Query 000950
Match_columns 1211
No_of_seqs 633 out of 3762
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 4.9E-64 1.7E-68 625.1 13.6 547 409-1197 199-763 (806)
2 4b4t_J 26S protease regulatory 100.0 1.3E-41 4.5E-46 394.6 25.4 247 904-1179 143-393 (405)
3 1ypw_A Transitional endoplasmi 100.0 2.3E-43 7.9E-48 444.0 5.6 543 410-1197 200-763 (806)
4 4b4t_H 26S protease regulatory 100.0 1.9E-40 6.6E-45 389.3 25.6 261 903-1193 203-467 (467)
5 4b4t_I 26S protease regulatory 100.0 9.3E-41 3.2E-45 388.8 21.9 251 903-1182 176-430 (437)
6 4b4t_M 26S protease regulatory 100.0 2.7E-40 9.4E-45 388.1 24.4 250 903-1181 175-428 (434)
7 4b4t_L 26S protease subunit RP 100.0 5.5E-40 1.9E-44 385.8 23.0 250 903-1181 175-428 (437)
8 4b4t_K 26S protease regulatory 100.0 1.3E-38 4.5E-43 373.5 25.7 247 904-1179 167-419 (428)
9 3cf2_A TER ATPase, transitiona 100.0 4E-39 1.4E-43 401.6 12.4 287 904-1203 199-487 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.3E-35 4.6E-40 336.6 26.8 290 905-1200 8-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 7E-35 2.4E-39 329.8 24.2 292 904-1201 13-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 3.1E-34 1.1E-38 329.6 24.0 293 903-1201 45-355 (355)
13 2zan_A Vacuolar protein sortin 100.0 2.6E-33 9.1E-38 331.0 23.0 293 902-1200 127-444 (444)
14 3cf0_A Transitional endoplasmi 100.0 1.3E-33 4.5E-38 316.7 19.0 286 905-1196 11-300 (301)
15 3hu3_A Transitional endoplasmi 100.0 3.4E-33 1.2E-37 333.7 20.0 282 905-1200 200-484 (489)
16 3d8b_A Fidgetin-like protein 1 100.0 4.3E-32 1.5E-36 311.6 25.5 276 905-1199 80-356 (357)
17 2x8a_A Nuclear valosin-contain 100.0 3.2E-32 1.1E-36 302.6 20.0 259 905-1182 6-271 (274)
18 3b9p_A CG5977-PA, isoform A; A 100.0 3.4E-31 1.2E-35 294.1 21.0 277 904-1199 16-294 (297)
19 3vfd_A Spastin; ATPase, microt 100.0 1E-30 3.6E-35 302.9 21.6 277 904-1199 110-387 (389)
20 3h4m_A Proteasome-activating n 100.0 6.5E-30 2.2E-34 281.8 24.8 267 905-1200 13-283 (285)
21 2ce7_A Cell division protein F 100.0 2.3E-29 7.8E-34 299.4 25.7 265 903-1197 10-282 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 1.3E-28 4.3E-33 268.5 24.1 244 904-1177 7-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.3E-28 4.4E-33 267.2 17.5 247 905-1181 2-255 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-27 4.5E-32 285.8 20.2 264 904-1197 26-297 (499)
25 2r62_A Cell division protease 99.9 1E-28 3.6E-33 270.1 2.3 252 902-1182 4-260 (268)
26 1ixz_A ATP-dependent metallopr 99.9 3.9E-26 1.3E-30 248.4 22.5 240 903-1172 10-253 (254)
27 1iy2_A ATP-dependent metallopr 99.9 1E-24 3.4E-29 241.1 25.2 239 904-1172 35-277 (278)
28 1ypw_A Transitional endoplasmi 99.9 2.2E-26 7.5E-31 290.0 13.4 286 905-1203 200-487 (806)
29 4b4t_J 26S protease regulatory 99.9 1.5E-22 5.1E-27 235.3 14.2 233 408-875 142-390 (405)
30 4b4t_I 26S protease regulatory 99.9 1.9E-22 6.6E-27 235.2 12.6 234 407-875 175-424 (437)
31 3pxi_A Negative regulator of g 99.9 2.5E-21 8.6E-26 242.6 19.5 211 909-1133 491-728 (758)
32 1r6b_X CLPA protein; AAA+, N-t 99.9 9.7E-21 3.3E-25 237.0 24.4 211 910-1133 459-719 (758)
33 3t15_A Ribulose bisphosphate c 99.9 4.9E-22 1.7E-26 222.5 10.1 175 941-1121 33-223 (293)
34 4b4t_M 26S protease regulatory 99.9 7.3E-22 2.5E-26 232.1 11.2 236 406-876 173-424 (434)
35 4b4t_L 26S protease subunit RP 99.9 1.2E-21 4.2E-26 230.4 12.3 236 407-876 174-424 (437)
