Query 000947
Match_columns 1212
No_of_seqs 271 out of 439
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 11:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1213 Sister chromatid cohes 100.0 9.6E-59 2.1E-63 536.1 25.3 123 1-123 1-123 (614)
2 PF04825 Rad21_Rec8_N: N termi 100.0 8.6E-35 1.9E-39 275.5 4.8 111 1-111 1-111 (111)
3 PF04824 Rad21_Rec8: Conserved 99.6 5.5E-16 1.2E-20 132.8 0.4 52 1156-1207 4-55 (55)
4 PF02616 ScpA_ScpB: ScpA/B pro 95.8 0.006 1.3E-07 64.8 3.2 48 1156-1203 194-241 (242)
5 PRK00104 scpA segregation and 95.6 0.015 3.2E-07 63.0 4.9 64 1133-1205 176-239 (242)
6 COG1354 scpA Rec8/ScpA/Scc1-li 90.8 0.33 7.2E-06 52.9 5.1 50 1157-1206 191-241 (248)
7 PRK00478 scpA segregation and 84.2 0.85 1.9E-05 54.8 3.5 65 1133-1204 345-413 (505)
8 PF06278 DUF1032: Protein of u 56.6 4.4 9.5E-05 49.7 0.7 39 1157-1195 494-532 (565)
9 KOG0447 Dynamin-like GTP bindi 34.7 16 0.00035 45.2 0.8 23 693-716 907-929 (980)
10 KOG1213 Sister chromatid cohes 31.8 31 0.00067 43.1 2.5 80 1125-1209 531-611 (614)
11 PF06278 DUF1032: Protein of u 20.3 1.2E+02 0.0026 37.9 4.5 30 57-86 7-36 (565)
No 1
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.6e-59 Score=536.13 Aligned_cols=123 Identities=71% Similarity=1.097 Sum_probs=120.8
Q ss_pred CCcchhhhhccCChhHHHHHhhccCCCchhhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEecchhhHHHhHHH
Q 000947 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE 80 (1212)
Q Consensus 1 MFYS~~LLsKKGPLatIWLAAtl~KKLsKkqIl~vDI~ksceeIl~PevPLALRLSG~LLlGVVRIYSRKv~YLLsDcn~ 80 (1212)
|||||+||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||||||||+||||||||||+|||+|||+
T Consensus 1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne 80 (614)
T KOG1213|consen 1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE 80 (614)
T ss_pred CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 000947 81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPD 123 (1212)
Q Consensus 81 aL~KIk~aFR~~~VDLP~e~~~A~~eaITLPE~fdLDD~eLPd 123 (1212)
+|.|||++||+++||+|......++.+||||++|++|++++|+
T Consensus 81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~ 123 (614)
T KOG1213|consen 81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPD 123 (614)
T ss_pred HHHHHHHHhccccccCCCcccccccccccchhhhccccccccc
Confidence 9999999999999999999999999999999999999988885
No 2
>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding
Probab=100.00 E-value=8.6e-35 Score=275.54 Aligned_cols=111 Identities=54% Similarity=0.917 Sum_probs=109.6
Q ss_pred CCcchhhhhccCChhHHHHHhhccCCCchhhhcccchHHHHHHhcCCCCcchhhhhhccccceEEEEecchhhHHHhHHH
Q 000947 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSE 80 (1212)
Q Consensus 1 MFYS~~LLsKKGPLatIWLAAtl~KKLsKkqIl~vDI~ksceeIl~PevPLALRLSG~LLlGVVRIYSRKv~YLLsDcn~ 80 (1212)
||||++||+|+|||++||+|||+++||+|++|+++||+++|++|++|+.|+|||+||+||+||||||+||++||++||+.
T Consensus 1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~ 80 (111)
T PF04825_consen 1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE 80 (111)
T ss_pred CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCCcccC
Q 000947 81 ALLKIKQAFRSTAVDLPPEESTAPYHSITLP 111 (1212)
Q Consensus 81 aL~KIk~aFR~~~VDLP~e~~~A~~eaITLP 111 (1212)
++.+|+++|++..+|+|.++..+++++||||
T Consensus 81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p 111 (111)
T PF04825_consen 81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP 111 (111)
T ss_pred HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence 9999999999888999999999999999998
No 3
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0000228 nuclear chromosome; PDB: 1W1W_E.
