Query 000950
Match_columns 1211
No_of_seqs 633 out of 3762
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 11:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-64 2.2E-69 586.0 39.9 554 406-1198 182-790 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.6E-60 5.6E-65 558.2 33.0 392 663-1182 276-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 2.4E-54 5.2E-59 482.7 28.1 377 819-1202 7-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-50 2.7E-55 506.9 40.7 538 409-1197 173-730 (733)
5 KOG0736 Peroxisome assembly fa 100.0 3E-48 6.5E-53 458.7 39.2 441 650-1183 479-940 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 3.9E-45 8.5E-50 407.7 23.7 284 902-1198 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 2E-43 4.2E-48 424.4 34.3 452 605-1180 20-488 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 3.4E-44 7.5E-49 399.0 24.0 247 903-1178 145-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-44 5.3E-49 417.2 23.2 296 905-1203 186-521 (802)
10 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-40 2.8E-45 360.6 18.1 299 896-1200 120-439 (439)
11 KOG0735 AAA+-type ATPase [Post 100.0 5.8E-39 1.2E-43 376.9 30.3 298 810-1138 595-894 (952)
12 KOG0741 AAA+-type ATPase [Post 100.0 2E-37 4.3E-42 354.9 20.6 387 649-1126 304-720 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-35 3E-40 353.4 34.1 319 808-1196 162-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 8.8E-37 1.9E-41 349.9 20.5 249 903-1182 298-548 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-35 3.2E-40 342.3 18.2 279 904-1200 148-427 (428)
16 KOG0652 26S proteasome regulat 100.0 5.1E-35 1.1E-39 312.3 18.5 255 903-1210 165-423 (424)
17 KOG0727 26S proteasome regulat 100.0 7E-34 1.5E-38 302.6 20.6 245 902-1175 148-396 (408)
18 KOG0728 26S proteasome regulat 100.0 1.5E-33 3.2E-38 299.9 20.5 244 905-1177 143-390 (404)
19 KOG0726 26S proteasome regulat 100.0 2.2E-34 4.8E-39 311.5 14.1 243 905-1176 181-427 (440)
20 PTZ00454 26S protease regulato 100.0 3.4E-33 7.4E-38 326.5 24.9 246 903-1177 139-388 (398)
21 COG1223 Predicted ATPase (AAA+ 100.0 1.8E-33 3.8E-38 301.2 18.8 242 905-1179 117-359 (368)
22 KOG0731 AAA+-type ATPase conta 100.0 2.5E-33 5.4E-38 339.8 22.3 248 902-1179 304-557 (774)
23 KOG0730 AAA+-type ATPase [Post 100.0 9.8E-34 2.1E-38 334.4 17.8 263 905-1204 181-445 (693)
24 PRK03992 proteasome-activating 100.0 6.2E-32 1.4E-36 316.0 24.8 250 904-1182 126-379 (389)
25 KOG0729 26S proteasome regulat 100.0 3.9E-32 8.4E-37 291.0 16.1 248 903-1179 171-422 (435)
26 PTZ00361 26 proteosome regulat 100.0 4.8E-31 1E-35 310.7 22.9 245 904-1177 178-426 (438)
27 KOG0732 AAA+-type ATPase conta 100.0 1.2E-32 2.5E-37 340.8 8.7 408 590-1094 288-728 (1080)
28 TIGR01241 FtsH_fam ATP-depende 100.0 8.5E-31 1.8E-35 315.4 24.4 269 902-1200 48-320 (495)
29 COG0465 HflB ATP-dependent Zn 100.0 7.2E-31 1.6E-35 314.2 20.6 250 903-1182 144-397 (596)
30 TIGR01243 CDC48 AAA family ATP 100.0 5.8E-30 1.3E-34 321.1 23.2 288 905-1203 174-463 (733)
31 TIGR01242 26Sp45 26S proteasom 100.0 4E-29 8.7E-34 290.0 23.8 243 904-1175 117-363 (364)
32 TIGR03689 pup_AAA proteasome A 100.0 2.5E-28 5.4E-33 291.3 25.3 274 903-1202 176-504 (512)
33 CHL00176 ftsH cell division pr 100.0 1.6E-28 3.5E-33 301.0 22.4 243 904-1176 178-424 (638)
34 KOG0732 AAA+-type ATPase conta 100.0 9E-29 1.9E-33 306.5 17.9 348 790-1182 176-532 (1080)
35 KOG0651 26S proteasome regulat 100.0 1.5E-28 3.2E-33 269.4 13.5 243 905-1176 128-374 (388)
36 PRK10733 hflB ATP-dependent me 100.0 1.7E-27 3.7E-32 294.2 24.0 249 903-1181 146-398 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.7E-26 3.7E-31 295.5 20.5 189 936-1132 1623-1860(2281)
38 KOG0741 AAA+-type ATPase [Post 99.9 8.6E-27 1.9E-31 268.0 12.0 263 905-1181 215-496 (744)
39 PLN00020 ribulose bisphosphate 99.9 4E-24 8.7E-29 242.7 23.3 188 941-1132 145-354 (413)
40 KOG0736 Peroxisome assembly fa 99.9 6E-23 1.3E-27 245.0 15.5 250 945-1203 432-682 (953)
41 KOG0738 AAA+-type ATPase [Post 99.9 1.1E-22 2.3E-27 228.8 13.4 250 407-877 205-472 (491)
42 COG1222 RPT1 ATP-dependent 26S 99.9 1.8E-22 3.8E-27 226.2 12.3 233 407-876 144-394 (406)
43 KOG0735 AAA+-type ATPase [Post 99.9 1.1E-21 2.5E-26 232.1 14.5 261 909-1203 408-677 (952)
44 TIGR02639 ClpA ATP-dependent C 99.8 3.5E-19 7.5E-24 224.0 31.5 209 910-1132 455-714 (731)
45 KOG0737 AAA+-type ATPase [Post 99.8 3.1E-20 6.8E-25 209.4 12.9 232 395-845 73-317 (386)
46 PRK11034 clpA ATP-dependent Cl 99.8 7.7E-18 1.7E-22 210.6 30.7 165 910-1094 459-668 (758)
47 CHL00181 cbbX CbbX; Provisiona 99.8 6.6E-19 1.4E-23 198.8 19.1 237 910-1171 24-282 (287)
48 TIGR02880 cbbX_cfxQ probable R 99.8 2E-18 4.3E-23 194.7 18.7 237 910-1171 23-281 (284)
49 TIGR02881 spore_V_K stage V sp 99.8 2.5E-18 5.5E-23 191.3 17.3 216 908-1135 5-244 (261)
50 PF00004 AAA: ATPase family as 99.8 3.5E-18 7.6E-23 167.8 12.3 130 947-1078 1-132 (132)
51 KOG0744 AAA+-type ATPase [Post 99.8 3E-18 6.5E-23 189.6 12.2 197 896-1094 129-342 (423)
52 KOG0739 AAA+-type ATPase [Post 99.8 8.1E-19 1.8E-23 191.9 7.5 223 395-838 115-349 (439)
53 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-17 3E-22 188.1 17.4 208 906-1124 352-587 (630)
54 COG0464 SpoVK ATPases of the A 99.7 6.3E-17 1.4E-21 195.4 18.5 248 928-1203 3-252 (494)
55 CHL00095 clpC Clp protease ATP 99.7 2.2E-15 4.9E-20 191.9 32.3 211 909-1132 509-784 (821)
56 PRK10865 protein disaggregatio 99.7 2.4E-15 5.2E-20 191.8 29.0 173 908-1094 567-781 (857)
57 KOG0734 AAA+-type ATPase conta 99.7 4.4E-17 9.5E-22 188.9 11.4 220 399-841 289-523 (752)
58 COG0542 clpA ATP-binding subun 99.7 1.7E-15 3.6E-20 186.8 25.6 163 909-1094 491-707 (786)
59 TIGR03346 chaperone_ClpB ATP-d 99.7 1E-14 2.2E-19 186.4 33.5 211 909-1133 565-829 (852)
60 CHL00195 ycf46 Ycf46; Provisio 99.7 2E-16 4.4E-21 189.7 14.6 248 390-877 207-466 (489)
61 TIGR02639 ClpA ATP-dependent C 99.7 9.9E-16 2.1E-20 193.0 18.2 185 906-1115 179-386 (731)
62 PF05496 RuvB_N: Holliday junc 99.7 6.3E-16 1.4E-20 166.9 13.8 197 906-1125 21-225 (233)
63 TIGR03345 VI_ClpV1 type VI sec 99.7 2.7E-14 5.8E-19 181.9 30.8 207 909-1132 566-833 (852)
64 KOG0743 AAA+-type ATPase [Post 99.6 2.4E-15 5.2E-20 174.2 17.5 220 905-1135 197-429 (457)
65 COG2256 MGS1 ATPase related to 99.6 4.9E-15 1.1E-19 169.3 18.9 181 905-1126 20-217 (436)
66 CHL00206 ycf2 Ycf2; Provisiona 99.6 8.3E-16 1.8E-20 198.8 13.0 132 647-843 1718-1861(2281)
67 TIGR00635 ruvB Holliday juncti 99.6 1.3E-14 2.8E-19 164.4 21.1 198 907-1127 2-207 (305)
68 PRK00080 ruvB Holliday junctio 99.6 2.6E-14 5.7E-19 164.2 22.4 201 906-1129 22-230 (328)
69 KOG0731 AAA+-type ATPase conta 99.6 2E-15 4.3E-20 185.0 11.6 221 403-843 300-537 (774)
70 PRK03992 proteasome-activating 99.6 3.7E-15 8E-20 175.2 13.3 234 407-876 124-374 (389)
71 TIGR02902 spore_lonB ATP-depen 99.6 1.9E-14 4.1E-19 175.3 19.1 218 905-1173 61-330 (531)
72 PTZ00454 26S protease regulato 99.6 4.1E-15 8.8E-20 174.9 12.0 216 406-842 137-369 (398)
73 TIGR00763 lon ATP-dependent pr 99.6 2.3E-14 5E-19 181.7 18.9 212 910-1133 321-558 (775)
74 PRK11034 clpA ATP-dependent Cl 99.6 3.6E-14 7.8E-19 178.0 18.2 197 907-1127 184-407 (758)
75 KOG0740 AAA+-type ATPase [Post 99.5 1.1E-14 2.4E-19 169.8 9.7 211 410-841 149-373 (428)
76 KOG0728 26S proteasome regulat 99.5 1.5E-14 3.3E-19 155.5 8.8 145 648-873 227-387 (404)
77 TIGR03345 VI_ClpV1 type VI sec 99.5 2.6E-13 5.7E-18 172.9 21.1 196 906-1126 184-407 (852)
78 TIGR01241 FtsH_fam ATP-depende 99.5 2.3E-14 5.1E-19 173.4 10.6 216 404-841 45-277 (495)
79 KOG0726 26S proteasome regulat 99.5 1.5E-14 3.2E-19 158.4 6.9 142 649-872 266-424 (440)
80 PRK12323 DNA polymerase III su 99.5 2E-13 4.4E-18 165.8 17.4 185 905-1126 12-230 (700)
81 PTZ00361 26 proteosome regulat 99.5 4.5E-14 9.8E-19 167.5 11.5 129 649-843 264-408 (438)
82 PRK14956 DNA polymerase III su 99.5 3.1E-13 6.7E-18 160.8 18.4 184 905-1125 14-226 (484)
83 COG2255 RuvB Holliday junction 99.5 3.3E-13 7.1E-18 148.6 16.0 189 905-1115 22-218 (332)
84 CHL00095 clpC Clp protease ATP 99.5 5.1E-13 1.1E-17 170.5 18.7 185 906-1115 176-382 (821)
85 PRK07003 DNA polymerase III su 99.5 5.8E-13 1.3E-17 163.6 18.0 185 905-1126 12-225 (830)
86 TIGR03346 chaperone_ClpB ATP-d 99.5 7.7E-13 1.7E-17 169.4 19.5 184 906-1114 170-376 (852)
87 PRK10865 protein disaggregatio 99.5 4.4E-13 9.5E-18 171.3 17.1 183 906-1113 175-380 (857)
88 CHL00176 ftsH cell division pr 99.5 1.8E-13 3.9E-18 169.1 12.9 219 403-842 172-406 (638)
89 PRK13342 recombination factor 99.5 2.1E-12 4.6E-17 153.2 21.1 181 906-1127 9-202 (413)
90 KOG2028 ATPase related to the 99.5 2.4E-12 5.3E-17 144.7 19.9 212 905-1179 134-372 (554)
91 PRK14949 DNA polymerase III su 99.5 1.4E-12 3.1E-17 162.8 19.3 191 905-1126 12-225 (944)
92 PRK14962 DNA polymerase III su 99.5 2E-12 4.3E-17 155.4 19.8 184 905-1125 10-222 (472)
93 PRK05342 clpX ATP-dependent pr 99.5 8.6E-13 1.9E-17 155.9 16.4 185 905-1089 66-322 (412)
94 TIGR00390 hslU ATP-dependent p 99.4 8.9E-13 1.9E-17 153.9 15.6 178 911-1088 14-342 (441)
95 PRK14961 DNA polymerase III su 99.4 2E-12 4.3E-17 151.0 18.6 186 905-1127 12-226 (363)
96 PRK07994 DNA polymerase III su 99.4 2.4E-12 5.1E-17 158.6 19.2 185 905-1126 12-225 (647)
97 PRK14958 DNA polymerase III su 99.4 2.3E-12 4.9E-17 156.2 18.8 187 905-1128 12-227 (509)
98 PRK14960 DNA polymerase III su 99.4 2.1E-12 4.5E-17 157.5 18.4 185 905-1126 11-224 (702)
99 KOG2004 Mitochondrial ATP-depe 99.4 1.7E-12 3.7E-17 155.7 17.1 172 910-1094 412-598 (906)
100 TIGR02928 orc1/cdc6 family rep 99.4 8.8E-12 1.9E-16 144.6 22.3 202 909-1131 15-256 (365)
101 PRK04195 replication factor C 99.4 3.1E-12 6.7E-17 154.6 18.7 187 905-1122 10-204 (482)
102 PLN03025 replication factor C 99.4 4.2E-12 9.1E-17 145.7 18.1 181 905-1123 9-202 (319)
103 PRK10733 hflB ATP-dependent me 99.4 7.2E-13 1.6E-17 164.9 12.4 127 650-842 233-375 (644)
104 PRK00149 dnaA chromosomal repl 99.4 5.4E-12 1.2E-16 151.3 19.2 168 945-1126 149-327 (450)
105 PRK06645 DNA polymerase III su 99.4 6.8E-12 1.5E-16 151.6 19.9 185 905-1126 17-234 (507)
106 TIGR00362 DnaA chromosomal rep 99.4 5.3E-12 1.1E-16 149.3 18.1 169 945-1127 137-316 (405)
107 COG0466 Lon ATP-dependent Lon 99.4 4.2E-12 9E-17 153.5 17.0 172 910-1093 324-509 (782)
108 PRK00411 cdc6 cell division co 99.4 1.7E-11 3.6E-16 143.8 21.8 201 909-1130 30-263 (394)
109 PRK14964 DNA polymerase III su 99.4 5.9E-12 1.3E-16 151.2 18.1 186 905-1127 9-223 (491)
110 PRK05201 hslU ATP-dependent pr 99.4 4.3E-12 9.4E-17 148.3 16.5 179 910-1088 16-344 (443)
111 PRK08691 DNA polymerase III su 99.4 8.1E-12 1.8E-16 153.6 18.5 186 905-1127 12-226 (709)
112 PRK14951 DNA polymerase III su 99.4 1.1E-11 2.3E-16 152.5 18.7 186 905-1127 12-231 (618)
113 TIGR01242 26Sp45 26S proteasom 99.4 1.5E-12 3.2E-17 152.0 10.7 128 649-842 203-346 (364)
114 PRK07764 DNA polymerase III su 99.4 1.1E-11 2.3E-16 157.1 18.9 185 905-1126 11-226 (824)
115 PRK07940 DNA polymerase III su 99.4 9.9E-12 2.1E-16 146.3 17.3 187 907-1123 3-216 (394)
116 PRK13341 recombination factor 99.4 1.6E-11 3.6E-16 153.7 19.9 182 905-1127 24-223 (725)
117 TIGR03420 DnaA_homol_Hda DnaA 99.4 3.4E-11 7.3E-16 130.3 19.7 186 905-1127 11-207 (226)
118 PRK12402 replication factor C 99.4 2.1E-11 4.4E-16 139.6 18.8 189 905-1125 11-230 (337)
119 TIGR02397 dnaX_nterm DNA polym 99.4 2.5E-11 5.5E-16 140.1 19.7 186 905-1127 10-224 (355)
120 KOG0989 Replication factor C, 99.3 1.1E-11 2.4E-16 137.9 15.4 183 905-1121 32-231 (346)
121 PRK14957 DNA polymerase III su 99.3 1.9E-11 4.1E-16 148.6 19.0 185 905-1126 12-225 (546)
122 KOG0652 26S proteasome regulat 99.3 1E-12 2.2E-17 142.2 7.1 170 605-843 207-396 (424)
123 PHA02544 44 clamp loader, smal 99.3 2.2E-11 4.8E-16 138.8 18.4 157 905-1093 17-174 (316)
124 COG0465 HflB ATP-dependent Zn 99.3 2E-12 4.3E-17 156.5 10.2 130 649-845 230-376 (596)
125 PRK14969 DNA polymerase III su 99.3 1.5E-11 3.1E-16 150.0 17.7 185 905-1126 12-225 (527)
126 TIGR00382 clpX endopeptidase C 99.3 1E-11 2.3E-16 146.3 15.9 185 906-1090 73-329 (413)
127 PRK10787 DNA-binding ATP-depen 99.3 1.2E-11 2.7E-16 156.4 17.4 171 910-1093 323-507 (784)
128 KOG0727 26S proteasome regulat 99.3 4.6E-12 9.9E-17 136.8 11.4 216 405-842 146-379 (408)
129 PRK05563 DNA polymerase III su 99.3 2.5E-11 5.5E-16 148.9 18.7 184 905-1125 12-224 (559)
130 PRK08903 DnaA regulatory inact 99.3 8.8E-11 1.9E-15 128.0 20.9 178 905-1124 14-202 (227)
131 PRK14963 DNA polymerase III su 99.3 2.5E-11 5.5E-16 146.9 18.3 184 905-1125 10-221 (504)
132 PRK12422 chromosomal replicati 99.3 3.7E-11 8E-16 143.7 19.2 168 945-1126 142-318 (445)
133 PRK14959 DNA polymerase III su 99.3 2.5E-11 5.5E-16 148.6 17.9 181 905-1121 12-221 (624)
134 PRK08084 DNA replication initi 99.3 1E-10 2.3E-15 128.8 20.9 183 905-1124 18-212 (235)
135 PF05673 DUF815: Protein of un 99.3 4.1E-11 8.9E-16 131.4 17.0 189 905-1123 23-243 (249)
136 PRK14952 DNA polymerase III su 99.3 3.9E-11 8.5E-16 147.0 18.8 183 905-1124 9-222 (584)
137 PRK14088 dnaA chromosomal repl 99.3 3.2E-11 7E-16 144.2 17.4 168 945-1125 131-309 (440)
138 KOG0729 26S proteasome regulat 99.3 1.2E-12 2.6E-17 142.0 4.5 134 642-842 251-401 (435)
139 PRK05896 DNA polymerase III su 99.3 5.6E-11 1.2E-15 144.9 19.0 184 905-1125 12-224 (605)
140 PTZ00112 origin recognition co 99.3 8.1E-11 1.8E-15 145.2 20.1 181 909-1111 755-969 (1164)
141 PRK14086 dnaA chromosomal repl 99.3 7.5E-11 1.6E-15 144.0 19.4 167 945-1125 315-492 (617)
142 PRK08727 hypothetical protein; 99.3 2.7E-10 5.9E-15 125.4 21.8 147 945-1113 42-197 (233)
143 COG1221 PspF Transcriptional r 99.3 1.4E-11 3E-16 143.7 12.2 272 822-1132 8-312 (403)
144 PRK06893 DNA replication initi 99.3 1.7E-10 3.6E-15 126.7 20.0 157 945-1123 40-205 (229)
145 TIGR02903 spore_lon_C ATP-depe 99.3 1.2E-10 2.7E-15 144.3 20.8 232 905-1176 150-431 (615)
146 COG1223 Predicted ATPase (AAA+ 99.3 1.5E-11 3.2E-16 133.7 10.7 128 648-841 197-337 (368)
147 PRK06647 DNA polymerase III su 99.3 9E-11 2E-15 143.8 18.5 184 905-1125 12-224 (563)
148 PLN00020 ribulose bisphosphate 99.3 1.6E-11 3.4E-16 141.0 10.9 128 649-841 195-353 (413)
149 PRK14965 DNA polymerase III su 99.3 8.8E-11 1.9E-15 144.7 18.2 181 905-1122 12-221 (576)
150 PRK06305 DNA polymerase III su 99.3 1.5E-10 3.3E-15 138.8 19.6 184 905-1125 13-226 (451)
151 PRK07133 DNA polymerase III su 99.2 1.3E-10 2.9E-15 144.2 18.8 189 905-1124 14-222 (725)
152 PRK14970 DNA polymerase III su 99.2 2E-10 4.2E-15 134.2 19.0 184 905-1125 13-213 (367)
153 CHL00081 chlI Mg-protoporyphyr 99.2 1.4E-10 3E-15 134.4 17.1 168 905-1092 13-232 (350)
154 PRK14953 DNA polymerase III su 99.2 2.2E-10 4.8E-15 138.4 19.3 186 905-1127 12-226 (486)
155 PRK00440 rfc replication facto 99.2 2.6E-10 5.7E-15 129.4 18.7 183 906-1126 14-208 (319)
156 PRK09111 DNA polymerase III su 99.2 1.7E-10 3.7E-15 142.1 18.4 190 905-1125 20-237 (598)
157 COG2812 DnaX DNA polymerase II 99.2 4.9E-11 1.1E-15 143.1 13.3 193 905-1128 12-227 (515)
158 TIGR02640 gas_vesic_GvpN gas v 99.2 1.1E-10 2.3E-15 130.7 15.0 141 945-1092 22-198 (262)
159 COG3829 RocR Transcriptional r 99.2 3.1E-11 6.7E-16 143.1 10.6 202 905-1127 241-477 (560)
160 PRK13407 bchI magnesium chelat 99.2 1.2E-10 2.6E-15 134.3 15.1 165 906-1092 5-216 (334)
161 PRK08451 DNA polymerase III su 99.2 2.5E-10 5.3E-15 138.5 18.4 187 905-1128 10-225 (535)
162 TIGR03689 pup_AAA proteasome A 99.2 4.5E-11 9.7E-16 144.2 11.5 126 649-841 273-412 (512)
163 PRK05642 DNA replication initi 99.2 8.2E-10 1.8E-14 121.7 20.0 158 944-1124 45-211 (234)
164 PRK14955 DNA polymerase III su 99.2 3.5E-10 7.6E-15 133.8 18.2 184 905-1125 12-232 (397)
165 PRK14948 DNA polymerase III su 99.2 2.3E-10 5E-15 141.7 17.3 182 905-1123 12-224 (620)
166 cd00009 AAA The AAA+ (ATPases 99.2 2E-10 4.3E-15 112.6 13.3 124 944-1077 19-150 (151)
167 PRK14087 dnaA chromosomal repl 99.2 4.2E-10 9.1E-15 135.0 18.8 170 945-1129 142-327 (450)
168 PRK06620 hypothetical protein; 99.2 6.7E-10 1.5E-14 121.0 18.2 143 945-1124 45-192 (214)
169 COG2204 AtoC Response regulato 99.2 8.2E-11 1.8E-15 139.5 10.4 206 907-1133 139-378 (464)
170 PF00308 Bac_DnaA: Bacterial d 99.2 9.3E-10 2E-14 120.2 17.8 167 945-1126 35-213 (219)
171 PRK14950 DNA polymerase III su 99.1 7.1E-10 1.5E-14 137.1 18.4 183 905-1124 12-224 (585)
172 PRK14954 DNA polymerase III su 99.1 1.1E-09 2.4E-14 135.3 19.5 175 905-1115 12-223 (620)
173 COG3604 FhlA Transcriptional r 99.1 2.6E-10 5.5E-15 133.9 12.7 201 905-1129 219-456 (550)
174 TIGR01650 PD_CobS cobaltochela 99.1 2.7E-10 5.8E-15 130.4 11.8 143 945-1093 65-234 (327)
175 KOG0651 26S proteasome regulat 99.1 1.6E-10 3.6E-15 128.5 9.6 127 649-841 213-355 (388)
176 TIGR02974 phageshock_pspF psp 99.1 4.4E-10 9.6E-15 129.8 13.5 176 945-1129 23-233 (329)
177 PHA02244 ATPase-like protein 99.1 9.5E-10 2.1E-14 127.3 16.0 130 945-1081 120-263 (383)
178 PRK11608 pspF phage shock prot 99.1 5.1E-10 1.1E-14 129.1 13.2 201 907-1128 4-239 (326)
179 TIGR02030 BchI-ChlI magnesium 99.1 1.6E-09 3.5E-14 125.4 17.2 164 907-1092 2-219 (337)
180 TIGR02442 Cob-chelat-sub cobal 99.1 1E-09 2.2E-14 136.8 16.3 165 907-1093 2-215 (633)
181 PRK14971 DNA polymerase III su 99.1 3.4E-09 7.3E-14 131.4 20.0 183 905-1124 13-225 (614)
182 PRK15424 propionate catabolism 99.1 9E-10 2E-14 134.2 13.5 202 906-1128 216-464 (538)
183 TIGR02329 propionate_PrpR prop 99.1 6.1E-10 1.3E-14 135.6 12.0 202 906-1128 209-449 (526)
184 TIGR01817 nifA Nif-specific re 99.0 5.6E-10 1.2E-14 136.7 11.1 206 905-1131 192-430 (534)
185 COG1474 CDC6 Cdc6-related prot 99.0 8.1E-09 1.8E-13 120.8 20.2 200 910-1132 18-248 (366)
186 KOG0991 Replication factor C, 99.0 2E-09 4.2E-14 116.0 13.6 186 906-1125 24-219 (333)
187 PF00498 FHA: FHA domain; Int 99.0 8.2E-10 1.8E-14 98.2 8.7 67 114-184 1-68 (68)
188 PRK05022 anaerobic nitric oxid 99.0 1.2E-09 2.6E-14 133.1 13.1 204 907-1131 185-422 (509)
189 PRK15429 formate hydrogenlyase 99.0 2.4E-09 5.2E-14 134.9 15.6 205 906-1131 373-611 (686)
190 COG0542 clpA ATP-binding subun 99.0 2.8E-09 6.1E-14 132.5 15.0 182 907-1113 168-372 (786)
191 PRK09087 hypothetical protein; 99.0 6.6E-09 1.4E-13 114.1 15.8 137 945-1112 45-187 (226)
192 PRK05564 DNA polymerase III su 99.0 1E-08 2.2E-13 117.6 18.0 172 907-1115 2-185 (313)
193 COG2607 Predicted ATPase (AAA+ 99.0 1.2E-08 2.6E-13 110.8 17.1 190 905-1124 56-276 (287)
194 PRK10820 DNA-binding transcrip 99.0 2.2E-09 4.7E-14 131.2 13.0 206 905-1131 200-439 (520)
195 PRK11388 DNA-binding transcrip 99.0 1.3E-09 2.8E-14 136.2 11.1 203 906-1129 322-554 (638)
196 COG0714 MoxR-like ATPases [Gen 99.0 2.3E-09 5E-14 123.7 12.3 143 945-1092 44-203 (329)
197 cd00060 FHA Forkhead associate 99.0 1.7E-09 3.7E-14 102.2 8.9 97 94-194 1-101 (102)
198 COG0593 DnaA ATPase involved i 99.0 1.9E-08 4E-13 118.3 19.4 168 944-1126 113-291 (408)
199 PRK09112 DNA polymerase III su 99.0 1.2E-08 2.6E-13 119.0 17.4 188 905-1124 19-243 (351)
200 COG1224 TIP49 DNA helicase TIP 98.9 3E-08 6.5E-13 112.6 18.6 128 1004-1175 292-432 (450)
201 PF07728 AAA_5: AAA domain (dy 98.9 3.2E-10 6.8E-15 114.0 1.8 119 946-1070 1-139 (139)
202 smart00382 AAA ATPases associa 98.9 6.1E-09 1.3E-13 100.7 10.6 127 945-1079 3-147 (148)
203 PRK07471 DNA polymerase III su 98.9 1.8E-08 4E-13 118.0 16.3 181 905-1118 15-236 (365)
204 COG1219 ClpX ATP-dependent pro 98.9 3E-09 6.4E-14 119.0 8.4 115 907-1021 58-180 (408)
205 TIGR02031 BchD-ChlD magnesium 98.9 1.2E-08 2.6E-13 126.3 14.5 144 945-1093 17-175 (589)
206 PF01078 Mg_chelatase: Magnesi 98.9 1E-09 2.2E-14 118.2 4.5 46 907-968 1-46 (206)
207 smart00350 MCM minichromosome 98.9 3.2E-08 6.9E-13 120.8 17.4 175 910-1094 204-402 (509)
208 TIGR00678 holB DNA polymerase 98.9 2.7E-08 5.8E-13 105.6 14.6 144 943-1113 13-184 (188)
209 TIGR00764 lon_rel lon-related 98.9 3.7E-08 8E-13 122.3 18.0 50 906-971 15-64 (608)
210 KOG0745 Putative ATP-dependent 98.9 3.5E-08 7.6E-13 114.1 16.0 95 945-1039 227-336 (564)
211 TIGR03015 pepcterm_ATPase puta 98.9 8.4E-08 1.8E-12 106.7 18.9 192 945-1176 44-267 (269)
212 COG1220 HslU ATP-dependent pro 98.9 2.6E-08 5.6E-13 112.3 14.3 85 1004-1089 251-346 (444)
213 PF00158 Sigma54_activat: Sigm 98.9 2E-09 4.3E-14 113.2 5.3 128 911-1058 1-143 (168)
214 PRK07399 DNA polymerase III su 98.9 2.3E-08 5E-13 114.9 14.2 180 907-1119 2-220 (314)
215 PF07724 AAA_2: AAA domain (Cd 98.8 1.1E-08 2.3E-13 108.0 10.3 114 943-1059 2-130 (171)
216 COG1239 ChlI Mg-chelatase subu 98.8 5.2E-08 1.1E-12 113.6 16.1 169 906-1094 14-234 (423)
217 COG0470 HolB ATPase involved i 98.8 1.7E-08 3.6E-13 114.8 11.7 149 910-1089 2-178 (325)
218 KOG1969 DNA replication checkp 98.8 4.4E-08 9.5E-13 119.0 14.9 168 942-1126 323-512 (877)
219 PF07726 AAA_3: ATPase family 98.8 2.4E-09 5.2E-14 107.2 3.5 116 946-1071 1-130 (131)
220 PRK04132 replication factor C 98.8 4E-08 8.6E-13 124.6 15.2 161 942-1126 562-736 (846)
221 TIGR02915 PEP_resp_reg putativ 98.8 1.6E-08 3.6E-13 120.7 11.2 202 909-1131 139-374 (445)
222 PRK11331 5-methylcytosine-spec 98.8 4.8E-08 1E-12 115.9 14.3 142 909-1078 175-357 (459)
223 TIGR00368 Mg chelatase-related 98.8 1.1E-07 2.3E-12 115.5 17.5 153 906-1082 189-394 (499)
224 PRK13531 regulatory ATPase Rav 98.8 1.8E-07 3.9E-12 112.0 18.3 160 910-1091 21-193 (498)
225 PF05621 TniB: Bacterial TniB 98.7 3.1E-07 6.7E-12 104.1 18.3 178 945-1133 62-273 (302)
226 PRK05707 DNA polymerase III su 98.7 1.1E-07 2.4E-12 110.0 15.0 150 943-1115 21-198 (328)
227 PF06068 TIP49: TIP49 C-termin 98.7 2.1E-07 4.6E-12 107.3 16.5 90 1004-1111 279-381 (398)
228 PRK08058 DNA polymerase III su 98.7 2.2E-07 4.7E-12 107.7 16.3 149 907-1090 3-180 (329)
229 PRK10923 glnG nitrogen regulat 98.7 8.6E-08 1.9E-12 115.4 13.5 202 908-1130 137-372 (469)
230 KOG2035 Replication factor C, 98.7 6.1E-07 1.3E-11 99.3 16.6 183 906-1119 10-227 (351)
231 PRK11361 acetoacetate metaboli 98.6 1.9E-07 4E-12 111.9 13.5 176 945-1129 167-376 (457)
232 PRK15115 response regulator Gl 98.6 4.1E-07 8.9E-12 108.8 13.8 176 945-1129 158-367 (444)
233 TIGR00602 rad24 checkpoint pro 98.6 7.4E-07 1.6E-11 110.7 15.7 195 905-1121 80-324 (637)
234 KOG2227 Pre-initiation complex 98.6 3.8E-06 8.3E-11 98.8 20.4 237 910-1180 151-420 (529)
235 PRK06871 DNA polymerase III su 98.6 1.4E-06 2.9E-11 100.8 16.7 164 914-1115 7-198 (325)
236 KOG0615 Serine/threonine prote 98.5 8.8E-08 1.9E-12 110.5 6.6 114 89-203 41-165 (475)
237 KOG1514 Origin recognition com 98.5 2.3E-06 4.9E-11 104.5 18.7 228 911-1179 398-659 (767)
238 PF13177 DNA_pol3_delta2: DNA 98.5 4.7E-07 1E-11 94.6 11.2 133 913-1078 1-160 (162)
239 PRK08116 hypothetical protein; 98.5 4.6E-07 1E-11 102.1 11.7 122 945-1081 115-251 (268)
240 PRK07993 DNA polymerase III su 98.5 1.9E-06 4.2E-11 100.0 16.9 152 942-1117 22-201 (334)
241 COG3283 TyrR Transcriptional r 98.5 5E-07 1.1E-11 102.6 11.0 202 905-1127 200-430 (511)
242 TIGR01818 ntrC nitrogen regula 98.5 4.1E-07 8.9E-12 109.3 11.1 202 910-1132 135-370 (463)
243 PRK08769 DNA polymerase III su 98.5 2.9E-06 6.2E-11 97.9 16.2 171 914-1119 9-207 (319)
244 smart00763 AAA_PrkA PrkA AAA d 98.5 2E-06 4.3E-11 100.0 14.9 63 907-977 48-118 (361)
245 PRK12377 putative replication 98.5 8.8E-07 1.9E-11 98.8 11.5 108 894-1015 59-175 (248)
246 PTZ00111 DNA replication licen 98.5 6.1E-07 1.3E-11 113.6 11.3 175 910-1093 451-658 (915)
247 PRK09862 putative ATP-dependen 98.4 3.5E-06 7.6E-11 102.4 16.8 153 906-1082 188-391 (506)
248 PRK06964 DNA polymerase III su 98.4 2.6E-06 5.6E-11 99.1 14.5 133 942-1091 19-203 (342)
249 PRK13765 ATP-dependent proteas 98.4 1.9E-06 4.2E-11 107.2 14.3 48 906-969 28-75 (637)
250 PRK10365 transcriptional regul 98.4 2.4E-06 5.2E-11 101.9 13.2 175 945-1128 163-371 (441)
251 TIGR03354 VI_FHA type VI secre 98.4 5.9E-07 1.3E-11 106.3 7.9 82 105-191 17-102 (396)
252 PRK07952 DNA replication prote 98.4 3.2E-06 6.9E-11 94.2 12.9 108 894-1015 57-174 (244)
253 PRK06090 DNA polymerase III su 98.4 1E-05 2.3E-10 93.3 17.4 144 914-1090 8-178 (319)
254 KOG1051 Chaperone HSP104 and r 98.3 1.1E-05 2.4E-10 102.3 17.7 127 910-1058 563-710 (898)
255 COG0606 Predicted ATPase with 98.3 2.7E-07 5.8E-12 109.0 3.2 47 905-967 175-221 (490)
256 PF14532 Sigma54_activ_2: Sigm 98.3 4E-07 8.6E-12 92.2 3.9 106 945-1080 22-137 (138)
257 PF01637 Arch_ATPase: Archaeal 98.3 1.8E-06 4E-11 92.5 8.2 180 912-1115 2-229 (234)
258 KOG0990 Replication factor C, 98.3 2.7E-06 5.8E-11 96.1 9.1 158 905-1096 37-207 (360)
259 PF00004 AAA: ATPase family as 98.2 1.7E-06 3.7E-11 85.0 6.4 57 649-708 45-113 (132)
260 PRK13406 bchD magnesium chelat 98.2 7.3E-06 1.6E-10 101.4 13.1 131 945-1083 26-173 (584)
261 KOG1942 DNA helicase, TBP-inte 98.2 1.6E-05 3.4E-10 88.7 13.7 91 1003-1111 296-400 (456)
262 PRK08181 transposase; Validate 98.2 3.8E-06 8.3E-11 94.8 9.1 69 945-1015 107-179 (269)
263 KOG2680 DNA helicase TIP49, TB 98.2 3.4E-05 7.4E-10 86.4 15.1 129 1004-1175 289-429 (454)
264 PRK08699 DNA polymerase III su 98.2 9.9E-06 2.1E-10 93.9 11.5 132 942-1090 19-183 (325)
265 PF03215 Rad17: Rad17 cell cyc 98.1 4.3E-05 9.4E-10 93.5 16.9 194 906-1121 16-264 (519)
266 PF13173 AAA_14: AAA domain 98.1 8.8E-06 1.9E-10 81.4 8.9 69 945-1015 3-73 (128)
267 PRK06835 DNA replication prote 98.1 8.8E-06 1.9E-10 94.4 8.7 111 945-1070 184-305 (329)
268 COG3284 AcoR Transcriptional a 98.1 9E-06 2E-10 99.0 8.7 176 946-1128 338-539 (606)
269 PF13401 AAA_22: AAA domain; P 98.0 2.5E-05 5.5E-10 77.1 9.8 72 945-1016 5-100 (131)
270 PRK06526 transposase; Provisio 98.0 8.7E-06 1.9E-10 91.3 7.0 70 944-1015 98-171 (254)
271 PRK08939 primosomal protein Dn 98.0 2.8E-05 6E-10 89.5 11.0 70 944-1015 156-229 (306)
272 PF01695 IstB_IS21: IstB-like 98.0 6.4E-06 1.4E-10 87.6 5.1 70 943-1014 46-119 (178)
273 COG1241 MCM2 Predicted ATPase 98.0 5.2E-05 1.1E-09 94.5 13.4 171 910-1095 287-486 (682)
274 PLN02927 antheraxanthin epoxid 98.0 1.3E-05 2.8E-10 100.4 8.2 84 103-191 545-642 (668)
275 COG1484 DnaC DNA replication p 97.9 3.7E-05 8E-10 86.3 10.3 70 944-1015 105-179 (254)
276 PF05729 NACHT: NACHT domain 97.9 6.6E-05 1.4E-09 76.4 10.9 140 946-1094 2-165 (166)
277 PRK09183 transposase/IS protei 97.9 2.5E-05 5.5E-10 87.8 8.5 71 944-1015 102-176 (259)
278 PRK06921 hypothetical protein; 97.9 2.4E-05 5.2E-10 88.3 7.9 67 945-1014 118-188 (266)
279 cd01120 RecA-like_NTPases RecA 97.9 5.8E-05 1.3E-09 76.2 9.7 71 947-1017 2-99 (165)
280 KOG0742 AAA+-type ATPase [Post 97.9 5E-05 1.1E-09 87.9 10.0 140 649-834 430-587 (630)
281 smart00240 FHA Forkhead associ 97.9 2.2E-05 4.8E-10 65.9 5.1 50 114-167 1-52 (52)
282 PF00493 MCM: MCM2/3/5 family 97.8 4.9E-06 1.1E-10 96.6 0.5 175 910-1095 25-224 (331)
283 PF12775 AAA_7: P-loop contain 97.8 3.6E-05 7.9E-10 87.2 7.2 139 945-1094 34-195 (272)
284 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00012 2.6E-09 81.1 11.0 130 945-1087 33-175 (231)
285 PRK05917 DNA polymerase III su 97.8 0.00025 5.4E-09 81.0 13.6 121 942-1079 17-154 (290)
286 COG4650 RtcR Sigma54-dependent 97.8 2.9E-05 6.2E-10 86.5 5.9 132 946-1087 210-367 (531)
287 PF00931 NB-ARC: NB-ARC domain 97.8 0.00023 5E-09 79.9 12.8 157 943-1121 18-202 (287)
288 KOG0478 DNA replication licens 97.7 0.0003 6.6E-09 86.1 12.5 175 910-1092 430-626 (804)
289 KOG0744 AAA+-type ATPase [Post 97.6 5.4E-05 1.2E-09 85.8 5.0 75 402-481 130-204 (423)
290 PRK07276 DNA polymerase III su 97.6 0.0015 3.3E-08 74.7 16.8 122 942-1083 22-166 (290)
291 KOG0480 DNA replication licens 97.6 0.00042 9E-09 84.3 12.5 202 910-1126 346-571 (764)
292 COG1618 Predicted nucleotide k 97.6 0.00051 1.1E-08 71.7 10.7 25 944-968 5-29 (179)
293 COG1716 FOG: FHA domain [Signa 97.5 0.00023 5E-09 75.5 8.1 79 103-188 80-159 (191)
294 PRK05818 DNA polymerase III su 97.5 0.001 2.2E-08 74.8 13.1 121 942-1079 5-147 (261)
295 KOG2228 Origin recognition com 97.5 0.00034 7.5E-09 80.0 9.3 161 910-1092 25-219 (408)
296 PRK07132 DNA polymerase III su 97.5 0.0019 4.1E-08 74.3 15.4 125 944-1090 18-160 (299)
297 KOG0482 DNA replication licens 97.5 0.00034 7.4E-09 83.0 9.2 210 910-1132 343-592 (721)
298 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0045 9.7E-08 74.9 18.3 199 906-1127 79-318 (634)
299 COG3267 ExeA Type II secretory 97.4 0.0036 7.9E-08 69.8 15.2 174 946-1131 53-255 (269)
300 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00047 1E-08 81.2 9.0 103 941-1059 59-168 (362)
301 PF00910 RNA_helicase: RNA hel 97.3 0.00044 9.5E-09 67.4 6.5 23 947-969 1-23 (107)
302 PF14516 AAA_35: AAA-like doma 97.3 0.0024 5.2E-08 74.5 13.7 164 943-1114 30-233 (331)
303 cd01124 KaiC KaiC is a circadi 97.3 0.0012 2.7E-08 69.3 10.3 71 947-1017 2-109 (187)
304 TIGR02237 recomb_radB DNA repa 97.3 0.001 2.2E-08 71.7 9.5 73 945-1017 13-111 (209)
305 PF05707 Zot: Zonular occluden 97.2 0.00086 1.9E-08 72.1 7.7 121 947-1077 3-144 (193)
306 PLN03210 Resistant to P. syrin 97.2 0.0041 8.9E-08 83.6 15.3 53 906-970 181-233 (1153)
307 TIGR01618 phage_P_loop phage n 97.2 0.0011 2.3E-08 73.2 8.1 75 941-1017 9-95 (220)
308 PF13207 AAA_17: AAA domain; P 97.1 0.00038 8.3E-09 68.1 4.1 31 947-977 2-32 (121)
309 KOG0477 DNA replication licens 97.1 0.00058 1.3E-08 82.7 6.2 154 910-1076 450-629 (854)
310 PHA00729 NTP-binding motif con 97.1 0.00091 2E-08 73.8 7.2 26 945-970 18-43 (226)
311 KOG2170 ATPase of the AAA+ sup 97.1 0.0067 1.5E-07 68.9 14.0 129 911-1058 84-224 (344)
312 KOG1968 Replication factor C, 97.1 0.00097 2.1E-08 85.7 8.1 162 947-1127 360-534 (871)
313 COG3456 Predicted component of 97.1 0.00055 1.2E-08 80.1 5.4 76 109-194 23-101 (430)
314 TIGR00763 lon ATP-dependent pr 97.1 0.0065 1.4E-07 78.5 15.5 34 452-487 347-380 (775)
315 COG5271 MDN1 AAA ATPase contai 97.0 0.0016 3.4E-08 85.1 8.9 141 945-1093 1544-1704(4600)
316 KOG1051 Chaperone HSP104 and r 97.0 0.0033 7.2E-08 80.6 12.0 139 945-1094 209-365 (898)
317 PRK08118 topology modulation p 97.0 0.0013 2.8E-08 69.3 6.9 33 945-977 2-34 (167)
318 PHA02624 large T antigen; Prov 97.0 0.00075 1.6E-08 83.0 5.8 119 945-1078 432-561 (647)
319 cd01121 Sms Sms (bacterial rad 97.0 0.003 6.5E-08 74.8 10.7 96 943-1038 81-195 (372)
320 PF03266 NTPase_1: NTPase; In 97.0 0.00044 9.5E-09 73.1 3.3 23 946-968 1-23 (168)
321 PRK11823 DNA repair protein Ra 97.0 0.0031 6.8E-08 76.4 10.8 96 943-1038 79-193 (446)
322 KOG1881 Anion exchanger adapto 96.9 0.0019 4.2E-08 79.4 8.3 87 111-200 176-271 (793)
323 PRK07261 topology modulation p 96.9 0.002 4.3E-08 68.0 7.3 33 946-978 2-34 (171)
324 PRK00771 signal recognition pa 96.9 0.023 5.1E-07 68.7 16.6 199 943-1176 94-333 (437)
325 PF13191 AAA_16: AAA ATPase do 96.9 0.0024 5.3E-08 66.5 7.3 59 911-980 2-63 (185)
326 PRK09361 radB DNA repair and r 96.8 0.0044 9.5E-08 67.8 9.4 36 943-978 22-60 (225)
327 PRK00131 aroK shikimate kinase 96.8 0.0012 2.6E-08 68.3 4.6 34 943-976 3-36 (175)
328 TIGR02012 tigrfam_recA protein 96.8 0.006 1.3E-07 70.8 10.5 74 945-1018 56-148 (321)
329 PRK04841 transcriptional regul 96.8 0.018 3.9E-07 75.1 15.7 153 945-1115 33-220 (903)
330 PRK15455 PrkA family serine pr 96.8 0.002 4.3E-08 79.1 6.4 63 907-977 74-137 (644)
331 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0061 1.3E-07 69.0 9.6 93 906-1013 57-159 (264)
332 PRK08533 flagellar accessory p 96.7 0.011 2.5E-07 65.4 11.4 74 943-1016 23-130 (230)
333 cd00983 recA RecA is a bacter 96.6 0.0076 1.7E-07 70.1 9.6 74 945-1018 56-148 (325)
334 cd01131 PilT Pilus retraction 96.6 0.0041 8.8E-08 67.2 6.9 67 946-1012 3-83 (198)
335 CHL00181 cbbX CbbX; Provisiona 96.6 0.01 2.2E-07 68.0 10.4 127 666-845 124-260 (287)
336 PRK13695 putative NTPase; Prov 96.5 0.011 2.4E-07 62.2 9.5 23 946-968 2-24 (174)
337 PF13671 AAA_33: AAA domain; P 96.5 0.0045 9.8E-08 62.1 6.3 31 947-979 2-32 (143)
338 PRK04296 thymidine kinase; Pro 96.5 0.018 3.9E-07 61.9 10.8 69 946-1015 4-90 (190)
339 COG1485 Predicted ATPase [Gene 96.5 0.022 4.7E-07 66.3 11.9 100 942-1058 63-170 (367)
340 PRK09376 rho transcription ter 96.5 0.0068 1.5E-07 71.8 8.0 72 945-1016 170-269 (416)
341 PRK13947 shikimate kinase; Pro 96.5 0.0027 5.9E-08 66.1 4.2 31 946-976 3-33 (171)
342 PRK03839 putative kinase; Prov 96.4 0.0027 5.8E-08 67.0 4.2 31 946-976 2-32 (180)
343 COG1373 Predicted ATPase (AAA+ 96.4 0.018 3.9E-07 68.9 11.5 121 946-1086 39-161 (398)
344 cd01394 radB RadB. The archaea 96.4 0.015 3.3E-07 63.2 10.0 34 945-978 20-56 (218)
345 PF13604 AAA_30: AAA domain; P 96.4 0.0085 1.9E-07 64.7 7.5 34 945-978 19-55 (196)
346 PF06309 Torsin: Torsin; Inte 96.3 0.015 3.2E-07 58.9 8.5 52 910-968 26-77 (127)
347 PHA02774 E1; Provisional 96.3 0.017 3.7E-07 71.2 10.7 33 945-977 435-468 (613)
348 PRK13948 shikimate kinase; Pro 96.3 0.004 8.7E-08 66.7 4.6 36 941-976 7-42 (182)
349 cd00464 SK Shikimate kinase (S 96.3 0.0037 8E-08 63.6 4.1 31 946-976 1-31 (154)
350 PRK00625 shikimate kinase; Pro 96.3 0.0036 7.9E-08 66.5 4.2 31 946-976 2-32 (173)
351 PRK05800 cobU adenosylcobinami 96.3 0.025 5.5E-07 60.0 10.3 68 946-1017 3-90 (170)
352 PF00437 T2SE: Type II/IV secr 96.3 0.0065 1.4E-07 68.3 6.3 96 906-1013 101-207 (270)
353 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.028 6.2E-07 62.3 11.2 39 938-977 16-57 (237)
354 cd00544 CobU Adenosylcobinamid 96.2 0.021 4.6E-07 60.6 9.5 71 947-1019 2-89 (169)
355 TIGR00416 sms DNA repair prote 96.2 0.02 4.2E-07 69.8 10.5 75 943-1017 93-184 (454)
356 KOG3347 Predicted nucleotide k 96.2 0.0034 7.4E-08 64.8 3.4 32 945-976 8-39 (176)
357 cd01128 rho_factor Transcripti 96.2 0.036 7.8E-07 62.4 11.6 26 945-970 17-42 (249)
358 TIGR02880 cbbX_cfxQ probable R 96.2 0.036 7.9E-07 63.4 11.9 128 665-845 122-259 (284)
359 PRK14532 adenylate kinase; Pro 96.2 0.0043 9.4E-08 65.8 4.1 30 946-975 2-31 (188)
360 PRK09354 recA recombinase A; P 96.2 0.025 5.5E-07 66.4 10.5 73 945-1017 61-152 (349)
361 KOG0479 DNA replication licens 96.2 0.017 3.7E-07 70.1 9.1 172 910-1093 302-499 (818)
362 PRK06217 hypothetical protein; 96.2 0.0049 1.1E-07 65.5 4.3 32 945-976 2-33 (183)
363 PRK06067 flagellar accessory p 96.2 0.045 9.6E-07 60.4 11.9 74 943-1016 24-133 (234)
364 KOG2543 Origin recognition com 96.1 0.047 1E-06 64.0 12.3 58 911-979 8-65 (438)
365 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0045 9.8E-08 65.1 3.9 33 947-981 2-34 (183)
366 PRK13949 shikimate kinase; Pro 96.1 0.0046 1E-07 65.3 3.9 32 945-976 2-33 (169)
367 COG5245 DYN1 Dynein, heavy cha 96.1 0.026 5.7E-07 74.1 11.0 138 944-1094 1494-1660(3164)
368 PRK06762 hypothetical protein; 96.1 0.013 2.7E-07 61.0 7.0 37 945-981 3-39 (166)
369 cd00984 DnaB_C DnaB helicase C 96.1 0.036 7.8E-07 61.0 11.0 36 942-977 11-50 (242)
370 PRK00080 ruvB Holliday junctio 96.1 0.066 1.4E-06 62.2 13.6 59 412-484 23-81 (328)
371 COG2804 PulE Type II secretory 96.1 0.014 3E-07 70.7 8.2 91 904-1013 233-337 (500)
372 KOG2383 Predicted ATPase [Gene 96.1 0.021 4.6E-07 67.1 9.2 159 941-1124 111-295 (467)
373 PRK14974 cell division protein 96.1 0.039 8.4E-07 64.7 11.5 35 944-978 140-177 (336)
374 PRK05973 replicative DNA helic 96.1 0.052 1.1E-06 60.7 12.0 37 942-978 62-101 (237)
375 TIGR02858 spore_III_AA stage I 96.1 0.012 2.7E-07 66.8 7.1 69 945-1013 112-204 (270)
376 PRK14722 flhF flagellar biosyn 96.1 0.016 3.4E-07 68.7 8.2 24 945-968 138-161 (374)
377 PF06745 KaiC: KaiC; InterPro 96.1 0.04 8.6E-07 60.3 10.9 73 943-1015 18-127 (226)
378 PF04665 Pox_A32: Poxvirus A32 96.0 0.066 1.4E-06 59.9 12.6 131 944-1091 13-169 (241)
379 PRK13764 ATPase; Provisional 96.0 0.017 3.7E-07 72.1 8.8 68 945-1013 258-334 (602)
380 PRK10867 signal recognition pa 96.0 0.17 3.7E-06 61.4 16.9 73 943-1015 99-195 (433)
381 PRK14531 adenylate kinase; Pro 96.0 0.0064 1.4E-07 64.7 4.4 31 945-975 3-33 (183)
382 TIGR02525 plasmid_TraJ plasmid 96.0 0.02 4.3E-07 68.0 8.8 68 946-1013 151-235 (372)
383 cd02020 CMPK Cytidine monophos 96.0 0.006 1.3E-07 61.4 3.9 30 947-976 2-31 (147)
384 TIGR02688 conserved hypothetic 96.0 0.0078 1.7E-07 71.8 5.4 59 945-1015 210-272 (449)
385 cd01122 GP4d_helicase GP4d_hel 96.0 0.057 1.2E-06 60.6 12.0 35 943-977 29-67 (271)
386 cd03283 ABC_MutS-like MutS-lik 96.0 0.032 6.8E-07 60.6 9.6 69 945-1013 26-115 (199)
387 PRK10536 hypothetical protein; 96.0 0.055 1.2E-06 61.1 11.7 44 908-967 54-97 (262)
388 cd00046 DEXDc DEAD-like helica 96.0 0.014 3.1E-07 56.3 6.3 23 946-968 2-24 (144)
389 TIGR02533 type_II_gspE general 96.0 0.026 5.6E-07 69.3 9.9 93 905-1013 218-321 (486)
390 PF07693 KAP_NTPase: KAP famil 96.0 0.28 6E-06 56.3 17.8 36 942-977 18-59 (325)
391 cd01428 ADK Adenylate kinase ( 96.0 0.006 1.3E-07 64.6 3.9 29 947-975 2-30 (194)
392 COG5271 MDN1 AAA ATPase contai 96.0 0.024 5.2E-07 74.9 9.5 136 946-1092 890-1047(4600)
393 KOG0481 DNA replication licens 96.0 0.045 9.7E-07 65.8 11.2 171 910-1091 332-527 (729)
394 PRK06581 DNA polymerase III su 95.9 0.091 2E-06 58.8 12.9 145 944-1109 15-176 (263)
395 COG3854 SpoIIIAA ncharacterize 95.9 0.02 4.3E-07 63.1 7.7 71 945-1015 138-230 (308)
396 TIGR02782 TrbB_P P-type conjug 95.9 0.023 5.1E-07 65.5 8.8 69 945-1013 133-214 (299)
397 TIGR01420 pilT_fam pilus retra 95.9 0.014 3E-07 68.5 7.1 69 945-1013 123-205 (343)
398 PRK12723 flagellar biosynthesi 95.9 0.067 1.4E-06 63.9 12.7 129 944-1086 174-329 (388)
399 cd02021 GntK Gluconate kinase 95.9 0.0068 1.5E-07 61.8 3.9 29 947-975 2-30 (150)
400 PRK14530 adenylate kinase; Pro 95.9 0.0074 1.6E-07 65.8 4.4 30 946-975 5-34 (215)
401 PF10236 DAP3: Mitochondrial r 95.9 0.35 7.7E-06 56.1 18.2 127 992-1119 142-307 (309)
402 PRK08233 hypothetical protein; 95.9 0.044 9.5E-07 57.3 9.8 33 945-977 4-37 (182)
403 cd01393 recA_like RecA is a b 95.9 0.036 7.9E-07 60.3 9.5 37 943-979 18-63 (226)
404 smart00487 DEXDc DEAD-like hel 95.9 0.047 1E-06 56.1 9.9 24 945-968 25-49 (201)
405 PRK10436 hypothetical protein; 95.8 0.031 6.8E-07 68.1 9.6 93 906-1013 195-297 (462)
406 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.06 1.3E-06 60.8 11.2 35 943-977 35-72 (259)
407 TIGR02881 spore_V_K stage V sp 95.8 0.077 1.7E-06 59.7 12.0 33 444-478 34-66 (261)
408 PTZ00088 adenylate kinase 1; P 95.8 0.0086 1.9E-07 66.5 4.2 32 945-976 7-38 (229)
409 COG0703 AroK Shikimate kinase 95.8 0.0077 1.7E-07 63.9 3.5 32 945-976 3-34 (172)
410 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.041 9E-07 60.3 9.3 36 944-979 19-63 (235)
411 PRK03731 aroL shikimate kinase 95.7 0.011 2.3E-07 61.8 4.4 32 945-976 3-34 (171)
412 TIGR01313 therm_gnt_kin carboh 95.7 0.0081 1.8E-07 62.2 3.4 28 947-974 1-28 (163)
413 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.074 1.6E-06 58.4 10.9 21 945-965 30-50 (213)
414 PF00448 SRP54: SRP54-type pro 95.6 0.056 1.2E-06 58.7 9.7 108 944-1063 1-131 (196)
415 PRK06547 hypothetical protein; 95.6 0.012 2.5E-07 62.6 4.4 34 943-976 14-47 (172)
416 cd00227 CPT Chloramphenicol (C 95.6 0.01 2.2E-07 62.6 3.7 34 945-978 3-36 (175)
417 TIGR02538 type_IV_pilB type IV 95.6 0.039 8.5E-07 69.0 9.4 93 906-1013 293-395 (564)
418 KOG3928 Mitochondrial ribosome 95.6 0.27 5.8E-06 58.4 15.3 50 1073-1123 405-458 (461)
419 PRK14528 adenylate kinase; Pro 95.6 0.012 2.7E-07 62.9 4.3 31 945-975 2-32 (186)
420 cd02027 APSK Adenosine 5'-phos 95.6 0.032 7E-07 57.6 7.2 33 947-979 2-37 (149)
421 PRK13900 type IV secretion sys 95.6 0.035 7.6E-07 65.0 8.3 69 945-1013 161-245 (332)
422 TIGR01425 SRP54_euk signal rec 95.6 0.32 6.9E-06 58.9 16.5 73 943-1015 99-194 (429)
423 PRK13946 shikimate kinase; Pro 95.5 0.011 2.4E-07 63.0 3.8 32 945-976 11-42 (184)
424 TIGR01360 aden_kin_iso1 adenyl 95.5 0.013 2.8E-07 61.6 4.2 31 945-975 4-34 (188)
425 PRK04328 hypothetical protein; 95.5 0.1 2.2E-06 58.5 11.6 35 943-977 22-59 (249)
426 PRK02496 adk adenylate kinase; 95.5 0.013 2.7E-07 62.2 4.1 31 945-975 2-32 (184)
427 PF05272 VirE: Virulence-assoc 95.5 0.03 6.5E-07 60.9 7.0 111 945-1077 53-168 (198)
428 PRK05057 aroK shikimate kinase 95.5 0.014 3.1E-07 61.7 4.3 33 945-977 5-37 (172)
429 COG2909 MalT ATP-dependent tra 95.5 0.15 3.2E-06 65.1 13.5 153 945-1116 38-229 (894)
430 TIGR00959 ffh signal recogniti 95.4 0.68 1.5E-05 56.2 18.9 73 943-1015 98-194 (428)
431 PRK08154 anaerobic benzoate ca 95.4 0.023 5.1E-07 65.7 6.3 36 941-976 130-165 (309)
432 PLN02200 adenylate kinase fami 95.4 0.016 3.5E-07 64.5 4.8 38 943-982 42-79 (234)
433 COG0563 Adk Adenylate kinase a 95.4 0.015 3.2E-07 62.2 4.2 28 946-973 2-29 (178)
434 PF13479 AAA_24: AAA domain 95.4 0.06 1.3E-06 58.9 9.0 20 945-964 4-23 (213)
435 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.13 2.8E-06 56.3 11.6 36 943-978 15-53 (224)
436 cd01130 VirB11-like_ATPase Typ 95.4 0.036 7.7E-07 59.2 7.0 69 945-1013 26-110 (186)
437 PRK00279 adk adenylate kinase; 95.4 0.015 3.3E-07 63.3 4.3 30 946-975 2-31 (215)
438 COG4088 Predicted nucleotide k 95.4 0.061 1.3E-06 58.6 8.5 23 946-968 3-25 (261)
439 TIGR01351 adk adenylate kinase 95.4 0.014 3E-07 63.4 3.9 29 947-975 2-30 (210)
440 cd03243 ABC_MutS_homologs The 95.3 0.094 2E-06 56.7 10.2 21 945-965 30-50 (202)
441 COG4619 ABC-type uncharacteriz 95.3 0.051 1.1E-06 57.6 7.6 27 942-968 27-53 (223)
442 COG1102 Cmk Cytidylate kinase 95.3 0.015 3.2E-07 61.1 3.6 29 946-974 2-30 (179)
443 PF13238 AAA_18: AAA domain; P 95.3 0.014 3E-07 57.1 3.3 22 947-968 1-22 (129)
444 cd03216 ABC_Carb_Monos_I This 95.3 0.063 1.4E-06 56.1 8.3 72 943-1014 25-111 (163)
445 COG1066 Sms Predicted ATP-depe 95.2 0.1 2.2E-06 62.0 10.6 96 943-1038 92-205 (456)
446 PF13481 AAA_25: AAA domain; P 95.2 0.067 1.4E-06 56.7 8.5 73 946-1018 34-156 (193)
447 TIGR03574 selen_PSTK L-seryl-t 95.2 0.033 7.1E-07 62.1 6.4 34 947-980 2-38 (249)
448 smart00534 MUTSac ATPase domai 95.2 0.13 2.8E-06 55.0 10.7 19 947-965 2-20 (185)
449 PRK13894 conjugal transfer ATP 95.2 0.064 1.4E-06 62.5 8.9 69 945-1013 149-229 (319)
450 PRK13833 conjugal transfer pro 95.2 0.065 1.4E-06 62.5 8.9 69 945-1013 145-225 (323)
451 cd03280 ABC_MutS2 MutS2 homolo 95.2 0.12 2.5E-06 55.9 10.2 21 945-965 29-49 (200)
452 cd03115 SRP The signal recogni 95.1 0.078 1.7E-06 55.6 8.5 32 947-978 3-37 (173)
453 PRK10416 signal recognition pa 95.1 0.29 6.3E-06 57.1 14.0 35 943-977 113-150 (318)
454 TIGR00064 ftsY signal recognit 95.1 0.43 9.3E-06 54.5 15.0 36 943-978 71-109 (272)
455 PF01583 APS_kinase: Adenylyls 95.1 0.045 9.8E-07 57.4 6.5 67 945-1011 3-81 (156)
456 PF06414 Zeta_toxin: Zeta toxi 95.1 0.058 1.3E-06 58.2 7.5 40 944-983 15-55 (199)
457 TIGR00767 rho transcription te 95.1 0.064 1.4E-06 64.0 8.4 25 945-969 169-193 (415)
458 PRK04040 adenylate kinase; Pro 95.1 0.023 5E-07 61.2 4.4 30 944-973 2-33 (188)
459 PRK14527 adenylate kinase; Pro 95.0 0.021 4.5E-07 61.1 3.8 32 944-975 6-37 (191)
460 TIGR02655 circ_KaiC circadian 95.0 0.13 2.8E-06 63.3 11.0 74 943-1016 262-366 (484)
461 TIGR02788 VirB11 P-type DNA tr 95.0 0.037 7.9E-07 64.0 6.0 70 944-1013 144-228 (308)
462 PRK04182 cytidylate kinase; Pr 95.0 0.023 5E-07 59.2 4.0 29 946-974 2-30 (180)
463 PF08433 KTI12: Chromatin asso 95.0 0.068 1.5E-06 60.9 8.0 68 947-1015 4-82 (270)
464 COG1936 Predicted nucleotide k 94.9 0.018 3.9E-07 61.1 3.0 30 946-976 2-31 (180)
465 PRK06696 uridine kinase; Valid 94.9 0.06 1.3E-06 59.1 7.2 38 944-981 22-62 (223)
466 PRK11889 flhF flagellar biosyn 94.9 0.28 6.1E-06 58.7 13.0 34 944-977 241-277 (436)
467 PRK13851 type IV secretion sys 94.9 0.034 7.4E-07 65.3 5.5 70 944-1013 162-246 (344)
468 PF09848 DUF2075: Uncharacteri 94.9 0.037 8.1E-07 65.0 5.8 23 946-968 3-25 (352)
469 PLN02674 adenylate kinase 94.8 0.027 5.9E-07 63.2 4.4 33 943-975 30-62 (244)
470 PRK09519 recA DNA recombinatio 94.8 0.14 3E-06 65.9 11.0 75 943-1017 59-152 (790)
471 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.19 4.2E-06 55.0 11.0 36 942-977 18-56 (229)
472 PF00406 ADK: Adenylate kinase 94.8 0.025 5.3E-07 58.1 3.7 32 949-982 1-32 (151)
473 COG1855 ATPase (PilT family) [ 94.8 0.028 6.1E-07 66.8 4.5 113 815-968 173-287 (604)
474 PRK12724 flagellar biosynthesi 94.8 0.28 6.1E-06 59.1 12.9 33 945-977 224-260 (432)
475 TIGR01448 recD_rel helicase, p 94.8 0.094 2E-06 67.4 9.6 70 946-1015 340-428 (720)
476 TIGR02173 cyt_kin_arch cytidyl 94.8 0.027 5.9E-07 58.3 4.0 30 946-975 2-31 (171)
477 PRK01184 hypothetical protein; 94.8 0.027 5.8E-07 59.6 3.9 29 946-975 3-31 (184)
478 TIGR01526 nadR_NMN_Atrans nico 94.7 0.05 1.1E-06 63.5 6.4 35 945-979 163-197 (325)
479 PRK10263 DNA translocase FtsK; 94.7 0.19 4.1E-06 67.0 12.0 75 1005-1090 1142-1218(1355)
480 COG0541 Ffh Signal recognition 94.7 4.7 0.0001 48.8 22.3 205 941-1176 97-340 (451)
481 COG2805 PilT Tfp pilus assembl 94.7 0.074 1.6E-06 60.9 7.2 70 945-1014 125-209 (353)
482 PF13521 AAA_28: AAA domain; P 94.6 0.031 6.6E-07 58.1 3.8 27 947-974 2-28 (163)
483 PRK04301 radA DNA repair and r 94.6 0.15 3.3E-06 59.1 9.8 35 945-979 103-146 (317)
484 PF09336 Vps4_C: Vps4 C termin 94.6 0.024 5.3E-07 50.5 2.6 35 1161-1197 28-62 (62)
485 TIGR00635 ruvB Holliday juncti 94.6 0.21 4.5E-06 57.2 10.8 33 452-486 30-62 (305)
486 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.13 2.8E-06 53.1 8.3 71 943-1014 24-109 (157)
487 PHA02530 pseT polynucleotide k 94.6 0.031 6.8E-07 63.7 4.1 31 945-975 3-34 (300)
488 TIGR02236 recomb_radA DNA repa 94.5 0.18 3.8E-06 58.2 10.2 35 945-979 96-139 (310)
489 PRK08099 bifunctional DNA-bind 94.5 0.062 1.3E-06 64.5 6.6 30 945-974 220-249 (399)
490 PF01745 IPT: Isopentenyl tran 94.5 0.038 8.3E-07 60.6 4.3 37 946-982 3-39 (233)
491 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.1 2.3E-06 61.7 8.2 69 945-1013 135-222 (358)
492 cd01125 repA Hexameric Replica 94.5 0.23 5E-06 55.1 10.5 21 947-967 4-24 (239)
493 PRK14526 adenylate kinase; Pro 94.4 0.041 8.9E-07 60.4 4.4 29 946-974 2-30 (211)
494 PF13086 AAA_11: AAA domain; P 94.4 0.031 6.7E-07 59.9 3.4 22 947-968 20-41 (236)
495 TIGR03499 FlhF flagellar biosy 94.4 0.2 4.3E-06 57.4 10.0 36 944-979 194-234 (282)
496 cd02019 NK Nucleoside/nucleoti 94.4 0.047 1E-06 49.2 3.9 22 947-968 2-23 (69)
497 PRK00889 adenylylsulfate kinas 94.3 0.14 3.1E-06 53.7 8.1 35 945-979 5-42 (175)
498 PRK12608 transcription termina 94.3 0.12 2.5E-06 61.4 8.0 24 945-968 134-157 (380)
499 PTZ00202 tuzin; Provisional 94.3 1.2 2.6E-05 54.1 16.2 60 908-978 261-320 (550)
500 PF13245 AAA_19: Part of AAA d 94.2 0.075 1.6E-06 49.1 4.9 23 946-968 12-35 (76)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-64 Score=585.99 Aligned_cols=554 Identities=31% Similarity=0.446 Sum_probs=427.0
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000950 406 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 485 (1211)
Q Consensus 406 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 485 (1211)
....+|+|..+--. +.|-.-|..-. .|++|+++-.|+--.+ .+.+||-|||| -...|||.|+|.++++++|-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~P--prGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRP--PRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCC--CCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45668899999876 55555555444 4799999844433322 47899999999 789999999999999999987
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCee
Q 000950 486 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 565 (1211)
Q Consensus 486 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 565 (1211)
-...+-+|.+.|+|.
