Query 000946
Match_columns 1212
No_of_seqs 199 out of 317
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 02:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 60.2 3.5 0.00012 50.9 2.4 130 586-730 224-361 (802)
2 1ich_A TNF-1, tumor necrosis f 32.2 18 0.0006 35.3 1.8 81 392-472 11-103 (112)
3 2ysr_A DEP domain-containing p 15.3 36 0.0012 32.4 0.2 30 110-139 9-38 (105)
4 3mkq_B Coatomer subunit alpha; 11.6 1.9E+02 0.0064 30.0 4.3 45 154-200 16-63 (177)
5 1t8h_A YLMD protein sequence h 11.5 74 0.0025 35.0 1.3 22 692-722 28-50 (277)
6 3onk_A Epsin-3, ENT3; helix, p 10.8 3.6E+02 0.012 27.3 5.9 74 173-256 49-131 (150)
7 1l6x_B Minimized B-domain of p 10.8 41 0.0014 26.7 -0.7 24 607-630 1-24 (34)
8 3mzk_B Protein transport prote 9.7 1.1E+03 0.038 27.5 10.4 63 153-216 160-238 (441)
9 2lp4_A Chemotaxis protein CHEA 9.3 1.1E+03 0.036 24.6 9.2 89 184-276 7-99 (225)
10 3kyj_A CHEA3, putative histidi 9.2 1.1E+03 0.039 23.0 8.8 80 191-274 21-101 (144)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=60.20 E-value=3.5 Score=50.92 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCCccCccchhhhccccccccccCCc---cchHHHHHhhhhhHHHHhhcCCCCCceeecccceeeccc-----chhhccc
Q 000946 586 EGKPENQNHAVIFTRGNAIQTIDMNQ---DNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS-----VSSLAYF 657 (1212)
Q Consensus 586 EGKpeNQNHAiIFtRGE~lQtIDmNQ---DnYlEEaLKmRNlL~EF~~~~g~~p~tIlG~REhIFTgs-----vssLa~f 657 (1212)
.||+.|-|+++=-++||++-++|.+- .++++ .+++.++++. .+.+++.+-++..++ .+.....
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~------~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~ 294 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHVPSRDFLA------RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRC 294 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHH------HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTS
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCCCcChHHHH------HHHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhh
Confidence 48999999999999999999999853 33443 4555675543 345555544444432 2222222
Q ss_pred cccchhhHHHhhhHhhcccccccccccCCcccccccccccCcccccccccccchhhhhhhhhhccCceeeeee
Q 000946 658 MSNQETSFVTLGQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHE 730 (1212)
Q Consensus 658 ~a~qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLSEDIFaG~N~~lRgG~I~h~E 730 (1212)
. ..+..|-...++.... .+...--|+-=++.|.....-||... -.++||..-++-...+|.++.++.
T Consensus 295 ~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 295 P-PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp C-CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECC
T ss_pred h-HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEec
Confidence 2 2233444444444432 22223345555566665556677764 346899999999888888887664
No 2
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=32.22 E-value=18 Score=35.34 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=53.5
Q ss_pred CCccHHHHHHhhCc-hhhhhHHhhhCCCCCCccccccCCc-----hhhHhhhhhhhccc------chhhhcccccccHHH
Q 000946 392 DGISILFYLQKIYP-DEWKNFLSRIGRDENSQDTELFDSP-----SDILELRFWASYRA------QTLARTVRGMMYYRK 459 (1212)
Q Consensus 392 dgvsiL~YL~~i~P-dEW~NFler~~~~~~~~~~~~~~~~-----~~~~elRlWAS~Rg------QTL~RTVrGmM~Y~~ 459 (1212)
+.-.+|+.+-...| .+|+.|++++|..+.+-+.-..+.| ..-.=||.|----| +||..+.+-|=.-.-
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHHH
Confidence 45567777777777 8999999999976543322111112 23445899998876 888888888877778
Q ss_pred HHHHHHHhhcCCC
Q 000946 460 ALMLQAYLERMTS 472 (1212)
Q Consensus 460 ALkll~~lE~~~~ 472 (1212)
|-+++..++.+..