36 4b4t_H 26S protease regulatory 99.8 3.2E-21 1.1E-25 226.8 14.8 234 407-875 202-451 (467)
37 4b4t_K 26S protease regulatory 99.8 1.3E-20 4.5E-25 221.2 13.8 216 407-842 165-397 (428)
38 1qvr_A CLPB protein; coiled co 99.8 4.8E-19 1.6E-23 224.8 22.9 209 909-1134 558-824 (854)
39 3syl_A Protein CBBX; photosynt 99.8 2.3E-19 8E-24 199.5 15.3 215 910-1135 32-268 (309)
40 2c9o_A RUVB-like 1; hexameric 99.8 1.3E-20 4.4E-25 223.2 -1.7 201 905-1124 33-262 (456)
41 1ofh_A ATP-dependent HSL prote 99.7 8.3E-18 2.9E-22 186.1 15.4 247 910-1176 16-300 (310)
42 3uk6_A RUVB-like 2; hexameric 99.7 5.4E-17 1.9E-21 184.8 20.7 219 905-1175 40-330 (368)
43 3pfi_A Holliday junction ATP-d 99.7 1.9E-16 6.7E-21 178.6 22.7 200 906-1129 26-234 (338)
44 1d2n_A N-ethylmaleimide-sensit 99.7 6.1E-17 2.1E-21 177.9 15.7 180 942-1128 62-248 (272)
45 1gxc_A CHK2, CDS1, serine/thre 99.7 2.1E-16 7.3E-21 160.8 12.4 110 90-200 26-145 (149)
46 1hqc_A RUVB; extended AAA-ATPa 99.7 9.2E-16 3.1E-20 171.5 18.0 202 906-1129 9-218 (324)
47 3hws_A ATP-dependent CLP prote 99.7 1.9E-16 6.5E-21 181.6 12.4 222 911-1132 17-325 (363)
48 1xwi_A SKD1 protein; VPS4B, AA 99.7 6.8E-16 2.3E-20 175.0 16.8 218 407-843 5-234 (322)
49 3m6a_A ATP-dependent protease 99.7 2.8E-16 9.6E-21 190.2 14.0 231 908-1176 80-342 (543)
50 1lgp_A Cell cycle checkpoint p 99.6 2.8E-16 9.7E-21 153.1 9.2 106 92-200 2-115 (116)
51 2qp9_X Vacuolar protein sortin 99.6 9.3E-16 3.2E-20 176.2 13.3 229 395-843 33-272 (355)
52 2chg_A Replication factor C sm 99.6 2.9E-14 9.9E-19 148.0 22.5 183 906-1126 14-208 (226)
53 3eie_A Vacuolar protein sortin 99.6 8.9E-16 3.1E-20 173.5 11.9 219 407-844 11-240 (322)
54 2v1u_A Cell division control p 99.6 3.1E-14 1E-18 161.6 23.0 202 908-1129 18-256 (387)
55 2z4s_A Chromosomal replication 99.6 1.1E-14 3.8E-19 171.9 19.8 199 905-1129 101-313 (440)
56 4fcw_A Chaperone protein CLPB; 99.6 7.8E-15 2.7E-19 163.0 17.4 215 910-1134 18-283 (311)
57 3pvs_A Replication-associated 99.6 7.2E-15 2.4E-19 174.0 18.1 182 906-1128 23-221 (447)
58 3bos_A Putative DNA replicatio 99.6 3.6E-14 1.2E-18 150.3 21.6 205 905-1173 24-241 (242)
59 1l8q_A Chromosomal replication 99.6 2.8E-14 9.7E-19 160.6 21.8 196 905-1128 7-214 (324)
60 1njg_A DNA polymerase III subu 99.6 3.6E-14 1.2E-18 148.6 20.0 184 906-1126 20-232 (250)
61 1g41_A Heat shock protein HSLU 99.6 2.1E-14 7.1E-19 169.4 20.2 180 910-1089 16-346 (444)
62 1jbk_A CLPB protein; beta barr 99.6 1.7E-15 5.7E-20 153.7 9.5 158 906-1088 19-194 (195)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 1.2E-14 4E-19 182.2 18.5 225 906-1176 183-434 (758)
64 1g8p_A Magnesium-chelatase 38 99.6 2.1E-14 7.3E-19 161.9 17.9 167 905-1092 20-232 (350)
65 2r44_A Uncharacterized protein 99.6 1E-14 3.5E-19 164.4 15.3 161 908-1094 26-200 (331)
66 2qby_B CDC6 homolog 3, cell di 99.6 7.2E-14 2.5E-18 159.4 21.2 194 909-1129 20-252 (384)
67 2zan_A Vacuolar protein sortin 99.6 4.3E-15 1.5E-19 175.6 10.9 229 395-843 116-356 (444)
68 3pxg_A Negative regulator of g 99.6 1E-14 3.6E-19 173.4 14.1 182 906-1127 177-383 (468)
69 3u61_B DNA polymerase accessor 99.5 5.6E-14 1.9E-18 157.8 17.5 184 906-1126 23-220 (324)
70 1um8_A ATP-dependent CLP prote 99.5 4.2E-14 1.4E-18 162.7 15.1 223 910-1132 22-342 (376)
71 2x8a_A Nuclear valosin-contain 99.5 3E-14 1E-18 158.2 12.0 99 774-876 162-266 (274)
72 2p65_A Hypothetical protein PF 99.5 2.4E-14 8.2E-19 145.4 10.0 150 906-1080 19-187 (187)
