++|+++++.-...+ +....+..+++|++|++++|. +..++.+.
T Consensus 149 ~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---- 220 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLN--FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVC---- 220 (312)
T ss_dssp TTCCEEEEESCS-CCC--CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHH----
T ss_pred CCCcEEEeeCCC-Ccc--chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHH----
Confidence 555555555542 221 12244566777777777775322221 111112667777888777765 44332200
Q ss_pred ccCCccCceecccccEEecccCCcccccccccccchhhHhhhcccccccCCcceecccccccccccccccccccccceee
Q 000945 545 VDCHEVDKIEFSQLHSLTLKFLPQLTSFYSQVKTSAASQTRLKELSTHTLPREVILEDECDTLMPFFNEKVVFPNLETLE 624 (1212)
Q Consensus 545 ~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~L~~L~ 624 (1212)
...+..+++|+.|+++++. +..... ......+++|+.|+
T Consensus 221 ----~~~~~~l~~L~~L~Ls~N~-l~~~~~------------------------------------~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 221 ----SALAAARVQLQGLDLSHNS-LRDAAG------------------------------------APSCDWPSQLNSLN 259 (312)
T ss_dssp ----HHHHHTTCCCSEEECTTSC-CCSSCC------------------------------------CSCCCCCTTCCEEE
T ss_pred ----HHHHhcCCCCCEEECCCCc-CCcccc------------------------------------hhhhhhcCCCCEEE
Confidence 0012245666666666542 111100 00112246777777
Q ss_pred ccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEecccc
Q 000945 625 LCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 681 (1212)
Q Consensus 625 l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 681 (1212)
+++|.++.++... +++|+.|+++++ .++.+|. +..+++|++|++++++
T Consensus 260 Ls~N~l~~ip~~~-----~~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 260 LSFTGLKQVPKGL-----PAKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTSCCSSCCSSC-----CSEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTCT
T ss_pred CCCCccChhhhhc-----cCCceEEECCCC-CCCCChh---HhhCCCCCEEeccCCC
Confidence 7777666443322 267788888775 5666544 5677778888877765
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=2e-12 Score=141.79 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=135.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++++.++++++.++.++. ...++++.|++++|.+..+++..+..+++|+.|+++.|.++.+++.. .+
T Consensus 9 l~~l~~l~~~~~~l~~ip~-----~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~l 76 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPP-----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-------TL 76 (290)
T ss_dssp STTCCEEECTTSCCSSCCS-----CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS-------CC
T ss_pred cCCccEEECCCCCCCcCCC-----CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC-------CC
Confidence 6788999999888887753 22468999999999999988888899999999999977887765432 36
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccccc-CCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV-PSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|+++++. +..+ |..+..+++|++|++++|. ++.+| ..+..+++|+.|++++| .++.+|. ..+..++
T Consensus 77 ~~L~~L~Ls~N~-l~~l----~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~ 148 (290)
T 1p9a_G 77 PVLGTLDLSHNQ-LQSL----PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPP-GLLTPTP 148 (290)
T ss_dssp TTCCEEECCSSC-CSSC----CCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCT
T ss_pred CcCCEEECCCCc-CCcC----chhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccCh-hhccccc
Confidence 788888888753 4444 4456677778888887753 44554 34566777777777774 5666643 3345566
Q ss_pred cccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCCcCC
Q 000945 933 CLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRVLST 1012 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~~ 1012 (1212)
+|+.|++++|. ++++|.+... .+++|++|+++++ .++.+|.+....
T Consensus 149 ~L~~L~L~~N~--------------------------------l~~l~~~~~~-~l~~L~~L~L~~N-~l~~ip~~~~~~ 194 (290)
T 1p9a_G 149 KLEKLSLANNN--------------------------------LTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGS 194 (290)
T ss_dssp TCCEEECTTSC--------------------------------CSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCEEECCCCc--------------------------------CCccCHHHhc-CcCCCCEEECCCC-cCCccChhhccc
Confidence 66666666654 3333333221 2467777777765 456777777777
Q ss_pred CccceEEeccCc
Q 000945 1013 PRLREVRQNWGL 1024 (1212)
Q Consensus 1013 ~~L~~l~~~~~~ 1024 (1212)
++|+.+++.+|.
T Consensus 195 ~~L~~l~L~~Np 206 (290)
T 1p9a_G 195 HLLPFAFLHGNP 206 (290)
T ss_dssp CCCSEEECCSCC
T ss_pred ccCCeEEeCCCC
Confidence 777777777665
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=1.4e-12 Score=142.54 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=157.0
Q ss_pred cccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCcc
Q 000945 800 FRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDS 879 (1212)
Q Consensus 800 ~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 879 (1212)
.++|++|++++|.+..++...+.++++|+.|+++.|.++.+++ ..+..+++|++|+++++. +..+ .+..+.
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~-l~~~---~~~~~~ 97 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNP-IQSL---ALGAFS 97 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCC-CCEE---CTTTTT
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-----HHccCCcCCCEEECCCCc-cCcc---Chhhhc
Confidence 3579999999999999998779999999999999778887764 234558999999999875 3333 245678
Q ss_pred ccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCccccccc
Q 000945 880 ITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDE 959 (1212)
Q Consensus 880 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 959 (1212)
.+++|++|++++|......+..+..+++|++|++++| .++.+.....+..+++|+.|++++|. +..++.. ..
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~------~~ 169 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT------DL 169 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG------GG
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHH------Hh
Confidence 8999999999997544433335788999999999996 67664323567889999999999987 4444321 12
Q ss_pred eeccchh----hhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcCC-cCCCccceEEeccCccc
Q 000945 960 IVFSKLK----WVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHRV-LSTPRLREVRQNWGLYK 1026 (1212)
Q Consensus 960 ~~l~~L~----~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~-~~~~~L~~l~~~~~~~~ 1026 (1212)
..+++|+ .|+++++ .+..++..... ..+|++|++++|. +..+|... ..+++|+.+++++|...
T Consensus 170 ~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~--~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLN-PMNFIQPGAFK--EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHHHTCTTCCEEEECCSS-CCCEECTTSSC--SCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhccccceeeecCCC-cccccCccccC--CCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence 2345555 6778777 47778766553 3689999999986 77888764 67999999999987653
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1e-12 Score=145.77 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=121.7
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|+++++.+..+. ....+++|++|++++|.+..++. +..+++|+.|+++.|.++.++. +..+
T Consensus 40 l~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA-------IAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-------GTTC
T ss_pred cCCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-------hcCC
Confidence 677888888888777653 24567888888888888887776 7778888888888666765432 3346
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..+ ..+..+++|++|++++|. ++.+++ +..+++|+.|++++| .++.++. +..+++
T Consensus 107 ~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDV-----TPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA-QVSDLTP---LANLSK 174 (308)
T ss_dssp TTCCEEECTTSC-CCCC-----GGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCEEECCCCC-CCCc-----hhhcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC-cCCCChh---hcCCCC
Confidence 788888888764 3333 236677788888888763 445544 567778888888875 5666642 567777
Q ss_pred ccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCC
Q 000945 934 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECP 1000 (1212)
Q Consensus 934 L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~ 1000 (1212)
|+.|++++|. +..++. ...+++|+.|++++|. +..++. .. .+++|+.|++++|+
T Consensus 175 L~~L~l~~n~-l~~~~~--------l~~l~~L~~L~L~~N~-l~~~~~-l~--~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 175 LTTLKADDNK-ISDISP--------LASLPNLIEVHLKNNQ-ISDVSP-LA--NTSNLFIVTLTNQT 228 (308)
T ss_dssp CCEEECCSSC-CCCCGG--------GGGCTTCCEEECTTSC-CCBCGG-GT--TCTTCCEEEEEEEE
T ss_pred CCEEECCCCc-cCcChh--------hcCCCCCCEEEccCCc-cCcccc-cc--CCCCCCEEEccCCe
Confidence 8888887775 333331 2234555555555552 344432 11 23555555555543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.36 E-value=1.7e-12 Score=141.32 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=83.8
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+.+ ..+..+++|++|++++|.+..+|...+..+++|+.|+++.|.++.+++ ..+..+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l 108 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-----GVFDQL 108 (270)
T ss_dssp CTTCSEEECCSSCCSCCCT--TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred CCCCCEEECcCCCCCeeCH--HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-----hHcccc
Confidence 3466777777776666543 233456677777777776767766666667777777776555555432 122335
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|+++++. +..+ .+..+..+++|++|++++| .++.+|+. +..+++|+.|++++| .++.++. ..+..++
T Consensus 109 ~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 181 (270)
T 2o6q_A 109 VNLAELRLDRNQ-LKSL---PPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLT 181 (270)
T ss_dssp SSCCEEECCSSC-CCCC---CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCT
T ss_pred cCCCEEECCCCc-cCee---CHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeCh-hHhccCC
Confidence 566666666543 2222 1233455566666666654 23344433 345556666666553 4444432 1233445
Q ss_pred cccEEEecCc
Q 000945 933 CLTKLRIDGC 942 (1212)
Q Consensus 933 ~L~~L~i~~c 942 (1212)
+|+.|++++|
T Consensus 182 ~L~~L~L~~N 191 (270)
T 2o6q_A 182 ELKTLKLDNN 191 (270)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECCCC
Confidence 5555555544
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=7.3e-13 Score=147.51 Aligned_cols=203 Identities=17% Similarity=0.108 Sum_probs=108.8
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhc-----CccceeEEEccceeEeccccchhh
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERF-----HNLEKLELRWSSYKEIFSNEEIVE 848 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l-----~~L~~L~l~c~~l~~~~~~~~~~~ 848 (1212)
+++|++|++++|.+.+..+.......+++|++|++++|.+..+|.. +..+ ++|+.|+++.|.+..+++ .
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~-----~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSC-----E 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCT-----T
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchH-----H
Confidence 5678888888777775544322235677777777777777776533 5555 666666666555554432 1
Q ss_pred ccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc--ccCCc--cccCCccEEeeccccCcccccc
Q 000945 849 HAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN--LVPSS--ASFKNLTTLELWYCQRLMNLVT 924 (1212)
Q Consensus 849 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~--~~l~~L~~L~l~~c~~l~~l~~ 924 (1212)
.+..+++|+.|++++ |...+. +|+.+ ..+++|++|++++| .++.++.
T Consensus 168 ~~~~l~~L~~L~Ls~----------------------------N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 218 (312)
T 1wwl_A 168 QVRVFPALSTLDLSD----------------------------NPELGERGLISALCPLKFPTLQVLALRNA-GMETPSG 218 (312)
T ss_dssp TCCCCSSCCEEECCS----------------------------CTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHH
T ss_pred HhccCCCCCEEECCC----------------------------CCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHH
Confidence 222344555555554 433322 12122 44455555555553 3443221
Q ss_pred --hhhhcccccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCc
Q 000945 925 --SSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKM 1002 (1212)
Q Consensus 925 --~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l 1002 (1212)
......+++|+.|++++|. +...+.. .....+++|+.|+++++. ++.+|.... ++|++|+++++ .+
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N-~l 286 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNS-LRDAAGA-----PSCDWPSQLNSLNLSFTG-LKQVPKGLP----AKLSVLDLSYN-RL 286 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSC-CCSSCCC-----SCCCCCTTCCEEECTTSC-CSSCCSSCC----SEEEEEECCSS-CC
T ss_pred HHHHHHhcCCCCCEEECCCCc-CCcccch-----hhhhhcCCCCEEECCCCc-cChhhhhcc----CCceEEECCCC-CC
Confidence 1222344555666665554 2221100 011224566666666653 555655432 57777777776 45
Q ss_pred cccCcCCcCCCccceEEeccCc
Q 000945 1003 KIFSHRVLSTPRLREVRQNWGL 1024 (1212)
Q Consensus 1003 ~~lp~~~~~~~~L~~l~~~~~~ 1024 (1212)
+.+|. +..+++|+.+++++|.
T Consensus 287 ~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 287 DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCC-TTTSCEEEEEECTTCT
T ss_pred CCChh-HhhCCCCCEEeccCCC
Confidence 66666 6667788888877654
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.36 E-value=1.7e-12 Score=141.26 Aligned_cols=199 Identities=20% Similarity=0.199 Sum_probs=126.7
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
.+.+.++++++.++.++. ...++|++|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..++
T Consensus 16 ~~~~~l~~~~~~l~~ip~-----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-----~~~~~l~ 85 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPS-----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-----GIFKELK 85 (270)
T ss_dssp TTTTEEECTTSCCSSCCS-----CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-----TTTSSCT
T ss_pred CCCCEEEccCCCCCccCC-----CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-----hhhcCCC
Confidence 356778888888877652 123578999999988888888778888899999988777766553 2234477
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC-CccccCCccEEeeccccCcccccchhhhccccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP-SSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
+|++|+++++. +..++ +..+..+++|++|++++|. ++.+++ .+..+++|++|++++| .++.++. ..+..+++
T Consensus 86 ~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~ 158 (270)
T 2o6q_A 86 NLETLWVTDNK-LQALP---IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTS 158 (270)
T ss_dssp TCCEEECCSSC-CCCCC---TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred CCCEEECCCCc-CCcCC---HhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcc
Confidence 88888888754 33332 3445677788888888754 344443 3567778888888775 5666653 23456677
Q ss_pred ccEEEecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCcC-CcCC
Q 000945 934 LTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSHR-VLST 1012 (1212)
Q Consensus 934 L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~~ 1012 (1212)
|+.|++++|. +..++ ..... .+++|++|++++| .+..+|.. +..+
T Consensus 159 L~~L~L~~n~-l~~~~-------------------------------~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~l 204 (270)
T 2o6q_A 159 LKELRLYNNQ-LKRVP-------------------------------EGAFD-KLTELKTLKLDNN-QLKRVPEGAFDSL 204 (270)
T ss_dssp CCEEECCSSC-CSCCC-------------------------------TTTTT-TCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred cceeEecCCc-CcEeC-------------------------------hhHhc-cCCCcCEEECCCC-cCCcCCHHHhccc
Confidence 7777777664 33322 21111 2356666666665 34455543 3456
Q ss_pred CccceEEeccCc
Q 000945 1013 PRLREVRQNWGL 1024 (1212)
Q Consensus 1013 ~~L~~l~~~~~~ 1024 (1212)
++|+.+++++|.
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 666666666554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=2.3e-12 Score=140.29 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=97.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|++|++++|.+..+. ....+++|++|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..+
T Consensus 62 l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 132 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-----GVFDKL 132 (272)
T ss_dssp CTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred CCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH-----HHhccC
Confidence 566666777666665542 33456677777777777777776666777777777777666665543 123346
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|++++|. +..+ .+..+..+++|+.|++++|. ++.+|+. +..+++|+.|++++| .++.+++ ..+..++
T Consensus 133 ~~L~~L~L~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~ 205 (272)
T 3rfs_A 133 TNLTYLNLAHNQ-LQSL---PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLT 205 (272)
T ss_dssp TTCCEEECCSSC-CCCC---CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCT
T ss_pred CCCCEEECCCCc-cCcc---CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCH-HHHhCCc
Confidence 677777777652 3333 13335667777777777764 4455443 466778888888775 5666543 3446677
Q ss_pred cccEEEecCcc
Q 000945 933 CLTKLRIDGCR 943 (1212)
Q Consensus 933 ~L~~L~i~~c~ 943 (1212)
+|+.|++++|+
T Consensus 206 ~L~~L~l~~N~ 216 (272)
T 3rfs_A 206 SLQYIWLHDNP 216 (272)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 77888877775
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.34 E-value=5e-12 Score=138.59 Aligned_cols=130 Identities=18% Similarity=0.112 Sum_probs=67.0
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..++ .....+++|++|++++|.+..+|+..|..+++|+.|+++.|.++.+++ ..+..+
T Consensus 76 l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l 147 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-----GLLTPT 147 (290)
T ss_dssp CTTCCEEECCSSCCSSCC---CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred CCcCCEEECCCCcCCcCc---hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-----hhcccc
Confidence 445555555555555443 122345566666666666666655555666666666666555554432 112234
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 916 (1212)
++|+.|+++++. +..++ +..+..+++|+.|++++| .++.+|..+..+++|+.|+++++
T Consensus 148 ~~L~~L~L~~N~-l~~l~---~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 148 PKLEKLSLANNN-LTELP---AGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECTTSC-CSCCC---TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCCCEEECCCCc-CCccC---HHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 555555555532 33331 122344556666666554 34455555555556666666554
No 88
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.34 E-value=4.7e-13 Score=180.37 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCCcccccchHHHHHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhhh-cCCC-CEEEEEEecCCCC--HHHHH
Q 000945 145 SEGYEAFESRKSILNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK-LKLC-DEVVFVEVSQTPD--VKRIQ 218 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v-~~~F-~~~~wv~vs~~~~--~~~l~ 218 (1212)
+.....++||++++++|.++|. ++.+++|+|+||||+||||||+++|++.++ ..+| +.++||++++.++ .....
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4455678999999999999995 467899999999999999999999998654 3444 6777999998654 44556
Q ss_pred HHHHHHhcCccc-----CCChhHHHHHHHHHHHc-CCcEE-EecCccccccccc
Q 000945 219 GDIADQLGLYIC-----EGSESERAMVLCGLLKK-GKKIL-VLDNIWTSLDLDK 265 (1212)
Q Consensus 219 ~~il~~l~~~~~-----~~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~~~~~~ 265 (1212)
..++..+..... ..+..+....++..|.. +|||| ||||||+..+|+.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~ 253 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA 253 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh
Confidence 677777765421 13445667777777764 13999 9999999988776
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=4.2e-13 Score=151.84 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=55.6
Q ss_pred ceeeeccCCccccccHHHHhh--cccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCcc-chhh
Q 000945 267 LEILSLVDSNIEQLPEEMAQL--TQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNA-SLQE 343 (1212)
Q Consensus 267 Lr~L~ls~~~i~~lp~~i~~L--~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~-~~~~ 343 (1212)
++.++++++.+. |..+..+ .++++|++++| .+...+.. +.++.+|++|++++|.+. .. ....
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~-----------~~~~~~~ 113 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIE-----------VSTLHGI 113 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEEC-----------HHHHHHH
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcC-----------HHHHHHH
Confidence 567888888766 6677777 88899999888 67666665 567888888888888763 22 3344
Q ss_pred hhcCCCCCcceeeecc
Q 000945 344 LKLLSHLTTLEIQICD 359 (1212)
Q Consensus 344 L~~l~~L~~L~l~~~~ 359 (1212)
+..+++|++|+++.|.
T Consensus 114 ~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR 129 (336)
T ss_dssp HTTBCCCSEEECTTCB
T ss_pred HhhCCCCCEEeCcCcc
Confidence 5666677766666553
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=8.1e-12 Score=138.46 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=23.7
Q ss_pred cCcCccEEEEecCCCccccCchhhhhccCCCcEEEecccc
Q 000945 642 YSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 681 (1212)
Q Consensus 642 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 681 (1212)
.+++|++|++++| .++.++. +..+++|++|++++|.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n~ 74 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDNQ 74 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSSC
T ss_pred HcCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCCc
Confidence 4677777777775 4555543 5667777777777664
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=7.1e-13 Score=149.93 Aligned_cols=207 Identities=16% Similarity=0.156 Sum_probs=129.9
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCcccc-chHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENF-RIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
++++.|++++|.+.+..+. ...+++|++|+++++.+... .+..+..+++|+.|+++.+.++...+ ..+..+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-----~~l~~~ 141 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-----NTLAKN 141 (336)
T ss_dssp TTCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-----HHHTTC
T ss_pred ccceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-----HHHhcC
Confidence 6888899988888776532 34678899999998776542 33447888899999988444543211 233447
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc--ccCCccccC-CccEEeecccc-Ccccccchhhhc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN--LVPSSASFK-NLTTLELWYCQ-RLMNLVTSSTAK 929 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~-~L~~L~l~~c~-~l~~l~~~~~~~ 929 (1212)
++|++|++++|..+.... .+..+..+++|++|++++|..++. ++..+..++ +|++|++++|. .++.-.....+.
T Consensus 142 ~~L~~L~L~~~~~l~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TTCSEEECTTCBSCCHHH--HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHH--HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 888888888886555310 023356778888888888855553 555566777 88888888875 443211124556
Q ss_pred ccccccEEEecCcchhh-HhhccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccC
Q 000945 930 SLVCLTKLRIDGCRMLT-EIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIEC 999 (1212)
Q Consensus 930 ~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C 999 (1212)
.+++|+.|++++|..+. ..+. ....+++|+.|++++|..+..-..... ..+++|++|++++|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~-------~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQ-------EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGG-------GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHHHH-------HHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence 77888888888887433 2221 223457777777777753322111001 13567777777776
No 92
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.26 E-value=1.2e-11 Score=111.71 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chhhHHHHHHHHHHHHHHHHHhHhhh
Q 000945 7 SATAKVLGQLVGAIPRQLRNYKSNFDDLKKKTEKLKLTLEDLHLWVDAAKENG-EEIEQSVEKWLISANTTVVEAGKLIE 85 (1212)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~ae~~~-~~~~~~v~~Wl~~lk~~~~~aed~ld 85 (1212)
++++|+...+.+++ ..+.+|+++++.|+++|..|++||.+|+++. +..++.++.|+.+||++||||||++|
T Consensus 5 ~ll~KL~~ll~~E~--------~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 5 NLIPKLGELLTEEF--------KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp SHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788887776665 4568999999999999999999999999864 35689999999999999999999999
Q ss_pred HHHHhh
Q 000945 86 DEEKEK 91 (1212)
Q Consensus 86 ~~~~~~ 91 (1212)
+|.+..
T Consensus 77 ~f~~~~ 82 (115)
T 3qfl_A 77 KFLVQV 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=5.2e-12 Score=140.55 Aligned_cols=205 Identities=15% Similarity=0.009 Sum_probs=109.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCcccc----chHHHhhcCccceeEEEccceeEeccccchhhc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENF----RIGFLERFHNLEKLELRWSSYKEIFSNEEIVEH 849 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~----p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~ 849 (1212)
+++|++|++++|.+.+..+.......+++|++|++++|.+... +...+..+++|+.|+++.|.+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-------- 161 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-------- 161 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC--------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh--------
Confidence 3567777777777766554222114566677777776655542 1122334555555555544443332
Q ss_pred cccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccc--ccC--CccccCCccEEeeccccCcccccch
Q 000945 850 AEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLIN--LVP--SSASFKNLTTLELWYCQRLMNLVTS 925 (1212)
Q Consensus 850 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~--~~~~l~~L~~L~l~~c~~l~~l~~~ 925 (1212)
+..+..+++|++|++++|...+. ++. ....+++|++|++++| .++.++..
T Consensus 162 -------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 215 (310)
T 4glp_A 162 -------------------------CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV 215 (310)
T ss_dssp -------------------------TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred -------------------------HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence 23334455555555555543321 221 1245566666666664 45444311
Q ss_pred --hhhcccccccEEEecCcchhhHh-hccCccccccceeccchhhhhhccCCCcccccCCCceeecCCccEEEeccCCCc
Q 000945 926 --STAKSLVCLTKLRIDGCRMLTEI-ISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKM 1002 (1212)
Q Consensus 926 --~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l 1002 (1212)
..+..+++|++|++++|. +... |.... ....+++|++|+++++ .++.+|... +++|++|++++| .+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~----~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l 284 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNS-LRATVNPSAP----RCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RL 284 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSC-CCCCCCSCCS----SCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CC
T ss_pred HHHHHhcCCCCCEEECCCCC-CCccchhhHH----hccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cC
Confidence 123455667777776665 3322 21110 0111357777777766 356666543 267888888776 45
Q ss_pred cccCcCCcCCCccceEEeccCc
Q 000945 1003 KIFSHRVLSTPRLREVRQNWGL 1024 (1212)
Q Consensus 1003 ~~lp~~~~~~~~L~~l~~~~~~ 1024 (1212)
..+|. ...+++|+.+++++|.
