Query 000946
Match_columns 1212
No_of_seqs 199 out of 317
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 02:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000946.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000946hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 14.5 29 0.0021 34.4 1.8 33 587-619 94-129 (328)
2 d1tqga_ a.24.10.3 (A:) Chemota 13.6 3E+02 0.022 22.9 8.2 79 191-273 15-94 (105)
3 d1wlna1 b.26.1.2 (A:8-114) Afa 12.8 35 0.0025 29.9 1.6 44 569-613 19-73 (107)
4 d1i5na_ a.24.10.3 (A:) Chemota 12.2 4E+02 0.029 22.7 9.0 82 190-275 10-95 (128)
5 d1rw0a_ d.194.1.2 (A:) Hypothe 10.7 33 0.0024 34.4 0.8 13 691-703 16-29 (243)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 9.7 20 0.0015 28.3 -0.9 12 637-648 17-28 (48)
7 d1n0ua4 d.58.11.1 (A:482-560) 9.6 73 0.0053 26.6 2.5 33 507-539 7-39 (79)
8 d1r9wa_ d.89.1.2 (A:) Replicat 9.0 53 0.0039 31.0 1.5 43 707-753 39-82 (145)
9 d1omza_ c.68.1.15 (A:) Alpha-1 8.7 40 0.0029 30.1 0.5 15 364-378 1-15 (265)
10 d1jb0m_ f.23.19.1 (M:) Subunit 7.4 1.6E+02 0.011 21.0 3.0 21 37-57 4-24 (31)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.51 E-value=29 Score=34.43 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCccCccchhhhccccccccccCC---ccchHHHHH
Q 000946 587 GKPENQNHAVIFTRGNAIQTIDMN---QDNYFEEAL 619 (1212)
Q Consensus 587 GKpeNQNHAiIFtRGE~lQtIDmN---QDnYlEEaL 619 (1212)
|.+...|.++--++||+|=.+|.. ..++||+.+
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHH
Confidence 667778888888888888888765 556666544
No 2
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.57 E-value=3e+02 Score=22.92 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHhcccccceeccCCchhHHHHHHHHHHHhhccCCchhhhhHHHHHH
Q 000946 191 EEFYHTLKFILTETLEA-EGRMWVERIYDDINVSVEKRSIHVDFQLTKLPLVISRVTALMGVLKEAETPVLQKGAVQAVQ 269 (1212)
Q Consensus 191 ~e~y~s~k~il~~ll~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~l~~Lp~l~~~~~~L~~~L~~~~~~~~~~~~v~~lq 269 (1212)
.|.-+.+...|..+-.+ ++...++.+|+.+...--... .+.+..+-.+..++.++++.+.+.+.+- ....+..+.
T Consensus 15 ~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~---~~gl~~i~~lah~lE~~l~~~~~~~~~~-~~~~~~~l~ 90 (105)
T d1tqga_ 15 KEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAG---TMGFSSMAKLCHTLENILDKARNSEIKI-TSDLLDKIF 90 (105)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHTTSSCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchh---hcCHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Confidence 33444445555544333 355667888877655433333 3577788889999999999887755321 233444444
Q ss_pred HHHH
Q 000946 270 DLYD 273 (1212)
Q Consensus 270 ~l~e 273 (1212)
.-.+
T Consensus 91 ~~~d 94 (105)
T d1tqga_ 91 AGVD 94 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 3
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.83 E-value=35 Score=29.92 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.7
Q ss_pred ccceeEEeecCCCCCCCCCCc-cC----------ccchhhhccccccccccCCccc
Q 000946 569 KDKEIYSIKLPGNPKLGEGKP-EN----------QNHAVIFTRGNAIQTIDMNQDN 613 (1212)
Q Consensus 569 ~~~eiYRIkLPG~piLGEGKp-eN----------QNHAiIFtRGE~lQtIDmNQDn 613 (1212)
....+|+++ +|...+|-|++ +| ..||.|-..++.+.+.|.+..|
T Consensus 19 ~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 19 DKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CccEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 345566666 45566665543 22 4699999999999999988776
No 4
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=12.22 E-value=4e+02 Score=22.70 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=48.8
Q ss_pred HHHHHHHHHH---HHHHhccc-chhhHHHHHHHHHHHHHhcccccceeccCCchhHHHHHHHHHHHhhccCCchhhhhHH
Q 000946 190 VEEFYHTLKF---ILTETLEA-EGRMWVERIYDDINVSVEKRSIHVDFQLTKLPLVISRVTALMGVLKEAETPVLQKGAV 265 (1212)
Q Consensus 190 v~e~y~s~k~---il~~ll~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~l~~Lp~l~~~~~~L~~~L~~~~~~~~~~~~v 265 (1212)
+.|+-+.+.. .|..+-.+ ++...++.+|+.+...--.... +.+..+-.+..++.++++.+.+.+. .....++
T Consensus 10 ~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~---~gl~~i~~lah~lE~~l~~lr~~~~-~~~~~~~ 85 (128)
T d1i5na_ 10 FDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGT---FGFTILQETTHLMENLLDEARRGEM-QLNTDII 85 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTTSS-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhh---cChHHHHHHHHHHHHHHHHHHhCCC-CCCHHHH
Confidence 4455544444 44444333 3566788888776654433333 4788889999999999999977552 2233444
Q ss_pred HHHHHHHHHH
Q 000946 266 QAVQDLYDVV 275 (1212)
Q Consensus 266 ~~lq~l~e~v 275 (1212)
..+..-.+.+
T Consensus 86 ~~l~~~~d~l 95 (128)
T d1i5na_ 86 NLFLETKDIM 95 (128)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 5
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi [TaxId: 90370]}
Probab=10.69 E-value=33 Score=34.42 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=9.6
Q ss_pred ccccccc-Cccccc
Q 000946 691 RVFHITR-GGISKA 703 (1212)
Q Consensus 691 ~~F~~TR-GGvSKA 703 (1212)
+.+++|| ||+||.