T Consensus 91 ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 91 LEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHhcccc
Confidence 8888887777654
No 3
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.33 E-value=36 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=25.7
Q ss_pred cchhhHHHHHhhccccccCchhhhhhhccC
Q 000946 110 RFSPFWNEIIKNLREEDYITNLEMELLLMP 139 (1212)
Q Consensus 110 rFa~~WNeiI~sfReeDlisdrE~~lL~~p 139 (1212)
|-..+|||||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred hHHHHHHHHHHHHHcCCCcceeeeCCEECC
Confidence 334699999999999999999988777777
No 4
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=11.62 E-value=1.9e+02 Score=30.04 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=32.9
Q ss_pred HhhcchHHHHHHHHHhccChHHHHHHhccChhHH---HHHHHHHHHHHHH
Q 000946 154 LLASKIFYAKDIAVENRDSQDELWERISRDEYMK---YAVEEFYHTLKFI 200 (1212)
Q Consensus 154 Lla~ki~~Ald~a~~~~~~~~~l~~~i~~d~y~~---~Av~e~y~s~k~i 200 (1212)
|-+|.+..|+++|++. ++...|+++.+.--.. .=+++||..++++
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 5568899999999876 5688999987533221 1259999988764
No 5
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=11.54 E-value=74 Score=35.05 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=14.2
Q ss_pred cccccc-Ccccccccccccchhhhhhhhhhcc
Q 000946 692 VFHITR-GGISKASRVINISEDIYAGFNTTLR 722 (1212)
Q Consensus 692 ~F~~TR-GGvSKAsk~inLSEDIFaG~N~~lR 722 (1212)
.+++|| ||||++ .|+++|.-+.
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~ 50 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLH 50 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSS
T ss_pred EEEEcCCCCccCC---------cccceeccCC
Confidence 345666 888776 4777775544
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=10.82 E-value=3.6e+02 Score=27.28 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=43.2
Q ss_pred hHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcccccceeccC------CchhHHH
Q 000946 173 QDELWERISRD---EYMKYAVEEFYHTLKFILTETLEAEGRMWVERIYDDINVSVEKRSIHVDFQLT------KLPLVIS 243 (1212)
Q Consensus 173 ~~~l~~~i~~d---~y~~~Av~e~y~s~k~il~~ll~~~~~~~i~~i~~~i~~~i~~~~~~~~f~l~------~Lp~l~~ 243 (1212)
-.-||+|+... ++ +-+|.++- +|.-|+.+..++.|..+-+.+.. |+ -+.+|+.. .=-.+++
T Consensus 49 m~~l~kRL~d~~~k~W-----R~vyKaL~-lLeyLl~nGse~vv~~~r~~~~~-i~---~L~~F~~~d~~G~D~G~~VR~ 118 (150)
T 3onk_A 49 LSMIFRRFTEKAGSEW-----RQIYKALQ-LLDYLIKHGSERFIDDTRNSINL-IR---ILETFHYIDSQGRDQGINVRT 118 (150)
T ss_dssp HHHHHHHHHSCCSTTH-----HHHHHHHH-HHHHHHHHSCHHHHHHHHTTHHH-HH---GGGGCCCBCTTSCBCHHHHHH
T ss_pred HHHHHHHHcccccchH-----HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH-HH---hhhcccccCCCCCchHHHHHH
Confidence 36789999754 34 55666663 45566655444555554222221 22 13445442 2248899
Q ss_pred HHHHHHHHhhccC
Q 000946 244 RVTALMGVLKEAE 256 (1212)
Q Consensus 244 ~~~~L~~~L~~~~ 256 (1212)
|.-+|+++|.+++
T Consensus 119 kak~l~~LL~D~e 131 (150)
T 3onk_A 119 RVKALIELLSDDN 131 (150)
T ss_dssp HHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCHH
Confidence 9999999888754
No 7
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=10.78 E-value=41 Score=26.67 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=20.0
Q ss_pred ccCCccchHHHHHhhhhhHHHHhh
Q 000946 607 IDMNQDNYFEEALKMRNLLEEFHA 630 (1212)
Q Consensus 607 IDmNQDnYlEEaLKmRNlL~EF~~ 630 (1212)
+|+-|.|-|=|.|+|.||-+|=..