T Consensus 285 ~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 285 NRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCch-hhhCCCccEEECcCCC
Confidence 56655 4567888888887664
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=3.3e-11 Score=129.37 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=119.1
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
.++|+.|++++|.+..+.+ ..+..+++|++|++++|.+..+++..+..+++|+.|+++.|.++.+++ ..+..+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l 106 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-----GVFDHL 106 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred CCCCCEEEccCCCcCccCH--hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-----hHhccc
Confidence 4678899999998888764 334578899999999988888888878889999999999888876654 233457
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC-CccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP-SSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|+++++. +..++ +..+..+++|++|++++| .++.+|+ .+..+++|+.|++++| .++.++. ..+..++
T Consensus 107 ~~L~~L~L~~N~-l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~ 179 (251)
T 3m19_A 107 TQLDKLYLGGNQ-LKSLP---SGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLG 179 (251)
T ss_dssp TTCCEEECCSSC-CCCCC---TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCT
T ss_pred CCCCEEEcCCCc-CCCcC---hhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCH-HHHhCCC
Confidence 889999998863 44442 334577889999999987 5566666 4677889999999885 6777754 3456788
Q ss_pred cccEEEecCcc
Q 000945 933 CLTKLRIDGCR 943 (1212)
Q Consensus 933 ~L~~L~i~~c~ 943 (1212)
+|+.|++++|+
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 89999988876
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=9.2e-12 Score=138.52 Aligned_cols=140 Identities=12% Similarity=0.045 Sum_probs=100.1
Q ss_pred cccCcccEEEEecCCCcccccCCccccCCccEEeeccccCccc--ccchhhhcccccccEEEecCcchhhHhhccCcccc
Q 000945 879 SITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMN--LVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVA 956 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 956 (1212)
..+++|++|++++|......|..+..+++|++|++++|+-... ++....+..+++|++|++++|. +..++... .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~---~ 217 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC---A 217 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH---H
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH---H
Confidence 4688999999999876555556678899999999999753322 3333444688999999999997 54433100 0
Q ss_pred ccceeccchhhhhhccCCCcccc-cCCCcee-ecCCccEEEeccCCCccccCcCCcCCCccceEEeccCccc
Q 000945 957 EDEIVFSKLKWVSLERLENLTSF-CSGNYTL-KFPSLEDLFVIECPKMKIFSHRVLSTPRLREVRQNWGLYK 1026 (1212)
Q Consensus 957 ~~~~~l~~L~~L~l~~~~~L~~l-~~~~~~~-~~~sL~~L~i~~C~~l~~lp~~~~~~~~L~~l~~~~~~~~ 1026 (1212)
.....+++|++|+++++. +..+ |.....+ .+++|++|++++|. ++.+|.++. ++|+.++++.|...
T Consensus 218 ~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCCC
T ss_pred HHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcCC
Confidence 011346899999999985 5555 5443321 13799999999874 668998775 79999999987653
No 96
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.21 E-value=1.5e-11 Score=150.50 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=87.2
Q ss_pred CcccccchHHHHHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhhh-cCCC-CEEEEEEecCCCCHHHHHHHH-
Q 000945 147 GYEAFESRKSILNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK-LKLC-DEVVFVEVSQTPDVKRIQGDI- 221 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v-~~~F-~~~~wv~vs~~~~~~~l~~~i- 221 (1212)
....++||+.+++.|.++|. .+..++|+|+||||+||||||+.+|++.++ ..+| +.++|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 34568999999999999997 356899999999999999999999998765 6889 58999999876 334444443
Q ss_pred --HHHhcCc-----ccCCChhHHHHHHHHHHHcC-CcEE-EecCccccccc
Q 000945 222 --ADQLGLY-----ICEGSESERAMVLCGLLKKG-KKIL-VLDNIWTSLDL 263 (1212)
Q Consensus 222 --l~~l~~~-----~~~~~~~~~~~~l~~~L~~~-kr~L-VLDDVw~~~~~ 263 (1212)
+..++.. ....+.......++..+... +++| ||||||+...+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l 251 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL 251 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHH
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHH
Confidence 3445421 11234456777788888742 6888 99999987543
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=1.3e-12 Score=150.57 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=80.4
Q ss_pred ccceeeeeccccccccccc--cCcccccccceEeEeecCCccc-----cchHHHhhcCccceeEEEccceeEeccccchh
Q 000945 775 SKLEELKLSGKDIAMICQS--QFPKHIFRNLKNLEVVNDESEN-----FRIGFLERFHNLEKLELRWSSYKEIFSNEEIV 847 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~~~-----~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~ 847 (1212)
++|++|++++|.+...... ......+++|++|++++|.+.. +.+..+..+++|+.|+|+.|.++... ...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHH
Confidence 5666666666665421100 0112245566666666665552 12213556667777777755442100 00011
Q ss_pred hccccccccceEeeCCCccchhhhc-cCCCCc--cccCcccEEEEecCCCcc----cccCCc-cccCCccEEeeccccCc
Q 000945 848 EHAEMLTQVKSLKLWELSDLMYIWK-QDSKLD--SITENLESLEVWWCENLI----NLVPSS-ASFKNLTTLELWYCQRL 919 (1212)
Q Consensus 848 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~--~~l~~L~~L~l~~c~~l~----~lp~~~-~~l~~L~~L~l~~c~~l 919 (1212)
..+..+++|+.|++++|. +..... ..+..+ +.+++|++|++++|..-. .+|..+ .++++|+.|++++|+ +
T Consensus 238 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l 315 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-F 315 (386)
T ss_dssp HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-S
T ss_pred HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-C
Confidence 223345667777777664 221100 001222 236777777777765444 366555 446777777777753 4
Q ss_pred ccccc--hhhhcccccccEEEecC
Q 000945 920 MNLVT--SSTAKSLVCLTKLRIDG 941 (1212)
Q Consensus 920 ~~l~~--~~~~~~l~~L~~L~i~~ 941 (1212)
+.... ..+...++.++.+.+..
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 316 SEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp CTTSHHHHHHHHHHHHHTCCEECC
T ss_pred CcchhHHHHHHHHhhhcCcchhhh
Confidence 43321 23334445555444443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=6.7e-11 Score=129.75 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=92.0
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+.++.+ ...+++|++|++++|.+..+|. +..+++|+.|+++.|.++.+. .+..+
T Consensus 67 l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-------~l~~l 133 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN-------GLVHL 133 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG-------GGGGC
T ss_pred CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCCh-------hhcCC
Confidence 5566666666666666542 4456677777777766666553 666777777777755665542 12336
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..+ ..+..+++|+.|++++| .++.+++ +..+++|+.|++++| .++.++ .+..+++
T Consensus 134 ~~L~~L~l~~n~-l~~~-----~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~~ 201 (291)
T 1h6t_A 134 PQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKN 201 (291)
T ss_dssp TTCCEEECCSSC-CCCC-----GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTT
T ss_pred CCCCEEEccCCc-CCcc-----hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh---hhccCCC
Confidence 677777777653 3332 34566777777777776 3444544 567777777777775 566664 2466777
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|+
T Consensus 202 L~~L~l~~n~ 211 (291)
T 1h6t_A 202 LDVLELFSQE 211 (291)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEECcCCc
Confidence 7777777765
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.17 E-value=3.3e-12 Score=147.25 Aligned_cols=241 Identities=13% Similarity=0.022 Sum_probs=161.0
Q ss_pred cccceeeeecccccccccccc--CcccccccceEeEeecCCcc----ccchHH------HhhcCccceeEEEccceeEec
Q 000945 774 TSKLEELKLSGKDIAMICQSQ--FPKHIFRNLKNLEVVNDESE----NFRIGF------LERFHNLEKLELRWSSYKEIF 841 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~----~~p~~~------l~~l~~L~~L~l~c~~l~~~~ 841 (1212)
+++|+.|++++|.+....+.. .....+++|++|+++++.+. .+|.++ +..+++|+.|+++.|.+...-
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 678999999999887653321 12346889999999986544 334443 467899999999977775410
Q ss_pred cccchhhccccccccceEeeCCCccchhhhc-cCCCCcccc---------CcccEEEEecCCCc-cccc---CCccccCC
Q 000945 842 SNEEIVEHAEMLTQVKSLKLWELSDLMYIWK-QDSKLDSIT---------ENLESLEVWWCENL-INLV---PSSASFKN 907 (1212)
Q Consensus 842 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l---------~~L~~L~l~~c~~l-~~lp---~~~~~l~~ 907 (1212)
...+...+..+++|++|++++|. +..... ..+..+..+ ++|++|++++|..- ..+| ..+..+++
T Consensus 111 -~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 111 -QEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp -HHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 00112344568999999999985 221110 011223344 89999999998654 3444 34567889
Q ss_pred ccEEeeccccCccccc----chhhhcccccccEEEecCcchh----hHhhccCccccccceeccchhhhhhccCCCcccc
Q 000945 908 LTTLELWYCQRLMNLV----TSSTAKSLVCLTKLRIDGCRML----TEIISKEEDVAEDEIVFSKLKWVSLERLENLTSF 979 (1212)
Q Consensus 908 L~~L~l~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 979 (1212)
|++|++++| .++... ....+..+++|+.|++++|.-- ..++. ....+++|+.|++++|. +...
T Consensus 189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-------~l~~~~~L~~L~L~~n~-i~~~ 259 (386)
T 2ca6_A 189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-------ALKSWPNLRELGLNDCL-LSAR 259 (386)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-------HGGGCTTCCEEECTTCC-CCHH
T ss_pred cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-------HHccCCCcCEEECCCCC-Cchh
Confidence 999999997 555210 0125568899999999999832 44542 23457899999999985 4432
Q ss_pred -----cCCCceeecCCccEEEeccCCCcc----ccCcCC-cCCCccceEEeccCcc
Q 000945 980 -----CSGNYTLKFPSLEDLFVIECPKMK----IFSHRV-LSTPRLREVRQNWGLY 1025 (1212)
Q Consensus 980 -----~~~~~~~~~~sL~~L~i~~C~~l~----~lp~~~-~~~~~L~~l~~~~~~~ 1025 (1212)
+.......+++|++|++++|.--. .+|..+ .++++|+.+++++|..
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 332100125899999999987544 388877 5589999999998764
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=8.9e-11 Score=120.63 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=87.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..++ ....+++|++|++++|.+..++ .+..+++|+.|+++.|.++...+ ..+..+
T Consensus 43 l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l 111 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKI-----PNLSGL 111 (197)
T ss_dssp HHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGS-----CCCTTC
T ss_pred cCCccEEeccCCCccChH----HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccC-----hhhcCC
Confidence 566777777777666543 2445667777777776655554 25667777777777555543211 123346
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|.--... +..+..+++|++|++++|..++.+| .+..+++|+.|++++| .++.++ .+..+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR---GIEDFPK 182 (197)
T ss_dssp TTCCEEECCSSBCBGGG----HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT---TGGGCSS
T ss_pred CCCCEEEecCCccCcHh----HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH---HhccCCC
Confidence 66777777665421111 3344566677777777666566665 3566667777777665 455543 3455666
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++++
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 6666666654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.16 E-value=3.9e-11 Score=131.68 Aligned_cols=145 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|+++++.+..+. ....+++|++|++++|.+..++. +..+++|+.|+++.|.++.++. +..+
T Consensus 45 l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-------l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-------LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-------GTTC
T ss_pred cCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-------hccC
Confidence 567888888887777663 24567788888888887777776 7778888888888666665432 3346
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..+ ..+..+++|+.|++++|. ++.+ +.+..+++|+.|++++| .++.++. +..+++
T Consensus 112 ~~L~~L~L~~n~-i~~~-----~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 179 (291)
T ss_dssp TTCCEEECTTSC-CCCC-----GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCEEECCCCc-CCCC-----hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC-ccccchh---hcCCCc
Confidence 777888877763 3332 345667777777777763 3444 34566777777777775 5666542 566677
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|.
T Consensus 180 L~~L~L~~N~ 189 (291)
T 1h6t_A 180 LQNLYLSKNH 189 (291)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCc
Confidence 7777777764
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=7e-11 Score=121.42 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=82.8
Q ss_pred cccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCC
Q 000945 798 HIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKL 877 (1212)
Q Consensus 798 ~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 877 (1212)
..+++|+.|+++++.+..+| + +..+++|+.|+++.+.++.+. .+..+++|++|++++|. +.. ..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~n~-l~~---~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-------PISGLSNLERLRIMGKD-VTS---DKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-------GGTTCTTCCEEEEECTT-CBG---GGSCC
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-------hhhcCCCCCEEEeECCc-cCc---ccChh
Confidence 45778888888888888777 3 777888888888844554432 12336777777777653 221 12445
Q ss_pred ccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 878 DSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
+..+++|++|++++|......|..+..+++|+.|++++|..++.++ .+..+++|+.|++++|.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC
Confidence 6667777777777765544455555666777777777765466653 34556666666666664
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.11 E-value=6.6e-11 Score=142.64 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=68.3
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|+|++|.+..+.+ +..+++|+.|+|++|.+..+| .+..+++|+.|+|+.|.+..++. +..+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~-------l~~l 130 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDING-------LVHL 130 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCGG-------GGGC
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCcc-------ccCC
Confidence 4555555555555554432 334555555555555555444 24455555555555444443321 2224
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|+|++|. +..+ ..+..+++|+.|++++|. +..+++ +..+++|+.|+|++| .+..++ .+..+++
T Consensus 131 ~~L~~L~Ls~N~-l~~l-----~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~ 198 (605)
T 1m9s_A 131 PQLESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKN 198 (605)
T ss_dssp TTCSEEECCSSC-CCCC-----GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTT
T ss_pred CccCEEECCCCc-cCCc-----hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh---HHccCCC
Confidence 555555555542 2221 234445555555555543 223322 445555555555553 344442 2344555
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|+
T Consensus 199 L~~L~L~~N~ 208 (605)
T 1m9s_A 199 LDVLELFSQE 208 (605)
T ss_dssp CSEEECCSEE
T ss_pred CCEEEccCCc
Confidence 5555555554
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=3.5e-10 Score=134.58 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=76.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+++++. .. .+|++|++++|.+..+|. .+++|+.|+++.|.++.++. .+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~----l~--~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---------~l 159 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE----LP--ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE---------LP 159 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC----CC--TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---------CC
T ss_pred cCCCCEEEccCCCCCCcch----hh--cCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC---------cC
Confidence 3455555555555554331 11 155666666655555554 35566666666555555432 14
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCc-------cEEeeccccCcccccchh
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNL-------TTLELWYCQRLMNLVTSS 926 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L-------~~L~l~~c~~l~~l~~~~ 926 (1212)
++|+.|++++|. +..+ |. +. ++|+.|++++| .++.+|. +.. +| +.|++++| .++.+| .
T Consensus 160 ~~L~~L~Ls~N~-L~~l----p~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp--~ 224 (571)
T 3cvr_A 160 TSLEVLSVRNNQ-LTFL----PE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIP--E 224 (571)
T ss_dssp TTCCEEECCSSC-CSCC----CC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCC--G
T ss_pred CCcCEEECCCCC-CCCc----ch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecC--H
Confidence 566666666653 3333 22 22 66777777665 4446655 322 55 77777774 666665 2
Q ss_pred hhcccccccEEEecCcchhhHhh
Q 000945 927 TAKSLVCLTKLRIDGCRMLTEII 949 (1212)
Q Consensus 927 ~~~~l~~L~~L~i~~c~~l~~~~ 949 (1212)
.+..+++|+.|++++|+.-..+|
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCH
Confidence 33447777777777776444443
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.11 E-value=1.2e-10 Score=124.86 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=108.0
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
.+.+.++++++.+..++.. ..++++.|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDLT 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-----CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCT
T ss_pred CCCeEEecCCCCccccCCC-----CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----hHhccCC
Confidence 4567788888888877532 23689999999998888888778889999999999777776654 2234478
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhccccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
+|+.|+++++. +..+ .+..+..+++|++|++++| .++.+|+. +..+++|+.|++++| .++.++. ..+..+++
T Consensus 84 ~L~~L~L~~n~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 156 (251)
T 3m19_A 84 ELGTLGLANNQ-LASL---PLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTN 156 (251)
T ss_dssp TCCEEECTTSC-CCCC---CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred cCCEEECCCCc-cccc---ChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcC
Confidence 88888888754 3333 2345567788888888876 45566654 466788888888875 6776653 23456677
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|.
T Consensus 157 L~~L~L~~N~ 166 (251)
T 3m19_A 157 LQTLSLSTNQ 166 (251)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 7777777765
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=1.7e-10 Score=139.03 Aligned_cols=175 Identities=21% Similarity=0.172 Sum_probs=135.2
Q ss_pred cccCCccceeecccCCccceeccCCCcCCCCCccEEEEecCCCcccccccccchhhccCCCCCCccccceeeeeeecccc
Q 000945 698 TFVFPKVTFLKLWNLSELKTFYPGTHTSKWPMLKKLEVYGCDKVKIFTSRFLRFQEINEGQFDIPTQQALFLVEKVTSKL 777 (1212)
Q Consensus 698 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L 777 (1212)
...+++|+.|.+.++. +..++. ...+++|+.|++++| .+..+++ + ..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~----l--------------------~~l~~L 89 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG---IQYLPNVTKLFLNGN-KLTDIKP----L--------------------TNLKNL 89 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT---GGGCTTCCEEECTTS-CCCCCGG----G--------------------GGCTTC
T ss_pred hhcCCCCCEEECcCCC-CCCChH---HccCCCCCEEEeeCC-CCCCChh----h--------------------ccCCCC
Confidence 3458999999998874 444432 346999999999997 4555532 1 127899
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
+.|+|++|.+..+. .+..+++|+.|+|++|.+..++. +..+++|+.|+|+.|.+..+. .+..+++|+
T Consensus 90 ~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~ 156 (605)
T 1m9s_A 90 GWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDIT-------VLSRLTKLD 156 (605)
T ss_dssp CEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCCG-------GGGSCTTCS
T ss_pred CEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCccCCch-------hhcccCCCC
Confidence 99999999998864 45678999999999999998763 889999999999977887652 234589999
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCccccc
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLV 923 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~ 923 (1212)
.|+|++|. +..+. .+..+++|+.|++++| .+..+| .+..+++|+.|++++|+ +...|
T Consensus 157 ~L~Ls~N~-l~~~~-----~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 157 TLSLEDNQ-ISDIV-----PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp EEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE-EECCC
T ss_pred EEECcCCc-CCCch-----hhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc-CcCCc
Confidence 99999975 44432 2778999999999997 455664 47889999999999974 55443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=2.5e-10 Score=135.76 Aligned_cols=138 Identities=17% Similarity=0.147 Sum_probs=85.8
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
.+|+.|++++|.+.+++.. .+++|++|++++|.+..+| ..+++|+.|+++.|.++.++. + ..
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~---l------~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE---L------PA 120 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---C------CT
T ss_pred CCccEEEeCCCCCCccCHh-----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch---h------hc
Confidence 3788888888777765421 1367888888887777777 336777777777666766543 1 23
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCL 934 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 934 (1212)
+|+.|+++++. +..+ |. .+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|. +. ++|
T Consensus 121 ~L~~L~Ls~N~-l~~l----p~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~---l~--~~L 182 (571)
T 3cvr_A 121 SLKHLDVDNNQ-LTML----PE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE---LP--ESL 182 (571)
T ss_dssp TCCEEECCSSC-CSCC----CC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CC--TTC
T ss_pred CCCEEECCCCc-CCCC----CC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch---hh--CCC
Confidence 67777777653 3333 22 45677777777654 444654 4567777777764 4666653 22 567
Q ss_pred cEEEecCcchhhHhh
Q 000945 935 TKLRIDGCRMLTEII 949 (1212)
Q Consensus 935 ~~L~i~~c~~l~~~~ 949 (1212)
+.|++++|. +..+|
T Consensus 183 ~~L~Ls~N~-L~~lp 196 (571)
T 3cvr_A 183 EALDVSTNL-LESLP 196 (571)
T ss_dssp CEEECCSSC-CSSCC
T ss_pred CEEECcCCC-CCchh
Confidence 777776664 44443
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=5.6e-10 Score=115.91 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=116.5
Q ss_pred eeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccce
Q 000945 779 ELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKS 858 (1212)
Q Consensus 779 ~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~ 858 (1212)
.++.+++.+..++ ....++|++|++++|.+..++...+..+++|+.|+++.|.++.+++ ..+..+++|++
T Consensus 11 ~v~c~~~~l~~~p-----~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVP-----TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----GVFNKLTSLTY 80 (208)
T ss_dssp EEECCSSCCSSCC-----SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCE
T ss_pred EEEecCCCccCCC-----CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----hhcCCCCCcCE
Confidence 3444444444443 2234578888888877777777777788888888888777766543 12334678888
Q ss_pred EeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccccccEE
Q 000945 859 LKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKL 937 (1212)
Q Consensus 859 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 937 (1212)
|+++++. +..++ +..+..+++|++|++++|. ++.+|+. +..+++|+.|++++| .++.++. ..+..+++|+.|
T Consensus 81 L~Ls~n~-l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L 153 (208)
T 2o6s_A 81 LNLSTNQ-LQSLP---NGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYI 153 (208)
T ss_dssp EECCSSC-CCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEE
T ss_pred EECCCCc-CCccC---HhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEE
Confidence 8888763 44332 3345678888888888864 5566554 567888999999885 6777653 345678889999
Q ss_pred EecCcchhhHhhccCccccccceeccchhhhhhccCCCcccccCCCc
Q 000945 938 RIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLENLTSFCSGNY 984 (1212)
Q Consensus 938 ~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 984 (1212)
++++|+- ...+++|+.|+++.+..-..+|....
T Consensus 154 ~l~~N~~--------------~~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 154 WLHDNPW--------------DCTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ECCSCCB--------------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EecCCCe--------------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence 9988851 12356788888877654456665433
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=3.1e-11 Score=137.47 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=59.5
Q ss_pred cceEeEeecCCccccchHHH----hhc-CccceeEEEccceeEeccccchhhcccc-ccccceEeeCCCccchhhhcc-C
Q 000945 802 NLKNLEVVNDESENFRIGFL----ERF-HNLEKLELRWSSYKEIFSNEEIVEHAEM-LTQVKSLKLWELSDLMYIWKQ-D 874 (1212)
Q Consensus 802 ~L~~L~l~~~~~~~~p~~~l----~~l-~~L~~L~l~c~~l~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~l~~l~~~-~ 874 (1212)
+|++|++++|.+...+...+ ..+ ++|+.|+++.|.++.... ..+...+.. .++|++|++++|. +...+.. .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l 245 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL 245 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH
Confidence 56666666655554443322 223 466666666554543110 001111222 3467777776653 2211000 0
Q ss_pred CCCccccCcccEEEEecCC-------CcccccCCccccCCccEEeecccc
Q 000945 875 SKLDSITENLESLEVWWCE-------NLINLVPSSASFKNLTTLELWYCQ 917 (1212)
Q Consensus 875 ~~~~~~l~~L~~L~l~~c~-------~l~~lp~~~~~l~~L~~L~l~~c~ 917 (1212)
...+..+++|+.|++++|. .+..++..+..+++|+.|++++++
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1223556778888888875 133455556678889999998864
No 110
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.04 E-value=5.7e-10 Score=91.38 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=62.8
Q ss_pred ceEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEec
Q 000945 1116 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSI 1183 (1212)
Q Consensus 1116 ~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~ 1183 (1212)
|+++.++|+|+|.+|+.++.+++.+++|| ++.+|...++++|.|.+++.++.+++++.|+.+.++++
T Consensus 1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 46788999999999999999999999999 99999999999999999999999999999999998864
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.01 E-value=6.8e-10 Score=126.15 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=123.5
Q ss_pred cccceeeeeccccccccccccCccc-ccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKH-IFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEM 852 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~ 852 (1212)
.+.++.|++++|.+..+.+. ... .+++|+.|+|++|.+..+++..|..+++|+.|+|+.|.++.+++ ..+..
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~ 110 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE-----FLFSD 110 (361)
T ss_dssp CTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTT
T ss_pred CCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH-----HHhCC
Confidence 45789999999999988753 233 68999999999999999998889999999999999888988764 23455
Q ss_pred ccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCc----cccCCccEEeeccccCcccccchhhh
Q 000945 853 LTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSS----ASFKNLTTLELWYCQRLMNLVTSSTA 928 (1212)
Q Consensus 853 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~c~~l~~l~~~~~~ 928 (1212)
+++|+.|+++++. +..+ .+..+..+++|+.|++++| .++.+|... ..+++|+.|+++++ .++.+|.. .+
T Consensus 111 l~~L~~L~L~~N~-i~~~---~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~ 183 (361)
T 2xot_A 111 LQALEVLLLYNNH-IVVV---DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DL 183 (361)
T ss_dssp CTTCCEEECCSSC-CCEE---CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HH
T ss_pred CcCCCEEECCCCc-ccEE---CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-Hh
Confidence 8999999999865 3433 3567788999999999986 566787764 46899999999995 78888643 34
Q ss_pred ccccc--ccEEEecCcc
Q 000945 929 KSLVC--LTKLRIDGCR 943 (1212)
Q Consensus 929 ~~l~~--L~~L~i~~c~ 943 (1212)
..++. |+.|++++++
T Consensus 184 ~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHSCHHHHTTEECCSSC
T ss_pred hhccHhhcceEEecCCC
Confidence 55555 4889998865
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=1.2e-09 Score=115.11 Aligned_cols=132 Identities=19% Similarity=0.160 Sum_probs=70.7
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+.+ ..+..+++|++|++++|.+..+|...+..+++|+.|+++.|.++.+++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----------- 105 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----------- 105 (229)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------
T ss_pred CCCCCEEEcCCCccCccCH--HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-----------
Confidence 3556666666666665543 223345566666666665655555555555555555555444443332
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
..+..+++|+.|++++| .++.+|..+..+++|+.|+++++ .++.++. ..+..+++
T Consensus 106 ----------------------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~ 160 (229)
T 3e6j_A 106 ----------------------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSS 160 (229)
T ss_dssp ----------------------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTT
T ss_pred ----------------------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCC
Confidence 22344555555555553 23455555555666666666653 4555543 33455566
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 6666666554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=1.4e-09 Score=117.12 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=73.9
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+. ....+++|+.|++++|.+..+++ +..+++|+.|+++.|.++.+++.. .