T Consensus 16 ~~~fTtR~GGvS~~ 29 (243)
T d1rw0a_ 16 AACSSTRIGGVSLS 29 (243)
T ss_dssp EEEEECSCSCCCCT
T ss_pred EEEEEECCCCccCC
Confidence 5667777 888876
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.74 E-value=20 Score=28.33 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=8.6
Q ss_pred ceeecccceeec
Q 000946 637 PTILGVREHVFT 648 (1212)
Q Consensus 637 ~tIlG~REhIFT 648 (1212)
-+=+-+|+||||
T Consensus 17 s~~~SvrdHiFs 28 (48)
T d2yrka1 17 SARLSIRDHIFS 28 (48)
T ss_dssp CSSSCHHHHHTS
T ss_pred eeecchHhhhhh
Confidence 344567899998
No 7
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.56 E-value=73 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.2
Q ss_pred EEEeeccCCCCcCCccchHhHHHHHHhCcCcEE
Q 000946 507 VVTSQIYGKQKEDQKPEAADIALLMQRNEALRV 539 (1212)
Q Consensus 507 VVscQ~Yg~~k~~~~~~a~dI~~Lm~~~P~LrV 539 (1212)
|+++-++-+.+.+.+.-.+-+..|.+..|+++|
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v 39 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT 39 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 677888887777766666788999999999987
No 8
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=8.96 E-value=53 Score=31.02 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=28.8
Q ss_pred cccchhhhhhhhhhccCceeeeeeeEEeccc-cccCcccccceeeecc
Q 000946 707 INISEDIYAGFNTTLRQGNVTHHEYIQVGKG-RDVGLNQIAVFEGKVA 753 (1212)
Q Consensus 707 inLSEDIFaG~N~~lRgG~I~h~EYiQcGKG-RDvG~~qI~~FeaKIa 753 (1212)
-+++||++.|...+|+ .||+|+|+=.- -+.|+-.....+-|.+
T Consensus 39 ~gv~~~l~ea~k~lLq----~hc~y~~~~~~~~~~g~~~L~Ll~Fk~~ 82 (145)
T d1r9wa_ 39 FGVNPTIAEGFKTLIQ----PFILYAHIQCLDCKWGVLILALLRYKCG 82 (145)
T ss_dssp EEECHHHHHTHHHHHG----GGEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEeCHHHHHHHHHHHH----hheeEEEEEeccCCCceEEEEEEEEecC
Confidence 3688999999999998 89999985311 1123334444555554
No 9
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.66 E-value=40 Score=30.08 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccceeccccccce
Q 000946 364 EMLSFCVFTPYYSEI 378 (1212)
Q Consensus 364 ~M~sfSVlTPyY~E~ 378 (1212)
+|-||||++|-|+|.
T Consensus 1 ~~~~~tvii~tyn~~ 15 (265)
T d1omza_ 1 ALDSFTLIMQTYNRT 15 (265)
T ss_dssp CTTCEEEEEEESSCH
T ss_pred CCCcEEEEEEcCCCH
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=7.44 E-value=1.6e+02 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHhhHHhhh
Q 000946 37 LDIYIFYTLMSAAYGFLLGAR 57 (1212)
Q Consensus 37 mD~QIWyai~s~~~G~~~G~~ 57 (1212)
-|||+.-|..-+++-|+..++
T Consensus 4 sdtqv~valvial~pg~lafr 24 (31)
T d1jb0m_ 4 TDTQVYVALVIALLPAVLAFR 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999998887765
Done!