73 2qby_A CDC6 homolog 1, cell di 99.5 4.1E-13 1.4E-17 152.1 21.1 201 907-1129 18-252 (386)
74 1qvr_A CLPB protein; coiled co 99.5 5.5E-14 1.9E-18 178.6 14.5 199 906-1129 167-392 (854)
75 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.3E-17 148.9 23.7 201 908-1130 16-255 (389)
76 1sxj_D Activator 1 41 kDa subu 99.5 3.9E-13 1.3E-17 151.6 19.1 185 905-1127 33-240 (353)
77 3hu3_A Transitional endoplasmi 99.5 4.9E-14 1.7E-18 168.6 11.1 185 650-917 286-485 (489)
78 1sxj_A Activator 1 95 kDa subu 99.5 1.6E-13 5.3E-18 165.1 15.4 204 906-1125 36-255 (516)
79 3pxi_A Negative regulator of g 99.5 8.6E-14 2.9E-18 174.5 13.0 183 906-1128 177-384 (758)
80 3te6_A Regulatory protein SIR3 99.5 6.2E-13 2.1E-17 150.9 18.4 160 911-1095 22-214 (318)
81 2bjv_A PSP operon transcriptio 99.5 2E-13 6.8E-18 149.2 13.8 201 906-1127 3-238 (265)
82 3b9p_A CG5977-PA, isoform A; A 99.5 5.3E-13 1.8E-17 147.8 16.9 257 397-876 5-274 (297)
83 1in4_A RUVB, holliday junction 99.5 3E-12 1E-16 145.5 22.6 201 906-1129 22-230 (334)
84 3cf0_A Transitional endoplasmi 99.4 3.5E-14 1.2E-18 159.1 5.5 217 408-844 9-241 (301)
85 2chq_A Replication factor C sm 99.4 1E-12 3.4E-17 145.7 16.9 188 905-1126 13-208 (319)
86 1ojl_A Transcriptional regulat 99.4 2E-13 7E-18 153.6 10.9 199 910-1129 3-235 (304)
87 1iqp_A RFCS; clamp loader, ext 99.4 2E-12 6.9E-17 143.7 18.7 189 905-1127 21-217 (327)
88 1g6g_A Protein kinase RAD53; b 99.4 4.1E-13 1.4E-17 133.0 11.7 101 91-195 2-119 (127)
89 2jqj_A DNA damage response pro 99.4 4.8E-13 1.6E-17 136.4 12.5 110 87-200 11-126 (151)
90 1sxj_B Activator 1 37 kDa subu 99.4 1.7E-12 5.8E-17 144.1 18.0 183 906-1126 18-213 (323)
91 2c9o_A RUVB-like 1; hexameric 99.4 3.3E-13 1.1E-17 159.8 12.2 127 1005-1175 297-437 (456)
92 1jr3_A DNA polymerase III subu 99.4 2.6E-12 9E-17 145.9 18.5 185 906-1127 13-226 (373)
93 3d8b_A Fidgetin-like protein 1 99.4 1.5E-12 5.2E-17 149.4 16.5 246 409-876 79-336 (357)
94 3vfd_A Spastin; ATPase, microt 99.4 1.9E-12 6.7E-17 149.9 12.5 231 395-845 97-339 (389)
95 1sxj_E Activator 1 40 kDa subu 99.3 8.8E-12 3E-16 141.1 16.0 188 905-1127 10-242 (354)
96 2ce7_A Cell division protein F 99.3 4E-12 1.4E-16 151.5 13.8 127 650-842 97-239 (476)
97 3f9v_A Minichromosome maintena 99.3 4.1E-13 1.4E-17 164.3 4.6 173 910-1094 296-492 (595)
98 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 3.4E-12 1.1E-16 153.1 10.3 160 910-1092 23-196 (500)
99 3i6u_A CDS1, serine/threonine- 99.3 7.1E-12 2.4E-16 146.2 11.0 109 90-199 6-124 (419)
100 3h4m_A Proteasome-activating n 99.3 1.2E-11 4.1E-16 136.0 12.1 73 408-487 11-84 (285)
101 1lv7_A FTSH; alpha/beta domain 99.3 2.9E-11 9.9E-16 131.5 14.9 126 651-842 94-235 (257)
102 4h87_A Kanadaptin; FHA domain 99.3 1.4E-11 4.7E-16 122.8 10.6 86 106-194 34-129 (130)
103 1sxj_C Activator 1 40 kDa subu 99.2 1.5E-10 5.1E-15 131.3 19.7 174 905-1115 21-206 (340)
104 3n70_A Transport activator; si 99.2 6.8E-12 2.3E-16 125.7 7.5 132 910-1080 2-143 (145)
105 3co5_A Putative two-component 99.2 2.8E-12 9.5E-17 128.3 3.2 132 910-1080 5-141 (143)
106 2pie_A E3 ubiquitin-protein li 99.2 2.9E-11 1E-15 121.4 10.2 105 90-199 6-120 (138)
107 2qz4_A Paraplegin; AAA+, SPG7, 99.2 4.5E-11 1.5E-15 129.3 11.8 72 410-489 2-74 (262)
108 1g3g_A Protien kinase SPK1; FH 99.2 9.5E-11 3.3E-15 121.1 13.0 103 90-196 29-148 (164)
109 2dhr_A FTSH; AAA+ protein, hex 99.2 3E-11 1E-15 144.9 9.7 67 774-842 185-254 (499)