T Consensus 40 l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~--------~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP--------S 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC--------C
T ss_pred cCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc--------c
Confidence 455666666666555542 23345566666666666665554 555666666666655555443211 1
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..+ ..+..+++|+.|++++|. ++.++ .+..+++|+.|++++| .++.+ ..+..+++
T Consensus 106 ~~L~~L~L~~N~-l~~~-----~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDT-----DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKK 173 (263)
T ss_dssp SSCCEEECCSSC-CSBS-----GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred CcccEEEccCCc-cCCC-----hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence 555566655542 3322 234455555555555543 33343 3445555555555553 34443 23344555
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|+
T Consensus 174 L~~L~l~~N~ 183 (263)
T 1xeu_A 174 VNWIDLTGQK 183 (263)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEeCCCCc
Confidence 5555555544
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.95 E-value=1.9e-09 Score=112.58 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=65.7
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLT 854 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~ 854 (1212)
++|+.|++++|.+..+.+ ..+..+++|+.|++++|.+..+++..|.++++|+.|+|+.|.++.+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------ 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP--GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK------------ 97 (220)
T ss_dssp TTCCEEECCSSCCCEECT--TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT------------
T ss_pred cCCCEEECCCCcCCCcCH--hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH------------
Confidence 355555555555555442 122344555555555555555544445555555555555444443322
Q ss_pred ccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccc
Q 000945 855 QVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCL 934 (1212)
Q Consensus 855 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 934 (1212)
..+..+++|+.|++++|..-.-.|..+..+++|+.|+++++ .++.++. ..+..+++|
T Consensus 98 ---------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L 154 (220)
T 2v9t_B 98 ---------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAI 154 (220)
T ss_dssp ---------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTC
T ss_pred ---------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCC
Confidence 22344555555555554322222334455566666666663 4555542 233455666
Q ss_pred cEEEecCcc
Q 000945 935 TKLRIDGCR 943 (1212)
Q Consensus 935 ~~L~i~~c~ 943 (1212)
+.|++++++
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 666666654
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=112.19 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=36.4
Q ss_pred ccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEec
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIF 841 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~ 841 (1212)
+.++.|++++|.+..+.+. ..+..+++|++|++++|.+..++...+..+++|+.|+++.|.++.++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp TTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 3456666666666655321 11334556666666666666665555556666666666655554443
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=8.5e-10 Score=125.56 Aligned_cols=245 Identities=13% Similarity=0.044 Sum_probs=129.0
Q ss_pred cceeeeccCCcccccc-----HHHHhhc-ccccccccCCCCCcccchhHhhcc-----ccCceeecCCCcceeeeecccc
Q 000945 266 KLEILSLVDSNIEQLP-----EEMAQLT-QLRLFDLSGCSKLKVIPPNLLSGL-----SRLEDLYMGNTSVKWEFEGLNV 334 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp-----~~i~~L~-~L~~L~Ls~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~w~~~~~~~ 334 (1212)
.|+.|++++|.+...+ ..+..+. +|++|++++| .+...+...+..+ .+|++|++++|.+.....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~---- 97 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS---- 97 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH----
Confidence 3666666666666554 4455565 6666677666 5655544444444 666666666666541111
Q ss_pred CCCccchhhhhcC-CCCCcceeeecccccCCCCcccccceEEeEEEcCcccccCCCccceeeeeccccChHHHHHHH---
Q 000945 335 GRSNASLQELKLL-SHLTTLEIQICDAMILPKGLFSKKLERYKIFIGDEWDWSGNYKNKRVLKLKLYTSNVDEVIMQ--- 410 (1212)
Q Consensus 335 ~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~p~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~--- 410 (1212)
......+..+ .+|+.|+++.|.+...+.. .+...
T Consensus 98 ---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------------------------------------~l~~~l~~ 135 (362)
T 3goz_A 98 ---DELVKTLAAIPFTITVLDLGWNDFSSKSSS---------------------------------------EFKQAFSN 135 (362)
T ss_dssp ---HHHHHHHHTSCTTCCEEECCSSCGGGSCHH---------------------------------------HHHHHHTT
T ss_pred ---HHHHHHHHhCCCCccEEECcCCcCCcHHHH---------------------------------------HHHHHHHh
Confidence 1111223344 5666666666655433221 11111
Q ss_pred -hccceEEEeccCCCcc----cccccCCcccc-CCCcEEEeecCCCceeeecCcchhccccc-cccceeeccccccccee
Q 000945 411 -LKGIEELYLDEVPGIK----NVLYDLDIEGF-LQLKHLHVQNNPFILFIVDSMAWVRYNAF-LLLESLVLHNLIHLEKI 483 (1212)
Q Consensus 411 -l~~l~~L~l~~~~~~~----~~~~~l~~~~l-~~L~~L~l~~~~~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~l~~i 483 (1212)
...++.|.+.++.-.. .+...+. .+ ++|++|++++|. +..............+ ++|+.|+++++. +...
T Consensus 136 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~ 211 (362)
T 3goz_A 136 LPASITSLNLRGNDLGIKSSDELIQILA--AIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLK 211 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGS
T ss_pred CCCceeEEEccCCcCCHHHHHHHHHHHh--cCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChh
Confidence 1356666665443221 1111111 33 389999999883 2221110000112334 589999999874 3321
Q ss_pred ec--ccCCccc-cCCccEEEEecCCCCCccCc---hhhhccCCCccEEEEccCcCcchhhcccccCCccCCccCceeccc
Q 000945 484 CL--GQLRAES-FYKLKIIKVRNCDKLKNIFS---FSFVRGLPQLQTLNVINCKNMKEIFTVGRENDVDCHEVDKIEFSQ 557 (1212)
Q Consensus 484 ~~--~~~~~~~-l~~L~~L~L~~c~~l~~l~~---~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~l~~l~~ 557 (1212)
.. .+..+.. .++|++|+|++| .+...+. ...+..+++|++|++++|. +..+..-+ .......+..+++
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~----~~~l~~~~~~l~~ 285 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQ----CKALGAAFPNIQK 285 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHH----HHHHHTTSTTCCE
T ss_pred HHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHH----HHHHHHHhccCCc
Confidence 10 1222333 358999999985 6766543 1234678999999999986 22211100 0000014556788
Q ss_pred ccEEecccCC
Q 000945 558 LHSLTLKFLP 567 (1212)
Q Consensus 558 L~~L~l~~~~ 567 (1212)
|+.|++++.+
T Consensus 286 L~~LdL~~N~ 295 (362)
T 3goz_A 286 IILVDKNGKE 295 (362)
T ss_dssp EEEECTTSCB
T ss_pred eEEEecCCCc
Confidence 8899988754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.95 E-value=2e-09 Score=113.31 Aligned_cols=107 Identities=21% Similarity=0.098 Sum_probs=76.7
Q ss_pred ccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhccc
Q 000945 853 LTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSL 931 (1212)
Q Consensus 853 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 931 (1212)
+++|+.|+++++. +..++ +..+..+++|+.|++++| .++.+|+. +..+++|+.|+++++ .++.+| ..+..+
T Consensus 63 l~~L~~L~L~~N~-l~~i~---~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~~~~l 134 (229)
T 3e6j_A 63 LINLKELYLGSNQ-LGALP---VGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELP--RGIERL 134 (229)
T ss_dssp CTTCCEEECCSSC-CCCCC---TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCC--TTGGGC
T ss_pred ccCCcEEECCCCC-CCCcC---hhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccC--cccccC
Confidence 4555555555533 23331 234567888999999987 56667665 578999999999995 788887 455889
Q ss_pred ccccEEEecCcchhhHhhccCccccccceeccchhhhhhccCC
Q 000945 932 VCLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 932 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
++|+.|++++|. +..++.. ....+++|+.|++.+++
T Consensus 135 ~~L~~L~L~~N~-l~~~~~~------~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 135 THLTHLALDQNQ-LKSIPHG------AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTT------TTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCc-CCccCHH------HHhCCCCCCEEEeeCCC
Confidence 999999999986 6666531 23457899999999886
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=1e-09 Score=113.82 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=121.6
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|++|++++|.+..+.+ .....+++|++|++++|.+..+|...+..+++|+.|+++.|.++.+++. .+..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPN--GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-----VFDKL 99 (208)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTC
T ss_pred CCCCcEEEcCCCccCcCCh--hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh-----HhcCc
Confidence 5689999999999987764 2345789999999999999999998889999999999998888876542 23458
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
++|+.|+++++. +..+ .+..+..+++|++|++++|. ++.+|+. +..+++|+.|++++++-. ..++
T Consensus 100 ~~L~~L~L~~N~-l~~~---~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~ 165 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSL---PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCP 165 (208)
T ss_dssp TTCCEEECCSSC-CCCC---CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC---------CCTT
T ss_pred cCCCEEEcCCCc-Cccc---CHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee---------cCCC
Confidence 999999999864 4444 23446789999999999974 5566654 678999999999997422 3456
Q ss_pred cccEEEecCcchhhHhh
Q 000945 933 CLTKLRIDGCRMLTEII 949 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~ 949 (1212)
.|+.|+++.+..-..+|
T Consensus 166 ~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTHHHHHHHHHCTTTBB
T ss_pred CHHHHHHHHHhCCceee
Confidence 68888888776555555
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=112.11 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=117.4
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccc-hHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFR-IGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p-~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
+.++++++.+..++. .....++.|++++|.+..++ ...+..+++|+.|+++.|.++.+++ ..+..+++|
T Consensus 14 ~~l~~s~n~l~~iP~-----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-----GAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCS-----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-----TTTTTCTTC
T ss_pred CEeEeCCCCcccCcc-----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-----HHhCCCCCC
Confidence 478888888887653 22456799999999999884 4668899999999999888988764 234558999
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccE
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTK 936 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 936 (1212)
+.|+++++. +..+ .+..+..+++|++|++++|......|..+..+++|+.|++++| .++.+++ ..+..+++|+.
T Consensus 84 ~~L~Ls~N~-l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~ 157 (220)
T 2v70_A 84 NEILLTSNR-LENV---QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLST 157 (220)
T ss_dssp CEEECCSSC-CCCC---CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCE
T ss_pred CEEECCCCc-cCcc---CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCE
Confidence 999999864 4443 2345778999999999997655545667788999999999995 7877743 45678899999
Q ss_pred EEecCcc
Q 000945 937 LRIDGCR 943 (1212)
Q Consensus 937 L~i~~c~ 943 (1212)
|++++++
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 9999887
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=3.8e-11 Score=143.90 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=93.2
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCC-------------ccccchHHHhhcCccceeE-EEccceeE
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDE-------------SENFRIGFLERFHNLEKLE-LRWSSYKE 839 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------~~~~p~~~l~~l~~L~~L~-l~c~~l~~ 839 (1212)
.++|+.|++++|.+..++ .....+++|+.|+++++. ....++..+.++++|+.|+ ++++.+..
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp---~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQ---SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTSSSCCCCHHHHHHHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CccceeccCChhhHHhhH---HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 567777888888887775 344567788888876542 2334445577888888887 44554433
Q ss_pred eccccchhhccc--cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeecccc
Q 000945 840 IFSNEEIVEHAE--MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQ 917 (1212)
Q Consensus 840 ~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 917 (1212)
+....-....+. ....|+.|+++++ .+..+ |. ++.+++|+.|++++|. ++.+|..++.+++|+.|++++|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~l----p~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVL----CH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN- 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSC----CC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-
T ss_pred hhhhhhhcccccccCccCceEEEecCC-CCCCC----cC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCC-
Confidence 221100000000 0235667777765 34444 33 6667777777777653 4467766677777777777764
Q ss_pred CcccccchhhhcccccccEEEecCcc
Q 000945 918 RLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 918 ~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
.++.+| .+..+++|+.|++++|.
T Consensus 497 ~l~~lp---~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 497 ALENVD---GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CCCCCG---GGTTCSSCCEEECCSSC
T ss_pred CCCCCc---ccCCCCCCcEEECCCCC
Confidence 566654 34566677777776664
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.92 E-value=3e-09 Score=111.05 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=68.7
Q ss_pred CCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCc
Q 000945 875 SKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEE 953 (1212)
Q Consensus 875 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 953 (1212)
+..+..+++|++|++++| .++.+|+. +..+++|+.|+++++ .++.+++ ..+..+++|+.|++++|. +..++..
T Consensus 73 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-- 146 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRV-DAFQDLHNLNLLSLYDNK-LQTIAKG-- 146 (220)
T ss_dssp TTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT--
T ss_pred HHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCH-HHcCCCCCCCEEECCCCc-CCEECHH--
Confidence 445667788899999886 45677765 467999999999995 7887754 456788999999999987 5555521
Q ss_pred cccccceeccchhhhhhccCC
Q 000945 954 DVAEDEIVFSKLKWVSLERLE 974 (1212)
Q Consensus 954 ~~~~~~~~l~~L~~L~l~~~~ 974 (1212)
....+++|+.|++.+++
T Consensus 147 ----~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 147 ----TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ----TTTTCTTCCEEECCSSC
T ss_pred ----HHhCCCCCCEEEeCCCC
Confidence 23447889999999876
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=5.3e-10 Score=120.46 Aligned_cols=144 Identities=18% Similarity=0.167 Sum_probs=100.7
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+.++..++++++.+..+. ....+++|+.|+++++.+..+| .+..+++|+.|+++.|.++.+++ +..+
T Consensus 18 l~~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-------l~~l 84 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-------LKDL 84 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred HHHHHHHHhcCCCccccc----chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-------hccC
Confidence 456777778777777664 3456788888888888888887 37788888888888777776654 3347
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhccccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVC 933 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 933 (1212)
++|+.|++++|. +..++ .+.. ++|+.|++++| .++.++ .+..+++|+.|++++| .++.++ .+..+++
T Consensus 85 ~~L~~L~L~~N~-l~~l~-----~~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~ 151 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLN-----GIPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIV---MLGFLSK 151 (263)
T ss_dssp SSCCEEECCSSC-CSCCT-----TCCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCG---GGGGCTT
T ss_pred CCCCEEECCCCc-cCCcC-----cccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCCh---HHccCCC
Confidence 888888888764 44442 1222 77888888876 445554 3667788888888875 576663 3566777
Q ss_pred ccEEEecCcc
Q 000945 934 LTKLRIDGCR 943 (1212)
Q Consensus 934 L~~L~i~~c~ 943 (1212)
|+.|++++|.
T Consensus 152 L~~L~L~~N~ 161 (263)
T 1xeu_A 152 LEVLDLHGNE 161 (263)
T ss_dssp CCEEECTTSC
T ss_pred CCEEECCCCc
Confidence 8888887775
No 123
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=98.91 E-value=5.4e-09 Score=87.03 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=63.9
Q ss_pred cceEEEEEEEecchhHHHHHHhHhccCC-CeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEe
Q 000945 1115 TKQKAVLKLEIHGEKARQKAFSIVSKFT-GVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1115 ~~~~~~~~v~~~c~~c~~~~~~~~~~~~-gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
||++++++|+|+|++|+.++.+++.+++ ||.++.+|...++++|.+.+++.++.+.+++.|+.+..+.
T Consensus 3 ~m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 3 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 4678899999999999999999999999 9999999999999999999999999999999999887764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=3.1e-10 Score=136.05 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=60.3
Q ss_pred ccCCCcEEEeecCCCceeeecCcchhccccccccceeecccccccceeecccCCccccCCccEEEEecCCCCCccC-chh
Q 000945 436 GFLQLKHLHVQNNPFILFIVDSMAWVRYNAFLLLESLVLHNLIHLEKICLGQLRAESFYKLKIIKVRNCDKLKNIF-SFS 514 (1212)
Q Consensus 436 ~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~l~~i~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~~~ 514 (1212)
.+++|+.|++++|. +..+|.. ...+++|+.|+|+++ .++. .| .++.+++|++|+|++ +.++.++ + .
T Consensus 461 ~l~~L~~L~Ls~N~-l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~---lp-~l~~l~~L~~L~Ls~-N~l~~~~~p-~ 527 (567)
T 1dce_A 461 QLLLVTHLDLSHNR-LRALPPA-----LAALRCLEVLQASDN-ALEN---VD-GVANLPRLQELLLCN-NRLQQSAAI-Q 527 (567)
T ss_dssp GGTTCCEEECCSSC-CCCCCGG-----GGGCTTCCEEECCSS-CCCC---CG-GGTTCSSCCEEECCS-SCCCSSSTT-G
T ss_pred ccccCcEeecCccc-ccccchh-----hhcCCCCCEEECCCC-CCCC---Cc-ccCCCCCCcEEECCC-CCCCCCCCc-H
Confidence 67788888888773 3344432 456778888888776 3333 24 577788888888887 4677763 2 4
Q ss_pred hhccCCCccEEEEccCcCcchhhc
Q 000945 515 FVRGLPQLQTLNVINCKNMKEIFT 538 (1212)
Q Consensus 515 ~~~~L~~L~~L~l~~c~~l~~l~~ 538 (1212)
.+..+++|++|+++++. +..+|.
T Consensus 528 ~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 528 PLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp GGGGCTTCCEEECTTSG-GGGSSS
T ss_pred HHhcCCCCCEEEecCCc-CCCCcc
Confidence 57788888888888866 555543
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.87 E-value=2.1e-09 Score=122.14 Aligned_cols=156 Identities=18% Similarity=0.120 Sum_probs=118.2
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHh-hcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLE-RFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~-~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
+.++++++++..++. .....++.|+|++|.+..++...+. .+++|+.|+|+.|.++.+++ ..+..+++|
T Consensus 21 ~~l~c~~~~l~~iP~-----~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-----SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-----EAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCS-----SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-----TTTTTCTTC
T ss_pred CEEEeCCCCcCccCc-----cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-----hhccCCCCC
Confidence 467777777777653 2245689999999999999988777 89999999999888988764 234558999
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhh--cccccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTA--KSLVCL 934 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~l~~L 934 (1212)
+.|+++++. +..++ +..+..+++|+.|++++|....-.|..+..+++|+.|++++| .++.+|...+. ..+++|
T Consensus 91 ~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 91 RYLDLSSNH-LHTLD---EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp CEEECCSSC-CCEEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTC
T ss_pred CEEECCCCc-CCcCC---HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcC
Confidence 999999864 55552 445778899999999997654444566788999999999995 78888643221 568899
Q ss_pred cEEEecCcchhhHhh
Q 000945 935 TKLRIDGCRMLTEII 949 (1212)
Q Consensus 935 ~~L~i~~c~~l~~~~ 949 (1212)
+.|+++++. +..++
T Consensus 166 ~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 166 MLLDLSSNK-LKKLP 179 (361)
T ss_dssp CEEECCSSC-CCCCC
T ss_pred CEEECCCCC-CCccC
Confidence 999999886 54444
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=2.9e-09 Score=106.15 Aligned_cols=61 Identities=26% Similarity=0.254 Sum_probs=26.9
Q ss_pred cCcccEEEEecCCCccccc--CCccccCCccEEeeccccCcccccc--hhhhcccccccEEEecCcc
Q 000945 881 TENLESLEVWWCENLINLV--PSSASFKNLTTLELWYCQRLMNLVT--SSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 881 l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~l~~L~~L~i~~c~ 943 (1212)
+++|++|++++| .++.+| ..+..+++|+.|++++| .++.++. ...+..+++|+.|++++|.
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 444444554444 233332 23344555555555553 3444332 1133444555555555543
No 127
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.6e-08 Score=86.94 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred cceEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEecCCC
Q 000945 1115 TKQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPA 1186 (1212)
Q Consensus 1115 ~~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~ 1186 (1212)
++++++++|.|+|.+|+.++.+++.+++||.++.+|...++++|.+.+++.++.+.+++.++.+.++..+++
T Consensus 17 ~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~ 88 (98)
T 2crl_A 17 TLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSG 88 (98)
T ss_dssp CCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCC
T ss_pred cceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCC
Confidence 356788999999999999999999999999999999999999999999999999999999999988865544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=6.5e-09 Score=103.53 Aligned_cols=135 Identities=24% Similarity=0.155 Sum_probs=105.4
Q ss_pred cccceeeeecccccc--ccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccc
Q 000945 774 TSKLEELKLSGKDIA--MICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAE 851 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~ 851 (1212)
+++|+.|++++|.+. .++ .....+++|+.|++++|.+..+ ..+..+++|+.|+++.|.+...++ ..+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-----MLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-----HHHH
T ss_pred cccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-----HHHh
Confidence 688999999999988 553 2346789999999999988887 448889999999999877876432 2234
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC----CccccCCccEEeeccccCccccc
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP----SSASFKNLTTLELWYCQRLMNLV 923 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~l~ 923 (1212)
.+++|+.|++++|. +..++. +..+..+++|+.|++++|. ++.+|+ .+..+++|+.|++++| .+..+|
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~--~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDIST--LEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGG--GGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred hCCCCCEEeccCCc-cCcchh--HHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 48999999999974 555421 2567789999999999974 556665 5778999999999997 455554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=2.5e-08 Score=111.67 Aligned_cols=101 Identities=16% Similarity=-0.002 Sum_probs=56.1
Q ss_pred cCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCccc-EEEEecCCCcccccC-C
Q 000945 824 FHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE-SLEVWWCENLINLVP-S 901 (1212)
Q Consensus 824 l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~lp~-~ 901 (1212)
+++|+.|+|+.|+++.++. ..+..+++|++|++.+. +..++ ...+.++++|+ .+++.+ .++.+++ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~-----~aF~~~~~L~~l~l~~n--i~~I~---~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD-----FTFAQKKYLLKIKLPHN--LKTIG---QRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECT-----TTTTTCTTCCEEECCTT--CCEEC---TTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCCcceecH-----hhhhCCCCCCEEECCcc--cceeh---HHHhhCChhccEEEEEcc--cceEEchhh
Confidence 5556666665444555442 22334556666666552 44442 34455666666 666665 5555543 3
Q ss_pred ccccCCccEEeeccccCcccccchhhhcccccccEEE
Q 000945 902 SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLR 938 (1212)
Q Consensus 902 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 938 (1212)
+..+++|+.|++++ ++++.++. ..+.++++|+.++
T Consensus 293 F~~c~~L~~l~l~~-n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 293 FMGCDNLRYVLATG-DKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTEEEEEECS-SCCCEECT-TTTCTTCCCCEEE
T ss_pred hhCCccCCEEEeCC-CccCccch-hhhcCCcchhhhc
Confidence 45567777777755 36666643 3445666777665
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.69 E-value=8.5e-09 Score=100.28 Aligned_cols=127 Identities=24% Similarity=0.247 Sum_probs=67.7
Q ss_pred cccceeeeecccccc--ccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccc
Q 000945 774 TSKLEELKLSGKDIA--MICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAE 851 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~ 851 (1212)
+++|+.|++++|.+. .++ .....+++|+.|++++|.+..+ ..+..+++|+.|+++.|.++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~----------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG----------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-----------
T ss_pred CccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-----------
Confidence 456777777776665 332 1223455666666666555554 2244555555555554444331
Q ss_pred cccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCccccc--CCccccCCccEEeeccccCcccccc--hhh
Q 000945 852 MLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLV--PSSASFKNLTTLELWYCQRLMNLVT--SST 927 (1212)
Q Consensus 852 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~l~~--~~~ 927 (1212)
+ |..+..+++|++|++++|. ++.+| ..+..+++|+.|++++| .++.++. ...