T Consensus 255 sApeivSGvSGESEk----------------------------------------------------------------- 269 (802)
T KOG0733|consen 255 SAPEIVSGVSGESEK----------------------------------------------------------------- 269 (802)
T ss_pred cchhhhcccCcccHH-----------------------------------------------------------------
Confidence 665555554433321
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchh
Q 000950 566 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 645 (1211)
Q Consensus 566 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 645 (1211)
T Consensus 270 -------------------------------------------------------------------------------- 269 (802)
T KOG0733|consen 270 -------------------------------------------------------------------------------- 269 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-----cChhhHHHHHHHHhcC----C------CCEEEEeeccCCCCc
Q 000950 646 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL----P------SNVVVIGSHTQLDSR 710 (1211)
Q Consensus 646 ~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~-----~~~~~~~~i~s~L~~L----~------g~VvVIgs~~~~d~~ 710 (1211)
.|++||+-+.+ ..|.||||||||- +. .+.++-..||+.|... . .+|||||||||+|+
T Consensus 270 ---kiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs- 341 (802)
T KOG0733|consen 270 ---KIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS- 341 (802)
T ss_pred ---HHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc-
Confidence 46677777777 8999999999999 55 3555656666666544 1 38999999996665
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcch
Q 000950 711 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 788 (1211)
Q Consensus 711 k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lp 788 (1211)
+|+ |||| ||++++.+..|
T Consensus 342 -----------------------------lDp-------------------------------aLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 342 -----------------------------LDP-------------------------------ALRRAGRFDREICLGVP 361 (802)
T ss_pred -----------------------------cCH-------------------------------HHhccccccceeeecCC
Confidence 444 9999 99999999999
Q ss_pred hhhccchhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcccccc---------
Q 000950 789 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKIST--------- 857 (1211)
Q Consensus 789 d~~gR~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~--------- 857 (1211)
+..+|..||+|.-+ |+-.+ +.++..||.+|-||-||||.+||.+|+..|+.|..++... ..+..++.
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 99999999999876 55444 7889999999999999999999999999999997664331 11111111
Q ss_pred --CchhhhHH-----HH----Hhh-hhhhhhhhhhhhh--hcchhHHHHhhhcCCCCC-------CCCCCCcccccCcHH
Q 000950 858 --ESIMYGLN-----IL----QGI-QSESKSLKKSLKD--VVTENEFEKKLLADVIPP-------SDIGVTFDDIGALEN 916 (1211)
Q Consensus 858 --~sI~~~~~-----df----~~a-~~eik~~~~slk~--iv~~~e~ek~ll~~vIp~-------~e~~~sfddI~Gle~ 916 (1211)
.+++.... ++ +.+ ++...+......+ -+..++|+..+. .+-|. .-++++|+|||++++
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~ 518 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEE 518 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHH
Confidence 11221000 00 000 0011111100000 123455555442 11121 124789999999999
Q ss_pred HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHH
Q 000950 917 VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVF 996 (1211)
Q Consensus 917 vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF 996 (1211)
++.+|..++.+|+.+|++|...|+.. |.|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|
T Consensus 519 vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vF 597 (802)
T KOG0733|consen 519 VRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVF 597 (802)
T ss_pred HHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCccc
Q 000950 997 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRL 1074 (1211)
Q Consensus 997 ~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I 1074 (1211)
..|+..+|||||+||||.|+++|+... .....+++++|+++|||+.. +..|.|||+||+|+.+|++++| ||+..+
T Consensus 598 qRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~L 674 (802)
T KOG0733|consen 598 QRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLL 674 (802)
T ss_pred HHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCcee
Confidence 999999999999999999999987644 66778999999999999864 4789999999999999999999 999999
Q ss_pred ccCCCCHHHHHHHHHHHHh--hcccCCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000950 1075 MVNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1150 (1211)
Q Consensus 1075 ~v~lPd~eeR~eILk~lL~--k~~l~~dvdL~~LA~~T~--GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~ 1150 (1211)
++++|+.++|..||+.+.+ +..+.+++|+++||..+. ||+|+||..||++|...|+++.+...... .
T Consensus 675 yV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~--------~- 745 (802)
T KOG0733|consen 675 YVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS--------E- 745 (802)
T ss_pred eecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc--------C-
Confidence 9999999999999999999 778889999999999887 99999999999999999999976533211 0
Q ss_pred CCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcC
Q 000950 1151 SPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1198 (1211)
Q Consensus 1151 ~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl 1198 (1211)
...........+++.||++|+++++||+++... ..|...+..+|+
T Consensus 746 -~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr--~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 746 -DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDR--KKYDRLNKSRSL 790 (802)
T ss_pred -cccceeeeeeeecHHHHHHHHHhcCCCccHHHH--HHHHHHhhhhcc
Confidence 111111113468999999999999999987633 333344444443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-60 Score=558.20 Aligned_cols=392 Identities=32% Similarity=0.537 Sum_probs=342.1
Q ss_pred CC-CeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCCCCceeeccCcchhhh
Q 000950 663 SS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 731 (1211)
Q Consensus 663 ~~-P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l 731 (1211)
.+ |.||||+|+|. ++. ..++.+.+...++.+. +.||||+++|++++
T Consensus 276 ~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s---------------------- 332 (693)
T KOG0730|consen 276 FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS---------------------- 332 (693)
T ss_pred cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc----------------------
Confidence 55 99999999999 663 3344555555555555 79999999996665
Q ss_pred ccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH-HHHHHhhhcchhhhccchhhHHHHHhhhCCCCc
Q 000950 732 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSVLSRNGLDC 810 (1211)
Q Consensus 732 ~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR-Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~d 810 (1211)
||+ +++| ||++++++..|+..+|.+|+++||..-... ++
T Consensus 333 ld~---------------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~ 372 (693)
T KOG0730|consen 333 LDP---------------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SD 372 (693)
T ss_pred cCh---------------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-ch
Confidence 443 8988 999999999999999999999999733332 78
Q ss_pred ccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhHH
Q 000950 811 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 890 (1211)
Q Consensus 811 ~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~~e~ 890 (1211)
++|+.+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.+.- +
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa--~--------- 421 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSA--L--------- 421 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchh--h---------
Confidence 99999999999999999999999999999876 3455555554443311 0
Q ss_pred HHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 891 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 891 ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
..++ .+-++++|+||||++++|.+|++.|.+|+.+|+.|.+.++ .||+|||||||||||||++|+++|++.++
T Consensus 422 -----Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 422 -----REIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred -----hhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 0111 1233789999999999999999999999999999999985 57799999999999999999999999999
Q ss_pred cEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccE
Q 000950 971 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1050 (1211)
Q Consensus 971 ~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~V 1050 (1211)
+|+.+.+++++++|+|++|+.++.+|..|+..+|+||||||||.+.+.|+.... .+..+++++++.+|||+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcE
Confidence 999999999999999999999999999999999999999999999998864333 78899999999999999755 789
Q ss_pred EEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000950 1051 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1051 lVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.++++..+.+++|+..||+.|+||||+||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1129 PIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1129 Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
|+++.++ ...++.+||++|++.++++.+..
T Consensus 652 a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 652 ALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 9998643 24689999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-54 Score=482.66 Aligned_cols=377 Identities=60% Similarity=0.932 Sum_probs=339.7
Q ss_pred ccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhh-hcchhHHHHhhhcC
Q 000950 819 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 897 (1211)
Q Consensus 819 ~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~-iv~~~e~ek~ll~~ 897 (1211)
.+..+...-++.++.+|.+|++.++....... ..++..+++.++..+|+....+ .+++. ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445567788999999999998764433333 6677888888887777655432 34453 78899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 898 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 898 vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
+++|.++.++|+||+|++.+++++++.|.+|+++|++|+.+.+.+|++||||+||||||||++|+|+|++.|++|+.|.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 000950 978 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1057 (1211)
Q Consensus 978 seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN 1057 (1211)
+.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++||..|||+.++.+.+|+|+||||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999888999999999
Q ss_pred CCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000950 1058 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1137 (1211)
Q Consensus 1058 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~ 1137 (1211)
+|.+||++++||++++++|++|+.++|.+||+.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++|+++..+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCcc
Q 000950 1138 --KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1202 (1211)
Q Consensus 1138 --~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~R 1202 (1211)
..+.....+.....+.....-.+|+++++||.+|+.++.+++..+...|....+|++.||++++|
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 33333334444544444556668999999999999999999999999999999999999999986
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-50 Score=506.89 Aligned_cols=538 Identities=29% Similarity=0.439 Sum_probs=418.8
Q ss_pred cccccccccccchhhHHHHHHhhhhhcccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 409 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 409 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
-+++|+++--+ +..+..|.+.....++|+++- +++ + ...+.|||.||+| ....+||||||++++++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46899998766 888888888888888887763 232 2 3346799999999 68999999999999998877764
Q ss_pred CCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeee
Q 000950 488 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 567 (1211)
Q Consensus 488 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 567 (1211)
..+.+.+
T Consensus 246 ~~i~~~~------------------------------------------------------------------------- 252 (733)
T TIGR01243 246 PEIMSKY------------------------------------------------------------------------- 252 (733)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 3221100
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHH
Q 000950 568 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 647 (1211)
Q Consensus 568 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k 647 (1211)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 000 01
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCC
Q 000950 648 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 717 (1211)
Q Consensus 648 ~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--------~~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~~ 717 (1211)
-.+..+|+.+.. ..|.||||||+|.+.... .++.+.|...++.+ .+.|+|||++|+++.
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~-------- 326 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA-------- 326 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh--------
Confidence 135556666554 689999999999955421 22344455555555 358999999995443
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccch
Q 000950 718 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 795 (1211)
Q Consensus 718 ~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~ 795 (1211)
+|+ +++| ||++++++++|+...|..
T Consensus 327 ----------------------ld~-------------------------------al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 327 ----------------------LDP-------------------------------ALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred ----------------------cCH-------------------------------HHhCchhccEEEEeCCcCHHHHHH
Confidence 333 7777 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCC-Cccccc---cCchhhhHHHHHhh
Q 000950 796 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 870 (1211)
Q Consensus 796 Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~-~kl~id---~~sI~~~~~df~~a 870 (1211)
|+++|+. .-.+ ++.+++.++..|.||++++|..+|..|+..++.+..+....+ ....+. .....+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999865 2233 577899999999999999999999999999998765311100 000011 12344566677766
Q ss_pred hhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEE
Q 000950 871 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 950 (1211)
Q Consensus 871 ~~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~ 950 (1211)
+..+.+... . ..+ ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++|+|||
T Consensus 432 l~~v~ps~~--~--------------~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--R--------------EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--c--------------hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 655443210 0 000 0112578999999999999999999999999999998874 466899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHH
Q 000950 951 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 1030 (1211)
Q Consensus 951 GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~ 1030 (1211)
||||||||++|+++|++++++|+.++++++.++|+|++++.++.+|..|+..+|+||||||||.|++.++.........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765545556788
Q ss_pred HHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHH
Q 000950 1031 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1108 (1211)
Q Consensus 1031 il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~ 1108 (1211)
++++|+..++++... .+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.++.+..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 999999999997643 679999999999999999998 9999999999999999999999999888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhh
Q 000950 1109 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 1188 (1211)
Q Consensus 1109 ~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~ 1188 (1211)
.|+||+|+||.++|++|+..++++.+.....+.... . .........|+++||..|+++++||++.+ .+..
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~---~-----~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~ 721 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV---G-----EEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLR 721 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc---c-----cccccccCcccHHHHHHHHHHcCCCCCHH--HHHH
Confidence 999999999999999999999998754332111000 0 00011235799999999999999999876 4567
Q ss_pred hhHHHHHhc
Q 000950 1189 LLQWNELYG 1197 (1211)
Q Consensus 1189 ~v~WnDigG 1197 (1211)
+.+|...+|
T Consensus 722 ~~~~~~~~~ 730 (733)
T TIGR01243 722 YERLAKELK 730 (733)
T ss_pred HHHHHHHhc
Confidence 889988776
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=458.68 Aligned_cols=441 Identities=27% Similarity=0.451 Sum_probs=334.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHh----cC-CCCEEEEeeccCCCCccccCCCCCc
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE----NL-PSNVVVIGSHTQLDSRKEKSHPGGL 719 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~-----~~~~~~~i~s~L~----~L-~g~VvVIgs~~~~d~~k~k~~~~~~ 719 (1211)
+++.|..+.- .+|.||||++.|-+... .-++...|+-.|. +. .++++|||+++..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 3444444444 58888888888874321 1234444444444 22 348999999996555
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchhhHH
Q 000950 720 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISI 799 (1211)
Q Consensus 720 ~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~Il~I 799 (1211)
+|- .+-.+|.. +|+++.++..-|.+||++
T Consensus 546 ----------------lp~-----------------~i~~~f~~------------------ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 546 ----------------LPA-----------------DIQSLFLH------------------EIEVPALSEEQRLEILQW 574 (953)
T ss_pred ----------------CCH-----------------HHHHhhhh------------------hccCCCCCHHHHHHHHHH
Confidence 221 22334444 455555555555555555
Q ss_pred HHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-----CCccccccCchhhhHHHHHhhhhh
Q 000950 800 RSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-----DAKLKISTESIMYGLNILQGIQSE 873 (1211)
Q Consensus 800 hT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-----~~kl~id~~sI~~~~~df~~a~~e 873 (1211)
-+ ....+ .++.+..++.+|.||+-.+++.++.-+...+..+-....+. ...-.+-+........||..+...
T Consensus 575 y~--~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 575 YL--NHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred HH--hccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 32 22223 56788899999999999999999988755555442211110 011112223344455555444332
Q ss_pred hhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCC
Q 000950 874 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 953 (1211)
Q Consensus 874 ik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPp 953 (1211)
.+ ++|...+.+..|| +++|+||||++++|.+|.+.+.+|+.+|++|..+ .++..||||||||
T Consensus 653 ~~------------~~fs~aiGAPKIP----nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPP 714 (953)
T KOG0736|consen 653 LQ------------KEFSDAIGAPKIP----NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPP 714 (953)
T ss_pred HH------------HhhhhhcCCCCCC----ccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCC
Confidence 22 2344444444444 7999999999999999999999999999999876 4555799999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchH-HHHHHHH
Q 000950 954 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMK 1032 (1211)
Q Consensus 954 GTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~-e~l~~il 1032 (1211)
|||||.+|+|+|.++..+|+.+.+++|.++|+|++|+++|.+|+.|+..+|||||+||+|.|.++|+..+.. ..+.++.
T Consensus 715 GTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 715 GTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred CCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876544 4889999
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCC-HHHHHHHHHHHHhhcccCCcccHHHHHHH
Q 000950 1033 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANM 1109 (1211)
Q Consensus 1033 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd-~eeR~eILk~lL~k~~l~~dvdL~~LA~~ 1109 (1211)
.+++.++||+.......|.||||||+|+.||++++| ||++-+++.+++ .+.+..+|+++.++..+.+++++.++|+.
T Consensus 795 SQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 795 SQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred HHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhh
Confidence 999999999987677899999999999999999999 999999999875 67789999999999999999999999999
Q ss_pred cC-CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccc
Q 000950 1110 AD-GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSES 1183 (1211)
Q Consensus 1110 T~-GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~ 1183 (1211)
+. .|+|+|+..||..|++.|++|.+...+... .+......+...|+||||.+|+++.+||++...
T Consensus 875 cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~E 940 (953)
T KOG0736|consen 875 CPPNMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQE 940 (953)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHHH
Confidence 96 899999999999999999999766544210 011112234468999999999999999998653
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-45 Score=407.70 Aligned_cols=284 Identities=42% Similarity=0.710 Sum_probs=256.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..+++.|+||.|+.++|+-|+|+|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34578999999999999999999999999999997 4589999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 1059 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~--~~~VlVIaTTN~p 1059 (1211)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++..++++.+++..+|+.+|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987653 2349999999999
Q ss_pred CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1060 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1060 ~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
++||++++|||.++|+|++|+.+.|..+|+..+....+.++++++.||..++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcC
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 1198 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl 1198 (1211)
+..... ....-..+++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 443 ~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 221111 1111126899999999999999999754 56788999999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=424.36 Aligned_cols=452 Identities=33% Similarity=0.479 Sum_probs=360.6
Q ss_pred eeeecCCCCcCCCCCCC--CCCCCCcccccccccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh-
Q 000950 605 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN- 681 (1211)
Q Consensus 605 gV~fd~~~~~~~~l~~~--ce~~~~~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~~- 681 (1211)
||.+..|...|.++.+. +.....+ ..-.-..+.+.|.......+..+|+-+.. ..|.|+|+++++.+.....
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 56667777777777721 1111212 11111122456766677777888887777 7789999999999766322
Q ss_pred ---hh----HHHHHHHHhcC-CCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHH
Q 000950 682 ---DA----YGALKSKLENL-PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 753 (1211)
Q Consensus 682 ---~~----~~~i~s~L~~L-~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~ 753 (1211)
+. .+.+...++.+ .+.|+++|++++++. +++
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~------------------------------~~~----------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG------------------------------LDP----------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecCCccc------------------------------cCh-----------
Confidence 23 33344444433 356899998885443 333
Q ss_pred HHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHH
Q 000950 754 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 831 (1211)
Q Consensus 754 ~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~L 831 (1211)
++++ ||++++++.+|+..+|..|+.+|+.+...+. ..++..++..+.||.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 7777 9999999999999999999999998443332 7889999999999999999999
Q ss_pred HhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccc
Q 000950 832 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 911 (1211)
Q Consensus 832 v~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI 911 (1211)
|+.+..++.++.. ......+.+...+|..++..+.+. ..+....+.++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehh
Confidence 9999999998764 122344455555555444333221 011122346899999
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHH
Q 000950 912 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 991 (1211)
Q Consensus 912 ~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~ 991 (1211)
+|++..++.+++.+.+|+.+++.|.+.+ .+++.|+|||||||||||+||+++|++++.+|+.+..+++.++|+|+++++
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999998755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--c
Q 000950 992 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 1069 (1211)
Q Consensus 992 I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--R 1069 (1211)
++.+|..|++.+||||||||+|.|++.+.... .....+++++++..++++... .+|+||+|||+++.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 99999999999999999999999998886432 223378999999999998754 679999999999999999999 9
Q ss_pred cCcccccCCCCHHHHHHHHHHHHhhcc--cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 000950 1070 LPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAE 1147 (1211)
Q Consensus 1070 F~~~I~v~lPd~eeR~eILk~lL~k~~--l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae 1147 (1211)
|+..++|++|+.++|.+||+.++.... +..++++..++..|+||+++||.++|++|++.++++..
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------------- 467 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------------- 467 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------
Confidence 999999999999999999999999644 35789999999999999999999999999999988742
Q ss_pred ccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 000950 1148 NRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1180 (1211)
Q Consensus 1148 ~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s 1180 (1211)
...++++||..|+++++|++.
T Consensus 468 ------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 ------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ------------cCCccHHHHHHHHHhcCCCCC
Confidence 257999999999999999975
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-44 Score=398.99 Aligned_cols=247 Identities=41% Similarity=0.697 Sum_probs=230.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||||+++++++|++.+.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34789999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|+|++...++.+|..|+.++||||||||||.+.++|... +......+.+-+|+.+|||+.+. .+|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 34445567777899999999764 7899999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.|||+++| ||++.|+|++|+.+.|.+||+.+.+++++..++|++.||..|+|+||+||+++|.+|.+.|+|+-
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999972
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccC
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCAS 1178 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS 1178 (1211)
...+||+||.+|++++...
T Consensus 377 ---------------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 377 ---------------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------cCeecHHHHHHHHHHHHhc
Confidence 2579999999999997643
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=417.17 Aligned_cols=296 Identities=33% Similarity=0.582 Sum_probs=261.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
+++|.+|||++....+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.|+++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999988 999999999995 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC--CccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~--~~~VlVIaTTN~p~~L 1062 (1211)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...++.++++.+|+..||++.... ..+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999998876 667788999999999999987653 4789999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH-
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK- 1139 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~- 1139 (1211)
|++++| ||++.|.+..|+..+|.+||+.++++..+..++|+..||+.|.||.|+||.+||.+|+..|++|+++....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999999874431
Q ss_pred -HHH-----------------HHH----------------h-hccCCCCCCCccccccccHHHHHHHHHHhccCcccccc
Q 000950 1140 -ERA-----------------LAL----------------A-ENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1184 (1211)
Q Consensus 1140 -e~~-----------------~a~----------------a-e~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~ 1184 (1211)
... +.. . .+...+........-.|+++||++|+..++||..+++.
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 000 000 0 00000000011123468999999999999999999999
Q ss_pred chhhhhHHHHHhcCCCccc
Q 000950 1185 NMNELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1185 ~~~~~v~WnDigGl~~~Rk 1203 (1211)
...|.+.|+||||++.+|.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred eecCCCChhhcccHHHHHH
Confidence 9999999999999998884
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=360.65 Aligned_cols=299 Identities=36% Similarity=0.632 Sum_probs=255.0
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 896 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 896 ~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+..|-...+++.|+|+.|++..++.|++.|.+|+..|.+|... .+|.+||||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 4445556678999999999999999999999999999999754 67899999999999999999999999999999999
Q ss_pred eccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 000950 976 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 976 ~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
+.++|+++|.|++|+.++++|++|+.++|+||||||||.|++.|. .++.+..+++..+|+++|.|.... ...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGND-NDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhccccC-CCceEEEec
Confidence 999999999999999999999999999999999999999988775 467889999999999999998754 588999999
Q ss_pred cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc-cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHH
Q 000950 1056 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1134 (1211)
Q Consensus 1056 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~-l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrll 1134 (1211)
||-|+.||.+++|||.++|++++|+...|..+|+.++.... ...+.|+..|+.+|+||+|+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999988743 34678999999999999999999999999999999976
Q ss_pred HHHHHHHHHHH---hhccCCCCCCCc-----------------cccccccHHHHHHHHHHhccCccccccchhhhhHHHH
Q 000950 1135 EKEKKERALAL---AENRASPPLYSS-----------------VDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNE 1194 (1211)
Q Consensus 1135 e~~~~e~~~a~---ae~~~~~~~~~~-----------------~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnD 1194 (1211)
..-+..+...- .+-...-..++. .-..+|||.||.+++...+|++... .+....+|++
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHH
Confidence 55443221100 000000001110 1134899999999999999999765 4567788998
Q ss_pred HhcCCC
Q 000950 1195 LYGEGG 1200 (1211)
Q Consensus 1195 igGl~~ 1200 (1211)
-+|.+|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 888875
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=376.94 Aligned_cols=298 Identities=31% Similarity=0.532 Sum_probs=252.5
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhH
Q 000950 810 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 889 (1211)
Q Consensus 810 d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~~e 889 (1211)
..+|+.++.+|.||..-|+.-+|.-|...|+. +.+.+..| .....+|+.++..-.|..
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k--------lltke~f~ksL~~F~P~a----------- 652 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK--------LLTKELFEKSLKDFVPLA----------- 652 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc--------cchHHHHHHHHHhcChHH-----------
Confidence 35677799999999999999999999999983 22222222 233445554443332221
Q ss_pred HHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 890 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 890 ~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+.++-.....+..|+||+|+.++++.|++.+++|.++|.+|.+..+. -+.|||||||||||||+||.++|..++
T Consensus 653 -----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 -----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred -----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCC
Confidence 11111111224789999999999999999999999999999988754 448999999999999999999999999
Q ss_pred CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc
Q 000950 970 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1049 (1211)
Q Consensus 970 ~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~ 1049 (1211)
..|+.+.+++|.++|+|.+|+.++.+|..|+..+|||||+||+|.+.++|+.. ......++.++++.+|||...- ..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Egl--~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEGL--DG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhcccccc--ce
Confidence 99999999999999999999999999999999999999999999999998752 3346678999999999997643 67
Q ss_pred EEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1050 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1050 VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||+|+||..|+-.|.+
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999888888899999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 000950 1128 CPIREILEKEK 1138 (1211)
Q Consensus 1128 ~Airrlle~~~ 1138 (1211)
.++++++....
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99999875443
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=354.89 Aligned_cols=387 Identities=22% Similarity=0.269 Sum_probs=285.6
Q ss_pred HHHHHHHHHhhccCC-----CCeEEEEcChhhhhc-------cChhhHHHHHHHHh-cCCC-----CEEEEeeccCCCCc
Q 000950 649 AINELFEVALNESKS-----SPLIVFVKDIEKSLT-------GNNDAYGALKSKLE-NLPS-----NVVVIGSHTQLDSR 710 (1211)
Q Consensus 649 ~~~~l~evl~sesk~-----~P~Ilf~~die~~l~-------~~~~~~~~i~s~L~-~L~g-----~VvVIgs~~~~d~~ 710 (1211)
-+.-||.=+-+|-|. +=-||-||+||. +| ++.-.|..++..|. ++.| |++|||-|||.|-
T Consensus 304 NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl- 381 (744)
T KOG0741|consen 304 NVRKLFADAEEEQRRLGANSGLHIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL- 381 (744)
T ss_pred HHHHHHHhHHHHHHhhCccCCceEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-
Confidence 466666666554433 446999999999 66 44556666665543 3344 9999999996443
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcch
Q 000950 711 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 788 (1211)
Q Consensus 711 k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lp 788 (1211)
+ |||||| ||++|+|+.||
T Consensus 382 -----------------------------I-------------------------------DEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741|consen 382 -----------------------------I-------------------------------DEALLRPGRLEVQMEISLP 401 (744)
T ss_pred -----------------------------H-------------------------------HHHhcCCCceEEEEEEeCC
Confidence 2 459999 99999999999
Q ss_pred hhhccchhhHHHHH-hhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHH
Q 000950 789 TLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 865 (1211)
Q Consensus 789 d~~gR~~Il~IhT~-l~~~~l--~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~ 865 (1211)
|++||.||++|||. |+++++ .++||++||.+||||+||||++||++|.|+|+.|+.....+........+++++...
T Consensus 402 DE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~ 481 (744)
T KOG0741|consen 402 DEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRG 481 (744)
T ss_pred CccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHH
Confidence 99999999999998 999987 899999999999999999999999999999999987644333334566688999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCc
Q 000950 866 ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK 945 (1211)
Q Consensus 866 df~~a~~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~ 945 (1211)
||..++.+++|+++ ..+++++.....+++.++.. ...+.+.-..++.+ ++.+ -..+..
T Consensus 482 DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~---------v~~il~~G~llv~q-vk~s-------~~s~lv 539 (744)
T KOG0741|consen 482 DFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPP---------VTRILDDGKLLVQQ-VKNS-------ERSPLV 539 (744)
T ss_pred HHHHHHHhcCcccC-----CCHHHHHHHHhCCceeeccc---------HHHHHhhHHHHHHH-hhcc-------ccCcce
Confidence 99999999999998 66788888888988887643 22333333333332 2221 144557
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se-L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
.+||+||||+|||+||..+|...++||+.+-.++ +.+..-...-.+++.+|+.|++.+-+||++|+|++|+. .-+..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD--~vpIG 617 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD--YVPIG 617 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc--ccccC
Confidence 8999999999999999999999999999987665 33322222235799999999999999999999999973 33455
Q ss_pred HHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH-HHHhccCcccccCCCCH-HHHHHHHHHHHhhcccCCccc
Q 000950 1025 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDA-PNREKIIRVILAKEELASDVD 1102 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~v~lPd~-eeR~eILk~lL~k~~l~~dvd 1102 (1211)
..+.+.+++.|+..+...+++. .+++|++||++...|.+ .+...|+..+.++..+. ++-.++++. .++..+.+
T Consensus 618 PRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~----~n~fsd~~ 692 (744)
T KOG0741|consen 618 PRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE----LNIFSDDE 692 (744)
T ss_pred chhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH----ccCCCcch
Confidence 6778889999999998877654 67899999988766653 45668887776665443 444444433 23333444
Q ss_pred HHHHHHHcC----CCcHHHHHHHHHHHH
Q 000950 1103 LEGIANMAD----GYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1103 L~~LA~~T~----GySgaDL~~L~~~Aa 1126 (1211)
...++.... +.-...|-.|+++|.
T Consensus 693 ~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 693 VRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred hHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 444443332 222456666666665
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.4e-35 Score=353.38 Aligned_cols=319 Identities=23% Similarity=0.384 Sum_probs=251.2
Q ss_pred CCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcch
Q 000950 808 LDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 887 (1211)
Q Consensus 808 l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~ 887 (1211)
++...++.|+..+.|++-.+++.++..+... . + .++.+.+...+.. .+ +++..
T Consensus 162 ~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~-------~--~~~~~~~~~i~~~-------k~-------q~~~~ 214 (489)
T CHL00195 162 IDSELLENLTRACQGLSLERIRRVLSKIIAT----Y-------K--TIDENSIPLILEE-------KK-------QIISQ 214 (489)
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-------C--CCChhhHHHHHHH-------HH-------HHHhh
Confidence 4667888999999999999999988753321 1 0 1222222221110 00 00100
Q ss_pred hHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 888 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 888 ~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..++.......+|++|+|++.+|+.+.+..... ...+...++ .+++||||+||||||||++|+++|++
T Consensus 215 --------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 215 --------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred --------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 111222223578999999999999998755421 122233453 46699999999999999999999999
Q ss_pred hCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000950 968 AGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1047 (1211)
Q Consensus 968 lg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~ 1047 (1211)
++.+|+.++++.+.++++|+++..++++|..|+..+||||||||||.++..+..........+++.+|+..++. ..
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~ 358 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KK 358 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CC
Confidence 99999999999999999999999999999999999999999999999987655444556677888888887764 23
Q ss_pred ccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccC--CcccHHHHHHHcCCCcHHHHHHHHH
Q 000950 1048 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA--SDVDLEGIANMADGYSGSDLKNLCV 1123 (1211)
Q Consensus 1048 ~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~--~dvdL~~LA~~T~GySgaDL~~L~~ 1123 (1211)
.+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.++.+.... .+.+++.||..|+||+|+||+++|.
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 679999999999999999998 999999999999999999999999886432 5788999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHh
Q 000950 1124 TAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1196 (1211)
Q Consensus 1124 ~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDig 1196 (1211)
+|+..+..+ .+.++.+||..|+.++.|++.........+++|-.-+
T Consensus 439 eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 439 EAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 998766542 1569999999999999999876666777899997654
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-37 Score=349.85 Aligned_cols=249 Identities=36% Similarity=0.589 Sum_probs=227.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
..+++|+|+-|.++.+++|+|.|.+ ++.|+.|.+.+ .+-|+||||+||||||||+||||+|.+.++||+...++++..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 3478999999999999999999985 99999999987 556799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
.++|.+.+.++.+|..|++.+||||||||||.+.++|.....+ ..+..+++++..|||+..+ ..|+||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhh
Confidence 9999999999999999999999999999999998888654444 8899999999999999765 689999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
|+++.| ||+++|.++.||..-|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|....
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg------- 525 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG------- 525 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999998765531
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
...|+|.|++-|..++-...-+.
T Consensus 526 -------------------a~~VtM~~LE~akDrIlMG~ERk 548 (752)
T KOG0734|consen 526 -------------------AEMVTMKHLEFAKDRILMGPERK 548 (752)
T ss_pred -------------------cccccHHHHhhhhhheeeccccc
Confidence 24699999999999876655443
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=342.30 Aligned_cols=279 Identities=46% Similarity=0.791 Sum_probs=252.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
..+.|+|+.|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.+.++.|+.+.++.|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 35789999999999999999999999999999754 6788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
|.|+.++.++.+|..|+..+|+||||||||.++..| .+..++..++++.+|+..+++.......+|+||+|||+|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998 6678888999999999999999988888999999999999999
Q ss_pred HHHHhccCcccccCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1064 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1064 ~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~-~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++|||..++++++|+.+.|..+|+.++.+. ....+.+++.|+++|+||+++||.++|..|++..++++......+.
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~- 383 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF- 383 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh-
Confidence 99999999999999999999999999999987 3346788999999999999999999999999999988643211110
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCC
Q 000950 1143 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1200 (1211)
Q Consensus 1143 ~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~ 1200 (1211)
......|+++..||+.|++.++++++.+ ....+..|+..+|+..
T Consensus 384 ------------~~~~~~r~i~~~df~~a~~~i~~~~s~~--~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 384 ------------IDADKIRPITYPDFKNAFKNIKPSVSLE--GLEKYEKWDKEFGSSE 427 (428)
T ss_pred ------------cchhccCCCCcchHHHHHHhhccccCcc--ccchhHHHhhhhcccc
Confidence 1234668999999999999999999887 4567889999999754
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=312.34 Aligned_cols=255 Identities=32% Similarity=0.590 Sum_probs=232.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+..++.||||++.++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|.+.+..|..+.++.|..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34568999999999999999999999999999999995 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.|+|.+.+.++..|..|+..+|+||||||+|.+..+|.... ......+.+.+++.+++|+.+. .+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 99999999999999999999999999999999988876532 2334456667889999999865 7899999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.|||+++| |+++.|+|+.|+.+.|..|++.+-+++.+.+++++++||+.|++|+|++++++|.+|.+.|+|+-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~----- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG----- 396 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999972
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCcccccccCCC
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKRKSLSYF 1210 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rkk~~~~yf 1210 (1211)
...++-+||..++.+++ .|||.+|.||
T Consensus 397 ---------------------atev~heDfmegI~eVq------------------------akKka~l~yy 423 (424)
T KOG0652|consen 397 ---------------------ATEVTHEDFMEGILEVQ------------------------AKKKASLNYY 423 (424)
T ss_pred ---------------------cccccHHHHHHHHHHHH------------------------Hhhhhccccc
Confidence 23589999999998876 5778888887
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-34 Score=302.60 Aligned_cols=245 Identities=37% Similarity=0.627 Sum_probs=225.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..+.+++.||||++-+++++++.+.+|+.+.++|.+.++ .||+|+|+|||||||||+||+|+|+...+.|+.+.++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456789999999999999999999999999999999985 5779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1059 (1211)
.+|.|++...++.+|..|+..+|+||||||||.+..+|... +......+++-+++.+|+|+... .++-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 99999999999999999999999999999999999887642 34456678889999999999755 789999999999
Q ss_pred CCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000950 1060 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1137 (1211)
Q Consensus 1060 ~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~ 1137 (1211)
+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+...-+..+++||..+|++|.+.|+|+-
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999871
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000950 1138 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1138 ~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
.-.+...||++|.+.+
T Consensus 381 ----------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------------------ceeeeHHHHHHHHHhh
Confidence 1257788999998764
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=299.87 Aligned_cols=244 Identities=35% Similarity=0.612 Sum_probs=224.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
+.+++-++|++.++++|++.+.+|..+|++|...++..| +|+|||||||||||.||+++|++..+.|+.+++++|..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 567888999999999999999999999999999998876 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
+|++...++.+|-+|+.++|+|||.||||++...|.. .+......+.+.+++.++||+... .++-||.+||+.+-|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 9999999999999999999999999999999766532 333445556677899999999765 679999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
|++++| |+++.|+|++|+.+.|.+|++.+-+++++...+++..+|....|-+|++++.+|.+|.+.|+|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1177 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~p 1177 (1211)
...+|.|||+-|+.++-.
T Consensus 373 -------------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHh
Confidence 146999999999988643
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=311.48 Aligned_cols=243 Identities=39% Similarity=0.652 Sum_probs=223.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|.||+|++.++++|++.+.+|+.+|+.|...++ +||+||+|||+||||||.||+|+|++..+.|+.+-.++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 458999999999999999999999999999999985 6779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
.|...+.++++|..|..++|+|+||||||.+..+|.. .+......+.+.+|+.+++|+.. +..|-||.+||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEeccccccc
Confidence 9999999999999999999999999999999888754 23333445555689999999975 4789999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
||+++| |+++.|.|+.||...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
...++++||.+|.+.+-
T Consensus 411 -------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 -------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred -------------------HhhccHHHHHHHHHHHH
Confidence 14699999999998864
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=326.47 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=221.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||+|++.++++|++.+.+|+.+++.|.+.++. |++++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 447899999999999999999999999999999998854 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.|.|+.+..++.+|..|+..+|+||||||||.++..+... +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22334567778888888887543 5799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.+|++++| ||++.|+|++|+.++|..||+.++.+..+..++++..++..|+||+++||+++|++|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888889999999999999999999999999999988761
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1177 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~p 1177 (1211)
...|+++||.+|++++..
T Consensus 371 ---------------------~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 371 ---------------------RYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---------------------CCccCHHHHHHHHHHHHh
Confidence 146999999999998653
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=301.22 Aligned_cols=242 Identities=31% Similarity=0.485 Sum_probs=213.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|+|++|+++.|...+-.+. .|.+|+.|..++ |++||+|||||||||++|+++|++.+.|++.+.+.+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988766555 488999998774 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
+|.+...++++|+.|++.+|||+||||+|.+.-.|.-+.-..-...+.+.|+..+||+. .+..|..||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997555333333345578899999999997 4478999999999999999
Q ss_pred HHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH-HHHHHHHhhhhHHHHHHHHHHHHH
Q 000950 1065 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK-NLCVTAAHCPIREILEKEKKERAL 1143 (1211)
Q Consensus 1065 aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~-~L~~~Aa~~Airrlle~~~~e~~~ 1143 (1211)
++++||...|+|.+|+.++|.+|++.++++..+.-+.+++.++..|.|+||+||+ .++..|.++|+.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed---------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED---------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999998889999999999999999998 56677888877762
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1144 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1144 a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
...|+.+||+.|+++.++..
T Consensus 340 ----------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 340 ----------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred ----------------hhhhhHHHHHHHHHhhcccc
Confidence 13478899999999866554
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=339.76 Aligned_cols=248 Identities=42% Similarity=0.695 Sum_probs=226.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
.+.+++|+|+.|.++++++|+|+|.+ |.+|+.|.+.+ .+.|+|+||+||||||||.||+|+|.++++||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34578999999999999999999985 99999999998 56779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC---CCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
..+.|.....++.+|..|+..+||||||||||.+...|. ..+.+......+++++.+|||+... ..|+|+++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999998899999999999999999999999999988774 3344555667899999999999765 78999999999
Q ss_pred CCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHH
Q 000950 1059 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1135 (1211)
Q Consensus 1059 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle 1135 (1211)
++.||++++| ||++.|.+++|+...|..|++.+++..++. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~--- 536 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK--- 536 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---
Confidence 9999999999 999999999999999999999999998885 7889999999999999999999999999998886
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1136 KEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1136 ~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
....|+..||..|++++....
T Consensus 537 -----------------------~~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 537 -----------------------GLREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred -----------------------ccCccchhhHHHHHHHHhccc
Confidence 235689999999999776664
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-34 Score=334.41 Aligned_cols=263 Identities=38% Similarity=0.604 Sum_probs=245.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+ ++++|.......+++.+.+|+.++..|...+ .+||+++|+|||||+|||++++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 7899999999999999999999999999888 45779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 985 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
.|+.+++++.+|++|.+++ |+||||||+|.+++++..... ..+++..+++..++++.. ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876443 678899999999999873 37899999999999999
Q ss_pred HHHHh-ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1064 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1064 ~aLlr-RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++| ||++.+.+..|+..+|.+|++.+.+++++.++.++..+|..|.||+|+||..+|..|+..++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999887775
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCcccc
Q 000950 1143 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRKR 1204 (1211)
Q Consensus 1143 ~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rkk 1204 (1211)
+++||..|+..++||..++.....+++.|+||||++.+|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67899999999999999999988899999999999999865
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.2e-32 Score=316.02 Aligned_cols=250 Identities=41% Similarity=0.686 Sum_probs=222.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|++|+|++++++.|.+.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 46789999999999999999999999999999988854 56899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
|.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 122345566677777777653 357999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
+|++++| ||+..|.|++|+.++|.+||+.++.+..+..++++..||..|+||+++||.++|++|++.|+++.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------ 356 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------ 356 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 9999998 99999999999999999999999998888888999999999999999999999999999887751
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
...|+++||.+|+++++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13599999999999999887655
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.9e-32 Score=291.05 Aligned_cols=248 Identities=33% Similarity=0.579 Sum_probs=225.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.+++.|++|..++++.|++.+..|+.+|+.|.+.++. ||+|||+|||||||||.+|+|+|+..++.|+.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999999964 7799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|+|+....++.+|++|+..+.||||+||||.+.+.|... +......+.+.+++.+++|+.+. +++-|+.+||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888653 33444556667789999999754 7899999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||..+..-+|++|+.+|.+|.+.|+|.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999888899999999999999999999999999999998862
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
.+..|-.||.+|+.++...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 13467789999999876554
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=310.67 Aligned_cols=245 Identities=38% Similarity=0.624 Sum_probs=218.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|+||+|++.+++.|.+.+.+|+.++++|...++. +++++||+||||||||++|+++|++++.+|+.+.++++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 35799999999999999999999999999999988854 66899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
|.|..+..++.+|..|....|+||||||||.++.++... +......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 999999999999999999999999999999998766431 22233445666788888887533 57999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
+|++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+++||+++|.+|++.|+++-
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------ 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 9999998 99999999999999999999999999888889999999999999999999999999999988862
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1177 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~p 1177 (1211)
...|+++||.+|++++..
T Consensus 409 --------------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------------CCccCHHHHHHHHHHHHh
Confidence 246999999999999753
No 27
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-32 Score=340.79 Aligned_cols=408 Identities=19% Similarity=0.212 Sum_probs=296.8
Q ss_pred ceeeeccccCCCCcceeeecCCCCcCCCCC-----CCCCCCCC---cccccccccccCCCCchhHHHHHHHHHHHHhhcc
Q 000950 590 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 661 (1211)
Q Consensus 590 g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~-----~~ce~~~~---~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~ses 661 (1211)
+++...|-.++. =||.|+.|...|.+|+ +.|..+.. ||..-...| .+.|..+..+.+..|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 345444445554 5899999999999987 67776655 888878777 579999999999999999988
Q ss_pred CCCCeEEEEcChhhhhc-----cChhhHHHHHHHHhcC------CCCEEEEeeccCCCCccccCCCCCceeeccCcchhh
Q 000950 662 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 730 (1211)
Q Consensus 662 k~~P~Ilf~~die~~l~-----~~~~~~~~i~s~L~~L------~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~ 730 (1211)
++|+||||++|++ |+ .+.++|++||++|.+| +|+|||||||||
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR------------------------ 415 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR------------------------ 415 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC------------------------
Confidence 9999999999999 55 6899999999999999 689999999995
Q ss_pred hccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCC
Q 000950 731 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 808 (1211)
Q Consensus 731 l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l 808 (1211)
||++|+ |||| ||+++|||+||+..+|..|+.|||+.|.+++
T Consensus 416 ------pda~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 416 ------PDAIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred ------ccccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 445555 9998 9999999999999999999999999999999
Q ss_pred CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcch
Q 000950 809 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 887 (1211)
Q Consensus 809 ~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~ 887 (1211)
.-..+..||..|.||+||||++||++|+..++++.++++|. ..++.+++..+++...+|..++..+.+....-.. +
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~-~-- 535 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSV-I-- 535 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcccc-C--
Confidence 99999999999999999999999999999999999999998 7889999999999999999988766543221000 0
Q ss_pred hHHHHhhhcCCCCCC--------CCCCCcccccCcHHHHHHHHHHHHcccCChhh-hhcCCCCCCCceEEEEcCCCChHH
Q 000950 888 NEFEKKLLADVIPPS--------DIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKT 958 (1211)
Q Consensus 888 ~e~ek~ll~~vIp~~--------e~~~sfddI~Gle~vk~~L~e~V~~pL~~pel-f~k~~i~~Pp~gILL~GPpGTGKT 958 (1211)
-...++.. ........+.-+......+.+...+.++..+. |.-..+.+| .+||.|..|.|.+
T Consensus 536 -------~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~ 606 (1080)
T KOG0732|consen 536 -------FSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQD 606 (1080)
T ss_pred -------CCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccC
Confidence 00001000 00001111222233333333333322221111 122223333 5999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEecccccccc-ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 959 MLAKAVATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 959 ~LArAIA~el-g~~fi~I~~seL~s~~-~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++..+|.+.+ +.++...+.+.+.... .+..+..+..+|.+|++..||||||.++|.|...... .+...|+
T Consensus 607 ~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~ 678 (1080)
T KOG0732|consen 607 YLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFL 678 (1080)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcch
Confidence 9999999988 7888888887776665 6777889999999999999999999999999643321 2333444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
..++.... ...+..+-+-+..+ ..-=..++.+..|..+.+..+++..+++
T Consensus 679 ~~l~~~~~--~t~i~e~~t~~~~~------~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 679 SSLDEKAL--STPILELHTWDTSF------ESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hcchhhhh--ccchhhhccccccc------cccCccccccccchhhhhHHHHHHHHHH
Confidence 44332211 11222222211110 0000134667778888888888877765
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=8.5e-31 Score=315.38 Aligned_cols=269 Identities=39% Similarity=0.600 Sum_probs=229.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..+.++|+||+|++++++++.+.+.. +.+++.|.+.+ ..+++|+||+||||||||++|+++|++++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34578999999999999999998875 88888888776 45668999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1059 (1211)
+.+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... ..++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 99999999999999999999999999999999998766531 22344567888999999987543 579999999999
Q ss_pred CCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000950 1060 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1137 (1211)
Q Consensus 1060 ~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~ 1137 (1211)
+.||++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~----- 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK----- 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999877777889999999999999999999999998776553
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCC
Q 000950 1138 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1200 (1211)
Q Consensus 1138 ~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~ 1200 (1211)
....++++||..|++++..........+.+..+|...+.+.|
T Consensus 279 ---------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ---------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ---------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124689999999999887654444444556666766665544
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=314.18 Aligned_cols=250 Identities=40% Similarity=0.624 Sum_probs=227.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
...++|.|+.|.++.++++.+.|.. +..|..|...+. +-|+|+||+||||||||+||+++|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3478999999999999999999985 899999998886 66799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.++|-+...+|.+|..|++.+||||||||||.+...|+. .+.+....+.+++++.+|||+.. +..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999766642 23455566789999999999973 47899999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.|.++.||...|++|++.++++..+..++++..+|+.|.|++++||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
....++|.||.+|++++.......
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erk 397 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERK 397 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcC
Confidence 225699999999999987665433
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=5.8e-30 Score=321.13 Aligned_cols=288 Identities=37% Similarity=0.617 Sum_probs=246.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++|+|++.+++.|.+.+..|+.++++|...++ .+++++||+||||||||+||++||++++.+|+.++++++.+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 579999999999999999999999999999998885 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
.|..+..++.+|..|....|+||||||||.+++.+... ..+...+++++|+..++++.. ...++||++||+++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 99999999999999999999999999999998776543 223446678888888888753 367999999999999999
Q ss_pred HHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1065 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1065 aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++ ||+..+.+++|+.++|.+||+.+.....+..+.++..++..+.||+++||..+|..|++.++++.+........
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9998 99999999999999999999999888877788899999999999999999999999999999987542211000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCccc
Q 000950 1143 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1143 ~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rk 1203 (1211)
. . ...........++++||..|++.++|+...+.....+.+.|+||+|++.+|+
T Consensus 410 ----~-~--~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 410 ----A-E--EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred ----c-c--cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 0 0 0000111234689999999999999999888777779999999999998875
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=4e-29 Score=290.01 Aligned_cols=243 Identities=44% Similarity=0.721 Sum_probs=213.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|++|+|++++++.|.+++..|+.+++.|...++. +++|+||+||||||||++|+++|++++.+|+.+.+.++...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 46789999999999999999999999999999988854 56899999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
++|.....++.+|..|+...|+||||||+|.++..+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999986654321 122334556677777776543 257999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
++++++| ||++.+.|+.|+.++|.+||+.++....+..++++..|+..|+||+++||.++|.+|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988887778899999999999999999999999999988751
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
...|+.+||.+|++++
T Consensus 348 --------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCccCHHHHHHHHHHh
Confidence 1469999999999875
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=2.5e-28 Score=291.34 Aligned_cols=274 Identities=29% Similarity=0.490 Sum_probs=211.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 972 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~----------f 972 (1211)
.+.++|++|+|++..+++|++.+.+|+.+++.|...++ .|++|+|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998885 466899999999999999999999998543 6
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCc
Q 000950 973 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1048 (1211)
Q Consensus 973 i~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~ 1048 (1211)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+.........+.++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778899999999999999999998874 6999999999999987765444455577889999999998643 5
Q ss_pred cEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhc-ccC---------CcccHHHHHHH-------
Q 000950 1049 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELA---------SDVDLEGIANM------- 1109 (1211)
Q Consensus 1049 ~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~-~l~---------~dvdL~~LA~~------- 1109 (1211)
+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 220 11112222211
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHH
Q 000950 1110 ----------------------ADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDD 1167 (1211)
Q Consensus 1110 ----------------------T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~ED 1167 (1211)
++.+||++|+++|.+|...|+++.+. ...+.++++|
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~~ 470 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIEH 470 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHHH
Confidence 23456666666666666666655431 1124799999
Q ss_pred HHHHHHHhccCccccccchhhhhHHHHHhcCCCcc
Q 000950 1168 FKYAHEQVCASVSSESTNMNELLQWNELYGEGGSR 1202 (1211)
Q Consensus 1168 F~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~R 1202 (1211)
+..|+..--.-. .+..+-..-..|..|-|..|-|
T Consensus 471 l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 471 LLAAVLDEFRES-EDLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred HHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCCc
Confidence 999988633221 1222222335799998876543
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.6e-28 Score=301.00 Aligned_cols=243 Identities=38% Similarity=0.598 Sum_probs=212.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 367999999999999999998875 788888877774 456899999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
+.|.....++.+|..|+...|+||||||||.+...+.. ...+.....++++|+..++++.. +.+++||++||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHh
Confidence 88888889999999999999999999999999866543 22334456778889999988754 367999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
+|++++| ||++.+.+++|+.++|.+||+.++....+..+.++..+|..|.||+++||.++|++|+..+.++
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~------- 406 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR------- 406 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 9999999999999999999999999877778899999999999999999999999998877654
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
....|+++||+.|++++.
T Consensus 407 -------------------~~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 407 -------------------KKATITMKEIDTAIDRVI 424 (638)
T ss_pred -------------------CCCCcCHHHHHHHHHHHH
Confidence 124689999999998873
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9e-29 Score=306.52 Aligned_cols=348 Identities=28% Similarity=0.390 Sum_probs=266.0
Q ss_pred hhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCccccccCchhhhHHHHH
Q 000950 790 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 868 (1211)
Q Consensus 790 ~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl~id~~sI~~~~~df~ 868 (1211)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4556667777766443 455667777778888887777777766665555554443 3333322222222221111
Q ss_pred hhhhhhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEE
Q 000950 869 GIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGIL 948 (1211)
Q Consensus 869 ~a~~eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gIL 948 (1211)
...-.+..+..+.|+++||++.++++|++.|..|+.+|+.|...++. ||+|+|
T Consensus 251 --------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL 303 (1080)
T KOG0732|consen 251 --------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVL 303 (1080)
T ss_pred --------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCccee
Confidence 00011122346799999999999999999999999999999998865 669999
Q ss_pred EEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc
Q 000950 949 LFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1023 (1211)
Q Consensus 949 L~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~ 1023 (1211)
++||||||||..|+++|..+ ...|+.-..++..++|+|+.+..++-+|++|++.+|+|||+||||-|.+.|....
T Consensus 304 ~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq 383 (1080)
T KOG0732|consen 304 FHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ 383 (1080)
T ss_pred ecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH
Confidence 99999999999999999887 4667777889999999999999999999999999999999999999998886644
Q ss_pred hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcc-cCCc
Q 000950 1024 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LASD 1100 (1211)
Q Consensus 1024 ~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~-l~~d 1100 (1211)
++ ....+..+|+..|+|+... +.|+||+|||+++.++++++| ||++.++|++|+.+.|.+|+..+..+-. ....