110 1a5t_A Delta prime, HOLB; zinc 99.2 5.5E-10 1.9E-14 126.9 18.7 165 914-1115 7-199 (334)
111 3k1j_A LON protease, ATP-depen 99.1 2E-10 6.8E-15 140.8 14.9 222 906-1174 38-374 (604)
112 3va4_A Mediator of DNA damage 99.1 1.2E-10 4E-15 116.4 10.0 102 89-196 19-126 (132)
113 1qu5_A Protein kinase SPK1; FH 99.1 7.3E-11 2.5E-15 123.9 7.8 104 90-194 22-145 (182)
114 2r62_A Cell division protease 99.1 2.6E-11 8.8E-16 132.3 4.6 66 774-841 167-235 (268)
115 1w5s_A Origin recognition comp 99.1 1.6E-09 5.4E-14 124.5 18.7 205 909-1129 22-273 (412)
116 1uht_A Expressed protein; FHA 99.1 2.6E-10 8.9E-15 111.3 9.8 94 89-187 7-105 (118)
117 1dmz_A Protein (protein kinase 99.0 4.7E-10 1.6E-14 115.2 9.6 89 105-194 18-121 (158)
118 3po8_A RV0020C protein, putati 99.0 7E-10 2.4E-14 105.2 9.9 74 104-185 15-89 (100)
119 3hx1_A SLR1951 protein; P74513 99.0 5.2E-10 1.8E-14 111.5 9.3 79 106-188 24-109 (131)
120 2gno_A DNA polymerase III, gam 99.0 3.7E-09 1.3E-13 119.3 16.9 142 913-1092 1-152 (305)
121 3cmw_A Protein RECA, recombina 99.0 3.6E-10 1.2E-14 150.4 9.9 153 903-1058 1014-1217(1706)
122 2csw_A Ubiquitin ligase protei 99.0 4.4E-10 1.5E-14 113.8 7.4 104 90-198 14-127 (145)
123 1ny5_A Transcriptional regulat 99.0 1.5E-09 5E-14 126.2 12.8 198 910-1128 138-369 (387)
124 1ixz_A ATP-dependent metallopr 99.0 6E-10 2.1E-14 120.9 8.9 67 774-842 170-239 (254)
125 2xt9_B Putative signal transdu 99.0 1.8E-09 6.2E-14 105.0 11.3 86 103-199 22-108 (115)
126 3els_A PRE-mRNA leakage protei 99.0 1E-09 3.5E-14 112.7 10.0 88 106-194 49-156 (158)
127 3vlf_B 26S protease regulatory 99.0 9.1E-10 3.1E-14 102.3 8.6 87 1080-1193 2-88 (88)
128 1r21_A Antigen KI-67; beta san 99.0 4.9E-10 1.7E-14 111.0 7.0 98 89-196 7-108 (128)
129 2krk_A 26S protease regulatory 99.0 7.6E-10 2.6E-14 102.6 6.8 78 1075-1178 7-84 (86)
130 3kw6_A 26S protease regulatory 98.9 1.4E-09 4.9E-14 98.3 8.2 75 1077-1177 1-75 (78)
131 2kb3_A Oxoglutarate dehydrogen 98.9 2.5E-09 8.5E-14 108.2 10.5 82 105-197 59-141 (143)
132 1mzk_A Kinase associated prote 98.9 1.9E-09 6.5E-14 108.3 8.9 79 113-197 33-120 (139)
133 2kfu_A RV1827 PThr 22; FHA dom 98.9 1.3E-08 4.4E-13 105.0 15.1 82 105-197 68-150 (162)
134 2jpe_A Nuclear inhibitor of pr 98.9 5E-10 1.7E-14 112.6 4.6 85 106-194 48-135 (140)
135 1iy2_A ATP-dependent metallopr 98.9 5.1E-09 1.7E-13 115.5 11.7 67 774-842 194-263 (278)
136 3elv_A PRE-mRNA leakage protei 98.8 7.6E-09 2.6E-13 110.0 10.2 81 106-187 96-193 (205)
137 3dzd_A Transcriptional regulat 98.8 4.2E-09 1.4E-13 121.7 9.0 198 910-1128 130-360 (368)
138 3aji_B S6C, proteasome (prosom 98.8 4.4E-09 1.5E-13 96.2 7.1 75 1080-1180 2-76 (83)
139 3gqs_A Adenylate cyclase-like 98.8 1E-08 3.4E-13 98.3 8.9 80 106-194 18-100 (106)
140 4ejq_A Kinesin-like protein KI 98.8 1.5E-08 5E-13 103.7 10.6 94 97-195 41-143 (154)
141 3oun_A Putative uncharacterize 98.8 9E-09 3.1E-13 105.5 8.6 73 105-185 78-151 (157)
142 1wln_A Afadin; beta sandwich, 98.8 1.9E-08 6.4E-13 98.6 9.7 80 107-195 31-113 (120)
143 4akg_A Glutathione S-transfera 98.7 2E-08 7E-13 139.0 12.8 138 945-1094 1268-1433(2695)
144 2ff4_A Probable regulatory pro 98.7 2.7E-08 9.1E-13 115.7 11.6 95 90-195 285-380 (388)
145 3fm8_A Kinesin-like protein KI 98.7 8E-08 2.7E-12 95.0 11.4 99 87-193 21-121 (124)
146 3t15_A Ribulose bisphosphate c 98.7 1.4E-08 4.7E-13 113.6 6.2 101 662-830 97-222 (293)