T Consensus 80 ------------------~----~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 135 (149)
T 2je0_A 80 ------------------L----EVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENV 135 (149)
T ss_dssp ------------------T----HHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHH
T ss_pred ------------------H----HHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHH
Confidence 1 2223345556666665543 33332 44566677777777765 4555543 134
Q ss_pred hcccccccEEEec
Q 000945 928 AKSLVCLTKLRID 940 (1212)
Q Consensus 928 ~~~l~~L~~L~i~ 940 (1212)
+..+++|+.|+++
T Consensus 136 ~~~l~~L~~L~l~ 148 (149)
T 2je0_A 136 FKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEETTB
T ss_pred HHHCCCcccccCC
Confidence 5666777777664
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=4e-09 Score=130.74 Aligned_cols=106 Identities=16% Similarity=0.034 Sum_probs=62.7
Q ss_pred cccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCC
Q 000945 798 HIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKL 877 (1212)
Q Consensus 798 ~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 877 (1212)
..+++|+.|+|++|.+..+|... ..+++|+.|+|+.|.++.++. .+..+++|+.|+|++|. +..+ |..
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~------~~~~l~~L~~L~Ls~N~-l~~l----p~~ 288 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPA------EIKNLSNLRVLDLSHNR-LTSL----PAE 288 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCG------GGGGGTTCCEEECTTSC-CSSC----CSS
T ss_pred ccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccCh------hhhCCCCCCEEeCcCCc-CCcc----Chh
Confidence 34566677777776666666653 366666666666556654432 23345666666666653 3333 455
Q ss_pred ccccCcccEEEEecCCCcccccCCccccCCccEEeeccc
Q 000945 878 DSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 916 (1212)
+..+++|++|++++| .++.+|..++.+++|+.|+|++|
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence 566666666666665 34566666666666666666664
No 132
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=98.67 E-value=5.6e-08 Score=79.79 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=59.9
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEE--EecCHHHHHHHHHhhcCceEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVI--GDIDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~--g~~d~~~~~~~l~k~~~~~~~ 1180 (1212)
|++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|. +.+++.++.+.+++.|+.+++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence 67889998 99999999999999999999999999999999998 669999999999999988765
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.67 E-value=9.2e-09 Score=100.06 Aligned_cols=109 Identities=19% Similarity=0.139 Sum_probs=76.9
Q ss_pred ccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccc
Q 000945 853 LTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLV 932 (1212)
Q Consensus 853 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 932 (1212)
+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|++++| .++.++....+..++
T Consensus 41 l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 41 FEELEFLSTINVG-LTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE 113 (149)
T ss_dssp CTTCCEEECTTSC-CCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCT
T ss_pred cCCCcEEECcCCC-CCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCC
Confidence 5566666666652 3332 34567889999999988765557776677999999999996 587765446678899
Q ss_pred cccEEEecCcchhhHhhccCccccccceeccchhhhhhcc
Q 000945 933 CLTKLRIDGCRMLTEIISKEEDVAEDEIVFSKLKWVSLER 972 (1212)
Q Consensus 933 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 972 (1212)
+|+.|++++|. +..++... ......+++|+.|++++
T Consensus 114 ~L~~L~l~~N~-l~~~~~~~---~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 114 NLKSLDLFNCE-VTNLNDYR---ENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTCG-GGGSTTHH---HHHHHHCTTCCEETTBC
T ss_pred CCCEEeCcCCc-ccchHHHH---HHHHHHCCCcccccCCC
Confidence 99999999996 55554200 00234578898888763
No 134
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=98.63 E-value=1.2e-07 Score=79.00 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=61.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEEe
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++.++.+++++.|+.+++++
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 578899997 9999999999999999999999999999999999765 689999999999999988774
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.59 E-value=2.1e-08 Score=124.18 Aligned_cols=156 Identities=15% Similarity=0.044 Sum_probs=93.1
Q ss_pred ccceeeeeccccccccccccCcccccccceEe-----EeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhc
Q 000945 775 SKLEELKLSGKDIAMICQSQFPKHIFRNLKNL-----EVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEH 849 (1212)
Q Consensus 775 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L-----~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~ 849 (1212)
+.++.|+|.++.+...... ......|..+ +++.|.+. +++..+..+++|+.|+|+.|.+..+++.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------ 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISAN------ 242 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGG------
T ss_pred CccceEEeeCCCCCcchhh---HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChh------
Confidence 4566777766666554321 1111222222 22233344 4556688999999999998778766532
Q ss_pred cccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhc
Q 000945 850 AEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAK 929 (1212)
Q Consensus 850 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 929 (1212)
+..+++|+.|+|++|. +..+ |..+..+++|+.|++++|. ++.+|..++.+++|++|+|++| .++.+|. .+.
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~~l----p~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~--~~~ 313 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LTEL----PAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPW--EFG 313 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CSCC----CGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCS--STT
T ss_pred hcCCCCCCEEEeeCCc-Cccc----ChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccCh--hhh
Confidence 3358999999999974 5555 6778999999999999976 5589999999999999999996 7888874 478
Q ss_pred ccccccEEEecCcchhhHhh
Q 000945 930 SLVCLTKLRIDGCRMLTEII 949 (1212)
Q Consensus 930 ~l~~L~~L~i~~c~~l~~~~ 949 (1212)
.+++|+.|++++|.....+|
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHH
T ss_pred cCCCccEEeCCCCccCCCCh
Confidence 99999999999998444444
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.59 E-value=7.7e-08 Score=97.89 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=75.6
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchH-HHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIG-FLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
+.++++++.+..++. ....+|+.|++++|.+..++.. .+..+++|+.|+++.|.++.+.+ ..+..+++|
T Consensus 11 ~~l~~s~~~l~~ip~-----~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCSSCCS-----CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTC
T ss_pred CEEEcCCCCcCcCcc-----CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-----hHcCCcccC
Confidence 566777777766542 1233777888888777777653 46777777777777666665543 223345666
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCccccCCccEEeeccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 916 (1212)
+.|+++++. +..+ .+..+..+++|++|++++|...+..|..+..+++|+.|+++++
T Consensus 81 ~~L~Ls~N~-l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 81 QELQLGENK-IKEI---SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSCC-CCEE---CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCc-CCcc---CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 777766643 3332 2334556666666666665444444555556666666666664
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=6.4e-08 Score=108.32 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=123.3
Q ss_pred cccceeeeeccccccc--ccc----------------ccCcccc--------cccceEeEeecCCccccchHHHhhcCcc
Q 000945 774 TSKLEELKLSGKDIAM--ICQ----------------SQFPKHI--------FRNLKNLEVVNDESENFRIGFLERFHNL 827 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~--l~~----------------~~~~~~~--------~~~L~~L~l~~~~~~~~p~~~l~~l~~L 827 (1212)
+++|+.|+|++|.+.. ... ....+.+ +++|+.|+|.+ .+..++...|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 5678888888887771 110 0112234 67888888887 7777888888888888
Q ss_pred ceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCccc----------------------
Q 000945 828 EKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLE---------------------- 885 (1212)
Q Consensus 828 ~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~---------------------- 885 (1212)
+.|++..|.+..+.+. .+..+.++..+.............-....+..+.+|+
T Consensus 127 ~~l~l~~n~i~~i~~~-----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPE-----ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp CEEEBCCSSCCEECTT-----SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred ceEEcCCCCccccchh-----hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 8888886666555431 2222333444433221000000000011122222333
Q ss_pred ----EEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcchhhHhhccCcccccccee
Q 000945 886 ----SLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRMLTEIISKEEDVAEDEIV 961 (1212)
Q Consensus 886 ----~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 961 (1212)
.+.+.+.-....+..-...+++|+.|++.++ +++.++. ..+..+++|+.|++.++ +..++. .....
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~------~aF~~ 271 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ------RVFSN 271 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT------TTTTT
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH------HHhhC
Confidence 3333321100000000012677888888774 5777754 34567788888888764 555442 12334
Q ss_pred ccchh-hhhhccCCCcccccCCCceeecCCccEEEeccCCCccccCc-CCcCCCccceEEe
Q 000945 962 FSKLK-WVSLERLENLTSFCSGNYTLKFPSLEDLFVIECPKMKIFSH-RVLSTPRLREVRQ 1020 (1212)
Q Consensus 962 l~~L~-~L~l~~~~~L~~l~~~~~~~~~~sL~~L~i~~C~~l~~lp~-~~~~~~~L~~l~~ 1020 (1212)
+++|+ .+.+.+ +++.++..... .|++|+.+++.+ ..++.++. .+.+|++|+.++.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 56666 666665 56777665543 467888888754 35666665 3466788887763
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.59 E-value=3.4e-08 Score=99.05 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=40.6
Q ss_pred cccCcccEEEEecCCCcccccC--CccccCCccEEeeccccCcccccch--hhhcccccccEEEecCcch
Q 000945 879 SITENLESLEVWWCENLINLVP--SSASFKNLTTLELWYCQRLMNLVTS--STAKSLVCLTKLRIDGCRM 944 (1212)
Q Consensus 879 ~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~l~~L~~L~i~~c~~ 944 (1212)
..+++|++|++++|. ++.+|. .+..+++|+.|++++| .+..+|.. ..+..+++|+.|++++|..
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 456666666666653 355554 4566777777777775 45555421 1356778888888887763
No 139
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=98.57 E-value=8.7e-08 Score=79.53 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=61.3
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEe
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
+|++++++|. |+|.+|+.++.+++.+ +||..+.+|...++++|.++ ++.++.+.+++.|+.+.+.+
T Consensus 3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence 5788999998 9999999999999999 99999999999999999999 99999999999998877654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=1e-07 Score=95.47 Aligned_cols=129 Identities=15% Similarity=0.096 Sum_probs=64.0
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+. ......++|++|++++|.+..++ .+..+++|+.|+++.|.++.+++. .+..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~---~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEG-----LDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCCCSCC---CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSC-----HHHHC
T ss_pred cCCceEEEeeCCCCchhH---HhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcc-----hhhcC
Confidence 556666666666665542 11112235666666665555552 255555666666665555554321 11235
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC----ccccCCccEEeeccc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS----SASFKNLTTLELWYC 916 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l~~c 916 (1212)
++|+.|+++++. +..++. ...+..+++|+.|++++|+ ++.+|.. +..+++|+.|+++++
T Consensus 88 ~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 556666665543 233311 1134455566666666543 2344442 445556666665554
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=2.5e-07 Score=93.97 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=66.9
Q ss_pred eeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccc
Q 000945 778 EELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVK 857 (1212)
Q Consensus 778 ~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~ 857 (1212)
+.++++++.+..++. ...++|+.|++++|.+..+|. .+..+++|+.|+++.|.++.+++ ..+..+++|+
T Consensus 13 ~~l~~~~~~l~~ip~-----~~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----GIPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLL 81 (193)
T ss_dssp TEEECTTSCCSSCCS-----CCCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CEEEcCCCCCCcCCC-----CCCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCC
Confidence 456677777776642 123578888888888888874 47777888888877666665543 1223355555
Q ss_pred eEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCC-ccccCCccEEeecc
Q 000945 858 SLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWY 915 (1212)
Q Consensus 858 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~ 915 (1212)
.|+++++. +..+ .+..+..+++|+.|++++|. ++.+|+. +..+++|+.|++++
T Consensus 82 ~L~Ls~N~-l~~i---~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 82 TLILSYNR-LRCI---PPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp EEECCSSC-CCBC---CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCc-cCEe---CHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 55555532 2222 12234444555555555432 3333332 33344444444444
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.46 E-value=3.2e-07 Score=92.02 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=65.5
Q ss_pred ceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhcccccccc
Q 000945 777 LEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQV 856 (1212)
Q Consensus 777 L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L 856 (1212)
.+.++++++.+..++. ...++|+.|++++|.+..+|...+..+++|+.|+++.|.++.+++. .+..+++|
T Consensus 9 ~~~l~~~~~~l~~~p~-----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-----VFDKLTKL 78 (177)
T ss_dssp TTEEECCSSCCSSCCT-----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----TTTTCTTC
T ss_pred CCEEEecCCCCccCCC-----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh-----HccCCCcc
Confidence 3456666666665542 2235777777777777777776667777777777776666554321 12234555
Q ss_pred ceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccCCc-cccCCccEEeeccc
Q 000945 857 KSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVPSS-ASFKNLTTLELWYC 916 (1212)
Q Consensus 857 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c 916 (1212)
+.|+++++. +..++ +..+..+++|++|++++| .++.+|+.. ..+++|+.|+++++
T Consensus 79 ~~L~l~~N~-l~~~~---~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 79 TILYLHENK-LQSLP---NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CEEECCSSC-CCCCC---TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCC-ccccC---HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 555555532 22221 122344455555555544 233444332 33444555555443
No 143
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.45 E-value=4.2e-07 Score=105.54 Aligned_cols=113 Identities=21% Similarity=0.201 Sum_probs=81.2
Q ss_pred ccccchHHHHHHHHHHh-C----C--CCceEEEE--EecCCCchhHHHHHHHHHhhhc---CCCCE-EEEEEecCCCCHH
Q 000945 149 EAFESRKSILNDALDAL-S----N--PNVNVIGL--CGLGGIGKTTLAKIVFYQAKKL---KLCDE-VVFVEVSQTPDVK 215 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L-~----~--~~~~vi~I--~GmgGiGKTTLA~~vyn~~~v~---~~F~~-~~wv~vs~~~~~~ 215 (1212)
..++||+.+++.+.+++ . . .....+-| +|++|+||||||+.+++..... ..|+. .+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 46899999999999888 3 1 23344545 9999999999999999976521 12332 4677666778899
Q ss_pred HHHHHHHHHhcCccc--CCChhHHHHHHHHHHH-cCCcEE-EecCccccc
Q 000945 216 RIQGDIADQLGLYIC--EGSESERAMVLCGLLK-KGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 216 ~l~~~il~~l~~~~~--~~~~~~~~~~l~~~L~-~~kr~L-VLDDVw~~~ 261 (1212)
.+.+.|+.+++.... ..+..+....+.+.+. .+++++ |+||+|...
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 999999999876532 2234455666776665 246888 999998753
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=7.7e-06 Score=93.29 Aligned_cols=127 Identities=9% Similarity=0.007 Sum_probs=75.7
Q ss_pred ccceEeEeecCCccccchHHHhhcCccceeEEEcccee-----EeccccchhhccccccccceEeeCCCccchhhhccCC
Q 000945 801 RNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYK-----EIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDS 875 (1212)
Q Consensus 801 ~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 875 (1212)
.+|+.+.+ .+.+..++...|.++++|+.+++..+.+. .+.. ..+..+++|+.+.+.+ ++..+. .
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----~aF~~c~~L~~l~l~~--~i~~I~---~ 316 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----YCLEGCPKLARFEIPE--SIRILG---Q 316 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----TTTTTCTTCCEECCCT--TCCEEC---T
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-----HHhhCCccCCeEEeCC--ceEEEh---h
Confidence 45666666 33455666666777777777777643332 2221 3345567777777763 345552 3
Q ss_pred CCccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccccccEEEecCc
Q 000945 876 KLDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGC 942 (1212)
Q Consensus 876 ~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 942 (1212)
..+.++++|+.+.+.. +++.++.. +..+ +|+.+++.++ .+..++...+.+.-..++.|++-..
T Consensus 317 ~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 4566778888888854 36666543 3455 8888888874 5555544333222246788888654
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.41 E-value=4e-07 Score=91.28 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=90.3
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEML 853 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l 853 (1212)
+++|+.|++++|.+..+.+ .....+++|++|++++|.+..+|...+..+++|+.|+++.|.++.+++. .+..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG-----VFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTC
T ss_pred CCCCcEEEeCCCcccEeCH--HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH-----HhhCC
Confidence 5789999999999987764 2345789999999999999999988889999999999998888877642 23457
Q ss_pred cccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcc
Q 000945 854 TQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLI 896 (1212)
Q Consensus 854 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~ 896 (1212)
++|+.|+++++ .+..++ +..+..+++|++|++++|+...
T Consensus 100 ~~L~~L~l~~N-~l~~~~---~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVP---DGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSS-CCSCCC---TTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCC-cceEeC---HHHhcCCcccCEEEecCCCeec
Confidence 99999999987 355552 3345778999999999986543
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=4e-07 Score=92.53 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=97.3
Q ss_pred eEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCc
Q 000945 804 KNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITEN 883 (1212)
Q Consensus 804 ~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~ 883 (1212)
+.++++++.+..+|..+ ..+|+.|+++.|.++.+++.. .+..+++|+.|+++++. +..+ .+..+..+++
T Consensus 11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDG----LFGRLPHLVKLELKRNQ-LTGI---EPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSC----SGGGCTTCCEEECCSSC-CCCB---CTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCcc----ccccCCCCCEEECCCCC-CCCc---CHhHcCCccc
Confidence 67899999999999753 348999999988888776421 24458999999999864 3333 3567888999
Q ss_pred ccEEEEecCCCcccccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcc
Q 000945 884 LESLEVWWCENLINLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 884 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 943 (1212)
|++|++++|......|..+..+++|+.|+++++ .++.+++ ..+..+++|+.|++++++
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 999999997544434444778999999999995 6776643 455778899999999887
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.40 E-value=5.3e-08 Score=99.84 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=63.7
Q ss_pred HhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecCCCcccccC
Q 000945 821 LERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWCENLINLVP 900 (1212)
Q Consensus 821 l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 900 (1212)
+..+++|+.|+++.|.++.++ .+..+++|+.|++++|. +..+ |..+..+++|+.|++++| .++.+|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~-l~~l----~~~~~~~~~L~~L~L~~N-~l~~l~- 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNL-IKKI----ENLDAVADTLEELWISYN-QIASLS- 109 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEE-ECSC----SSHHHHHHHCSEEEEEEE-ECCCHH-
T ss_pred HhcCCCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCC-cccc----cchhhcCCcCCEEECcCC-cCCcCC-
Confidence 455555555555544444432 11224555555555542 3333 333445567777777776 444555
Q ss_pred CccccCCccEEeeccccCcccccchhhhcccccccEEEecCcch
Q 000945 901 SSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRM 944 (1212)
Q Consensus 901 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 944 (1212)
.+..+++|+.|++++| .++.++....+..+++|+.|++++|+-
T Consensus 110 ~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4566778888888775 566655334566778888888888863
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.39 E-value=3.7e-07 Score=92.76 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=86.6
Q ss_pred cceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhh
Q 000945 266 KLEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELK 345 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~ 345 (1212)
.++.|++++|.|..+|..+..+.+|++|++++| .+..++.+.|.++.+|++|++++|.+. ......+.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~-----------~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR-----------CIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTT
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccC-----------EeCHHHhC
Confidence 799999999999999999999999999999999 899999888999999999999999986 33345688
Q ss_pred cCCCCCcceeeecccccCCCCc--ccccceEEe
Q 000945 346 LLSHLTTLEIQICDAMILPKGL--FSKKLERYK 376 (1212)
Q Consensus 346 ~l~~L~~L~l~~~~~~~~p~~~--~~~~L~~l~ 376 (1212)
.+.+|+.|+++.|.+..+|.+. .+.+++.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 8999999999999999888864 456666654
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=2.5e-05 Score=88.98 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=25.7
Q ss_pred CccccCcccEEEEecCCCcccccCC-ccccCCccEEeeccccCcccccchhhhcccccccEEEecCc
Q 000945 877 LDSITENLESLEVWWCENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGC 942 (1212)
Q Consensus 877 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 942 (1212)
.+..+++|+.+.+.+ .++.++.. +..+++|+.+.|.. +++.+... .+.++ +|+.+.+.++
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC
Confidence 344445555555542 24444332 23345555555532 34444322 22333 5555555444
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=3e-08 Score=101.73 Aligned_cols=126 Identities=21% Similarity=0.110 Sum_probs=94.0
Q ss_pred ccccccceEeEeecCCccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCC
Q 000945 797 KHIFRNLKNLEVVNDESENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSK 876 (1212)
Q Consensus 797 ~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 876 (1212)
...+++|++|++++|.+..+| .+..+++|+.|+++.|.++.++. .+..+++|+.|++++| .+..++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~------~~~~~~~L~~L~L~~N-~l~~l~----- 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN------LDAVADTLEELWISYN-QIASLS----- 109 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS------HHHHHHHCSEEEEEEE-ECCCHH-----
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc------hhhcCCcCCEEECcCC-cCCcCC-----
Confidence 456889999999998888888 48899999999999778876653 2234689999999987 355552
Q ss_pred CccccCcccEEEEecCCCcccccC--CccccCCccEEeeccccCcccccc---------hhhhcccccccEEE
Q 000945 877 LDSITENLESLEVWWCENLINLVP--SSASFKNLTTLELWYCQRLMNLVT---------SSTAKSLVCLTKLR 938 (1212)
Q Consensus 877 ~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~l~~---------~~~~~~l~~L~~L~ 938 (1212)
.+..+++|+.|++++|. ++.++. .+..+++|+.|++++|+ +...++ ...+..+++|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46788999999999874 454443 56789999999999974 433321 12356677888776
No 151
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=98.30 E-value=3.3e-06 Score=69.43 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=57.7
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHhhcCceEE
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~ 1180 (1212)
|++++.++|. |+|++|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~ 69 (71)
T 2xmw_A 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69 (71)
T ss_dssp -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence 5678889998 9999999999999999999999999999999999755 6788899999998886653
No 152
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=98.29 E-value=6.1e-07 Score=76.63 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=58.0
Q ss_pred cccccccceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCce
Q 000945 1109 SSCSTRTKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1109 ~~~~~~~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1178 (1212)
.+.....+++++++|. |+|..|+.++.+++.+++||.++.+|...++++|.+.+++.++.+.+++.|+.+
T Consensus 14 ~~~~~~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 14 RENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp --------CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred cccccccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 3344445677889997 999999999999999999999999999999999999899999999999988754
No 153
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=98.27 E-value=8.1e-07 Score=71.95 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred EEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEE
Q 000945 1120 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1120 ~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1180 (1212)
.++|. |+|++|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~ 64 (66)
T 2roe_A 3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64 (66)
T ss_dssp CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence 47787 99999999999999999999999999999999997779999999999998886654
No 154
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.23 E-value=2.8e-06 Score=86.68 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=63.6
Q ss_pred ceEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEecCC
Q 000945 1116 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGP 1185 (1212)
Q Consensus 1116 ~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~ 1185 (1212)
..+++++|.|+|+.|+.++.+++.+++||.++.+|...++++|.+.+++.++.+++++.++.+.++..++
T Consensus 5 ~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~ 74 (222)
T 1qup_A 5 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 74 (222)
T ss_dssp CEEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSC
T ss_pred ceEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCC
Confidence 3467788889999999999999999999999999999999999999999999999999999988875443
No 155
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=98.21 E-value=3.6e-06 Score=69.20 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=56.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCce
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1178 (1212)
|+++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 567889997 9999999999999999999999999999999999754 67888999999988754
No 156
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=98.20 E-value=1.3e-06 Score=70.18 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=55.3
Q ss_pred EEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCce
Q 000945 1119 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1119 ~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1178 (1212)
+.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.+.+++..+.+.+++.|+.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 468886 999999999999999999999999999999999998899999999999988754
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.17 E-value=1.3e-06 Score=86.92 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=54.9
Q ss_pred cceeeeccCCccccc-cHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.|++|++++|.|..+ |..|+.+.+|++|+|++| .+..+|.+++.++.+|++|++++|.+. ......+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~-----------~l~~~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK-----------SIPRGAF 101 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTT
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc-----------eeCHHHh
Confidence 566677777776666 446666777777777777 666666665666777777777766664 1112235
Q ss_pred hcCCCCCcceeeecccccCCC
Q 000945 345 KLLSHLTTLEIQICDAMILPK 365 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~~~p~ 365 (1212)
..+.+|++|+++.|.+...+.
T Consensus 102 ~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTCTTCSEEECCSSCBCTTBG
T ss_pred ccccCCCEEEeCCCCcccccc
Confidence 566666666666666554443
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.11 E-value=2e-06 Score=85.28 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=43.9
Q ss_pred cceeeeccCCccccc-cHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhh
Q 000945 266 KLEILSLVDSNIEQL-PEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQEL 344 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~l-p~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L 344 (1212)
.+++|++++|.|..+ |..|+.+.+|++|+|++| .+..+|.+++.++.+|++|++++|.+. ......+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~ 98 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK-----------SIPRGAF 98 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTT
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccC-----------EeCHHHh
Confidence 455555555555555 344555555555555555 455555554555555555555555553 1111234
Q ss_pred hcCCCCCcceeeecccc
Q 000945 345 KLLSHLTTLEIQICDAM 361 (1212)
Q Consensus 345 ~~l~~L~~L~l~~~~~~ 361 (1212)
..+.+|+.|+++.|.+.