Probab=99.55 E-value=5.5e-16 Score=132.83 Aligned_cols=52 Identities=52% Similarity=0.815 Sum_probs=37.2
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecCCCcc
Q 000947 1156 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAKL 1207 (1212)
Q Consensus 1156 dsLSfsqLL~G~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~IsagPkL 1207 (1212)
+.++|++|+.|++|++||++||++|||+|++||+|+|.+|||||.|++||+|
T Consensus 4 ~~~~~~~l~~~~tr~~AA~~Fy~~LvL~t~~~I~v~Q~~pygdI~I~~~~~~ 55 (55)
T PF04824_consen 4 ESLSLSQLPEGMTRKEAARAFYELLVLATKGYIDVKQEEPYGDIEISPGPKF 55 (55)
T ss_dssp HHTT----------HHHHHHHHHHHHHHHHTSEEEEESSTT--EEEEE-GGG
T ss_pred cccHHHHhhCCCCHHHHHHHHHHHHHHhhCCeEEeecCCCCCCeEEeeCCCC
Confidence 4688999999999999999999999999999999999999999999999986
No 4
>PF02616 ScpA_ScpB: ScpA/B protein; InterPro: IPR003768 This family represents ScpA, which along with ScpB (IPR005234 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes [].
Probab=95.85 E-value=0.006 Score=64.76 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=45.7
Q ss_pred ceeeHHHHhccCCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecC
Q 000947 1156 KVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKP 1203 (1212)
Q Consensus 1156 dsLSfsqLL~G~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~Isa 1203 (1212)
..++|++|+.+.+|.+....|--+|-|.+.|.|.+.|.+|||+|.|..
T Consensus 194 ~~~~f~~l~~~~~r~~~V~tFLAlLeL~k~~~i~i~Q~e~fgdI~I~~ 241 (242)
T PF02616_consen 194 GWVSFSELFEEPSRSEVVVTFLALLELVKQGKIEIEQEEPFGDIYIEL 241 (242)
T ss_pred CceeHHHHcCcCCcCeeHHHHHHHHHHhhcCcEEEEEcCCCCceEEEe
Confidence 479999999999999999999999999999999999999999999964
No 5
>PRK00104 scpA segregation and condensation protein A; Reviewed
Probab=95.59 E-value=0.015 Score=62.97 Aligned_cols=64 Identities=23% Similarity=0.298 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHhccCCCCCCceeeHHHHhccCCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecCCC
Q 000947 1133 SSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGA 1205 (1212)
Q Consensus 1133 SKRT~qML~~LRt~F~~~d~~g~dsLSfsqLL~G~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~IsagP 1205 (1212)
..+...+.+.|+.. ..++|.+|+.+.+|++....|--+|-|.+.|.|.+.|.++||+|.|.++.
T Consensus 176 ~~~~~~i~~~l~~~---------~~~~f~~l~~~~~~~~~v~tFLAlLEL~k~~~i~l~Q~~~f~~I~i~~~~ 239 (242)
T PRK00104 176 EDRMLYILELLESK---------KRLSFSELFKEPSKNEFVVTFLALLELIKLQEIIVEQEENFGEIYLEKGE 239 (242)
T ss_pred HHHHHHHHHHHhhC---------CcEeHHHHhCCCCchhhHHHHHHHHHHHhcCeeEEEEcCCCCeEEEEeCC
Confidence 34555555555432 36999999988999999999999999999999999999999999997653
No 6
>COG1354 scpA Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair]
Probab=90.83 E-value=0.33 Score=52.91 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=41.0
Q ss_pred eeeHHHHhc-cCCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecCCCc
Q 000947 1157 VLALDHLLV-GKTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPGAK 1206 (1212)
Q Consensus 1157 sLSfsqLL~-G~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~IsagPk 1206 (1212)
.+.|..+.. ...+-++...|--+|.|.+.|.|++.|++|||+|.|..+..
T Consensus 191 ~~~~~~~~~~~~~~~~vv~~FlAlLeL~k~~~v~l~Qee~fgdI~i~~~~~ 241 (248)
T COG1354 191 VLRFSDLFSPEERKDEVVSTFLALLELVKEGKVELEQEEPFGDIYIRLLGE 241 (248)
T ss_pred cccHHHhcccccchhHHHHHHHHHHHHHhcCceEEEecccccceEEEecCC
Confidence 577777776 34445556689999999999999999999999999998754
No 7
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=84.18 E-value=0.85 Score=54.83 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHhccCCCCCCceeeHHHHhcc----CCHHHHHHHHHHhhccCCCCceeccCCCCCcceeecCC
Q 000947 1133 SSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVG----KTRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKPG 1204 (1212)
Q Consensus 1133 SKRT~qML~~LRt~F~~~d~~g~dsLSfsqLL~G----~TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~Isag 1204 (1212)
..+...+++.|+.. +...++|.+|+.+ .+|.+....|--+|.|.+.+.|.+.|.++||+|.|...