147 3uv0_A Mutator 2, isoform B; F 98.6 1.3E-07 4.6E-12 89.0 10.2 69 104-180 12-81 (102)
148 3ec2_A DNA replication protein 98.6 4.4E-08 1.5E-12 100.7 7.4 98 905-1015 6-112 (180)
149 2kjq_A DNAA-related protein; s 98.6 1.7E-07 5.7E-12 94.9 11.1 107 943-1077 35-146 (149)
150 2fna_A Conserved hypothetical 98.6 1.4E-06 4.9E-11 97.3 19.4 185 907-1124 11-252 (357)
151 3f8t_A Predicted ATPase involv 98.6 1.6E-07 5.5E-12 111.1 11.8 152 911-1083 215-385 (506)
152 3kt9_A Aprataxin; FHA domain, 98.6 2.2E-07 7.5E-12 88.7 10.1 95 94-194 4-99 (102)
153 2brf_A Bifunctional polynucleo 98.6 1.7E-07 5.7E-12 90.5 9.1 95 94-194 9-105 (110)
154 2w58_A DNAI, primosome compone 98.5 1.5E-07 5.3E-12 98.1 8.9 69 945-1015 55-127 (202)
155 2qen_A Walker-type ATPase; unk 98.5 3.2E-06 1.1E-10 94.3 19.6 189 907-1124 10-248 (350)
156 2dzn_B 26S protease regulatory 98.4 4.8E-08 1.7E-12 89.3 2.2 73 1082-1180 1-74 (82)
157 1yj5_C 5' polynucleotide kinas 98.4 7.5E-07 2.6E-11 89.0 9.7 99 91-195 6-106 (143)
158 2krk_A 26S protease regulatory 98.4 1.7E-07 5.7E-12 86.8 4.1 75 785-875 8-82 (86)
159 1ujx_A Polynucleotide kinase 3 98.3 4.8E-07 1.6E-11 88.4 6.0 97 92-194 14-112 (119)
160 2vhj_A Ntpase P4, P4; non- hyd 98.3 4.2E-07 1.4E-11 103.2 4.7 112 945-1065 124-241 (331)
161 4akg_A Glutathione S-transfera 98.2 3.1E-06 1.1E-10 117.7 13.5 132 945-1089 646-790 (2695)
162 2r2a_A Uncharacterized protein 98.2 1E-06 3.6E-11 93.5 7.0 127 945-1082 6-156 (199)
163 3kw6_A 26S protease regulatory 98.2 8.5E-07 2.9E-11 80.1 4.3 55 786-842 1-56 (78)
164 2qgz_A Helicase loader, putati 98.1 1.7E-06 5.7E-11 97.6 6.3 70 944-1015 152-226 (308)
165 4egx_A Kinesin-like protein KI 98.1 7.4E-06 2.5E-10 86.1 10.5 94 97-195 71-173 (184)
166 3vlf_B 26S protease regulatory 98.1 2E-06 6.9E-11 79.7 5.0 70 789-875 2-72 (88)
167 3aji_B S6C, proteasome (prosom 98.0 3.6E-06 1.2E-10 76.8 4.7 72 789-876 2-73 (83)
168 1tue_A Replication protein E1; 97.9 1.6E-05 5.4E-10 85.1 7.1 30 945-974 59-88 (212)
169 3syl_A Protein CBBX; photosynt 97.8 5.1E-05 1.8E-09 83.9 11.1 125 664-844 130-267 (309)
170 3vkg_A Dynein heavy chain, cyt 97.8 3.9E-05 1.3E-09 107.7 11.1 140 945-1094 1305-1471(3245)
171 3cmu_A Protein RECA, recombina 97.7 3.9E-05 1.3E-09 104.0 9.6 114 941-1056 1424-1561(2050)
172 3vkg_A Dynein heavy chain, cyt 97.7 0.00012 4.2E-09 102.8 14.4 131 945-1088 605-749 (3245)
173 1u0j_A DNA replication protein 97.7 5.6E-05 1.9E-09 83.8 8.2 126 944-1091 104-250 (267)
174 2dzn_B 26S protease regulatory 97.6 3.1E-05 1.1E-09 70.6 4.1 68 791-874 1-68 (82)
175 1g41_A Heat shock protein HSLU 97.6 3.9E-05 1.3E-09 90.7 5.7 68 422-492 21-88 (444)
176 3huf_A DNA repair and telomere 97.6 0.00016 5.5E-09 81.1 9.8 81 106-188 15-107 (325)
177 3uk6_A RUVB-like 2; hexameric 97.6 8.9E-05 3E-09 84.1 7.9 140 649-842 172-313 (368)
178 1d2n_A N-ethylmaleimide-sensit 97.5 0.00014 4.8E-09 79.5 8.1 36 450-487 62-97 (272)
179 1ye8_A Protein THEP1, hypothet 97.5 0.00045 1.6E-08 71.7 11.4 28 946-973 2-29 (178)
180 1jr3_D DNA polymerase III, del 97.5 0.00097 3.3E-08 75.4 14.6 155 945-1125 19-188 (343)
181 4a0e_A YSCD, type III secretio 97.5 0.00022 7.7E-09 70.0 7.8 76 103-186 15-91 (123)
182 1wv3_A Similar to DNA segregat 97.3 0.0002 6.9E-09 78.1 6.5 68 109-184 89-160 (238)
183 3m6a_A ATP-dependent protease 97.3 0.00021 7.2E-09 86.6 6.5 35 451-487 107-141 (543)
184 1z6t_A APAF-1, apoptotic prote 97.1 0.004 1.4E-07 75.3 15.4 172 909-1122 124-328 (591)