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 45555555555555443
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.08 E-value=6.4e-06 Score=93.07 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=72.5
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCC------CHHHHHH
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTP------DVKRIQG 219 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~------~~~~l~~ 219 (1212)
.....++||+.+.+.+.+++..+ .++.|+|++|+|||||++.+++.. . .+|+.+.... +...+.+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 34556899999999999988653 799999999999999999999864 1 5666654332 5566666
Q ss_pred HHHHHhcC---------------cc----cCCChhHHHHHHHHHHHcCCcEE-EecCcccccc
Q 000945 220 DIADQLGL---------------YI----CEGSESERAMVLCGLLKKGKKIL-VLDNIWTSLD 262 (1212)
Q Consensus 220 ~il~~l~~---------------~~----~~~~~~~~~~~l~~~L~~~kr~L-VLDDVw~~~~ 262 (1212)
.+...+.. .. ......+....+.+.....++++ |+||++....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRF 142 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGG
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhc
Confidence 66665532 00 01223344455555554213677 9999987643
No 160
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=98.08 E-value=1.1e-05 Score=66.43 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=57.0
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 46788996 9999999999999999999999999999999999876 5778899999998886644
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.06 E-value=9.8e-06 Score=92.83 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=80.9
Q ss_pred ccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhc----CC--CCEEEEEEecCCC-CHHHH
Q 000945 149 EAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL----KL--CDEVVFVEVSQTP-DVKRI 217 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~----~~--F~~~~wv~vs~~~-~~~~l 217 (1212)
..++||+++++.+.+++. ......+.|+|++|+||||||+.+++...-. .. ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 458899999998887764 3446689999999999999999999976321 11 3456777776666 78888
Q ss_pred HHHHHHHhcCc-c--cCCChhHHHHHHHHHHHcCCcEE-EecCccccc
Q 000945 218 QGDIADQLGLY-I--CEGSESERAMVLCGLLKKGKKIL-VLDNIWTSL 261 (1212)
Q Consensus 218 ~~~il~~l~~~-~--~~~~~~~~~~~l~~~L~~~kr~L-VLDDVw~~~ 261 (1212)
...++.++... . ...+.......+.+.+.. ++.+ ||||++...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~ 146 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhc
Confidence 88988887322 1 122345567777888875 4435 999998753
No 162
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=98.06 E-value=1e-05 Score=66.69 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=57.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
++++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+.+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 356788887 9999999999999999999999999999999999865 5778899999998887654
No 163
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=98.05 E-value=8.7e-06 Score=84.32 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=63.8
Q ss_pred eEEEEEEEecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEEEecCCC
Q 000945 1117 QKAVLKLEIHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATELVSIGPA 1186 (1212)
Q Consensus 1117 ~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~~~~~~~ 1186 (1212)
.+++++|.|+|+.|+.++.+++.+++||.++.+|...++++|.+.+++.++.+++++.++.+.+...+++
T Consensus 7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence 4567888899999999999999999999999999999999999999999999999999999888765544
No 164
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=98.05 E-value=2.1e-05 Score=65.30 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred EEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEEe
Q 000945 1118 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1118 ~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+.+..
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 4678886 9999999999999999999999999999999999865 577889999999998877654
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.03 E-value=1.1e-05 Score=92.45 Aligned_cols=113 Identities=23% Similarity=0.269 Sum_probs=81.4
Q ss_pred ccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhcCC-CCEEEEEEecCCCCHHHHHHHHHH
Q 000945 149 EAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKL-CDEVVFVEVSQTPDVKRIQGDIAD 223 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~-F~~~~wv~vs~~~~~~~l~~~il~ 223 (1212)
..++||+++++.+.+++. ......+.|+|++|+||||||+.+++...-... --..+|+.++...+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999886 345678999999999999999999997652210 124567776666677788888887
Q ss_pred HhcCccc--CCChhHHHHHHHHHHHcC-CcEE-EecCccccc
Q 000945 224 QLGLYIC--EGSESERAMVLCGLLKKG-KKIL-VLDNIWTSL 261 (1212)
Q Consensus 224 ~l~~~~~--~~~~~~~~~~l~~~L~~~-kr~L-VLDDVw~~~ 261 (1212)
.++.... ..+..+....+.+.+... ++.+ |+||++...
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhh
Confidence 7755422 223445566677777642 3667 999998754
No 166
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=98.02 E-value=8.8e-06 Score=69.50 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=58.3
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
.+++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 77 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVK 77 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECS
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEec
Confidence 457789996 9999999999999999999999999999999999875 57888999999988876543
No 167
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=98.02 E-value=2.4e-05 Score=64.65 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=55.5
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEec-CHHHHHHHHHhhcCceE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDI-DAVPVVRKLRKQLCATE 1179 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~-d~~~~~~~l~k~~~~~~ 1179 (1212)
|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+. .+..+.+.+.+.|+.+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~ 67 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR 67 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence 557789998 99999999999999999999999999999999998763 25678888999887553
No 168
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=98.02 E-value=1.5e-05 Score=69.00 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=56.1
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhh---cCceEEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ---LCATELV 1181 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~---~~~~~~~ 1181 (1212)
.++.++|. |+|..|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+.+. ++.|.++
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~ 74 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSIT 74 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECC
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEe
Confidence 35678887 9999999999999999999999999999999999754 6788999999998 3655444
No 169
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=98.02 E-value=1.1e-05 Score=67.44 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=59.1
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
|+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+.++
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 71 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI 71 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEE
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEEC
Confidence 677889997 9999999999999999999999999999999999765 57788999999999877664
No 170
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.00 E-value=4.7e-06 Score=82.56 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=80.8
Q ss_pred ceeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhc
Q 000945 267 LEILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 346 (1212)
Q Consensus 267 Lr~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~ 346 (1212)
.+.++++++.+..+|..+. .+|++|++++| .+..+++..+.++.+|++|++++|.+. ......+..
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLT-----------VLPAGVFDK 76 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC-----------CCCTTTTTT
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcC-----------ccChhhccC
Confidence 4678999999999998774 78999999999 899997777999999999999999986 222344678
Q ss_pred CCCCCcceeeecccccCCCCc--ccccceEEeE
Q 000945 347 LSHLTTLEIQICDAMILPKGL--FSKKLERYKI 377 (1212)
Q Consensus 347 l~~L~~L~l~~~~~~~~p~~~--~~~~L~~l~~ 377 (1212)
+.+|++|+++.|.+..+|.+. .+.+|+.+.+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 999999999999999888763 5667776643
No 171
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=97.99 E-value=2.4e-05 Score=64.28 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred EEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHhhcCceEEEe
Q 000945 1118 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1118 ~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.++.
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 4678887 9999999999999999999999999999999999864 678889999999998887763
No 172
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.97 E-value=5.7e-06 Score=82.22 Aligned_cols=96 Identities=17% Similarity=0.320 Sum_probs=80.0
Q ss_pred eeeeccCCccccccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcC
Q 000945 268 EILSLVDSNIEQLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLL 347 (1212)
Q Consensus 268 r~L~ls~~~i~~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l 347 (1212)
+.++++++.+..+|..+. .+|++|++++| .+..+++..+.++.+|++|++++|.+. ......+..+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLT-----------AIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCC-----------ccChhHhCCc
Confidence 578999999999998775 89999999999 899997777999999999999999985 2222346788
Q ss_pred CCCCcceeeecccccCCCCc--ccccceEEeE
Q 000945 348 SHLTTLEIQICDAMILPKGL--FSKKLERYKI 377 (1212)
Q Consensus 348 ~~L~~L~l~~~~~~~~p~~~--~~~~L~~l~~ 377 (1212)
.+|+.|+++.|.+..+|.+. .+.+|+.+.+
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 99999999999999888863 4667776643
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.96 E-value=3e-05 Score=88.92 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=83.3
Q ss_pred ccccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhc----CCCCEEEEEEecCCCCHHHHHHH
Q 000945 149 EAFESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL----KLCDEVVFVEVSQTPDVKRIQGD 220 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~----~~F~~~~wv~vs~~~~~~~l~~~ 220 (1212)
..++||+.+++.+..++. ......+.|+|++|+||||+|+.+++...-. ..--..+|+.+....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999999884 2456788999999999999999999876421 00123567777777888899999
Q ss_pred HHHHhcCcccC--CChhHHHHHHHHHHHc-CCcEE-EecCccccc
Q 000945 221 IADQLGLYICE--GSESERAMVLCGLLKK-GKKIL-VLDNIWTSL 261 (1212)
Q Consensus 221 il~~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~~ 261 (1212)
|+.+++..... .+..+....+.+.+.. +++.+ ||||++...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhc
Confidence 99998764322 2344556677777753 34666 999998654
No 174
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=97.96 E-value=3e-05 Score=62.94 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=54.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCce
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1178 (1212)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 345678898 9999999999999999999999999999999999754 57788999999887643
No 175
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=97.95 E-value=1.5e-05 Score=65.48 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=52.8
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCceEE
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~~~ 1180 (1212)
|+++++++|. |+|.+|+.++.+++.+++||.++.+|...++++|.++.+ ...+++.|+.+.+
T Consensus 1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~ 63 (71)
T 2aj0_A 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63 (71)
T ss_dssp CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence 5567889998 999999999999999999999999999999999998765 3466777765443
No 176
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.92 E-value=0.00039 Score=79.49 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=19.1
Q ss_pred ccccCCccEEEEecCCCCCccCchhhhccCCCccEEEEc
Q 000945 490 AESFYKLKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVI 528 (1212)
Q Consensus 490 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~ 528 (1212)
+..+.+|+.+.|.. .++.+.. ..+.++.+|+.+++.
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGE-FAFENCSKLEIINIP 102 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECT-TTTTTCTTCCEECCC
T ss_pred hhCCCCceEEEeCC--CccCcch-hHhhCCCCCcEEEeC
Confidence 34455566666542 4555533 335566666666664
No 177
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=1.2e-06 Score=98.90 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=94.6
Q ss_pred cccceeeeeccccccccccccCcc---cccccceEeEeecCCccccch-HHHhhcCccceeEEEccceeEeccccchhhc
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPK---HIFRNLKNLEVVNDESENFRI-GFLERFHNLEKLELRWSSYKEIFSNEEIVEH 849 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~---~~~~~L~~L~l~~~~~~~~p~-~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~ 849 (1212)
.++|+.|++++|.++......... ...++|+.|+|++|.++.... .+...+++|+.|+|+.|.++.... ..+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHH
Confidence 578889999888876543211111 123688899998887765332 223456788888888666643211 111111
Q ss_pred c-ccccccceEeeCCCccchhhhc-cCCCCccccCcccEEEEecCCCcc----cccCCccccCCccEEeeccccCccccc
Q 000945 850 A-EMLTQVKSLKLWELSDLMYIWK-QDSKLDSITENLESLEVWWCENLI----NLVPSSASFKNLTTLELWYCQRLMNLV 923 (1212)
Q Consensus 850 ~-~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~l~ 923 (1212)
+ ...++|++|++++|. +..... ..+..+..+++|++|++++|..-. .++..+...++|+.|++++| .++...
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 1 124678888888874 332110 002233556778888888775321 22333455667888888776 455432
Q ss_pred chh---hhcccccccEEEecCcc
Q 000945 924 TSS---TAKSLVCLTKLRIDGCR 943 (1212)
Q Consensus 924 ~~~---~~~~l~~L~~L~i~~c~ 943 (1212)
... .+...++|++|++++|.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhCCCCCEEeccCCC
Confidence 212 22344677777777775
No 178
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=97.91 E-value=2.2e-05 Score=63.62 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=54.2
Q ss_pred EEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1120 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1120 ~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+++.|+.+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 46776 9999999999999999999999999999999999875 5788899999998887654
No 179
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=97.91 E-value=1.8e-05 Score=66.56 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=58.3
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
.+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+++.|+.+.+.
T Consensus 7 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 76 (79)
T 1kvi_A 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIH 76 (79)
T ss_dssp CEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEEC
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEec
Confidence 456788996 9999999999999999999999999999999999765 57788999999999877654
No 180
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=97.90 E-value=2.6e-05 Score=64.74 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=55.8
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
+++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+.+.|+.+..
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL 71 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence 35678887 9999999999999999999999999999999999876 4567788889998886654
No 181
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=97.86 E-value=2.9e-05 Score=62.45 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=52.4
Q ss_pred EEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHhhcCc
Q 000945 1119 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCA 1177 (1212)
Q Consensus 1119 ~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~ 1177 (1212)
+.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ .++..+.+.+++.|+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 3 ATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp EEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 467776 9999999999999999999999999999999999866 5778889999988764
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.85 E-value=8.2e-05 Score=85.24 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=80.5
Q ss_pred ccccchHHHHHHHHHHhCC----CCce--EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 000945 149 EAFESRKSILNDALDALSN----PNVN--VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIA 222 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~~----~~~~--vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il 222 (1212)
..++||+++++.+..++.. ..-. .+.|+|..|+||||||+.+.+....... -..+|+.++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 4588999999999888863 2223 8999999999999999999997652211 3456777778788889999999
Q ss_pred HHhcCccc--CCChhHHHHHHHHHHHc-CCcEE-EecCcccc
Q 000945 223 DQLGLYIC--EGSESERAMVLCGLLKK-GKKIL-VLDNIWTS 260 (1212)
Q Consensus 223 ~~l~~~~~--~~~~~~~~~~l~~~L~~-~kr~L-VLDDVw~~ 260 (1212)
..++.... ..+..+....+.+.+.. ++..+ ||||++..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 98865432 22344555666666653 24556 99999765
No 183
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=97.85 E-value=3.2e-05 Score=64.34 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=56.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATE 1179 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~ 1179 (1212)
++++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|.-+ +++..+.+.+.+.|+.+.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 72 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV 72 (76)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEE
T ss_pred ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCcee
Confidence 567789998 9999999999999999999999999999999999743 678889999999887653
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.83 E-value=0.00022 Score=81.64 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=15.1
Q ss_pred ccCCccEEeeccccCcccccchhhhcccccccEEEe
Q 000945 904 SFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRI 939 (1212)
Q Consensus 904 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 939 (1212)
.+++|+.+.+.+ +++.++. ..+.++++|+.+.|
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDL 327 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECC
T ss_pred cccccccccccc--ccceech-hhhcCCCCCCEEEe
Confidence 345555555543 3444432 22344455555555
No 185
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=97.83 E-value=5.2e-05 Score=68.52 Aligned_cols=66 Identities=8% Similarity=0.124 Sum_probs=58.3
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
.|++++++|. |+|..|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+++.|+.+..
T Consensus 6 ~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 6 PLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred cceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 3667889997 9999999999999999999999999999999999865 5778899999998886543
No 186
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=97.83 E-value=3.2e-05 Score=62.96 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=53.2
Q ss_pred EEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe--cCHHHHHHHHHhhcCceE
Q 000945 1120 VLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD--IDAVPVVRKLRKQLCATE 1179 (1212)
Q Consensus 1120 ~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~--~d~~~~~~~l~k~~~~~~ 1179 (1212)
.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ .++.++.+.+++.|+.+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~ 65 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKAT 65 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEE
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceE
Confidence 46776 9999999999999999999999999999999999765 577889999999888654
No 187
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=97.80 E-value=6.3e-05 Score=61.44 Aligned_cols=63 Identities=6% Similarity=0.121 Sum_probs=54.9
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCce
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1178 (1212)
++++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+.+.+.+.|+.+
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 68 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 68 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 345678888 9999999999999999999999999999999999754 56788899999888754
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.3e-05 Score=77.83 Aligned_cols=62 Identities=6% Similarity=0.198 Sum_probs=27.4
Q ss_pred cccEEEEecCCCcccc-cCCccccCCccEEeeccccCcccccchhhhcc---cccccEEEecCcchh
Q 000945 883 NLESLEVWWCENLINL-VPSSASFKNLTTLELWYCQRLMNLVTSSTAKS---LVCLTKLRIDGCRML 945 (1212)
Q Consensus 883 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~---l~~L~~L~i~~c~~l 945 (1212)
.|++|++++|. ++.. -..+..+++|+.|++++|..+++-....+... .++|+.|+|++|+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 45555555554 2221 01123455555666666555554321111111 234555555555544
No 189
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=97.79 E-value=1.4e-05 Score=64.68 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=51.8
Q ss_pred EEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEecCHHHHHHHHHhhcCce
Q 000945 1119 AVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGDIDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1119 ~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~~d~~~~~~~l~k~~~~~ 1178 (1212)
+.++|. |+|.+|+.++.+++.++ ||..+.+|...++++|.++.+ .++.+.+++.|+.+
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~ 61 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPV 61 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCC
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCce
Confidence 568885 99999999999999999 999999999999999988765 78889999888754
No 190
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=97.75 E-value=9.3e-05 Score=64.77 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=58.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
|.++.++|. |+|.+|+.++.+++.+++||..+.+|...++++|..+ +++..+...+.+.|+.+.+.
T Consensus 15 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 84 (95)
T 2kkh_A 15 LQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVR 84 (95)
T ss_dssp SEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred eEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEe
Confidence 557789997 9999999999999999999999999999999999865 47788999999988876654
No 191
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.75 E-value=5.6e-06 Score=93.46 Aligned_cols=145 Identities=15% Similarity=0.047 Sum_probs=91.3
Q ss_pred cccceeeeeccccccccccccCcccccccceEeEeecCCccccchHHH-----hhcCccceeEEEccceeEeccccchhh
Q 000945 774 TSKLEELKLSGKDIAMICQSQFPKHIFRNLKNLEVVNDESENFRIGFL-----ERFHNLEKLELRWSSYKEIFSNEEIVE 848 (1212)
Q Consensus 774 l~~L~~L~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l-----~~l~~L~~L~l~c~~l~~~~~~~~~~~ 848 (1212)
.++|++|++++|.+...... .....+++|+.|++++|.++......+ ...++|+.|+|+.|.++... ...+..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~ 177 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-VAVLME 177 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-HHHHHH
T ss_pred CCCceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-HHHHHH
Confidence 36888999988877543211 112346788999999988876554444 23578999999966664321 111122
Q ss_pred ccccccccceEeeCCCccchhhhc-cCCCCccccCcccEEEEecCCCcc----cccCCccccCCccEEeeccccCcccc
Q 000945 849 HAEMLTQVKSLKLWELSDLMYIWK-QDSKLDSITENLESLEVWWCENLI----NLVPSSASFKNLTTLELWYCQRLMNL 922 (1212)
Q Consensus 849 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~l 922 (1212)
.+...++|++|++++|. +..... .....+...++|++|++++|..-. .++..+...++|++|++++| .++..
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 33456889999999875 332110 002345667889999999985432 23333445689999999997 45543
No 192
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=97.74 E-value=7.4e-05 Score=62.87 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=57.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
|.++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++..+.+.+.+.|+.+.+.
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 71 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEec
Confidence 456789998 9999999999999999999999999999999999754 57788999999988876553
No 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.72 E-value=8.7e-05 Score=83.87 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=51.3
Q ss_pred CcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC-----CCHHHHHHHH
Q 000945 147 GYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT-----PDVKRIQGDI 221 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~-----~~~~~l~~~i 221 (1212)
....++||+++.+.+.+ +.. .++.|+|++|+|||||++.+.+... . ..+|+.+... .+...+...+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 44568999999999999 654 6999999999999999999998764 2 2578776542 3444555444
Q ss_pred HHH
Q 000945 222 ADQ 224 (1212)
Q Consensus 222 l~~ 224 (1212)
.+.
T Consensus 82 ~~~ 84 (357)
T 2fna_A 82 QKE 84 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.70 E-value=4.5e-05 Score=85.14 Aligned_cols=62 Identities=24% Similarity=0.215 Sum_probs=30.2
Q ss_pred ccccccceeeccccccc---eeccc--Ccc--cccCcCccEEEEecCCCccccCchhhhhccCCCcEEEecccc
Q 000945 615 VVFPNLETLELCAISTE---KIWCN--QLA--AVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCS 681 (1212)
Q Consensus 615 ~~~~~L~~L~l~~~~l~---~~~~~--~~~--~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 681 (1212)
..+++|+.|.|.+.... -.|.. .+. ...+|+|+.|.|++|..+ .+++ + .+++|++|+|..|.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~---~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK---K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS---C-BCTTCSEEEEECSB
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc---c-cCCCCcEEEEecCC
Confidence 34678888887654211 12321 110 013566666666665332 2222 2 25666666665543
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=2.2e-05 Score=76.34 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=25.0
Q ss_pred cccEEEEecCCCccccc-CCccccCCccEEeeccccCcccc
Q 000945 883 NLESLEVWWCENLINLV-PSSASFKNLTTLELWYCQRLMNL 922 (1212)
Q Consensus 883 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l 922 (1212)
+|++|++++|..+++-- ..+..+++|++|+|++|+.++..
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 56666666666664310 12345677888888888777763
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00023 Score=76.95 Aligned_cols=110 Identities=9% Similarity=0.004 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhhhcCC---CC--EEEEEEecCCCCHHHHHHHH
Q 000945 151 FESRKSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKL---CD--EVVFVEVSQTPDVKRIQGDI 221 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~---F~--~~~wv~vs~~~~~~~l~~~i 221 (1212)
+.||+++.+.|...|. ...-..+-|+|..|.|||++|++|.++...... .. ..+.|......+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999887765 456778899999999999999999998753211 11 24455555677888899999
Q ss_pred HHHhcCcccC-CChhHHHHHHHHHH--HcCCcEE-EecCcccc
Q 000945 222 ADQLGLYICE-GSESERAMVLCGLL--KKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 222 l~~l~~~~~~-~~~~~~~~~l~~~L--~~~kr~L-VLDDVw~~ 260 (1212)
++++...... .........+.+.+ ..++.++ |||++..-
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 9999654211 11222333333333 1236677 99988765
No 197
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.63 E-value=4e-05 Score=86.24 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=77.8
Q ss_pred eeeccCC-ccccccHHHHhhcccccccccC-CCCCcccchhHhhccccCceeecCCCcceeeeeccccCCCccchhhhhc
Q 000945 269 ILSLVDS-NIEQLPEEMAQLTQLRLFDLSG-CSKLKVIPPNLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKL 346 (1212)
Q Consensus 269 ~L~ls~~-~i~~lp~~i~~L~~L~~L~Ls~-~~~l~~lp~~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~ 346 (1212)
.++.+++ .+..+|. |..+.+|++|+|++ | .+..+|.+.|..|.+|++|++++|.+. ...+..|..
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLR-----------FVAPDAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCC-----------EECTTGGGS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccc-----------eeCHHHhcC
Confidence 4577887 8999999 99999999999996 7 899999887999999999999999886 334456889
Q ss_pred CCCCCcceeeecccccCCCCc-ccccceEE
Q 000945 347 LSHLTTLEIQICDAMILPKGL-FSKKLERY 375 (1212)
Q Consensus 347 l~~L~~L~l~~~~~~~~p~~~-~~~~L~~l 375 (1212)
+.+|+.|++++|.+..+|... ....|+.+
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred CcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence 999999999999999888765 22225544
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=0.00011 Score=81.99 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=27.6
Q ss_pred ccccccceeecccc-ccceecccCcccccCcCccEEEEecCCCccccCchhhh--hccCCCcEEEec
Q 000945 615 VVFPNLETLELCAI-STEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMI--RNFVQLEHLEIC 678 (1212)
Q Consensus 615 ~~~~~L~~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l--~~l~~L~~L~l~ 678 (1212)
..+|+|+.|.|+++ .+. + .. ..+++|++|+|..|. +..-.. ..+ ..+|+|++|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l--~~---~~~~~L~~L~L~~~~-l~~~~l-~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-I--GK---KPRPNLKSLEIISGG-LPDSVV-EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-C--CS---CBCTTCSEEEEECSB-CCHHHH-HHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-e--cc---ccCCCCcEEEEecCC-CChHHH-HHHHHccCCCCcEEEEe
Confidence 44567777777666 221 0 11 125667777776553 221100 011 246667776665
No 199
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.00014 Score=73.64 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=41.7
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++||+++++.+.+++.......+-|+|..|+||||+|+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999866667788999999999999999998754
No 200
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.53 E-value=9.9e-05 Score=83.00 Aligned_cols=38 Identities=21% Similarity=0.038 Sum_probs=18.6
Q ss_pred ccccCcccEEEEecCCCcccccCCccccCCccEEeeccc
Q 000945 878 DSITENLESLEVWWCENLINLVPSSASFKNLTTLELWYC 916 (1212)
Q Consensus 878 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 916 (1212)
+..+++|+.|+|++| .++.+|+.......|+.|++.++
T Consensus 76 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp GGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred hcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC
Confidence 344555555555553 34445544333223666666553
No 201
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=97.53 E-value=0.00011 Score=70.88 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
+++.++|. |+|..|+.++.+++.+++||.++.++...++++|.-+ +++.++.+.+++.|+.+.+.