T Consensus 345 ee~m~~I~~~L~~~-------~~~~~~F~~L~~~~~~~~sr~evVvtFLAlLEL~K~~~I~i~Q~~~f~~I~i~~~ 413 (505)
T PRK00478 345 EQVQNEILSIIKQF-------LYNQVSLKRVLLKINHKISLMYFVTAFVALLVLVNNQKIDLEQKNDDEELYICLL 413 (505)
T ss_pred HHHHHHHHHHHHhc-------CCCeEEhHHHhhhcccCCCcceEehHHHHHHHHhccCeEEEEEcCCCCeEEEEEc
Confidence 34556666666542 0135899999973 58889999999999999999999999999999999765
No 8
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=56.64 E-value=4.4 Score=49.69 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=36.5
Q ss_pred eeeHHHHhccCCHHHHHHHHHHhhccCCCCceeccCCCC
Q 000947 1157 VLALDHLLVGKTRKEASRMFFETLVLKTKDYIHVEQARP 1195 (1212)
Q Consensus 1157 sLSfsqLL~G~TRKeAAr~FFElLVLKTrd~IdVeQeEP 1195 (1212)
..+|.+|+.|..+-+++|.|+.+|.|+..+=|++.|..+
T Consensus 494 ~~~f~~vv~~~~~~ev~R~fla~LqLaN~~nv~i~~~~~ 532 (565)
T PF06278_consen 494 KATFADVVEGKPPYEVCRYFLASLQLANDGNVEISQDPG 532 (565)
T ss_pred eeeHHHHhCCCChhHHHHHHHHHHHHhcCCCeeeccCCc
Confidence 578999999999999999999999999999999998765
No 9
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=34.73 E-value=16 Score=45.22 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=18.9
Q ss_pred eeehhhhhhhhhcChHHHHHhhhc
Q 000947 693 MVLHGDVIRQQLTNTEDIRRIRKK 716 (1212)
Q Consensus 693 MVlhgD~IRQQLtnTEDIRRiRkK 716 (1212)
.-|-|.++|||+|||| .||+-|.
T Consensus 907 ~~iT~NaLRQQ~tNtE-~RRLeKe 929 (980)
T KOG0447|consen 907 LAITANTLRQQLTNTE-VRRLEKN 929 (980)
T ss_pred HHHhHHHHHHHHhhHH-HHHHHHH
Confidence 3467999999999998 5888773
No 10
>KOG1213 consensus Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.78 E-value=31 Score=43.11 Aligned_cols=80 Identities=34% Similarity=0.487 Sum_probs=68.7
Q ss_pred cccccccccHHHHHHHHHHHHHhccCCCCCCceeeHHHHhccC-CHHHHHHHHHHhhccCCCCceeccCCCCCcceeecC
Q 000947 1125 RVLENSGWSSRTRAVSKYLQTLFVREPVQGRKVLALDHLLVGK-TRKEASRMFFETLVLKTKDYIHVEQARPLDNINIKP 1203 (1212)
Q Consensus 1125 q~~Ee~gWSKRT~qML~~LRt~F~~~d~~g~dsLSfsqLL~G~-TRKeAAr~FFElLVLKTrd~IdVeQeEPYGDI~Isa 1203 (1212)
+-.+.+.|+|||.+++..++ +... +...++|++|+.+. +||+||++||.+|||||++||+|.|.+|||||.|.+
T Consensus 531 ~~~~~~~~~k~~~~~~~~~~--~~~~---~~~~~e~~~~l~~~~~Rk~Aa~~Ff~~LvLkt~~~i~v~Q~epygdI~i~~ 605 (614)
T KOG1213|consen 531 ETQEERELAKRTEQILTSIQ--LEPE---TNGQIELSELLPNGPNRKQAARKFFSLLVLKTRQAIEVKQDEPYGDIIITP 605 (614)
T ss_pred cccchHHHHHHHHHhhcccc--cccC---CccchhHHHhccCCCCHHHHHHHHHHHHHHhhccccccccCCcccceeecc
Confidence 33448999999999999998 3322 22467899999755 999999999999999999999999999999999999
Q ss_pred CCcccc
Q 000947 1204 GAKLMK 1209 (1212)
Q Consensus 1204 gPkL~k 1209 (1212)
||+|+-
T Consensus 606 gp~~~~ 611 (614)
T KOG1213|consen 606 GPNFHI 611 (614)
T ss_pred Cccccc
Confidence 999874
No 11
>PF06278 DUF1032: Protein of unknown function (DUF1032); InterPro: IPR009378 This entry includes a regulatory subunit of Non-SMC condensin II complex called H2. Non-SMC condensin II complex seems to provide chromosomes with an additional level of organisation and rigidity and in establishing mitotic chromosome architecture. May play a role in lineage-specific role in T-cell development.
Probab=20.25 E-value=1.2e+02 Score=37.86 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=26.5
Q ss_pred hccccceEEEEecchhhHHHhHHHHHHHHH
Q 000947 57 SHLLLGVVRIYSRKVNYLFDDCSEALLKIK 86 (1212)
Q Consensus 57 G~LLlGVVRIYSRKv~YLLsDcn~aL~KIk 86 (1212)
+-|+.|.+-||||||+|||+=+-.+|.-|.
T Consensus 7 alliQgsa~vYskKVeyly~lv~~~l~~l~ 36 (565)
T PF06278_consen 7 ALLIQGSACVYSKKVEYLYSLVYQALDFLS 36 (565)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999887664
Done!