T Consensus 384 Eq-ih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~ 460 (1080)
T KOG0732|consen 384 EQ-IHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR 460 (1080)
T ss_pred HH-hhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCH
Confidence 33 4557889999999999755 789999999999999999999 9999999999999999999999876643 2234
Q ss_pred ccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 000950 1101 VDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1180 (1211)
Q Consensus 1101 vdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s 1180 (1211)
.-+..||..|.||.|+||+.||.+|+..++++-....-. +.... .-......|..+||..|+.++.|+..
T Consensus 461 ~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~------s~~kl----~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 461 ELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS------SSDKL----LIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec------ccccc----cccchhhhhhhHhhhhhhhccCCCCC
Confidence 457889999999999999999999999998873211100 00000 01122344899999999999988876
Q ss_pred cc
Q 000950 1181 SE 1182 (1211)
Q Consensus 1181 ~e 1182 (1211)
..
T Consensus 531 R~ 532 (1080)
T KOG0732|consen 531 RS 532 (1080)
T ss_pred cc
Confidence 64
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=269.38 Aligned_cols=243 Identities=35% Similarity=0.667 Sum_probs=217.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++++|+-.+..++++.+..|+.+|++|.+.++ +||.+++||||||+|||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 568999999999999999999999999999998775 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
.|++...+++.|..|+.+.|||||+||||...+++.+.. ......+.+-+++.+|+++... .+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCcccc
Confidence 999999999999999999999999999999998875532 2334455566677888887544 789999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
+++++| |+++.+.+++|+...|..|++.+.+.......++.+.+.+..+|++++|+.+.|++|.+.++++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------- 357 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------- 357 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh-------
Confidence 999999 99999999999999999999999888888888999999999999999999999999998888762
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
.-.+.+|||..++.++.
T Consensus 358 -------------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 -------------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------------hHHHhHHHHHHHHHHHH
Confidence 12367789998887754
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=1.7e-27 Score=294.17 Aligned_cols=249 Identities=39% Similarity=0.604 Sum_probs=216.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
....+|+++.|.+..++.+.+.+.. +..++.|...+. ..++|+||+||||||||++|++++.+++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3456899999999999999998876 556666665543 44578999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s--~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+.|.....++.+|..|+..+|+||||||||.+...+.. .+.+.....++++++..++++... ..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChh
Confidence 889999999999999999999999999999999877653 223444567889999999987643 6799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.+.+++|+.++|.+||+.++++..+..++++..+|..|.||+++||.++|++|+..++++
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~------ 375 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 375 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999887764
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1181 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~ 1181 (1211)
....++++||++|+.++.+....
T Consensus 376 --------------------~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 376 --------------------NKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred --------------------CCCcccHHHHHHHHHHHhccccc
Confidence 12468999999999988766443
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.7e-26 Score=295.49 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=155.8
Q ss_pred hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc-------------------------------
Q 000950 936 CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------- 984 (1211)
Q Consensus 936 ~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~------------------------------- 984 (1211)
.+.| ..||+||||+||||||||+||+|+|.++++||+.|+++++...+
T Consensus 1623 lrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3344 46789999999999999999999999999999999999987543
Q ss_pred ----------ccchH--HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc-cCCccEE
Q 000950 985 ----------FGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVL 1051 (1211)
Q Consensus 985 ----------~G~~e--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~-k~~~~Vl 1051 (1211)
.+..+ ..++.+|+.|++.+||||||||||.|..... ....+.+++..|++... ....+|+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEE
Confidence 11122 2488899999999999999999999964421 11236778888887642 2346799
Q ss_pred EEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHh--hcccCC-cccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1052 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1052 VIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~--k~~l~~-dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
||||||+|+.||||++| ||++.|.|+.|+..+|.+++..++. ...+.. .+++..+|..|.||+|+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999887653 334443 367999999999999999999999999
Q ss_pred hhhhHH
Q 000950 1127 HCPIRE 1132 (1211)
Q Consensus 1127 ~~Airr 1132 (1211)
..|+++
T Consensus 1855 liAirq 1860 (2281)
T CHL00206 1855 SISITQ 1860 (2281)
T ss_pred HHHHHc
Confidence 999887
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.6e-27 Score=268.00 Aligned_cols=263 Identities=26% Similarity=0.435 Sum_probs=216.9
Q ss_pred CCCccc--ccCcHHHHHHH-HHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccc
Q 000950 905 GVTFDD--IGALENVKDTL-KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 980 (1211)
Q Consensus 905 ~~sfdd--I~Gle~vk~~L-~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~I~~seL 980 (1211)
.-.|++ |||++.--..+ +++...-+--|+...+.++. .-+|||||||||||||.+||.|.+.+++ +--.+|++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 456666 89998666554 55555556667888888854 4589999999999999999999999964 4556899999
Q ss_pred ccccccchHHHHHHHHHHHHhc--------CCcEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 981 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~s~~~-~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
.++|+|++|.+++.+|..|..- .--||++||||.++.+|++... ......+.++|+..|||...- .+|+
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999988542 1249999999999998887544 557788999999999998654 6799
Q ss_pred EEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1052 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1052 VIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~----~l~~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
||+-||+.+.+|++++| ||...+++.+||..-|.+|++.+.+++ .+..++|+++||..|..|||++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988774 356899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 000950 1126 AHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1181 (1211)
Q Consensus 1126 a~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~ 1181 (1211)
...|+-|.+...-.. .......+...|+++||..|+++++|++..
T Consensus 452 ~S~A~nR~vk~~~~~-----------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~ 496 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKV-----------EVDPVAIENLKVTRGDFLNALEDVKPAFGI 496 (744)
T ss_pred HHHHHHhhhccCcce-----------ecCchhhhheeecHHHHHHHHHhcCcccCC
Confidence 999988876433110 001122345689999999999999999854
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=4e-24 Score=242.71 Aligned_cols=188 Identities=20% Similarity=0.257 Sum_probs=153.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhh
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSM 1015 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L 1015 (1211)
.++|.+++||||||||||++|++||++++++|+.+++++|.++|+|++|+.++++|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred hcCCCCCchHHHHHHH-HHhhhhhccCCc----------ccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHH
Q 000950 1016 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1016 ~~~r~s~~~~e~l~~i-l~~LL~~ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~e 1082 (1211)
++++... ......++ ..+|+..+|+.. .....+|.||+|||+++.|+++++| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988642 23333344 478888887631 1234679999999999999999999 999764 589999
Q ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHcCC----CcHHHHHHHHHHHHhhhhHH
Q 000950 1083 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1083 eR~eILk~lL~k~~l~~dvdL~~LA~~T~G----ySgaDL~~L~~~Aa~~Airr 1132 (1211)
+|.+|++.++++..+. ..++..|+..+.| |.|+--..+..++...-+.+
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 5788888888876 45544445555554444444
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6e-23 Score=244.96 Aligned_cols=250 Identities=22% Similarity=0.321 Sum_probs=199.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++..|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998644333 33
Q ss_pred HHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHH
Q 000950 1025 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1104 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~ 1104 (1211)
.....+.++.++. .+.. .....+++||++|+..+.+++.+++.|.++|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333344454444 2222 2234789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccc
Q 000950 1105 GIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST 1184 (1211)
Q Consensus 1105 ~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~ 1184 (1211)
.+|..|.||+.+||..++..+-..+..++.+..-........++.+ ......+++|||.+|+.+++..++....
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~------~~~~~~l~~edf~kals~~~~~fs~aiG 662 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGEL------CAAGFLLTEEDFDKALSRLQKEFSDAIG 662 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccccc------ccccceecHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999998874444333322210000000011111 1123689999999999999999998777
Q ss_pred chh-hhhHHHHHhcCCCccc
Q 000950 1185 NMN-ELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1185 ~~~-~~v~WnDigGl~~~Rk 1203 (1211)
+.+ |+|.|+||||++.+|+
T Consensus 663 APKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCccchhcccCHHHHHH
Confidence 755 9999999999998874
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-22 Score=228.75 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=199.4
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
++.+|.||..--. ++.|.+|-+|+...+..++| ...|...++.+||.|||| ....|||||+|.+.|.-+.-+-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~---F~GirrPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEF---FKGIRRPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHH---HhhcccccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4677999988877 99999999999999988775 568888999999999999 6899999999999998877776
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
|+.|...|..|+
T Consensus 278 sstltSKwRGeS-------------------------------------------------------------------- 289 (491)
T KOG0738|consen 278 SSTLTSKWRGES-------------------------------------------------------------------- 289 (491)
T ss_pred hhhhhhhhccch--------------------------------------------------------------------
Confidence 655444333222
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
T Consensus 290 -------------------------------------------------------------------------------- 289 (491)
T KOG0738|consen 290 -------------------------------------------------------------------------------- 289 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--c-------ChhhHHHHHHHHhcCCC---C---EEEEeeccCCCCcc
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLT--G-------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRK 711 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~--~-------~~~~~~~i~s~L~~L~g---~---VvVIgs~~~~d~~k 711 (1211)
.-++..|||++.- ..|.+||||+||.+-. | +.++.+-|.-.++.+.+ + |.|+.|||
T Consensus 290 EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------ 360 (491)
T KOG0738|consen 290 EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------ 360 (491)
T ss_pred HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------
Confidence 2377889999988 8999999999999443 1 23344333333444422 5 99999999
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhh
Q 000950 712 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 791 (1211)
Q Consensus 712 ~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~ 791 (1211)
+||++|+ ||||||+..+|++|||.+
T Consensus 361 ------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 361 ------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCHH
Confidence 8999996 999999999999999999
Q ss_pred ccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchh--hhHHHHH
Q 000950 792 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQ 868 (1211)
Q Consensus 792 gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~--~~~~df~ 868 (1211)
+|..+++|- |+.-.+ ++++++.|+..+.||+|+||..+|+.|.-++++|+..-........+..+.+. +...||+
T Consensus 386 ~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe 463 (491)
T KOG0738|consen 386 ARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFE 463 (491)
T ss_pred HHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHH
Confidence 999999996 777666 78899999999999999999999999999999987654433344445555555 7778888
Q ss_pred hhhhhhhhh
Q 000950 869 GIQSESKSL 877 (1211)
Q Consensus 869 ~a~~eik~~ 877 (1211)
.++..+.+.
T Consensus 464 ~Al~~v~pS 472 (491)
T KOG0738|consen 464 EALRKVRPS 472 (491)
T ss_pred HHHHHcCcC
Confidence 887766653
No 42
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=226.21 Aligned_cols=233 Identities=24% Similarity=0.306 Sum_probs=182.7
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 485 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 485 (1211)
+.-+|||+..--. |....=|.++.-..|+|++. |-+ .+.| -..+||.|||| ....+||||.||+-+|.++=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PEl--F~~~GI~P-PKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPEL--FEELGIDP-PKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHH--HHHcCCCC-CCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 3456788887777 77778889999999999997 544 4444 35799999999 689999999999999998754
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCee
Q 000950 486 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 565 (1211)
Q Consensus 486 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 565 (1211)
=. + .-|
T Consensus 217 vg----------S----------------------------------------------------------------ElV 222 (406)
T COG1222 217 VG----------S----------------------------------------------------------------ELV 222 (406)
T ss_pred cc----------H----------------------------------------------------------------HHH
Confidence 22 1 012
Q ss_pred -eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCch
Q 000950 566 -KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 644 (1211)
Q Consensus 566 -~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~ 644 (1211)
||+|-.
T Consensus 223 qKYiGEG------------------------------------------------------------------------- 229 (406)
T COG1222 223 QKYIGEG------------------------------------------------------------------------- 229 (406)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 566631
Q ss_pred hHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCcc
Q 000950 645 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRK 711 (1211)
Q Consensus 645 ~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~--------~~~~~~~~i~s~L~~L-----~g~VvVIgs~~~~d~~k 711 (1211)
-+++.+||+++.+ +.|.|||||+||.+=+ +..+.-..+-..|..| +|+|-||.||||+|-
T Consensus 230 --aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~-- 302 (406)
T COG1222 230 --ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI-- 302 (406)
T ss_pred --hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc--
Confidence 1389999999999 9999999999999433 2344444444444444 459999999997665
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchh
Q 000950 712 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 789 (1211)
Q Consensus 712 ~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd 789 (1211)
||| |||| ||+|.+||++||
T Consensus 303 --------------------LDP---------------------------------------ALLRPGR~DRkIEfplPd 323 (406)
T COG1222 303 --------------------LDP---------------------------------------ALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred --------------------cCh---------------------------------------hhcCCCcccceeecCCCC
Confidence 555 9999 999999999999
Q ss_pred hhccchhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHH
Q 000950 790 LKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 868 (1211)
Q Consensus 790 ~~gR~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~ 868 (1211)
+.||.+|++|||+ |. --+++|++.||..|.|++||||+++|++|--+|++... ..+...||+
T Consensus 324 ~~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~ 386 (406)
T COG1222 324 EEGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFL 386 (406)
T ss_pred HHHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHH
Confidence 9999999999997 43 22789999999999999999999999999999997432 245678888
Q ss_pred hhhhhhhh
Q 000950 869 GIQSESKS 876 (1211)
Q Consensus 869 ~a~~eik~ 876 (1211)
.+..++..
T Consensus 387 ~Av~KV~~ 394 (406)
T COG1222 387 KAVEKVVK 394 (406)
T ss_pred HHHHHHHh
Confidence 87765543
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-21 Score=232.12 Aligned_cols=261 Identities=21% Similarity=0.286 Sum_probs=206.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW 984 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~~ 984 (1211)
.+++-...++++..+....| +.++ .+|||+||+|+|||.|++++++++ .+++..++|+.+.+..
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------cccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 35666666776665533322 1222 479999999999999999999988 4678899999999888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC-chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~-~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
+....+.+..+|..|.+++|+||+||++|.|++...+. ++.......+..|+..+-....+.+..+.|||+.+....++
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 88889999999999999999999999999999743332 22223334444555444334445567789999999999999
Q ss_pred HHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1064 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1064 ~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
+.+.+ +|+.++.++.|+..+|.+||+.++++.... ...|++.++..|+||...||..++.+|.+.++.+.+..
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~---- 631 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN---- 631 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc----
Confidence 98888 899999999999999999999999885422 33456669999999999999999999999888543211
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhh-hHHHHHhcCCCccc
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNEL-LQWNELYGEGGSRK 1203 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~-v~WnDigGl~~~Rk 1203 (1211)
....+|.++|.++++.+.|...++.....+. ..|.||||+...|+
T Consensus 632 ------------------~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 632 ------------------GPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred ------------------CcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 1126999999999999999999888877755 99999999988775
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=3.5e-19 Score=224.00 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=132.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~--- 983 (1211)
.++|++++++.+.+.+... +.++ .+|...+||+||+|||||++|+++|+.++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 5789999999998877531 2222 2344458999999999999999999999999999999875431
Q ss_pred --cccchHH-----HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC-cccCCccEEEEEe
Q 000950 984 --WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAA 1055 (1211)
Q Consensus 984 --~~G~~e~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl-~~k~~~~VlVIaT 1055 (1211)
.+|.... ....+....++.+.+||||||||.+ .+..+..+.+++...... ++. ..-+-.++++|+|
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~~~~~~~Ll~~ld~g~~~-d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----HPDIYNILLQVMDYATLT-DNNGRKADFRNVILIMT 600 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----CHHHHHHHHHhhccCeee-cCCCcccCCCCCEEEEC
Confidence 2222111 1123444455666789999999987 222233333333221110 110 0011246789999
Q ss_pred cCCC-------------------------CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc---------cC-Cc
Q 000950 1056 TNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---------LA-SD 1100 (1211)
Q Consensus 1056 TN~p-------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~---------l~-~d 1100 (1211)
||.. ..+.|+|+.|++.++.|.+.+.++..+|++..+.+.. +. ++
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 8752 1256788889999999999999999999999886421 11 23
Q ss_pred ccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000950 1101 VDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1101 vdL~~LA~~T--~GySgaDL~~L~~~Aa~~Airr 1132 (1211)
..++.|+... ..|..+.|+.+++.-...++.+
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 3355566542 3455566666666555544443
No 45
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.1e-20 Score=209.38 Aligned_cols=232 Identities=21% Similarity=0.330 Sum_probs=188.3
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000950 395 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 474 (1211)
Q Consensus 395 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 474 (1211)
|+.-+.-.+|.+++|.|+|+..--. |.+|+.|-+..-..|+++++-+ ..+|...+..|||.|||| .-..|||||+
T Consensus 73 ~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~-~g~Ll~p~kGiLL~GPpG--~GKTmlAKA~ 147 (386)
T KOG0737|consen 73 YEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA-KGKLLRPPKGILLYGPPG--TGKTMLAKAI 147 (386)
T ss_pred HHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc-ccccccCCccceecCCCC--chHHHHHHHH
Confidence 5666778899999999999999998 9999999999999999999855 347777999999999999 7899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 000950 475 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 554 (1211)
Q Consensus 475 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1211)
|+.-||.+.-++.+.+-+.|..|+
T Consensus 148 Akeaga~fInv~~s~lt~KWfgE~-------------------------------------------------------- 171 (386)
T KOG0737|consen 148 AKEAGANFINVSVSNLTSKWFGEA-------------------------------------------------------- 171 (386)
T ss_pred HHHcCCCcceeeccccchhhHHHH--------------------------------------------------------
Confidence 999999988887765554332211
Q ss_pred CCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccc
Q 000950 555 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 634 (1211)
Q Consensus 555 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~ 634 (1211)
T Consensus 172 -------------------------------------------------------------------------------- 171 (386)
T KOG0737|consen 172 -------------------------------------------------------------------------------- 171 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----ChhhHHHH----HHHHhcCC----CCEEEEe
Q 000950 635 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGAL----KSKLENLP----SNVVVIG 702 (1211)
Q Consensus 635 ~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~----~~~~~~~i----~s~L~~L~----g~VvVIg 702 (1211)
.=++.++|-+.. |-+|.|||||+||.+|.. .-|....+ ...++.|. ..|+|+|
T Consensus 172 ------------eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 172 ------------QKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ------------HHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 124555665554 589999999999998862 23333333 34556662 2699999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHH
Q 000950 703 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 782 (1211)
Q Consensus 703 s~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq 782 (1211)
|||| |.++| +|.+||+.+.
T Consensus 237 ATNR------------------------------P~DlD-------------------------------eAiiRR~p~r 255 (386)
T KOG0737|consen 237 ATNR------------------------------PFDLD-------------------------------EAIIRRLPRR 255 (386)
T ss_pred CCCC------------------------------CccHH-------------------------------HHHHHhCcce
Confidence 9994 44444 4999999999
Q ss_pred hhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 000950 783 LERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 845 (1211)
Q Consensus 783 ~e~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 845 (1211)
|.+++|+...|..||++- +..-.+ +++|+.++|..|+||||.||..+|+.|+...++....
T Consensus 256 f~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 256 FHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999999999985 666666 8899999999999999999999999999988875543
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=7.7e-18 Score=210.63 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=115.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc----
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 982 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s---- 982 (1211)
.|+|++++++.|.+.+.... .++ .+|...+||+||||||||++|+++|..++.+|+.++|+++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 58999999999999886421 121 345456999999999999999999999999999999987532
Q ss_pred -ccccchHHHH----HHHH-HHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc-------ccCCcc
Q 000950 983 -KWFGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKER 1049 (1211)
Q Consensus 983 -~~~G~~e~~I----~~lF-~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~-------~k~~~~ 1049 (1211)
.++|....++ ...+ ...++.+.+||||||||.+ ++ .+.+.|+..++... .-+-.+
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----~~-------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HP-------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----hH-------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 2333221111 1233 3345556699999999988 22 23333443333211 111246
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1050 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1050 VlVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
+++|+|||.- ..+.|+|+.|++.++.|++.+.++..+|+..++.+
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8899999831 13568899999999999999999999999887764
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=6.6e-19 Score=198.83 Aligned_cols=237 Identities=16% Similarity=0.243 Sum_probs=169.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 980 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~P--p~gILL~GPpGTGKT~LArAIA~el-------g~~fi~I~~seL 980 (1211)
+++|++++|++|.+++.+ +..+..+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998876 333455555555443 3459999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-
Q 000950 981 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1059 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p- 1059 (1211)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..++.. ...++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988777788887764 489999999998643321 122345556666666542 2557888887542
Q ss_pred ----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHH----c--CCCc-HHHHHHHHHHHHh
Q 000950 1060 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 1127 (1211)
Q Consensus 1060 ----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~----T--~GyS-gaDL~~L~~~Aa~ 1127 (1211)
..+++++.+||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . ..|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 2344 8999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000950 1128 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1171 (1211)
Q Consensus 1128 ~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~A 1171 (1211)
+...|+..... ...+.+++..++.+||.+.
T Consensus 253 ~~~~r~~~~~~--------------~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 253 RQANRIFESGG--------------RVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHcCCC--------------CCCCHHHHhCCCHHHHhHH
Confidence 87777654311 0123346678888888643
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=2e-18 Score=194.74 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=171.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 980 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~--Pp~gILL~GPpGTGKT~LArAIA~elg-------~~fi~I~~seL 980 (1211)
+++|++++|++|.+.+.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998876 44555555555433 445799999999999999999988762 37999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-
Q 000950 981 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1059 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p- 1059 (1211)
.+.++|..+..++.+|..|.. +||||||++.|.+.+.. ......+.+.|+..++.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 888999888888888887754 89999999998643321 122234455566655532 2567888887542
Q ss_pred -C---CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc------C-CCcHHHHHHHHHHHHh
Q 000950 1060 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------D-GYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1060 -~---~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T------~-GySgaDL~~L~~~Aa~ 1127 (1211)
+ .+++++.+||+..|.|+.++.+++.+|++.++.+.... ++..+..++.+. + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 223344444431 1 2357999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHH
Q 000950 1128 CPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYA 1171 (1211)
Q Consensus 1128 ~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~A 1171 (1211)
+...|+..... ......++..++.+|+..+
T Consensus 252 ~~~~r~~~~~~--------------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD--------------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC--------------CCCCHHHHhCCCHHHHhhc
Confidence 77777643211 0112345678888888654
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=2.5e-18 Score=191.33 Aligned_cols=216 Identities=15% Similarity=0.225 Sum_probs=155.5
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 978 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~P--p~gILL~GPpGTGKT~LArAIA~el-------g~~fi~I~~s 978 (1211)
+++++|++++|++|++++.++....... +.+...+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887654432222 2333222 3569999999999999999999875 3478999999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 979 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
++.+.++|+....++.+|..|. ++||||||+|.|..... .......++.++..++.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888999998775 48999999999853111 112234556666666543 245666666543
Q ss_pred C-----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc---------CCCcHHHHHHHHH
Q 000950 1059 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA---------DGYSGSDLKNLCV 1123 (1211)
Q Consensus 1059 p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T---------~GySgaDL~~L~~ 1123 (1211)
. ..+++++.+||+..+.|+.++.+++.+|++.++...... ++..+..|+... ..-+++.+.++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 247789999999899999999999999999999875432 233344443321 1235788999999
Q ss_pred HHHhhhhHHHHH
Q 000950 1124 TAAHCPIREILE 1135 (1211)
Q Consensus 1124 ~Aa~~Airrlle 1135 (1211)
.|..+...|++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 988777666543
No 50
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.5e-18 Score=167.83 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=113.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchH
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1025 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~ 1025 (1211)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999988 9999999999998776 33345
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHH-hccCcccccCC
Q 000950 1026 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1078 (1211)
Q Consensus 1026 e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRF~~~I~v~l 1078 (1211)
.....+++.++..++..... ..+++||+|||.++.+++.++ +||+.++.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667778888888776543 367999999999999999999 99998888763
No 51
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3e-18 Score=189.57 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=156.8
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 000950 896 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 968 (1211)
Q Consensus 896 ~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el------- 968 (1211)
-+.+|..+...-|+.++--..+|+.|..++...+...+.-....+..-.+-|||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 3566666666678888888899999999887655544433333322223448999999999999999999988
Q ss_pred --CCcEEEEeccccccccccchHHHHHHHHHHHHhcC---C--cEEEEccchhhhcCCCC---CchHHHHHHHHHhhhhh
Q 000950 969 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 969 --g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~s---~~~~e~l~~il~~LL~~ 1038 (1211)
....+++++..++++||+++.+.+..+|......- . -.++|||++.|...|.+ ..+..-.-++.+.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 34678999999999999999999999998776542 2 35668999999876632 22233344788999999
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1039 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
+|.+.. ..+|++++|+|-.+.+|.++..|-+.+.++..|+...|.+|++..+.+
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 999864 478999999999999999999999999999999999999999998876
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.1e-19 Score=191.86 Aligned_cols=223 Identities=20% Similarity=0.299 Sum_probs=175.8
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000950 395 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 474 (1211)
Q Consensus 395 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 474 (1211)
++..|.-+|| -++-+|-|+.---. |..|.+|-+|+-..+|.+.+ || .=...++.|||.|||| ...-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPql--Ft-GkR~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQL--FT-GKRKPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhh--hc-CCCCcceeEEEeCCCC--CcHHHHHHHH
Confidence 4445555555 36778999998888 99999999999999998776 43 2334678999999999 5788999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 000950 475 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 554 (1211)
Q Consensus 475 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1211)
|.+-+.-+.-+-|++|-..|
T Consensus 187 ATEAnSTFFSvSSSDLvSKW------------------------------------------------------------ 206 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLVSKW------------------------------------------------------------ 206 (439)
T ss_pred HhhcCCceEEeehHHHHHHH------------------------------------------------------------
Confidence 99877666655554443322
Q ss_pred CCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccc
Q 000950 555 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 634 (1211)
Q Consensus 555 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~ 634 (1211)
T Consensus 207 -------------------------------------------------------------------------------- 206 (439)
T KOG0739|consen 207 -------------------------------------------------------------------------------- 206 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHhc-C------CCCEEEEe
Q 000950 635 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLEN-L------PSNVVVIG 702 (1211)
Q Consensus 635 ~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~-----~~~~~~~i~s~L~~-L------~g~VvVIg 702 (1211)
-....-++..|||++.+ +.|.|||||+||. +|+ -.+....|+..|.- + ...|+|+|
T Consensus 207 --------mGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 207 --------MGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred --------hccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 22233478889999998 9999999999995 873 24444455554432 2 34899999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHH
Q 000950 703 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 782 (1211)
Q Consensus 703 s~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq 782 (1211)
||| .||.+|. |.||||++.
T Consensus 275 ATN------------------------------iPw~LDs-------------------------------AIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhHHH-------------------------------HHHHHhhcc
Confidence 999 7787775 999999999
Q ss_pred hhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhh
Q 000950 783 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSH 838 (1211)
Q Consensus 783 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~ 838 (1211)
+|||||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.--
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalme 349 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALME 349 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhh
Confidence 99999999999999999955566778899999999999999999999988876543
No 53
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-17 Score=188.06 Aligned_cols=208 Identities=26% Similarity=0.438 Sum_probs=163.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
..|++++-.......|+.+... ..+ .+. -.-|.++||+|||||||||++|+.||...|..+-.+.+.++.-. -
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~a-TaN----TK~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIA-TAN----TKK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHH-hcc----ccc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 3477888888888888776542 111 111 13356789999999999999999999999999988887775431 1
Q ss_pred cchHHHHHHHHHHHHhcCCc-EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 986 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
...-..|..+|+.|++...+ +|||||.|.++..|......+..+..++.|+..--. ....++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23455789999999988765 778999999999888877888889999999865322 2367899999999999999
Q ss_pred HHHhccCcccccCCCCHHHHHHHHHHHHhhccc------------------------C---CcccHHHHHHHcCCCcHHH
Q 000950 1065 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL------------------------A---SDVDLEGIANMADGYSGSD 1117 (1211)
Q Consensus 1065 aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l------------------------~---~dvdL~~LA~~T~GySgaD 1117 (1211)
++-.||+.+++|++|..++|..|+..|+.+.-+ . .+..+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999999999998865211 0 1122577899999999999
Q ss_pred HHHHHHH
Q 000950 1118 LKNLCVT 1124 (1211)
Q Consensus 1118 L~~L~~~ 1124 (1211)
|..|+.-
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9988653
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.3e-17 Score=195.44 Aligned_cols=248 Identities=36% Similarity=0.537 Sum_probs=216.5
Q ss_pred ccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEE
Q 000950 928 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVV 1007 (1211)
Q Consensus 928 pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsIL 1007 (1211)
++..++.|...+ ..++.+++++||||+|||.++++++.+ +..+..++.++..+++.|..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 556677777766 456699999999999999999999999 777788899999999999999999999999999999999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHH
Q 000950 1008 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNRE 1085 (1211)
Q Consensus 1008 fIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~ 1085 (1211)
++|++|.+.+.+.. ........+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+..|+...|.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988766 555677888999999999987 445 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccH
Q 000950 1086 KIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKM 1165 (1211)
Q Consensus 1086 eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~ 1165 (1211)
+|+...........+.++..++..+.||.++++..+|..+...++++.+ ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999998887777788999999999999999999999999988888753 00112356899
Q ss_pred HHHHHHHHHhccCccccccchhhhhHHHHHhcCCCccc
Q 000950 1166 DDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1166 EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rk 1203 (1211)
+||.++++++.++ .+.....+.+.|.|+||++..|.
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~ 252 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKE 252 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHH
Confidence 9999999999998 66667779999999999987774
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.72 E-value=2.2e-15 Score=191.87 Aligned_cols=211 Identities=19% Similarity=0.228 Sum_probs=128.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 982 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s 982 (1211)
+.++|++.+.+.+...+... +.++ .+|...+||+||+|+|||+||+++|+.+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35899999999998877531 1121 3444458999999999999999999987 46899999887532
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 983 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 983 ~-----~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
. ++|....+ ...+....++.+.+||+|||||.+ ++.....+.+++++..........-+-.+.++
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----CHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 1 22221111 123455556666699999999987 22222222222222111000001111257889
Q ss_pred EEecCCCC-------------------------------------CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc
Q 000950 1053 LAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1053 IaTTN~p~-------------------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~ 1095 (1211)
|+|||... .+.|+|+.|++.+|.|.+.+.++..+|++..+.+.
T Consensus 656 I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 656 IMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred EEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99987421 02356788999999999999999999998887652
Q ss_pred -------c--cC-CcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHH
Q 000950 1096 -------E--LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1096 -------~--l~-~dvdL~~LA~~T--~GySgaDL~~L~~~Aa~~Airr 1132 (1211)
+ +. ++...+.|+... ..|..+.|+.+++.-...++.+
T Consensus 736 ~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 736 FKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 1 11 222345555542 2344555665555555444443
No 56
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.70 E-value=2.4e-15 Score=191.82 Aligned_cols=173 Identities=21% Similarity=0.350 Sum_probs=110.5
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~---~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
+..++|++.+++.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 356889999999998887631 11222 333458999999999999999999887 5679999998754
Q ss_pred cc-----cccchHHH----HHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC-cccCCccE
Q 000950 982 SK-----WFGEGEKY----VKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERV 1050 (1211)
Q Consensus 982 s~-----~~G~~e~~----I~~lF~~A-~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl-~~k~~~~V 1050 (1211)
.. .+|....+ -...+..+ +..+.+|||||||+.+ ++..+..+..+++..... ++. ...+-.+.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~~v~~~Ll~ile~g~l~-d~~gr~vd~rn~ 712 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HPDVFNILLQVLDDGRLT-DGQGRTVDFRNT 712 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CHHHHHHHHHHHhhCcee-cCCceEEeeccc
Confidence 32 22211110 01223333 3444589999999977 222222332333221110 110 00112456
Q ss_pred EEEEecCCC-------------------------CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1051 LVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1051 lVIaTTN~p-------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
+||+|||.. ..+.++|+.|++.++.|.+++.++..+|++.++..
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 788898862 13457889999999999999999999999988865
No 57
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.4e-17 Score=188.90 Aligned_cols=220 Identities=24% Similarity=0.373 Sum_probs=170.6
Q ss_pred HhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 000950 399 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 478 (1211)
Q Consensus 399 l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 478 (1211)
|...|.|-+.++|+|+.-=-- |..|.=|-+-+- .||.+. ||++==--.-+.|||.|||| ....+||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 457788888899999987777 999999999876 677754 46654456678999999999 68999999999999
Q ss_pred CCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcc
Q 000950 479 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 558 (1211)
Q Consensus 479 ~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1211)
++++.-- .| +|+
T Consensus 362 ~VPFF~~-----sG-----SEF---------------------------------------------------------- 373 (752)
T KOG0734|consen 362 GVPFFYA-----SG-----SEF---------------------------------------------------------- 373 (752)
T ss_pred CCCeEec-----cc-----cch----------------------------------------------------------
Confidence 9886421 11 111
Q ss_pred ccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccccccc
Q 000950 559 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 638 (1211)
Q Consensus 559 ~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d 638 (1211)
|- -|||- .
T Consensus 374 ----dE-m~VGv--------------------------------------------------------------G----- 381 (752)
T KOG0734|consen 374 ----DE-MFVGV--------------------------------------------------------------G----- 381 (752)
T ss_pred ----hh-hhhcc--------------------------------------------------------------c-----
Confidence 00 02221 1
Q ss_pred CCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc---ChhhHHHHHHHHhcC----C-----CCEEEEeeccC
Q 000950 639 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDAYGALKSKLENL----P-----SNVVVIGSHTQ 706 (1211)
Q Consensus 639 ~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~---~~~~~~~i~s~L~~L----~-----g~VvVIgs~~~ 706 (1211)
-.-+..||..+.. +.|.|||||++|. +++ +.+.| .-+.+|.+| . .+||||||||
T Consensus 382 --------ArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN- 447 (752)
T KOG0734|consen 382 --------ARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN- 447 (752)
T ss_pred --------HHHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC-
Confidence 1146778888877 8999999999999 662 22222 344444444 2 3999999999
Q ss_pred CCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhh
Q 000950 707 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLE 784 (1211)
Q Consensus 707 ~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e 784 (1211)
|||++|+ ||.| |||+|+-
T Consensus 448 -----------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 448 -----------------------------FPEALDK-------------------------------ALTRPGRFDRHVT 467 (752)
T ss_pred -----------------------------ChhhhhH-------------------------------HhcCCCccceeEe
Confidence 6666776 9999 9999999
Q ss_pred hcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 785 RDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 785 ~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
.|+||+.||.+||+.| |..-.+ .++|+.-+|.-|.||+||||+.+|+.|+.+|-.
T Consensus 468 Vp~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 468 VPLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred cCCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999 566666 689999999999999999999999999999976
No 58
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.7e-15 Score=186.78 Aligned_cols=163 Identities=22% Similarity=0.335 Sum_probs=120.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 982 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~seL~s 982 (1211)
..++|++++...+.+.+.. .+.++ .+|...+||.||+|+|||-||+++|..+. -.++.+||++++.
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3589999999999988864 23343 34545589999999999999999999994 7899999998654
Q ss_pred c------------cccchHHHHHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC--
Q 000950 983 K------------WFGEGEKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK-- 1047 (1211)
Q Consensus 983 ~------------~~G~~e~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~-- 1047 (1211)
+ |+|..+ ...+.+| ++.+.|||+||||+.- +..+++.|+..+|...-.+.
T Consensus 563 kHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCC
Confidence 3 344333 2344444 4555699999999864 34567777777765433221
Q ss_pred -----ccEEEEEecCCC----------------------------CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1048 -----ERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1048 -----~~VlVIaTTN~p----------------------------~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
.+.++|+|+|-- ..+.|+|+.|++.+|.|...+.+...+|+..++.+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 468999998731 12446788899999999999999999999988875
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=1e-14 Score=186.43 Aligned_cols=211 Identities=21% Similarity=0.328 Sum_probs=133.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 982 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s 982 (1211)
..++|++.+.+.+.+.+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999998887631 1121 2454569999999999999999999987 56899999987543
Q ss_pred c-----cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC-cccCCccEE
Q 000950 983 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVL 1051 (1211)
Q Consensus 983 ~-----~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl-~~k~~~~Vl 1051 (1211)
. .+|....+ ...+....++.+.+||||||||.+ ++..+..+..++.+-... ++. ..-+-.+.+
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~~~v~~~Ll~~l~~g~l~-d~~g~~vd~rn~i 710 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----HPDVFNVLLQVLDDGRLT-DGQGRTVDFRNTV 710 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----CHHHHHHHHHHHhcCcee-cCCCeEEecCCcE
Confidence 2 12211110 122334445555689999999987 222222222222221111 110 001124678
Q ss_pred EEEecCCCC-------------------------CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc-------ccC-
Q 000950 1052 VLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELA- 1098 (1211)
Q Consensus 1052 VIaTTN~p~-------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~-------~l~- 1098 (1211)
||+|||... .+.+.|+.|++.++.|.+++.++..+|+...+... ++.
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l 790 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITL 790 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 999998621 13467777999999999999999999998877631 111
Q ss_pred --CcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHH
Q 000950 1099 --SDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREI 1133 (1211)
Q Consensus 1099 --~dvdL~~LA~~T~--GySgaDL~~L~~~Aa~~Airrl 1133 (1211)
++..++.|+...- .+..+.|+++++.....++.+.
T Consensus 791 ~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~ 829 (852)
T TIGR03346 791 ELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKK 829 (852)
T ss_pred cCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 2333555666532 4667788888887776666653
No 60
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.68 E-value=2e-16 Score=189.69 Aligned_cols=248 Identities=19% Similarity=0.240 Sum_probs=176.6
Q ss_pred HHHHHHHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHH
Q 000950 390 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 469 (1211)
Q Consensus 390 ~~~~~~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~ 469 (1211)
.++|.++.. .+++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||.||+| ....+
T Consensus 207 ~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTl 274 (489)
T CHL00195 207 EKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSL 274 (489)
T ss_pred HHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHH
Confidence 344444432 456666678899988887 8888888764322211 112343 3 3457899999999 68999
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCc
Q 000950 470 LAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEI 549 (1211)
Q Consensus 470 LaKALA~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 549 (1211)
||||+|++++++|+.+|...+++++-.|+
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGes--------------------------------------------------- 303 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGES--------------------------------------------------- 303 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChH---------------------------------------------------
Confidence 99999999999999999754444221111
Q ss_pred cccccCCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcc
Q 000950 550 STASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFF 629 (1211)
Q Consensus 550 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~ 629 (1211)
T Consensus 304 -------------------------------------------------------------------------------- 303 (489)
T CHL00195 304 -------------------------------------------------------------------------------- 303 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC---------hhhHHHHHHHHhcCCCCEEE
Q 000950 630 CTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVV 700 (1211)
Q Consensus 630 ~~~~~~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~---------~~~~~~i~s~L~~L~g~VvV 700 (1211)
...+..+|+.+.. .+|.||||||+|+++.+. .++...+...|..-..+|+|
T Consensus 304 -----------------e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 304 -----------------ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----------------HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1145566666655 789999999999977631 23333444444445678999
Q ss_pred EeeccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--H
Q 000950 701 IGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--D 778 (1211)
Q Consensus 701 Igs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--R 778 (1211)
||+||+++. +|+ |++| |
T Consensus 364 IaTTN~~~~------------------------------Ld~-------------------------------allR~GR 382 (489)
T CHL00195 364 VATANNIDL------------------------------LPL-------------------------------EILRKGR 382 (489)
T ss_pred EEecCChhh------------------------------CCH-------------------------------HHhCCCc
Confidence 999996544 333 8888 9
Q ss_pred HHHHhhhcchhhhccchhhHHHHHhhhC-CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcccccc
Q 000950 779 WKQQLERDVETLKGQSNIISIRSVLSRN-GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST 857 (1211)
Q Consensus 779 ferq~e~~Lpd~~gR~~Il~IhT~l~~~-~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~ 857 (1211)
|++.|++++|+...|.+|+++|.....+ ...+.+++.||..|.||+|+||+.+|.+|...|+....
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~------------- 449 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR------------- 449 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-------------
Confidence 9999999999999999999999764333 34688999999999999999999999999988874211
Q ss_pred CchhhhHHHHHhhhhhhhhh
Q 000950 858 ESIMYGLNILQGIQSESKSL 877 (1211)
Q Consensus 858 ~sI~~~~~df~~a~~eik~~ 877 (1211)
.+...+|..+...+.|+
T Consensus 450 ---~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 450 ---EFTTDDILLALKQFIPL 466 (489)
T ss_pred ---CcCHHHHHHHHHhcCCC
Confidence 13466777666666554
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=9.9e-16 Score=193.00 Aligned_cols=185 Identities=25% Similarity=0.388 Sum_probs=140.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..+++++|.++....+.+.+.. +..+++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3677899999998887776642 123579999999999999999999987 6789999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~-~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
++..+. ..+.|+.++.++.+|..+.+..+.||||||||.|++.....+. ....+ ++.. .+ .++.+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~-~L~~---~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN-LLKP---AL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH-HHHH---HH------hCCCeEE
Confidence 988876 4688999999999999998888999999999999865432221 12221 2221 11 2367999
Q ss_pred EEecCCC-----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcCCCcH
Q 000950 1053 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1053 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~----l-~~dvdL~~LA~~T~GySg 1115 (1211)
|++|+.. ...|+++.|||. .|.++.|+.+++.+|++.+..... + ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 468999999995 799999999999999998776521 1 244456667777666543
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=6.3e-16 Score=166.90 Aligned_cols=197 Identities=22% Similarity=0.294 Sum_probs=126.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999988776532221 234468999999999999999999999999999988765421
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh-ccCCcccC------CccEEEEEecCC
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN-WDGLRTKD------KERVLVLAATNR 1058 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~-ldgl~~k~------~~~VlVIaTTN~ 1058 (1211)
...+..++.... ...||||||||+| +...++.+...++.+... +-|..... -.++-+|+||++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122334443332 3579999999998 555566666666655432 22221111 146889999999
Q ss_pred CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1059 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1059 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
...|...++.||.....+..++.++..+|++.-....++. ++.-..+||..+.|. ++-..+|++.+
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll~rv 225 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLLRRV 225 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHH
Confidence 9999999999999888999999999999998776655544 344578899999885 44444444443
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.66 E-value=2.7e-14 Score=181.92 Aligned_cols=207 Identities=22% Similarity=0.281 Sum_probs=129.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 982 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~---~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s 982 (1211)
..++|++...+.+.+.+... +.++. +|...+||+||+|+|||++|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887632 12222 232348999999999999999999998 45789999877532
Q ss_pred c------------cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC-cccCCcc
Q 000950 983 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKER 1049 (1211)
Q Consensus 983 ~------------~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl-~~k~~~~ 1049 (1211)
. |+|..+. ..+....++.+.+||+|||||.. .+.....+..++...... ++. ..-+-.+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~~~v~~~Llq~ld~g~l~-d~~Gr~vd~~n 709 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----HPDVLELFYQVFDKGVME-DGEGREIDFKN 709 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----CHHHHHHHHHHhhcceee-cCCCcEEeccc
Confidence 1 2332211 12334445667799999999976 222222222222221110 100 0001246
Q ss_pred EEEEEecCCCC-----------------------------CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc-----
Q 000950 1050 VLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----- 1095 (1211)
Q Consensus 1050 VlVIaTTN~p~-----------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~----- 1095 (1211)
.+||+|||... .+.|+|+.|++ +|.|.+.+.++..+|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899987411 24567788996 88999999999999998877542
Q ss_pred ---ccC---CcccHHHHHHHcCC--CcHHHHHHHHHHHHhhhhHH
Q 000950 1096 ---ELA---SDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1096 ---~l~---~dvdL~~LA~~T~G--ySgaDL~~L~~~Aa~~Airr 1132 (1211)
++. ++..++.|+....+ |-.+.|+.+++.-...++.+
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111 23335566666543 45677777777666555554
No 64
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-15 Score=174.25 Aligned_cols=220 Identities=16% Similarity=0.294 Sum_probs=169.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|+.++...+.++.|.+-+..++...+.|.+.|.... +|.|||||||||||+++.|+|+++++.++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 378999999999999999999999999999998876554 889999999999999999999999999999998775432
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc-----hHH-HHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-----EHE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~-----~~e-~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
.+ ++.+...+. ..+||+|.+||.=+.-+.... .+. ..+-.+..|+..+||+......--+||.|||.
T Consensus 275 ---~d--Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---SD--LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---HH--HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 666654332 348999999998764322111 111 12245677999999999887677899999999
Q ss_pred CCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCC--CcHHHHHHHHHH---HHhhhhH
Q 000950 1059 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIR 1131 (1211)
Q Consensus 1059 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~G--ySgaDL~~L~~~---Aa~~Air 1131 (1211)
.+.||||++| |.+..|++..-+.+.-..++..++.-.. +..-+.++....++ .+++|+...... .+-.+++
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk 425 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALK 425 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHH
Confidence 9999999999 9999999999999999999999986532 22334555555544 589988754332 3555666
Q ss_pred HHHH
Q 000950 1132 EILE 1135 (1211)
Q Consensus 1132 rlle 1135 (1211)
++++
T Consensus 426 ~Lv~ 429 (457)
T KOG0743|consen 426 GLVE 429 (457)
T ss_pred HHHH
Confidence 6654
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.9e-15 Score=169.27 Aligned_cols=181 Identities=25% Similarity=0.443 Sum_probs=133.3
Q ss_pred CCCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk---~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..++++++|++.+. ..|.+.+.. + ...+++||||||||||+||+.||...+.+|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35789999998886 345555541 2 2357999999999999999999999999999998643
Q ss_pred cccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec-
Q 000950 982 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1056 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT- 1056 (1211)
.+-+-++.+|+.|++.. ..||||||||++ +...|.+ |+-.+ +++.|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccC
Confidence 34567899999996543 379999999988 3222322 23222 33678888877
Q ss_pred -CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh--cccC------CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1057 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1057 -N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k--~~l~------~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
|+.+.+.+++++|. +++.+...+.++..++++..+.. ..+. ++.-++.|+..++|...+-|.. ++.++
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~-LE~~~ 217 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL-LELAA 217 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH-HHHHH
Confidence 77789999999998 78999999999999999984433 2222 3445778889988876655543 34443
No 66
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.63 E-value=8.3e-16 Score=198.81 Aligned_cols=132 Identities=19% Similarity=0.169 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccCh---hhHHHHHHHHhcC-----CCCEEEEeeccCCCCccccCCCCC
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGG 718 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~~---~~~~~i~s~L~~L-----~g~VvVIgs~~~~d~~k~k~~~~~ 718 (1211)
..-+..+|+.+.. .+|.||||||||. |+.+. ...+.+...|+.. ..+||||||||++|
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD---------- 1783 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ---------- 1783 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcc----------
Confidence 3458999999988 8999999999999 56432 2356666677654 23799999999544
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchh
Q 000950 719 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 719 ~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~I 796 (1211)
.+|| ||+| ||++++++++|+..+|..|
T Consensus 1784 --------------------~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~ki 1812 (2281)
T CHL00206 1784 --------------------KVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRKH 1812 (2281)
T ss_pred --------------------cCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHHH
Confidence 4554 9999 9999999999999999999
Q ss_pred hHHHHHhhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 797 ISIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 797 l~IhT~l~~~~l--~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
+.|+...+.-.+ .+++++.+|..|.||+||||+.||++|++.|+.+.
T Consensus 1813 L~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1813 FFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 998643333333 34689999999999999999999999999999854
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.3e-14 Score=164.37 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=137.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 986 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G 986 (1211)
+|++++|++++++.|...+.....+ ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999999877532111 223467999999999999999999999998877766543221 11
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCC-cc----cCCccEEEEEecCCC
Q 000950 987 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1059 (1211)
Q Consensus 987 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl-~~----k~~~~VlVIaTTN~p 1059 (1211)
.+...+... ..+.+|||||||.+. ...++.+..+++.....+ ... .. ....++.+|++|+++
T Consensus 71 ----~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 ----DLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ----hHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 122222222 246899999999983 223333444433322111 100 00 011347899999999
Q ss_pred CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1060 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1060 ~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
..+++++++||...+.+..|+.+++.++++..+....+. ++..++.|+..+.|+. +.+.+++..++.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~ 207 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRD 207 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 999999999998889999999999999999988765443 4455788999998875 555677776543
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.6e-14 Score=164.24 Aligned_cols=201 Identities=21% Similarity=0.256 Sum_probs=141.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|++++|+++.++.+..++..... . ..++.++||+||||||||++|+++|++++..+..++++.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 235578999999999999999999999999888776554321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh--ccCCccc-----CCccEEEEEecCC
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTK-----DKERVLVLAATNR 1058 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~--ldgl~~k-----~~~~VlVIaTTN~ 1058 (1211)
...+..++... ..++||||||||.+. ...++.+..+++..... ++..... .-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12334444432 246899999999982 22333333333332111 1110000 1134788999999
Q ss_pred CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1059 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1059 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+..+++.+++||...+.++.|+.+++.+|++......++. ++..+..|+..+.|+. +.+..++..+...+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999988876554 4455788999998865 56666666554433
No 69
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2e-15 Score=184.95 Aligned_cols=221 Identities=23% Similarity=0.327 Sum_probs=170.4
Q ss_pred ccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 000950 403 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 482 (1211)
Q Consensus 403 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 482 (1211)
+-.-.++.|+|+++--- |..|.-|.+-+- .||+++. |.+-=.-.-+.+||+|||| .-...||||.|-+-|+++
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCce
Confidence 33467888999999998 999999999876 7999765 6443355568899999999 689999999999999998
Q ss_pred EEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCC
Q 000950 483 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 562 (1211)
Q Consensus 483 LilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 562 (1211)
+-+-. +|+ .-
T Consensus 373 ~svSG----------SEF---------vE--------------------------------------------------- 382 (774)
T KOG0731|consen 373 FSVSG----------SEF---------VE--------------------------------------------------- 382 (774)
T ss_pred eeech----------HHH---------HH---------------------------------------------------
Confidence 75432 111 00
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCC
Q 000950 563 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 642 (1211)
Q Consensus 563 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 642 (1211)
.|+|.. +
T Consensus 383 ---~~~g~~----------------------------a------------------------------------------ 389 (774)
T KOG0731|consen 383 ---MFVGVG----------------------------A------------------------------------------ 389 (774)
T ss_pred ---Hhcccc----------------------------h------------------------------------------
Confidence 011100 0
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc----------cC---hhhHHHHHHHHhcC--CCCEEEEeeccCC
Q 000950 643 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN---NDAYGALKSKLENL--PSNVVVIGSHTQL 707 (1211)
Q Consensus 643 ~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~----------~~---~~~~~~i~s~L~~L--~g~VvVIgs~~~~ 707 (1211)
-.++.||..+.. ..|.||||++||. ++ +| .+..+-+--.++.+ .+.||||++||++
T Consensus 390 -----srvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 390 -----SRVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred -----HHHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 056778888877 8999999999998 44 22 34445555555555 3489999999976
Q ss_pred CCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhh
Q 000950 708 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 785 (1211)
Q Consensus 708 d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~ 785 (1211)
|- +|+ |||| ||+|++.+
T Consensus 461 d~----------------------ld~---------------------------------------allrpGRfdr~i~i 479 (774)
T KOG0731|consen 461 DI----------------------LDP---------------------------------------ALLRPGRFDRQIQI 479 (774)
T ss_pred cc----------------------cCH---------------------------------------HhcCCCccccceec
Confidence 65 444 9999 99999999
Q ss_pred cchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 786 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 786 ~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
++||+++|.+|+++|-+...-..+++++..||.+|.||+||||..+|++|+..|.++.
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 9999999999999996522222588999999999999999999999999999998754
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.60 E-value=3.7e-15 Score=175.21 Aligned_cols=234 Identities=22% Similarity=0.281 Sum_probs=169.5
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 485 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 485 (1211)
+..+++|+.+..+ |..+.-|.++....+++++.- +++ +. ..+.|||.||+| ....+||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4568999999888 888999999988888887652 332 22 235799999999 689999999999999887766
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCee
Q 000950 486 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 565 (1211)
Q Consensus 486 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 565 (1211)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5322211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchh
Q 000950 566 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 645 (1211)
Q Consensus 566 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 645 (1211)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 01110
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEeeccCCCCccc
Q 000950 646 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 712 (1211)
Q Consensus 646 ~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L~-----g~VvVIgs~~~~d~~k~ 712 (1211)
....+..+|+.+.. ..|.||||||+|.++.. ..+.-..+...|..+. ++|+|||++|+++.
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~--- 282 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI--- 282 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh---
Confidence 01145667777765 78999999999996542 1223223333333332 48999999995443
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhh
Q 000950 713 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 790 (1211)
Q Consensus 713 k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~ 790 (1211)
+|+ |++| ||++.+++++|+.
T Consensus 283 ---------------------------ld~-------------------------------allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 283 ---------------------------LDP-------------------------------AILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred ---------------------------CCH-------------------------------HHcCCccCceEEEECCCCH
Confidence 332 8888 9999999999999
Q ss_pred hccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHh
Q 000950 791 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 869 (1211)
Q Consensus 791 ~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~ 869 (1211)
..|.+|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...+|+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999964 3344 458899999999999999999999999999987421 1245677777
Q ss_pred hhhhhhh
Q 000950 870 IQSESKS 876 (1211)
Q Consensus 870 a~~eik~ 876 (1211)
+...+.+
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 7665544
No 71
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.60 E-value=1.9e-14 Score=175.27 Aligned_cols=218 Identities=22% Similarity=0.306 Sum_probs=146.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 974 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 974 (1211)
..+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 36899999999999988865421 123579999999999999999998653 368999
Q ss_pred Eecccc-------ccccccchHH----------------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHH
Q 000950 975 ISMSSI-------TSKWFGEGEK----------------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1031 (1211)
Q Consensus 975 I~~seL-------~s~~~G~~e~----------------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~i 1031 (1211)
++|... ....++.... .....+. +...++||||||+.| ++..+..+.++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L-----~~~~q~~LL~~ 198 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGEL-----HPVQMNKLLKV 198 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhC-----CHHHHHHHHHH
Confidence 998642 1111111000 0011222 223489999999998 44455555555
Q ss_pred HHhhhhhccC-----Cc------------ccCCccEEEE-EecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHh
Q 000950 1032 KNEFMVNWDG-----LR------------TKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1032 l~~LL~~ldg-----l~------------~k~~~~VlVI-aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
+++....+.+ .. ..-+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHH
Confidence 5543332221 00 0011234444 55678999999999998 5788888999999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 000950 1094 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1172 (1211)
Q Consensus 1094 k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Al 1172 (1211)
+..+. ++..++.|+..+ .+++++.++++.|+..+..+ ....|+.+|++.++
T Consensus 278 k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl 329 (531)
T TIGR02902 278 KIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVA 329 (531)
T ss_pred HcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHh
Confidence 86644 444566677665 37899999999988654332 11358888888887
Q ss_pred H
Q 000950 1173 E 1173 (1211)
Q Consensus 1173 e 1173 (1211)
.
T Consensus 330 ~ 330 (531)
T TIGR02902 330 E 330 (531)
T ss_pred C
Confidence 6
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.59 E-value=4.1e-15 Score=174.94 Aligned_cols=216 Identities=21% Similarity=0.344 Sum_probs=161.2
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhcccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 000950 406 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 484 (1211)
Q Consensus 406 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLi 484 (1211)
-+.-+|+|++.--+ |..|.-|..+.-..|++++.- ++ .+. ..+.|||.||+| ....+||||+|++.++.++-
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~--Gl~-~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQI--GID-PPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhc--CCC-CCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 34678999999888 999999999998899998762 33 233 457899999999 79999999999998877665
Q ss_pred EecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCe
Q 000950 485 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 564 (1211)
Q Consensus 485 lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 564 (1211)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 53211000
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCch
Q 000950 565 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 644 (1211)
Q Consensus 565 v~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~ 644 (1211)
+|+|.
T Consensus 218 -k~~ge-------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 -KYLGE-------------------------------------------------------------------------- 222 (398)
T ss_pred -Hhcch--------------------------------------------------------------------------
Confidence 01110
Q ss_pred hHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHH---HHHHhcC--CCCEEEEeeccCCCCcc
Q 000950 645 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGAL---KSKLENL--PSNVVVIGSHTQLDSRK 711 (1211)
Q Consensus 645 ~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--------~~~~~~i---~s~L~~L--~g~VvVIgs~~~~d~~k 711 (1211)
....+..+|+.+.. .+|.||||||+|.++... .+....+ ...++.+ ..+|+||++||++|.
T Consensus 223 -~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~-- 296 (398)
T PTZ00454 223 -GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT-- 296 (398)
T ss_pred -hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh--
Confidence 11245667777765 799999999999965421 1222223 3333433 248999999995544
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchh
Q 000950 712 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 789 (1211)
Q Consensus 712 ~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd 789 (1211)
+|+ |++| ||++++++++|+
T Consensus 297 ----------------------------LDp-------------------------------AllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 297 ----------------------------LDP-------------------------------ALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred ----------------------------CCH-------------------------------HHcCCCcccEEEEeCCcC
Confidence 443 8888 999999999999
Q ss_pred hhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 790 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 790 ~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
...|..|+++|+. ..++ .+++++.++..|.||+|+||..+|.+|...|+.+
T Consensus 318 ~~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 318 RRQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999975 2334 6789999999999999999999999999999865
No 73
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=2.3e-14 Score=181.71 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=141.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~-------- 981 (1211)
++.|++++++.+.+++.....+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4889999999999987643221 11 1223799999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 000950 982 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 982 -s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~-----LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
..|.|.....+.+.|..+....| ||||||||.+...... ....++..++.. |+....+... +-.++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~~-d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVPF-DLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCcee-ccCCEEEEEe
Confidence 24566666677788888766565 8999999999643211 112222222221 1111111111 1257899999
Q ss_pred cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh-----cccC------CcccHHHHHH-HcCCCcHHHHHHHHH
Q 000950 1056 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIAN-MADGYSGSDLKNLCV 1123 (1211)
Q Consensus 1056 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k-----~~l~------~dvdL~~LA~-~T~GySgaDL~~L~~ 1123 (1211)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++.. ..+. ++..+..|+. .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 58899999999999999887632 1221 2223444443 233444566666666
Q ss_pred HHHhhhhHHH
Q 000950 1124 TAAHCPIREI 1133 (1211)
Q Consensus 1124 ~Aa~~Airrl 1133 (1211)
..+..+.+++
T Consensus 549 ~~~~~~~~~~ 558 (775)
T TIGR00763 549 KICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHH
Confidence 6554444443
No 74
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=3.6e-14 Score=178.00 Aligned_cols=197 Identities=20% Similarity=0.302 Sum_probs=143.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 976 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~ 976 (1211)
.++.++|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 466788999988888886652 123578999999999999999999875 45556666
Q ss_pred ccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 977 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 977 ~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.....+.+.....++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888999999999998888999999999999876643222222223333332 236799999
Q ss_pred ecCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCccc-----HHHHHHHcC-----CCcHHHHH
Q 000950 1055 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-----LEGIANMAD-----GYSGSDLK 1119 (1211)
Q Consensus 1055 TTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvd-----L~~LA~~T~-----GySgaDL~ 1119 (1211)
+|+.++ ..|+++.||| ..|.++.|+.+++.+||+.+..+.....++. +..++..+. .+.+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998754 6799999999 4899999999999999998876644333333 333444343 34556677
Q ss_pred HHHHHHHh
Q 000950 1120 NLCVTAAH 1127 (1211)
Q Consensus 1120 ~L~~~Aa~ 1127 (1211)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 77777764
No 75
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-14 Score=169.83 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=160.2
Q ss_pred ccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCC
Q 000950 410 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 489 (1211)
Q Consensus 410 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~ 489 (1211)
+|-|+.||.- +..|..|.+++-..+...+. | .+|.+.-+.|||.||+| ....||+||+|-+.+|.+.-+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~--F-~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDL--F-LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHh--h-hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5789999998 89999999999888877765 2 48888899999999999 6899999999999999876554443
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeeeec
Q 000950 490 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 569 (1211)
Q Consensus 490 ~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g 569 (1211)
|++.| +|
T Consensus 222 LtsK~-------------------------------------------------------------------------~G 228 (428)
T KOG0740|consen 222 LTSKY-------------------------------------------------------------------------VG 228 (428)
T ss_pred hhhhc-------------------------------------------------------------------------cC
Confidence 33322 11
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHHHH
Q 000950 570 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 649 (1211)
Q Consensus 570 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k~~ 649 (1211)
+..-+
T Consensus 229 ---------------------------------------------------------------------------e~eK~ 233 (428)
T KOG0740|consen 229 ---------------------------------------------------------------------------ESEKL 233 (428)
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 11237
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc-ChhhHH-HHHHHHhcC----------CCCEEEEeeccCCCCccccCCCC
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTG-NNDAYG-ALKSKLENL----------PSNVVVIGSHTQLDSRKEKSHPG 717 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~-~~~~~~-~i~s~L~~L----------~g~VvVIgs~~~~d~~k~k~~~~ 717 (1211)
+.+||+|+.. .+|.|+||+|||.+|+. +...+. +-+.+.+.| ..+|+||||||
T Consensus 234 vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------ 298 (428)
T KOG0740|consen 234 VRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------ 298 (428)
T ss_pred HHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------
Confidence 8899999998 99999999999999982 111111 111122222 34999999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchhh
Q 000950 718 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 797 (1211)
Q Consensus 718 ~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~Il 797 (1211)
+|+.+|. |.+|||-+-+|+++||...|..|+
T Consensus 299 ------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~~ 329 (428)
T KOG0740|consen 299 ------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLLW 329 (428)
T ss_pred ------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHHH
Confidence 5666664 777888888888888888877655
Q ss_pred HHHHHhhh--CCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 798 SIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 798 ~IhT~l~~--~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
+= .|.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+.