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 142 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 142 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEc
Confidence 46789996 9999999999999999999999999999999999843 78899999999999887653
No 202
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.50 E-value=0.00032 Score=72.99 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++||+..++.+.+++.......+-|+|..|+||||+|+.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 44556889999999999998866555589999999999999999998753
No 203
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.49 E-value=0.00016 Score=69.58 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEE
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATEL 1180 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~ 1180 (1212)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+.+.|+.+.+
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 147 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL 147 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEEC
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEe
Confidence 45789997 9999999999999999999999999999999999765 5788999999999987653
No 204
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=97.39 E-value=0.00038 Score=70.90 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=58.8
Q ss_pred eEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEEe
Q 000945 1117 QKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELVS 1182 (1212)
Q Consensus 1117 ~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~~ 1182 (1212)
+++.++|. |+|.+|+.++.+++.+++||.++.+|...++++|..+ +++.++.+.+++.|+.+.++.
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 191 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC-
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcC
Confidence 56789997 9999999999999999999999999999999999754 578899999999998877653
No 205
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.29 E-value=0.00061 Score=72.06 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=41.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCC-ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSNPN-VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~-~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++||+..++.+..++.... ..++-|+|.+|+||||+|+.+++...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345568999999999999887433 35789999999999999999998765
No 206
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.27 E-value=0.00065 Score=68.18 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=41.6
Q ss_pred cccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++||+.+++.+.+.+.......+-|+|..|+||||+|+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 445889999999999999876666778999999999999999998754
No 207
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=97.24 E-value=0.00063 Score=65.36 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCceEEE
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCATELV 1181 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~~~~ 1181 (1212)
|+++.++|. |+|.+|+.++.+++.+++||.++.++...++++|..+ +++.++.+.+.+.|+.+.++
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 72 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM 72 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEee
Confidence 678899997 9999999999999999999999999999999998764 56788999999988876553
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.22 E-value=0.0008 Score=68.59 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCC----CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC
Q 000945 156 SILNDALDALSNP----NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE 231 (1212)
Q Consensus 156 ~~~~~l~~~L~~~----~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~ 231 (1212)
..++.+.+++... ....|-|+|..|+||||||+++++... ......+|+.++ .+...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhcc----
Confidence 3445555555421 116788999999999999999999876 334455666543 344444332211
Q ss_pred CChhHHHHHHHHHHHcCCcEEEecCcccc
Q 000945 232 GSESERAMVLCGLLKKGKKILVLDNIWTS 260 (1212)
Q Consensus 232 ~~~~~~~~~l~~~L~~~kr~LVLDDVw~~ 260 (1212)
... ..+.+.+.. ..+|||||++..
T Consensus 104 ~~~----~~~~~~~~~-~~~lilDei~~~ 127 (202)
T 2w58_A 104 QTM----NEKLDYIKK-VPVLMLDDLGAE 127 (202)
T ss_dssp CCC----HHHHHHHHH-SSEEEEEEECCC
T ss_pred chH----HHHHHHhcC-CCEEEEcCCCCC
Confidence 111 223445554 556699999764
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.20 E-value=0.00065 Score=67.76 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhCC---CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc
Q 000945 154 RKSILNDALDALSN---PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC 230 (1212)
Q Consensus 154 r~~~~~~l~~~L~~---~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~ 230 (1212)
+...++.+.++..+ ..-..+.|+|..|.||||||+.+++.......+.. .++ +...+...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-~~~------~~~~~~~~~~~~~~~~~- 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-YFF------DTKDLIFRLKHLMDEGK- 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-CEE------EHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-EEE------EHHHHHHHHHHHhcCch-
Confidence 34444445444432 23578999999999999999999998753333322 232 34445555444332211
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEecCccc
Q 000945 231 EGSESERAMVLCGLLKKGKKILVLDNIWT 259 (1212)
Q Consensus 231 ~~~~~~~~~~l~~~L~~~kr~LVLDDVw~ 259 (1212)
.. .+.+.+.+ ..+|||||++.
T Consensus 91 ---~~----~~~~~~~~-~~llilDE~~~ 111 (180)
T 3ec2_A 91 ---DT----KFLKTVLN-SPVLVLDDLGS 111 (180)
T ss_dssp ---CS----HHHHHHHT-CSEEEEETCSS
T ss_pred ---HH----HHHHHhcC-CCEEEEeCCCC
Confidence 11 34455554 77779999984
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.14 E-value=0.033 Score=63.30 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=17.5
Q ss_pred ccEEEEecCCCCCccCchhhhccCCCccEEEEcc
Q 000945 496 LKIIKVRNCDKLKNIFSFSFVRGLPQLQTLNVIN 529 (1212)
Q Consensus 496 L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 529 (1212)
|+.+.|-. .++.+.. ..+.++.+|+.+.+..
T Consensus 66 L~sI~iP~--svt~Ig~-~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 66 LTSVQIPD--TVTEIGS-NAFYNCTSLKRVTIQD 96 (394)
T ss_dssp CCEEEECT--TCCEECT-TTTTTCTTCCEEEEGG
T ss_pred CEEEEECC--CeeEEhH-HHhhCCccCceEeecC
Confidence 66666643 4555533 3456666676666654
No 211
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.01 E-value=0.00072 Score=74.96 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=42.4
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.....++|++..++.+.+++..+....+-|+|++|+||||+|+.+.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34456688999999999999886665558999999999999999999875
No 212
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=96.64 E-value=0.0032 Score=63.97 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=52.7
Q ss_pred cceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhh
Q 000945 1115 TKQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQ 1174 (1212)
Q Consensus 1115 ~~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~ 1174 (1212)
.++++.++|. |+|.+|+.++.+++.+++||.++.++...++++|..+ +++..+.+.+++.
T Consensus 18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889998 9999999999999999999999999999999999865 5678888888886
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.62 E-value=0.028 Score=63.92 Aligned_cols=114 Identities=9% Similarity=0.071 Sum_probs=67.3
Q ss_pred ccccchHHHhhcCccceeEEEccceeEeccccchhhccccccccceEeeCCCccchhhhccCCCCccccCcccEEEEecC
Q 000945 813 SENFRIGFLERFHNLEKLELRWSSYKEIFSNEEIVEHAEMLTQVKSLKLWELSDLMYIWKQDSKLDSITENLESLEVWWC 892 (1212)
Q Consensus 813 ~~~~p~~~l~~l~~L~~L~l~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~~c 892 (1212)
+..+....|.++.+|+.+.+.. .+..+.. ..+..+++|+.+.+.. .+..++ ...+.++++|+.+.|..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~-~~~~I~~-----~aF~~c~~L~~i~l~~--~i~~I~---~~aF~~c~~L~~i~lp~- 320 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPD-SVVSIGT-----GAFMNCPALQDIEFSS--RITELP---ESVFAGCISLKSIDIPE- 320 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCT-TCCEECT-----TTTTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCEEECCT-
T ss_pred ceEcccceeeecccccEEeccc-ccceecC-----cccccccccccccCCC--cccccC---ceeecCCCCcCEEEeCC-
Confidence 3344455567777777776641 1222211 2234467777777653 344442 34556777888888764
Q ss_pred CCcccccCC-ccccCCccEEeeccccCcccccchhhhcccccccEEEecCc
Q 000945 893 ENLINLVPS-SASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGC 942 (1212)
Q Consensus 893 ~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 942 (1212)
.++.+... +..+++|+.+.|-. +++.+.. ..+.++++|+.+++.+.
T Consensus 321 -~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 321 -GITQILDDAFAGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSC
T ss_pred -cccEehHhHhhCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCc
Confidence 35566543 45677888888854 5666643 34567788888888764
No 214
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0016 Score=72.21 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|++..++.+.+++..+....+-|+|..|+||||+|+.+++..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3455688999999999998876666568999999999999999999875
No 215
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0054 Score=66.31 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCCcccccchHHHHHHHHHHhCC-------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSN-------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~-------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......++|.++.++.+.+.+.. ....-+-|+|..|+||||||+++.+...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566788999999888877631 3455688999999999999999998754
No 216
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=96.53 E-value=0.0047 Score=59.28 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=53.3
Q ss_pred ceEEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCc
Q 000945 1116 KQKAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCA 1177 (1212)
Q Consensus 1116 ~~~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~ 1177 (1212)
+++..++|. |+|.+|+.++.+++.+++||..+.++...++++|..+ +++..+.+.+++.++.
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 70 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH 70 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCc
Confidence 456778888 9999999999999999999999999999999888644 5778888888887763
No 217
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.28 E-value=0.0082 Score=65.81 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhC---------------CCCceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 151 FESRKSILNDALDALS---------------NPNVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~---------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
++|.+..++.+.+++. ......|-|+|..|+||||+|+.+.+....
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5666766666655432 234456889999999999999998887653
No 218
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.26 E-value=0.011 Score=67.70 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=41.1
Q ss_pred CCCcccccchHHHH---HHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSIL---NDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~---~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+..+ ..+..++.......+-|||..|+||||+|+.+.+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34456688888777 6677777666778899999999999999999998764
No 219
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.23 E-value=0.22 Score=56.11 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=6.4
Q ss_pred hccCCCcEEEecc
Q 000945 667 RNFVQLEHLEICY 679 (1212)
Q Consensus 667 ~~l~~L~~L~l~~ 679 (1212)
....+|+.+.+..
T Consensus 155 ~~~~~l~~~~~~~ 167 (379)
T 4h09_A 155 YKAENLEKIEVSS 167 (379)
T ss_dssp TTCTTCCEEEECT
T ss_pred ccccccccccccc
Confidence 3445555555543
No 220
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.11 E-value=0.033 Score=60.45 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCcccccchHHHHHHHHHHhCC------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSN------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+.+++.. .....|-|+|..|+||||+|+++.+...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3456688999999888877631 2346788999999999999999998653
No 221
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.96 E-value=0.012 Score=67.50 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCC-ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE--EEEEEecCCCCHHHHHHHHHHHhcCcccCCC
Q 000945 157 ILNDALDALSNPN-VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE--VVFVEVSQTPDVKRIQGDIADQLGLYICEGS 233 (1212)
Q Consensus 157 ~~~~l~~~L~~~~-~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~--~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~ 233 (1212)
....+........ ...+.|+|..|+||||||+++++... ..|.. .+++.. ..+..++...+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~--~~~~~~~v~~v~~------~~~~~~~~~~~~~~----- 182 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG----- 182 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH--HHCCSSCEEEEEH------HHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEeeH------HHHHHHHHHHHHcc-----
Confidence 3344444443322 66789999999999999999999764 22321 233332 23444555544322
Q ss_pred hhHHHHHHHHHHHcCCcEEEecCccccc
Q 000945 234 ESERAMVLCGLLKKGKKILVLDNIWTSL 261 (1212)
Q Consensus 234 ~~~~~~~l~~~L~~~kr~LVLDDVw~~~ 261 (1212)
....+.+.+..+..+|++||++...
T Consensus 183 ---~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 183 ---KLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp ---CHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred ---cHHHHHHHhcCCCCEEEEeCccccc
Confidence 1223444554225677999997653
No 222
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.01 Score=69.86 Aligned_cols=51 Identities=25% Similarity=0.231 Sum_probs=42.5
Q ss_pred cCCCcccccchHHHHHHHHHHhCC-----------------CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 144 CSEGYEAFESRKSILNDALDALSN-----------------PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~~-----------------~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+.....++|++..++.+.+++.. ...+.+-|+|..|+||||+|+.+.+..
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344567789999999999999864 134688999999999999999999876
No 223
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.86 E-value=0.021 Score=60.71 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHHh---CC---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDAL---SN---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L---~~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++|.+..++.+.+++ .. ....-|-|+|..|+||||+|+++.+...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 445677777776665543 21 1234577999999999999999999764
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.86 E-value=0.0081 Score=63.14 Aligned_cols=171 Identities=14% Similarity=0.091 Sum_probs=85.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCC--CCH--HHHHHHHHHHhcCcccCC-------------
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQT--PDV--KRIQGDIADQLGLYICEG------------- 232 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~--~~~--~~l~~~il~~l~~~~~~~------------- 232 (1212)
-.-|.|-+...-.|++|.+.|-+... ..|..+-|-+.... |=+ ...... +....+.....
T Consensus 24 w~kv~I~~g~ky~k~~ll~~i~~~~~--~~f~p~~~~~~~~~~~ffV~~~~~A~~-l~~~~g~i~~~~~~ki~~~v~~~~ 100 (267)
T 3rw6_A 24 WFKITIPYGRKYDKAWLLSMIQSKCS--VPFTPIEFHYENTRAQFFVEDASTASA-LKAVNYKILDRENRRISIIINSSA 100 (267)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHTCS--SCCCCEEEEEETTEEEEEESCHHHHHH-HHHTTSSCBCTTSCBCCCEEEECC
T ss_pred eEEEEecCccccCHHHHHHHHHHhCC--CCcEeEEEEEeCCEEEEEeCChHHHHH-HHhcCcEEECCCCCEEEEEEecCC
Confidence 34566677667778888888866554 55766666543321 111 111112 12222211100
Q ss_pred --------ChhHHHHHHHHHHHcCCcEE------EecCcccccccccccee--eeccCCccccccHHH----Hhhccccc
Q 000945 233 --------SESERAMVLCGLLKKGKKIL------VLDNIWTSLDLDKKLEI--LSLVDSNIEQLPEEM----AQLTQLRL 292 (1212)
Q Consensus 233 --------~~~~~~~~l~~~L~~~kr~L------VLDDVw~~~~~~~~Lr~--L~ls~~~i~~lp~~i----~~L~~L~~ 292 (1212)
-..+..+.|+..+. +||= =|+.+-... .|+. ++++.|....++..+ .++.+|+.
T Consensus 101 ~~~~~~~~l~~~~~~~Lk~~l~--~ryn~~~~~LdLs~l~~dp----~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~ 174 (267)
T 3rw6_A 101 PPHTILNELKPEQVEQLKLIMS--KRYDGSQQALDLKGLRSDP----DLVAQNIDVVLNRRSCMAATLRIIEENIPELLS 174 (267)
T ss_dssp CCHHHHTSCCHHHHHHHHHHHH--HTEETTTTEEECTTGGGCH----HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCE
T ss_pred CcccccccCCHHHHHHHHHHHH--hccchhccccCHHHcCCCc----chhhcCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 01123345555554 4543 333333332 2333 455556544443322 45667777
Q ss_pred ccccCCCCCcccch--hHhhccccCceeecCCCcceeeeeccccCCCccchhhhhcCCCCCcceeeecccc
Q 000945 293 FDLSGCSKLKVIPP--NLLSGLSRLEDLYMGNTSVKWEFEGLNVGRSNASLQELKLLSHLTTLEIQICDAM 361 (1212)
Q Consensus 293 L~Ls~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~w~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 361 (1212)
|+|++| .|..++. ..+..+.+|++|++++|.+.- ...+..+..+ +|+.|.+..|.+.
T Consensus 175 L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~----------~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 175 LNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKS----------ERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp EECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCS----------GGGGGGGTTS-CCSEEECTTSTTG
T ss_pred EECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCC----------chhhhhcccC-CcceEEccCCcCc
Confidence 777777 5665542 235677777777777777640 0112333333 6777777777654
No 225
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.85 E-value=0.028 Score=61.51 Aligned_cols=50 Identities=24% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 145 SEGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
......|.|.++.++.+.+.+. ....+-|-++|..|+||||||+++.+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3445667888888877776552 1123678899999999999999999975
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.85 E-value=0.014 Score=55.51 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEec
Q 000945 162 LDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVS 209 (1212)
Q Consensus 162 ~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs 209 (1212)
+..+..-.-..++|+|..|.||||||+.+++..... .+. .+++...
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~ 73 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAA 73 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETT
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHH
Confidence 344433255689999999999999999999977532 222 4555443
No 227
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.81 E-value=0.024 Score=61.51 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCCcccccchHHHHHHHHHHhCC-------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSN-------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~-------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......+.|.+..++.+.+++.. .....|.|+|..|+||||||+++.+...
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34455678888877777665531 2456789999999999999999999764
No 228
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.015 Score=71.16 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=55.6
Q ss_pred EEEEEEE-ecchhHHHHHHhHhccCCCeeEEEEeCCCCeEEEEEe---cCHHHHHHHHHhhcCce
Q 000945 1118 KAVLKLE-IHGEKARQKAFSIVSKFTGVLSILFDPKDKKMIVIGD---IDAVPVVRKLRKQLCAT 1178 (1212)
Q Consensus 1118 ~~~~~v~-~~c~~c~~~~~~~~~~~~gv~~~~~d~~~~~~~v~g~---~d~~~~~~~l~k~~~~~ 1178 (1212)
++.++|+ |+|.+|+.++.+++.+++||.++.++...++++|.-+ +++.++.+.+++.|+.+
T Consensus 3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~ 67 (723)
T 3j09_A 3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGV 67 (723)
T ss_dssp CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEE
T ss_pred eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcc
Confidence 4678898 9999999999999999999999999999999999754 78999999999988865
No 229
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.76 E-value=0.031 Score=62.37 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+.+++. ......|-|+|..|+||||||+++.+...
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 345568899988888887763 12356788999999999999999998653
No 230
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.51 E-value=0.03 Score=61.70 Aligned_cols=89 Identities=22% Similarity=0.188 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCC--CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccCCC
Q 000945 156 SILNDALDALSNP--NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICEGS 233 (1212)
Q Consensus 156 ~~~~~l~~~L~~~--~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~ 233 (1212)
.....+..+.... ....+-|+|..|+||||||+.+.+..... .+. .+++.. ..+..++...+...
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~-~~~i~~------~~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYR-VIYSSA------DDFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCC-EEEEEH------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCE-EEEEEH------HHHHHHHHHHHHcC-----
Confidence 3344444444432 34678899999999999999999976422 222 233332 23344444433211
Q ss_pred hhHHHHHHHHHHHcCCcEEEecCccccc
Q 000945 234 ESERAMVLCGLLKKGKKILVLDNIWTSL 261 (1212)
Q Consensus 234 ~~~~~~~l~~~L~~~kr~LVLDDVw~~~ 261 (1212)
....+...+.+ ..+|++||+....
T Consensus 88 ---~~~~~~~~~~~-~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 88 ---TINEFRNMYKS-VDLLLLDDVQFLS 111 (324)
T ss_dssp ---CHHHHHHHHHT-CSEEEEECGGGGT
T ss_pred ---cHHHHHHHhcC-CCEEEEcCccccc
Confidence 11223444553 6677999997653
No 231
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.37 E-value=0.01 Score=56.40 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=33.3
Q ss_pred cccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+++|+...++.+.+.+. ..+.. |-|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~-vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIA-VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSC-EEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHHHhC
Confidence 46788888888877664 33344 5699999999999999999864
No 232
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.34 E-value=0.068 Score=58.63 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=41.0
Q ss_pred ccCCCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 143 MCSEGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+......++|.+..++.+.+++. .....-|-++|..|+|||+||+++.+...
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 344556778899999988888772 11235688999999999999999998754
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.33 E-value=0.034 Score=70.03 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......++||+++++.+++.+......-+-++|..|+||||+|+.+.+...
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 344566899999999999998765555678999999999999999998763
No 234
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.29 E-value=0.052 Score=62.41 Aligned_cols=51 Identities=24% Similarity=0.166 Sum_probs=39.8
Q ss_pred cCCCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 144 CSEGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+......|.|.+..++.+.+.+. ....+-|-|+|..|+||||||+++.+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34455668899988888887763 1234678899999999999999999975
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.23 E-value=0.025 Score=59.11 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecC
Q 000945 155 KSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQ 210 (1212)
Q Consensus 155 ~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~ 210 (1212)
...++.+..+........+-|+|..|+||||||+.+.+..... .....|+.++.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 3455555555555456788999999999999999999976532 33456666543
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.20 E-value=0.43 Score=53.61 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=37.1
Q ss_pred ccccceeeccccccceecccCcccccCcCccEEEEecCCCccccCchhhhhccCCCcEEEeccccccceeec
Q 000945 617 FPNLETLELCAISTEKIWCNQLAAVYSQNLTRLIVHGCEKLKYLFPSSMIRNFVQLEHLEICYCSSLESIVG 688 (1212)
Q Consensus 617 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~ 688 (1212)
..+|+.+.|.. +++.+....|. .+.+|+.+.|.. .++.+....+ .+. +|+.+.+- .+++.|+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~--~C~~L~~I~lp~--~v~~Ig~~aF-~~c-~l~~i~~~--~~l~~I~~ 107 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFN--SCYNMTKVTVAS--TVTSIGDGAF-ADT-KLQSYTGM--ERVKKFGD 107 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTT--TCTTCCEEEECT--TCCEECTTTT-TTC-CCCEEEEC--TTCCEECT
T ss_pred ccCCEEEEeCC-CccChHHHHhh--CCCCCCEEEeCC--cceEechhhh-cCC-CCceEECC--ceeeEecc
Confidence 35677777654 34555555554 577888888864 4666655544 344 56666653 34666643
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.18 E-value=0.073 Score=66.26 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=41.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++||+.+++.+++.|......-+-|+|..|+||||+|+.+.+..
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3455689999999999999986555667899999999999999999875
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.15 E-value=0.012 Score=62.78 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=44.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEe--cCCCCHHHHHHHHHHHhcCcccCCChhHHHHHHHHHHHcC
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEV--SQTPDVKRIQGDIADQLGLYICEGSESERAMVLCGLLKKG 248 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~v--s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~L~~~ 248 (1212)
+++-|+|++|+||||||..+..... ..+.|+++ .+..+. ...+.......+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-
Confidence 5677999999999999999877511 23456666 332111 012344556667777776
Q ss_pred CcEEEecCcccc
Q 000945 249 KKILVLDNIWTS 260 (1212)
Q Consensus 249 kr~LVLDDVw~~ 260 (1212)
.+++|+|++-..
T Consensus 183 ~~LLVIDsI~aL 194 (331)
T 2vhj_A 183 HRVIVIDSLKNV 194 (331)
T ss_dssp CSEEEEECCTTT
T ss_pred CCEEEEeccccc
Confidence 453399998754
No 239
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.12 E-value=0.0055 Score=64.39 Aligned_cols=63 Identities=22% Similarity=0.137 Sum_probs=39.5
Q ss_pred ccCcccEEEEecCCCcc--cccCCccccCCccEEeeccccCcccccchhhhcccccccEEEecCcch
Q 000945 880 ITENLESLEVWWCENLI--NLVPSSASFKNLTTLELWYCQRLMNLVTSSTAKSLVCLTKLRIDGCRM 944 (1212)
Q Consensus 880 ~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 944 (1212)
++++|+.|++++|..-. .+|..+..+++|+.|+|++ +.++.+.....+..+ +|++|++++++-
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcC
Confidence 45667777777654322 3444455778888888887 467666322223333 788888888873
No 240
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.09 E-value=0.0059 Score=60.88 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=9.1
Q ss_pred cccccccEEEecCcc
Q 000945 929 KSLVCLTKLRIDGCR 943 (1212)
Q Consensus 929 ~~l~~L~~L~i~~c~ 943 (1212)
...++|++|++++|.
T Consensus 148 ~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHCSSCCEEECCCSS
T ss_pred HhCCCcCEEeccCCC
Confidence 334566777776665
No 241
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.06 E-value=0.091 Score=57.75 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|++..++.+.+++..... .++-+.|..|+||||+|+++.+...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 44566788999999999998875543 5677788899999999999988653
No 242
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.04 E-value=0.082 Score=59.74 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=40.7
Q ss_pred cCCCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+......++|.+..++.+.+++. .....-|-|+|..|+|||+||++|.+...
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 34456678999999999888773 11245788999999999999999987643
No 243
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.02 E-value=0.02 Score=62.94 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|++..++.+.+++..+....+-|+|..|+||||+|+.+.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3455688999999999998886665558999999999999999999875
No 244
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.01 E-value=0.02 Score=66.35 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++||+.+++.++..+......-+-|+|..|+||||+|+.+....