185 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0033 1.1E-07 65.7 12.5 74 943-1016 22-136 (235)
186 1svm_A Large T antigen; AAA+ f 97.0 0.00029 9.8E-09 81.8 3.9 113 942-1076 167-282 (377)
187 2cvh_A DNA repair and recombin 96.9 0.0027 9.2E-08 66.2 10.1 38 942-979 18-55 (220)
188 1xp8_A RECA protein, recombina 96.9 0.0025 8.7E-08 73.6 10.7 75 943-1017 73-166 (366)
189 3hr8_A Protein RECA; alpha and 96.9 0.0026 9E-08 73.2 10.6 75 943-1017 60-153 (356)
190 2zr9_A Protein RECA, recombina 96.8 0.0035 1.2E-07 72.0 10.7 75 943-1017 60-153 (349)
191 1n0w_A DNA repair protein RAD5 96.8 0.0024 8.3E-08 67.6 8.8 75 943-1017 23-133 (243)
192 1qhx_A CPT, protein (chloramph 96.8 0.0019 6.5E-08 65.4 7.2 34 945-978 4-37 (178)
193 3sfz_A APAF-1, apoptotic pepti 96.8 0.016 5.4E-07 75.3 17.4 173 909-1121 124-327 (1249)
194 2r8r_A Sensor protein; KDPD, P 96.7 0.02 6.7E-07 62.1 14.6 33 945-977 7-42 (228)
195 3pxg_A Negative regulator of g 96.7 0.00063 2.2E-08 80.9 3.3 47 650-708 256-302 (468)
196 3dm5_A SRP54, signal recogniti 96.7 0.036 1.2E-06 65.5 17.9 204 943-1176 99-341 (443)
197 1ofh_A ATP-dependent HSL prote 96.7 0.0031 1E-07 69.2 8.3 67 422-491 21-87 (310)
198 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.4E-08 68.0 3.8 33 944-976 5-37 (185)
199 2orw_A Thymidine kinase; TMTK, 96.6 0.0023 7.9E-08 66.7 6.4 30 946-975 5-37 (184)
200 1u94_A RECA protein, recombina 96.5 0.0083 2.8E-07 69.1 10.9 75 943-1017 62-155 (356)
201 3cmu_A Protein RECA, recombina 96.5 0.0036 1.2E-07 85.4 8.8 77 941-1017 729-824 (2050)
202 2b8t_A Thymidine kinase; deoxy 96.5 0.013 4.5E-07 63.2 11.4 70 945-1015 13-101 (223)
203 3pfi_A Holliday junction ATP-d 96.4 0.017 5.7E-07 64.7 12.3 62 412-487 27-88 (338)
204 2z43_A DNA repair and recombin 96.4 0.005 1.7E-07 69.5 8.0 75 943-1017 106-217 (324)
205 1jbk_A CLPB protein; beta barr 96.4 0.0038 1.3E-07 62.5 6.2 54 649-706 102-160 (195)
206 1v5w_A DMC1, meiotic recombina 96.4 0.0076 2.6E-07 68.7 9.4 75 943-1017 121-233 (343)
207 3vaa_A Shikimate kinase, SK; s 96.4 0.0018 6.2E-08 67.5 3.9 34 943-976 24-57 (199)
208 2iut_A DNA translocase FTSK; n 96.4 0.028 9.5E-07 68.4 14.5 74 1005-1089 345-420 (574)
209 1sxj_A Activator 1 95 kDa subu 96.3 0.014 4.8E-07 70.1 11.7 76 412-491 37-114 (516)
210 3kb2_A SPBC2 prophage-derived 96.3 0.0024 8.2E-08 63.9 4.1 31 946-976 3-33 (173)
211 2dr3_A UPF0273 protein PH0284; 96.3 0.013 4.4E-07 62.0 10.0 36 943-978 22-60 (247)
212 3io5_A Recombination and repai 96.2 0.009 3.1E-07 67.9 8.7 72 946-1017 30-125 (333)
213 2ehv_A Hypothetical protein PH 96.2 0.026 8.9E-07 59.8 11.8 35 943-977 29-67 (251)
214 2iyv_A Shikimate kinase, SK; t 96.2 0.0024 8.3E-08 65.2 3.5 31 946-976 4-34 (184)
215 3iij_A Coilin-interacting nucl 96.1 0.0028 9.5E-08 64.6 3.8 31 945-975 12-42 (180)
216 2p5t_B PEZT; postsegregational 96.1 0.016 5.3E-07 63.0 9.7 38 943-980 31-68 (253)
217 1via_A Shikimate kinase; struc 96.1 0.0039 1.3E-07 63.3 4.4 30 946-975 6-35 (175)
218 2rhm_A Putative kinase; P-loop 96.1 0.0048 1.6E-07 63.1 5.1 32 944-975 5-36 (193)
219 1gvn_B Zeta; postsegregational 96.0 0.015 5.3E-07 64.6 9.4 36 944-979 33-68 (287)
220 1zuh_A Shikimate kinase; alpha 96.0 0.0032 1.1E-07 63.4 3.5 32 945-976 8-39 (168)
221 1y63_A LMAJ004144AAA protein; 96.0 0.0033 1.1E-07 64.8 3.3 32 945-976 11-43 (184)
222 2ius_A DNA translocase FTSK; n 95.9 0.047 1.6E-06 65.7 13.6 74 1006-1090 300-375 (512)