T Consensus 330 ~~--ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 330 KQ--LLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred HH--HHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 42 2333 456888999999999999999999999999876554
No 76
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-14 Score=155.52 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCccccC
Q 000950 648 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 648 ~~~~~l~evl~sesk~~P~Ilf~~die~~l~--------~~~~~~~~i~s~L~~L~g-----~VvVIgs~~~~d~~k~k~ 714 (1211)
+.+.+||=++.+ +.|.|||+|+||.+=. +..+.-......|.+|.| ++-||.|||+.|-
T Consensus 227 rmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----- 298 (404)
T KOG0728|consen 227 RMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----- 298 (404)
T ss_pred HHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc-----
Confidence 378899999998 9999999999998422 345666666667777766 9999999998665
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 792 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~g 792 (1211)
+|| |||| |.+|.+|||-|++++
T Consensus 299 -----------------ld~---------------------------------------allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 299 -----------------LDP---------------------------------------ALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred -----------------ccH---------------------------------------hhcCCCcccccccCCCCCHHH
Confidence 554 9999 999999999999999
Q ss_pred cchhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhh
Q 000950 793 QSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 871 (1211)
Q Consensus 793 R~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~ 871 (1211)
|.+||+||.+ |. -.-..+|..+|++..|.+||++.++|++|--+|++.. .+-++..||+.+.
T Consensus 323 r~~ilkihsrkmn--l~rgi~l~kiaekm~gasgaevk~vcteagm~alrer---------------rvhvtqedfemav 385 (404)
T KOG0728|consen 323 RLDILKIHSRKMN--LTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAV 385 (404)
T ss_pred HHHHHHHhhhhhc--hhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh---------------hccccHHHHHHHH
Confidence 9999999987 32 2256789999999999999999999999999998732 2345667777765
Q ss_pred hh
Q 000950 872 SE 873 (1211)
Q Consensus 872 ~e 873 (1211)
.+
T Consensus 386 ~k 387 (404)
T KOG0728|consen 386 AK 387 (404)
T ss_pred HH
Confidence 43
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=2.6e-13 Score=172.92 Aligned_cols=196 Identities=19% Similarity=0.319 Sum_probs=142.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..+++++|.++....+.+.+.. +..+++||+||||+|||++|+.+|..+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4678899999987777665541 123579999999999999999999886 3557888
Q ss_pred ecccccc--ccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
+...+.. .+.|+.+..++.+|..+++. .+.||||||||.|.+.+...+.+...+ ++ .-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~L---kp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-LL---KPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-Hh---hHHh------hCCCeEE
Confidence 8877653 57788899999999998754 578999999999987554322222221 21 1111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcCCCcH-----HH
Q 000950 1053 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG-----SD 1117 (1211)
Q Consensus 1053 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~----l-~~dvdL~~LA~~T~GySg-----aD 1117 (1211)
|+||+.. ..+|+++.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|.. ..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 9999753 46899999999 5899999999999999877765422 1 145668888899988743 33
Q ss_pred HHHHHHHHH
Q 000950 1118 LKNLCVTAA 1126 (1211)
Q Consensus 1118 L~~L~~~Aa 1126 (1211)
--.|+.+|+
T Consensus 399 AIdlldea~ 407 (852)
T TIGR03345 399 AVSLLDTAC 407 (852)
T ss_pred HHHHHHHHH
Confidence 334455554
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.52 E-value=2.3e-14 Score=173.38 Aligned_cols=216 Identities=23% Similarity=0.358 Sum_probs=155.6
Q ss_pred cCCCccccccccccccchhhHHHHHHhhhhhcccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 000950 404 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 482 (1211)
Q Consensus 404 ~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 482 (1211)
...+..+++|++++-+ ++.|.-|..... .|++++ |.+++. ...+.|||.||+| .-+.+||||||+++++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455779999999988 999988887766 377754 333332 3346799999999 689999999999998887
Q ss_pred EEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCC
Q 000950 483 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 562 (1211)
Q Consensus 483 LilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 562 (1211)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6554321100
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCC
Q 000950 563 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 642 (1211)
Q Consensus 563 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 642 (1211)
.|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCC
Q 000950 643 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDS 709 (1211)
Q Consensus 643 ~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~-----------~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~ 709 (1211)
..-.+..+|+.+.. ..|.||||||+|.+.... .+..+.|...++.+. ++|+|||+||+++.
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 00134566666655 789999999999965421 123333334444443 47999999995444
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcc
Q 000950 710 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 787 (1211)
Q Consensus 710 ~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~L 787 (1211)
+|+ |++| ||++++++++
T Consensus 206 ------------------------------ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 206 ------------------------------LDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred ------------------------------cCH-------------------------------HHhcCCcceEEEEcCC
Confidence 443 8888 9999999999
Q ss_pred hhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 788 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 788 pd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
|+...|.+|+++|.. ..++ .+.++..+|..+.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999864 2233 577899999999999999999999999887765
No 79
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.5e-14 Score=158.43 Aligned_cols=142 Identities=22% Similarity=0.338 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCccccC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~---------~~~~~~~~i~s~L~~L-----~g~VvVIgs~~~~d~~k~k~ 714 (1211)
++.+||.|+.+ +.|.|+|||+||. ++ +..++-......|.+| +|-|-||-|||+.++
T Consensus 266 lvRqlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~----- 336 (440)
T KOG0726|consen 266 LVRELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET----- 336 (440)
T ss_pred HHHHHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc-----
Confidence 88999999998 9999999999999 54 3355555556666666 459999999998777
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 792 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~g 792 (1211)
+|| ||.| |.+|.++|++||++.
T Consensus 337 -----------------LDP---------------------------------------aLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 337 -----------------LDP---------------------------------------ALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred -----------------cCH---------------------------------------hhcCCCccccccccCCCchhh
Confidence 565 8999 999999999999999
Q ss_pred cchhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhh
Q 000950 793 QSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 871 (1211)
Q Consensus 793 R~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~ 871 (1211)
++.|++|||- |.- -.++.|++|-....-++||||.++|++|-..|++.+ .++++..||+.+.
T Consensus 361 kkkIf~IHTs~Mtl--~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---------------Rm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 361 KKKIFQIHTSRMTL--AEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---------------RMKVTMEDFKKAK 423 (440)
T ss_pred hceeEEEeecccch--hccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---------------HhhccHHHHHHHH
Confidence 9999999995 431 278999999999999999999999999999998743 2456778887665
Q ss_pred h
Q 000950 872 S 872 (1211)
Q Consensus 872 ~ 872 (1211)
.
T Consensus 424 e 424 (440)
T KOG0726|consen 424 E 424 (440)
T ss_pred H
Confidence 4
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2e-13 Score=165.79 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=133.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 36899999999999999998763 223456899999999999999999999876
Q ss_pred ---------------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHH
Q 000950 971 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1031 (1211)
Q Consensus 971 ---------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~i 1031 (1211)
.++.++... ...-..++.+.+.+.. ....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 223333221 0112345555554432 234699999999982 123
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000950 1032 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1110 (1211)
Q Consensus 1032 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T 1110 (1211)
.+.|+..++. ...++++|.+|+.++.|.+.+++|+ ..+.|..++.++..+.++.++..+++. ++..+..|+..+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455555554 2366888999999999999999999 789999999999999999988877654 334467788888
Q ss_pred CCCcHHHHHHHHHHHH
Q 000950 1111 DGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1111 ~GySgaDL~~L~~~Aa 1126 (1211)
+|- .++..+++..+.
T Consensus 216 ~Gs-~RdALsLLdQai 230 (700)
T PRK12323 216 QGS-MRDALSLTDQAI 230 (700)
T ss_pred CCC-HHHHHHHHHHHH
Confidence 774 455555555443
No 81
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.51 E-value=4.5e-14 Score=167.49 Aligned_cols=129 Identities=26% Similarity=0.332 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC-----CCCEEEEeeccCCCCccccCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSH 715 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L-----~g~VvVIgs~~~~d~~k~k~~ 715 (1211)
.+..+|+.+.. ..|.||||||+|.++.. ..+....+...|..+ .++|+||++||++|.
T Consensus 264 ~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~------ 334 (438)
T PTZ00361 264 LVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES------ 334 (438)
T ss_pred HHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH------
Confidence 46677777765 78999999999997642 223333344444444 358999999996554
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhcc
Q 000950 716 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 793 (1211)
Q Consensus 716 ~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR 793 (1211)
+|+ |++| ||++++++++||...|
T Consensus 335 ----------------LDp---------------------------------------aLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 335 ----------------LDP---------------------------------------ALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred ----------------hhH---------------------------------------HhccCCeeEEEEEeCCCCHHHH
Confidence 333 8887 9999999999999999
Q ss_pred chhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 794 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 794 ~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
.+|+++|+. .-.+ ++++++.++..+.||+|+||+.+|++|...|+++.
T Consensus 360 ~~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 360 RRIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred HHHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999975 2234 67899999999999999999999999999998753
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.1e-13 Score=160.76 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+...|...+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 36899999999999999887762 2233569999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
|+.++++. ...-..++.+.+.+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 33333211 011234455544443 2234699999999982 12344455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+++|++|+.++.+.+++++|+ .++.|..++.++-.++++.++..+++. ++..+..|+..++|. .
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~ 216 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-V 216 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-H
Confidence 55543 3367889999999999999999999 678999999999999999998887654 556688899988885 4
Q ss_pred HHHHHHHHHH
Q 000950 1116 SDLKNLCVTA 1125 (1211)
Q Consensus 1116 aDL~~L~~~A 1125 (1211)
++..++++.+
T Consensus 217 RdAL~lLeq~ 226 (484)
T PRK14956 217 RDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.50 E-value=3.3e-13 Score=148.57 Aligned_cols=189 Identities=24% Similarity=0.325 Sum_probs=141.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
...|++++|+++++++|.-++.....+ ....-++||+||||.|||+||.-||+++|.++...+++.+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 357999999999999999888753333 234568999999999999999999999999998887766532
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc-CCccc------CCccEEEEEecC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTK------DKERVLVLAATN 1057 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld-gl~~k------~~~~VlVIaTTN 1057 (1211)
.| -+..++.... ...||||||||+| ++...+.+--+++.|...+- |-.+. +-.++-+|++|.
T Consensus 91 ~g----DlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 PG----DLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred hh----hHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 11 2333433322 2479999999999 44455566556665544321 11111 125688999999
Q ss_pred CCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1058 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1058 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
+...|...++.||..+..+..++.++..+|+........+. ++....++|+.+.|...
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999987766554 34457889999988644
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=5.1e-13 Score=170.51 Aligned_cols=185 Identities=22% Similarity=0.341 Sum_probs=140.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..++.++|.++....+.+.+.. +..+++||+||||||||++|+++|... +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3577899999999999887752 234689999999999999999999886 4789999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
++..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+..... .++... + .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp~---l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKPA---L------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHHH---H------hCCCcEEE
Confidence 988776 46788899999999999988888999999999998765433322111 122111 1 23678999
Q ss_pred EecCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh----ccc-CCcccHHHHHHHcCCCcH
Q 000950 1054 AATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1054 aTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k----~~l-~~dvdL~~LA~~T~GySg 1115 (1211)
++|+..+ ..++++.+||. .|.+..|+.++...|++.+... ..+ .++..+..++.++.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998653 57899999994 6899999999999999876543 222 244557788888887754
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=5.8e-13 Score=163.57 Aligned_cols=185 Identities=21% Similarity=0.237 Sum_probs=133.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999998752 2334568999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++... ...-..++.+++.+.. ....||||||+|.|- . ...+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----~-------~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----N-------HAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----H-------HHHHHHH
Confidence 33333221 1122345556655432 234699999999982 1 1223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..|+. ....+++|.+||.++.|.+.+++|| ..|.|..++.++..++|+.++..+++. ++..+..|++..+|...
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 44433 2356899999999999999999999 789999999999999999999887764 55568888999988654
Q ss_pred HHHHHHHHHHH
Q 000950 1116 SDLKNLCVTAA 1126 (1211)
Q Consensus 1116 aDL~~L~~~Aa 1126 (1211)
+..+++..+.
T Consensus 216 -dALsLLdQAi 225 (830)
T PRK07003 216 -DALSLTDQAI 225 (830)
T ss_pred -HHHHHHHHHH
Confidence 4445544444
No 86
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=7.7e-13 Score=169.40 Aligned_cols=184 Identities=21% Similarity=0.360 Sum_probs=137.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..++.++|.+.....+.+.+.. +..++++|+||||+|||++++++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3577899999987777776641 223578999999999999999999886 6778888
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
+...+. ..+.|+.+..++.+|..+.+. .+.||||||||.|++.....+..... +.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 887765 457788899999999988764 58999999999998644332222222 2222111 2367999
Q ss_pred EEecCCC-----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCCc
Q 000950 1053 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1053 IaTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-----~dvdL~~LA~~T~GyS 1114 (1211)
|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+..+.... .+..+..++.++.+|.
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999865 468999999995 68999999999999999987764432 3445677777777764
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=4.4e-13 Score=171.30 Aligned_cols=183 Identities=22% Similarity=0.362 Sum_probs=134.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..++.++|.+.....+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3577899999887777776642 122579999999999999999999987 6788999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
++..+. .++.|+.+..++.+|..+.+ ..+.||||||+|.|.+.....+.....+ ++... + .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~-~lkp~---l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN-MLKPA---L------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHH-Hhcch---h------hcCCCeE
Confidence 888765 45778889999999988654 4678999999999986654333322222 22111 1 2367999
Q ss_pred EEecCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 000950 1053 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1053 IaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-----~dvdL~~LA~~T~Gy 1113 (1211)
|++|+..+ .+|+++.|||. .|.+..|+.+++..|++.+.++.... .+..+...+.++.+|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998765 58999999995 68899999999999999887653322 233344444555544
No 88
>CHL00176 ftsH cell division protein; Validated
Probab=99.47 E-value=1.8e-13 Score=169.10 Aligned_cols=219 Identities=20% Similarity=0.309 Sum_probs=156.4
Q ss_pred ccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 000950 403 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 482 (1211)
Q Consensus 403 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 482 (1211)
+....+..++|+.+.-+ +..|.-|.+... .|++++. |..-=....+.|||.||+| .-+.+||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 33456778999999988 888888888765 3777554 3332234457799999999 789999999999998887
Q ss_pred EEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCC
Q 000950 483 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 562 (1211)
Q Consensus 483 LilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 562 (1211)
+-++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6554321100
Q ss_pred CeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCC
Q 000950 563 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 642 (1211)
Q Consensus 563 drv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 642 (1211)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChh---hHHHHHHHHhcCC--CCEEEEeeccCCCC
Q 000950 643 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNND---AYGALKSKLENLP--SNVVVIGSHTQLDS 709 (1211)
Q Consensus 643 ~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~--------~~~~---~~~~i~s~L~~L~--g~VvVIgs~~~~d~ 709 (1211)
..-.++.+|+.+.. ..|.||||||+|.+.. ++.+ ..+.+...++.+. .+|+|||+||+++.
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 00134555665544 7899999999999542 1222 2233333334332 38999999995443
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcc
Q 000950 710 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 787 (1211)
Q Consensus 710 ~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~L 787 (1211)
+|+ ||+| ||++++++++
T Consensus 334 ------------------------------LD~-------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 334 ------------------------------LDA-------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred ------------------------------hhh-------------------------------hhhccccCceEEEECC
Confidence 332 8888 9999999999
Q ss_pred hhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 788 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 788 pd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
|+.+.|..|++.|... ..+ +++++..||..|.||+|+||+.+|++|+..+.++
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999653 333 6789999999999999999999999999887654
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.46 E-value=2.1e-12 Score=153.16 Aligned_cols=181 Identities=24% Similarity=0.421 Sum_probs=127.4
Q ss_pred CCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 906 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~---L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+|++++|++.+... |.+.+.. . ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998666 7776642 1 22479999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec--
Q 000950 983 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1056 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT-- 1056 (1211)
....++.++..+.. ....||||||||.+. ...+ +.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 12345556655532 245899999999882 1112 222222222 346666654
Q ss_pred CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc--cc--CCcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1057 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1057 N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~--~l--~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
|....+++++++|+ ..+.+..++.++...+++..+... .+ .++..++.|+..+.| ..+.+.++++.++.
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44568999999999 789999999999999999987652 11 234446778888865 45566666666643
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.46 E-value=2.4e-12 Score=144.67 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=141.8
Q ss_pred CCCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecc
Q 000950 905 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 978 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~---L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---fi~I~~s 978 (1211)
..+++|++|++.+..+ |+.++. +. ..+.++||||||||||+||+.|+....-+ |+.+++.
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 3567788888776533 333343 12 23589999999999999999999988655 7777653
Q ss_pred ccccccccchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 979 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
. ..-+-++.+|+.+++. ...|||||||+++ +.. -...|+-.+ +++.|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----Nks-------QQD~fLP~V------E~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKS-------QQDTFLPHV------ENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhh-------hhhccccee------ccCceEEE
Confidence 3 2345688999988764 3579999999987 211 112343332 34678899
Q ss_pred Eec--CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh----c----ccC------CcccHHHHHHHcCCCcHHH
Q 000950 1054 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----E----ELA------SDVDLEGIANMADGYSGSD 1117 (1211)
Q Consensus 1054 aTT--N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k----~----~l~------~dvdL~~LA~~T~GySgaD 1117 (1211)
++| |+.+.|+.++++|+ +++.+.....++-..||..-+.. + .+. ++-.++.|+..++|.....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 887 77789999999999 68888888889988888875541 1 111 2334788999999988777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1118 LKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1118 L~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
|..|-..+.+...|. +......|+.+|+++++..-..-+
T Consensus 334 LN~Lems~~m~~tr~-----------------------g~~~~~~lSidDvke~lq~s~~~Y 372 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRS-----------------------GQSSRVLLSIDDVKEGLQRSHILY 372 (554)
T ss_pred HHHHHHHHHHHHhhc-----------------------CCcccceecHHHHHHHHhhcccee
Confidence 665532222111111 111234688888888877644333
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.4e-12 Score=162.79 Aligned_cols=191 Identities=21% Similarity=0.202 Sum_probs=130.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 976 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------i~I~- 976 (1211)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.- ..|+
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 36899999999999999987752 12345579999999999999999999996531 1110
Q ss_pred ccccccc------cc----cchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC
Q 000950 977 MSSITSK------WF----GEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1042 (1211)
Q Consensus 977 ~seL~s~------~~----G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl 1042 (1211)
|-.+... .+ ...-..++.+...+.. ....|+||||+|.| + ....+.|+..++.
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc-
Confidence 0000000 00 0112335555544432 23469999999998 2 2234444554443
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000950 1043 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1043 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
....+++|++|+.+..|.+.+++|+ .++.|..++.++..++|+..+..+++. ++..+..|+..+.|. .+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2356777878888888999999998 789999999999999999988876544 445578888888875 4566666
Q ss_pred HHHHH
Q 000950 1122 CVTAA 1126 (1211)
Q Consensus 1122 ~~~Aa 1126 (1211)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 65443
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=155.37 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=128.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+.+.|...+.. .+.+..+||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 36899999999999988887652 224467999999999999999999999864
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.++++.- ..-..++.+...+... ...||||||+|.|. . ...+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~----~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------K----EAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------H----HHHHHHH
Confidence 3455554321 1123455555554422 24699999999982 1 1223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. .+..+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..+..|+..+.|-..
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR 213 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR 213 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 44433 2245777777777789999999999 589999999999999999988776543 45567888888876544
Q ss_pred HHHHHHHHHH
Q 000950 1116 SDLKNLCVTA 1125 (1211)
Q Consensus 1116 aDL~~L~~~A 1125 (1211)
.+.++++.+
T Consensus 214 -~aln~Le~l 222 (472)
T PRK14962 214 -DALTMLEQV 222 (472)
T ss_pred -HHHHHHHHH
Confidence 344444443
No 93
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.45 E-value=8.6e-13 Score=155.90 Aligned_cols=185 Identities=23% Similarity=0.341 Sum_probs=116.9
Q ss_pred CCCccc-ccCcHHHHHHHHHHHHcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 905 GVTFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfdd-I~Gle~vk~~L~e~V~~pL~~pelf~k--~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
...+++ |+|++.+++.|...+..++.+-..... ..+..+..++||+||||||||++|+++|..++.+|+.+++..+.
T Consensus 66 ~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 66 KAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 334544 899999999998777544333211100 01222446899999999999999999999999999999998875
Q ss_pred c-ccccch-HHHHHHHHHH----HHhcCCcEEEEccchhhhcCCCCCch-HH-HHHHHHHhhhhhccCCc---------c
Q 000950 982 S-KWFGEG-EKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------T 1044 (1211)
Q Consensus 982 s-~~~G~~-e~~I~~lF~~----A~k~~PsILfIDEID~L~~~r~s~~~-~e-~l~~il~~LL~~ldgl~---------~ 1044 (1211)
. .|+|.. +..+..++.. ..+..++||||||||.+.....++.. .. ....+.+.|+..+++-. .
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 3 577764 3344555443 23456799999999999755322210 00 00113333444443321 1
Q ss_pred cCCccEEEEEecCCCC----------------------------------------------------CCcHHHHhccCc
Q 000950 1045 KDKERVLVLAATNRPF----------------------------------------------------DLDEAVVRRLPR 1072 (1211)
Q Consensus 1045 k~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlrRF~~ 1072 (1211)
......++|.|+|..+ -+.|+|+.|++.
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~ 305 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPV 305 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCe
Confidence 1123455555554411 135677778888
Q ss_pred ccccCCCCHHHHHHHHH
Q 000950 1073 RLMVNLPDAPNREKIIR 1089 (1211)
Q Consensus 1073 ~I~v~lPd~eeR~eILk 1089 (1211)
++.|...+.++..+|+.
T Consensus 306 iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 306 VATLEELDEEALVRILT 322 (412)
T ss_pred eeecCCCCHHHHHHHHH
Confidence 89999999999888887
No 94
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.45 E-value=8.9e-13 Score=153.87 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=127.2
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-ch
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 988 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~~~G-~~ 988 (1211)
|+|++++++.+...+.....+..+.....-..++++|||+||||+|||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999998877654333222111111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 000950 989 EKYVKAVFSLAS-------------------------------------------------------------------- 1000 (1211)
Q Consensus 989 e~~I~~lF~~A~-------------------------------------------------------------------- 1000 (1211)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666666550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 000950 1001 -----------------------------------------------------------------------KIAPSVVFV 1009 (1211)
Q Consensus 1001 -----------------------------------------------------------------------k~~PsILfI 1009 (1211)
..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCccEEEEEec----CCCCCCcHHHHhccCcccccCCC
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
||||.++.+..+.+....-.-+.+.|+..+.|-.- -+..++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986542211111112255566666665321 123679999886 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 000950 1080 DAPNREKII 1088 (1211)
Q Consensus 1080 d~eeR~eIL 1088 (1211)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999988887
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=151.00 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=130.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999887752 2234568999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++.+. ...-..++.+...+... ...|+||||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 01223455665554322 23599999999882 11223344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. .+..+.+|.+|+.++.+.+++++|+ ..+.+..|+.++..++++..++..+.. ++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44433 2245677777777888999999998 689999999999999999998887643 45567788888876 56
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
+++.++++.++.
T Consensus 215 R~al~~l~~~~~ 226 (363)
T PRK14961 215 RDALNLLEHAIN 226 (363)
T ss_pred HHHHHHHHHHHH
Confidence 667777766643
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.4e-12 Score=158.58 Aligned_cols=185 Identities=23% Similarity=0.279 Sum_probs=131.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999987762 2233558999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++... ...-..++.+...+.. ....|+||||+|.| + ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----s-------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----S-------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----C-------HHHHHHHH
Confidence 23333221 0112335555444332 23469999999998 2 12334444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+++|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+..+..+++. ++..+..|+..++|..
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~- 214 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM- 214 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-
Confidence 44443 2356788888888899999999998 789999999999999999998876654 4455778888888754
Q ss_pred HHHHHHHHHHH
Q 000950 1116 SDLKNLCVTAA 1126 (1211)
Q Consensus 1116 aDL~~L~~~Aa 1126 (1211)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.3e-12 Score=156.24 Aligned_cols=187 Identities=17% Similarity=0.176 Sum_probs=134.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 36899999999999999998862 2234568999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++.+. ...-..++.+.+.+... ...|+||||+|.|- . ...+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----~-------~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----G-------HSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----H-------HHHHHHH
Confidence 44454332 11223455555544321 23599999999982 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++.++.++++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 444432 245777777788888988999998 678899999999999999998887654 44557788888876 67
Q ss_pred HHHHHHHHHHHhh
Q 000950 1116 SDLKNLCVTAAHC 1128 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~ 1128 (1211)
+++.+++..+...
T Consensus 215 R~al~lLdq~ia~ 227 (509)
T PRK14958 215 RDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888766543
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.1e-12 Score=157.47 Aligned_cols=185 Identities=23% Similarity=0.246 Sum_probs=132.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++|+|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 36899999999999999988762 234467899999999999999999999865
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.++++.- ..-..++.+...+.. .+..|+||||+|.|- . ...+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----~-------~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----T-------HSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----H-------HHHHHHH
Confidence 2344443321 122345555554432 234699999999882 1 1233344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 44443 2245677777888888889999999 789999999999999999999887654 45557888888876 56
Q ss_pred HHHHHHHHHHH
Q 000950 1116 SDLKNLCVTAA 1126 (1211)
Q Consensus 1116 aDL~~L~~~Aa 1126 (1211)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 99
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-12 Score=155.66 Aligned_cols=172 Identities=22% Similarity=0.363 Sum_probs=125.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------c--
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------T-- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL------~-- 981 (1211)
|=.|++++|+.+.|++.--..+ + ....+-+.|+||||+|||++++.||..++..|++++..-+ .
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5689999999999988631111 1 1122348999999999999999999999999999986443 2
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc-hHHHHHHHHH-----hhhhhccCCcccCCccEEEEE
Q 000950 982 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 982 -s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~-~~e~l~~il~-----~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
..|+|.+...+-+......-..| +++|||||.+. ++..+ ...++..++. .|+...-.++. +-.+|++||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 23777777777777766665554 88999999996 22222 2233333321 23333222222 226799999
Q ss_pred ecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1055 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1055 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
|+|..+.+++.++.|+ .+|.+.=+..+|..+|.+.++-.
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 9999999999999999 78999999999999999988754
No 100
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=8.8e-12 Score=144.60 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=128.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 979 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---------~~fi~I~~se 979 (1211)
+++.|.++.++.|...+...+. + ..+..++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4689999999999887753221 1 1235799999999999999999998762 6788999865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 980 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 980 L~s~----------~~--G--------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
..+. .. | ...+....++..... ..+.||+|||+|.|.... + .++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 012234445554433 346799999999996211 1 133333322
Q ss_pred ccCCcccCCccEEEEEecCCCC---CCcHHHHhccC-cccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHH---H
Q 000950 1039 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIA---N 1108 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k---~~l~~dvdL~~LA---~ 1108 (1211)
+.. ......++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..+..++ .
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111235788899998875 57788888885 67999999999999999998863 1112233333443 3
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhH
Q 000950 1109 MADGYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1109 ~T~GySgaDL~~L~~~Aa~~Air 1131 (1211)
.+.|... ...++|..|+..+..
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHHH
Confidence 4446543 445567777665543
No 101
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=3.1e-12 Score=154.57 Aligned_cols=187 Identities=25% Similarity=0.367 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++++|.+.+++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 3579999999999999999886321 1 234578999999999999999999999999999999877432
Q ss_pred ccchHHHHHHHHHHHHh------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 985 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
...+..+...+.. ..+.||+|||+|.|.+... .... +.++..+.. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~----~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGA----RAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHH----HHHHHHHHc------CCCCEEEeccC
Confidence 1233333333322 2467999999999853211 1111 222222221 22346667888
Q ss_pred CCCCcH-HHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHH
Q 000950 1059 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLC 1122 (1211)
Q Consensus 1059 p~~Ld~-aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~ 1122 (1211)
+..+.. .+++|+ ..|.|+.|+..+...+++.++..+++. ++..+..|+..+.|.....|..|.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888877 565565 789999999999999999999887654 455688899888776555554443
No 102
>PLN03025 replication factor C subunit; Provisional
Probab=99.41 E-value=4.2e-12 Score=145.65 Aligned_cols=181 Identities=24% Similarity=0.249 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~se 979 (1211)
..+|++++|++++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999999886652 1 123699999999999999999999972 2466676655
Q ss_pred cccccccchHHHHHHHHHH-HHh------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 980 ITSKWFGEGEKYVKAVFSL-ASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~-A~k------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
..+ ...++..... +.. ....||+|||+|.|. ...+..++++++ .. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~~lE-------~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRRTME-------IY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHHHHh-------cc----cCCceE
Confidence 322 1123333222 111 235799999999983 223333333332 11 133556
Q ss_pred EEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 000950 1053 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1123 (1211)
Q Consensus 1053 IaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~ 1123 (1211)
|.+||....+.+++++|+ ..+.|..|+.++....++..+.++++. ++..+..|+....|-. +.+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl-R~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM-RQALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 778888888999999998 689999999999999999999887654 5556788888877644 34444444
No 103
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.41 E-value=7.2e-13 Score=164.92 Aligned_cols=127 Identities=17% Similarity=0.332 Sum_probs=97.3
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcCCC--CEEEEeeccCCCCccccCCC
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHP 716 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~---~~~~~i~s~L~~L~g--~VvVIgs~~~~d~~k~k~~~ 716 (1211)
+..+|+.+.. ..|.||||||+|.+..+ +. +..+.+-..++.+.+ .|||||+||+++.
T Consensus 233 ~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~------- 302 (644)
T PRK10733 233 VRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV------- 302 (644)
T ss_pred HHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh-------
Confidence 3445555544 68999999999996431 11 233334344455533 7999999995444
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccc
Q 000950 717 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 794 (1211)
Q Consensus 717 ~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~ 794 (1211)
+|+ |++| ||++++++++||.++|.
T Consensus 303 -----------------------lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 303 -----------------------LDP-------------------------------ALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred -----------------------cCH-------------------------------HHhCCcccceEEEcCCCCHHHHH
Confidence 444 8988 99999999999999999
Q ss_pred hhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 795 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 795 ~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
.|++.|. ...++ .++++..||..|.||+|+||+.+|++|+..|.+.
T Consensus 329 ~Il~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 329 QILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999995 44444 6788999999999999999999999999999764
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=5.4e-12 Score=151.25 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=114.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1019 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1019 (1211)
+.++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 567889998877655433322111122333223 46899999999984322
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhh
Q 000950 1020 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1020 ~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
..++.+..+++.+... ...+||+++..|.. +++.+++||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1233333444443321 23466666666654 6788999995 47999999999999999999887
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1095 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1095 ~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 5543 55568888888776 5566666665554
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.8e-12 Score=151.56 Aligned_cols=185 Identities=20% Similarity=0.257 Sum_probs=134.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+.+.|...+.. .+.+.++||+||+|+|||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887652 2345689999999999999999999998652
Q ss_pred ---------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHH
Q 000950 972 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1032 (1211)
Q Consensus 972 ---------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il 1032 (1211)
++.+++.. ......++.+++.+... ...|+||||+|.|. ....
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12344677777766533 24699999999882 1223
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcC
Q 000950 1033 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1111 (1211)
Q Consensus 1033 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~ 1111 (1211)
+.|+..++. ....+++|++|+.++.+.+++++|+ .++.+..++.++...+++..+++++.. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 334444433 2356777777888888999999998 678999999999999999999987754 4455788898888
Q ss_pred CCcHHHHHHHHHHHH
Q 000950 1112 GYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1112 GySgaDL~~L~~~Aa 1126 (1211)
| +.+++.++++.++
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5666666666654
No 106
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.40 E-value=5.3e-12 Score=149.31 Aligned_cols=169 Identities=20% Similarity=0.292 Sum_probs=113.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1019 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1019 (1211)
+.++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 577899998776554332211101112222222 35799999999985322
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhh
Q 000950 1020 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1020 ~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
..++.+..+++.+.. ....+||+++..|.. +++.+++||. ..+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123333344443321 123456666555543 5688889995 47999999999999999999987
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1095 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1095 ~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
.++. ++..++.||....+ +.++|..++.....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6554 55668888988765 56677766665543
No 107
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.2e-12 Score=153.47 Aligned_cols=172 Identities=23% Similarity=0.324 Sum_probs=127.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~-------- 981 (1211)
|=.|++++|+.+.+++.-.... ..+ ...-++|+||||+|||+|++.||+.++..|++++..-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~~--kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KKL--KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------ccC--CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 4679999999999998642221 111 112489999999999999999999999999999975432
Q ss_pred -cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH-----hhhhhccCCcccCCccEEEEEe
Q 000950 982 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 982 -s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~-----~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
..|+|.....+-+-...|....| +++|||||.|... .......++..++. .|..+.-.+.. +-..|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 23788887778787888877765 8899999999532 22223334444432 23333222222 1267999999
Q ss_pred cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHh
Q 000950 1056 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1056 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
+|..+.++..++.|. .+|.+.-++.+|..+|.+.++=
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 7999999999999999998773
No 108
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.7e-11 Score=143.85 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=128.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc-
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS- 982 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s- 982 (1211)
+.+.|.++..+.|...+...+. ...+.+++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 4688899998888887753221 1123579999999999999999999877 57899999865321
Q ss_pred ---------cccc--------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc
Q 000950 983 ---------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1044 (1211)
Q Consensus 983 ---------~~~G--------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~ 1044 (1211)
...+ ..+..+..++..... ..+.||+|||+|.+..... . .++..++..+....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~----~~l~~l~~~~~~~~- 170 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----N----DVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----c----hHHHHHHHhhhccC-
Confidence 1111 112333444444333 3457999999999862111 1 23344444333321
Q ss_pred cCCccEEEEEecCCC---CCCcHHHHhccC-cccccCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCCc--H
Q 000950 1045 KDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS--G 1115 (1211)
Q Consensus 1045 k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k~---~l~~dvdL~~LA~~T~GyS--g 1115 (1211)
..++.+|+++|.. +.+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.++..+.+.+ .
T Consensus 171 --~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 --GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred --CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2368888888765 357788888774 578999999999999999987642 1224445677777774322 2
Q ss_pred HHHHHHHHHHHhhhh
Q 000950 1116 SDLKNLCVTAAHCPI 1130 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~Ai 1130 (1211)
+.+..+|..|+..+.
T Consensus 249 r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 249 RVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344466666655443
No 109
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.9e-12 Score=151.16 Aligned_cols=186 Identities=21% Similarity=0.237 Sum_probs=136.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|+|++|++.+.+.|...+.. .+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 36899999999999999887652 334568999999999999999999987632
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.+++++- ..-..++.+.+.+... ...|++|||+|.|- ....+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455555421 1234566666666433 24699999999882 12334445
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2355777778888888999999999 679999999999999999999887654 55567888888876 56
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
+++.+++..+..
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 677777666553
No 110
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.39 E-value=4.3e-12 Score=148.29 Aligned_cols=179 Identities=22% Similarity=0.364 Sum_probs=127.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 987 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~~~G-~ 987 (1211)
.|+|++++++.+...+.....+..+........++.++||+||||+|||++|+++|+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998887643333222111111123578999999999999999999999999999999987774 6777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000950 988 GEKYVKAVFSLAS------------------------------------------------------------------- 1000 (1211)
Q Consensus 988 ~e~~I~~lF~~A~------------------------------------------------------------------- 1000 (1211)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666666666661
Q ss_pred ---------------------------------------------------------------------h--cCCcEEEE
Q 000950 1001 ---------------------------------------------------------------------K--IAPSVVFV 1009 (1211)
Q Consensus 1001 ---------------------------------------------------------------------k--~~PsILfI 1009 (1211)
. ...+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc------CCccEEEEEec----CCCCCCcHHHHhccCcccccCCC
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
||||.++....+.+....-.-+.+.|+..+.|-.-+ +..+|++||+. ..|.+|-|+|+.||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999865432111111122555666666663211 23679999886 45778889999999999999999
Q ss_pred CHHHHHHHH
Q 000950 1080 DAPNREKII 1088 (1211)
Q Consensus 1080 d~eeR~eIL 1088 (1211)
+.++...||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999988887
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=8.1e-12 Score=153.56 Aligned_cols=186 Identities=23% Similarity=0.279 Sum_probs=134.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999998762 2345679999999999999999999988543
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++.+. ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222211 1223456666665432 234699999999871 11233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+.+|++|+.+..+...+++|+ ..+.|..++.++-..+|+.++.++++. ++..+..|+..+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 44443 2255778888888889999999998 678899999999999999999987764 44557888888865 56
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
+++.+++..+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 677777766554
No 112
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.1e-11 Score=152.53 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=132.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 36899999999999999998763 2234568999999999999999999998641
Q ss_pred ----------------EEEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHH
Q 000950 972 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKM 1031 (1211)
Q Consensus 972 ----------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~i 1031 (1211)
++.++... ...-..++.+.+.+.... -.|++|||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22232211 112234566665543322 3599999999982 112
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000950 1032 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1110 (1211)
Q Consensus 1032 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T 1110 (1211)
.+.|+..++. ....+.+|.+|+.+..+...+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3444544443 2356777777778888888999998 789999999999999999998887665 445578888888
Q ss_pred CCCcHHHHHHHHHHHHh
Q 000950 1111 DGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1111 ~GySgaDL~~L~~~Aa~ 1127 (1211)
.| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 87 56677777665543
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.37 E-value=1.5e-12 Score=152.01 Aligned_cols=128 Identities=23% Similarity=0.361 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSH 715 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~---~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~ 715 (1211)
.+..+|+.+.. ..|.||||||+|.+... .. .....+...++.+ .++|+||+++|+++.
T Consensus 203 ~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~------ 273 (364)
T TIGR01242 203 LVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI------ 273 (364)
T ss_pred HHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh------
Confidence 45566666654 68999999999996542 11 1222233334444 358999999995443
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhcc
Q 000950 716 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 793 (1211)
Q Consensus 716 ~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR 793 (1211)
+++ +++| ||++.+++++|+...|
T Consensus 274 ------------------------ld~-------------------------------al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 274 ------------------------LDP-------------------------------ALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred ------------------------CCh-------------------------------hhcCcccCceEEEeCCcCHHHH
Confidence 332 7776 8999999999999999
Q ss_pred chhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 794 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 794 ~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
.+|+++|+. ...+ .+.+++.|+..|.||+|+||+.+|+.|..+|+.+
T Consensus 299 ~~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 299 LEILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999964 2233 4578999999999999999999999999999875
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.1e-11 Score=157.07 Aligned_cols=185 Identities=19% Similarity=0.177 Sum_probs=127.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999998762 2233568999999999999999999999642
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000950 972 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1034 (1211)
Q Consensus 972 -------------fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~ 1034 (1211)
|+.++.... ..-..++.+.+.+ ......|+||||+|.|- . ...+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----~-------~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----P-------QGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----H-------HHHHH
Confidence 222322110 0122334433322 22344699999999982 1 22334
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000950 1035 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1035 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~Gy 1113 (1211)
|+..++.. ...+++|++|+.++.|.+.|++|+ .++.|..++.++..++|+.++.++++. ++..+..|+....|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 44444432 256778878888888999999998 789999999999999999999887764 34456777777766
Q ss_pred cHHHHHHHHHHHH
Q 000950 1114 SGSDLKNLCVTAA 1126 (1211)
Q Consensus 1114 SgaDL~~L~~~Aa 1126 (1211)
+.+++.++++..+
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555443
No 115
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=9.9e-12 Score=146.32 Aligned_cols=187 Identities=16% Similarity=0.231 Sum_probs=125.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------- 972 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------------- 972 (1211)
.|++|+|++.+++.|+..+.........+ + .+.+..+||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999987533221111 1 12356799999999999999999999875431
Q ss_pred ---------EEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000950 973 ---------INISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1039 (1211)
Q Consensus 973 ---------i~I~~seL~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l 1039 (1211)
..+... +. ...-..++.++..+...+ ..|+||||+|.|. . ...+.|+..+
T Consensus 79 ~~~~~hpD~~~i~~~---~~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----~-------~aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPE---GL--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----E-------RAANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----H-------HHHHHHHHHh
Confidence 111111 01 112335778887776532 3599999999982 1 1223444444
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH
Q 000950 1040 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1119 (1211)
Q Consensus 1040 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~ 1119 (1211)
+.. ..++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. ...+ +......++..+.|..+..+.
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 432 233455555555899999999999 6899999999987777663 2233 344567889999998887766
Q ss_pred HHHH
Q 000950 1120 NLCV 1123 (1211)
Q Consensus 1120 ~L~~ 1123 (1211)
.+..
T Consensus 213 l~~~ 216 (394)
T PRK07940 213 LATD 216 (394)
T ss_pred HhcC
Confidence 5543
No 116
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=1.6e-11 Score=153.71 Aligned_cols=182 Identities=21% Similarity=0.376 Sum_probs=124.1
Q ss_pred CCCcccccCcHHHHH---HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~---~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..+|++++|++.+.. .|++.+.. . ...++||+||||||||++|+++++..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~----------~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA----------D----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 368999999999885 45554431 1 22479999999999999999999999999999887531
Q ss_pred cccccchHHHHHHHHHHHH-----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 982 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
..+.++.++..+. .....+|||||||.| +...+.. |+..+. ...+++|++|
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----n~~qQda-------LL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----NKAQQDA-------LLPWVE------NGTITLIGAT 144 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----CHHHHHH-------HHHHhc------CceEEEEEec
Confidence 1112333333331 123579999999988 2122222 222222 1456777665
Q ss_pred --CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh-------cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1057 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1057 --N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k-------~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
|....+++++++|+ ..+.++.++.+++..+++.++.. ..+. ++..++.|+....| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33467889999997 67999999999999999998873 2222 34457888888755 5667777777765
Q ss_pred h
Q 000950 1127 H 1127 (1211)
Q Consensus 1127 ~ 1127 (1211)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 3
No 117
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=3.4e-11 Score=130.32 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=119.6
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 905 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~--Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
..+|+++. +.....+.+++.+. ......++|+||+|||||++|+++++++ +.+++.++|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 35677754 45566777776543 1234679999999999999999999887 57889999887
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 000950 980 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1059 (1211)
+.... ..++.... ...+|+|||+|.+-... ..++.+..+++... . ....+|++++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCCeEEEECCCCh
Confidence 65321 22332222 24699999999882110 11333333333221 1 1223444444444
Q ss_pred CCCc---HHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1060 FDLD---EAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1060 ~~Ld---~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
..+. +.+.+|+. ..+.++.|+.+++..+++.++.+..+. ++..+..|+.. -+.+.+++.++++.+..
T Consensus 135 ~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 135 AQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 3332 77888873 678999999999999999887665443 44557777775 44577888888777553
No 118
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.35 E-value=2.1e-11 Score=139.62 Aligned_cols=189 Identities=22% Similarity=0.271 Sum_probs=123.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~se 979 (1211)
..+|++++|.+.+++.|..++.. . ...++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 35799999999999999887752 1 123799999999999999999999883 3578888876
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000950 980 ITSKW-------------FGE-------GEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1034 (1211)
Q Consensus 980 L~s~~-------------~G~-------~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~ 1034 (1211)
+.... .+. ....++.+....... .+.+|+|||+|.+- ...+..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~~~L~~---- 147 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQQALRR---- 147 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHHHHHHH----
Confidence 53221 010 012233333333222 24699999999872 111222222
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000950 1035 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1035 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~Gy 1113 (1211)
.++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+.++. ++..++.|+..+.|
T Consensus 148 ---~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 148 ---IMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred ---HHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 222211 22445556656667778888887 678999999999999999998876654 55567888888754
Q ss_pred cHHHHHHHHHHH
Q 000950 1114 SGSDLKNLCVTA 1125 (1211)
Q Consensus 1114 SgaDL~~L~~~A 1125 (1211)
+.+++.+.++.+
T Consensus 219 dlr~l~~~l~~~ 230 (337)
T PRK12402 219 DLRKAILTLQTA 230 (337)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 119
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.35 E-value=2.5e-11 Score=140.13 Aligned_cols=186 Identities=26% Similarity=0.338 Sum_probs=131.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++++.+.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999987752 2234679999999999999999999987432
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++... ......++.++..+...+ ..||+|||+|.+- ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 112234666776665432 3599999999882 11234444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. ...+++|.+|+.++.+.+++++|+ ..+.++.|+.++..++++.++++.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 444432 245777777888888889999998 578999999999999999999887653 44556778888766 55
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
+.+.+.++.+..
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 566666655543
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.35 E-value=1.1e-11 Score=137.92 Aligned_cols=183 Identities=24% Similarity=0.345 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEecc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 978 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~------~fi~I~~s 978 (1211)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999998752 12248999999999999999999999955 23444555
Q ss_pred ccccccccchHHHHHHHHHHHHh---------cCC-cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCc
Q 000950 979 SITSKWFGEGEKYVKAVFSLASK---------IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1048 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k---------~~P-sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~ 1048 (1211)
+..+..++. ..++ -|....- .+| .||+|||.|.| ....+.+++++++.+ ..
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----tsdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----TSDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----hHHHHHHHHHHHhcc-----------cc
Confidence 544433221 1111 1222211 122 69999999999 334555666665543 25
Q ss_pred cEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000950 1049 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1049 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
.+++|..||..+.|...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|--.+.+..|
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6899999999999999999998 467788888888888889998888876 44557888998888655554444
No 121
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.9e-11 Score=148.60 Aligned_cols=185 Identities=23% Similarity=0.272 Sum_probs=128.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999987752 223456999999999999999999998854
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.++... ..| -..++.+...+.. ....|+||||+|.| +. ...+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----s~-------~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-----SK-------QSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----cH-------HHHHHHH
Confidence 233333211 111 1234555544432 23469999999988 21 2233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+.+|++|+.+..+.+.+++|+ ..+.|..++.++-...++..+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 444432 245667777777888888899998 789999999999999999988887654 44557778888865 45
Q ss_pred HHHHHHHHHHH
Q 000950 1116 SDLKNLCVTAA 1126 (1211)
Q Consensus 1116 aDL~~L~~~Aa 1126 (1211)
+++.++++.++
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 55556655544
No 122
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-12 Score=142.23 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=128.4
Q ss_pred eeeecCCCCcCCCCCC-CCCCCCC--cccccc-cccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc--
Q 000950 605 GVRFDRSIPEGNNLGG-FCEDDHG--FFCTAS-SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-- 678 (1211)
Q Consensus 605 gV~fd~~~~~~~~l~~-~ce~~~~--~~~~~~-~~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~-- 678 (1211)
||..-.|+.+|.+|+. .|-.... |..-+. -+ -.++-.+.-.++...|..+.+ +.|.||||+++|.+=.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL---VQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKR 280 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL---VQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKR 280 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH---HhhhhcchHHHHHHHHHHhhc---cCCeEEEEechhhhcccc
Confidence 4555568899999982 3322111 222221 10 023444555678888999888 9999999999998422
Q ss_pred ------cChhhHHHHHHHHhcCCC-----CEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 000950 679 ------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 747 (1211)
Q Consensus 679 ------~~~~~~~~i~s~L~~L~g-----~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~ 747 (1211)
|..+.-......|..|.| .|-||.||||.|- +||
T Consensus 281 fDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi----------------------LDP------------- 325 (424)
T KOG0652|consen 281 FDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI----------------------LDP------------- 325 (424)
T ss_pred ccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc----------------------cCH-------------
Confidence 455665556666666655 8999999998775 555
Q ss_pred ccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchhhHHHHH-hhhCCCCcccchhhhcccCCCC
Q 000950 748 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 824 (1211)
Q Consensus 748 ~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~s 824 (1211)
|||| |++|.+|||+|+..+|..|++||.+ |.- -+|++.++||..|..|.
T Consensus 326 --------------------------ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 326 --------------------------ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDDFN 377 (424)
T ss_pred --------------------------HHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccccC
Confidence 9999 9999999999999999999999987 432 27899999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhc
Q 000950 825 TEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 825 gadI~~Lv~~A~s~Al~r~ 843 (1211)
||...++|-+|--.|++|-
T Consensus 378 GAQcKAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMIALRRG 396 (424)
T ss_pred chhheeeehhhhHHHHhcc
Confidence 9999999999999998763
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.35 E-value=2.2e-11 Score=138.78 Aligned_cols=157 Identities=21% Similarity=0.262 Sum_probs=108.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++++|.+.+++.+...+.. .+.++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999987752 123355777999999999999999999999999999876 21
Q ss_pred ccchHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 985 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
.......+........ ...+.||||||+|.+. ....+. .+..++ +.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~~----~L~~~l---e~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----LADAQR----HLRSFM---EAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----CHHHHH----HHHHHH---Hhc----CCCceEEEEcCChhhch
Confidence 1111111222111111 1246899999999872 111122 222222 221 24567888999999999
Q ss_pred HHHHhccCcccccCCCCHHHHHHHHHHHHh
Q 000950 1064 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1064 ~aLlrRF~~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 5789999999999988776544
No 124
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2e-12 Score=156.52 Aligned_cols=130 Identities=22% Similarity=0.398 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc---------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG---------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~---------~---~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k~ 714 (1211)
-++.||+=+.. +.|.|||||++|. +++ | +|..+-+...++.+. .+||||+||||+|.
T Consensus 230 RVRdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV----- 300 (596)
T COG0465 230 RVRDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV----- 300 (596)
T ss_pred HHHHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc-----
Confidence 37888888877 8999999999999 653 2 245555555666665 38999999997665
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 792 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~g 792 (1211)
+|+ |||| ||+||+-.++||+++
T Consensus 301 -----------------lD~---------------------------------------ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 301 -----------------LDP---------------------------------------ALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred -----------------chH---------------------------------------hhcCCCCcceeeecCCcchhh
Confidence 443 9999 999999999999999
Q ss_pred cchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 000950 793 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 845 (1211)
Q Consensus 793 R~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 845 (1211)
|.+|+++|. +.-++ +++++..+|..|.||+||+++.++.+|+.+|.++...
T Consensus 325 Re~IlkvH~--~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 325 REQILKVHA--KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred HHHHHHHHh--hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 999999995 44444 8999999999999999999999999999999986543
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.5e-11 Score=150.00 Aligned_cols=185 Identities=22% Similarity=0.266 Sum_probs=131.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999988762 2344568999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++.+. ...-..++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11233566666665432 23599999999882 12234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-.+.+...+.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 256777777777888888899998 789999999999999999988877654 34456778888776 45
Q ss_pred HHHHHHHHHHH
Q 000950 1116 SDLKNLCVTAA 1126 (1211)
Q Consensus 1116 aDL~~L~~~Aa 1126 (1211)
+++.+++..|.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 56666666544
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=1e-11 Score=146.34 Aligned_cols=185 Identities=22% Similarity=0.339 Sum_probs=116.4
Q ss_pred CCccc-ccCcHHHHHHHHHHHHcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000950 906 VTFDD-IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 980 (1211)
Q Consensus 906 ~sfdd-I~Gle~vk~~L~e~V~~pL~~pelf-~k---~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL 980 (1211)
..+++ ++|++++++.+...+.....+-... .. .++.....++||+||||+|||++|+++|..++.+|..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34444 7999999999988775333221110 00 0111223579999999999999999999999999999998886
Q ss_pred cc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchH-HH-HHHHHHhhhhhccCCc---------
Q 000950 981 TS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLR--------- 1043 (1211)
Q Consensus 981 ~s-~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~-e~-l~~il~~LL~~ldgl~--------- 1043 (1211)
.. .|+|.. +..+..++..+ ....++||||||||.+..++.++... .. -..+.+.|+..++|..
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 477764 34444444322 34467899999999997643322100 00 0123333444443321
Q ss_pred ccCCccEEEEEecCCCC--------------------------------------------------CCcHHHHhccCcc
Q 000950 1044 TKDKERVLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRR 1073 (1211)
Q Consensus 1044 ~k~~~~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRF~~~ 1073 (1211)
..+..+.++|.|+|-.+ -+.|+|+.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 11234567777776510 0336666788888
Q ss_pred cccCCCCHHHHHHHHHH
Q 000950 1074 LMVNLPDAPNREKIIRV 1090 (1211)
Q Consensus 1074 I~v~lPd~eeR~eILk~ 1090 (1211)
+.|.+.+.++..+|+..
T Consensus 313 v~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 313 ATLEKLDEEALIAILTK 329 (413)
T ss_pred eecCCCCHHHHHHHHHH
Confidence 88888888888888765
No 127
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.34 E-value=1.2e-11 Score=156.36 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=116.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-------
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 982 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s------- 982 (1211)
+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999987642221 0 112346999999999999999999999999999998765321
Q ss_pred --ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHh-----hhhhccCCcccCCccEEEEEe
Q 000950 983 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 983 --~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~-----LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
.|.|.....+.+.+..+.... .||||||||.+..... .....++..++.. |....-.+. -+-.++++|+|
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~T 471 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVAT 471 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEc
Confidence 244544445555555544333 4899999999853221 1122333333321 100000111 12267999999
Q ss_pred cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHh
Q 000950 1056 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1056 TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
+|.. .+++++++|| .+|.+..++.++..+|.+.++-
T Consensus 472 aN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 472 SNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9876 5999999999 5899999999999999998884
No 128
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.6e-12 Score=136.80 Aligned_cols=216 Identities=26% Similarity=0.382 Sum_probs=160.8
Q ss_pred CCCccccccccccccchhhHHHHHHhhhhhcccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEE
Q 000950 405 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 483 (1211)
Q Consensus 405 ~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LL 483 (1211)
+-++-+||+...--. +-.|+-..+|+-..|-|.++ |-. .+. .-+.+||.|||| ....|||||.|||-.|.++
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~l--y~qigid-pprgvllygppg--~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADL--YKQIGID-PPRGVLLYGPPG--TGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHH--HHHhCCC-CCcceEEeCCCC--CcHHHHHHHHhhccchhee
Confidence 345667788777776 88899999999999999988 433 333 347899999999 6899999999999888765
Q ss_pred EEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCC
Q 000950 484 IVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGD 563 (1211)
Q Consensus 484 ilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 563 (1211)
=+-. +|+
T Consensus 219 rvvg----------sef--------------------------------------------------------------- 225 (408)
T KOG0727|consen 219 RVVG----------SEF--------------------------------------------------------------- 225 (408)
T ss_pred eecc----------HHH---------------------------------------------------------------
Confidence 4321 111
Q ss_pred ee-eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCC
Q 000950 564 RV-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 642 (1211)
Q Consensus 564 rv-~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~ 642 (1211)
| ||.|- |
T Consensus 226 -vqkylge------------g----------------------------------------------------------- 233 (408)
T KOG0727|consen 226 -VQKYLGE------------G----------------------------------------------------------- 233 (408)
T ss_pred -HHHHhcc------------C-----------------------------------------------------------
Confidence 1 33331 0
Q ss_pred chhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc-------c-ChhhHHHHHHHHhcCCC-----CEEEEeeccCCCC
Q 000950 643 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-------G-NNDAYGALKSKLENLPS-----NVVVIGSHTQLDS 709 (1211)
Q Consensus 643 ~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~-------~-~~~~~~~i~s~L~~L~g-----~VvVIgs~~~~d~ 709 (1211)
-+.+..+|-++.+ ..|.||||++||.+-. | ..+.-..+...|....| ||-||.|||+.|.
T Consensus 234 ----prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 234 ----PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred ----cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 1256677888877 8999999999999543 2 23444445556666655 9999999998776
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcc
Q 000950 710 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 787 (1211)
Q Consensus 710 ~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~L 787 (1211)
+|| |||| |++|.+||+|
T Consensus 307 ----------------------ldp---------------------------------------allrpgrldrkiefpl 325 (408)
T KOG0727|consen 307 ----------------------LDP---------------------------------------ALLRPGRLDRKIEFPL 325 (408)
T ss_pred ----------------------cCH---------------------------------------hhcCCccccccccCCC
Confidence 555 9999 9999999999
Q ss_pred hhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 788 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 788 pd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
||..-++=++.--| ..-.+ +++||+.+.......+||+|.++|.+|-.+|.+.
T Consensus 326 pdrrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 326 PDRRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred CchhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 99765554444333 22234 7899999999999999999999999999998763
No 129
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=2.5e-11 Score=148.86 Aligned_cols=184 Identities=25% Similarity=0.328 Sum_probs=131.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999998762 234466999999999999999999998743
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
+++.++++. ...-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 344444321 12234566666665532 24699999999882 12334455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++....++..+.+.++. ++..+..|+..+.| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 544432 355777777778899999999998 578899999999999999999887654 44557778888877 44
Q ss_pred HHHHHHHHHH
Q 000950 1116 SDLKNLCVTA 1125 (1211)
Q Consensus 1116 aDL~~L~~~A 1125 (1211)
++..+++..+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 130
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.33 E-value=8.8e-11 Score=127.95 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=113.9
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 905 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~--Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
..+|+++. +.+.+...+.++.. + ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-----------~--~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-----------G--PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-----------c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788854 34555555555433 1 1233579999999999999999999876 67888888866
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 000950 980 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1058 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~-VlVIaTTN~ 1058 (1211)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999987 2223333434433321 1123 344444433
Q ss_pred C--CCCcHHHHhcc--CcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1059 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1059 p--~~Ld~aLlrRF--~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
+ ..+.+.+++|| ...+.+++|+.+++..+++.+.....+. ++..++.|+....| +.+++..+++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 23567888887 4688999999989999998887765543 44456777775444 56677766665
No 131
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.5e-11 Score=146.93 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=129.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 36899999999999999998763 2233557999999999999999999988531
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 972 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 972 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 34444321 1122345555444432 235799999999771 122334444
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000950 1038 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1116 (1211)
Q Consensus 1038 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySga 1116 (1211)
.++. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+.+.++. ++..+..|+..+.|. .+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 4433 2245777778888899999999998 579999999999999999999887654 445577888888774 44
Q ss_pred HHHHHHHHH
Q 000950 1117 DLKNLCVTA 1125 (1211)
Q Consensus 1117 DL~~L~~~A 1125 (1211)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 555555544
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=3.7e-11 Score=143.68 Aligned_cols=168 Identities=15% Similarity=0.253 Sum_probs=112.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
++++||||+|+|||+|++++++++ +..++++++..+...+...........|....+ ...+|+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999876 688888887765543322111111123443333 45799999999884322
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcc
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1096 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~ 1096 (1211)
..++.+..+++.+... ...+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 2344455555554421 2345555555554 46789999995 6888999999999999999988765
Q ss_pred cC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1097 LA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1097 l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
+. ++..++.||....+ +.++|...+...+
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 43 44556778877664 4556665555543
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.5e-11 Score=148.57 Aligned_cols=181 Identities=21% Similarity=0.260 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999998762 1223579999999999999999999998652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++...- ..-..++.+.+.+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333433210 11123333332222 2234699999999982 12234455
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l-~~dvdL~~LA~~T~GySg 1115 (1211)
..++.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++...+|+..+.++.+ .++..+..|+..+.|...