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3455689999999999999875444556799999999999999999875
No 245
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.01 E-value=0.079 Score=58.86 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=37.5
Q ss_pred CCcccccchHHHHHHHHHHhC------------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALS------------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....|+|.+..++.+.+.+. ....+-|-|+|..|+||||||+++.+...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345567888888888877662 01223478999999999999999999764
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.80 E-value=0.016 Score=64.78 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=41.6
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+.....++|+++.++.+..++.......+-|+|..|+||||+|+.+.+..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44456688999999999999886655558999999999999999998874
No 247
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.65 E-value=0.032 Score=56.34 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhCC---CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 154 RKSILNDALDALSN---PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 154 r~~~~~~l~~~L~~---~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|++.++.+.+.+.. ....+|+|.|..|.||||+|+.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566677776653 3567999999999999999999988654
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.55 E-value=0.045 Score=59.39 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhCC---CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc
Q 000945 154 RKSILNDALDALSN---PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC 230 (1212)
Q Consensus 154 r~~~~~~l~~~L~~---~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~ 230 (1212)
+....+.+.+++.. ..-..+-|||..|+|||+||+++.+.......+. +.++.++ .+..++...+.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~-v~~~~~~------~l~~~l~~~~~---- 201 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVS-TTLLHFP------SFAIDVKNAIS---- 201 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCC-EEEEEHH------HHHHHHHCCCC----
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCc-EEEEEHH------HHHHHHHHHhc----
Confidence 33344444455542 1246788999999999999999999765223333 4455443 23333322111
Q ss_pred CCChhHHHHHHHHHHHcCCcEEEecCcccc
Q 000945 231 EGSESERAMVLCGLLKKGKKILVLDNIWTS 260 (1212)
Q Consensus 231 ~~~~~~~~~~l~~~L~~~kr~LVLDDVw~~ 260 (1212)
... ...+...+.+ -.+|||||+...
T Consensus 202 ~~~----~~~~~~~~~~-~~lLiiDdig~~ 226 (308)
T 2qgz_A 202 NGS----VKEEIDAVKN-VPVLILDDIGAE 226 (308)
T ss_dssp --------CCTTHHHHT-SSEEEEETCCC-
T ss_pred cch----HHHHHHHhcC-CCEEEEcCCCCC
Confidence 111 1112334553 566799999543
No 249
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.50 E-value=0.11 Score=55.45 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=32.4
Q ss_pred cccchHHHHHHHHH-------HhC---CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALD-------ALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~-------~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+++|....++.++. .+. .....-+-|+|..|+||||+|+++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 35555555555444 332 34556788999999999999999999743
No 250
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.50 E-value=0.026 Score=63.10 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=39.9
Q ss_pred CCcccccchHHHHHHHHHHh-CCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDAL-SNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L-~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++|++..++.+.+++ ..+....+.|+|..|+||||+|+.+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34556789999999998888 65554459999999999999999998853
No 251
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.48 E-value=0.024 Score=62.44 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|++..++.+..++. ......|-|+|..|+||||+|+++.+...
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 34568899988888877764 22345688999999999999999998664
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.47 E-value=0.17 Score=52.74 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=54.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhcCcc----------cCCCh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKRIQGDIADQLGLYI----------CEGSE 234 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~----------~~~~~ 234 (1212)
.-.++.|+|..|.||||||+.+........ .-..++|+.....++..++. ++++.++... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999987533211 23578888777766665543 3444454321 11122
Q ss_pred hH---HHHHHHHHHHcCCcEE-EecCcccc
Q 000945 235 SE---RAMVLCGLLKKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 235 ~~---~~~~l~~~L~~~kr~L-VLDDVw~~ 260 (1212)
.+ ....+.+.+...+--+ |+|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 22 2333555554323334 99988755
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.38 E-value=0.14 Score=55.03 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-.+|+|+|.+|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999876653
No 254
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.32 E-value=0.036 Score=61.51 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=40.1
Q ss_pred CCcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|++..++.+..++. ......|-|+|..|+||||+|+++.+...
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 356678999999988888775 23445688999999999999999987653
No 255
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.17 E-value=0.091 Score=53.85 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=34.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQG 219 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~ 219 (1212)
.-.++.|+|.+|.||||||+.+.. .. =..++|+.....++..++.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH
Confidence 346899999999999999999987 21 24678887766667666543
No 256
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.15 E-value=0.022 Score=56.66 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=50.3
Q ss_pred cceeeeccCCcccc-----ccHHHHhhcccccccccCCCCCcc-----cchhHhhccccCceeec--CCCcceeeeeccc
Q 000945 266 KLEILSLVDSNIEQ-----LPEEMAQLTQLRLFDLSGCSKLKV-----IPPNLLSGLSRLEDLYM--GNTSVKWEFEGLN 333 (1212)
Q Consensus 266 ~Lr~L~ls~~~i~~-----lp~~i~~L~~L~~L~Ls~~~~l~~-----lp~~~i~~L~~L~~L~l--~~~~~~w~~~~~~ 333 (1212)
.|++|++++|.|.. +...+.....|++|+|++| .+.. +... +.....|++|++ ++|.+.-...
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~--- 140 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE--- 140 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH---
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH---
Confidence 57777777776652 3445555567777777777 5543 2222 455667777777 6666541110
Q ss_pred cCCCccchhhhhcCCCCCcceeeeccc
Q 000945 334 VGRSNASLQELKLLSHLTTLEIQICDA 360 (1212)
Q Consensus 334 ~~~~~~~~~~L~~l~~L~~L~l~~~~~ 360 (1212)
......+.....|+.|++++|.+
T Consensus 141 ----~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 141 ----MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ----HHHHHHHHHCSSCCEEECCCSSH
T ss_pred ----HHHHHHHHhCCCcCEEeccCCCC
Confidence 12334455556677777776654
No 257
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.09 E-value=0.049 Score=61.35 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHHhCCCC-ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDALDALSNPN-VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~~~L~~~~-~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++|++..++.+..++..+. -..+-|+|..|+||||+|+.+.+...
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4458899999999998887443 35678999999999999999988764
No 258
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.02 E-value=0.045 Score=60.67 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=41.5
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+..++.+..++..+.+.-+.++|..|+||||+|+.+.+...
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 445566789888888888888766655589999999999999999988753
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.95 E-value=0.059 Score=54.74 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=30.9
Q ss_pred HHHHHHHHhCC--CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 157 ILNDALDALSN--PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 157 ~~~~l~~~L~~--~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+.|.+.+.. ..-.+|+|+|..|.|||||++.+..-..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566666552 4568999999999999999999988765
No 260
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.92 E-value=0.17 Score=55.51 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~ 242 (1212)
.-.++.|+|..|+||||||..+........ ..++|+.....++.. .++.++.... ..+..+....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 346999999999999999999988755222 346788777667654 4555554422 133444445555
Q ss_pred HHHHcC-CcEEEecCcccc
Q 000945 243 GLLKKG-KKILVLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~-kr~LVLDDVw~~ 260 (1212)
..++.+ -.++|+|.+-..
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 444432 344499987544
No 261
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.84 E-value=3.2 Score=46.93 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
..++|.|+|.||+||||+|-.+-.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999998876653
No 262
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.84 E-value=0.075 Score=58.05 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHhCCC---------CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALSNP---------NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~~~---------~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|.+..++.+...+... ....+.|+|..|+||||+|+.+.+...
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 567787777777666421 245899999999999999999999764
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.82 E-value=0.028 Score=55.39 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.9
Q ss_pred eEEEEEecCCCchhHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIV 190 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~v 190 (1212)
.+|.|.|+.|.||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.72 E-value=0.068 Score=57.96 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhC----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 155 KSILNDALDALS----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 155 ~~~~~~l~~~L~----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.-++.+++.+. .+....|.|+|+.|.||||+|+.+.....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344555555543 45677799999999999999999988765
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.56 E-value=0.056 Score=57.12 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCcccccchHHHHHHHHHH---hCC---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDA---LSN---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~---L~~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+.++ +.. ....-|.|+|..|.||||||+++.+...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3455677777777665543 321 1123478999999999999999998764
No 266
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.54 E-value=0.04 Score=60.75 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=36.4
Q ss_pred CCcccccchHHHHHHHHHHhC-----CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALS-----NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~-----~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....++|.+..++.+-..+. ......+.|+|..|+||||||+.+.+...
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345556787766666544443 22446799999999999999999999764
No 267
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.43 E-value=0.075 Score=56.50 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=32.9
Q ss_pred CcccccchHHHHHHHHHHhC----C----------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDALS----N----------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~----~----------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....|.|.++.++.+.+.+. . -... +.++|..|.||||||+.+.+...
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 34456777777777665443 1 1122 99999999999999999999765
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.38 E-value=0.043 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.36 E-value=4.1 Score=43.36 Aligned_cols=26 Identities=46% Similarity=0.469 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+|+|+|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999887665
No 270
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.32 E-value=0.024 Score=53.60 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=31.3
Q ss_pred cccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++|++..++.+.+.+. ..+.. |-|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~-vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSP-VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSC-EEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCc-EEEECCCCccHHHHHHHHHHhC
Confidence 46677777777777654 33333 5699999999999999998743
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.30 E-value=0.29 Score=53.84 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=56.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhcCccc----------CCCh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC----------EGSE 234 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~----------~~~~ 234 (1212)
.-.++-|+|..|+||||||..+........ .=..++|+.....|+..++.. ++..++.+.. ..+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 456899999999999999999887643211 235788998888888777654 4455544321 1112
Q ss_pred h---HHHHHHHHHHHc--CCcEE-EecCcccc
Q 000945 235 S---ERAMVLCGLLKK--GKKIL-VLDNIWTS 260 (1212)
Q Consensus 235 ~---~~~~~l~~~L~~--~kr~L-VLDDVw~~ 260 (1212)
. +....+.+.+.. .+-=+ |+|.+-..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2 233344555543 23335 99987644
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.27 E-value=0.043 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-.+|+|+|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 273
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.26 E-value=0.07 Score=59.97 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=37.2
Q ss_pred cccccchHHHHHH---HHHHhCCCCc--eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILND---ALDALSNPNV--NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~---l~~~L~~~~~--~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++|++..++. +.+.+..... ..+-|+|..|+||||+|+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5568898887665 4555544433 5889999999999999999999875
No 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.22 E-value=0.071 Score=66.25 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=41.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 146 EGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.....++||+.+++.++..+......-+-++|..|+||||+|+.+.+..
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999875444557799999999999999999875
No 275
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.19 E-value=0.23 Score=54.24 Aligned_cols=91 Identities=23% Similarity=0.224 Sum_probs=56.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCC----CCEEEEEEecCCCCHHHHHHHHHHHhcCccc----------CCCh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKL----CDEVVFVEVSQTPDVKRIQGDIADQLGLYIC----------EGSE 234 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~----------~~~~ 234 (1212)
.-.++-|+|..|+||||||..+......... =..++|+.....|+..++.+ +++.++.+.. ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999998765432110 24788998888888777653 4555544321 1122
Q ss_pred h---HHHHHHHHHHHc-CCcEE-EecCcccc
Q 000945 235 S---ERAMVLCGLLKK-GKKIL-VLDNIWTS 260 (1212)
Q Consensus 235 ~---~~~~~l~~~L~~-~kr~L-VLDDVw~~ 260 (1212)
. +....+...++. .+--+ |+|.+-..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 2 234455555543 23344 99987544
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.17 E-value=0.048 Score=54.94 Aligned_cols=27 Identities=37% Similarity=0.336 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|.|+|+.|.||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 277
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.12 E-value=0.31 Score=54.86 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=65.5
Q ss_pred HHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCc------c--
Q 000945 160 DALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLY------I-- 229 (1212)
Q Consensus 160 ~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~------~-- 229 (1212)
++++.+.- ..=..++|+|..|+|||||++.+-+... +.+-+.++++-|.+..+ +..+.+++.+.=..+ .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 45666652 2345789999999999999999988653 24567888888888765 567777777642221 0
Q ss_pred --cCCChh---------HHHHHHHHHHHc--CCcEE-EecCccccc
Q 000945 230 --CEGSES---------ERAMVLCGLLKK--GKKIL-VLDNIWTSL 261 (1212)
Q Consensus 230 --~~~~~~---------~~~~~l~~~L~~--~kr~L-VLDDVw~~~ 261 (1212)
....++ ...-.+-++++. |+.+| ++||+-.-.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A 266 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 266 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 011111 123334555554 79999 999986543
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.07 E-value=0.05 Score=53.76 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|+|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998854
No 279
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.04 E-value=0.19 Score=58.09 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=37.7
Q ss_pred CcccccchHHHHHHHHHHhC-------------CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 147 GYEAFESRKSILNDALDALS-------------NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L~-------------~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
....+.|.+..++.+.+++. -....-|-|+|..|+|||++|+++.+..
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 44568899988888877664 1233458899999999999999998865
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.91 E-value=3.9 Score=46.00 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...||.|+|.+|+||||++..+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887665
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.87 E-value=0.058 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+-....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988653
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.86 E-value=0.087 Score=54.32 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.+-+.+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444445678999999999999999999887653
No 283
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.80 E-value=0.06 Score=57.19 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=32.2
Q ss_pred ccccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 149 EAFESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 149 ~~i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..++|++..+..+.+.+. ... .-|-|+|..|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~-~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLD-KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSC-SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCC-CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 446788777777766553 333 4566999999999999999998643
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.76 E-value=0.049 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|+|+|+.|.||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988654
No 285
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.72 E-value=0.07 Score=54.81 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 153 SRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 153 gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+..+..+.+.+.+......+|.|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344455555554445788999999999999999999887653
No 286
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.66 E-value=0.14 Score=53.86 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.|+|..|+||||||+.+.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.55 E-value=0.078 Score=51.06 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+.+|+|+|..|.|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999998765
No 288
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.53 E-value=0.28 Score=55.40 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=65.3
Q ss_pred HHHHhC-CCCceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCc--------c-
Q 000945 161 ALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLY--------I- 229 (1212)
Q Consensus 161 l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~--------~- 229 (1212)
+++.|. =..-..++|+|-.|+|||||++.+-+... +.+-+.++++-|.+..+ +..+.+++.+.=..+ .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 455554 12345689999999999999999988753 14568899998888775 567777776531111 0
Q ss_pred --cC-CCh--------hHHHHHHHHHHHc--CCcEE-EecCccccc
Q 000945 230 --CE-GSE--------SERAMVLCGLLKK--GKKIL-VLDNIWTSL 261 (1212)
Q Consensus 230 --~~-~~~--------~~~~~~l~~~L~~--~kr~L-VLDDVw~~~ 261 (1212)
.. .++ -...-.+-+++++ |+.+| ++||+-.-.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A 279 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFV 279 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 00 111 1123445566665 79999 999987553
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.48 E-value=0.074 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.46 E-value=0.069 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|+|..|.|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.44 E-value=0.071 Score=53.75 Aligned_cols=28 Identities=36% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..-.+|.|+|+.|.||||+|+.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999988765
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.37 E-value=0.074 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...|.|+|+.|+||||+|+.+-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 293
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.36 E-value=0.64 Score=49.33 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC------CChhHHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE------GSESERAMVLCGLL 245 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~------~~~~~~~~~l~~~L 245 (1212)
++-|+|..|+||||||-.+.........=..++||..-..++..+ ++.++.+.+. .+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 689999999999999877765544211124678888877777643 6777765432 23333313344444
Q ss_pred ---HcCCcEE-EecCcccc
Q 000945 246 ---KKGKKIL-VLDNIWTS 260 (1212)
Q Consensus 246 ---~~~kr~L-VLDDVw~~ 260 (1212)
+.++--+ |+|-|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3334455 99988655
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.35 E-value=0.084 Score=57.58 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhCC--------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALSN--------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~--------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|++..++.+...+.. ....-+-|+|..|+||||+|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367888888888766642 1234567999999999999999998763
No 295
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.35 E-value=0.075 Score=48.97 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=46.3
Q ss_pred eeeccCCccc--cccHHHHhhcccccccccCCCCCcccchhHhhccccCceeecCCCcc
Q 000945 269 ILSLVDSNIE--QLPEEMAQLTQLRLFDLSGCSKLKVIPPNLLSGLSRLEDLYMGNTSV 325 (1212)
Q Consensus 269 ~L~ls~~~i~--~lp~~i~~L~~L~~L~Ls~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 325 (1212)
+++.+++.++ .+|..+. .+|++|+|++| .|..||.++|..+.+|+.|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5677888888 8886543 36899999999 89999999999999999999999865
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.33 E-value=0.075 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.+|.|.|+.|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.32 E-value=0.074 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|+|+|+.|.||||+|+.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998765
No 298
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.30 E-value=0.052 Score=57.78 Aligned_cols=23 Identities=48% Similarity=0.479 Sum_probs=21.0
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000945 173 IGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 173 i~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|-|+|..|+||||||+++.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 66999999999999999999765
No 299
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.22 E-value=0.064 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|.|+.|.||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 300
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.21 E-value=0.36 Score=53.10 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC------CChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE------GSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~------~~~~~~~~~l~ 242 (1212)
.-.++.|+|..|+||||||..+....... =..++|+.....++.. .++.++..... .+..+....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35689999999999999999987655422 2457888887777654 24455543221 23333333333
Q ss_pred HHHHcC-CcEEEecCcccc
Q 000945 243 GLLKKG-KKILVLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~~-kr~LVLDDVw~~ 260 (1212)
...... -+++|+|.+-..
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 333222 345599987644
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.21 E-value=0.079 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.+|+|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.19 E-value=0.077 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.+|+|.|+.|.||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.18 E-value=0.062 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.17 E-value=0.49 Score=51.65 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=41.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC---------CC-----CEEEEEEecCCCCHHHHHHHHHHHhcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK---------LC-----DEVVFVEVSQTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~---------~F-----~~~~wv~vs~~~~~~~l~~~il~~l~~ 227 (1212)
.-.++-|+|..|+||||||..+.-...... .. ..++|+.....|+..++.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 346899999999999999998876532211 11 4678888888888887764 4555544
No 305
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.16 E-value=0.081 Score=51.52 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|+|.|+.|.||||+|+.+-....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 306
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.14 E-value=0.076 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|+|+|..|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998753
No 307
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.08 E-value=0.37 Score=53.03 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=51.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCcccC------CChhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYICE------GSESERAMVLC 242 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~------~~~~~~~~~l~ 242 (1212)
.-.++-|.|.+|+||||||..+....... =..++|+.....++... +..++.+... .+..+....++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999998887665422 23688888877777542 4455443211 12233333333
Q ss_pred HHHHc-CCcEEEecCcccc
Q 000945 243 GLLKK-GKKILVLDNIWTS 260 (1212)
Q Consensus 243 ~~L~~-~kr~LVLDDVw~~ 260 (1212)
...+. +-+++|+|.+-..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 32222 2345599987543
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.07 E-value=0.092 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988754
No 309
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.07 E-value=0.077 Score=57.45 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCceEEEEEecCCCchhHHHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
++.+||+|.|=|||||||.|-.+--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3679999999999999999976644
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.04 E-value=0.071 Score=52.64 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|+|+.|.||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998765
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.00 E-value=0.084 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|.|.|+.|.||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988664
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.95 E-value=0.089 Score=53.56 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|+|+|..|.|||||++.+..-..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988644
No 313
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.93 E-value=0.2 Score=53.57 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCCcccccchHHHHHHHHHHhC---C----------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALS---N----------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~---~----------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......++|.++.++++.+... . -... |.|+|..|.||||||+.+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHcC
Confidence 3445566777666555443321 1 0122 89999999999999999998764
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.90 E-value=0.093 Score=53.22 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998763
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.88 E-value=0.17 Score=54.01 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+|+|+|..|.||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999887655
No 316
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.87 E-value=0.38 Score=53.82 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=39.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhcC
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKRIQGDIADQLGL 227 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 227 (1212)
.-.++.|+|..|+|||||+..+.-...... .-..++|+.....++..++.. +++.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcCC
Confidence 346899999999999999997653322111 235688888777777666543 5666654
No 317
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.82 E-value=0.1 Score=51.80 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|.|+|+.|.||||+|+.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998765
No 318
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.80 E-value=0.33 Score=54.84 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=53.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCC-HHHHHHHHHHHhcCc-------ccCCChhH------
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPD-VKRIQGDIADQLGLY-------ICEGSESE------ 236 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~-------~~~~~~~~------ 236 (1212)
..++|+|..|+||||||+.+-...... +-+.++++-+.+... +..+.+++.+.=..+ .-.+.-..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999998876532 335667777776653 445555554320000 00011100
Q ss_pred HHHHHHHHHH--cCCcEE-EecCcccc
Q 000945 237 RAMVLCGLLK--KGKKIL-VLDNIWTS 260 (1212)
Q Consensus 237 ~~~~l~~~L~--~~kr~L-VLDDVw~~ 260 (1212)
..-.+.+++. +||++| ++||+-.-
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1123445554 379999 99998644
No 319
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.79 E-value=0.63 Score=52.41 Aligned_cols=27 Identities=41% Similarity=0.375 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|.++|.+|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999887665
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.79 E-value=0.073 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++++|+|..|.|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998654
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.73 E-value=0.09 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998754
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.68 E-value=0.094 Score=54.08 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|+|+|+.|.||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 323
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.67 E-value=0.96 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
++.+|+|+|..|+|||||.+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5778999999999999999998764
No 324
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.63 E-value=0.1 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
....+|+|.|+.|.||||+|+.+-..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999774
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.62 E-value=0.099 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988654
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.53 E-value=0.086 Score=53.30 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|.|+|+.|+||||+++.+-...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998764
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.52 E-value=0.11 Score=49.64 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|.-|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998854
No 328
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.52 E-value=0.088 Score=53.33 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.0
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.+|+|.|+.|.||||+++.+-.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999955
No 329
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.45 E-value=0.1 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.43 E-value=0.11 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
..+|.|.|+.|.||||+|+.+-..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 331
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.40 E-value=0.087 Score=52.91 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+++|+|..|.|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 332
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.40 E-value=0.098 Score=56.59 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|||+|..|.|||||++.+..-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 567999999999999999999998765
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.37 E-value=0.094 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+-....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.30 E-value=0.12 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+|.|.|+.|.||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.23 E-value=0.13 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|+|.|+.|.||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.20 E-value=0.13 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|+|+.|.||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999987653
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.11 E-value=0.11 Score=57.68 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+...++|.+..++.+..........-|-|+|..|+||||+|+.+.+...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334556888887666544443332233478999999999999999998653
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.04 E-value=0.12 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 339
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.02 E-value=0.12 Score=54.06 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|+|+|+.|.|||||++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999997543
No 340
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.01 E-value=0.6 Score=51.54 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=51.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhcCccc------CCChhHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQLGLYIC------EGSESERAMVLCG 243 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~~~~l~~ 243 (1212)
-.++-|.|.+|+||||||..+-...... =..++|+.....++... ++.++.+.. ..+..+....+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4578889999999999998877654422 24688998887776542 445554322 1233344444443
Q ss_pred HHHcC-CcEEEecCcccc
Q 000945 244 LLKKG-KKILVLDNIWTS 260 (1212)
Q Consensus 244 ~L~~~-kr~LVLDDVw~~ 260 (1212)
.++.+ -.++|+|.+-..
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 33322 344599987543
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.98 E-value=0.13 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-++|.|+|..|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.93 E-value=0.13 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|.|.|+.|.||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.93 E-value=0.13 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|.|+.|.||||+|+.+....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999988754
No 344
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.93 E-value=0.14 Score=55.40 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHhC---CCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALS---NPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~---~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
+++|+...+..+.+.+. ..+. -|-|+|..|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~-~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDA-TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTS-CEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCC-cEEEECCCCchHHHHHHHHHHhC
Confidence 46788777777777664 3333 45699999999999999999864
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.91 E-value=0.1 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|.|.|+.|.||||+|+.+-....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987654
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.90 E-value=0.13 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|.|.|+.|.||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.90 E-value=0.14 Score=50.83 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.+|+|.|+.|.||||+|+.+-..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998775
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.90 E-value=0.11 Score=54.55 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|+|+|+.|.||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446999999999999999999997654
No 349
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.90 E-value=0.28 Score=53.40 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=36.4
Q ss_pred HHHHHhC-CCCceEEEEEecCCCchhHHHHHHHHHhhhc-CCCCEEEEEEecCCCC
Q 000945 160 DALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFYQAKKL-KLCDEVVFVEVSQTPD 213 (1212)
Q Consensus 160 ~l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F~~~~wv~vs~~~~ 213 (1212)
++++.+. -..-..++|+|..|+|||||++.+-+....+ ..++ ++++-|.+...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH
Confidence 4566655 2345689999999999999999998765432 2333 34567776653
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.80 E-value=0.082 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
..+|+|+|..|.|||||++.+..-...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 368999999999999999999886653
No 351
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.24 Score=55.71 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=40.7
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|-++.++.|.+.+. . ...+=|-++|++|.|||+||++|.+...
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 45566778899998888876643 1 2345678999999999999999999876
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.79 E-value=0.14 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|.|+.|.||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.78 E-value=0.14 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|+|.|+.|.||||+|+.+-....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999987543
No 354
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.77 E-value=0.12 Score=51.17 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+++|+|..|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.74 E-value=0.14 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|+|.|+.|.||||+|+.+.....