223 2cdn_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 64.5 3.9 32 945-976 21-52 (201)
224 1aky_A Adenylate kinase; ATP:A 95.9 0.0057 1.9E-07 64.5 4.9 33 943-975 3-35 (220)
225 1kag_A SKI, shikimate kinase I 95.9 0.0056 1.9E-07 61.6 4.6 30 945-974 5-34 (173)
226 2c95_A Adenylate kinase 1; tra 95.9 0.0042 1.4E-07 63.7 3.7 33 944-976 9-41 (196)
227 4a74_A DNA repair and recombin 95.9 0.014 4.8E-07 61.1 7.7 37 943-979 24-69 (231)
228 2ze6_A Isopentenyl transferase 95.9 0.0046 1.6E-07 67.4 4.1 32 946-977 3-34 (253)
229 1vma_A Cell division protein F 95.9 0.068 2.3E-06 60.2 13.7 72 943-1014 103-197 (306)
230 1tev_A UMP-CMP kinase; ploop, 95.9 0.0061 2.1E-07 62.1 4.7 31 945-975 4-34 (196)
231 3lw7_A Adenylate kinase relate 95.8 0.0055 1.9E-07 60.8 4.2 29 946-975 3-31 (179)
232 3lda_A DNA repair protein RAD5 95.8 0.018 6.1E-07 67.3 9.1 76 943-1018 177-288 (400)
233 1e6c_A Shikimate kinase; phosp 95.8 0.0062 2.1E-07 61.2 4.4 30 946-975 4-33 (173)
234 3upu_A ATP-dependent DNA helic 95.8 0.015 5.1E-07 68.7 8.3 23 946-968 47-69 (459)
235 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.016 5.3E-07 63.3 7.8 36 945-980 5-43 (260)
236 2a5y_B CED-4; apoptosis; HET: 95.7 0.044 1.5E-06 66.2 12.4 172 912-1121 131-336 (549)
237 3bh0_A DNAB-like replicative h 95.7 0.12 3.9E-06 58.2 14.9 37 942-978 66-105 (315)
238 2zts_A Putative uncharacterize 95.7 0.041 1.4E-06 58.1 10.7 75 943-1017 29-149 (251)
239 2pt5_A Shikimate kinase, SK; a 95.7 0.0055 1.9E-07 61.3 3.6 31 946-976 2-32 (168)
240 1hqc_A RUVB; extended AAA-ATPa 95.7 0.019 6.4E-07 63.6 8.2 33 452-486 38-70 (324)
241 3cm0_A Adenylate kinase; ATP-b 95.7 0.0065 2.2E-07 61.9 4.1 31 945-975 5-35 (186)
242 3t61_A Gluconokinase; PSI-biol 95.7 0.0086 3E-07 62.2 5.0 32 944-975 18-49 (202)
243 2fz4_A DNA repair protein RAD2 95.6 0.034 1.1E-06 59.9 9.7 33 946-978 110-142 (237)
244 2bwj_A Adenylate kinase 5; pho 95.6 0.0055 1.9E-07 62.9 3.4 31 945-975 13-43 (199)
245 3dl0_A Adenylate kinase; phosp 95.6 0.0082 2.8E-07 62.9 4.6 30 946-975 2-31 (216)
246 2vli_A Antibiotic resistance p 95.6 0.0062 2.1E-07 61.8 3.4 29 945-973 6-34 (183)
247 3fb4_A Adenylate kinase; psych 95.6 0.009 3.1E-07 62.5 4.8 30 946-975 2-31 (216)
248 3jvv_A Twitching mobility prot 95.5 0.016 5.6E-07 66.6 7.2 69 945-1013 124-206 (356)
249 1qf9_A UMP/CMP kinase, protein 95.5 0.0092 3.2E-07 60.6 4.6 31 945-975 7-37 (194)
250 1ly1_A Polynucleotide kinase; 95.5 0.0063 2.1E-07 61.3 3.3 29 945-973 3-32 (181)
251 3tlx_A Adenylate kinase 2; str 95.5 0.0099 3.4E-07 64.3 5.0 33 943-975 28-60 (243)
252 1ak2_A Adenylate kinase isoenz 95.5 0.01 3.5E-07 63.4 5.0 32 944-975 16-47 (233)
253 1kht_A Adenylate kinase; phosp 95.5 0.008 2.7E-07 61.1 4.0 25 945-969 4-28 (192)
254 1pzn_A RAD51, DNA repair and r 95.5 0.025 8.4E-07 64.8 8.5 37 943-979 130-175 (349)
255 1ukz_A Uridylate kinase; trans 95.5 0.0074 2.5E-07 62.5 3.8 32 945-976 16-47 (203)
256 1zd8_A GTP:AMP phosphotransfer 95.5 0.0091 3.1E-07 63.3 4.4 32 944-975 7-38 (227)
257 1nlf_A Regulatory protein REPA 95.4 0.048 1.7E-06 59.7 10.3 26 943-968 29-54 (279)
258 2i1q_A DNA repair and recombin 95.4 0.017 5.8E-07 64.8 6.8 75 943-1017 97-218 (322)
259 3e1s_A Exodeoxyribonuclease V, 95.4 0.0085 2.9E-07 73.2 4.6 32 945-976 205-239 (574)
260 2i3b_A HCR-ntpase, human cance 95.4 0.049 1.7E-06 57.0 9.8 23 946-968 3-25 (189)