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 444431 246788888888888988999998 57899999999999999998887765 355567888888887555
Q ss_pred HHHHHH
Q 000950 1116 SDLKNL 1121 (1211)
Q Consensus 1116 aDL~~L 1121 (1211)
..+..|
T Consensus 216 ~Al~lL 221 (624)
T PRK14959 216 DSMSLL 221 (624)
T ss_pred HHHHHH
Confidence 444333
No 134
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=1e-10 Score=128.82 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=114.5
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 905 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~-G-le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
..+|++++ | ...+...+...... .....++|+||+|+|||+|++++++++ +..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788854 4 44455555554321 122479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc-EEEEEecCC
Q 000950 980 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1058 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~-VlVIaTTN~ 1058 (1211)
... ....+++.... ..+|+||||+.+.+. +..++.+..+++.++. .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222222 268999999988321 1223344444444431 123 355555566
Q ss_pred CCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1059 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1059 p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
|.. +.+.+++|+. .++.+..|+.++|.++++......++. ++..++.|+....| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5799999985 689999999999999999866665443 55567888888876 44555555554
No 135
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.31 E-value=4.1e-11 Score=131.41 Aligned_cols=189 Identities=25% Similarity=0.350 Sum_probs=134.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
.+.+++++|++.+++.|.+.... |.+ ..|.+++||+|++|||||++++++.+++ |..+|.+.-.+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887654 333 3477899999999999999999999877 7778888765543
Q ss_pred cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+..++...+.. ..-|||+|++- |. ..+.+ ...|...++|-....+.+|+|.+|+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe----~~d~~-----yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--FE----EGDTE-----YKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--CC----CCcHH-----HHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 355566665533 35799999874 21 11111 13445556666656678999999999754
Q ss_pred CCcH-----------------------HHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCc-ccHH----HHHHHcCC
Q 000950 1061 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLE----GIANMADG 1112 (1211)
Q Consensus 1061 ~Ld~-----------------------aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~d-vdL~----~LA~~T~G 1112 (1211)
.+.+ ++..||+..+.|..|+.++-.+|++.++.+.++.-+ ..+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3221 344499999999999999999999999988766533 2332 23445557
Q ss_pred CcHHHHHHHHH
Q 000950 1113 YSGSDLKNLCV 1123 (1211)
Q Consensus 1113 ySgaDL~~L~~ 1123 (1211)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78865555544
No 136
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.9e-11 Score=147.04 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=126.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 36899999999999999998762 2234558999999999999999999988642
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000950 972 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1034 (1211)
Q Consensus 972 -------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~ 1034 (1211)
++.++++.. ..-..++.+.+.+.. ....|++|||+|.|- . ...+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----~-------~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----T-------AGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----H-------HHHHH
Confidence 222322211 112334444444322 234699999999882 1 23344
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000950 1035 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1035 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~Gy 1113 (1211)
|+..++. ....+++|++|+.++.+.+++++|+ .++.|..++.++..++++.++.++++. ++..+..++....|
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5555544 2356888888888899999999997 789999999999999999998887653 44456667776665
Q ss_pred cHHHHHHHHHH
Q 000950 1114 SGSDLKNLCVT 1124 (1211)
Q Consensus 1114 SgaDL~~L~~~ 1124 (1211)
+.+++.++++.
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=3.2e-11 Score=144.17 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=111.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1019 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1019 (1211)
++++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|....+..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888888776554432211111112333334468899999999885432
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhh
Q 000950 1020 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1020 ~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
. .++.+..+++.+.. ....+||++...|.. +.+.+++||. ..+.+..|+.+.|..|++..+..
T Consensus 211 ~---~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 G---VQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H---HHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 22333334444331 133466655566654 4567888884 47789999999999999999876
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1095 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1095 ~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
..+. ++..+..||....| +.++|..++...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 5443 45567888888775 556666665544
No 138
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.2e-12 Score=142.05 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=107.6
Q ss_pred CchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhc---------cChhhHHHHHHHHhcC-----CCCEEEEeeccCC
Q 000950 642 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENL-----PSNVVVIGSHTQL 707 (1211)
Q Consensus 642 ~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~---------~~~~~~~~i~s~L~~L-----~g~VvVIgs~~~~ 707 (1211)
+....-+.+.+||+++.+ +...||||++||. ++ +.++.-......+.+| +||+-|+-|||++
T Consensus 251 yvgegarmvrelf~mart---kkaciiffdeida-iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMART---KKACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HhhhhHHHHHHHHHHhcc---cceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 344556779999999998 8999999999998 44 3455544444444444 5799999999965
Q ss_pred CCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhh
Q 000950 708 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 785 (1211)
Q Consensus 708 d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~ 785 (1211)
|- +|| ||+| |++|.+||
T Consensus 327 dt------------------------------ldp-------------------------------allrpgrldrkvef 345 (435)
T KOG0729|consen 327 DT------------------------------LDP-------------------------------ALLRPGRLDRKVEF 345 (435)
T ss_pred CC------------------------------cCH-------------------------------hhcCCcccccceec
Confidence 55 444 9999 99999999
Q ss_pred cchhhhccchhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 786 DVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 786 ~Lpd~~gR~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
.|||++||.+|++||++ |.-. .+.-.+-||.++.+-+||+|+.+|++|--+|+.-
T Consensus 346 ~lpdlegrt~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 346 GLPDLEGRTHIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred cCCcccccceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 99999999999999987 4321 3445677999999999999999999999999863
No 139
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.6e-11 Score=144.94 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887752 233467999999999999999999998843
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.++++. ...-..++.+...+... ...|++|||+|.|- .. ..+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~~-------A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----TS-------AWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----HH-------HHHHHH
Confidence 223333221 01223456666555433 23599999999882 11 223444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++....++..+.+.+.. ++..+..++..+.|. .
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-l 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-L 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-H
Confidence 44443 2245777778888899999999998 589999999999999999988876642 455577888888774 4
Q ss_pred HHHHHHHHHH
Q 000950 1116 SDLKNLCVTA 1125 (1211)
Q Consensus 1116 aDL~~L~~~A 1125 (1211)
+++.++++.+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 4544555543
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.29 E-value=8.1e-11 Score=145.24 Aligned_cols=181 Identities=19% Similarity=0.247 Sum_probs=120.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 978 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~~s 978 (1211)
+.|.+.++.+++|..++...+.. ..|...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46889999999999888643321 1232335799999999999999998766 2668999995
Q ss_pred ccccc----------ccc-------chHHHHHHHHHHHHh--cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000950 979 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1039 (1211)
Q Consensus 979 eL~s~----------~~G-------~~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l 1039 (1211)
.+... +.+ .....+..+|..... ....||+|||||.|... .+..+.. |+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYn----LFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFT----LFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHH----HHHH-
Confidence 43211 101 123456666765532 23469999999999532 2233322 2221
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhccCc-ccccCCCCHHHHHHHHHHHHhhc-ccCCcccHHHHHHHcC
Q 000950 1040 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMAD 1111 (1211)
Q Consensus 1040 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~lL~k~-~l~~dvdL~~LA~~T~ 1111 (1211)
.. ....++.|||++|. +..|++.+++||.. ++.|++++.+++.+||+..+... .+.++..+..+|....
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 12357899999986 45677888888864 48899999999999999988753 2334555677776444
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=7.5e-11 Score=143.97 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=113.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1019 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1019 (1211)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 578899998887765543322222223443333 46899999999885332
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC---CCCcHHHHhcc--CcccccCCCCHHHHHHHHHHHHhh
Q 000950 1020 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1020 ~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF--~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
..++.+..+++.+... .+-+||++...+ ..+++.+++|| ..++.|..|+.+.|.+||+..+..
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 2234455555555421 223444443333 35778999998 456789999999999999999887
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1095 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1095 ~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
..+. ++..++.|+....+ +.++|..++...
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 6655 45557788887764 466666665544
No 142
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=2.7e-10 Score=125.40 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=96.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
..++|+||+|||||+|++++++++ +..++++++.++.. .+...+.... ...+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 66667776544322 2233343332 34699999999884322
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC---cHHHHhcc--CcccccCCCCHHHHHHHHHHHHhhcc
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1096 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L---d~aLlrRF--~~~I~v~lPd~eeR~eILk~lL~k~~ 1096 (1211)
..+..+..+++.+.. +..-+|+++...|..+ ++.+++|| ...+.++.|+.++|.++++.......
T Consensus 110 -~~~~~lf~l~n~~~~---------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 110 -EDEVALFDFHNRARA---------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred -HHHHHHHHHHHHHHH---------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 122333333333321 1222444444456544 68999996 56789999999999999998776554
Q ss_pred cC-CcccHHHHHHHcCCC
Q 000950 1097 LA-SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1097 l~-~dvdL~~LA~~T~Gy 1113 (1211)
+. ++..+..|+..+.|.
T Consensus 180 l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 180 LALDEAAIDWLLTHGERE 197 (233)
T ss_pred CCCCHHHHHHHHHhCCCC
Confidence 43 555678888887753
No 143
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.28 E-value=1.4e-11 Score=143.74 Aligned_cols=272 Identities=20% Similarity=0.240 Sum_probs=163.7
Q ss_pred CCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHH-HHHhhhhhhhhhhhhhhhhcchhHHHHhhhcCCCC
Q 000950 822 TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN-ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIP 900 (1211)
Q Consensus 822 g~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~-df~~a~~eik~~~~slk~iv~~~e~ek~ll~~vIp 900 (1211)
.+++.++...+ ..+.++....+...+.....++...++.+-.. .|. +.+... ..+ ......
T Consensus 8 ~~ta~~~a~~l-~~r~~vs~~l~~l~~~~~~~~~~~~pv~~~~~~a~~--~~~~~~----------~~~-----~~~~~~ 69 (403)
T COG1221 8 AFTAEAIAEQL-MLRANVSHELNGLGREGDLAKINGRPVIFLPSEAFS--MSELTE----------LQA-----LLPQAR 69 (403)
T ss_pred hhhHHHHHHHH-HHHHHhHHHHHhhhhhhhHHHhcCCCchhHHHHHhh--hhhhhh----------hhh-----cccchh
Confidence 45666666655 56666655555544445556677777766442 222 000000 000 000000
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEe
Q 000950 901 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINIS 976 (1211)
Q Consensus 901 ~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e----lg~~fi~I~ 976 (1211)
+.-....+.+++|.....+.+.+.+.. +. .-..+|||+|++||||+.+|++|... .+.|||.+|
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~N 137 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFN 137 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEE
Confidence 111134678899998888888887752 11 11245999999999999999999643 367999999
Q ss_pred ccccccc-----cccch-------HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc
Q 000950 977 MSSITSK-----WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1044 (1211)
Q Consensus 977 ~seL~s~-----~~G~~-------e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~ 1044 (1211)
|+.+... .||.. ...-..+|+.|.. ++||+|||+.| ++..++.+.++++.....--|-..
T Consensus 138 Ca~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 138 CAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHhCcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCC
Confidence 9875432 33321 2223345555554 89999999998 677888888888887666444444
Q ss_pred cCCccEEEEEecCC--CCCCcH--HHHhccCcccccCCCCHHHHHH----HHHHHHhh----cccCCccc----HHHHHH
Q 000950 1045 KDKERVLVLAATNR--PFDLDE--AVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELASDVD----LEGIAN 1108 (1211)
Q Consensus 1045 k~~~~VlVIaTTN~--p~~Ld~--aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k----~~l~~dvd----L~~LA~ 1108 (1211)
.....|++|++|+. ...+-. .+.+|. ..+.|.+|+..+|.. +++++++. .+.....+ +..|-.
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 44578999999964 223333 444433 346777888777743 55555554 22221111 233333
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHH
Q 000950 1109 MADGYSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1109 ~T~GySgaDL~~L~~~Aa~~Airr 1132 (1211)
..---+.++|+++++.++..+...
T Consensus 289 y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 289 YDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred CCCCCcHHHHHHHHHHHHHHhccc
Confidence 332336789999999999876543
No 144
>PRK06893 DNA replication initiation factor; Validated
Probab=99.28 E-value=1.7e-10 Score=126.67 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=100.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
+.++||||||||||+|++++|+++ +....+++..... .....++.... ...+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 4455555543211 11112232222 35799999999884322
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc---HHHHhcc--CcccccCCCCHHHHHHHHHHHHhhcc
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1096 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--~~~I~v~lPd~eeR~eILk~lL~k~~ 1096 (1211)
..++.+..+++.... .+..++|++++..|..++ +.+.+|+ +..+.++.|+.++|.+|++..+....
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122233333333221 113355666666676554 7888876 46889999999999999998887655
Q ss_pred cC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 000950 1097 LA-SDVDLEGIANMADGYSGSDLKNLCV 1123 (1211)
Q Consensus 1097 l~-~dvdL~~LA~~T~GySgaDL~~L~~ 1123 (1211)
+. ++..+..|+....|- .+.|..+++
T Consensus 179 l~l~~~v~~~L~~~~~~d-~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDRD-MHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 53 556678888888763 444444444
No 145
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.28 E-value=1.2e-10 Score=144.33 Aligned_cols=232 Identities=19% Similarity=0.237 Sum_probs=138.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 974 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~ 974 (1211)
..+|++++|.+..++.+...+.. .. +.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35899999999998887665431 11 2579999999999999999998665 357899
Q ss_pred Eeccccc-------cccccchHHH----HHHHHH----------HHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH
Q 000950 975 ISMSSIT-------SKWFGEGEKY----VKAVFS----------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1033 (1211)
Q Consensus 975 I~~seL~-------s~~~G~~e~~----I~~lF~----------~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~ 1033 (1211)
++|..+. ..+++..... .+..+. .......++|||||++.| +...+..+.++++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987652 1122211110 000000 011223579999999988 3344555555554
Q ss_pred hhhhhccC-----------------CcccCCccEEEEEe-cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc
Q 000950 1034 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1034 ~LL~~ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~ 1095 (1211)
.-...+.+ +....+..+++|++ |+.+..+++++++||. .+.+++++.+++..|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 32211100 00111234566654 5668889999999995 67888899999999999998875
Q ss_pred ccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 000950 1096 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1174 (1211)
Q Consensus 1096 ~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleq 1174 (1211)
.+. ++..++.|+..+. .++...+++..+...+..+.. .. ........|+.+|+++++..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~----------~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA----------GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh----------ccCCCCeeECHHHHHHHhCC
Confidence 432 3334555666543 334434444444322222210 00 00112357999999999876
Q ss_pred hc
Q 000950 1175 VC 1176 (1211)
Q Consensus 1175 v~ 1176 (1211)
-+
T Consensus 430 ~r 431 (615)
T TIGR02903 430 SR 431 (615)
T ss_pred Cc
Confidence 43
No 146
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=133.74 Aligned_cols=128 Identities=23% Similarity=0.352 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhc--------c-ChhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccCCC
Q 000950 648 LAINELFEVALNESKSSPLIVFVKDIEKSLT--------G-NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 716 (1211)
Q Consensus 648 ~~~~~l~evl~sesk~~P~Ilf~~die~~l~--------~-~~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k~~~ 716 (1211)
..|.+||+-+.. ..|.|+|||+.|.+-. | =.++.+.+...|+.+- ..|+-|+|||+++-
T Consensus 197 r~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~------- 266 (368)
T COG1223 197 RRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL------- 266 (368)
T ss_pred HHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh-------
Confidence 368888988876 9999999999998422 1 1455555555555552 38999999996543
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchh
Q 000950 717 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 717 ~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~I 796 (1211)
||+ |.+.||+.++||.||+.+-|..|
T Consensus 267 ---------------LD~---------------------------------------aiRsRFEeEIEF~LP~~eEr~~i 292 (368)
T COG1223 267 ---------------LDP---------------------------------------AIRSRFEEEIEFKLPNDEERLEI 292 (368)
T ss_pred ---------------cCH---------------------------------------HHHhhhhheeeeeCCChHHHHHH
Confidence 454 88889999999999998888877
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHH-HHhhhhhhHhh
Q 000950 797 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 841 (1211)
Q Consensus 797 l~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~-Lv~~A~s~Al~ 841 (1211)
+..- ...-++ -+.+++.++.+|+|++|-||.+ ++..|..-|+.
T Consensus 293 le~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 293 LEYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 7664 444455 6778999999999999999976 55666555654
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=9e-11 Score=143.82 Aligned_cols=184 Identities=20% Similarity=0.220 Sum_probs=129.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999998762 2234569999999999999999999998542
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 0112344555444332 234699999999882 12344555
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. .+..+++|++|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 2356778788887888999999998 578999999999999999988776654 45567778888776 45
Q ss_pred HHHHHHHHHH
Q 000950 1116 SDLKNLCVTA 1125 (1211)
Q Consensus 1116 aDL~~L~~~A 1125 (1211)
+++.+++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5666665543
No 148
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.26 E-value=1.6e-11 Score=140.97 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcc--CCCCeEEEEcChhhhhccC--------hhhH-HHHHHHHhcC--------------CCCEEEEee
Q 000950 649 AINELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGS 703 (1211)
Q Consensus 649 ~~~~l~evl~ses--k~~P~Ilf~~die~~l~~~--------~~~~-~~i~s~L~~L--------------~g~VvVIgs 703 (1211)
+|.++|+.+...+ +.+|.||||||||..+.+. +++. ..|...++.+ ...|+||++
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaT 274 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVT 274 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEe
Confidence 5667777776553 6689999999999965521 2222 3333444331 347999999
Q ss_pred ccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHH
Q 000950 704 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQ 781 (1211)
Q Consensus 704 ~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rfer 781 (1211)
+|+++. +++ ||+| ||++
T Consensus 275 TNrpd~------------------------------LDp-------------------------------ALlRpGRfDk 293 (413)
T PLN00020 275 GNDFST------------------------------LYA-------------------------------PLIRDGRMEK 293 (413)
T ss_pred CCCccc------------------------------CCH-------------------------------hHcCCCCCCc
Confidence 995544 444 9999 9999
Q ss_pred HhhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCC----CCHHHHHHHHhhhhhhHhh
Q 000950 782 QLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 782 q~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg----~sgadI~~Lv~~A~s~Al~ 841 (1211)
.+ .+|+.+.|.+|+++|++. .+++..++..|+..+.| |.||--+.+.-.+....+.
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~--~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRD--DGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 65 489999999999999764 46777888899888776 5566555555555544443
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=8.8e-11 Score=144.69 Aligned_cols=181 Identities=21% Similarity=0.270 Sum_probs=127.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 36899999999999999998762 2344668999999999999999999998542
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++... ...-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----~-------~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----T-------NAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----H-------HHHHHHH
Confidence 33333322 11223456666555432 23599999999882 1 1233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++. ....+++|.+|+.++.|.+.+++|+ ..+.|..++.++-...++.+++++++. ++..+..|+..+.|-.
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~l- 214 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSM- 214 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-
Confidence 44443 2356788888888899999999998 689999999999999999888887654 4555777888887743
Q ss_pred HHHHHHH
Q 000950 1116 SDLKNLC 1122 (1211)
Q Consensus 1116 aDL~~L~ 1122 (1211)
+++.+++
T Consensus 215 r~al~~L 221 (576)
T PRK14965 215 RDSLSTL 221 (576)
T ss_pred HHHHHHH
Confidence 3433333
No 150
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.5e-10 Score=138.79 Aligned_cols=184 Identities=22% Similarity=0.258 Sum_probs=126.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 36899999999999999987752 2334679999999999999999999988432
Q ss_pred ------------EEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000950 972 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1035 (1211)
Q Consensus 972 ------------fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~L 1035 (1211)
++.+++... . .-..++.+-+.+ ......||+|||+|.|. . ...+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~----~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------K----EAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------H----HHHHHH
Confidence 333332111 1 112333332222 22345799999999882 1 123444
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000950 1036 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1036 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GyS 1114 (1211)
+..++. ....+++|++|+.+..+.+++++|+ ..+.+..++.++...+++..+++.++. ++..+..|+..+.| +
T Consensus 142 Lk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 444443 2246777777788889999999998 578999999999999999888876643 45567888888876 3
Q ss_pred HHHHHHHHHHH
Q 000950 1115 GSDLKNLCVTA 1125 (1211)
Q Consensus 1115 gaDL~~L~~~A 1125 (1211)
.+.+.++++..
T Consensus 216 lr~a~~~Lekl 226 (451)
T PRK06305 216 LRDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.3e-10 Score=144.16 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ecc---
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SMS--- 978 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I---~~s--- 978 (1211)
..+|++|+|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999998862 22346789999999999999999999885531100 000
Q ss_pred -------ccc-ccc-ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000950 979 -------SIT-SKW-FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1045 (1211)
Q Consensus 979 -------eL~-s~~-~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k 1045 (1211)
++. ..- .......++.+.+.+... ...|++|||+|.|- ....+.|+..++.
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEE---- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEE---- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhc----
Confidence 000 000 001234467777666543 24699999999882 1234455555554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1046 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1046 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
++..+++|++|+.++.|.+.+++|+ .++.|..++.++...+++..+.+.++. ++..+..||..+.|-. +++..++..
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLek 222 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAEQ 222 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 2356788888888899999999999 589999999999999999988876654 3344777888887643 444444443
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2e-10 Score=134.18 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=126.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E--
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F-- 972 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~----------f-- 972 (1211)
..+|++++|++.+.+.+...+.. .+.++++|||||||+|||++|+++++.+..+ +
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 36899999999999999988752 2234689999999999999999999987542 1
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCc
Q 000950 973 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1048 (1211)
Q Consensus 973 i~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~ 1048 (1211)
+.++.. .......++.++..+... ...||+|||+|.+.. ...+.++..++.. ..
T Consensus 80 ~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~ 137 (367)
T PRK14970 80 FELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PA 137 (367)
T ss_pred EEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CC
Confidence 112211 111234566777665432 246999999998721 1233444444331 23
Q ss_pred cEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1049 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1049 ~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
..++|.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..+..|+..+.| +.+.+.+.++..
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4566666777788889999998 578999999999999999988887653 55667778887765 444444444443
No 153
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.24 E-value=1.4e-10 Score=134.37 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=107.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 977 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-------~~fi~I~~ 977 (1211)
...|.+|+|+++++..|...+.. ....++||.|++|||||++|++++..+. .+|. ++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 34689999999999999876542 1235899999999999999999987762 2332 111
Q ss_pred c-------cccccc-------------------ccchHHH------HHHHHHHHH---------hcCCcEEEEccchhhh
Q 000950 978 S-------SITSKW-------------------FGEGEKY------VKAVFSLAS---------KIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 978 s-------eL~s~~-------------------~G~~e~~------I~~lF~~A~---------k~~PsILfIDEID~L~ 1016 (1211)
. .+.+.. .+..+.. +...|.... +...++||||||+.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 000000 0111111 111111111 122489999999998
Q ss_pred cCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC-CCcHHHHhccCcccccCCCC-HHHHHHHHHHHH
Q 000950 1017 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1092 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~lL 1092 (1211)
++..+..+..++++-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .++|.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 3344444444444322222 344433456899999888765 69999999999999999998 599999998864
No 154
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.2e-10 Score=138.42 Aligned_cols=186 Identities=21% Similarity=0.305 Sum_probs=127.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 35899999999999999988752 2234568999999999999999999988531
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 972 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 972 -----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
++.++.+. ...-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 01123355555544432 34699999999882 11233444
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.+++..++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 444432 234566666667788888999998 578999999999999999999887654 34457778888776 45
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
+++.++++.+..
T Consensus 215 r~al~~Ldkl~~ 226 (486)
T PRK14953 215 RDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.23 E-value=2.6e-10 Score=129.43 Aligned_cols=183 Identities=22% Similarity=0.291 Sum_probs=121.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 980 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~seL 980 (1211)
.+|+++.|.+++++.+..++.. . ...++||+||+|+|||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5899999999999999987752 1 113699999999999999999999872 34566655432
Q ss_pred ccccccchHHHHHHHH-HHHHh-----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 981 TSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF-~~A~k-----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
.+ ...++..+ ..+.. ..+.+|+|||+|.+.. ..+. .+...++... ....+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~~~~-------~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----DAQQ-------ALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----HHHH-------HHHHHHhcCC----CCCeEEE
Confidence 11 11222222 22222 2246999999998821 1111 2222222221 2345666
Q ss_pred ecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1055 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1055 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
++|.+..+.+.+.+|+. .+.++.++.++...+++.++.+.++. ++..+..|+..+.|... .+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r-~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR-KAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 77777788888888984 68999999999999999999887653 55668888888877544 4444444443
No 156
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1.7e-10 Score=142.09 Aligned_cols=190 Identities=22% Similarity=0.176 Sum_probs=130.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------- 976 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~-------- 976 (1211)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 35899999999999999997752 234568999999999999999999999865321111
Q ss_pred -----cc--------cccccc--ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 977 -----MS--------SITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 977 -----~s--------eL~s~~--~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
|. ++.... ....-..++.+.+.+... ...|+||||+|.|- . ...+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~----~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------T----AAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------H----HHHHHHHH
Confidence 10 110000 001234566776666433 24699999999882 1 12334444
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000950 1038 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1116 (1211)
Q Consensus 1038 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySga 1116 (1211)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++...+++..+++++.. ++..++.|+..+.| +.+
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44432 245677777777778888999998 689999999999999999998887654 44556777888876 455
Q ss_pred HHHHHHHHH
Q 000950 1117 DLKNLCVTA 1125 (1211)
Q Consensus 1117 DL~~L~~~A 1125 (1211)
++.++++.+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555554
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.23 E-value=4.9e-11 Score=143.11 Aligned_cols=193 Identities=23% Similarity=0.273 Sum_probs=141.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 976 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------i~I~- 976 (1211)
..+|++++|++.+...|...+.. .+-..+.||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 35899999999999999998873 23346799999999999999999999986531 1111
Q ss_pred ccccccc-ccc---------chHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC
Q 000950 977 MSSITSK-WFG---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1042 (1211)
Q Consensus 977 ~seL~s~-~~G---------~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl 1042 (1211)
|-.+... +.. .+-..++.+.+.+.. ....|.+|||+|.|- ....+.|+..+..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 1111111 111 122356666655543 234699999999882 4456667766654
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000950 1043 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1043 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
++..|.+|.+|..++.++..+++|+ .++.|...+.++....|..++.++.+. ++.-+..+|+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 688999999999999999999998876 44457778888877 55676666
Q ss_pred HHHHHhh
Q 000950 1122 CVTAAHC 1128 (1211)
Q Consensus 1122 ~~~Aa~~ 1128 (1211)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 6666544
No 158
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.23 E-value=1.1e-10 Score=130.75 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=95.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccchHHH-HH-------------------HHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VK-------------------AVFSL 998 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se------L~s~~~G~~e~~-I~-------------------~lF~~ 998 (1211)
..+||+||||||||++|+++|..+|.+|+.++|.. +.+.+.+..... .. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998854 333332221111 11 11222
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-----CCccEEEEEecCCC-----CCCcHHHHh
Q 000950 999 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DKERVLVLAATNRP-----FDLDEAVVR 1068 (1211)
Q Consensus 999 A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-----~~~~VlVIaTTN~p-----~~Ld~aLlr 1068 (1211)
|.+ .+.+|+||||+++ ++..+..+..++++....+.+.... .+.++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999987 3344445555554433222221111 22468899999975 367899999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHH
Q 000950 1069 RLPRRLMVNLPDAPNREKIIRVIL 1092 (1211)
Q Consensus 1069 RF~~~I~v~lPd~eeR~eILk~lL 1092 (1211)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 688999999999999998864
No 159
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=3.1e-11 Score=143.09 Aligned_cols=202 Identities=25% Similarity=0.294 Sum_probs=135.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 980 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL- 980 (1211)
..+|++|+|....+..+.+.+.. +......|||.|++||||..+|++|.+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999999998888886652 12234579999999999999999998776 789999999763
Q ss_pred ----ccccccchHHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCc
Q 000950 981 ----TSKWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1048 (1211)
Q Consensus 981 ----~s~~~G~~e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~ 1048 (1211)
.+..||..... -.++|+.|.. +.||||||..| +...|..+.+++++-...--|-....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 45556532111 2234444444 79999999988 5567778888888766555554444567
Q ss_pred cEEEEEecCCC--C-----CCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhc----ccC----CcccHHHHHHH
Q 000950 1049 RVLVLAATNRP--F-----DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----ELA----SDVDLEGIANM 1109 (1211)
Q Consensus 1049 ~VlVIaTTN~p--~-----~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~----~l~----~dvdL~~LA~~ 1109 (1211)
.|+||+|||+. + .+-+.+.-|+ .++.+.+|...+|.+ +..+|+.+. +.. .+..+..|...
T Consensus 381 DVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 381 DVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 89999999973 1 2222333366 478888999888865 445555542 111 12223333333
Q ss_pred cCCCcHHHHHHHHHHHHh
Q 000950 1110 ADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1110 T~GySgaDL~~L~~~Aa~ 1127 (1211)
.=--+.++|.|+++++..
T Consensus 460 ~WPGNVRELeNviER~v~ 477 (560)
T COG3829 460 DWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCchHHHHHHHHHHHHh
Confidence 322355788888888774
No 160
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.22 E-value=1.2e-10 Score=134.35 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=105.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 976 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~I~ 976 (1211)
..|.+|+|++++++.|.-.+.. . ...++||+|+||||||++|++++.-+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4689999999999888754321 0 12579999999999999999999988 332 11111
Q ss_pred cc-cc--------c---------------cccccch--HHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 000950 977 MS-SI--------T---------------SKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1022 (1211)
Q Consensus 977 ~s-eL--------~---------------s~~~G~~--e~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~ 1022 (1211)
+. ++ . ...+|.. +.. -.+.+.. ...++||||||+.+ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~---A~~GiL~lDEInrl-----~~ 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLAR---ANRGYLYIDEVNLL-----ED 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEE---cCCCeEEecChHhC-----CH
Confidence 10 00 0 0022210 000 0111111 12379999999988 33
Q ss_pred chHHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccCcccccCCCCH-HHHHHHHHHHH
Q 000950 1023 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1092 (1211)
Q Consensus 1023 ~~~e~l~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~lL 1092 (1211)
..+..+...+++-. ...+|.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.++++...
T Consensus 143 ~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 34445545444332 223454444457899999999754 689999999998899988876 99999998754
No 161
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=2.5e-10 Score=138.50 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 36899999999999999998752 223456899999999999999999998732
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 971 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 971 ----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
.++.++.+.- ..-..++.+...+... ...|++|||+|.| +. ...+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----t~-------~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----TK-------EAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----CH-------HHHHHHH
Confidence 1233332110 0123455555443321 1259999999988 21 1233344
Q ss_pred hhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1037 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1037 ~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
..++.. +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++-...++..+..+++. ++..+..|+....| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 444432 245667777777899999999997 689999999999999999998887654 45567888888876 66
Q ss_pred HHHHHHHHHHHhh
Q 000950 1116 SDLKNLCVTAAHC 1128 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~ 1128 (1211)
+++.++++.|...
T Consensus 213 R~alnlLdqai~~ 225 (535)
T PRK08451 213 RDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766544
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.21 E-value=4.5e-11 Score=144.18 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcc-CCCCeEEEEcChhhhhcc-----Chhh----HHHHHHHHhcCC--CCEEEEeeccCCCCccccCCC
Q 000950 649 AINELFEVALNES-KSSPLIVFVKDIEKSLTG-----NNDA----YGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 716 (1211)
Q Consensus 649 ~~~~l~evl~ses-k~~P~Ilf~~die~~l~~-----~~~~----~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k~~~ 716 (1211)
.+..+|+.+...+ ...|.||||||+|.++.. +.+. .+.|...|+.+. ++|+|||+||+++.
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~------- 345 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDM------- 345 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhh-------
Confidence 5666777766533 347999999999997652 1222 233444444443 58999999996544
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccc
Q 000950 717 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 794 (1211)
Q Consensus 717 ~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~ 794 (1211)
||| |++| ||++++++++|+.+.|.
T Consensus 346 ---------------LDp---------------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 346 ---------------IDP---------------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred ---------------CCH---------------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 343 8988 99999999999999999
Q ss_pred hhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 795 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 795 ~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
+|++.|..- ..++ + .....+.|+.++++.++|..+....+.
T Consensus 372 ~Il~~~l~~-~l~l-~----~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-D----ADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-h----HHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999998421 1122 2 223346899999999999999766554
No 163
>PRK05642 DNA replication initiation factor; Validated
Probab=99.20 E-value=8.2e-10 Score=121.72 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=104.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1020 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1020 (1211)
.+.++|+||+|+|||+|++++++++ +..++++++.++... ...+.+.... ..+|+|||++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3579999999999999999999865 677888887765532 1122222222 2589999999874321
Q ss_pred CCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhc
Q 000950 1021 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1021 s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~ 1095 (1211)
..++.+..+++.+. .+++.+||+++..|.. +.+.+++||. ..+.+..|+.++|.++++......
T Consensus 114 --~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 114 --DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred --HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 22344555555442 1245677777655543 3688999984 677889999999999999665554
Q ss_pred ccC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1096 ELA-SDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1096 ~l~-~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
.+. ++..++.|+....+ +.+.+..+++.
T Consensus 183 ~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 183 GLHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 432 45557778887765 45555555443
No 164
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3.5e-10 Score=133.76 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=123.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 36899999999999999887752 2334569999999999999999999998652
Q ss_pred -------------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHH
Q 000950 972 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAM 1028 (1211)
Q Consensus 972 -------------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l 1028 (1211)
++.++... ...-..++.+.+.+... ...|+||||+|.|. . .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----~---~-- 142 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----I---A-- 142 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----H---H--
Confidence 11221111 01123455554444221 23599999999882 1 1
Q ss_pred HHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHH
Q 000950 1029 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1107 (1211)
Q Consensus 1029 ~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l-~~dvdL~~LA 1107 (1211)
..+.|+..++. .....++|.+|+.+..+.+++.+|+ ..+.+..++.++-...++..++..+. .++..++.|+
T Consensus 143 --~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 143 --AFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred --HHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12233333332 2234566666667788888999998 58999999999999899988877654 3555678888
Q ss_pred HHcCCCcHHHHHHHHHHH
Q 000950 1108 NMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1108 ~~T~GySgaDL~~L~~~A 1125 (1211)
..+.|. .+.+.++++.+
T Consensus 216 ~~s~g~-lr~a~~~L~kl 232 (397)
T PRK14955 216 RKAQGS-MRDAQSILDQV 232 (397)
T ss_pred HHcCCC-HHHHHHHHHHH
Confidence 888774 44454544443
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.3e-10 Score=141.67 Aligned_cols=182 Identities=21% Similarity=0.254 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------- 971 (1211)
..+|++++|++.+++.|...+.. .+-..++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36899999999999999998763 1223579999999999999999999998652
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHh
Q 000950 972 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1034 (1211)
Q Consensus 972 -------------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~ 1034 (1211)
++.++.. ....-..++.+...+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222211 112345677777766532 23699999999882 123344
Q ss_pred hhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCC
Q 000950 1035 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1035 LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~Gy 1113 (1211)
|+..++. ....+++|++|+.+..+.+.+++|+ ..+.|..++.++-...++.++.++++. ++..+..|+..+.|.
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 5555553 2355777777778888999999998 678898999888888888887775543 344577888888775
Q ss_pred cHHHHHHHHH
Q 000950 1114 SGSDLKNLCV 1123 (1211)
Q Consensus 1114 SgaDL~~L~~ 1123 (1211)
. +++.++++
T Consensus 216 l-r~A~~lLe 224 (620)
T PRK14948 216 L-RDAESLLD 224 (620)
T ss_pred H-HHHHHHHH
Confidence 4 34444433
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=2e-10 Score=112.57 Aligned_cols=124 Identities=40% Similarity=0.622 Sum_probs=80.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHH---HHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~---I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
..+++|+||||+|||++++.++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 89999999877554322211111 1222334445568999999999871
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccCcccccC
Q 000950 1018 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1018 ~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~ 1077 (1211)
.........++..+.... .....+.+|++++... .+++.+.+||+.++.++
T Consensus 98 ----~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ----RGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----HHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111222222333222111 1135688888888776 78889999998666654
No 167
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=4.2e-10 Score=135.00 Aligned_cols=170 Identities=17% Similarity=0.260 Sum_probs=114.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH---HHHHHHHHHHhcCCcEEEEccchhhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~---~I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
++++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |..-. ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999865 4778889888776554332211 1111 11111 245799999999884
Q ss_pred cCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---CCcHHHHhccC--cccccCCCCHHHHHHHHHHH
Q 000950 1017 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 1091 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~l 1091 (1211)
++. ..++.+..+++.+... ...+||++...|. .+++.+++||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 221 2344555555554321 2334444444444 45788899984 57889999999999999999
Q ss_pred Hhhccc---CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1092 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1092 L~k~~l---~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+...++ .++..+..|+....| +.+.|..+|..+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 987543 345567888888876 5778888877765433
No 168
>PRK06620 hypothetical protein; Validated
Probab=99.18 E-value=6.7e-10 Score=120.96 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=95.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
+.++||||+|+|||+|++++++..+..++. ... . ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH----h-cCCEEEEeccccc--------h
Confidence 579999999999999999999988754322 000 0 01111 1 2379999999965 1
Q ss_pred HHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC--CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-C
Q 000950 1025 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 1099 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~ 1099 (1211)
...+..+++.+. +.+..+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+....+. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 1245677777755543 5 88999984 378999999999999999888765443 5
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1100 DVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1100 dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
+..++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5567888888865 44555555544
No 169
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.16 E-value=8.2e-11 Score=139.52 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=141.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 981 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~-- 981 (1211)
.+.+++|....++++.+.+.. . ......|||+|++||||..+|++|.... +.||+.+||+.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~k----------v--A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK----------V--APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH----------H--hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456799999999999887753 1 1223469999999999999999998776 6799999997743
Q ss_pred ---cccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 982 ---SKWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 982 ---s~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
+..||+... .-.+.|+.|.. +.||||||..| +...|..+.+++++-....-|-....+-.|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 345553321 12235555555 89999999988 5556777777877766555554444567899
Q ss_pred EEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhc----cc-CCcccHHHHHHHcC-CC-
Q 000950 1052 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-ASDVDLEGIANMAD-GY- 1113 (1211)
Q Consensus 1052 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~----~l-~~dvdL~~LA~~T~-Gy- 1113 (1211)
||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++|+++. +. ...+.-+.++.+.. .|
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999873 23445555577 588999999988876 566666542 21 13344444554443 23
Q ss_pred -cHHHHHHHHHHHHhhhhHHH
Q 000950 1114 -SGSDLKNLCVTAAHCPIREI 1133 (1211)
Q Consensus 1114 -SgaDL~~L~~~Aa~~Airrl 1133 (1211)
+.++|+|++++++..+-...
T Consensus 358 GNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 358 GNVRELENVVERAVILSEGPE 378 (464)
T ss_pred hHHHHHHHHHHHHHhcCCccc
Confidence 55788888888876554443
No 170
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.16 E-value=9.3e-10 Score=120.20 Aligned_cols=167 Identities=19% Similarity=0.343 Sum_probs=105.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH-HHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~-~I~~lF~~A~k~~PsILfIDEID~L~~~ 1018 (1211)
..++||||+|+|||+|.+++++++ +..++++++.++...+...... .+.. |....+ ...+|+||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 459999999999999999998875 5778899987765543322111 1111 222222 4579999999998421
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHh
Q 000950 1019 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1019 r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
+..++.+..+++.+... ++.+||++...|.. +++.+.+||. ..+.+..|+.+.|.+|++..+.
T Consensus 113 ---~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 ---QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 12345555555555421 34566666555543 5688889874 4789999999999999999998
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1094 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1094 k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
..++. ++..++.|+....+ +.++|..++..-.
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 86665 44456777777653 6677777766544
No 171
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=7.1e-10 Score=137.14 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=123.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 972 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f------------ 972 (1211)
..+|++|+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887752 12335689999999999999999999885321
Q ss_pred -------------EEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000950 973 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1035 (1211)
Q Consensus 973 -------------i~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~L 1035 (1211)
+.++... ...-..++.+...+.. ....||||||+|.|- . ..++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~----~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------T----AAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------H----HHHHHH
Confidence 2222111 0112334554443332 224699999999882 1 123344
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000950 1036 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1036 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GyS 1114 (1211)
+..++.. ...+++|.+++..+.+.+.+++|+ ..+.|..++..+...+++.++...++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 4444432 245666767777788888899898 578899999999999999888876653 44557788888876 5
Q ss_pred HHHHHHHHHH
Q 000950 1115 GSDLKNLCVT 1124 (1211)
Q Consensus 1115 gaDL~~L~~~ 1124 (1211)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 172
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.1e-09 Score=135.34 Aligned_cols=175 Identities=18% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 972 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f------------ 972 (1211)
..+|++|+|++.+++.|+..+.. .+-+..+||+||+|+|||++|+.+|+.+.+.-
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887752 22345799999999999999999999996621
Q ss_pred --------------------EEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHH
Q 000950 973 --------------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1028 (1211)
Q Consensus 973 --------------------i~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l 1028 (1211)
+.++... ......++.+.+.+.. ....|++|||+|.|. ..
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~-- 142 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TA-- 142 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HH--
Confidence 1111100 0112345555444422 223699999999882 11
Q ss_pred HHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHH
Q 000950 1029 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1107 (1211)
Q Consensus 1029 ~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l-~~dvdL~~LA 1107 (1211)
..+.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++-...++..+..+++ .++..++.|+
T Consensus 143 --a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 143 --AFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred --HHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 233444444432 234566666667788889999998 68999999999999888888887664 3556678888
Q ss_pred HHcCCCcH
Q 000950 1108 NMADGYSG 1115 (1211)
Q Consensus 1108 ~~T~GySg 1115 (1211)
..+.|..+
T Consensus 216 ~~s~Gdlr 223 (620)
T PRK14954 216 RKAQGSMR 223 (620)
T ss_pred HHhCCCHH
Confidence 88887443
No 173
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=2.6e-10 Score=133.88 Aligned_cols=201 Identities=24% Similarity=0.285 Sum_probs=140.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 980 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL- 980 (1211)
...+.+|+|....+.++.+.+.. . ......|||.|.+||||..+|++|.+.. +-||+.+||+.+
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------V-----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------V-----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------H-----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 56778899999999998887763 1 1223579999999999999999998877 689999999774
Q ss_pred ----ccccccchHHHHHHHHHHHHhcC--------CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCc
Q 000950 981 ----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1048 (1211)
Q Consensus 981 ----~s~~~G~~e~~I~~lF~~A~k~~--------PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~ 1048 (1211)
.+..||+ .++.|.-|.... .+.||+|||..| +...|..+.+++++--.+--|-...-+.
T Consensus 287 esLlESELFGH----eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFGH----EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhcc----cccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 4556664 344454443332 379999999988 5667888888888766555554444457
Q ss_pred cEEEEEecCCCCCCcHHHHh---------ccCcccccCCCCHHHHHH----HHHHHHhhc----ccC----CcccHHHHH
Q 000950 1049 RVLVLAATNRPFDLDEAVVR---------RLPRRLMVNLPDAPNREK----IIRVILAKE----ELA----SDVDLEGIA 1107 (1211)
Q Consensus 1049 ~VlVIaTTN~p~~Ld~aLlr---------RF~~~I~v~lPd~eeR~e----ILk~lL~k~----~l~----~dvdL~~LA 1107 (1211)
.|.|||+||+ +|.+++.. |+ .++.+.+|...+|.+ +.++|+++. +.. +...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 8999999997 34333333 44 367777888888854 445555542 221 122244444
Q ss_pred HHcCCCcHHHHHHHHHHHHhhh
Q 000950 1108 NMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1108 ~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
++.---+.++|++++++|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 4443447799999999999855
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.12 E-value=2.7e-10 Score=130.39 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=100.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccchH----------HHHHHHHHHHHhcCCcEEEEccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1012 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~--~~G~~e----------~~I~~lF~~A~k~~PsILfIDEI 1012 (1211)
++|||.||||||||++|+.+|..++.+++.+++...... ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999998654332 344311 112234455554 4588999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHh-hhhhccC--CcccCCccEEEEEecCCCC------------CCcHHHHhccCcccccC
Q 000950 1013 DSMLGRRENPGEHEAMRKMKNE-FMVNWDG--LRTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1013 D~L~~~r~s~~~~e~l~~il~~-LL~~ldg--l~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRF~~~I~v~ 1077 (1211)
|.. .+..+..+..+++. -...+.+ -.......++||||+|... .++++++.||..++.+.
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 44445555556552 1111211 1112335799999999843 57899999997778899
Q ss_pred CCCHHHHHHHHHHHHh
Q 000950 1078 LPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1078 lPd~eeR~eILk~lL~ 1093 (1211)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999887643
No 175
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-10 Score=128.53 Aligned_cols=127 Identities=19% Similarity=0.227 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhc--------cChhhHHHHHHHHhcCC-----CCEEEEeeccCCCCccccCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSH 715 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~--------~~~~~~~~i~s~L~~L~-----g~VvVIgs~~~~d~~k~k~~ 715 (1211)
+|.+-|.-+.. .+|.|||++|||.... .++++-..+...|+.+. +.|-+|.++|++|.
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt------ 283 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT------ 283 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc------
Confidence 66666666655 8999999999999554 25666666777777775 49999999996555
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhcc
Q 000950 716 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 793 (1211)
Q Consensus 716 ~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR 793 (1211)
||| ||+| |.++.+++|+|++.+|
T Consensus 284 ----------------Ldp---------------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 284 ----------------LDP---------------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred ----------------cch---------------------------------------hhcCCccccceeccCCcchhhc
Confidence 444 9999 9999999999999999
Q ss_pred chhhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 794 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 794 ~~Il~IhT~-l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
..|++||.. +...+-- +-+.+.....+|+|+|++..|++|--+++.
T Consensus 309 ~~I~Kih~~~i~~~Gei--d~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGEI--DDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred eeeEeeccccccccccc--cHHHHHHHHhccChHHHhhhcccccccccc
Confidence 999999986 4444432 245677778899999999999999877764
No 176
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.11 E-value=4.4e-10 Score=129.79 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=107.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccchH-------HHHHHHHHHHHhcCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~-----~~G~~e-------~~I~~lF~~A~k~~PsILfI 1009 (1211)
..|||+|++||||+++|++|.... +.||+.+||..+... .||... .....+|..|. .++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 469999999999999999998766 579999999875332 222110 01112344443 489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCCHH
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
|||+.| +...+..+.++++.-.....+.......++.+|++|+.. ..+.+.+..|+. .+.+.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999998 444455555554432221112112223568999999753 245567777883 5678888887
Q ss_pred HHHH----HHHHHHhhc----ccC--Cccc---HHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1083 NREK----IIRVILAKE----ELA--SDVD---LEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1083 eR~e----ILk~lL~k~----~l~--~dvd---L~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+|.+ +++.++.+. +.. ..+. +..|....=.-+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7755 445555432 111 1223 333444332346688888888887654
No 177
>PHA02244 ATPase-like protein
Probab=99.11 E-value=9.5e-10 Score=127.27 Aligned_cols=130 Identities=20% Similarity=0.278 Sum_probs=85.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc---chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G---~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
..|||+||||||||+||+++|..++.+|+.++.-.-.....| ........-|..|.+ ..++||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 469999999999999999999999999999984210011111 111112223334433 4589999999977 3
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-----------CCCcHHHHhccCcccccCCCCH
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 1081 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRF~~~I~v~lPd~ 1081 (1211)
+..+..+..++......+.+-....+.++.+|+|+|.+ ..|++++++|| ..|.+..|+.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 33344445555432222222222234679999999973 57899999999 5789999983
No 178
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.10 E-value=5.1e-10 Score=129.13 Aligned_cols=201 Identities=19% Similarity=0.172 Sum_probs=121.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 982 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s- 982 (1211)
.|++++|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 3567888888888888876531 1122469999999999999999998665 57999999987632
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 983 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 983 ----~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
.+||.... .....|..| ..++|||||||.| +...+..+..+++.-.....+.....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 22332110 011233333 3589999999998 3334444444443321111111111224688
Q ss_pred EEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----cC--Cccc---HHHHHHHcC
Q 000950 1052 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA--SDVD---LEGIANMAD 1111 (1211)
Q Consensus 1052 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l~--~dvd---L~~LA~~T~ 1111 (1211)
||++|+.. ..+.+.+..||. .+.+.+|...+|.+ ++++++.... .. ..++ +..|....=
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99988753 356677777883 46788888888755 5555554321 11 1223 333333332
Q ss_pred CCcHHHHHHHHHHHHhh
Q 000950 1112 GYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1112 GySgaDL~~L~~~Aa~~ 1128 (1211)
-.+.++|+++++.|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 34668888888888764
No 179
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=1.6e-09 Score=125.38 Aligned_cols=164 Identities=16% Similarity=0.254 Sum_probs=102.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 973 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~fi------ 973 (1211)
.|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 377899999999887654431 112579999999999999999999776 22221
Q ss_pred ---EEecc-------------------ccc-----cccccchH--HH--------HHHHHHHHHhcCCcEEEEccchhhh
Q 000950 974 ---NISMS-------------------SIT-----SKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 974 ---~I~~s-------------------eL~-----s~~~G~~e--~~--------I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
..+|. ++- ...+|... .. -.+++.. ...++||||||+.|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC-
Confidence 00011 000 01222210 00 0012222 23489999999998
Q ss_pred cCCCCCchHHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccCcccccCCCCH-HHHHHHHHHHH
Q 000950 1017 GRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1092 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~lL 1092 (1211)
++..+..+..++++-. ...+|.......++++|+|+|..+ .+.++++.||...+.+..|.. ++|.+|++...
T Consensus 144 ----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3334444444443321 122343333346789999998755 799999999998899998875 88999998753
No 180
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=1e-09 Score=136.84 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=108.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 968 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el------------------ 968 (1211)
.|.+|+|++.++..|.-.... ....+|||+|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887654431 112479999999999999999999887
Q ss_pred -----------------CCcEEEEeccccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 969 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 969 -----------------g~~fi~I~~seL~s~~~G~~--e~~I--------~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
..+|+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~ 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----D 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----C
Confidence 35677766654444444432 1111 1112222 2379999999998 3
Q ss_pred CchHHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCC-CCCcHHHHhccCcccccCCCC-HHHHHHHHHHHHh
Q 000950 1022 PGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVILA 1093 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~lL~ 1093 (1211)
...+..+..++++-. ....+.....+.+++||+|+|.. ..+.++++.||+..+.++.|. .++|.++++..+.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 334444444444322 12233333334679999999864 468899999999878777664 6788888876543
No 181
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.4e-09 Score=131.43 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++|+|++.+++.|...+.. .+.+..+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 36899999999999999998762 223456999999999999999999998753
Q ss_pred -----------cEEEEeccccccccccchHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhh
Q 000950 971 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1035 (1211)
Q Consensus 971 -----------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~L 1035 (1211)
+++.+++... .....++.+...+...+ ..|++|||+|.|- . ...+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----~-------~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----Q-------AAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----H-------HHHHHH
Confidence 2333333210 11334666665554332 3599999999882 1 123344
Q ss_pred hhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCc
Q 000950 1036 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1036 L~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GyS 1114 (1211)
+..++.. ....++|.+|+.+..+.+.+++|+ ..+.|..++.++-..+++.++.++++. ++..+..|+..+.|.
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gd- 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGG- 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 4444432 245667777777788999999998 679999999999999999988887765 344578888888764
Q ss_pred HHHHHHHHHH
Q 000950 1115 GSDLKNLCVT 1124 (1211)
Q Consensus 1115 gaDL~~L~~~ 1124 (1211)
.+++.++++.
T Consensus 216 lr~al~~Lek 225 (614)
T PRK14971 216 MRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 182
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.06 E-value=9e-10 Score=134.20 Aligned_cols=202 Identities=20% Similarity=0.285 Sum_probs=125.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 974 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e-----------lg~~fi~ 974 (1211)
.+|++|+|....++.+.+.+.. +.. ....|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YAR-----SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 3688899999988888887752 111 2246999999999999999999887 3679999
Q ss_pred Eecccccc-----ccccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC
Q 000950 975 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1041 (1211)
Q Consensus 975 I~~seL~s-----~~~G~~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldg 1041 (1211)
+||+.+.. ..||..+. .-..+|+.|. .+.||||||+.| +...|..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 23342211 1123555554 389999999998 444555555555443222212
Q ss_pred CcccCCccEEEEEecCCCC-------CCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc--cCCcccH-----
Q 000950 1042 LRTKDKERVLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE--LASDVDL----- 1103 (1211)
Q Consensus 1042 l~~k~~~~VlVIaTTN~p~-------~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~--l~~dvdL----- 1103 (1211)
-....+.++.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ +++.++.+.. ......-
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 2112235679999997631 2333455566 357888899888765 5566665421 1111111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHhh
Q 000950 1104 -----EGIANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1104 -----~~LA~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
..|....=-.+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1222222223668999999988763
No 183
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.06 E-value=6.1e-10 Score=135.62 Aligned_cols=202 Identities=22% Similarity=0.258 Sum_probs=124.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s 982 (1211)
.+|++|+|....++.+.+.+.. +.. ....|||+|++||||+++|++|.+.. +.||+.+||..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 4688999999988888887752 111 22469999999999999999998765 67999999987532
Q ss_pred -----ccccchHH--------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc
Q 000950 983 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1049 (1211)
Q Consensus 983 -----~~~G~~e~--------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~ 1049 (1211)
..||..+. ....+|+.|. .+.||||||+.| +...+..+.+++++-....-|-....+..
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 23332211 1223455554 389999999998 44455555555544222111211112345
Q ss_pred EEEEEecCCCC-------CCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcccC--Cccc---HHH-------H
Q 000950 1050 VLVLAATNRPF-------DLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEELA--SDVD---LEG-------I 1106 (1211)
Q Consensus 1050 VlVIaTTN~p~-------~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~l~--~dvd---L~~-------L 1106 (1211)
+.+|++|+..- .+.+.+..|+ ..+.+.+|...+|.+ +++.++.+.... -... +.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 78999987642 2333444465 357788888888765 555666543211 0122 222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHhh
Q 000950 1107 ANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1107 A~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
....=-.+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222233568888888888754
No 184
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.05 E-value=5.6e-10 Score=136.73 Aligned_cols=206 Identities=20% Similarity=0.228 Sum_probs=125.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
..+|++++|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.+||..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999999988888877531 1123469999999999999999999875 5799999998763
Q ss_pred cc-----cccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc
Q 000950 982 SK-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1049 (1211)
Q Consensus 982 s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~ 1049 (1211)
.. .||..... ....|..| ..++||||||+.| +...+..+.+++++-.....+-......+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 32 22211100 01122222 3589999999998 33344444444433211111111111245
Q ss_pred EEEEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHH----HHHHHHHhhcc----cC---CcccHHHHHHHcC
Q 000950 1050 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEE----LA---SDVDLEGIANMAD 1111 (1211)
Q Consensus 1050 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~lL~k~~----l~---~dvdL~~LA~~T~ 1111 (1211)
+.+|++|+.. ..+.+.+..|+. .+.+.+|...+|. .|++.++.+.. .. ++..+..|....=
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 8899988653 245566666773 5667777776664 46666665422 11 2222444444443
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 000950 1112 GYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1112 GySgaDL~~L~~~Aa~~Air 1131 (1211)
.-+.++|+++++.|+..+-.
T Consensus 411 PGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 411 PGNVRELENCLERTATLSRS 430 (534)
T ss_pred CChHHHHHHHHHHHHHhCCC
Confidence 34678999999988865433
No 185
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.1e-09 Score=120.85 Aligned_cols=200 Identities=22% Similarity=0.275 Sum_probs=128.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 984 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-----~fi~I~~seL~s~~ 984 (1211)
.+.+.++.++++...+...+. + . .|.+++|+|+||||||.+++.++.++.- .+++|||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--E-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--C-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 378889999999887654332 1 2 3356999999999999999999998833 38999996643221
Q ss_pred ---------------ccc-hHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000950 985 ---------------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1047 (1211)
Q Consensus 985 ---------------~G~-~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~ 1047 (1211)
.|. .......+++...+ ...-||+|||+|.|..+.+ .++.+|....... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~----~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN----K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc----c
Confidence 111 12233334443333 3456889999999965432 3444444333222 4
Q ss_pred ccEEEEEecCCC---CCCcHHHHhccC-cccccCCCCHHHHHHHHHHHHhhc---ccCCcccHHHHHHHcCCC--cHHHH
Q 000950 1048 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGY--SGSDL 1118 (1211)
Q Consensus 1048 ~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k~---~l~~dvdL~~LA~~T~Gy--SgaDL 1118 (1211)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... ...++..+..+|....-. ..+--
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 678999999876 467888888764 468999999999999999987642 222333344444433322 33334
Q ss_pred HHHHHHHHhhhhHH
Q 000950 1119 KNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1119 ~~L~~~Aa~~Airr 1132 (1211)
..+|+.|+..|-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 46677777665544
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.04 E-value=2e-09 Score=115.97 Aligned_cols=186 Identities=24% Similarity=0.322 Sum_probs=127.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSSI 980 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-g~----~fi~I~~seL 980 (1211)
..+.||+|.++..+.|.-... .+ .. ++++|.||||+|||+-+.++|+++ |- -+.++|+++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~-----------~g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK-----------EG-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH-----------cC-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 457899999999999877554 22 22 489999999999999999999998 32 3567777663
Q ss_pred ccccccchHHHHHHHHHHHH-hcCC---cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 981 TSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~-k~~P---sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
.+ +......++ .|..-+ ..+| .||++||+|++ ..+.|+++++.++-.. ....+..++
T Consensus 90 RG--IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaC 150 (333)
T KOG0991|consen 90 RG--IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALAC 150 (333)
T ss_pred cc--cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhh
Confidence 22 111112222 333322 2233 59999999999 4567888888876432 335777889
Q ss_pred CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1057 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1057 N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
|....+-+.+.+|+ -.+.+...+..+...-+....+.+.+. .+.-++.+....+|.....|.+|....
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 99999999999988 456666666666655555555655554 444577777777787777777775544
No 187
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.03 E-value=8.2e-10 Score=98.17 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=58.8
Q ss_pred EEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEEEc
Q 000950 114 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 184 (1211)
Q Consensus 114 ~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~f~ 184 (1211)
++|||+..||+.|+|+.+|..||.|...+. ...+|++. ++||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 689999999999999999999999997644 23899997 57888 899999999999999999999985
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.03 E-value=1.2e-09 Score=133.13 Aligned_cols=204 Identities=17% Similarity=0.229 Sum_probs=127.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 982 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s- 982 (1211)
.+.+++|....++.+.+.+.. + ......|||+|++||||+++|++|.... +.+|+.+||..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~-----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------V-----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 456788998888888887763 1 1123569999999999999999998875 57999999987643
Q ss_pred ----ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 983 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 983 ----~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
..||.... .....|+.|. .++|||||||.| +...+..+.++++.-....-+-....+..+.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 22332111 0112344443 489999999998 3344444444444322111111112235689
Q ss_pred EEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----cC-Cccc---HHHHHHHcCC
Q 000950 1052 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----LA-SDVD---LEGIANMADG 1112 (1211)
Q Consensus 1052 VIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l~-~dvd---L~~LA~~T~G 1112 (1211)
+|++|+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+.. .. ..+. +..|....=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999763 24556666677 357788898888865 4555554421 11 1222 3444444434
Q ss_pred CcHHHHHHHHHHHHhhhhH
Q 000950 1113 YSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1113 ySgaDL~~L~~~Aa~~Air 1131 (1211)
.+.++|+++++.|+..+..
T Consensus 404 GNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 404 GNVRELEHVISRAALLARA 422 (509)
T ss_pred CcHHHHHHHHHHHHHhcCC
Confidence 4678999999998876543
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.02 E-value=2.4e-09 Score=134.92 Aligned_cols=205 Identities=20% Similarity=0.271 Sum_probs=127.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s 982 (1211)
..|++++|....++.+.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46788999998888887766531 1122469999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccE
Q 000950 983 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1050 (1211)
Q Consensus 983 -----~~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~V 1050 (1211)
.++|... ......|+.|. .++||||||+.| +...+..+.+++++-.....+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2333211 11123344443 489999999998 334455555544432221112111223568
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcC
Q 000950 1051 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMAD 1111 (1211)
Q Consensus 1051 lVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l----~~dvdL~~LA~~T~ 1111 (1211)
.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ +++.++.+.. . .++..+..|....=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999763 23444555566 357788999888866 5555555421 1 12222344444433
Q ss_pred CCcHHHHHHHHHHHHhhhhH
Q 000950 1112 GYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1112 GySgaDL~~L~~~Aa~~Air 1131 (1211)
-.+.++|++++++|+..+-.