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.70 E-value=0.11 Score=53.07 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998854
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.66 E-value=0.15 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|.|+.|.||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.59 E-value=0.12 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+-....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.53 E-value=0.15 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=22.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+.....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 360
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.25 Score=55.51 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=39.9
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|-++.++.|.+.+. . ...+=|-++|++|.|||+||++|-+...
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44556678888888888776553 1 1344578999999999999999999875
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.50 E-value=0.14 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|||.|..|.||||||+.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998753
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.50 E-value=0.16 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..+|.|.|+.|.||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.41 E-value=0.15 Score=50.93 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|+|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 364
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.31 Score=54.90 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=39.4
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|......|.|-++.++.|.+.+. . ...+=|-++|+.|.|||+||++|.+...
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34456677888888877766543 1 2345678999999999999999999876
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.28 E-value=0.17 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-.+|+|+|.+|+||||+++.+..-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999887653
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.28 E-value=0.13 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987644
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.21 E-value=0.16 Score=51.81 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999998654
No 368
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.19 E-value=0.25 Score=61.32 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.1
Q ss_pred CCcccccchHHHHHHHHHHhCC-------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 146 EGYEAFESRKSILNDALDALSN-------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 146 ~~~~~i~gr~~~~~~l~~~L~~-------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.....+.|.+..++.+.+++.- ..-..|.|+|..|+||||||+++.+...
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3445677887777777666531 2345689999999999999999988643
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.18 E-value=0.26 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|||.|..|.||||+|+.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999977554
No 370
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.27 Score=55.22 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=39.1
Q ss_pred CCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
......|.|.++.++.|.+.+. . ...+=|-++|..|.|||+||++|.+...
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3445568888888888776543 1 2455677999999999999999999876
No 371
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.13 E-value=0.26 Score=55.04 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhC-------------C--CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALS-------------N--PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~-------------~--~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|.+..++.+...+. . .....|-++|..|+||||+|+++.+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888777662 1 1235688999999999999999998763
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.13 E-value=0.17 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+|.|.|+.|.||||+|+.+.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999998765
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.10 E-value=0.19 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.+++|+|..|.|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998654
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.09 E-value=0.5 Score=48.56 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=33.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcC----CCCEEEEEEecCCCCHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLK----LCDEVVFVEVSQTPDVKR 216 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~----~F~~~~wv~vs~~~~~~~ 216 (1212)
.-.+++|+|..|.|||||++.+........ .-...+|+.-...+...+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 346899999999999999999987543211 234577776555444433
No 375
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.03 E-value=0.19 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+-++|..|+|||+||++|.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999874
No 376
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.26 Score=54.56 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=39.7
Q ss_pred ccCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 143 MCSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|......|.|.++.+++|.+.+. . ...+=|-++|++|.|||+||++|.+...
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 345566778888888877766543 1 1234577999999999999999999876
No 377
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.00 E-value=0.14 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+|+|+||.|.||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988654
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.98 E-value=0.18 Score=49.65 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+|+|.|+.|.||||+|+.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999988654
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.92 E-value=0.26 Score=55.37 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..|-++|..|+||||+|+.+.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999865
No 380
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.86 E-value=0.29 Score=54.30 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 158 LNDALDALS--NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 158 ~~~l~~~L~--~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+++.+. .....+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555554 45788999999999999999999876643
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.83 E-value=0.18 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCchhHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVF 191 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vy 191 (1212)
...+|+|.|+.|.||||+|+.+-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999997
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.64 E-value=0.18 Score=54.15 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=30.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
.-.+++|+|..|+||||+++.+..-.... ...+++.-.+.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRA 141 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccch
Confidence 34699999999999999999999876532 34444443444554
No 383
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.63 E-value=0.16 Score=55.91 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|+++.++.+...+... .-+-++|..|+||||||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678888888887777643 3577899999999999999988653
No 384
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.62 E-value=0.17 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-.+++|+|..|.|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999876
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.60 E-value=0.19 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.|+|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998753
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.56 E-value=0.2 Score=50.79 Aligned_cols=27 Identities=37% Similarity=0.230 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|.|.|+.|.||||+|+.+.....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446899999999999999999988654
No 387
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.46 E-value=0.2 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...|.|.|+.|.||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998754
No 388
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.36 Score=53.61 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=39.7
Q ss_pred cCCCcccccchHHHHHHHHHHhC----C---------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 144 CSEGYEAFESRKSILNDALDALS----N---------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 144 ~~~~~~~i~gr~~~~~~l~~~L~----~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+......|.|.++.+++|.+.+. . ...+=|-++|+.|.|||+||++|-+...
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 45556677888888877766543 1 2345688999999999999999999876
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.45 E-value=0.21 Score=50.80 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=26.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE 202 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~ 202 (1212)
-.+|.|.|+.|.||||+|+.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 358999999999999999999887553 35665
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.42 E-value=0.12 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|+|+|..|.||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999988764
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.41 E-value=0.19 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
. .+++|+|..|.|||||.+.+..-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 5 799999999999999999998754
No 392
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=89.40 E-value=1.7 Score=36.01 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=46.8
Q ss_pred ceEEEEEEEecchhHHHHHHhHhccCCCeeEEEE-----eCCCC--eEEEEEe-cCHHHHHHHHHhhcC
Q 000945 1116 KQKAVLKLEIHGEKARQKAFSIVSKFTGVLSILF-----DPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1176 (1212)
Q Consensus 1116 ~~~~~~~v~~~c~~c~~~~~~~~~~~~gv~~~~~-----d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1176 (1212)
.+++||-|--.-+--.-...+.+++++||+.|.+ |.+.. |+||.|+ +|-.++.+++.+.|+
T Consensus 6 iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg 74 (100)
T 3bpd_A 6 LRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG 74 (100)
T ss_dssp EEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4577777775444445667778899999988765 33333 7999999 999999999999887
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.40 E-value=0.17 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.+|+|.|+.|.||||+|+.+-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999965
No 394
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.40 E-value=0.17 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|+|+.|+|||||++.+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47799999999999999998764
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.33 E-value=0.21 Score=50.83 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=25.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE 202 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~ 202 (1212)
-.+|.|.|+.|.||||+|+.+...... ..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 358999999999999999999987642 34555
No 396
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.32 E-value=0.41 Score=54.78 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=34.5
Q ss_pred CcccccchHHHHHHHHHHh---CCC---------CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDAL---SNP---------NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~L---~~~---------~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+.|.++.++++.+.. ... -.+-|-|+|..|.||||||++|.+...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455777777766655443 221 123377999999999999999999764
No 397
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.30 E-value=0.19 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998744
No 398
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.27 E-value=0.2 Score=54.36 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|||.|..|.|||||++.+..-..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999988643
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.21 E-value=0.18 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998744
No 400
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.20 E-value=1.5 Score=49.18 Aligned_cols=27 Identities=41% Similarity=0.364 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|.|+|.+|+||||++..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999988765
No 401
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.19 E-value=0.35 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+|-|.|+.|.||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 402
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.12 E-value=0.22 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.145 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..|.|.|+.|.||||+|+.+.....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999987653
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.04 E-value=0.23 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|+|.|+.|+||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998754
No 404
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.04 E-value=0.46 Score=51.60 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.-.+|+|+|..|+||||+++.+..-.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999887653
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.00 E-value=0.22 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|.|+.|.||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997754
No 406
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.95 E-value=0.72 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAKK 196 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~v 196 (1212)
.|.|-|.-|.||||.++.+++..+-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998763
No 407
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.92 E-value=0.19 Score=58.05 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 150 AFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|++..++.+...+..+ .-|-|+|..|+|||+||+++.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3778888888877766532 3567999999999999999998653
No 408
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.87 E-value=1.4 Score=47.32 Aligned_cols=89 Identities=13% Similarity=0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhhh-c-CCCCEEEEEEecC-CCCHHHHHHHHHHHhcCcccC
Q 000945 155 KSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAKK-L-KLCDEVVFVEVSQ-TPDVKRIQGDIADQLGLYICE 231 (1212)
Q Consensus 155 ~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~v-~-~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~ 231 (1212)
++.++.+.+.+..+.....-++|..|.||||+|+.+-+.... . .+.|. .++..+. ..++..+ +++++.+.....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccc-
Confidence 444566666666556778889999999999999999774211 1 24444 3343332 3343333 345554432211
Q ss_pred CChhHHHHHHHHHHHcCCcEEEecCcccc
Q 000945 232 GSESERAMVLCGLLKKGKKILVLDNIWTS 260 (1212)
Q Consensus 232 ~~~~~~~~~l~~~L~~~kr~LVLDDVw~~ 260 (1212)
..++|++|+|++..-
T Consensus 80 --------------~~~~kvviIdead~l 94 (305)
T 2gno_A 80 --------------LYTRKYVIVHDCERM 94 (305)
T ss_dssp --------------SSSSEEEEETTGGGB
T ss_pred --------------cCCceEEEeccHHHh
Confidence 113566699988754
No 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.83 E-value=0.2 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 410
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.80 E-value=0.7 Score=51.69 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=61.4
Q ss_pred HHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhcCCCC----EEEEEEecCCCC-HHHHHHHHHHHhcCc-----
Q 000945 160 DALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCD----EVVFVEVSQTPD-VKRIQGDIADQLGLY----- 228 (1212)
Q Consensus 160 ~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~----~~~wv~vs~~~~-~~~l~~~il~~l~~~----- 228 (1212)
+.++.+.. ..=..++|.|..|+|||||+..|-+.... +-+ .++++-+-+..+ +..+.+++.+.=..+
T Consensus 140 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 140 SAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred eEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 45565551 22334789999999999999999987663 335 777888877654 556666655431111
Q ss_pred --ccCCChh------HHHHHHHHHHHc--CCcEE-EecCcccc
Q 000945 229 --ICEGSES------ERAMVLCGLLKK--GKKIL-VLDNIWTS 260 (1212)
Q Consensus 229 --~~~~~~~------~~~~~l~~~L~~--~kr~L-VLDDVw~~ 260 (1212)
...+... ...-.+-++++. |+.+| ++||+-.-
T Consensus 218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 0011111 122345666763 79999 99998753
No 411
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.78 E-value=0.24 Score=49.33 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.|+|+|..|+|||||.+.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988753
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.78 E-value=0.24 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+|+|.|+.|.||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987653
No 413
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.70 E-value=0.24 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|+|.|+.|.||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997654
No 414
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.65 E-value=0.38 Score=55.43 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred cccccchHHHHHHHH---HHhCCC--CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 148 YEAFESRKSILNDAL---DALSNP--NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 148 ~~~i~gr~~~~~~l~---~~L~~~--~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+++|.++.++.+. +++..+ ..+-+-++|..|+||||+|+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 356788888877544 444332 224678999999999999999999764
No 415
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.60 E-value=1.5 Score=48.01 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 155 KSILNDALDALSNPNV-NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 155 ~~~~~~l~~~L~~~~~-~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.+..+.+.+.+..+.+ +.+-++|..|+||||+|+.+-+...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4556667777665554 4688999999999999999988653
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.55 E-value=0.15 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=16.4
Q ss_pred ceEEEEEecCCCchhHHHHHHH-HHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVF-YQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vy-n~~ 194 (1212)
-.+|+|+|..|.|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 643
No 417
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.55 E-value=2.9 Score=47.78 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhHHHHhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCcceeccccCCCcccc
Q 000945 63 EQSVEKWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTKPEGILL 142 (1212)
Q Consensus 63 ~~~v~~Wl~~lk~~~~~aed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~ 142 (1212)
...++.|..++.++.-.+|-.+|--+ . . ....+..+..++.++.++++.+....
T Consensus 162 ~~~~~~~r~~l~~~~a~iEa~iDf~e-d-~--------~~~~~~~~~~~i~~l~~~l~~~~~~~---------------- 215 (462)
T 3geh_A 162 AHPIRQLRANCLDILAEIEARIDFEE-D-L--------PPLDDEAIISDIENIAAEISQLLATK---------------- 215 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSS-S-S--------CCCCTTTHHHHHHHHHHHHHHHTTTH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-c-C--------ChhhHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 56788999999988877777776211 0 0 01122345667777777777664430
Q ss_pred ccCCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 143 MCSEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 143 ~~~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
. ....++ ..+ .|+|+|..|+|||||...+.+..
T Consensus 216 ------------~--~~~~~r----~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 216 ------------D--KGELLR----TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ------------H--HHHHHH----HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ------------h--hhhhhc----CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0 011121 133 38999999999999999988764
No 418
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.55 E-value=0.25 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+|+|.|+.|.||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987543
No 419
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.54 E-value=0.21 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998744
No 420
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.48 E-value=0.48 Score=54.64 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=33.8
Q ss_pred CcccccchHHHHHHHHHH---hCCC---------CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 147 GYEAFESRKSILNDALDA---LSNP---------NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 147 ~~~~i~gr~~~~~~l~~~---L~~~---------~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....+.|.++.++++.+. +.+. --+=|.|+|..|.||||||++|.+...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 445567777766555443 3221 012388999999999999999998764
No 421
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.43 E-value=0.22 Score=52.35 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+++|+|..|.|||||++.+..-.. -....+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 346899999999999999999987543 22345544
No 422
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.43 E-value=0.25 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|.|+.|.||||+|+.+-...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998754
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.39 E-value=0.25 Score=54.26 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=30.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
-.+|+|+|..|+||||+++.+..-.... ...+.+.-.+.|+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRA 198 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEeccccccc
Confidence 4699999999999999999999876532 23444433444554
No 424
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.37 E-value=0.22 Score=52.17 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
.-.+++|+|..|.|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999884
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.36 E-value=0.24 Score=51.72 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCchhHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 426
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.24 E-value=0.25 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 167 NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 167 ~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
....++|+|+|-||+||||+|-.+-.-..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH
Confidence 44678999999999999999988766443
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.22 E-value=0.34 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|.|+|+.|.||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998754
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.21 E-value=0.24 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.18 E-value=0.26 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999876554
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.15 E-value=0.2 Score=50.61 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||++.+..-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 431
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.10 E-value=0.24 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||.+.+..-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 432
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.09 E-value=0.24 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999998754
No 433
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.06 E-value=0.25 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.+++|+|..|.|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999984
No 434
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.05 E-value=0.29 Score=55.63 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=30.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDV 214 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~ 214 (1212)
.-.+|+|+|..|+|||||++.+..-.+.. ...+++.-.+.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccch
Confidence 35699999999999999999998876532 34455543444543
No 435
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.05 E-value=0.24 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998744
No 436
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.94 E-value=12 Score=41.12 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.....|+|+|..|+|||||...+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998764
No 437
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.92 E-value=0.28 Score=50.26 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...|.|.|+.|.||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988654
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.90 E-value=0.26 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998744
No 439
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.86 E-value=0.25 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||.+.+..-..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987543
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.77 E-value=0.26 Score=51.27 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=25.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
-.+++|+|..|.|||||++.+..-.. .....+++
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i 68 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLI 68 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 45899999999999999999987543 22445554
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.76 E-value=0.31 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..|.|.|+.|.||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 442
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.73 E-value=0.3 Score=52.50 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|.|+|.+|+||||++..+.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999988765
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.71 E-value=0.3 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|.|+.|.||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.68 E-value=0.26 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 445
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.65 E-value=0.32 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|.|+.|.||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 446
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.62 E-value=1.6 Score=47.53 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=35.3
Q ss_pred HHHHHhCC-CCceEEEEEecCCCchhHHHHHHHHHhhhc-CCCCEEEEEEecCC
Q 000945 160 DALDALSN-PNVNVIGLCGLGGIGKTTLAKIVFYQAKKL-KLCDEVVFVEVSQT 211 (1212)
Q Consensus 160 ~l~~~L~~-~~~~vi~I~GmgGiGKTTLA~~vyn~~~v~-~~F~~~~wv~vs~~ 211 (1212)
.+++.+.- ..-..++|+|..|+|||||++.|-+....+ ..+. ++++-|.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 56777762 344578999999999999999999876532 2233 245655544
No 447
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.60 E-value=0.27 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999998743
No 448
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.55 E-value=0.34 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
..|.|+|.+|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998864
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.55 E-value=0.28 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998753
No 450
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.53 E-value=0.3 Score=58.63 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=38.8
Q ss_pred CCCcccccchHHHHHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 145 SEGYEAFESRKSILNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 145 ~~~~~~i~gr~~~~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
+.....++|.+..++.+...+..+ ..+.|+|..|+||||||+.+.+-..
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344567889888777776666544 5889999999999999999998654
No 451
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.51 E-value=0.3 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|+|.|-||+||||+|-.+-.-..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 47899999999999999988776443
No 452
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.50 E-value=0.29 Score=52.47 Aligned_cols=27 Identities=41% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+|+|+|.+|+||||++..+..-..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999988765
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.50 E-value=0.28 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||++.+..-..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35899999999999999999987543
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.43 E-value=0.31 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCchhHHHHHHHHH
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.43 E-value=0.28 Score=51.87 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
.-.+++|+|..|.|||||++.+..-.. -....+++
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEE
Confidence 346899999999999999999987543 22445554
No 456
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.39 E-value=0.31 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.++|+|..|.|||||.+.+++-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999764
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.37 E-value=0.3 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|+|.|-||+||||+|-.+-.-..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH
Confidence 6889999999999999988876554
No 458
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.28 E-value=0.29 Score=53.06 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...+|+|+|.+|+||||++..+..-..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887665
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.23 E-value=0.29 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998744
No 460
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.22 E-value=0.31 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999998855
No 461
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.17 E-value=0.48 Score=55.77 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHhC------CCCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALS------NPNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~------~~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
++|.++.++.+.+.+. +..-.++.++|..|+||||||+.+.+...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5666666665544332 23456899999999999999999998764
No 462
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.10 E-value=0.29 Score=51.83 Aligned_cols=27 Identities=37% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345899999999999999999987543
No 463
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.08 E-value=0.29 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.+++|+|..|.|||||.+.+..-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 464
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.04 E-value=0.35 Score=50.29 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|.|.|+.|.||||+|+.+-+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 465
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.03 E-value=0.34 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.|.|+|.+|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998753
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.02 E-value=0.41 Score=48.39 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..+||-|.|+.|.||||.|+.+..+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999988654
No 467
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.99 E-value=0.59 Score=47.91 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCE
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDE 202 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~ 202 (1212)
.-.+|.|.|+.|.||||+++.+.+.... .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence 3468999999999999999999998763 4554
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.83 E-value=0.74 Score=50.68 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=34.3
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCC----CEEEEEEecCCCCHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLC----DEVVFVEVSQTPDVKRI 217 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F----~~~~wv~vs~~~~~~~l 217 (1212)
.-.++.|+|..|.|||||++.+.......... ..++|+.-...+...++
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i 182 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI 182 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH
Confidence 45799999999999999999998765211111 24588877666654443
No 469
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.79 E-value=0.3 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn 192 (1212)
-|.|+|.+|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999876
No 470
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.75 E-value=0.38 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=21.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.+|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998754
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.68 E-value=0.34 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.--|.|+|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999998887753
No 472
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.66 E-value=0.34 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
-.|.|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998753
No 473
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.63 E-value=0.38 Score=50.48 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.+++|+|..|.|||||++.+..-..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 457999999999999999999987654
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.61 E-value=0.38 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.024 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
...|.|.|+.|.||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988654
No 475
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=86.38 E-value=3 Score=34.35 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=43.7
Q ss_pred eEEEEEEEec-chhHHHHHHhHhccCCCeeEEEE-----eCCCC--eEEEEEe-cCHHHHHHHHHhhcC
Q 000945 1117 QKAVLKLEIH-GEKARQKAFSIVSKFTGVLSILF-----DPKDK--KMIVIGD-IDAVPVVRKLRKQLC 1176 (1212)
Q Consensus 1117 ~~~~~~v~~~-c~~c~~~~~~~~~~~~gv~~~~~-----d~~~~--~~~v~g~-~d~~~~~~~l~k~~~ 1176 (1212)
+++||-|--. -+--.-..-+.+++++||+.|.+ |.+.. ++||.|+ +|-.++.+++.+.|+
T Consensus 5 rRlVLDVlKP~h~P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg 73 (96)
T 2x3d_A 5 RRLVLDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC 73 (96)
T ss_dssp EEEEEEEEEESSSSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEEEEcccCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4566766533 23334456677899999988765 33333 7999999 999999999999887
No 476
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.29 E-value=0.4 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|+|.|+.|.||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 477
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.20 E-value=0.57 Score=46.00 Aligned_cols=26 Identities=38% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHH
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.....|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999988753
No 478
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.17 E-value=0.38 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-.|.|+|.+|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998874
No 479
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.13 E-value=0.28 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.+|+|.|.-|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998774
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.07 E-value=0.29 Score=52.36 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=19.7
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
...+|+|.|..|.||||+|+.+-+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998753
No 481
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.99 E-value=2.2 Score=53.46 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhCC---------CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 150 AFESRKSILNDALDALSN---------PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 150 ~i~gr~~~~~~l~~~L~~---------~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.++|.+..++.+...+.. .....+-|+|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888888887766541 123578899999999999999999875
No 482
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.99 E-value=0.42 Score=53.87 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHHhCC--------------CCceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 151 FESRKSILNDALDALSN--------------PNVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 151 i~gr~~~~~~l~~~L~~--------------~~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
|+|.++.++.+...+.. ...+-|-++|+.|+||||+|+.+.....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 66777777776555421 1234588999999999999999998764
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.95 E-value=0.4 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCCchhHHHHHHHHHh
Q 000945 168 PNVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 168 ~~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..-.+|+|+|..|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999753
No 484
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.87 E-value=0.37 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
..|+|+|..|+|||||.+.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.82 E-value=0.38 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.68 E-value=0.4 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.6
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-.+++|+|..|.|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.52 E-value=0.29 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.0
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.-.+++|+|..|.|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4568999999999999999998764
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.49 E-value=0.38 Score=47.48 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
..-+-|+|.+|.||||+|.++.+..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999988753
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.46 E-value=0.46 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.541 Sum_probs=20.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.+.+|+|..|.|||||+++|+--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 490
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=85.41 E-value=0.66 Score=46.34 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=23.9
Q ss_pred HHHHhC-CCCceEEEEEecCCCchhHHHHHHHH
Q 000945 161 ALDALS-NPNVNVIGLCGLGGIGKTTLAKIVFY 192 (1212)
Q Consensus 161 l~~~L~-~~~~~vi~I~GmgGiGKTTLA~~vyn 192 (1212)
+++.+. ......|+|+|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 455543 33445689999999999999998764
No 491
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.34 E-value=0.41 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
-.+++|+|..|.|||||++.+.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999986554
No 492
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.29 E-value=0.45 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHHHHHH
Q 000945 172 VIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 172 vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
-|.|+|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998874
No 493
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.27 E-value=0.41 Score=51.00 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhh
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAK 195 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~ 195 (1212)
.-.++.|+|..|.||||||..+.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999887544
No 494
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.24 E-value=4.3 Score=43.80 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=36.5
Q ss_pred CceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFVEVSQTPDVKRIQGDIADQ 224 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv~vs~~~~~~~l~~~il~~ 224 (1212)
.-.++-|.|.+|+||||+|..+......+. ..++|++. +-....+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~sl--E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSL--EMGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEEC--CCCHHHHHHHHHHH
Confidence 346888999999999999998876554332 55666543 45666777666654
No 495
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.08 E-value=0.48 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
--|.|+|.+|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998774
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.05 E-value=0.5 Score=47.54 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCceEEEEEecCCCchhHHHHHHHHH
Q 000945 158 LNDALDALSNPNVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 158 ~~~l~~~L~~~~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
.+.+-++......-.|.|+|..|+|||||...+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333434444445567899999999999999888764
No 497
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.01 E-value=1.3 Score=45.26 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=28.0
Q ss_pred ceEEEEEecCCCchhHHHHHHHHHhhhcCCCCEEEEE
Q 000945 170 VNVIGLCGLGGIGKTTLAKIVFYQAKKLKLCDEVVFV 206 (1212)
Q Consensus 170 ~~vi~I~GmgGiGKTTLA~~vyn~~~v~~~F~~~~wv 206 (1212)
-..|.|.|..|.||||+++.+...... ..+......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 358999999999999999999988763 456634433
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.01 E-value=0.54 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
..|.|.|.-|.||||+|+.+....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999865
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.01 E-value=0.47 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000945 171 NVIGLCGLGGIGKTTLAKIVFYQA 194 (1212)
Q Consensus 171 ~vi~I~GmgGiGKTTLA~~vyn~~ 194 (1212)
.-|.|+|..|+|||||.+.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999988753
No 500
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.00 E-value=0.5 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCchhHHHHHHHHH
Q 000945 169 NVNVIGLCGLGGIGKTTLAKIVFYQ 193 (1212)
Q Consensus 169 ~~~vi~I~GmgGiGKTTLA~~vyn~ 193 (1212)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999998874
Done!