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQrn 24 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQRN 24 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHH
Confidence 467789999999999999887553
No 8
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=9.75 E-value=1.1e+03 Score=27.45 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=42.1
Q ss_pred hHhhcchHHHHHHHHHhcc----------ChHHHHHHhccChhHHHHHHH------HHHHHHHHHHHhcccchhhHHHHH
Q 000946 153 FLLASKIFYAKDIAVENRD----------SQDELWERISRDEYMKYAVEE------FYHTLKFILTETLEAEGRMWVERI 216 (1212)
Q Consensus 153 FLla~ki~~Ald~a~~~~~----------~~~~l~~~i~~d~y~~~Av~e------~y~s~k~il~~ll~~~~~~~i~~i 216 (1212)
.|+.|+...|++.|.+.+. -+.++|++..+ +|.+.-+.. .....-.+|..++.++-.+.|+.+
T Consensus 160 ~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~-~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~~V~~l 238 (441)
T 3mzk_B 160 FLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQ-KYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKMAIKSF 238 (441)
T ss_dssp HHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH-HHHHCC------CTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHHH-HHHHhhcccCCccccccccHHHHHHHHHcCCHHHHHHHh
Confidence 8999999999999999772 46778888776 565422211 111233477788888877766654
No 9
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=9.34 E-value=1.1e+03 Score=24.58 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc---c-cchhhHHHHHHHHHHHHHhcccccceeccCCchhHHHHHHHHHHHhhccCCch
Q 000946 184 EYMKYAVEEFYHTLKFILTETL---E-AEGRMWVERIYDDINVSVEKRSIHVDFQLTKLPLVISRVTALMGVLKEAETPV 259 (1212)
Q Consensus 184 ~y~~~Av~e~y~s~k~il~~ll---~-~~~~~~i~~i~~~i~~~i~~~~~~~~f~l~~Lp~l~~~~~~L~~~L~~~~~~~ 259 (1212)
+++..=+.||-+.+..+=..|+ . +++...++.||+.+...--... .|.+..+-.+..++.++++.+.+... .
T Consensus 7 ~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~---~~g~~~i~~laH~~E~~l~~~r~g~~-~ 82 (225)
T 2lp4_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAG---TFGFTILQETTHLMENLLDEARRGEM-Q 82 (225)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHH---hcCHHHHHHHHHHHHHHHHHHHcCCC-C
Confidence 4555556677666655544444 2 2367789999987665433333 36788899999999999999887652 2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 000946 260 LQKGAVQAVQDLYDVVR 276 (1212)
Q Consensus 260 ~~~~~v~~lq~l~e~v~ 276 (1212)
....++..|..-.+.+.
T Consensus 83 ~~~~~~~ll~~~~D~l~ 99 (225)
T 2lp4_A 83 LNTDIINLFLETKDIMQ 99 (225)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 33455665555555443
No 10
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=9.17 E-value=1.1e+03 Score=23.04 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHhcccccceeccCCchhHHHHHHHHHHHhhccCCchhhhhHHHHHH
Q 000946 191 EEFYHTLKFILTETLEA-EGRMWVERIYDDINVSVEKRSIHVDFQLTKLPLVISRVTALMGVLKEAETPVLQKGAVQAVQ 269 (1212)
Q Consensus 191 ~e~y~s~k~il~~ll~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~l~~Lp~l~~~~~~L~~~L~~~~~~~~~~~~v~~lq 269 (1212)
.|..+.+...|..|-.+ ++...++.||+.+...-=... .+.+..+-.+..++.++++.+.+.+.+ ....++..|.
T Consensus 21 ~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~---~~G~~~i~~laH~lE~ll~~lr~g~~~-~~~~l~dlll 96 (144)
T 3kyj_A 21 AQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSR---VLGLSVVESRAHLCEDLIGLVRDAGVP-MDGEIVEILL 96 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHSCCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHH---hcCchHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHH
Confidence 44444444444444333 466678888887765443333 356778888899999999988775522 2334555555
Q ss_pred HHHHH
Q 000946 270 DLYDV 274 (1212)
Q Consensus 270 ~l~e~ 274 (1212)
.-++.
T Consensus 97 ~~~D~ 101 (144)
T 3kyj_A 97 FASDT 101 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
Done!