T Consensus 592 PGNvrEL~~~i~~a~~~~~~ 611 (686)
T PRK15429 592 PGNVRELENVIERAVLLTRG 611 (686)
T ss_pred CCcHHHHHHHHHHHHHhCCC
Confidence 44678999999988865433
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.8e-09 Score=132.53 Aligned_cols=182 Identities=22% Similarity=0.384 Sum_probs=135.2
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 976 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~ 976 (1211)
.+|-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456688998888888887752 223567899999999999999999876 56788899
Q ss_pred cccccc--ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-HHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 977 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 977 ~seL~s--~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~-~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
+..+.. +|-|+.|..++.+..+..+..+.||||||||.+.+.....+. ..+.+-+.-.| .++.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 887653 588999999999999999998999999999999876544332 22222222221 23668889
Q ss_pred EecCC-----CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-----CcccHHHHHHHcCCC
Q 000950 1054 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1113 (1211)
Q Consensus 1054 aTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-----~dvdL~~LA~~T~Gy 1113 (1211)
++|.- ...-|+++-||| ..|.+..|+.++-..||+.+-.+...+ .|..+...+.++.-|
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 88853 346789999999 678999999999999999887663322 333455555555544
No 191
>PRK09087 hypothetical protein; Validated
Probab=99.00 E-value=6.6e-09 Score=114.15 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=93.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
+.++|+||+|+|||+|++++++..++.++.. ..+.. .++..... .+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876654433 22111 11111112 589999999761 12
Q ss_pred HHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-
Q 000950 1025 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1098 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~- 1098 (1211)
++.+..+++.+.. .++.+||+++..|.. ..+.+++||. ..+.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3445555555432 144566666655542 3578899884 689999999999999999999876553
Q ss_pred CcccHHHHHHHcCC
Q 000950 1099 SDVDLEGIANMADG 1112 (1211)
Q Consensus 1099 ~dvdL~~LA~~T~G 1112 (1211)
++..++.|+....|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 55567888887764
No 192
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1e-08 Score=117.57 Aligned_cols=172 Identities=18% Similarity=0.296 Sum_probs=113.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecc
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISMS 978 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~--------~fi~I~~s 978 (1211)
+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 233457899999999999999999998733 22333221
Q ss_pred ccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 979 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
.+..+ .-..++.+.+.+.. ....|++||++|.| + ....+.|+..++. ++..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12235555554432 23469999999988 2 1223445555543 224566666
Q ss_pred ecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1055 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1055 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
+|+.++.+.+++++|+ ..+.+..|+.++-..+++..+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 6677899999999999 68999999998887777655431 223345567777766443
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=110.82 Aligned_cols=190 Identities=23% Similarity=0.300 Sum_probs=134.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
...+.+|.|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|++|+.+++ +..+++|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999886543 443 3477899999999999999999998887 6778888876653
Q ss_pred cccccchHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+-.+++..+..+ .-|||+|++-- ..+ .... ..+-..++|-....+.+|+|.+|+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF------e~g-d~~y----K~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF------EEG-DDAY----KALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC------CCC-chHH----HHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3455666665543 47999999841 111 1112 2233445666666678999999999866
Q ss_pred CCcH----------------------HHHhccCcccccCCCCHHHHHHHHHHHHhhcccCC-cccH--H--HHHHHcCCC
Q 000950 1061 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL--E--GIANMADGY 1113 (1211)
Q Consensus 1061 ~Ld~----------------------aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~-dvdL--~--~LA~~T~Gy 1113 (1211)
.|.+ .+-.||+..+.|..++.++-.+|+..+.+...+.- +..+ + ..|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5542 23339999999999999999999999999877653 2222 2 234455577
Q ss_pred cHHHHHHHHHH
Q 000950 1114 SGSDLKNLCVT 1124 (1211)
Q Consensus 1114 SgaDL~~L~~~ 1124 (1211)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 77654444443
No 194
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.99 E-value=2.2e-09 Score=131.20 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=124.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
..+|++++|....++.+.+.+.. ++. ....|||+|++||||+++|+++.... +.+|+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 46899999998887777776542 111 12359999999999999999987665 4799999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc
Q 000950 982 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1049 (1211)
Q Consensus 982 s~-----~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~ 1049 (1211)
.. .||... ....++|+.|. .++||||||+.| +...+..+.++++.-...-.+-......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 233211 11123455443 489999999998 44445455444443211111111112346
Q ss_pred EEEEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhh----cccC-CcccHHHHHHHcC--
Q 000950 1050 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDLEGIANMAD-- 1111 (1211)
Q Consensus 1050 VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k----~~l~-~dvdL~~LA~~T~-- 1111 (1211)
+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ +++.++.+ .+.. ..+.-+.+..+..
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 8899988653 235566777874 47888888877764 44445443 2211 1233333333322
Q ss_pred -CCcHHHHHHHHHHHHhhhhH
Q 000950 1112 -GYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1112 -GySgaDL~~L~~~Aa~~Air 1131 (1211)
.-+.++|++++.+|+..+-.
T Consensus 419 WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 23668888988888765433
No 195
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.99 E-value=1.3e-09 Score=136.24 Aligned_cols=203 Identities=19% Similarity=0.238 Sum_probs=124.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 981 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~- 981 (1211)
.+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.+.. +.+|+.+||..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899998888887777665311 122459999999999999999998876 4799999998753
Q ss_pred ----cccccch----HHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 982 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 982 ----s~~~G~~----e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
+.++|.. .......|+.| ..++||||||+.| +...+..+.+++++-....-+.....+.++.+|
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2334421 00011123333 3589999999998 444455555554432211111111112368899
Q ss_pred EecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----c---CCcccHHHHHHHcCCCcH
Q 000950 1054 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L---ASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1054 aTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l---~~dvdL~~LA~~T~GySg 1115 (1211)
+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+.. . .++..+..|..+.=.-+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 998763 23444555566 467888899888854 5555554421 1 122224444444423467
Q ss_pred HHHHHHHHHHHhhh
Q 000950 1116 SDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~A 1129 (1211)
++|+++++.|+..+
T Consensus 541 reL~~~l~~~~~~~ 554 (638)
T PRK11388 541 FELRSVIENLALSS 554 (638)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999887644
No 196
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=123.72 Aligned_cols=143 Identities=27% Similarity=0.403 Sum_probs=99.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccchHHHHH----HHHHHHHhc-CC---cEEEEccchh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEGEKYVK----AVFSLASKI-AP---SVVFVDEVDS 1014 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~--s~~~G~~e~~I~----~lF~~A~k~-~P---sILfIDEID~ 1014 (1211)
.++||.||||||||+||+++|..++.+|+.+.|..-. ++.+|...-... ..|.....- -. +|+|+|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 4799999999999999999999999999999996422 222332111110 001000000 01 3999999986
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhccCCc-ccCCccEEEEEecC-----CCCCCcHHHHhccCcccccCCC-CHHHHHHH
Q 000950 1015 MLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKI 1087 (1211)
Q Consensus 1015 L~~~r~s~~~~e~l~~il~~LL~~ldgl~-~k~~~~VlVIaTTN-----~p~~Ld~aLlrRF~~~I~v~lP-d~eeR~eI 1087 (1211)
. ++..+..+..++++....+.+.. ..-+.+++||+|+| ....|++++++||...+.++.| +..+...+
T Consensus 124 a-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 124 A-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred C-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 5 45566677777777666676666 55567899999999 4567899999999888999999 55555555
Q ss_pred HHHHH
Q 000950 1088 IRVIL 1092 (1211)
Q Consensus 1088 Lk~lL 1092 (1211)
+....
T Consensus 199 ~~~~~ 203 (329)
T COG0714 199 LARVG 203 (329)
T ss_pred HHhCc
Confidence 54443
No 197
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.98 E-value=1.7e-09 Score=102.18 Aligned_cols=97 Identities=26% Similarity=0.439 Sum_probs=82.2
Q ss_pred chhhccccC--CCCceeEec-ceEEEeccccc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCC
Q 000950 94 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 169 (1211)
Q Consensus 94 W~~L~s~~~--~~p~~~i~~-~~~tvG~~~~c-~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k 169 (1211)
|+.|.++.. ..+.+.|.. ..++|||+..| |+.|.|..+|..||.|+...+++ ..+++..+.+|+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~~--~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGG--VVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCCC--EEEEECCCCCCe-EECCEECCC
Confidence 456666665 677899999 99999999999 99999999999999999765333 378888888998 799999999
Q ss_pred CceEEeeCCCEEEEccCCceeeEee
Q 000950 170 DSQVVLRGGDELVFSPSGKHSYIFQ 194 (1211)
Q Consensus 170 ~~~~~L~~Gdei~f~~~~~~ayifq 194 (1211)
+..+.|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 8899999999999987 45566554
No 198
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.9e-08 Score=118.27 Aligned_cols=168 Identities=20% Similarity=0.316 Sum_probs=115.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1018 (1211)
.+.++|||+.|.|||+|++|++++. +..++++....+...++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 34577777766655544332222233455555 4479999999998654
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHh
Q 000950 1019 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1019 r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~ 1093 (1211)
.. .++....+++.+... ++-+|+.+-..|.. +.+.+++||. .++.+.+|+.+.|..||+....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 255566666665421 34555655566654 4589999985 4788899999999999999877
Q ss_pred hcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1094 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1094 k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
..++. ++..+..+|..... +.++|..++....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 76555 45556777777653 5666666655444
No 199
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.2e-08 Score=118.97 Aligned_cols=188 Identities=16% Similarity=0.127 Sum_probs=119.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE--
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-- 975 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------~fi~I-- 975 (1211)
...|++++|++.+.+.|...+.. .+-+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999998763 233467999999999999999999998854 11100
Q ss_pred --ecc-----------ccc--ccccc---------chHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHH
Q 000950 976 --SMS-----------SIT--SKWFG---------EGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 1027 (1211)
Q Consensus 976 --~~s-----------eL~--s~~~G---------~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~e~ 1027 (1211)
.|. ++. ..-.+ -.-..++.+-.... .....||+|||+|.| +.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~~----- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----NR----- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----CH-----
Confidence 110 110 00000 01123344333222 223469999999998 21
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHH
Q 000950 1028 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1107 (1211)
Q Consensus 1028 l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA 1107 (1211)
...+.++..++.. +.+.++|..|+.+..+.+.+++|+ ..+.+++|+.++-..+++....... .++..+..++
T Consensus 156 --~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 1233345555442 234566666777888899999999 6999999999999999988543322 2234466778
Q ss_pred HHcCCCcHHHHHHHHHH
Q 000950 1108 NMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1108 ~~T~GySgaDL~~L~~~ 1124 (1211)
..+.|.....+ ++...
T Consensus 228 ~~s~G~pr~Al-~ll~~ 243 (351)
T PRK09112 228 QRSKGSVRKAL-LLLNY 243 (351)
T ss_pred HHcCCCHHHHH-HHHhc
Confidence 88877555444 44433
No 200
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.94 E-value=3e-08 Score=112.55 Aligned_cols=128 Identities=22% Similarity=0.312 Sum_probs=82.7
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCcHHHHhccC
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1071 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 1071 (1211)
|+||||||+|.| .-....++++.++. +-.++ +|.+||+ |+-++..++.|.
T Consensus 292 pGVLFIDEvHmL-----DIE~FsFlnrAlEs-----------e~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhh-----hHHHHHHHHHHhhc-----------ccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 789999999877 21222233332221 11344 4455554 788999999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000950 1072 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1150 (1211)
Q Consensus 1072 ~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~ 1150 (1211)
.+|...+.+.++..+|++...+.+.+. ++..++.|+..-..-|-+--.+|+.-|...|-++
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 678888899999999999998887665 4455677777665555444445544444433332
Q ss_pred CCCCCCccccccccHHHHHHHHHHh
Q 000950 1151 SPPLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1151 ~~~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
....+..+|++.|.+-+
T Consensus 416 --------g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 --------GSKRVEVEDVERAKELF 432 (450)
T ss_pred --------CCCeeehhHHHHHHHHH
Confidence 12468888988886654
No 201
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.92 E-value=3.2e-10 Score=114.05 Aligned_cols=119 Identities=27% Similarity=0.403 Sum_probs=66.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--ccccchH------HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGE------KYVKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s--~~~G~~e------~~I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
+|||+||||||||+||+.+|+.++.+++.+++..... +.+|... ......+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999999865221 1111100 000011111111 4689999999975
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCc--ccCCc------cEEEEEecCCCC----CCcHHHHhcc
Q 000950 1018 RRENPGEHEAMRKMKNEFMVNWDGLR--TKDKE------RVLVLAATNRPF----DLDEAVVRRL 1070 (1211)
Q Consensus 1018 ~r~s~~~~e~l~~il~~LL~~ldgl~--~k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1070 (1211)
++.....+..+++.-...+.... ..... .+.+|+|+|+.. .+++++++||
T Consensus 78 ---~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 11111111122211111100000 00111 389999999988 8999999998
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=6.1e-09 Score=100.72 Aligned_cols=127 Identities=33% Similarity=0.467 Sum_probs=81.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccchHHHHHHHHHHHHhcCCcEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1007 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~---fi~I~~seL~s~--------------~~G~~e~~I~~lF~~A~k~~PsIL 1007 (1211)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..|+...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999664 888887654321 112345567788999998888999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCCCcHHHHhccCcccccCCC
Q 000950 1008 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1008 fIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
||||++.+.... ............... .........+|+++|. ....+..+.+|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLL---LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHH---HHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884221 111100000000000 0012255788888886 444555566677766666543
No 203
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.8e-08 Score=117.96 Aligned_cols=181 Identities=19% Similarity=0.157 Sum_probs=116.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 973 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-----------i 973 (1211)
..++++|+|++.+++.|...+.. .+.+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 45789999999999999998763 23456799999999999999999999883210 0
Q ss_pred E---E-ec-----------cccccccc---cc--------hHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCc
Q 000950 974 N---I-SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1023 (1211)
Q Consensus 974 ~---I-~~-----------seL~s~~~---G~--------~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~ 1023 (1211)
. + .| +++.--.. +. .-..++.+-..+. ...+.||+|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 01 11100000 00 1123455444332 234679999999988 2
Q ss_pred hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccH
Q 000950 1024 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1103 (1211)
Q Consensus 1024 ~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL 1103 (1211)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.|+.|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 12333444444432 245677778888888999999998 68999999999998888775321 122223
Q ss_pred HHHHHHcCCCcHHHH
Q 000950 1104 EGIANMADGYSGSDL 1118 (1211)
Q Consensus 1104 ~~LA~~T~GySgaDL 1118 (1211)
..++..+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 567777776544333
No 204
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3e-09 Score=119.02 Aligned_cols=115 Identities=25% Similarity=0.417 Sum_probs=78.9
Q ss_pred Cccc-ccCcHHHHHHHHHHHHcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-c
Q 000950 907 TFDD-IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-K 983 (1211)
Q Consensus 907 sfdd-I~Gle~vk~~L~e~V~~pL~~pelf~k-~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~ 983 (1211)
-+++ ++|++..|+.|.-.+.....|-..... ..+.-.-.+|||.||+|+|||.||+.+|+.+++||..-++..|.. .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 3444 788888888776655433222111101 111122247999999999999999999999999999999988764 5
Q ss_pred cccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCC
Q 000950 984 WFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 984 ~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s 1021 (1211)
|+|+. |..+..+...| .+...+||||||||.+..+..+
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN 180 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSEN 180 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCC
Confidence 77775 44455555444 2345699999999999765544
No 205
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.89 E-value=1.2e-08 Score=126.29 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=94.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchH--HHHH-HHH--H--HHHhcCCcEEEEccchhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-AVF--S--LASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s~~~G~~e--~~I~-~lF--~--~A~k~~PsILfIDEID~L 1015 (1211)
.+|||.|+||||||++|++++..+. .+|+.+.+.......+|... ..+. ..| . ...+...++||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 5799999999999999999999875 46888886433333444321 0000 000 0 001122379999999998
Q ss_pred hcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCCC---CCcHHHHhccCcccccC-CCCHHHHHHHHH
Q 000950 1016 LGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREKIIR 1089 (1211)
Q Consensus 1016 ~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRF~~~I~v~-lPd~eeR~eILk 1089 (1211)
++..+..+..++++-...+ .|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.+|++
T Consensus 97 -----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~ 171 (589)
T TIGR02031 97 -----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVR 171 (589)
T ss_pred -----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHH
Confidence 4444445544544433222 243333346789999998865 78999999999766664 567888999999
Q ss_pred HHHh
Q 000950 1090 VILA 1093 (1211)
Q Consensus 1090 ~lL~ 1093 (1211)
.++.
T Consensus 172 ~~~~ 175 (589)
T TIGR02031 172 RERC 175 (589)
T ss_pred HHHH
Confidence 8763
No 206
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=1e-09 Score=118.21 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.|.+|.|++..|..|.-... + ..++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999987664 1 2589999999999999999998665
No 207
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=3.2e-08 Score=120.81 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=103.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEE---Eeccccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFIN---ISMSSITSKWF 985 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~---I~~seL~s~~~ 985 (1211)
.|.|++.++..|.-.+.-.... ....+...+...+|||+|+||||||++|+++++.+.. .|+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~--~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK--NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc--ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5789999887776554321100 0001111122347999999999999999999998743 2332 12222221111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC
Q 000950 986 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 986 G~---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p 1059 (1211)
.. .+..+ .+.+..| ..++++|||++.+ ++..+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 00 00000 0111222 3489999999998 3334444444443322211 34333345789999999975
Q ss_pred C-------------CCcHHHHhccCccc-ccCCCCHHHHHHHHHHHHhh
Q 000950 1060 F-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1060 ~-------------~Ld~aLlrRF~~~I-~v~lPd~eeR~eILk~lL~k 1094 (1211)
+ .|++++++||+..+ ..+.|+.+.+.+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 68999999998754 44789999999999987653
No 208
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.88 E-value=2.7e-08 Score=105.55 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=96.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~~ 998 (1211)
.+..+||+||+|+|||++|+++++.+... +..+... +.. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 44679999999999999999999987432 2222111 001 122455555655
Q ss_pred HHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCccc
Q 000950 999 ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1074 (1211)
Q Consensus 999 A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1074 (1211)
+... ...||+|||+|.|- . ...+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-----~-------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-----E-------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-----H-------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 5442 34699999999982 1 1233445555442 234666667777789999999998 589
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCC
Q 000950 1075 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1113 (1211)
Q Consensus 1075 ~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~Gy 1113 (1211)
.+..|+.++..++++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888776 33 344567777777664
No 209
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.87 E-value=3.7e-08 Score=122.26 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=42.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 971 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~ 971 (1211)
.-|++++|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999988887752 1379999999999999999999988543
No 210
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.5e-08 Score=114.07 Aligned_cols=95 Identities=32% Similarity=0.536 Sum_probs=71.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccch-HHHHHHHHHHH----HhcCCcEEEEccchhhhcC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~~~G~~-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~ 1018 (1211)
.+|||.||+|+|||.||+.+|+.+++||..++|..|.. .|+|+. |..+..++..| .+.+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999874 577765 56677777665 3446699999999999733
Q ss_pred CC---------CCchHHHHHHHHHhhhhhc
Q 000950 1019 RE---------NPGEHEAMRKMKNEFMVNW 1039 (1211)
Q Consensus 1019 r~---------s~~~~e~l~~il~~LL~~l 1039 (1211)
.. ..+.|..+.++++--++..
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnV 336 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNV 336 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcc
Confidence 21 1234555555555444444
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=8.4e-08 Score=106.68 Aligned_cols=192 Identities=14% Similarity=0.175 Sum_probs=115.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEE---ecc----ccc---cccccc-----h-HHHHHHHH----HHHHhcC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG-ANFINI---SMS----SIT---SKWFGE-----G-EKYVKAVF----SLASKIA 1003 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg-~~fi~I---~~s----eL~---s~~~G~-----~-e~~I~~lF----~~A~k~~ 1003 (1211)
.-++|+||+|+|||++++.+++.+. ..++.+ ++. ++. ...+|. . ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999875 222221 110 000 001111 1 11122221 2233456
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCC----cHHHHhccCcccccC
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRF~~~I~v~ 1077 (1211)
+.+|+|||++.+- .... ..+..+... .......+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 6899999999872 1111 111122111 1111122333333322 1111 134666887889999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 000950 1078 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1152 (1211)
Q Consensus 1078 lPd~eeR~eILk~lL~k~~-----l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~ 1152 (1211)
..+.++..+++...+...+ ..++..++.|+..+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 9999999999999887533 1245568889999999865 5999999988766553
Q ss_pred CCCCccccccccHHHHHHHHHHhc
Q 000950 1153 PLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1153 ~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
....|+.++++.++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 124699999999998765
No 212
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.6e-08 Score=112.29 Aligned_cols=85 Identities=22% Similarity=0.447 Sum_probs=58.9
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHH-HHHhhhhhccCCccc------CCccEEEEEec----CCCCCCcHHHHhccCc
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRK-MKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPR 1072 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~-il~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~ 1072 (1211)
.+||||||||.++.+....+. ...+. +...++-.+.|-.-. ....+++||+. ..|.+|-|.+.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999865542221 22221 333444444443211 23679999986 6789999999999999
Q ss_pred ccccCCCCHHHHHHHHH
Q 000950 1073 RLMVNLPDAPNREKIIR 1089 (1211)
Q Consensus 1073 ~I~v~lPd~eeR~eILk 1089 (1211)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988877764
No 213
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.86 E-value=2e-09 Score=113.17 Aligned_cols=128 Identities=20% Similarity=0.333 Sum_probs=78.6
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 983 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~---- 983 (1211)
|+|.+..++.+.+.+.... . .+..|||+|++||||+++|++|.+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~-~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------S-SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------T-STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------C-CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 3455566666666554211 1 22579999999999999999998866 579999999875432
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 000950 984 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 984 -~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
.||... .....+|+.|.. ++||||||+.| ++..|..+.+++++-....-+-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 333321 112356776666 99999999999 44556666555554333222222222358999999
Q ss_pred cCC
Q 000950 1056 TNR 1058 (1211)
Q Consensus 1056 TN~ 1058 (1211)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 985
No 214
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.3e-08 Score=114.93 Aligned_cols=180 Identities=14% Similarity=0.226 Sum_probs=117.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 976 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~----------fi~I~ 976 (1211)
.|++|+|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 2334689999999999999999999887321 11111
Q ss_pred ccccc---------ccc--------cc--------chHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHH
Q 000950 977 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEA 1027 (1211)
Q Consensus 977 ~seL~---------s~~--------~G--------~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~ 1027 (1211)
.+++. ++. .| -.-..++.+...+... ...|++||++|.| +.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~~----- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----NE----- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----CH-----
Confidence 12211 100 00 0012355555444432 3469999999988 21
Q ss_pred HHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHH
Q 000950 1028 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1107 (1211)
Q Consensus 1028 l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA 1107 (1211)
...+.|+..++.. + +.++|..|+.++.|.+++++|+ ..+.|..|+.++-.++++........ +.++..++
T Consensus 139 --~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 139 --AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred --HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2233444444432 2 3466777778899999999998 78999999999998888876432211 22346788
Q ss_pred HHcCCCcHHHHH
Q 000950 1108 NMADGYSGSDLK 1119 (1211)
Q Consensus 1108 ~~T~GySgaDL~ 1119 (1211)
....|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 888776555444
No 215
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.85 E-value=1.1e-08 Score=107.99 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=71.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~----~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~ 1014 (1211)
|...+||.||+|+|||.+|+++|..+.. +++.+||+++... +..+..+..++..+ .....+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999987651 11111222222111 111225999999999
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCccEEEEEecCCC
Q 000950 1015 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 1059 (1211)
Q Consensus 1015 L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-------~~~~VlVIaTTN~p 1059 (1211)
..+. .+......-..+.+.|+..+++-.-. +-.++++|+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8653 22222223334555566555432211 12579999999853
No 216
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.83 E-value=5.2e-08 Score=113.57 Aligned_cols=169 Identities=23% Similarity=0.318 Sum_probs=109.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec------c
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------S 978 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-~~fi~I~~------s 978 (1211)
..|.-++|++..+..|.-... ...-.|+||.|+.|||||+++|+|+.-+. ...+. .| .
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 456788999999888755322 11235799999999999999999998882 11111 11 0
Q ss_pred c--------------------------cccccccchHH----------HHHH---HHH--HHHhcCCcEEEEccchhhhc
Q 000950 979 S--------------------------ITSKWFGEGEK----------YVKA---VFS--LASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 979 e--------------------------L~s~~~G~~e~----------~I~~---lF~--~A~k~~PsILfIDEID~L~~ 1017 (1211)
+ +...-.|.++. .++. .|+ ..-+...+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--
Confidence 0 11111122222 1111 111 011112379999999887
Q ss_pred CCCCCchHHHHHHHHHhh--hhhccCCcccCCccEEEEEecCCC-CCCcHHHHhccCcccccCCC-CHHHHHHHHHHHHh
Q 000950 1018 RRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILA 1093 (1211)
Q Consensus 1018 ~r~s~~~~e~l~~il~~L--L~~ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRF~~~I~v~lP-d~eeR~eILk~lL~ 1093 (1211)
...-+..+..++..- ..+.+|+.-..+.++++|+|+|+. ..|-+.++.||...+.+..| +.++|.+|++..+.
T Consensus 157 ---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 157 ---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 223344444444442 445667766667899999999986 47889999999998888776 58999999988766
Q ss_pred h
Q 000950 1094 K 1094 (1211)
Q Consensus 1094 k 1094 (1211)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 217
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.7e-08 Score=114.81 Aligned_cols=149 Identities=20% Similarity=0.290 Sum_probs=97.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 969 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-------------------- 969 (1211)
++.+.+.....+...+.. .. +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665541 11 2223599999999999999999999986
Q ss_pred ----CcEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC
Q 000950 970 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1041 (1211)
Q Consensus 970 ----~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldg 1041 (1211)
..|+.++.++..... .....++.+-...... ..-||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777776644321 1233455544443333 347999999999831 223333333332
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHH
Q 000950 1042 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1089 (1211)
Q Consensus 1042 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk 1089 (1211)
...+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+....+
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 3367899999999999999999998 677887765544444333
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.81 E-value=4.4e-08 Score=119.04 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=101.5
Q ss_pred CCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhh
Q 000950 942 KPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 942 ~Pp~g-ILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~ 1016 (1211)
+|+.. +||+||||-|||+||+.||+++|+.+++||+++-.+. ......+..+...- ...+|..|+|||||--
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 34333 8999999999999999999999999999999884321 11112222221111 1246899999999842
Q ss_pred cCCCCCchHHHHHHHHHhhhh----hccCCcccC-------C---ccEEEEEecCCCCCCcHHHHh--ccCcccccCCCC
Q 000950 1017 GRRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD 1080 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL~----~ldgl~~k~-------~---~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd 1080 (1211)
...+.+ ++..++. +..|-.... + -.--|||.+|.... |+++. -|..++.|..|.
T Consensus 400 -------~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 400 -------PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred -------cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCC
Confidence 111222 2222221 111111100 0 12347788886443 45544 588899999999
Q ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1081 APNREKIIRVILAKEELAS-DVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1081 ~eeR~eILk~lL~k~~l~~-dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
..-..+-|+.++.++++.- ...+..|+..|++ ||+.-+++..
T Consensus 470 ~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQ 512 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQ 512 (877)
T ss_pred hhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHH
Confidence 8888888888888887752 2345556666655 5555444433
No 219
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.81 E-value=2.4e-09 Score=107.22 Aligned_cols=116 Identities=30% Similarity=0.421 Sum_probs=70.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-cccccch----HHHHHHHHHHHHhcC---CcEEEEccchhhh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EKYVKAVFSLASKIA---PSVVFVDEVDSML 1016 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s-eL~-s~~~G~~----e~~I~~lF~~A~k~~---PsILfIDEID~L~ 1016 (1211)
++||+|+||+|||++|+++|+.++..|..|.+. ++. ++..|.. +. ..|.. ... ..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNra- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRA- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccC-
Confidence 589999999999999999999999999998874 322 1222210 00 00000 011 269999999865
Q ss_pred cCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC-----CCcHHHHhccC
Q 000950 1017 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1071 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRF~ 1071 (1211)
++..|.++..++++....+++....-..+++||||.|+.+ .|+++++.||-
T Consensus 75 ----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 ----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5566778888888888888777666678899999999865 78899999983
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=98.81 E-value=4e-08 Score=124.56 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=119.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHHhcC------CcEEE
Q 000950 942 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 1008 (1211)
Q Consensus 942 ~Pp~gILL~G--PpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~------PsILf 1008 (1211)
-|.-+-++.| |++.|||++|+++|+++ +.+++.+|+++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3545567788 99999999999999998 56899999987432 235666655444332 25999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHH
Q 000950 1009 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1088 (1211)
Q Consensus 1009 IDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 1088 (1211)
|||+|.| +...+.++.+++ +. ....+.+|++||.++.+.+++++|+ ..+.|..|+.++-...+
T Consensus 636 IDEaD~L-----t~~AQnALLk~l-------Ee----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQALRRTM-------EM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHHHHHHh-------hC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 323333443333 32 2256889999999999999999998 78999999999999999
Q ss_pred HHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1089 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1089 k~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
+..+.++++. ++..+..|+..++|-....|..| +.++
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L-q~~~ 736 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAA 736 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 9988876654 56678999999998766665444 4433
No 221
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.81 E-value=1.6e-08 Score=120.71 Aligned_cols=202 Identities=18% Similarity=0.228 Sum_probs=120.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 983 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~-- 983 (1211)
.++.|.....+.+.+.+.. + ......++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 3455655666666554431 0 1122469999999999999999998776 578999999876332
Q ss_pred ---cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 984 ---WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 984 ---~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
.+|... ....+.|.. ...++||||||+.| +...+..+.+++++-.....+.....+.++.+|
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 122110 000111222 33589999999998 434455555554433222112111223468899
Q ss_pred EecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcCCCc
Q 000950 1054 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1054 aTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l----~~dvdL~~LA~~T~GyS 1114 (1211)
+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+.. . .++..+..|....=..+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 998764 34556676777 457888899888876 5555554421 1 12222444444443446
Q ss_pred HHHHHHHHHHHHhhhhH
Q 000950 1115 GSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1115 gaDL~~L~~~Aa~~Air 1131 (1211)
.++|+++++.|+..+-.
T Consensus 358 vreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 358 VRELENKVKRAVIMAEG 374 (445)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 78999999888865433
No 222
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.79 E-value=4.8e-08 Score=115.93 Aligned_cols=142 Identities=23% Similarity=0.278 Sum_probs=83.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc---
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS--- 978 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~-----fi~I~~s--- 978 (1211)
+++...+...+.+...+. ...+++|+||||||||++|+.+|..+.. . ++.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 175 NDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 445555666666655443 1257999999999999999999998842 1 2223221
Q ss_pred -cccccc----ccch--HHHHHHHHHHHHhc--CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC--------
Q 000950 979 -SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-------- 1041 (1211)
Q Consensus 979 -eL~s~~----~G~~--e~~I~~lF~~A~k~--~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldg-------- 1041 (1211)
++...+ .|.. ...+..++..|... .|.|||||||++-- ..+++.+++..++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhccccccccccc
Confidence 222111 1110 11233445566553 47999999998641 11222222222220
Q ss_pred ----------CcccCCccEEEEEecCCCC----CCcHHHHhccCcccccCC
Q 000950 1042 ----------LRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1042 ----------l~~k~~~~VlVIaTTN~p~----~Ld~aLlrRF~~~I~v~l 1078 (1211)
-.-..+.++.||||+|..+ .+|.+++|||. .|.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0012347899999999876 79999999994 455553
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.79 E-value=1.1e-07 Score=115.50 Aligned_cols=153 Identities=25% Similarity=0.311 Sum_probs=92.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 969 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---------------- 969 (1211)
..|+++.|+..+++.+.-.+. ...+++|.||||+|||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999888776654331 235799999999999999999986431
Q ss_pred ------------CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 970 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 970 ------------~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
.||...+++......+|.....-...+..|.. ++|||||++.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 22332222221111122111111223444433 89999999987 33344455544443322
Q ss_pred hc--cCCcccCCccEEEEEecCCC-----C------------------CCcHHHHhccCcccccCCCCHH
Q 000950 1038 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1038 ~l--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
.+ .+.....+.++.+|+++|+. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 11122223679999999863 1 4778889999988888766543
No 224
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.77 E-value=1.8e-07 Score=112.02 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=94.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 986 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~I~~s-eL~s~~~G 986 (1211)
.|.|.+++.+.+...+. ...++||+||||||||++|++++..++. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 36777888777766553 1247999999999999999999997742 44444432 11223344
Q ss_pred ch-HHHH--HHHHHHHHhc---CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 987 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 987 ~~-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.. -... .+-|...... ...+||+|||.++ ++..+..+..++++-.....+-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1223211111 1249999999865 44455555555555444443332222344555554 6422
Q ss_pred ---CCcHHHHhccCcccccCCCC-HHHHHHHHHHH
Q 000950 1061 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1091 (1211)
Q Consensus 1061 ---~Ld~aLlrRF~~~I~v~lPd-~eeR~eILk~l 1091 (1211)
...+++..||...+.++.|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24458999998788898887 45557777653
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.75 E-value=3.1e-07 Score=104.06 Aligned_cols=178 Identities=16% Similarity=0.226 Sum_probs=111.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccccc--------------c--ccchHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK--------------W--FGEGEKYVKAVFSLA 999 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~seL~s~--------------~--~G~~e~~I~~lF~~A 999 (1211)
.++||+|++|+|||++++.++... .+|++.+.++.--+. + .....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 257888887441100 0 011233444556777
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCCcHHHHhccCcccccC
Q 000950 1000 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~v~ 1077 (1211)
+...+.+|+|||++.++..... ..+.+++.+-.. ...-+-+++.+||-.- .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 8888999999999998643321 223333333222 2222345666666432 3355789999994 44554
Q ss_pred CCC-HHHHHHHHHHHHhhcccC--Ccc----cHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHH
Q 000950 1078 LPD-APNREKIIRVILAKEELA--SDV----DLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1133 (1211)
Q Consensus 1078 lPd-~eeR~eILk~lL~k~~l~--~dv----dL~~LA~~T~GySgaDL~~L~~~Aa~~Airrl 1133 (1211)
... -++...++..+-....+. +.. -...|-.+++|..| +|..|+..|+..|++.-
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 433 345566777766654443 222 23556677888665 89999999998888763
No 226
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.1e-07 Score=110.05 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=99.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~~ 998 (1211)
.+..+||+||+|+|||++|+++|+.+.+. ++.+.... .++ ...-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHHHH
Confidence 45679999999999999999999988442 22221110 000 0123456666555
Q ss_pred HHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCccc
Q 000950 999 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1074 (1211)
Q Consensus 999 A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I 1074 (1211)
+.. ....|++||++|.| + ....+.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-----~-------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-----N-------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhC-----C-------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 543 23569999999998 2 2234455555554 2357888899999999999999999 569
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1075 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1075 ~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
.|.+|+.++-.+.+..... ...+.+...++....|-.+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 9999999988877765431 1223334556666666444
No 227
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.73 E-value=2.1e-07 Score=107.33 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=51.7
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC------------CCCCcHHHHhccC
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1071 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF~ 1071 (1211)
|+||||||+|.| +-....+++++++. +-.++ ||.+||+ |+-++..|+.|+
T Consensus 279 pGVLFIDEvHmL-----DiEcFsfLnralEs-----------~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----DIECFSFLNRALES-----------ELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----BHHHHHHHHHHHTS-----------TT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----cHHHHHHHHHHhcC-----------CCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 789999999988 22222333333321 11344 4555553 678889999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcC
Q 000950 1072 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1111 (1211)
Q Consensus 1072 ~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~ 1111 (1211)
.+|...+++.++-.+|++..++.+.+. ++..++.|+....
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGV 381 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhh
Confidence 788999999999999999999987765 3333444444443
No 228
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.2e-07 Score=107.65 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=100.5
Q ss_pred CcccccC-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000950 907 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 971 (1211)
Q Consensus 907 sfddI~G-le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~-------------- 971 (1211)
.|+.|.| ++.+++.|...+.. .+.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899999887752 2345678999999999999999999887321
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 972 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 972 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
+..+... +.. ..-..++.+.+.+.. ....|++|||+|.+ + ....+.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----~-------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----T-------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----C-------HHHHHHHHH
Confidence 1111110 110 112345555444332 22469999999988 2 123344555
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHH
Q 000950 1038 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1090 (1211)
Q Consensus 1038 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ 1090 (1211)
.++. ++..+++|.+|+.+..+.+++++|+ ..+.+..|+.++-.++++.
T Consensus 133 ~LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 5554 2356777778888889999999998 7899999998887666653
No 229
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.71 E-value=8.6e-08 Score=115.44 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=120.3
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 983 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~- 983 (1211)
+.++.|.....+.+.+.+.. . ......+||+|++|||||++|++|.... +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45667776666666655531 0 1123469999999999999999998876 579999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 984 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 984 ----~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
.+|.... .....|.. ...+.|||||||.| +...+..+.+++++-.....+-......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1221100 00111222 23579999999998 33344444444433211111111111346789
Q ss_pred EEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhhcc----c----CCcccHHHHHHHcCCC
Q 000950 1053 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L----ASDVDLEGIANMADGY 1113 (1211)
Q Consensus 1053 IaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k~~----l----~~dvdL~~LA~~T~Gy 1113 (1211)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+.. . .++..+..|..+.=..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998753 24667777787 357788888777755 6666665421 1 1222344444444445
Q ss_pred cHHHHHHHHHHHHhhhh
Q 000950 1114 SGSDLKNLCVTAAHCPI 1130 (1211)
Q Consensus 1114 SgaDL~~L~~~Aa~~Ai 1130 (1211)
+.++|+++++.|+..+-
T Consensus 356 Nv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 356 NVRQLENTCRWLTVMAA 372 (469)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 67899999998886543
No 230
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=6.1e-07 Score=99.34 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=129.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEeccc---
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 979 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-g--~~fi~I~~se--- 979 (1211)
.+++.+.+.++....|+.+.. .....++|+|||+|+||-|.+.++.+++ | .+=..+....
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456777888888888877553 1123589999999999999999999887 3 2111111111
Q ss_pred ----------cccc--------cccch-HHHHHHHHHHHHhcCC---------cEEEEccchhhhcCCCCCchHHHHHHH
Q 000950 980 ----------ITSK--------WFGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 1031 (1211)
Q Consensus 980 ----------L~s~--------~~G~~-e~~I~~lF~~A~k~~P---------sILfIDEID~L~~~r~s~~~~e~l~~i 1031 (1211)
+.+. -.|.. .-.+..+..+..+.+| .|++|-|+|.| ....|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 12222 2234555554443332 49999999999 44567788888
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc
Q 000950 1032 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1110 (1211)
Q Consensus 1032 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T 1110 (1211)
++... ..+.+|..+|....+-+.+++|+ ..+.++.|+.++...++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 77654 45788888999999999999997 679999999999999999999998876 444577888888
Q ss_pred CCCcHHHHH
Q 000950 1111 DGYSGSDLK 1119 (1211)
Q Consensus 1111 ~GySgaDL~ 1119 (1211)
+|.-.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 876665543
No 231
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.65 E-value=1.9e-07 Score=111.92 Aligned_cols=176 Identities=20% Similarity=0.272 Sum_probs=105.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccchHHH-------HHHHHHHHHhcCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~-----~~G~~e~~-------I~~lF~~A~k~~PsILfI 1009 (1211)
..+||+|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 469999999999999999998765 579999999876332 22211000 01122222 3489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCCHH
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
||||.| +...+..+..+++.-.....+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333344443333332111111111123468899999754 24556666676 35788889888
Q ss_pred HHHH----HHHHHHhhccc----C----CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1083 NREK----IIRVILAKEEL----A----SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1083 eR~e----ILk~lL~k~~l----~----~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+|.+ +++.++.+... . ++..+..|....=..+.++|+++++.|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 8865 44555544211 1 2222334444433446789999999888654
No 232
>PRK15115 response regulator GlrR; Provisional
Probab=98.58 E-value=4.1e-07 Score=108.76 Aligned_cols=176 Identities=20% Similarity=0.280 Sum_probs=105.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHH-------HHHHHHHHHHhcCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK-------YVKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~-----~G~~e~-------~I~~lF~~A~k~~PsILfI 1009 (1211)
..++|+|++|||||++|+++.+.. +.+|+.++|..+.... +|.... ....+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999998875 5799999998763321 111100 0001122 223589999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCCHH
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
||||.| +...+..+.+++++-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 334444444444432211112111223478999998753 13334444455 35778889988
Q ss_pred HHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1083 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1083 eR~e----ILk~lL~k~~l--------~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+|.+ +++.++..... .++.-+..|....=..+.++|+++++.|+..+
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8854 45566554211 12333455555553446789999998887644
No 233
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=7.4e-07 Score=110.68 Aligned_cols=195 Identities=14% Similarity=0.197 Sum_probs=114.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee---cccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-IS---MSSI 980 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~-I~---~seL 980 (1211)
..+++++.+.++..+.+..++..... . ..+.+.++|+||||+|||++++.+|++++..++. ++ |...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35789999999999998887753111 0 2233459999999999999999999998765543 11 1100
Q ss_pred cc---------c---cccchHHHHHHHHHHHHh----------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 981 TS---------K---WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 981 ~s---------~---~~G~~e~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
.. . .+......++.++..|.. ....|||||||+.++.. . ......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHHHHHHHHHH--h
Confidence 00 0 011122344455555542 23569999999987532 1 12233332201 1
Q ss_pred ccCCcccCCccEEEEEecCCCC----------C----CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccC----
Q 000950 1039 WDGLRTKDKERVLVLAATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA---- 1098 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p~----------~----Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~---- 1098 (1211)
.+ ....+ +|+++|..+. . |.+++++ |. .+|.|++.+..+..+.|+.++..+...
T Consensus 224 ~e----~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 224 VS----IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hc----CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 11 11122 3333331111 1 3467775 44 478999999999888888888764221
Q ss_pred ----CcccHHHHHHHcCCCcHHHHHHH
Q 000950 1099 ----SDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1099 ----~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
.+..+..|+....|.....|..|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 22356778887777666665555
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=3.8e-06 Score=98.77 Aligned_cols=237 Identities=22% Similarity=0.260 Sum_probs=145.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccc-
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s~- 983 (1211)
.+.|.+..+..+++++..++.. ..+..+.+.|.||||||.+...+...+ ....++++|..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5788899999999988865542 233579999999999999988776555 335688998763211
Q ss_pred -----ccc--------c-hHHHHHHHHHHH-Hhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCC
Q 000950 984 -----WFG--------E-GEKYVKAVFSLA-SKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1047 (1211)
Q Consensus 984 -----~~G--------~-~e~~I~~lF~~A-~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~ 1047 (1211)
.++ . .+......|+.- ... .+-||++||+|.|+.... .++.+ +.+|..+ ..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeee-ehhcccC---Cc
Confidence 111 1 111222233322 222 367999999999973321 12222 2345544 34
Q ss_pred ccEEEEEecCCCCCCcHHHHh---c---cCcccccCCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHcCCCcHHHHH
Q 000950 1048 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSDLK 1119 (1211)
Q Consensus 1048 ~~VlVIaTTN~p~~Ld~aLlr---R---F~~~I~v~lPd~eeR~eILk~lL~k~~l~~d--vdL~~LA~~T~GySgaDL~ 1119 (1211)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+||+..+........ ..++..|....|.+| ||+
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655544333 2 3568999999999999999999988654432 346778888888887 555
Q ss_pred HH---HHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcc
Q 000950 1120 NL---CVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 1180 (1211)
Q Consensus 1120 ~L---~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s 1180 (1211)
.+ |+.|.. +.+.+... ......+.........+|.++++..++.++-.+-+
T Consensus 367 kaLdv~R~aiE-----I~E~e~r~-----~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAIE-----IAEIEKRK-----ILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHH-----HHHHHHhh-----ccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 33 444332 22222110 00111111112222367889999999888765543
No 235
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.4e-06 Score=100.78 Aligned_cols=164 Identities=13% Similarity=0.160 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000950 914 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 971 (1211)
Q Consensus 914 le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---------------------- 971 (1211)
+....+.|...+.. .+-+..+||+||.|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34556666665542 2345689999999999999999999887331
Q ss_pred --EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000950 972 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1045 (1211)
Q Consensus 972 --fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k 1045 (1211)
|+.+... .++.+ .-..++.+-..+... ...|++||++|.| + ....+.|+..++.
T Consensus 74 PD~~~i~p~--~~~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----~-------~~AaNaLLKtLEE---- 133 (325)
T PRK06871 74 PDFHILEPI--DNKDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----T-------EAAANALLKTLEE---- 133 (325)
T ss_pred CCEEEEccc--cCCCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-----C-------HHHHHHHHHHhcC----
Confidence 1222110 01111 234556655544432 3369999999998 2 2233455555554
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1046 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1046 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
++..+++|.+|+.++.|.+++++|+ ..+.|.+|+.++-.+.+..... .+......++..+.|-.+
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 3467899999999999999999999 6889999999888777765421 122234445555555443
No 236
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=8.8e-08 Score=110.47 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=99.4
Q ss_pred CCCCcchhhccccCCCCceeEecceEEEecccccceeecCCCCCccceEEEEe----------ec-CCcceEEEEEecCc
Q 000950 89 GSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------EN-GGPSGALLEITGGK 157 (1211)
Q Consensus 89 ~~~~pW~~L~s~~~~~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~----------~~-~g~~~a~le~~~~~ 157 (1211)
....||+||.-..---+++.....+||+||+..||+.+++..+|..|-++... .| +-...++|++.++|
T Consensus 41 ~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~n 120 (475)
T KOG0615|consen 41 ATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRN 120 (475)
T ss_pred ccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccC
Confidence 34568999998888899999999999999999999999999999999887655 12 22567999999999
Q ss_pred ceEEECCeeeCCCceEEeeCCCEEEEccCCceeeEeeccCccccCC
Q 000950 158 GEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAA 203 (1211)
Q Consensus 158 g~v~vng~~~~k~~~~~L~~Gdei~f~~~~~~ayifq~l~~~~~~~ 203 (1211)
|| +||-..++|+.+-.|++||||.++.+...+++|.+++-+...+
T Consensus 121 GT-~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~ 165 (475)
T KOG0615|consen 121 GT-FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKV 165 (475)
T ss_pred cc-cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccC
Confidence 99 8999999999999999999999999999999999885554333
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.54 E-value=2.3e-06 Score=104.48 Aligned_cols=228 Identities=20% Similarity=0.225 Sum_probs=141.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 980 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~~seL 980 (1211)
+...+.-..+|..++...+.. +. -...+.|.|-||||||.++..+-+++ .+.|+.||+-.|
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 445667777777777643332 01 11359999999999999999998765 478899998665
Q ss_pred ccc----------cccch------HHHHHHHHHHH-HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc
Q 000950 981 TSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1043 (1211)
Q Consensus 981 ~s~----------~~G~~------e~~I~~lF~~A-~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~ 1043 (1211)
.+. +.|+. -..+..-|... -+..++||+|||+|.|+.+.+ .++..| -..+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---------dVlYn~----fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---------DVLYNI----FDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---------HHHHHH----hcCC
Confidence 432 11211 11233333311 233468999999999975432 233332 2334
Q ss_pred ccCCccEEEEEecCCCCCCcH----HHHhccC-cccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH--
Q 000950 1044 TKDKERVLVLAATNRPFDLDE----AVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS-- 1116 (1211)
Q Consensus 1044 ~k~~~~VlVIaTTN~p~~Ld~----aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySga-- 1116 (1211)
...+.+++||+..|..+.... .+-+|++ .++.|.+.+.++..+|+...+..........++.+|+.....+|.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 445678899988887543322 2223554 478999999999999999999876544444556666666555553
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1117 DLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1117 DL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
.-..+|++|+..+-.+.. .. .......|++-|+.+|+.++..+.
T Consensus 616 raldic~RA~Eia~~~~~-~~------------------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-KG------------------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-cc------------------cccccceeehHHHHHHHHHHhhhh
Confidence 334667777755544421 00 111224688899999999876654
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.54 E-value=4.7e-07 Score=94.62 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000950 913 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 970 (1211)
Q Consensus 913 Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~---------------------- 970 (1211)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887763 234567999999999999999999988721
Q ss_pred -cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000950 971 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1045 (1211)
Q Consensus 971 -~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k 1045 (1211)
.++.+....-.. .-....++.+...+... ...|++|||+|.| +. ...+.|+..++.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~~-------~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----TE-------EAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------H-------HHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----hH-------HHHHHHHHHhcC----
Confidence 233333222100 01234556665555433 3469999999998 22 233444444443
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccCcccccCC
Q 000950 1046 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1046 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
.+.++++|.+|+.++.+.+.+++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3467899999999999999999998 5566554
No 239
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=4.6e-07 Score=102.14 Aligned_cols=122 Identities=18% Similarity=0.284 Sum_probs=71.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc----chHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G----~~e~~I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
.+++|+|++|||||+||.+|++++ +.+++.++..++...... ........++.... ...+|+|||+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e-- 190 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE-- 190 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC--
Confidence 579999999999999999999987 788888988776543211 11111122332222 3469999999642
Q ss_pred CCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-CC----CcHHHHhcc---CcccccCCCCH
Q 000950 1018 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPDA 1081 (1211)
Q Consensus 1018 ~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~aLlrRF---~~~I~v~lPd~ 1081 (1211)
..+...++.+..+++.... ....+|.|||.+ .. ++..+.+|+ ...|.+.-++.
T Consensus 191 -~~t~~~~~~l~~iin~r~~----------~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 -RDTEWAREKVYNIIDSRYR----------KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred -CCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1122233334444443321 123466667653 33 456777774 23455555553
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.9e-06 Score=100.02 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=98.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHH
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 997 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~------------------------fi~I~~seL~s~~~G~~e~~I~~lF~ 997 (1211)
+.+..+||+||+|+||+++|.++|..+-+. ++.+.... .... -.-..++.+-.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cccc--CCHHHHHHHHH
Confidence 345789999999999999999999887321 11121100 0000 12234555554
Q ss_pred HHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcc
Q 000950 998 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1073 (1211)
Q Consensus 998 ~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1073 (1211)
.+.. ....|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+.+++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 4433 334699999999982 2234555555554 3467899999999999999999999 47
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 000950 1074 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1117 (1211)
Q Consensus 1074 I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaD 1117 (1211)
+.|+.|+.++..+.+... .... ......++..+.|-.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHH
Confidence 899999988777766532 1222 233445666666654433
No 241
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.51 E-value=5e-07 Score=102.62 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=126.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
...|+.|++....++.+.+.... .+.. ...+||.|.+||||-.+|++..... ..||+.+||+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k----------~Aml--DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK----------LAML--DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH----------hhcc--CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 45688888887777776654321 1111 1249999999999999999986655 6899999997753
Q ss_pred -----cccccchH--HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 982 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 982 -----s~~~G~~e--~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
+..||... +--..+|+.|.. +.+|+|||..| ++..|..+.++++.-....-|-...-...|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 33455433 345678888877 89999999887 5555666666666544333333222346799999
Q ss_pred ecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH----HHHHHHhh----cccC-CcccHHHHHHHcC-CC--cH
Q 000950 1055 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDLEGIANMAD-GY--SG 1115 (1211)
Q Consensus 1055 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e----ILk~lL~k----~~l~-~dvdL~~LA~~T~-Gy--Sg 1115 (1211)
||..+ ..+-+.+.-|+ .++.+.+|...+|.. +.+.|+++ ..+. +..+.+.+-..+. +| +.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99653 23334444566 578889999888754 33444433 2222 2233233322222 23 45
Q ss_pred HHHHHHHHHHHh
Q 000950 1116 SDLKNLCVTAAH 1127 (1211)
Q Consensus 1116 aDL~~L~~~Aa~ 1127 (1211)
++|+|.+-+|+.
T Consensus 419 RqL~N~iyRA~s 430 (511)
T COG3283 419 RQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 242
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.50 E-value=4.1e-07 Score=109.25 Aligned_cols=202 Identities=21% Similarity=0.282 Sum_probs=114.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc--
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 984 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~-- 984 (1211)
.+.|.......+.+.+.. + ......++|.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-L-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-H-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555432 0 1122469999999999999999998775 5799999998763322
Q ss_pred ---ccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 985 ---FGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 985 ---~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
+|..... ....|. ....++||||||+.| +...+..+.+++.+-....-+-......++.+|+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 2211000 001122 223589999999998 3333333333333221111111111124678888
Q ss_pred ecCCC-------CCCcHHHHhccCcccccCCCCHHHHH----HHHHHHHhhccc--------CCcccHHHHHHHcCCCcH
Q 000950 1055 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKEEL--------ASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1055 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~lL~k~~l--------~~dvdL~~LA~~T~GySg 1115 (1211)
+|+.. ..+.+.+..|+. .+.+.+|...+|. .+++.++..... .++..+..|....=--+.
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 88753 245567777773 4667777766554 455555544211 122223444444323356
Q ss_pred HHHHHHHHHHHhhhhHH
Q 000950 1116 SDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~Airr 1132 (1211)
++|+++++.|+..+-..
T Consensus 354 reL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 354 RQLENLCRWLTVMASGD 370 (463)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 89999999988765443
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=2.9e-06 Score=97.93 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEec---------ccc
Q 000950 914 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NISM---------SSI 980 (1211)
Q Consensus 914 le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-i---~I~~---------seL 980 (1211)
+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- . .+.| +++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566666665542 23446799999999999999999998873210 0 0110 111
Q ss_pred cc-----cccc------chHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000950 981 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1045 (1211)
Q Consensus 981 ~s-----~~~G------~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k 1045 (1211)
.- ...| -.-..++.+.+.+...+ -.|++||++|.| + ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC----
Confidence 10 0001 11335566655554433 359999999998 2 2233445555444
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHH
Q 000950 1046 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1119 (1211)
Q Consensus 1046 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~ 1119 (1211)
+..++++|.+|+.++.|.+.+++|+ ..+.|..|+.++-...+... .. +..+...++..+.|-.+..+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3356788888899999999999999 67889999988777666532 22 223344666777766554443
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.46 E-value=2e-06 Score=100.01 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=47.7
Q ss_pred Ccc-cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000950 907 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 977 (1211)
Q Consensus 907 sfd-dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------~fi~I~~ 977 (1211)
-|+ ++.|+++.+.++.+++..... +.....+.++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 366 799999999999887764221 11223356899999999999999999999854 7777654
No 245
>PRK12377 putative replication protein; Provisional
Probab=98.46 E-value=8.8e-07 Score=98.81 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred hhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000950 894 LLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 968 (1211)
Q Consensus 894 ll~~vIp~~e~~~sfddI~Gl----e~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el- 968 (1211)
+....|++.....+|+++... ..+...+..++.. |.. ...+++|+||||||||+||.+|++++
T Consensus 59 ~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 59 LNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344556666667789886532 2233444444331 111 22589999999999999999999988
Q ss_pred --CCcEEEEeccccccccccch--HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 969 --GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 969 --g~~fi~I~~seL~s~~~G~~--e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
+..++.++.+++....-... ......++... ....+|+|||+...
T Consensus 127 ~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 127 AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 67788888777655321110 00111222222 34579999999654
No 246
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.45 E-value=6.1e-07 Score=113.63 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=100.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI 975 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~---k~----~i~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~fi~I 975 (1211)
.|.|.+.+|..|.-.+.-.......+. .+ .-.+...+|||.|+||||||.+|+++++.. |.++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 588999999888554432211100000 00 012233479999999999999999998865 2344444
Q ss_pred ecccccccccc--chHHH-HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccE
Q 000950 976 SMSSITSKWFG--EGEKY-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERV 1050 (1211)
Q Consensus 976 ~~seL~s~~~G--~~e~~-I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~V 1050 (1211)
.+..... ..+ ..+.. -.+.+..| ..++++|||++.| +...+..+..++++-...+ .|+...-+.++
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~ 601 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----HNESRLSLYEVMEQQTVTIAKAGIVATLKAET 601 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----CHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence 4433211 000 00000 01112222 2389999999998 3333444444443322211 24434445789
Q ss_pred EEEEecCCC-------------CCCcHHHHhccCccc-ccCCCCHHHHHHHHHHHHh
Q 000950 1051 LVLAATNRP-------------FDLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1051 lVIaTTN~p-------------~~Ld~aLlrRF~~~I-~v~lPd~eeR~eILk~lL~ 1093 (1211)
.||||+|+. -.|++.+++||+.++ .++.|+.+.=..|.++++.
T Consensus 602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 999999984 257799999998764 4466776666666666553
No 247
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.44 E-value=3.5e-06 Score=102.36 Aligned_cols=153 Identities=25% Similarity=0.296 Sum_probs=90.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccccc-
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS- 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~--fi~I~~seL~s- 982 (1211)
..|.++.|...+++.+.-.+ ....+++|+||+|+|||+|++.++..+... -..+.+..+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888777666543211 133579999999999999999998655210 00111111100
Q ss_pred -------------------------ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 983 -------------------------KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 983 -------------------------~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
..+|.....-...+..|.. ++|||||++.+ +...++.++..+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0111111112234555554 89999999876 33344445544443333
Q ss_pred hccC--CcccCCccEEEEEecCCCC---------------------CCcHHHHhccCcccccCCCCHH
Q 000950 1038 NWDG--LRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1038 ~ldg--l~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
.+.. .....+.++.+|+|+|+.. .+...++.||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 2222 1222346799999998752 4777899999998999888644
No 248
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.6e-06 Score=99.13 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=89.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------------------EEEeccccc---------------
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSIT--------------- 981 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------------------------i~I~~seL~--------------- 981 (1211)
+.+..+||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3457899999999999999999998884421 111111000
Q ss_pred ---ccc-----ccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCcc
Q 000950 982 ---SKW-----FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1049 (1211)
Q Consensus 982 ---s~~-----~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~ 1049 (1211)
++. -.-.-..++.+...+... ...|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 000 001123455555444322 23599999999982 2334555666554 3467
Q ss_pred EEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHH
Q 000950 1050 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1091 (1211)
Q Consensus 1050 VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~l 1091 (1211)
+++|.+|++++.|.+++++|+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999999888887653
No 249
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.42 E-value=1.9e-06 Score=107.19 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=40.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
..|+++.|++++++.|...+.. .+++||+||||||||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5789999999999998886652 13799999999999999999998764
No 250
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.38 E-value=2.4e-06 Score=101.88 Aligned_cols=175 Identities=18% Similarity=0.258 Sum_probs=100.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHHH-------HHHHHHHHHhcCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~-----~G~~e~~-------I~~lF~~A~k~~PsILfI 1009 (1211)
..++|+|.+||||+++|+++.... +.+|+.++|..+.... +|..... ....|. ...+++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 569999999999999999998665 5799999998754322 1211000 001122 234689999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCCHH
Q 000950 1010 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1010 DEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
|||+.| +...+..+..++..-.....+.......++.+|++|+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333344333333332221222111123467888888653 23444555565 35778888888
Q ss_pred HHHH----HHHHHHhhccc--------CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000950 1083 NREK----IIRVILAKEEL--------ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1083 eR~e----ILk~lL~k~~l--------~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
+|.+ +++.++.+... .++..+..|....=.-+.++|+++++.|+..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7755 55555554211 1122233333333233557777777776654
No 251
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.37 E-value=5.9e-07 Score=106.32 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=70.8
Q ss_pred CceeEecceEEEecccccceeecCCC--CCccceEEEEeecCCcceEEEEEecCcceEEEC--CeeeCCCceEEeeCCCE
Q 000950 105 SHLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDE 180 (1211)
Q Consensus 105 p~~~i~~~~~tvG~~~~c~~~l~d~~--~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vn--g~~~~k~~~~~L~~Gde 180 (1211)
..+.+....++|||+..||+.|.|+. +|..||+|... +|. .+|++.++||| +|| |..+.++..+.|+.||+
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~ 91 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDR 91 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCE
Confidence 36677788999999999999999999 99999999975 343 78899998999 899 99999999999999999
Q ss_pred EEEccCCceee
Q 000950 181 LVFSPSGKHSY 191 (1211)
Q Consensus 181 i~f~~~~~~ay 191 (1211)
|.|+...-..+
T Consensus 92 I~iG~~~lrv~ 102 (396)
T TIGR03354 92 LRLGDYEIRVS 102 (396)
T ss_pred EEECCEEEEEE
Confidence 99987543333
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.36 E-value=3.2e-06 Score=94.16 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=67.2
Q ss_pred hhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 000950 894 LLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 968 (1211)
Q Consensus 894 ll~~vIp~~e~~~sfddI~Gl-e~---vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el- 968 (1211)
+....|++.....+|+++... +. +...+.+++.. |. ....+++|+|++|||||+|+.+||+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 334556665557789986533 22 33333333321 11 112489999999999999999999988
Q ss_pred --CCcEEEEeccccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 969 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 969 --g~~fi~I~~seL~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
+..++.++.+++....... .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888887776532221 1111223333332 4689999999875
No 253
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1e-05 Score=93.31 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 000950 914 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 971 (1211)
Q Consensus 914 le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---------------------- 971 (1211)
+....+.+...+.. .+.+..+||+||.|+||+.+|+++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 35566667665542 3345789999999999999999999887321
Q ss_pred -EEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC
Q 000950 972 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1046 (1211)
Q Consensus 972 -fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~ 1046 (1211)
|+.+.... .++.+ .-..++.+-..+... ...|++||++|.| + ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----N-------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----C-------HHHHHHHHHHhcC----C
Confidence 22222110 01111 123455554444332 2469999999998 2 2234555555554 3
Q ss_pred CccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHH
Q 000950 1047 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1090 (1211)
Q Consensus 1047 ~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ 1090 (1211)
+.++++|.+|+.++.|.+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 6889999998887776654
No 254
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-05 Score=102.34 Aligned_cols=127 Identities=23% Similarity=0.320 Sum_probs=88.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~--Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~--- 981 (1211)
.|+|++++...+-+.|.. ++.++.+ |.-.+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~--------sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRR--------SRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHh--------hhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 588999999999998875 2334444 55669999999999999999999988 4578999998632
Q ss_pred ---cc---cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccC-------Cc
Q 000950 982 ---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KE 1048 (1211)
Q Consensus 982 ---s~---~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~-------~~ 1048 (1211)
+. |.|.. ...++.+..++.+-+||+|||||.- ...+++.|+..++.....+ -.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 22 34432 3446666677777799999999864 1234444444444332221 25
Q ss_pred cEEEEEecCC
Q 000950 1049 RVLVLAATNR 1058 (1211)
Q Consensus 1049 ~VlVIaTTN~ 1058 (1211)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 7899999764
No 255
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.7e-07 Score=109.03 Aligned_cols=47 Identities=40% Similarity=0.628 Sum_probs=39.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..+|.|+.|++..|..+.-... + .+++|++|||||||||||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhccc
Confidence 3479999999999999987554 2 368999999999999999988543
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.31 E-value=4e-07 Score=92.22 Aligned_cols=106 Identities=24% Similarity=0.479 Sum_probs=63.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s 1021 (1211)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ..++|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4599999999999999999998774 466777776533 3344444 5699999999998 2
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCC
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd 1080 (1211)
...+..+...+. .. ...++.+|+++..+ ..+++.+..||. .+.+.+|+
T Consensus 83 ~~~Q~~L~~~l~----~~------~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRRLLDLLK----RQ------ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHHHHHHHH----HC------TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHHHHHHHH----hc------CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 222222222222 11 12455777766432 245667777774 33444443
No 257
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.27 E-value=1.8e-06 Score=92.48 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=92.5
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-cc--------
Q 000950 912 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SS-------- 979 (1211)
Q Consensus 912 ~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~---~fi~I~~-se-------- 979 (1211)
.|.++..+.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.- ..+.+++ ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4556666666665541 12357999999999999999999998832 1222221 11
Q ss_pred c-------------ccc-------------cccchHHHHHHHHHHHHhcC-CcEEEEccchhhh-cCCCCCchHHHHHHH
Q 000950 980 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 1031 (1211)
Q Consensus 980 L-------------~s~-------------~~G~~e~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~s~~~~e~l~~i 1031 (1211)
+ ... ........+..++....+.. ..||+|||++.+. .... ... +
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~---~~~----~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE---DKD----F 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT---THH----H
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc---hHH----H
Confidence 0 000 00112345566666665543 4899999999996 2221 122 2
Q ss_pred HHhhhhhccCCcccCCccEEEEEecCCCC------CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc-c-CCcccH
Q 000950 1032 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1103 (1211)
Q Consensus 1032 l~~LL~~ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~-l-~~dvdL 1103 (1211)
+..+...++..... .++.+|.++.... .-...+..|+.. +.++..+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 22233333322211 3344443333211 111234456755 99999999999999999877651 1 266778
Q ss_pred HHHHHHcCCCcH
Q 000950 1104 EGIANMADGYSG 1115 (1211)
Q Consensus 1104 ~~LA~~T~GySg 1115 (1211)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 889999988643
No 258
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.25 E-value=2.7e-06 Score=96.13 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=105.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 978 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~------fi~I~~s 978 (1211)
...++++++.+++...+.++... .+- .++|+|||||||||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 34667889999998888886431 111 389999999999999999999988543 1223333
Q ss_pred ccccccccchHHHHHHHHHHHHh-------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 979 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
+-.+ .+. ...--..|..++. ..+..+++||.|.+ ....|.++++++..+. .++.
T Consensus 103 d~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----T~~AQnALRRviek~t-----------~n~r 163 (360)
T KOG0990|consen 103 DDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----TRDAQNALRRVIEKYT-----------ANTR 163 (360)
T ss_pred CccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh-----hHHHHHHHHHHHHHhc-----------cceE
Confidence 3111 111 1122234544442 25679999999998 3345667777665543 4567
Q ss_pred EEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc
Q 000950 1052 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1096 (1211)
Q Consensus 1052 VIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~ 1096 (1211)
+...+|.+..+.+++++|| ..+.+...+...-...+.+++..+.
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 7777899999999999998 4567777776666666666665443
No 259
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.24 E-value=1.7e-06 Score=84.96 Aligned_cols=57 Identities=30% Similarity=0.490 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccCC-CCeEEEEcChhhhhccC--------hhhHHHHHHHHhcCCC---CEEEEeeccCCC
Q 000950 649 AINELFEVALNESKS-SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQLD 708 (1211)
Q Consensus 649 ~~~~l~evl~sesk~-~P~Ilf~~die~~l~~~--------~~~~~~i~s~L~~L~g---~VvVIgs~~~~d 708 (1211)
.+..+|+-+.. . .|.||||||+|.+.... ....+.+...|++... +++||+++|+.+
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence 34445555444 3 49999999999977765 6777788888888865 699999999533
No 260
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.23 E-value=7.3e-06 Score=101.42 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=93.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccch--HHHH--------HHHHHHHHhcCCcEEEEccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1012 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s~~~G~~--e~~I--------~~lF~~A~k~~PsILfIDEI 1012 (1211)
.||||.|++|+||++++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|.+ +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999884 5888877654333444432 1111 123333333 89999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC---CCCcHHHHhccCcccccCCCCHHH
Q 000950 1013 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1083 (1211)
Q Consensus 1013 D~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~ee 1083 (1211)
..+ .+...+.+...+++-...+ ++....-+.++++|++.|.. ..|.+.++.||+..+.+..|+..+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 877 4455666666776666666 66666667889999985432 458899999999999998887654
No 261
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.21 E-value=1.6e-05 Score=88.68 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=58.8
Q ss_pred CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-------------CCCCcHHHHhc
Q 000950 1003 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1069 (1211)
Q Consensus 1003 ~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1069 (1211)
-|+||||||++.| .-....++.+ .+.+ . -.-+||++||+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----DiEcFTyL~k-------alES----~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----DIECFTYLHK-------ALES----P-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----hhHHHHHHHH-------HhcC----C-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999877 1111112222 2221 1 12355666654 67888999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcC
Q 000950 1070 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1111 (1211)
Q Consensus 1070 F~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~ 1111 (1211)
+ .+|...+.+.++-++|++...+.+++. ++..+..|+....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 677777888999999999988887765 3444566665543
No 262
>PRK08181 transposase; Validated
Probab=98.20 E-value=3.8e-06 Score=94.81 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
.+++|+||+|||||+||.+|++++ |..++.++..++....... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999765 7788888887766543211 011122333332 24579999999876
No 263
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.16 E-value=3.4e-05 Score=86.37 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=83.4
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec---------C--CCCCCcHHHHhccCc
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT---------N--RPFDLDEAVVRRLPR 1072 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT---------N--~p~~Ld~aLlrRF~~ 1072 (1211)
|+||||||++.| .-....++++.++. +-.++++++|. | .|+-++-.++.|. .
T Consensus 289 pGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-L 351 (454)
T ss_pred cceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-h
Confidence 789999999877 22223333333322 11345555442 1 3678888999998 6
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCC
Q 000950 1073 RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRAS 1151 (1211)
Q Consensus 1073 ~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~ 1151 (1211)
+|.-.+.+.++..+||+..+..+.+. .+..++.|.......+-+--.+|+..|...+.+|-
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------------------ 413 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------------------ 413 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc------------------
Confidence 77888889999999999999887654 33334555555555555555677777776666651
Q ss_pred CCCCCccccccccHHHHHHHHHHh
Q 000950 1152 PPLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1152 ~~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
...+..+|++.+.+-+
T Consensus 414 --------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 414 --------GKVVEVDDIERVYRLF 429 (454)
T ss_pred --------CceeehhHHHHHHHHH
Confidence 1457778888876643
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=9.9e-06 Score=93.87 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=85.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccchHHHH
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 992 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------------------~fi~I~~seL---~s~~-~G~~e~~I 992 (1211)
+-+..+||+||+|+|||++|+.+|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999988732 1333332110 0000 00123456
Q ss_pred HHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh
Q 000950 993 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1068 (1211)
Q Consensus 993 ~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1068 (1211)
+.+.+.+... ...|++||+++.| +... .+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~~a-------~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----NLQA-------ANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----CHHH-------HHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666542 2469999999988 2222 223333333321 235667788888899999999
Q ss_pred ccCcccccCCCCHHHHHHHHHH
Q 000950 1069 RLPRRLMVNLPDAPNREKIIRV 1090 (1211)
Q Consensus 1069 RF~~~I~v~lPd~eeR~eILk~ 1090 (1211)
|+ ..+.|+.|+.++..+.++.
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 6888999998887776654
No 265
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.14 E-value=4.3e-05 Score=93.51 Aligned_cols=194 Identities=19% Similarity=0.271 Sum_probs=112.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 981 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~---- 981 (1211)
.+.+|+.-..+..++++..+...+. . ..+.+-+||+||+|||||++++.+|+++++.+++...+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4667888887777788777763111 1 12234588999999999999999999999988875432210
Q ss_pred ---cccccc---hH---HHHHHHHH-----HHHh-----------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhh
Q 000950 982 ---SKWFGE---GE---KYVKAVFS-----LASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1036 (1211)
Q Consensus 982 ---s~~~G~---~e---~~I~~lF~-----~A~k-----------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL 1036 (1211)
..+.+. .+ ..+. .|. .++. ..+.||+|+|+-.++.. . ....+.++.+++
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~----~-~~~f~~~L~~~l 160 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR----D-TSRFREALRQYL 160 (519)
T ss_pred cccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccch----h-HHHHHHHHHHHH
Confidence 011111 00 0111 121 1111 23579999999765421 1 144445555554
Q ss_pred hhccCCcccCCc-cEEEEEec-------CCC--------CCCcHHHHhcc-CcccccCCCCHHHHHHHHHHHHhhc----
Q 000950 1037 VNWDGLRTKDKE-RVLVLAAT-------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1095 (1211)
Q Consensus 1037 ~~ldgl~~k~~~-~VlVIaTT-------N~p--------~~Ld~aLlrRF-~~~I~v~lPd~eeR~eILk~lL~k~---- 1095 (1211)
.. ... ++++|.+- +.. ..+.+.++... -.+|.|.+-...--.+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 113 67777771 111 13556666622 2568888888877777777777765
Q ss_pred ----ccCCcc-cHHHHHHHcCCCcHHHHHHH
Q 000950 1096 ----ELASDV-DLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1096 ----~l~~dv-dL~~LA~~T~GySgaDL~~L 1121 (1211)
...... .++.|+..+.|.-...|.+|
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 111112 37788888777555555444
No 266
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=8.8e-06 Score=81.41 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
+-++|+||.|+|||++++.+++.+. -+++.+++.+.........+ +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998886 77888887764332111111 222232222225689999999987
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.07 E-value=8.8e-06 Score=94.37 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=66.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---hHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~---~e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1018 (1211)
.+++|+||+|||||+||.+||+++ |..++.++..++....... ........+.... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888889887765543110 0001111122222 34799999997652
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCC----CcHHHHhcc
Q 000950 1019 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 1070 (1211)
Q Consensus 1019 r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~----Ld~aLlrRF 1070 (1211)
.+....+.+..+++..+.. . --+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~---------~-k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR---------Q-KKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC---------C-CCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222334444455444321 1 235556654 333 445666665
No 268
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.05 E-value=9e-06 Score=98.98 Aligned_cols=176 Identities=24% Similarity=0.303 Sum_probs=110.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccc-----ccccccchHHHHHHHHHHHHh-----cCCcEEEEccch
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEVD 1013 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el--g~~fi~I~~seL-----~s~~~G~~e~~I~~lF~~A~k-----~~PsILfIDEID 1013 (1211)
.+||.|.+||||-.|+++|.... ..||+.+||..+ .+.+||.........+..-++ ...+.+|+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 59999999999999999997665 578999999764 344555432222221111111 123799999999
Q ss_pred hhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHHH
Q 000950 1014 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK 1086 (1211)
Q Consensus 1014 ~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~e 1086 (1211)
.| +-..|..+.+++++-...--|... .+..|.||+||++. ..+-+.+.-|+ ..+.|.+|...+|..
T Consensus 418 d~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~d 490 (606)
T COG3284 418 DM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERSD 490 (606)
T ss_pred hc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhcccc
Confidence 87 445677777888777666555444 55789999999864 12333333355 356778888777754
Q ss_pred ---HHHHHHhhcccC-CcccHHHHHHHcC---CCcHHHHHHHHHHHHhh
Q 000950 1087 ---IIRVILAKEELA-SDVDLEGIANMAD---GYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1087 ---ILk~lL~k~~l~-~dvdL~~LA~~T~---GySgaDL~~L~~~Aa~~ 1128 (1211)
+|..++.++.-. -..+-+.++.... --+.++|.++++.++..
T Consensus 491 ~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 491 RIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 555555553321 2223333333322 22567888888877643
No 269
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=2.5e-05 Score=77.13 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEeccccccc--------------cc--cchHHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 1000 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el--------g~~fi~I~~seL~s~--------------~~--G~~e~~I~~lF~~A~ 1000 (1211)
+.++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 778888887553210 00 122334444555555
Q ss_pred hcCCcEEEEccchhhh
Q 000950 1001 KIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 1001 k~~PsILfIDEID~L~ 1016 (1211)
+....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999984
No 270
>PRK06526 transposase; Provisional
Probab=98.01 E-value=8.7e-06 Score=91.25 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
..+++|+||||||||+||.+|+.++ |..++.+++.++....... ....+...+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3689999999999999999998876 6777667666654432110 001112222221 24689999999876
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=2.8e-05 Score=89.50 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
.+|++|+||+|+|||+|+.|||+++ |.++..+..++++...-... .......+.... ...+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888877654422110 011222333222 3579999999653
No 272
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.99 E-value=6.4e-06 Score=87.59 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~ 1014 (1211)
...+++|+||+|+|||+||.+|++++ |.++..++.++|+....... .......+.... ...+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 34689999999999999999999877 88899999888765432211 111222333333 347999999964
No 273
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.98 E-value=5.2e-05 Score=94.49 Aligned_cols=171 Identities=29% Similarity=0.360 Sum_probs=101.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eeccc---cc----
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---IT---- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~-I~~se---L~---- 981 (1211)
.|.|++.+|+.|.-.+.-... .....+...+.--+|||.|.||||||.|.+.+++.+-..++. -.++. |.
T Consensus 287 sIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 578999999988654432111 111111112222469999999999999999999887433221 11111 11
Q ss_pred -----cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc--CCcccCCccEEEEE
Q 000950 982 -----SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLA 1054 (1211)
Q Consensus 982 -----s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld--gl~~k~~~~VlVIa 1054 (1211)
+.|.=+. +.+-+| .++|..|||+|.+ +.....++...+++-...+. |+...-+.+.-|+|
T Consensus 365 rd~~tge~~Lea-----GALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 365 RDKVTGEWVLEA-----GALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EccCCCeEEEeC-----CEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 1111110 111122 3589999999987 33344445455544443332 33334456778899
Q ss_pred ecCCCC-------------CCcHHHHhccCccccc-CCCCHHHHHHHHHHHHhhc
Q 000950 1055 ATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1055 TTN~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~lL~k~ 1095 (1211)
|+|+.. .|++.+++||+.++.+ ..|+.+.-..+.++.+...
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 998754 5778999999976555 5577776677777766654
No 274
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.97 E-value=1.3e-05 Score=100.40 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCCceeE---ecceEEEecccccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-cceEEECCee-----eC
Q 000950 103 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 168 (1211)
Q Consensus 103 ~~p~~~i---~~~~~tvG~~~~c~~-----~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~-~g~v~vng~~-----~~ 168 (1211)
+...|+| .+.-|+|||..+||+ .++|+.+|..|++|... +|. .+|||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 4466888 778899999999997 99999999999999986 333 78888876 899 798888 55
Q ss_pred CCceEEeeCCCEEEEccCCceee
Q 000950 169 KDSQVVLRGGDELVFSPSGKHSY 191 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~~~ay 191 (1211)
.|..+.|+.||+|.|+...|.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67789999999999999877655
No 275
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.94 E-value=3.7e-05 Score=86.28 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=49.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHH-HH-HHHHHHHHhcCCcEEEEccchhh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~-~I-~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
+.+++|+||||+|||+||.||++++ |..++.+..++++...-..... .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999888 7899999998877653221110 11 1111111 23479999999764
No 276
>PF05729 NACHT: NACHT domain
Probab=97.92 E-value=6.6e-05 Score=76.44 Aligned_cols=140 Identities=16% Similarity=0.256 Sum_probs=74.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecccccccc------------ccchHHHHHH-HHHHHHhcC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1003 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg--------~~-fi~I~~seL~s~~------------~G~~e~~I~~-lF~~A~k~~ 1003 (1211)
-++|+|++|+|||++++.++..+. .. ++.+.+.+..... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987761 12 2334433322110 0011111121 122334445
Q ss_pred CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccC--cccccCCCCH
Q 000950 1004 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1081 (1211)
Q Consensus 1004 PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~--~~I~v~lPd~ 1081 (1211)
..+|+||.+|.+...... ........++..++.. ... .++.+|.|+.+ ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~--~~~----~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQ--ALP----PGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhh--ccC----CCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532211 0111222333333322 011 22344444432 22211 334332 3578888899
Q ss_pred HHHHHHHHHHHhh
Q 000950 1082 PNREKIIRVILAK 1094 (1211)
Q Consensus 1082 eeR~eILk~lL~k 1094 (1211)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998763
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=97.92 E-value=2.5e-05 Score=87.77 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
..+++|+||+|+|||+||.+|+..+ |..+..+++.++...+... ....+..+|... ...+.+|+|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999998764 7778788877665332111 111233444433 235689999999865
No 278
>PRK06921 hypothetical protein; Provisional
Probab=97.89 E-value=2.4e-05 Score=88.29 Aligned_cols=67 Identities=25% Similarity=0.356 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~ 1014 (1211)
.+++|+|++|+|||+|+.+||+++ +..++.+...+++....... ......+... ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 579999999999999999999876 56777887666543321110 1111111211 2457999999954
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.89 E-value=5.8e-05 Score=76.19 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=48.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------------cc--cchHHHHHHHHHHH
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WF--GEGEKYVKAVFSLA 999 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~----------------------~~--G~~e~~I~~lF~~A 999 (1211)
++|+||||+|||+++..++..+ +.+++.+++...... .. .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 567777766432210 00 01111222345566
Q ss_pred HhcCCcEEEEccchhhhc
Q 000950 1000 SKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L~~ 1017 (1211)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 280
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5e-05 Score=87.88 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC--hhhHHHHHHHHhcC-------CCCEEEEeeccCCCCccccCCCCCc
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGL 719 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--~~~~~~i~s~L~~L-------~g~VvVIgs~~~~d~~k~k~~~~~~ 719 (1211)
.|..||.-... | ..-++||||+.|-+||.. +.+-....+.|.+| +..+|++-|+||+..
T Consensus 430 kiH~lFDWakk-S-~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd---------- 497 (630)
T KOG0742|consen 430 KIHKLFDWAKK-S-RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------- 497 (630)
T ss_pred HHHHHHHHHhh-c-ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc----------
Confidence 34555555432 1 367999999999999943 44445678888888 457888889996544
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchhh
Q 000950 720 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 797 (1211)
Q Consensus 720 ~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~Il 797 (1211)
+| -+++.+|.-+|++++|..|...+ ...-.-|+-.|+.++.- -+
T Consensus 498 --------------------lD-------------sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~ 543 (630)
T KOG0742|consen 498 --------------------LD-------------SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GK 543 (630)
T ss_pred --------------------hh-------------HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-ch
Confidence 33 46777788899999999998866 33334456666655531 11
Q ss_pred HHHHHh------hhCC-CCcccchhhhcccCCCCHHHHHHHHhh
Q 000950 798 SIRSVL------SRNG-LDCVDLESLCIKDQTLTTEGVEKIVGW 834 (1211)
Q Consensus 798 ~IhT~l------~~~~-l~d~dL~~LA~~tkg~sgadI~~Lv~~ 834 (1211)
.-|-.. .--+ +.+.-+.+.|.+|.||+|-+|..|+-.
T Consensus 544 ~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 544 WSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 111111 1111 234567889999999999999998754
No 281
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.86 E-value=2.2e-05 Score=65.91 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.1
Q ss_pred EEEeccc-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeee
Q 000950 114 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 167 (1211)
Q Consensus 114 ~tvG~~~-~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~-~~g~v~vng~~~ 167 (1211)
++|||.. .|++.+.++.+|..||+|+.... + ..+|++.+ ++|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999997543 3 47899988 7777 8999875
No 282
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.81 E-value=4.9e-06 Score=96.59 Aligned_cols=175 Identities=26% Similarity=0.344 Sum_probs=87.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----ccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-----ITSKW 984 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se-----L~s~~ 984 (1211)
.|.|.+.+|..|.-.+....... ...+...+..-+|||.|.||||||.|.+.+++.....+ +.++.. |....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 57788888777643222111100 00001122334799999999999999998875543322 333211 21110
Q ss_pred cc---chHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCC
Q 000950 985 FG---EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 985 ~G---~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld--gl~~k~~~~VlVIaTTN~ 1058 (1211)
.. ..+..+ .+.+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|+
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 00 011111 123445544 99999999998 33344555555554333332 222233467889999987
Q ss_pred CC-------------CCcHHHHhccCccccc-CCCCHHHHHHHHHHHHhhc
Q 000950 1059 PF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1059 p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~lL~k~ 1095 (1211)
.. .+++.+++||+.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4778899999977654 6677776777777777653
No 283
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.80 E-value=3.6e-05 Score=87.15 Aligned_cols=139 Identities=22% Similarity=0.339 Sum_probs=77.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEeccccccccccchHHHHHHHHHHH----Hh-------cCCcEEEEc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA----SK-------IAPSVVFVD 1010 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg-~~--fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k-------~~PsILfID 1010 (1211)
+.+||+||+|||||++++.+...+. .. ...++++... ....+..+.+.. ++ .+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999999877663 22 3345543311 112222222111 01 123599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCccEEEEEecCCC---CCCcHHHHhccCcccccCCCCH
Q 000950 1011 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1081 (1211)
Q Consensus 1011 EID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~------k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~ 1081 (1211)
|+..-. .+.-+.+.. ..++.+++.. .|... ..=.++.+||++++. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998542 222222221 2333333322 12211 112468889988764 35788898888 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 000950 1082 PNREKIIRVILAK 1094 (1211)
Q Consensus 1082 eeR~eILk~lL~k 1094 (1211)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988865
No 284
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.79 E-value=0.00012 Score=81.08 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=74.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
.+-.++||.|||||..++.+|+.+|.+++.++|.+.++ ...+.++|.-+... .+-+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46778999999999999999999999999999988543 34677777666654 489999999988 2111
Q ss_pred HHHHHHHHHhhhhhccC---------CcccCCccEEEEEecCC----CCCCcHHHHhccCcccccCCCCHHHHHHH
Q 000950 1025 HEAMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 1087 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldg---------l~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eI 1087 (1211)
-......+..+...+.. ....-+...-+..|.|+ ...|++.++.-| +.+.+..||.....++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 11111122222222111 11011123445555553 357888887777 7788889987654443
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00025 Score=80.95 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------ccccccc-cc----chHHHHHHHHHHHHhc----CC
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------SSITSKW-FG----EGEKYVKAVFSLASKI----AP 1004 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~--------seL~s~~-~G----~~e~~I~~lF~~A~k~----~P 1004 (1211)
+-+..+||+||.|+||+.+|.++|..+-+.-..-.| +++.--. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345689999999999999999999887432000011 1211000 01 1233455555555433 23
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCC
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
.|++||++|.|- ....+.|+..++. ++.++++|..|+.++.+.+.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999982 1233444444443 3467889999999999999999998 45666654
No 286
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.79 E-value=2.9e-05 Score=86.49 Aligned_cols=132 Identities=24% Similarity=0.360 Sum_probs=82.8
Q ss_pred eEEEEcCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----cccchHHHHHHHHHHHH--------hcCCcE
Q 000950 946 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLAS--------KIAPSV 1006 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA------~elg~~fi~I~~seL~s~-----~~G~~e~~I~~lF~~A~--------k~~PsI 1006 (1211)
.+||.||+|.||+.||+.|. +++..+|+.+||+.+.++ .+| .++..|.-|+ ....++
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCce
Confidence 59999999999999999985 455789999999998654 222 3444444333 223589
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-------CCCCcHHHHhccCcccccCCC
Q 000950 1007 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1007 LfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
||+|||..|. ..++.++.+.+++-....-|-...-...+-+|+-|-+ ...+-+.+..|+ ..+.|.+|
T Consensus 286 lfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lp 359 (531)
T COG4650 286 LFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLP 359 (531)
T ss_pred EehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeecc
Confidence 9999999883 3455555555554332222211111234556665532 123334455566 46788889
Q ss_pred CHHHHHHH
Q 000950 1080 DAPNREKI 1087 (1211)
Q Consensus 1080 d~eeR~eI 1087 (1211)
...+|.+=
T Consensus 360 gl~qr~ed 367 (531)
T COG4650 360 GLRQRQED 367 (531)
T ss_pred ccccCccc
Confidence 88877653
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.76 E-value=0.00023 Score=79.89 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=83.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--Cc-EEEEecccc----------ccc---c------ccchHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE--AG--AN-FINISMSSI----------TSK---W------FGEGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e--lg--~~-fi~I~~seL----------~s~---~------~G~~e~~I~~lF~~ 998 (1211)
..+-|.|+|++|+|||+||..+++. .. +. ++.++...- ... . ....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 3456999999999999999999977 32 22 223333220 000 0 0112233333443
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCC
Q 000950 999 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 999 A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
.-+..+.+|+||+++... .+..+...+.. ...+..||.||....... ..... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 334448999999997541 11222211111 112456666776543221 11111 35688899
Q ss_pred CCHHHHHHHHHHHHhhcc----cCCcccHHHHHHHcCCCcHHHHHHH
Q 000950 1079 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1079 Pd~eeR~eILk~lL~k~~----l~~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
.+.++-.++|+....... ...+.....|+..+.|. +-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999999876543 11223457888888764 4445444
No 288
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.66 E-value=0.0003 Score=86.06 Aligned_cols=175 Identities=19% Similarity=0.204 Sum_probs=95.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecccccc--cccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMSSITS--KWFG 986 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I-~~seL~s--~~~G 986 (1211)
.|.+++++|+.|.-.+.- .....+.+++-.+.--+|||+|.||||||.|.+.+++-+..-.+.- ..+.-.+ -++.
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 578899999888554422 2222333433233345699999999999999999998772211110 0000000 0000
Q ss_pred chHHHHHHHHHH---HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhh--hhhccCCcccCCccEEEEEecCCCC-
Q 000950 987 EGEKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRPF- 1060 (1211)
Q Consensus 987 ~~e~~I~~lF~~---A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~L--L~~ldgl~~k~~~~VlVIaTTN~p~- 1060 (1211)
. ....+++.-+ .--...+|..|||+|.| +...+..+..++++- -....|+...-+.+.-|||++|+..
T Consensus 508 r-d~dtkqlVLesGALVLSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 K-DPDTRQLVLESGALVLSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred e-cCccceeeeecCcEEEcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0 0000000000 00123479999999998 222333444444332 2233455444567788999998531
Q ss_pred ------------CCcHHHHhccCccc-ccCCCCHHHHHHHHHHHH
Q 000950 1061 ------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVIL 1092 (1211)
Q Consensus 1061 ------------~Ld~aLlrRF~~~I-~v~lPd~eeR~eILk~lL 1092 (1211)
.|++.+++||+.++ .++.||...-+.|-.++.
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 57899999998654 446677653444444443
No 289
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=5.4e-05 Score=85.80 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=60.4
Q ss_pred cccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 000950 402 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 481 (1211)
Q Consensus 402 ~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~ 481 (1211)
-++|+.+.+=-||+-=|= -+-|+-|++=|.+-|+-.++ +-..+|=+-+|=|||-|||| .....|.||||+++.+|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 356676766678886554 67788888877777776655 45579999999999999999 68999999999999888
No 290
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0015 Score=74.69 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE---------ecccccccc-cc--chHHHHHHHHHHHHhc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI---------SMSSITSKW-FG--EGEKYVKAVFSLASKI 1002 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-------i~I---------~~seL~s~~-~G--~~e~~I~~lF~~A~k~ 1002 (1211)
+.+..+||+|| .||+.+|.++|..+-+.- -.+ +.+++.--. .| -.-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 689999999998773211 000 011211000 01 1124566655555432
Q ss_pred ----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCC
Q 000950 1003 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1003 ----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
...|++||++|.|. ....|.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 23699999999982 2234455555554 3356888888988999999999999 6777755
Q ss_pred CCHHH
Q 000950 1079 PDAPN 1083 (1211)
Q Consensus 1079 Pd~ee 1083 (1211)
+.++
T Consensus 163 -~~~~ 166 (290)
T PRK07276 163 -NEAY 166 (290)
T ss_pred -cHHH
Confidence 4333
No 291
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.61 E-value=0.00042 Score=84.33 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=116.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc----ccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS----SITSKWF 985 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s----eL~s~~~ 985 (1211)
.|.|.+.+|.-|.-.+.-....... .+.. .+.--+|+|.|.||+||+-+.++++.-+-..++..--+ -|....+
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred cccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 5789999998886655322221111 0000 12223599999999999999999987764333322111 1111000
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecCCC
Q 000950 986 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 986 G~---~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN~p 1059 (1211)
.. .+-.+ .+..-.| ..+|..|||+|.| ...+|.++...+++-...+ -|+...-+.+.-||||+|+.
T Consensus 424 kD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv 495 (764)
T KOG0480|consen 424 KDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPV 495 (764)
T ss_pred ecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCc
Confidence 00 00000 0111122 2489999999998 3224555555544433333 23333345677889999874
Q ss_pred C-------------CCcHHHHhccCcc-cccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1060 F-------------DLDEAVVRRLPRR-LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1060 ~-------------~Ld~aLlrRF~~~-I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
. .+...+++||+.. |-++.|+...-..|-++++..+...++. ......|+..+++..+..|
T Consensus 496 ~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~-----~~~~~~~~~e~vrkYi~yA 570 (764)
T KOG0480|consen 496 GGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA-----TERVCVYTLEQVRKYIRYA 570 (764)
T ss_pred CCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-----ccccccccHHHHHHHHHHH
Confidence 2 5778999999864 4557888888888888888764332221 1111468888888777776
Q ss_pred H
Q 000950 1126 A 1126 (1211)
Q Consensus 1126 a 1126 (1211)
.
T Consensus 571 R 571 (764)
T KOG0480|consen 571 R 571 (764)
T ss_pred H
Confidence 5
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00051 Score=71.66 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
...|+++|+||+|||+++..|+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 293
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.00023 Score=75.51 Aligned_cols=79 Identities=29% Similarity=0.424 Sum_probs=65.7
Q ss_pred CCCceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeeeCCCceEEeeCCCEE
Q 000950 103 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDEL 181 (1211)
Q Consensus 103 ~~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~-~~g~v~vng~~~~k~~~~~L~~Gdei 181 (1211)
..+-+.+....+|+||...+++.|+|..+|-.||.|+..+.. .+||+.+ +||| +|||.++.. .+.|+.||.|
T Consensus 80 ~~~~~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i 152 (191)
T COG1716 80 EGSVIVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVI 152 (191)
T ss_pred cCcccccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEE
Confidence 334455556799999999999999999999999999987555 6667766 5688 899999997 6999999999
Q ss_pred EEccCCc
Q 000950 182 VFSPSGK 188 (1211)
Q Consensus 182 ~f~~~~~ 188 (1211)
.|+....
T Consensus 153 ~i~~~~~ 159 (191)
T COG1716 153 RLGGTLA 159 (191)
T ss_pred EECccce
Confidence 9987654
No 294
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.001 Score=74.79 Aligned_cols=121 Identities=7% Similarity=0.021 Sum_probs=76.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------------cccccccc---cchHHHHHHHHHHHHh---
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------------SSITSKWF---GEGEKYVKAVFSLASK--- 1001 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~--------------seL~s~~~---G~~e~~I~~lF~~A~k--- 1001 (1211)
.++..+||+||.|+||..+|.++|..+-+.--.-.| +++.--+. .-....++.+-.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456789999999999999999999887321000001 11110000 0112334444333221
Q ss_pred --cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCC
Q 000950 1002 --IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1002 --~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lP 1079 (1211)
....|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 124699999999982 2344556666554 4467899999999999999999998 34556555
No 295
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.50 E-value=0.00034 Score=79.98 Aligned_cols=161 Identities=20% Similarity=0.343 Sum_probs=94.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEeccc--cc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSS--IT--- 981 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~---elg~~fi~I~~se--L~--- 981 (1211)
.+.|..+..+.+.+.+.+- .+..-.+.++|.||.|+|||++...... +.|-+|+.|.... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt----------~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQT----------ILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHH----------HHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 4567777777777766531 1223346799999999999997665533 5566666554322 11
Q ss_pred ----------------cccccchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc
Q 000950 982 ----------------SKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1040 (1211)
Q Consensus 982 ----------------s~~~G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld 1040 (1211)
.+.+|.....+..+....+.. .+.|.++||||..++.. + ++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHH
Confidence 112333333344444333321 12344458999875322 1 22333333
Q ss_pred CCcccCCccEEEEEecCCCCC---CcHHHHhccCcc-ccc-CCCCHHHHHHHHHHHH
Q 000950 1041 GLRTKDKERVLVLAATNRPFD---LDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1092 (1211)
Q Consensus 1041 gl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF~~~-I~v-~lPd~eeR~eILk~lL 1092 (1211)
.+....+.++.||+.|.+.+- |...+.+||.++ |.+ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 333345688999999987654 456777799875 443 3345777788888777
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0019 Score=74.30 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=81.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccccccchHHHHHHHHHHHHh-----cCCc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1005 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~-------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k-----~~Ps 1005 (1211)
.+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +..+ .-..++.+.+.+.. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 356899999999999999999988722 12223210 1111 11234444443322 2446
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHH
Q 000950 1006 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1085 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~ 1085 (1211)
|++||++|.+. ....+.|+..++. ++..+++|.+|+.+..+-+++++|+ .++.+..|+.++-.
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999872 1233345555544 2355677777778899999999998 67999999888776
Q ss_pred HHHHH
Q 000950 1086 KIIRV 1090 (1211)
Q Consensus 1086 eILk~ 1090 (1211)
+.+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 66554
No 297
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.48 E-value=0.00034 Score=83.00 Aligned_cols=210 Identities=21% Similarity=0.269 Sum_probs=120.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------Eeccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSS 979 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i-~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~---------I~~se 979 (1211)
+|.|++++|+.|.-++.-...+ -...|. .+..-+|+|.|.||+-|+-|.++|.+-.-..++. +.++-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~---~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK---SPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC---CCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 6899999999987765421111 010110 1122359999999999999999998766332222 11111
Q ss_pred cccccccchHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEec
Q 000950 980 ITSKWFGEGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 980 L~s~~~G~~e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTT 1056 (1211)
+.....|+. .+ .+.+-+|. .+|..|||+|.+.. ....+...++++-...+ .|+...-+.+.-|+|++
T Consensus 420 mkDpvTgEM--~LEGGALVLAD---~GICCIDEfDKM~e-----~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 420 MKDPVTGEM--VLEGGALVLAD---GGICCIDEFDKMDE-----SDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hcCCCCCee--EeccceEEEcc---CceEeehhhhhhhh-----hhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 111111110 00 01112222 38999999999942 23334444444433333 45555556788899999
Q ss_pred CCCC-------------CCcHHHHhccCccccc-CCCCHHHHHHHHHHHHhh--cccC-----CcccHH------HHHHH
Q 000950 1057 NRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK--EELA-----SDVDLE------GIANM 1109 (1211)
Q Consensus 1057 N~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~lL~k--~~l~-----~dvdL~------~LA~~ 1109 (1211)
|+.. .|+.++++||+..+-+ ..|+.+.-..+.+++..- ..-. +.++.+ .+|+.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 8642 6889999999975544 678888777777765432 1111 123322 24455
Q ss_pred cCCCcHHHHHHHHHHHHhhhhHH
Q 000950 1110 ADGYSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1110 T~GySgaDL~~L~~~Aa~~Airr 1132 (1211)
..-+.+.+|..-+..|-....++
T Consensus 570 ~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 55677788877777666544443
No 298
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.0045 Score=74.86 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=102.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 979 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se------ 979 (1211)
.+.+++.-...-..++++.+.. -..|... -+.+-+||+||+|||||+.++.+++++|..++....+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~----~~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ----VAEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH----HHHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 3556666665555566555541 1111111 12245899999999999999999999999988765221
Q ss_pred -cccccccch------HHHHHHHHHHHHh------------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc
Q 000950 980 -ITSKWFGEG------EKYVKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1040 (1211)
Q Consensus 980 -L~s~~~G~~------e~~I~~lF~~A~k------------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld 1040 (1211)
+.....+-. -.........+.+ ..+.+|+|||+-..+... ..+..+.++..+ ...
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y-~s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRLY-VSI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHHH-Hhc-
Confidence 111111111 1111222233322 235699999997665322 233444455522 221
Q ss_pred CCcccCCccEEEEEec-CCCCCCcHHHH--------hccCcccccCCCCHHHHHHHHHHHHhhcccC-------CcccHH
Q 000950 1041 GLRTKDKERVLVLAAT-NRPFDLDEAVV--------RRLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 1104 (1211)
Q Consensus 1041 gl~~k~~~~VlVIaTT-N~p~~Ld~aLl--------rRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-------~dvdL~ 1104 (1211)
...++++|.|- ..++..++..+ -|+ ..|.|.+-...--.+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 12344444443 22232222111 144 467777777777777777777654322 123344
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1105 GIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1105 ~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
.++....| ||+..+....+
T Consensus 300 ~i~~~s~G----DIRsAInsLQl 318 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSLQL 318 (634)
T ss_pred HHHHhcCc----cHHHHHhHhhh
Confidence 55555444 55555544433
No 299
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0036 Score=69.76 Aligned_cols=174 Identities=20% Similarity=0.208 Sum_probs=102.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccc-----ccc----c--------chHHHHHHHHHHHHhc-CC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS-----KWF----G--------EGEKYVKAVFSLASKI-AP 1004 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~seL~s-----~~~----G--------~~e~~I~~lF~~A~k~-~P 1004 (1211)
-+.++|+-|+|||+++|+++..++ ...+.++...+.. .++ . ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999997776662 2234454433211 111 1 1122233344444444 45
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC-c---HHHHhccCcccccCCCC
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL-D---EAVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L-d---~aLlrRF~~~I~v~lPd 1080 (1211)
-++++||.+.|. ...-+.++.+.+.- .++ ...-.+++||-..-...+ - ..+..|+..+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl~---~~~---~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNLE---EDS---SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhhc---ccc---cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999983 23334444332211 111 111335555544211111 1 23444887668888889
Q ss_pred HHHHHHHHHHHHhhc----ccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000950 1081 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1081 ~eeR~eILk~lL~k~----~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Air 1131 (1211)
.++-..+++..++.- .+.++.-+..++..+.|| +.-+.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHHHHHHHHHHH
Confidence 998999999998874 344555677888888884 66788888877755443
No 300
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.38 E-value=0.00047 Score=81.21 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccccccccc------hHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGE------GEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~-~fi~I~~seL~s~~~G~------~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
..+++|++|||++|+|||+|.-.+...+.. .-..+.-..++...... ....+..+.....+ .-.+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 346799999999999999999999887743 11112211221111100 00112222222111 22499999997
Q ss_pred hhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 000950 1014 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 1014 ~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1059 (1211)
.- .......+.+++..+.. ..+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALFK----------RGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCCC
Confidence 53 22333344555555531 568999999863
No 301
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.32 E-value=0.00044 Score=67.41 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg 969 (1211)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 302
>PF14516 AAA_35: AAA-like domain
Probab=97.32 E-value=0.0024 Score=74.47 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-------------------------------
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG------------------------------- 988 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~------------------------------- 988 (1211)
|..-+.|.||..+|||+|...+.+.+ |...+.+++..+....+...
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44679999999999999999887665 78888888766432111110
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHH
Q 000950 989 EKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1065 (1211)
Q Consensus 989 e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1065 (1211)
.......|+.. .-..|-||+|||||.++.... ...+.. .++......-.. .....++.+|.+......+...
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~--~~~dF~-~~LR~~~~~~~~--~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ--IADDFF-GLLRSWYEQRKN--NPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc--hHHHHH-HHHHHHHHhccc--CcccceEEEEEecCcccccccC
Confidence 11222233321 123578999999999974321 011111 112222111110 0111234343333221112111
Q ss_pred H-Hh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCc
Q 000950 1066 V-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1114 (1211)
Q Consensus 1066 L-lr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GyS 1114 (1211)
. .+ .+...+.++.-+.++-..+++.+-.. . ....++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 1 11 23445667777788888887776322 2 2333888999998864
No 303
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.31 E-value=0.0012 Score=69.28 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc-----------------------chH-----
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 989 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~G-----------------------~~e----- 989 (1211)
+||+||||||||+|+..++.+. |.+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 666766665321100 000 000
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 990 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 990 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
..+..+...+....|.+|+||++..++.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999998753
No 304
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.001 Score=71.72 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=49.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------cchHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFSL 998 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~-----------------------G~~e~~I~~lF~~ 998 (1211)
.-++|+||||+|||+++..++... +..++.++...+....+ .+....+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 458999999999999999987654 66788888764111000 0011224444555
Q ss_pred HHhcCCcEEEEccchhhhc
Q 000950 999 ASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 999 A~k~~PsILfIDEID~L~~ 1017 (1211)
+.+..+.+|+||-|..++.
T Consensus 93 ~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HhhcCccEEEEeCcHHHhH
Confidence 5666789999999998863
No 305
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.19 E-value=0.00086 Score=72.07 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=56.8
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccccc----hHH-------------HHHHHHHHHHhcCCc
Q 000950 947 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1005 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAI-A~el---g~~fi~I~~seL~s~~~G~----~e~-------------~I~~lF~~A~k~~Ps 1005 (1211)
.|++|.||+|||+.|-.. .... |.+++. |...|.-..+.. .-. ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977555 4333 666554 444222111111 000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccC
Q 000950 1006 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~ 1077 (1211)
+|+|||++.+++.+.... ......+ +++... ....+-||.+|..+..++..++++....+.+.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998776421 1112233 223222 23567888899999999999988665555444
No 306
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.16 E-value=0.0041 Score=83.62 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=41.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
..+++++|++..++++...+... ....+-|-|+|++|+||||||+++++.+..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 35778999999999998877521 112356899999999999999999888743
No 307
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.16 E-value=0.0011 Score=73.15 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=42.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc----c----ccchHHHHHHHHHHHHh--cCCcEEE
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK----W----FGEGEKYVKAVFSLASK--IAPSVVF 1008 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se--L~s~----~----~G~~e~~I~~lF~~A~k--~~PsILf 1008 (1211)
.+-+..+||||+||+|||++|+.++. ..-++..+... +.+. . ....-+.+...+..+.. ....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 34346699999999999999999862 23334444321 1100 0 01111222333333322 3357999
Q ss_pred Eccchhhhc
Q 000950 1009 VDEVDSMLG 1017 (1211)
Q Consensus 1009 IDEID~L~~ 1017 (1211)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998754
No 308
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.14 E-value=0.00038 Score=68.08 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
|+|.|+||+||||+|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876663
No 309
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.14 E-value=0.00058 Score=82.75 Aligned_cols=154 Identities=26% Similarity=0.347 Sum_probs=82.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------Eeccc-
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSS- 979 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~---------I~~se- 979 (1211)
.|.|+..+|..+.-.+.-...+-.- .+.. .+.--++||+|.|||||+-+.+.+++-....++. +.+..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~-~khk-vRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPG-GKHK-VRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCC-CCce-eccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 4789999998887655422211000 0000 1111349999999999999999998876433332 22211
Q ss_pred ---cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 980 ---ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 980 ---L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
+...|.=++ +.+-+|.+ +|.+|||+|.+-..... .-++++.+ +..-..-.|+...-+.+..||+|+
T Consensus 528 KdPvtrEWTLEa-----GALVLADk---GvClIDEFDKMndqDRt-SIHEAMEQ--QSISISKAGIVtsLqArctvIAAa 596 (854)
T KOG0477|consen 528 KDPVTREWTLEA-----GALVLADK---GVCLIDEFDKMNDQDRT-SIHEAMEQ--QSISISKAGIVTSLQARCTVIAAA 596 (854)
T ss_pred eCCccceeeecc-----CeEEEccC---ceEEeehhhhhcccccc-hHHHHHHh--cchhhhhhhHHHHHHhhhhhheec
Confidence 122232111 12223444 89999999999432211 12222211 011111112222234678899999
Q ss_pred CCC-----------C--CCcHHHHhccCccccc
Q 000950 1057 NRP-----------F--DLDEAVVRRLPRRLMV 1076 (1211)
Q Consensus 1057 N~p-----------~--~Ld~aLlrRF~~~I~v 1076 (1211)
|+. + .|.+.+++||+....+
T Consensus 597 nPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 597 NPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred CCCCCccCCccchhhccccccchhhhcceeeee
Confidence 872 1 5667889999754333
No 310
>PHA00729 NTP-binding motif containing protein
Probab=97.13 E-value=0.00091 Score=73.81 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
.+|+|+|+||||||+||.+|++.++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998763
No 311
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.12 E-value=0.0067 Score=68.94 Aligned_cols=129 Identities=18% Similarity=0.266 Sum_probs=73.4
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEE-----Eeccc-
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--ANFIN-----ISMSS- 979 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g--~~fi~-----I~~se- 979 (1211)
+.|+.-+++.+...+...+..+ . .+.|--+=|+|++||||.++++.||+.+ | .+++. .+++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 6777777777777766433322 1 2223457789999999999999999876 2 23322 12221
Q ss_pred -cccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 980 -ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 980 -L~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
-... ..++....+-.-+...+.+|+++||+|.| .++ +-..+.-|+.........+..+.++|.-+|.
T Consensus 157 ~~ie~---Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----p~g----Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIED---YKEELKNRVRGTVQACQRSLFIFDEVDKL-----PPG----LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHH---HHHHHHHHHHHHHHhcCCceEEechhhhc-----CHh----HHHHHhhhhccccccccccccceEEEEEcCC
Confidence 0111 12333444555566777799999999998 222 2223333333222222123355677776664
No 312
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.10 E-value=0.00097 Score=85.72 Aligned_cols=162 Identities=24% Similarity=0.287 Sum_probs=101.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc-----c--hHHHHHHHH---HH--HHhcCCcEEEEccchh
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G-----~--~e~~I~~lF---~~--A~k~~PsILfIDEID~ 1014 (1211)
+|++||||.|||+.+.++|.++|+.++.+|.++..++... . ....+...| .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6999999999999999999999999999999876554321 1 112233333 00 0111124999999999
Q ss_pred hhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1015 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1015 L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
+++ .. +-.+..+..... ...+-+|+++|.........+.|....++|..|+.+.+..-+..++..
T Consensus 440 ~~~-~d--------Rg~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-ED--------RGGVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hh--------hhhHHHHHHHHH------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 865 11 111222221111 133456777776665555444554456999999999988888877766
Q ss_pred cccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1095 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1095 ~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
+.+. .+..++.+.+.+ ++||++.+..-.+
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhh
Confidence 5443 445567777766 4566666554443
No 313
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.10 E-value=0.00055 Score=80.07 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=64.2
Q ss_pred EecceEEEecccccceeecCCCC--CccceEEEEeecCCcceEEEEEecCcceEEECCeeeCCCce-EEeeCCCEEEEcc
Q 000950 109 MTGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSP 185 (1211)
Q Consensus 109 i~~~~~tvG~~~~c~~~l~d~~~--s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k~~~-~~L~~Gdei~f~~ 185 (1211)
......+|||+..||-.+.|+.- |.-||+|... .|. .+|=++++||+ +|||..+.-|.- +-|+.||||.++
T Consensus 23 f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG- 96 (430)
T COG3456 23 FDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG- 96 (430)
T ss_pred hhcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec-
Confidence 34567899999999999998865 9999999875 444 78889998877 899999999888 999999999874
Q ss_pred CCceeeEee
Q 000950 186 SGKHSYIFQ 194 (1211)
Q Consensus 186 ~~~~ayifq 194 (1211)
-|||.
T Consensus 97 ----~y~i~ 101 (430)
T COG3456 97 ----RYIIR 101 (430)
T ss_pred ----cEEEE
Confidence 37776
No 314
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.09 E-value=0.0065 Score=78.49 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 452 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 452 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
.+.+||.||+| ....+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 35699999999 68899999999999999887774
No 315
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.05 E-value=0.0016 Score=85.08 Aligned_cols=141 Identities=25% Similarity=0.311 Sum_probs=86.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------ccc-cccc--hHH-HHHHHHHHHHhcCCcEEEEccchh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSK-WFGE--GEK-YVKAVFSLASKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL------~s~-~~G~--~e~-~I~~lF~~A~k~~PsILfIDEID~ 1014 (1211)
+++||.|.||+|||+|..++|+..|-.+++||.++- ++. ..++ ++- ....-|-.|.+. ..-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 459999999999999999999999999999998762 221 1111 111 122234444443 36889999963
Q ss_pred hhcCCCCCchHHHHHHHHHh----hhhhccCCcccCCccEEEEEecCCC------CCCcHHHHhccCcccccCCCCHHHH
Q 000950 1015 MLGRRENPGEHEAMRKMKNE----FMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNR 1084 (1211)
Q Consensus 1015 L~~~r~s~~~~e~l~~il~~----LL~~ldgl~~k~~~~VlVIaTTN~p------~~Ld~aLlrRF~~~I~v~lPd~eeR 1084 (1211)
- ++..-+-++..+.. ++-.++. .-+...+++|.||-|+. ..|+..++.|| .++.+...+.++.
T Consensus 1623 a-----SQSVlEGLNacLDhR~eayIPEld~-~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi 1695 (4600)
T COG5271 1623 A-----SQSVLEGLNACLDHRREAYIPELDK-TFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDI 1695 (4600)
T ss_pred h-----HHHHHHHHHHHHhhccccccccccc-eeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchH
Confidence 2 11111222222211 1111211 11234678999998875 36899999999 5677777666666
Q ss_pred HHHHHHHHh
Q 000950 1085 EKIIRVILA 1093 (1211)
Q Consensus 1085 ~eILk~lL~ 1093 (1211)
..|...+..
T Consensus 1696 ~~Ia~~~yp 1704 (4600)
T COG5271 1696 THIANKMYP 1704 (4600)
T ss_pred HHHHHhhCC
Confidence 665555443
No 316
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0033 Score=80.59 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=97.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc--cccccchHHHHHHHHHHHHhc-CCcEEEEcc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDE 1011 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDE 1011 (1211)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 3456677765443 345677888999999988854 456889999
Q ss_pred chhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-----CCCCcHHHHhccCcccccCCCCHHHHHH
Q 000950 1012 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 1086 (1211)
Q Consensus 1012 ID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~e 1086 (1211)
++-+.+...+.+ .-...+-|...+ .++.+.+|+||.. ...-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999876554422 111222222111 1234899998753 2356789999994 67789999888777
Q ss_pred HHHHHHhh
Q 000950 1087 IIRVILAK 1094 (1211)
Q Consensus 1087 ILk~lL~k 1094 (1211)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766554
No 317
>PRK08118 topology modulation protein; Reviewed
Probab=97.02 E-value=0.0013 Score=69.34 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
+.|+|.||||+||||||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 318
>PHA02624 large T antigen; Provisional
Probab=97.02 E-value=0.00075 Score=82.99 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=65.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC-CCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE-NPG 1023 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~-s~~ 1023 (1211)
+.+||+||||||||+++.+|++.++...+.++++.-.+. |.+.--....+.+||++-.-.-... -+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777788886652221 1111111125777887742211000 000
Q ss_pred hHHHHHHHHHhhhhhccCC-cc----cCCccE-----EEEEecCCCCCCcHHHHhccCcccccCC
Q 000950 1024 EHEAMRKMKNEFMVNWDGL-RT----KDKERV-----LVLAATNRPFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1024 ~~e~l~~il~~LL~~ldgl-~~----k~~~~V-----lVIaTTN~p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
++-. .. +..+...+||- .- +...++ -+|.|||. ..|+..+.-||..++.|..
T Consensus 500 G~~~-dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGM-NN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccc-ch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0000 00 01222334443 10 111111 23456664 6788888889988888864
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.02 E-value=0.003 Score=74.81 Aligned_cols=96 Identities=24% Similarity=0.429 Sum_probs=61.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc--------chHHHHHHHHHHHHhcCCc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~G--------~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+..-+||+|+||+|||+|+..+|... +.++++++..+-... .+| ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 44558999999999999999998765 457777776432111 011 0122355667777778899
Q ss_pred EEEEccchhhhcCCC--CCchHHHHHHHHHhhhhh
Q 000950 1006 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~--s~~~~e~l~~il~~LL~~ 1038 (1211)
+|+||+|..++.... .++.....+.++..|...
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~l 195 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRF 195 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence 999999999864331 123334445555554443
No 320
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.02 E-value=0.00044 Score=73.08 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
+|+|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0031 Score=76.37 Aligned_cols=96 Identities=26% Similarity=0.429 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------cc--------chHHHHHHHHHHHHhcCCc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~------~G--------~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+..-+||+|+||+|||+|+..++... +.++++++..+-.... +| ..+..+..++..+.+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999998765 6778888865422111 11 0122355666777777899
Q ss_pred EEEEccchhhhcCCC--CCchHHHHHHHHHhhhhh
Q 000950 1006 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~--s~~~~e~l~~il~~LL~~ 1038 (1211)
+|+||+|..++.... .++.....+.++..|...
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ 193 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRL 193 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHH
Confidence 999999998864321 122333344444444433
No 322
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=96.95 E-value=0.0019 Score=79.42 Aligned_cols=87 Identities=30% Similarity=0.407 Sum_probs=73.3
Q ss_pred cceEEEecccccceeecCCCCCccceEEEEeecCCcc--------eEEEEEecC-cceEEECCeeeCCCceEEeeCCCEE
Q 000950 111 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPS--------GALLEITGG-KGEVEVNGNVHPKDSQVVLRGGDEL 181 (1211)
Q Consensus 111 ~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~--------~a~le~~~~-~g~v~vng~~~~k~~~~~L~~Gdei 181 (1211)
...|+|||-..||+-+--++||..||-|.+ .+.|+. .-++.+.|+ -|+ ++|.+++.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy-~~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQY-KASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeec-cCCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 378999999999999999999999999985 444432 356666655 498 899999999999999999999
Q ss_pred EEccCCceeeEeeccCccc
Q 000950 182 VFSPSGKHSYIFQQLSDDT 200 (1211)
Q Consensus 182 ~f~~~~~~ayifq~l~~~~ 200 (1211)
-|+.+.+ -||||+-..+.
T Consensus 254 ~fggsTr-l~i~Qgp~eD~ 271 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDE 271 (793)
T ss_pred HhcCceE-EEEeeCCCcCC
Confidence 9999988 89999865554
No 323
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.002 Score=68.04 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.|+|.|+||+||||||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 589999999999999999999999998887643
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.87 E-value=0.023 Score=68.68 Aligned_cols=199 Identities=18% Similarity=0.237 Sum_probs=99.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc---------------ccccc-----hHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---------------KWFGE-----GEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s---------------~~~G~-----~e~~I~~lF~~A 999 (1211)
+|..++|+|++|+|||+++..+|..+ |..+..+++..+.. ..++. ....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45779999999999999999998877 55666666543211 01111 112233444444
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCc-----cc
Q 000950 1000 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR-----RL 1074 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~-----~I 1074 (1211)
... .+|+||...++. .. ..+++++.....-.. ....++|+-++...+.++. .++|.. -+
T Consensus 174 ~~~--DvVIIDTAGr~~------~d----~~lm~El~~l~~~~~--pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA------LE----EDLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc------ch----HHHHHHHHHHHHHhc--ccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 443 799999986651 11 122222222211111 1234555555443332321 223432 23
Q ss_pred ccCCCCHHHHHH-HHHHHHhh----------cccC--CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000950 1075 MVNLPDAPNREK-IIRVILAK----------EELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1141 (1211)
Q Consensus 1075 ~v~lPd~eeR~e-ILk~lL~k----------~~l~--~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~ 1141 (1211)
.+.-.|...|.- +|...... +.+. ...+.+.++...-|+ +|+..|++.|.... .+- +..+...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~-~~~-~~~~~~~ 313 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEAL-DEE-EEEKDVE 313 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhh-hHH-HHHHHHH
Confidence 344455444432 33332221 1121 234467777776443 58888888776421 110 0001010
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1142 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1142 ~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
... .-..+++||...+++++
T Consensus 314 --~~~-------------~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 314 --KMM-------------KGKFTLKDMYKQLEAMN 333 (437)
T ss_pred --HHH-------------cCCcCHHHHHHHHHHHH
Confidence 111 12478999999888765
No 325
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.86 E-value=0.0024 Score=66.50 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 980 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~---fi~I~~seL 980 (1211)
++|.++..+.|..++.. .. ...++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46788888888886631 11 2234679999999999999999998776322 777777654
No 326
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.84 E-value=0.0044 Score=67.76 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+..-++|+|+||+|||+++..+|.+. +.+++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33458999999999999999998754 6778888876
No 327
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.83 E-value=0.0012 Score=68.33 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
++..|+|+|+||+|||++|+++|+.++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888644
No 328
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.006 Score=70.83 Aligned_cols=74 Identities=26% Similarity=0.342 Sum_probs=51.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------------ccccchHHHHHHHHHHHHhcCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s----------------~~~G~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+-++|+||||+|||+||..++.+. +.+++.+++..... ......++.+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458999999999999988776544 67777777644111 11122344555555556667789
Q ss_pred EEEEccchhhhcC
Q 000950 1006 VVFVDEVDSMLGR 1018 (1211)
Q Consensus 1006 ILfIDEID~L~~~ 1018 (1211)
+|+||-+..|.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999998753
No 329
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.76 E-value=0.018 Score=75.12 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=81.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c------------cc---------------chHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 994 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~---~------------~G---------------~~e~~I~~ 994 (1211)
+-++|+||+|.|||+++...++..+ ++..+++..-.+. + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4599999999999999999887776 6555554210000 0 00 00112233
Q ss_pred HHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcc
Q 000950 995 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1073 (1211)
Q Consensus 995 lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~ 1073 (1211)
++..... ..|.+|+|||++.+- + ......+..++... + ..+.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~~---~----~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRHQ---P----ENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHhC---C----CCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568899999999761 1 12223333343322 1 33444445543222321111111223
Q ss_pred cccC----CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1074 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1074 I~v~----lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
+.+. ..+.++-.+++...+.. . .+..++..|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-P-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHhCChHH
Confidence 4444 55788888888765432 1 245567888899998754
No 330
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.76 E-value=0.002 Score=79.12 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 977 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~ 977 (1211)
-|+|+.|++++++.|.+++..... ++....+-++|.||||+|||+||+.|++.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 578999999999999988743211 112233469999999999999999999887 456666543
No 331
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.72 E-value=0.0061 Score=69.00 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=60.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-ccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 981 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s-eL~ 981 (1211)
.++++++-.....+.|++++.. +...++|.||+|+|||++++++..... ..++.+.-+ ++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577787777777777766541 223489999999999999999987763 334444321 211
Q ss_pred cc-----ccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 982 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 982 s~-----~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 111 111235566777788999999999994
No 332
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.71 E-value=0.011 Score=65.41 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cc-----------------------c--ch
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF-----------------------G--EG 988 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~-----------------------G--~~ 988 (1211)
+..-++|.|++|||||+++..++... +...++++..+-... .+ + ..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986665443 566666664320000 00 0 01
Q ss_pred HHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000950 989 EKYVKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 989 e~~I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555666666678999999998764
No 333
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.62 E-value=0.0076 Score=70.08 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccchHHHHHHHHHHHHhcCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL----------------~s~~~G~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+-++|+||||+|||+||-.++.+. +..++.++...- .-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 448999999999999999886544 677788776431 1001122344444444555667789
Q ss_pred EEEEccchhhhcC
Q 000950 1006 VVFVDEVDSMLGR 1018 (1211)
Q Consensus 1006 ILfIDEID~L~~~ 1018 (1211)
+|+||-+-.|++.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999999753
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.60 E-value=0.0041 Score=67.22 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=43.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-cccc---------ccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 1011 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg----~~fi~I~~s-eL~s---------~~~G~~e~~I~~lF~~A~k~~PsILfIDE 1011 (1211)
-++|.||+|+|||+++++++..+. ..++.+..+ ++.. ..++.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 389999999999999999988774 223333221 1110 01122222345556667777899999999
Q ss_pred c
Q 000950 1012 V 1012 (1211)
Q Consensus 1012 I 1012 (1211)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 335
>CHL00181 cbbX CbbX; Provisional
Probab=96.60 E-value=0.01 Score=68.02 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=77.9
Q ss_pred eEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCCCC
Q 000950 666 LIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 739 (1211)
Q Consensus 666 ~Ilf~~die~~l~~------~~~~~~~i~s~L~~L~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~ 739 (1211)
-||||||++.+... ..+....|...++...++++||++++. +. ++.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~~----------------------~~~----- 175 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-DR----------------------MDK----- 175 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-HH----------------------HHH-----
Confidence 49999999984321 245555666667766788999999762 10 110
Q ss_pred ccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhh---hcchhhhccchhhHHHHHhhhCCCCcccchhh
Q 000950 740 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE---RDVETLKGQSNIISIRSVLSRNGLDCVDLESL 816 (1211)
Q Consensus 740 ~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e---~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~L 816 (1211)
.......|.++|+..|.++++..+.+...|...+. ..+... +...+... .. ..
T Consensus 176 ----------~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~---i~----------~~ 231 (287)
T CHL00181 176 ----------FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDY---IK----------KR 231 (287)
T ss_pred ----------HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHH---HH----------Hh
Confidence 01112468889999999999999888776655443 333322 11111111 00 00
Q ss_pred hcccCCCC-HHHHHHHHhhhhhhHhhhccC
Q 000950 817 CIKDQTLT-TEGVEKIVGWALSHHFMHCSE 845 (1211)
Q Consensus 817 A~~tkg~s-gadI~~Lv~~A~s~Al~r~~~ 845 (1211)
.....|+ +-+++.++..|.....+|...
T Consensus 232 -~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 232 -MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred -CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 1134566 889999999998888877654
No 336
>PRK13695 putative NTPase; Provisional
Probab=96.55 E-value=0.011 Score=62.18 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
.++|.|++|+|||+|++.++.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987765
No 337
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.53 E-value=0.0045 Score=62.14 Aligned_cols=31 Identities=52% Similarity=0.816 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
|++.||||+|||++|+.++..++..+ ++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHH
Confidence 78999999999999999999999444 44433
No 338
>PRK04296 thymidine kinase; Provisional
Probab=96.49 E-value=0.018 Score=61.92 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc----c----cccccccch-----HHHHHHHHHHHH--hcCCcEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-----EKYVKAVFSLAS--KIAPSVV 1007 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s----e----L~s~~~G~~-----e~~I~~lF~~A~--k~~PsIL 1007 (1211)
-+|++||+|+|||+++..++.++ +..++.+... . +.+. .|.. ......++..+. .....+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37999999999999998887766 5555555431 1 1111 1110 011233333332 2356899
Q ss_pred EEccchhh
Q 000950 1008 FVDEVDSM 1015 (1211)
Q Consensus 1008 fIDEID~L 1015 (1211)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 339
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.47 E-value=0.022 Score=66.30 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEeccccccc-------cccchHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~f-i~I~~seL~s~-------~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
.+++|+.|||+-|.|||+|.-.....+..+- ..+.--.++-. +.|.. ..+..+-....+ .-.||.|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeeee
Confidence 4679999999999999999999988774322 11211111110 11211 011111111111 12599999997
Q ss_pred hhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 1014 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 1014 ~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
.= .......+.++++.|+. ..|.+++|+|.
T Consensus 141 Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 141 VT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred ec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 42 22333345556655542 46889999986
No 340
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.47 E-value=0.0068 Score=71.83 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEeccc----------------cccccccchHHHHH---HHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS----------------ITSKWFGEGEKYVK---AVFSLAS 1000 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~-----~fi~I~~se----------------L~s~~~G~~e~~I~---~lF~~A~ 1000 (1211)
...||+||+|+|||+|++.|++.... ..+.+...+ +.+.+-...+..++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987632 222222211 12222222333333 3444554
Q ss_pred hc----CCcEEEEccchhhh
Q 000950 1001 KI----APSVVFVDEVDSML 1016 (1211)
Q Consensus 1001 k~----~PsILfIDEID~L~ 1016 (1211)
.. ...+||||||+++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 32 45799999999986
No 341
>PRK13947 shikimate kinase; Provisional
Probab=96.45 E-value=0.0027 Score=66.10 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 342
>PRK03839 putative kinase; Provisional
Probab=96.45 E-value=0.0027 Score=67.02 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|+|.|+||+||||+++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987765
No 343
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.43 E-value=0.018 Score=68.92 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=69.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchH
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1025 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~ 1025 (1211)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~W~ 110 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PDWE 110 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hhHH
Confidence 799999999999999988888875556666655544332211 11222233333334579999999876 1122
Q ss_pred HHHHHHHHhhhhhccCCcccCCccEEEEEecCC--CCCCcHHHHhccCcccccCCCCHHHHHH
Q 000950 1026 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVNLPDAPNREK 1086 (1211)
Q Consensus 1026 e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRF~~~I~v~lPd~eeR~e 1086 (1211)
..+ ..+ .+.. +.++++.+++.. ...+.+.+..|. ..+.+.+.+..|...
T Consensus 111 ~~l----k~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 111 RAL----KYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHH----HHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 222 222 2221 113444444432 123345555574 667777788887754
No 344
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.43 E-value=0.015 Score=63.16 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
.-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458999999999999999998765 5677777654
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.36 E-value=0.0085 Score=64.73 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+-.+|.|+||||||++++.++..+ +..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 358899999999999999987655 6667666643
No 346
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.35 E-value=0.015 Score=58.91 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.|.|+.-+.+.+...+...+..+ . .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47888888888887776544322 1 1222456799999999999999999986
No 347
>PHA02774 E1; Provisional
Probab=96.34 E-value=0.017 Score=71.20 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~-I~~ 977 (1211)
+.++|+||||||||++|.+|++.++..++. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 579999999999999999999999655544 553
No 348
>PRK13948 shikimate kinase; Provisional
Probab=96.31 E-value=0.004 Score=66.74 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998666
No 349
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.31 E-value=0.0037 Score=63.60 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999988665
No 350
>PRK00625 shikimate kinase; Provisional
Probab=96.31 E-value=0.0036 Score=66.50 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 351
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.27 E-value=0.025 Score=59.99 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHH--------------------HHHHHHHHHHhcCCc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1005 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~--------------------~I~~lF~~A~k~~Ps 1005 (1211)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777765442211 1111 123332211 23457
Q ss_pred EEEEccchhhhc
Q 000950 1006 VVFVDEVDSMLG 1017 (1211)
Q Consensus 1006 ILfIDEID~L~~ 1017 (1211)
+++||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999999864
No 352
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.27 E-value=0.0065 Score=68.32 Aligned_cols=96 Identities=21% Similarity=0.378 Sum_probs=59.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-ccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 981 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s-eL~ 981 (1211)
.++++++-.....+.+.+++...+ +....+|+.|++|+|||+++++++.... ..++.+.-+ ++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 466777666666666666655311 1235799999999999999999998873 344544421 211
Q ss_pred cc------cc-cchHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 982 SK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 982 s~------~~-G~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
-. .. .........++..+.+..|.+|+|.||-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 00 00 1123346667778888999999999994
No 353
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.26 E-value=0.028 Score=62.32 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=28.1
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 938 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 938 ~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
+|+ .+...+||+||||+|||+|+..++.+. |-+.+.+..
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 443 345679999999999999998776542 556655554
No 354
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.24 E-value=0.021 Score=60.55 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=46.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc-----------------ccchHHHHHHHHHHHHhcCCcEEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-----------------FGEGEKYVKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~-----------------~G~~e~~I~~lF~~A~k~~PsILfI 1009 (1211)
+||.|++|+|||++|..++...+.+++++....-.+.- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877788877654422110 001112233333211 14679999
Q ss_pred ccchhhhcCC
Q 000950 1010 DEVDSMLGRR 1019 (1211)
Q Consensus 1010 DEID~L~~~r 1019 (1211)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 355
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.24 E-value=0.02 Score=69.76 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------hHHHHHHHHHHHHhcCCc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~G~--------~e~~I~~lF~~A~k~~Ps 1005 (1211)
+..-+||.|+||+|||+|+..++... +.++++++..+-... .+|. .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 44558999999999999999997655 456777776442111 0110 112345566666777899
Q ss_pred EEEEccchhhhc
Q 000950 1006 VVFVDEVDSMLG 1017 (1211)
Q Consensus 1006 ILfIDEID~L~~ 1017 (1211)
+|+||.|..++.
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998864
No 356
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0034 Score=64.81 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
++||++|-||||||+++..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999888764
No 357
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.20 E-value=0.036 Score=62.39 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
..++|+||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 358
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.20 E-value=0.036 Score=63.39 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=71.4
Q ss_pred CeEEEEcChhhhhcc------ChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCCC
Q 000950 665 PLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 738 (1211)
Q Consensus 665 P~Ilf~~die~~l~~------~~~~~~~i~s~L~~L~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd 738 (1211)
+-||||||++.+... ..+.-+.|...|+.-.+.++||++++.. . +|.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~-~----------------------~~~---- 174 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD-R----------------------MDS---- 174 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-H----------------------HHH----
Confidence 359999999984221 1334445556666667799999987721 0 110
Q ss_pred CccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhh---cchhhhccchhhHHHHHhhhCCCCcccchh
Q 000950 739 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER---DVETLKGQSNIISIRSVLSRNGLDCVDLES 815 (1211)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~---~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~ 815 (1211)
.......|..+|+..|.++++.++.+...|...+.. .+... +. ..+...+. .
T Consensus 175 -----------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~-a~---~~L~~~l~----------~ 229 (284)
T TIGR02880 175 -----------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE-AE---EAFADYIA----------L 229 (284)
T ss_pred -----------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH-HH---HHHHHHHH----------H
Confidence 111235677888889999998888887655544332 11111 00 00100000 0
Q ss_pred hhcccCCCC-HHHHHHHHhhhhhhHhhhccC
Q 000950 816 LCIKDQTLT-TEGVEKIVGWALSHHFMHCSE 845 (1211)
Q Consensus 816 LA~~tkg~s-gadI~~Lv~~A~s~Al~r~~~ 845 (1211)
......++ +-+++.++..|......|...
T Consensus 230 -~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 230 -RRTQPHFANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred -hCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 01112343 677888888888777776643
No 359
>PRK14532 adenylate kinase; Provisional
Probab=96.20 E-value=0.0043 Score=65.84 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.||||+|||++|+.||+.+|+.++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766544
No 360
>PRK09354 recA recombinase A; Provisional
Probab=96.16 E-value=0.025 Score=66.37 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=49.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------------cccccchHHHHHHHHHHHHhcCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~----------------s~~~G~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+-++|+||+|+|||+|+-.++... |...++++...-. -......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 448999999999999999876443 7777777764411 001122344444444455666789
Q ss_pred EEEEccchhhhc
Q 000950 1006 VVFVDEVDSMLG 1017 (1211)
Q Consensus 1006 ILfIDEID~L~~ 1017 (1211)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 361
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.16 E-value=0.017 Score=70.14 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=103.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 980 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f---------i~I~~seL 980 (1211)
.|.|.+.+|+.|.-++.-... .....+.-.+.--+||+.|.|-+-|+-|.+++.+.....+ +-+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 478999999998776542111 1111121122223599999999999999999987652111 11111111
Q ss_pred ccccccchHHHHHH-HHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc--cCCcccCCccEEEEEecC
Q 000950 981 TSKWFGEGEKYVKA-VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 1057 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~-lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l--dgl~~k~~~~VlVIaTTN 1057 (1211)
... ..+|..+.. ..-+|.+ +|+.|||+|.| +.....+...++++-.+.+ .|+..+-+.+.-|||+.|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 122333322 2334444 89999999998 4445556666666655554 355555578899999999
Q ss_pred CCC-------------CCcHHHHhccCccccc-CCCCHHHHHHHHHHHHh
Q 000950 1058 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1093 (1211)
Q Consensus 1058 ~p~-------------~Ld~aLlrRF~~~I~v-~lPd~eeR~eILk~lL~ 1093 (1211)
+.+ .|++.+++||+..+.+ ..-+...-..|-++.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 743 5778999999865443 44444444555555544
No 362
>PRK06217 hypothetical protein; Validated
Probab=96.16 E-value=0.0049 Score=65.53 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|+|.|++|+|||++|++|++.++++++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35999999999999999999999999987765
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.15 E-value=0.045 Score=60.40 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------ccc-------------------c
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF-------------------G 986 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s--------------~~~-------------------G 986 (1211)
+..-++|+|+||+|||+|+..++.+. +.+++.++..+-.. +++ .
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 34569999999999999999997553 66666666533100 000 0
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000950 987 EGEKYVKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 987 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
..+..+..+........|.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012334444445555688999999998764
No 364
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.15 E-value=0.047 Score=64.02 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=43.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
+.+.+.+...|..++-. .. ..-|..|.|+|..|||||++.+.+.+.++.+.+.++|-+
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 45566777777776531 11 122356899999999999999999999999999988855
No 365
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.14 E-value=0.0045 Score=65.15 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
|+|+|+||+|||++|+.||..+++.+ +++.++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHH
Confidence 78999999999999999999998654 4444443
No 366
>PRK13949 shikimate kinase; Provisional
Probab=96.14 E-value=0.0046 Score=65.29 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 367
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.13 E-value=0.026 Score=74.08 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=82.4
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhc--------------CCcEEE
Q 000950 944 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1008 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~L-ArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~--------------~PsILf 1008 (1211)
.++++++||||+|||+| ..++-.++...++.+|-+.-.. ++..+..+-.....+ +.-|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 37899999999999995 5677778878888877543211 122222222111111 114999
Q ss_pred EccchhhhcCCCCCchH---HHHHHHHHh--h----hhhccCCcccCCccEEEEEecCCCCCC-----cHHHHhccCccc
Q 000950 1009 VDEVDSMLGRRENPGEH---EAMRKMKNE--F----MVNWDGLRTKDKERVLVLAATNRPFDL-----DEAVVRRLPRRL 1074 (1211)
Q Consensus 1009 IDEID~L~~~r~s~~~~---e~l~~il~~--L----L~~ldgl~~k~~~~VlVIaTTN~p~~L-----d~aLlrRF~~~I 1074 (1211)
.|||. | +....-..+ -+++.++.. | -..|..+ .++++.|++|++.+. .+.++||- ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 333221111 123333222 1 1122221 578999999987543 35566553 457
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q 000950 1075 MVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1075 ~v~lPd~eeR~eILk~lL~k 1094 (1211)
.+..|.......|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 78899999888988887765
No 368
>PRK06762 hypothetical protein; Provisional
Probab=96.11 E-value=0.013 Score=60.97 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
.-|+|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999996666666654443
No 369
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.11 E-value=0.036 Score=61.01 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 977 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~ 977 (1211)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999999886554 778877775
No 370
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.11 E-value=0.066 Score=62.24 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=39.8
Q ss_pred ccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 000950 412 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 484 (1211)
Q Consensus 412 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLi 484 (1211)
+|++|-.- ++.+..|..+.-..... ....+.+||+||+| .....||+++|+.+++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776555 66666555444321111 12345799999999 89999999999999866543
No 371
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.014 Score=70.69 Aligned_cols=91 Identities=24% Similarity=0.332 Sum_probs=62.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEE---EEecc-
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NISMS- 978 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~g-ILL~GPpGTGKT~LArAIA~elg~~fi---~I~~s- 978 (1211)
...+|++++......+.+.+.+.. | .| +|++||+|+|||+...++..+++.+.. .+.-+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~---------------p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV 296 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR---------------P-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV 296 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC---------------C-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe
Confidence 356788899988888888887642 3 45 799999999999999999988854433 32211
Q ss_pred -----ccc----cccccchHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 979 -----SIT----SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 979 -----eL~----s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
.+. +...|- .....+....++.|.||++.||-
T Consensus 297 E~~~~gI~Q~qVN~k~gl---tfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 297 EYQLPGINQVQVNPKIGL---TFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eeecCCcceeecccccCC---CHHHHHHHHhccCCCeEEEeccC
Confidence 111 001111 23344555678899999999995
No 372
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.09 E-value=0.021 Score=67.11 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--EEEeccccccc-----------c----ccchH----HHHHHHHHHH
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISMSSITSK-----------W----FGEGE----KYVKAVFSLA 999 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~f--i~I~~seL~s~-----------~----~G~~e----~~I~~lF~~A 999 (1211)
..||+||+|||.-|||||||.-.+-..+-... ..|...+++.. . .|.+. ..+.-+-.+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 55789999999999999999988875442100 01111111100 0 00000 0011111111
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-CCCCcHHHHhccCcccccCC
Q 000950 1000 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
.. .-.+|.+||+..- .-...-.+++++..|+. ..++++||+|+ |++|-..-+.|- ..++
T Consensus 191 a~-ea~lLCFDEfQVT-----DVADAmiL~rLf~~Lf~----------~GvVlvATSNR~P~dLYknGlQR~---~F~P- 250 (467)
T KOG2383|consen 191 AE-EAILLCFDEFQVT-----DVADAMILKRLFEHLFK----------NGVVLVATSNRAPEDLYKNGLQRE---NFIP- 250 (467)
T ss_pred hh-hceeeeechhhhh-----hHHHHHHHHHHHHHHHh----------CCeEEEEeCCCChHHHhhcchhhh---hhhh-
Confidence 11 1368999999643 11122234455544432 46889999987 455554333321 1111
Q ss_pred CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcC-C--CcHH-HHHHHHHH
Q 000950 1079 PDAPNREKIIRVILAKEELASDVDLEGIANMAD-G--YSGS-DLKNLCVT 1124 (1211)
Q Consensus 1079 Pd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~-G--ySga-DL~~L~~~ 1124 (1211)
-..+|+..+.-..+.+.+|....+.-.+ + |.+. |...++++
T Consensus 251 -----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~ 295 (467)
T KOG2383|consen 251 -----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKE 295 (467)
T ss_pred -----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHH
Confidence 2345666666667777888874333222 2 2333 55555544
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=96.09 E-value=0.039 Score=64.71 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+.-++|.|++|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888766 5556555543
No 374
>PRK05973 replicative DNA helicase; Provisional
Probab=96.08 E-value=0.052 Score=60.69 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
.+..-+||.|+||+|||+++-.++.+. |.+++.++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 444569999999999999999887654 6666666643
No 375
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.06 E-value=0.012 Score=66.78 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccccc-------cccc------hHHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 1000 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~----------~fi~I~-~seL~s~-------~~G~------~e~~I~~lF~~A~ 1000 (1211)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987732 222221 1111111 0010 1112345677777
Q ss_pred hcCCcEEEEccch
Q 000950 1001 KIAPSVVFVDEVD 1013 (1211)
Q Consensus 1001 k~~PsILfIDEID 1013 (1211)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 376
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.016 Score=68.70 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998764
No 377
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.05 E-value=0.04 Score=60.32 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccc-----------------------------cc----c
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-----------------------------KW----F 985 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s-----------------------------~~----~ 985 (1211)
+..-+||.||||+|||.|+..++... |-+++.+...+-.. .. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 34569999999999999999876433 77777777533100 00 0
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
...+..+..+...+....+.+++||.+..+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 122445566666677778899999999998
No 378
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.05 E-value=0.066 Score=59.95 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=73.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccc--------c-c-----chHHHHHH----HHHHHH---
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYVKA----VFSLAS--- 1000 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s~~--------~-G-----~~e~~I~~----lF~~A~--- 1000 (1211)
+-++.+.|++|||||+|+..+...+. +..+.+-++.....+ + . +.+..+.. +-..+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35799999999999999999987763 233333332211111 0 0 00111111 111111
Q ss_pred h---cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccC
Q 000950 1001 K---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1001 k---~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~ 1077 (1211)
. ..+.+|+||++..- ..-.+.+..+... ...-++-+|..+.....+++.++.-.+..+.++
T Consensus 93 ~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~------gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN------GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred ccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc------ccccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 12579999997421 0112233444321 133568888888888999999877776666565
Q ss_pred CCCHHHHHHHHHHH
Q 000950 1078 LPDAPNREKIIRVI 1091 (1211)
Q Consensus 1078 lPd~eeR~eILk~l 1091 (1211)
-+..+...|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 3556655555544
No 379
>PRK13764 ATPase; Provisional
Probab=96.04 E-value=0.017 Score=72.10 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=41.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc-----ccccccchHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~-seL-----~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
.++|++||+|+||||++++++..+. ..+..+.- .++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 33323321 111 11111 000112233334457789999999994
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=96.04 E-value=0.17 Score=61.35 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc-----cchHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~---------------~~-----G~~e~~I~~lF~~ 998 (1211)
++.-++++|++|+|||+++..+|..+ |..+..+++...... ++ .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999888887654 566666665422110 01 1123334445556
Q ss_pred HHhcCCcEEEEccchhh
Q 000950 999 ASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 999 A~k~~PsILfIDEID~L 1015 (1211)
++.....+|+||=.-++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999988655
No 381
>PRK14531 adenylate kinase; Provisional
Probab=96.03 E-value=0.0064 Score=64.67 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999877653
No 382
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.02 E-value=0.02 Score=67.99 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------cccccchHHHHHHHHHHHHhcCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~s-eL~-----------s~~~G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987762 345554322 111 011121112345566777888999999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99994
No 383
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.01 E-value=0.006 Score=61.35 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 384
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.01 E-value=0.0078 Score=71.83 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=36.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
.++++.||+|||||+|+.+++... | -.++.+.|+... .. ..+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 589999999999999999997762 3 122222322211 11 11111 123479999999876
No 385
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.00 E-value=0.057 Score=60.63 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~ 977 (1211)
+..-++|.|+||+|||+++..++..+ +.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887653 667766665
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.99 E-value=0.032 Score=60.60 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=40.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEeccc-cccc--cccchHHHHHHHHHHHHhcC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e-----lg~~fi-------------~I~~se-L~s~--~~G~~e~~I~~lF~~A~k~~ 1003 (1211)
+-++|.||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 1000 01111134555666655457
Q ss_pred CcEEEEccch
Q 000950 1004 PSVVFVDEVD 1013 (1211)
Q Consensus 1004 PsILfIDEID 1013 (1211)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999974
No 387
>PRK10536 hypothetical protein; Provisional
Probab=95.99 E-value=0.055 Score=61.13 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=31.2
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
+..|.+.......+...+.. ..-+++.||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455565666555554431 126899999999999999999875
No 388
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.99 E-value=0.014 Score=56.29 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
+++|+||+|+|||+++..++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 389
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.98 E-value=0.026 Score=69.26 Aligned_cols=93 Identities=19% Similarity=0.331 Sum_probs=60.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-c
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~g-ILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s-e 979 (1211)
..++++++-.++..+.+++++.. + .| +|++||+|+|||++..++..++. .+++.+.-+ +
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~-~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------P-HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------C-CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 34678888778888888776541 2 34 79999999999999998877763 345554321 1
Q ss_pred cc-----ccccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 980 IT-----SKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 980 L~-----s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
+. ...+. ............+.++.|.||+|.||-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 00011 111233445566778899999999994
No 390
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.98 E-value=0.28 Score=56.34 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEec
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISM 977 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg------~~fi~I~~ 977 (1211)
.++..|-|+|+=|+|||++.+.+-+++. ..++.+++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 3557799999999999999999987773 33555554
No 391
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.98 E-value=0.006 Score=64.58 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
|+|+|+||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998776554
No 392
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.96 E-value=0.024 Score=74.89 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=88.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccc----h---HHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGE----G---EKYVKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~--s~~~G~----~---e~~I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
.+||.||+.+|||+....+|.+.|..|++||-.+.. ..|+|. . -..-.++.-.|.+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 499999999999999999999999999999965421 123322 1 112233445555433 46889999632
Q ss_pred cCCCCCchHHHHHHHHHhhhhhccCCc-------ccCCccEEEEEecCCCC------CCcHHHHhccCcccccCCCCHHH
Q 000950 1017 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 1083 (1211)
Q Consensus 1017 ~~r~s~~~~e~l~~il~~LL~~ldgl~-------~k~~~~VlVIaTTN~p~------~Ld~aLlrRF~~~I~v~lPd~ee 1083 (1211)
....-+++++++. .-+.+. -.+...+++.||.|+|. -|..+++.|| ..++|.--..++
T Consensus 968 ----pTDVLEaLNRLLD----DNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVLEALNRLLD----DNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHHHHHHHhhc----cccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 1122334444332 222111 12346788888889874 5778999999 667777777788
Q ss_pred HHHHHHHHH
Q 000950 1084 REKIIRVIL 1092 (1211)
Q Consensus 1084 R~eILk~lL 1092 (1211)
...||+..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 888877543
No 393
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=95.95 E-value=0.045 Score=65.84 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=92.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----cccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKW 984 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i-~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~----~seL~s~~ 984 (1211)
.|.|.+++|+.+.-++.-.-++ .+- .++ .+.--+|||.|.|||-|+-|.+-+-+-.-.-++.-- ++.|....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK--~Lp-Dg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV 408 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRK--RLP-DGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASV 408 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccc--cCC-CcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeE
Confidence 4788999999987765421111 010 111 111234999999999999999988665533222210 00111000
Q ss_pred ccch---HHHHH-HHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHH--hhhhhccCCcccCCccEEEEEecCC
Q 000950 985 FGEG---EKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 985 ~G~~---e~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~--~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
...+ +-++. +..-+| ..+|+.|||+|.+- ....-+....++ +.-..-.|+...-+.+.-|+|++|+
T Consensus 409 ~RD~~tReFylEGGAMVLA---DgGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLA---DGGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EecCCcceEEEecceEEEe---cCCEEEeehhhccC-----chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 0000 00000 011122 24899999999982 222222222222 2223334565555678889999987
Q ss_pred CC-------------CCcHHHHhccCcccccCCCCHHHH-HHHHHHH
Q 000950 1059 PF-------------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVI 1091 (1211)
Q Consensus 1059 p~-------------~Ld~aLlrRF~~~I~v~lPd~eeR-~eILk~l 1091 (1211)
+. ++.+.+++||+.++.+..--.++| ..|.++.
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHh
Confidence 42 344899999999888876544444 3344443
No 394
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.091 Score=58.78 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=93.9
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccc---cccccchHHHHHHHHHHHHhc----CCcE
Q 000950 944 CKGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSIT---SKWFGEGEKYVKAVFSLASKI----APSV 1006 (1211)
Q Consensus 944 p~gILL~GPpG-TGKT~LArAIA~elg~---------~fi~I~~seL~---s~~~G~~e~~I~~lF~~A~k~----~PsI 1006 (1211)
....||.|..+ +||..++.-+++.+-. .++.+....-. +..+ .-..+|++-..+... ...|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 35799999998 9999999988877632 23333221100 0111 233556655544432 3469
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHH
Q 000950 1007 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 1086 (1211)
Q Consensus 1007 LfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~e 1086 (1211)
++|+++|.|- ....+.++..++. ++..+++|..|..+..+.+.+++|+ ..+.+..|....-.+
T Consensus 93 iII~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999982 2234455555554 3466888888888999999999999 788999999888888
Q ss_pred HHHHHHhhcccCCcccHHHHHHH
Q 000950 1087 IIRVILAKEELASDVDLEGIANM 1109 (1211)
Q Consensus 1087 ILk~lL~k~~l~~dvdL~~LA~~ 1109 (1211)
+...++.... .+.-++-|.+.
T Consensus 156 ~~~~~~~p~~--~~~~l~~i~~~ 176 (263)
T PRK06581 156 LYSQFIQPIA--DNKTLDFINRF 176 (263)
T ss_pred HHHHhccccc--ccHHHHHHHHH
Confidence 7777765432 22234444444
No 395
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.02 Score=63.13 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=47.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecc-ccccccccch-------------HHHHHHHHHHHHhc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGEG-------------EKYVKAVFSLASKI 1002 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el--g------~~fi~I~~s-eL~s~~~G~~-------------e~~I~~lF~~A~k~ 1002 (1211)
.+.||.||||+|||++.+-||.-+ | ..+..++-. ++.+-..|.. .-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 234445532 2322222211 11234466677889
Q ss_pred CCcEEEEccchhh
Q 000950 1003 APSVVFVDEVDSM 1015 (1211)
Q Consensus 1003 ~PsILfIDEID~L 1015 (1211)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 396
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.023 Score=65.48 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-------cccccchHHHHHHHHHHHHhcCCcEEEEcc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1011 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~s-eL~-------s~~~G~~e~~I~~lF~~A~k~~PsILfIDE 1011 (1211)
.++|+.|++|+|||+++++++.... ..++.+.-. ++. .-..+........++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998762 333333211 111 000111111566788888899999999999
Q ss_pred ch
Q 000950 1012 VD 1013 (1211)
Q Consensus 1012 ID 1013 (1211)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 93
No 397
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.94 E-value=0.014 Score=68.45 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=44.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-ccc---------cccccchHHHHHHHHHHHHhcCCcEEEEc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1010 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg----~~fi~I~~s-eL~---------s~~~G~~e~~I~~lF~~A~k~~PsILfID 1010 (1211)
..+||.||+|+|||++.++++..+. ..++.+.-+ ++. ....|.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988763 233333211 111 01112212234556667778899999999
Q ss_pred cch
Q 000950 1011 EVD 1013 (1211)
Q Consensus 1011 EID 1013 (1211)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 993
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.067 Score=63.90 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEeccccc--------cc------cccchHHHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINISMSSIT--------SK------WFGEGEKYVKAVFSLAS 1000 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el-------g~~--fi~I~~seL~--------s~------~~G~~e~~I~~lF~~A~ 1000 (1211)
+..++|+||+|+|||+++..+|..+ +.. ++.+|+.... .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 233 4444442110 00 0111122233333222
Q ss_pred hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccC----ccccc
Q 000950 1001 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1076 (1211)
Q Consensus 1001 k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~----~~I~v 1076 (1211)
..-.+|+||.+.++. .....+.+ +...++.... ....++|+.+|.....+... ..+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~l~e----l~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMKLAE----MKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHHHHH----HHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEE
Confidence 335799999998762 11111222 2222222211 22567888888776666643 34431 23455
Q ss_pred CCCCHHHHHH
Q 000950 1077 NLPDAPNREK 1086 (1211)
Q Consensus 1077 ~lPd~eeR~e 1086 (1211)
.-.|...+.-
T Consensus 320 TKlDet~~~G 329 (388)
T PRK12723 320 TKLDETTCVG 329 (388)
T ss_pred EeccCCCcch
Confidence 5555555433
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.92 E-value=0.0068 Score=61.84 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
++|.|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 400
>PRK14530 adenylate kinase; Provisional
Probab=95.91 E-value=0.0074 Score=65.77 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.||||+|||++++.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 401
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.90 E-value=0.35 Score=56.14 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=67.0
Q ss_pred HHHHHHHHHhc---CCcEEEEccchhhhcCCCC-----CchHHHHHHHHHhhhhhccCCcccCCccEE-EEEecCC---C
Q 000950 992 VKAVFSLASKI---APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---P 1059 (1211)
Q Consensus 992 I~~lF~~A~k~---~PsILfIDEID~L~~~r~s-----~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl-VIaTTN~---p 1059 (1211)
+..++.+.... .|.++-||++..|+....= ..-+.....+...|+..+.+-..-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 44455544432 3667789999999965210 111222334555555554433222223332 2555522 2
Q ss_pred C--CCcHHHHhccC---------------------cccccCCCCHHHHHHHHHHHHhhcccCC----cccHHHHHHHcCC
Q 000950 1060 F--DLDEAVVRRLP---------------------RRLMVNLPDAPNREKIIRVILAKEELAS----DVDLEGIANMADG 1112 (1211)
Q Consensus 1060 ~--~Ld~aLlrRF~---------------------~~I~v~lPd~eeR~eILk~lL~k~~l~~----dvdL~~LA~~T~G 1112 (1211)
. .++.++..+-. ..|.++..+.+|-..+++.+....-+.. ....+.+...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 2 45555554321 1578888899999999999987644332 222344444444
Q ss_pred CcHHHHH
Q 000950 1113 YSGSDLK 1119 (1211)
Q Consensus 1113 ySgaDL~ 1119 (1211)
.++++|.
T Consensus 301 GNp~el~ 307 (309)
T PF10236_consen 301 GNPRELE 307 (309)
T ss_pred CCHHHhc
Confidence 4566654
No 402
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.044 Score=57.34 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg-~~fi~I~~ 977 (1211)
.-|.|.|+||+||||+|+.|+..++ ..++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3478899999999999999999985 44544443
No 403
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.86 E-value=0.036 Score=60.33 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 979 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g------~~fi~I~~se 979 (1211)
+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999997653 3 5667777644
No 404
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.86 E-value=0.047 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTM-LAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~-LArAIA~el 968 (1211)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555544
No 405
>PRK10436 hypothetical protein; Provisional
Probab=95.83 E-value=0.031 Score=68.07 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=60.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc-
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI- 980 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s-eL- 980 (1211)
.++++++-.+...+.+++.+.. +..-||++||+|+||||+..++..+++ .+++.+--+ ++
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 4778888878888888776642 223489999999999998888777763 334443321 11
Q ss_pred ----ccccccc-hHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 981 ----TSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 981 ----~s~~~G~-~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
....++. ........+..+.+..|.||+|.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1001111 11234556667778899999999994
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.82 E-value=0.06 Score=60.78 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
+..-+||+|+||+|||+++..+|.+. |-+++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33558999999999999999886543 556655554
No 407
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.81 E-value=0.077 Score=59.72 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 000950 444 YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 478 (1211)
Q Consensus 444 ~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 478 (1211)
.+....+..+.|||.|||| ....+|||++|+.+
T Consensus 34 ~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l 66 (261)
T TIGR02881 34 EGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLF 66 (261)
T ss_pred cCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHH
Confidence 4445566678899999999 79999999999987
No 408
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.79 E-value=0.0086 Score=66.50 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|+|.||||+|||++|+.+|+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 56999999999999999999999998777654
No 409
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.0077 Score=63.93 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+.|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998877
No 410
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.73 E-value=0.041 Score=60.26 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 979 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~se 979 (1211)
..-+.|+||||+|||+|+..++... +..++.++..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3458999999999999999997543 25677777644
No 411
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.70 E-value=0.011 Score=61.79 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988665
No 412
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.70 E-value=0.0081 Score=62.21 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 413
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.68 E-value=0.074 Score=58.36 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA 965 (1211)
+.++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999997
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.65 E-value=0.056 Score=58.66 Aligned_cols=108 Identities=24% Similarity=0.365 Sum_probs=55.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcE--EEEecccc------------cc-ccc----c-chHHHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANF--INISMSSI------------TS-KWF----G-EGEKYVKAVFSLAS 1000 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~f--i~I~~seL------------~s-~~~----G-~~e~~I~~lF~~A~ 1000 (1211)
|+-++|.||+|+|||+.+..+|.++ +..+ +.+|.... ++ .++ . .....+.+.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999888888766 4443 44443211 00 000 0 12233444555555
Q ss_pred hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 1001 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 1001 k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
...-.+||||=..+. +...+.+..+ ..++..+. +...++|+.++...+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHH
Confidence 444579999987543 2222222222 22332221 224566666666655555
No 415
>PRK06547 hypothetical protein; Provisional
Probab=95.64 E-value=0.012 Score=62.63 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
++.-|+|.|++|+|||++|+.+++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467999999999999999999999988877654
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.59 E-value=0.01 Score=62.58 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998777665543
No 417
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.58 E-value=0.039 Score=68.95 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc----
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS---- 978 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s---- 978 (1211)
.++++++-.....+.+.+++.. +..-||++||+|+|||++..++..+++ .+++.+--+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 4678888888888888876642 223489999999999999988877773 334433221
Q ss_pred --cccccccc-chHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 979 --SITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 979 --eL~s~~~G-~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
.+....+. .........+..+.+..|.||+|.||-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 11110111 111234556677788999999999994
No 418
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.27 Score=58.41 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=35.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcc----cCCcccHHHHHHHcCCCcHHHHHHHHH
Q 000950 1073 RLMVNLPDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNLCV 1123 (1211)
Q Consensus 1073 ~I~v~lPd~eeR~eILk~lL~k~~----l~~dvdL~~LA~~T~GySgaDL~~L~~ 1123 (1211)
.|+++..+.+|-..++.++++..- ...+..++++--+. +.+++.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 478888999999999999987632 22344466666666 556777777764
No 419
>PRK14528 adenylate kinase; Provisional
Probab=95.57 E-value=0.012 Score=62.91 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+.|+|.||||+|||++|+.+++.++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877654
No 420
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.56 E-value=0.032 Score=57.60 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
++|.|+||+|||++|+.++..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999988 66777776543
No 421
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.56 E-value=0.035 Score=64.97 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc-----------cc--ccchHHHHHHHHHHHHhcCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~-seL~s-----------~~--~G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
.+||+.|++|+|||+++++++.... ..++.+.- .++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998874 23333311 11110 00 111122456788888999999999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 422
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.56 E-value=0.32 Score=58.88 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------c-----cccc-----chHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------S-----KWFG-----EGEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~----------s-----~~~G-----~~e~~I~~lF~~A 999 (1211)
++.-|+|+|++|+||||++..+|..+ |..+..+++.... . .+++ .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35669999999999999999998777 6666666653311 0 0111 1112233445555
Q ss_pred HhcCCcEEEEccchhh
Q 000950 1000 SKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L 1015 (1211)
+...-.+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5545678999877644
No 423
>PRK13946 shikimate kinase; Provisional
Probab=95.54 E-value=0.011 Score=62.97 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998776
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.52 E-value=0.013 Score=61.63 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.-|+|.||||+|||++++.+++.+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3689999999999999999999998765433
No 425
>PRK04328 hypothetical protein; Provisional
Probab=95.51 E-value=0.1 Score=58.53 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
+...+||+|+||+|||+|+..++.+. |-+.+.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 44569999999999999998876542 455555543
No 426
>PRK02496 adk adenylate kinase; Provisional
Probab=95.50 E-value=0.013 Score=62.17 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..++|.||||+|||++++.||..++++.+.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 3589999999999999999999999876654
No 427
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.49 E-value=0.03 Score=60.90 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=60.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
.-++|.|+.|+|||++.+.|+.+. +.-+ +.. ... ..... ..... -|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~---~~~--~~~-kd~~~---~l~~~---~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDS---IND--FDD-KDFLE---QLQGK---WIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCc---ccc--CCC-cHHHH---HHHHh---HheeHHHHhhcc-----hhh
Confidence 458999999999999999997662 1111 100 010 11111 11111 588899999873 223
Q ss_pred HHHHHHHHHhhhhhccCCc----ccCCccEEEEEecCCCCCCc-HHHHhccCcccccC
Q 000950 1025 HEAMRKMKNEFMVNWDGLR----TKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~ldgl~----~k~~~~VlVIaTTN~p~~Ld-~aLlrRF~~~I~v~ 1077 (1211)
.+.++.++..-...++... ..-+...++|||||..+-|. +.--||| ..|.+.
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~ 168 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVS 168 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEc
Confidence 3444444443333322211 11235678899999877554 4455677 344443
No 428
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.46 E-value=0.014 Score=61.71 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887763
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.45 E-value=0.15 Score=65.12 Aligned_cols=153 Identities=23% Similarity=0.293 Sum_probs=86.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEec--ccc-----ccc-------cc---c-------------chHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA--GANFINISM--SSI-----TSK-------WF---G-------------EGEKYV 992 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el--g~~fi~I~~--seL-----~s~-------~~---G-------------~~e~~I 992 (1211)
+-+||.-|.|.|||+++...+..+ +..+..+++ ++. .+- +. + ..+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 459999999999999999997633 444444444 331 100 00 1 112245
Q ss_pred HHHHHH-HHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecC-CCC-CCcHHHHhc
Q 000950 993 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF-DLDEAVVRR 1069 (1211)
Q Consensus 993 ~~lF~~-A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN-~p~-~Ld~aLlrR 1069 (1211)
..+|.+ +....|..+|||+.+.+- ++.-++.++.+++ . .+.++.+|.+|. +|. .+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l~fLl~----~-------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEALRFLLK----H-------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHHHHHHH----h-------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 555554 455678999999999872 2333444444333 2 225677777774 332 22211111
Q ss_pred cCcccccCC----CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHH
Q 000950 1070 LPRRLMVNL----PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1116 (1211)
Q Consensus 1070 F~~~I~v~l----Pd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySga 1116 (1211)
+..+++.. -+.+|-.++|+...... .+..++..|-..++|+..+
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSLP--LDAADLKALYDRTEGWAAA 229 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCCC--CChHHHHHHHhhcccHHHH
Confidence 11222222 35777777777654221 2456788888999988553
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.68 Score=56.17 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------ccc-----chHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WFG-----EGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~---------------~~G-----~~e~~I~~lF~~ 998 (1211)
+|.-+++.|++|+|||+++..+|..+ |..+..++|...... ++. .........+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 35679999999999999988887663 566666666432110 010 112334455566
Q ss_pred HHhcCCcEEEEccchhh
Q 000950 999 ASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 999 A~k~~PsILfIDEID~L 1015 (1211)
+......+|+||=..++
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666679999987654
No 431
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.45 E-value=0.023 Score=65.68 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..+...|+|.|.+|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445678999999999999999999999999999554
No 432
>PLN02200 adenylate kinase family protein
Probab=95.42 E-value=0.016 Score=64.46 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.-|+|.|+||+|||++|+.+|..+|+.. +++.++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 345689999999999999999999998754 55556543
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.015 Score=62.24 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
.|+|.||||+||||+|+.|++.++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999665443
No 434
>PF13479 AAA_24: AAA domain
Probab=95.39 E-value=0.06 Score=58.92 Aligned_cols=20 Identities=55% Similarity=1.052 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAV 964 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAI 964 (1211)
-.+||||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46999999999999999888
No 435
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.37 E-value=0.13 Score=56.27 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+..-++|.|+||+|||+++..++... +-+++.++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34568999999999999999887543 6667666653
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.37 E-value=0.036 Score=59.23 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---ccc----------cchHHHHHHHHHHHHhcCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~s-eL~s---~~~----------G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
..++|.||+|+|||+++++++.... ...+.+... ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 223332211 1100 000 11123456677778888999999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+.|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99993
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.37 E-value=0.015 Score=63.35 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766654
No 438
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.061 Score=58.58 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999998
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.35 E-value=0.014 Score=63.42 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
|+|.||||+|||++|+.||..++++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877654
No 440
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.35 E-value=0.094 Score=56.67 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA 965 (1211)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 441
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.30 E-value=0.051 Score=57.57 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.+...++|+||+|+||++|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344569999999999999999999754
No 442
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.015 Score=61.06 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.|-|.|||||||||+|+.||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999875
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.28 E-value=0.014 Score=57.06 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el 968 (1211)
|+|.|+||+||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 444
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.27 E-value=0.063 Score=56.13 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=43.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccc--------cccccc-----hHHHHHHHHHHHHhcCCcEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFGE-----GEKYVKAVFSLASKIAPSVV 1007 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~I~~seL~--------s~~~G~-----~e~~I~~lF~~A~k~~PsIL 1007 (1211)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ...++. ..+.-+-.+..|--..|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456899999999999999999876521 11233322211 000111 11223334556666789999
Q ss_pred EEccchh
Q 000950 1008 FVDEVDS 1014 (1211)
Q Consensus 1008 fIDEID~ 1014 (1211)
++||--.
T Consensus 105 llDEP~~ 111 (163)
T cd03216 105 ILDEPTA 111 (163)
T ss_pred EEECCCc
Confidence 9999853
No 445
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.1 Score=61.96 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=67.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccccc------ccc--------cchHHHHHHHHHHHHhcCCcE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS------KWF--------GEGEKYVKAVFSLASKIAPSV 1006 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el--g~~fi~I~~seL~s------~~~--------G~~e~~I~~lF~~A~k~~PsI 1006 (1211)
|..-+||-|.||.|||||.-.++..+ ..+++++...+-.. +-. --.|..+..+...+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 44559999999999999888877666 23788988765211 111 124567888899999999999
Q ss_pred EEEccchhhhcCC--CCCchHHHHHHHHHhhhhh
Q 000950 1007 VFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 1007 LfIDEID~L~~~r--~s~~~~e~l~~il~~LL~~ 1038 (1211)
++||-|..++... ..++.-...+....+++..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998654 2344444555555555543
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.24 E-value=0.067 Score=56.68 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=42.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEeccccc-----------ccc-------cc--------
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------FG-------- 986 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el-------------g~~fi~I~~seL~-----------s~~-------~G-------- 986 (1211)
-++|+||+|+|||+++..++..+ +.+++.+++..-. ..+ +-
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999887654 2366777654310 000 00
Q ss_pred ----------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcC
Q 000950 987 ----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 987 ----------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 1018 (1211)
.....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455666666 57899999999999765
No 447
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.22 E-value=0.033 Score=62.15 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 980 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL 980 (1211)
|+|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 566777765433
No 448
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.22 E-value=0.13 Score=54.98 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 000950 947 ILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA 965 (1211)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 449
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.21 E-value=0.064 Score=62.48 Aligned_cols=69 Identities=25% Similarity=0.414 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-cccc---cc---cccchHHHHHHHHHHHHhcCCcEEEEccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISM-SSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1012 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~-seL~---s~---~~G~~e~~I~~lF~~A~k~~PsILfIDEI 1012 (1211)
.+++|.|++|+|||+++++++.+. ...++.+.- .++. .. +....+-....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999764 122333221 1111 00 11111234677888899999999999999
Q ss_pred h
Q 000950 1013 D 1013 (1211)
Q Consensus 1013 D 1013 (1211)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 450
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.19 E-value=0.065 Score=62.52 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=46.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccccc------ccccchHHHHHHHHHHHHhcCCcEEEEccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1012 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~-~seL~s------~~~G~~e~~I~~lF~~A~k~~PsILfIDEI 1012 (1211)
.++|+.|++|+|||+++++++... +..++.+. ..++.- .+.....-....++..+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999998876 22333332 112110 011111223567778888999999999999
Q ss_pred h
Q 000950 1013 D 1013 (1211)
Q Consensus 1013 D 1013 (1211)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 451
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.16 E-value=0.12 Score=55.91 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA 965 (1211)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.13 E-value=0.078 Score=55.56 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+++.|+||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998776 6667777764
No 453
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.12 E-value=0.29 Score=57.08 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999999999999998776 455555554
No 454
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.10 E-value=0.43 Score=54.50 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+++-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44668899999999999999998766 5566556543
No 455
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.08 E-value=0.045 Score=57.45 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc---cc----hHHHHHHHHHHHHhc--CCcEEEEcc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF---GE----GEKYVKAVFSLASKI--APSVVFVDE 1011 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~---G~----~e~~I~~lF~~A~k~--~PsILfIDE 1011 (1211)
.-|+|+|.+|+|||+||+++.+.+ +.+++.++...+...+. +. -...++.+...|+.. +..++++.=
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~ 81 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAF 81 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 458999999999999999998887 88999999866543321 11 134556665555433 234555443
No 456
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.07 E-value=0.058 Score=58.20 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 983 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~seL~s~ 983 (1211)
|.-++|.|+||+|||+++..+...+ +..++.|+..++...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 4679999999999999999999988 778888987765543
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.07 E-value=0.064 Score=64.04 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4599999999999999999998763
No 458
>PRK04040 adenylate kinase; Provisional
Probab=95.07 E-value=0.023 Score=61.20 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA--GANFI 973 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el--g~~fi 973 (1211)
+.-|+|+|+||+|||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3569999999999999999999999 55554
No 459
>PRK14527 adenylate kinase; Provisional
Probab=94.98 E-value=0.021 Score=61.11 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+.-|+++||||+|||++|+.+++.+++..+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998765543
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.97 E-value=0.13 Score=63.30 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc----------------------chHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEKY 991 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~G----------------------~~e~~ 991 (1211)
+...+||.||||+|||+|+..++... |-+.+++...+-... .+| ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 44569999999999999999987755 556666665331000 000 11456
Q ss_pred HHHHHHHHHhcCCcEEEEccchhhh
Q 000950 992 VKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 992 I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
+..+.+.+....|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7777788888889999999999874
No 461
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.96 E-value=0.037 Score=64.03 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=46.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEec-ccccc---cc----c-----cchHHHHHHHHHHHHhcCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~-seL~s---~~----~-----G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
...++|.||+|+|||+++++++..+. ...+.+.- .++.- .. . +...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 36899999999999999999997763 22233321 11100 00 0 11122456677788889999999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99994
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=94.96 E-value=0.023 Score=59.18 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.|+|.|++|+|||++++.+|+.++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988765
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.95 E-value=0.068 Score=60.87 Aligned_cols=68 Identities=26% Similarity=0.375 Sum_probs=37.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--c-ccc-cchHHHHHHHHH----HHHhcCCcEEEEccchhh
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVFS----LASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~--s-~~~-G~~e~~I~~lF~----~A~k~~PsILfIDEID~L 1015 (1211)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .|. ...|+.++..+. .+-. ...||++|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 8999999999999999998876 5677777744332 1 121 223555555433 2222 3479999998765
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.018 Score=61.07 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|+|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9998887765
No 465
>PRK06696 uridine kinase; Validated
Probab=94.89 E-value=0.06 Score=59.14 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=31.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 981 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~ 981 (1211)
+.-|.|.|++|+||||||+.|+..+ |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3568999999999999999999998 6777777765543
No 466
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.28 Score=58.68 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++.|+|.||+|+|||+++..||..+ +..+..+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3679999999999999999998776 445555554
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.88 E-value=0.034 Score=65.35 Aligned_cols=70 Identities=21% Similarity=0.406 Sum_probs=46.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-ccccc-------c-c----ccchHHHHHHHHHHHHhcCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-SSITS-------K-W----FGEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~--~fi~I~~-seL~s-------~-~----~G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
..+||+.||+|+|||+++++++..... .++.+.- .++.- . + .+...-....++..+.+..|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 357999999999999999999987632 2333221 11110 0 0 011122456788888899999999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 99993
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.87 E-value=0.037 Score=64.99 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 469
>PLN02674 adenylate kinase
Probab=94.85 E-value=0.027 Score=63.17 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+...|+|.||||+||+|+|+.||+.++++++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999998765543
No 470
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.83 E-value=0.14 Score=65.89 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccccc----------------ccccchHHHHHHHHHHHHhcC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e---lg~~fi~I~~seL~s----------------~~~G~~e~~I~~lF~~A~k~~ 1003 (1211)
+..-++|+||+|+|||+|+..++.. .|-.++.++..+-.. ......+..+..+-...+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3355899999999999999765433 366677777544111 011122333333334445557
Q ss_pred CcEEEEccchhhhc
Q 000950 1004 PSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1004 PsILfIDEID~L~~ 1017 (1211)
+.+|+||-|..|++
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999985
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.83 E-value=0.19 Score=54.99 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
.+...++|.|+||+|||+|+..++.+. +-+.+.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344669999999999999999876533 455555554
No 472
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.82 E-value=0.025 Score=58.11 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.7
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 949 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 949 L~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
|.||||+|||++|+.||.++++. .+++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999865 455555443
No 473
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.82 E-value=0.028 Score=66.77 Aligned_cols=113 Identities=21% Similarity=0.323 Sum_probs=67.3
Q ss_pred hhhcccCCCCHHHHHHHHhhhhhhHhhhccC--CCCCCCccccccCchhhhHHHHHhhhhhhhhhhhhhhhhcchhHHHH
Q 000950 815 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSE--APGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEK 892 (1211)
Q Consensus 815 ~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~--~i~~~~kl~id~~sI~~~~~df~~a~~eik~~~~slk~iv~~~e~ek 892 (1211)
-+...++-++-++++.+.++-...|-+.... .+.......+.-+.+++.+ ...|+...+. -
T Consensus 173 ~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvI--------arPPfSd~~E---------I 235 (604)
T COG1855 173 LVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVI--------ARPPFSDRWE---------I 235 (604)
T ss_pred EEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEE--------ecCCCCCceE---------E
Confidence 3445577788899999888877777553211 1112233333333333322 0122221111 0
Q ss_pred hhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 893 KLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 893 ~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..+-| -...+++|..-.+.+++.|.+.. .|||+.||||.||||+|+|+|..+
T Consensus 236 ---TavRP--vvk~~ledY~L~dkl~eRL~era-------------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 236 ---TAVRP--VVKLSLEDYGLSDKLKERLEERA-------------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ---EEEee--eEEechhhcCCCHHHHHHHHhhh-------------------cceEEecCCCCChhHHHHHHHHHH
Confidence 00001 01457788888888888887722 589999999999999999999877
No 474
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.28 Score=59.10 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~ 977 (1211)
.-++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 458999999999999999998654 444544444
No 475
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.82 E-value=0.094 Score=67.44 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=41.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEeccc----cccccccchHHHHHHHHHHH----------HhcCCcE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1006 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g--~~fi~I~~se----L~s~~~G~~e~~I~~lF~~A----------~k~~PsI 1006 (1211)
-++|.|+||||||++++++...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999997655 4 3444333221 11112222223344443221 0123579
Q ss_pred EEEccchhh
Q 000950 1007 VFVDEVDSM 1015 (1211)
Q Consensus 1007 LfIDEID~L 1015 (1211)
|+|||+..+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999999766
No 476
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.78 E-value=0.027 Score=58.26 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
-|.|+|++|+|||++|+.+++.++++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887653
No 477
>PRK01184 hypothetical protein; Provisional
Probab=94.75 E-value=0.027 Score=59.63 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788999887655
No 478
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.75 E-value=0.05 Score=63.49 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
..|.|.|++|+|||+|++.++..++.+++.--..+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~ 197 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE 197 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH
Confidence 47999999999999999999999998886555443
No 479
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.72 E-value=0.19 Score=66.98 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=48.8
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccCcccccCCCCHH
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
-||+|||+..|+.... . ....++..+...= ....|.+|.+|.+|. .+...++.-|..+|.|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~----k-evE~lI~rLAqkG------RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----K-KVEELIARLAQKA------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh----H-HHHHHHHHHHHHh------hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988863211 1 1122222222211 225688888888875 5666677789999999999988
Q ss_pred HHHHHHHH
Q 000950 1083 NREKIIRV 1090 (1211)
Q Consensus 1083 eR~eILk~ 1090 (1211)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 88888754
No 480
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.69 E-value=4.7 Score=48.79 Aligned_cols=205 Identities=23% Similarity=0.255 Sum_probs=113.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc---------------ccccccc-----hHHHHHHHHH
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---------------TSKWFGE-----GEKYVKAVFS 997 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL---------------~s~~~G~-----~e~~I~~lF~ 997 (1211)
.+||.-||+.|=-|+||||.+..+|..+ +..+..+.|... .-.+++. .-...++..+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 3466789999999999999999999887 555555554221 1112222 2345677888
Q ss_pred HHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc--HHHHhccCc-cc
Q 000950 998 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPR-RL 1074 (1211)
Q Consensus 998 ~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~-~I 1074 (1211)
.|+...-.||++|=..++- .+ ..+++++...-+-+. +..-++|+=++.-.+..+ .+|-.+.+. -+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~------id----e~Lm~El~~Ik~~~~--P~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH------ID----EELMDELKEIKEVIN--PDETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHcCCCEEEEeCCCccc------cc----HHHHHHHHHHHhhcC--CCeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 8888888999999988761 11 233444433333332 224455554543322222 333333321 23
Q ss_pred ccCCCCHHHHHHHH---HHHHhh--------cccC--CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000950 1075 MVNLPDAPNREKII---RVILAK--------EELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1141 (1211)
Q Consensus 1075 ~v~lPd~eeR~eIL---k~lL~k--------~~l~--~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~ 1141 (1211)
.+.-.|-+.|---. ++.... +.+. +..+.+.+|.+.=|. +|+..|++.|...--.+-. .+ .
T Consensus 245 IlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM--GDv~sLvEk~~~~~d~e~a--~~--~ 318 (451)
T COG0541 245 ILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM--GDVLSLIEKAEEVVDEEEA--EK--L 318 (451)
T ss_pred EEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc--ccHHHHHHHHHHhhhHHHH--HH--H
Confidence 44555555553211 112111 1221 445678888887553 5999999888743322110 01 0
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1142 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1142 ~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
...... -..+.+||.+.+++++
T Consensus 319 ~~kl~~-------------g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 319 AEKLKK-------------GKFTLEDFLEQLEQMK 340 (451)
T ss_pred HHHHHh-------------CCCCHHHHHHHHHHHH
Confidence 011111 2388999999888765
No 481
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.68 E-value=0.074 Score=60.85 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=45.5
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-c--------c-ccccccchHHHHHHHHHHHHhcCCcEEEE
Q 000950 945 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S--------I-TSKWFGEGEKYVKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~g-ILL~GPpGTGKT~LArAIA~elg----~~fi~I~~s-e--------L-~s~~~G~~e~~I~~lF~~A~k~~PsILfI 1009 (1211)
+| ||++||+|+|||+...++-.+.+ .+.+.+.-+ + + ...-+|..-.........|.+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 45 89999999999998888877774 334444321 1 1 11123333334445556677778999999
Q ss_pred ccchh
Q 000950 1010 DEVDS 1014 (1211)
Q Consensus 1010 DEID~ 1014 (1211)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99854
No 482
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.61 E-value=0.031 Score=58.08 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
|.|+|++|||||+|+++|+.. |++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888763
No 483
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.59 E-value=0.15 Score=59.13 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~se 979 (1211)
.-++|+||||+|||.++..+|... +..+++++...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 458999999999999999998653 33677777654
No 484
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=94.59 E-value=0.024 Score=50.53 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHHhccCccccccchhhhhHHHHHhc
Q 000950 1161 RPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 1197 (1211)
Q Consensus 1161 r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigG 1197 (1211)
.+|+++||..|+++++||++.+ .+..+.+|+..||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999977 6778999999998
No 485
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.58 E-value=0.21 Score=57.16 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=27.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 452 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 452 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
.+-+||+||+| ....+||+++|+.++.++.+++
T Consensus 30 ~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 30 LDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 35589999999 7999999999999887655443
No 486
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.13 Score=53.14 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccccc-------c---c---ccchHHHHHHHHHHHHhcCCcEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITS-------K---W---FGEGEKYVKAVFSLASKIAPSVV 1007 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~--fi~I~~seL~s-------~---~---~G~~e~~I~~lF~~A~k~~PsIL 1007 (1211)
+...+.|.|++|+|||+|+++|+..+... -+.++...+.. . + +..++ ..+-.+..+--..|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEE
Confidence 44568999999999999999998765321 23333322110 0 0 11112 22223444555578999
Q ss_pred EEccchh
Q 000950 1008 FVDEVDS 1014 (1211)
Q Consensus 1008 fIDEID~ 1014 (1211)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999964
No 487
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.57 E-value=0.031 Score=63.65 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~I 975 (1211)
.-|+|.|+||+|||++|+.+++++ ++.++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 358899999999999999999998 5555443
No 488
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.54 E-value=0.18 Score=58.23 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~se 979 (1211)
.-++|+||||+|||+|+..+|... +...++|+..+
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 447999999999999999997653 23678888654
No 489
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.51 E-value=0.062 Score=64.46 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
+.|.|.|++|||||||+++||..+|..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887654
No 490
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.49 E-value=0.038 Score=60.56 Aligned_cols=37 Identities=41% Similarity=0.551 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
-++|+||+|||||.+|-++|+..|.+++..|.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 3799999999999999999999999999999655433
No 491
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.46 E-value=0.1 Score=61.67 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecc-ccccc------------cccchHHHHHHHHHHHHhcCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg------~~fi~I~~s-eL~s~------------~~G~~e~~I~~lF~~A~k~~Ps 1005 (1211)
.-++++||+|+|||+++++++.++. ..++.+.-+ ++.-. ..+............+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 3599999999999999999998762 234333211 11100 0010011234445557788999
Q ss_pred EEEEccch
Q 000950 1006 VVFVDEVD 1013 (1211)
Q Consensus 1006 ILfIDEID 1013 (1211)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999984
No 492
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.45 E-value=0.23 Score=55.09 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 000950 947 ILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~e 967 (1211)
-||.||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998764
No 493
>PRK14526 adenylate kinase; Provisional
Probab=94.40 E-value=0.041 Score=60.40 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.++|+||||+|||++++.||..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999876654
No 494
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.39 E-value=0.031 Score=59.94 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el 968 (1211)
.+|.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998776666554
No 495
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.36 E-value=0.2 Score=57.38 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 979 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el----g-~~fi~I~~se 979 (1211)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3568999999999999999998765 3 5666666543
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.36 E-value=0.047 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el 968 (1211)
+.|.|++|+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.30 E-value=0.14 Score=53.72 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
.-|.|.|+||+|||++|+.++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 468999999999999999999887 44566666543
No 498
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.29 E-value=0.12 Score=61.38 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
...||+||+|+|||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998877
No 499
>PTZ00202 tuzin; Provisional
Probab=94.27 E-value=1.2 Score=54.06 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=45.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
..++.|.+.....|.+.+.. .... .+.-+.|+|++|+|||+|++.++..++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34789999999999887752 1111 224689999999999999999999988776666653
No 500
>PF13245 AAA_19: Part of AAA domain
Probab=94.16 E-value=0.075 Score=49.13 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=17.0
Q ss_pred eEEEEcCCCChHHH-HHHHHHHHh
Q 000950 946 GILLFGPPGTGKTM-LAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~-LArAIA~el 968 (1211)
-+++.||||||||+ +++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46669999999995 556665554
Done!