261 1knq_A Gluconate kinase; ALFA/ 95.4 0.012 4E-07 59.5 4.9 31 944-974 8-38 (175)
262 3cmw_A Protein RECA, recombina 95.4 0.025 8.4E-07 76.5 9.3 76 945-1020 1432-1526(1706)
263 1zp6_A Hypothetical protein AT 95.4 0.0076 2.6E-07 61.6 3.4 37 943-979 8-44 (191)
264 3be4_A Adenylate kinase; malar 95.4 0.0097 3.3E-07 62.9 4.3 31 945-975 6-36 (217)
265 2pbr_A DTMP kinase, thymidylat 95.3 0.014 4.7E-07 59.5 4.9 31 946-976 2-35 (195)
266 1cr0_A DNA primase/helicase; R 95.3 0.06 2.1E-06 59.3 10.4 35 943-977 34-72 (296)
267 3umf_A Adenylate kinase; rossm 95.3 0.013 4.5E-07 62.9 4.9 30 944-973 29-58 (217)
268 3crm_A TRNA delta(2)-isopenten 95.2 0.029 9.9E-07 63.8 7.9 34 945-978 6-39 (323)
269 3sr0_A Adenylate kinase; phosp 95.2 0.013 4.4E-07 62.4 4.7 29 946-974 2-30 (206)
270 4eun_A Thermoresistant glucoki 95.2 0.014 4.9E-07 60.7 4.9 31 943-973 28-58 (200)
271 2r6a_A DNAB helicase, replicat 95.2 0.064 2.2E-06 63.3 11.0 37 942-978 201-241 (454)
272 2pez_A Bifunctional 3'-phospho 95.2 0.018 6.1E-07 58.6 5.4 35 944-978 5-42 (179)
273 1zak_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 62.4 3.9 31 945-975 6-36 (222)
274 1e4v_A Adenylate kinase; trans 95.1 0.014 4.7E-07 61.4 4.6 30 946-975 2-31 (214)
275 2eyu_A Twitching motility prot 95.1 0.031 1.1E-06 61.4 7.4 70 943-1012 24-107 (261)
276 2q6t_A DNAB replication FORK h 95.0 0.093 3.2E-06 61.8 11.5 37 942-978 198-238 (444)
277 2jaq_A Deoxyguanosine kinase; 95.0 0.015 5.2E-07 59.6 4.2 29 946-974 2-30 (205)
278 2v54_A DTMP kinase, thymidylat 94.9 0.017 5.9E-07 59.5 4.5 34 944-977 4-38 (204)
279 1cke_A CK, MSSA, protein (cyti 94.9 0.019 6.4E-07 60.4 4.7 30 945-974 6-35 (227)
280 1nks_A Adenylate kinase; therm 94.9 0.011 3.8E-07 60.0 2.7 32 946-977 3-37 (194)
281 2z0h_A DTMP kinase, thymidylat 94.8 0.022 7.5E-07 58.2 4.9 31 947-977 3-36 (197)
282 2ga8_A Hypothetical 39.9 kDa p 94.8 0.014 4.8E-07 67.2 3.8 30 945-974 25-54 (359)
283 2xb4_A Adenylate kinase; ATP-b 94.8 0.018 6.2E-07 61.2 4.4 30 946-975 2-31 (223)
284 3b6e_A Interferon-induced heli 94.8 0.079 2.7E-06 54.6 9.0 24 945-968 49-72 (216)
285 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.5E-07 60.7 2.9 30 946-976 3-32 (204)
286 2gxq_A Heat resistant RNA depe 94.6 0.13 4.3E-06 53.0 10.2 23 945-967 39-62 (207)
287 3ake_A Cytidylate kinase; CMP 94.6 0.023 7.9E-07 58.6 4.5 31 946-976 4-34 (208)
288 3bgw_A DNAB-like replicative h 94.6 0.29 9.8E-06 57.9 14.3 37 942-978 195-234 (444)
289 3uie_A Adenylyl-sulfate kinase 94.6 0.033 1.1E-06 57.9 5.6 37 943-979 24-63 (200)
290 2ewv_A Twitching motility prot 94.5 0.039 1.3E-06 63.7 6.5 71 943-1013 135-219 (372)
291 2plr_A DTMP kinase, probable t 94.5 0.036 1.2E-06 57.1 5.5 32 945-976 5-38 (213)
292 4fcw_A Chaperone protein CLPB; 94.4 0.13 4.5E-06 56.4 10.2 36 453-490 48-86 (311)
293 4e22_A Cytidylate kinase; P-lo 94.3 0.034 1.2E-06 60.4 5.2 31 944-974 27-57 (252)
294 1g5t_A COB(I)alamin adenosyltr 94.3 0.25 8.6E-06 52.3 11.6 111 946-1072 30-173 (196)
295 2bbw_A Adenylate kinase 4, AK4 94.3 0.028 9.7E-07 60.4 4.4 30 944-973 27-56 (246)
296 2wwf_A Thymidilate kinase, put 94.3 0.013 4.6E-07 60.7 1.8 28 944-971 10-37 (212)
297 3kl4_A SRP54, signal recogniti 94.3 0.099 3.4E-06 61.7 9.3 73 943-1015 96-191 (433)
298 1q57_A DNA primase/helicase; d 94.3 0.15 5.3E-06 60.7 11.1 36 943-978 241-280 (503)
299 3r20_A Cytidylate kinase; stru 94.2 0.032 1.1E-06 60.5 4.8 30 945-974 10-39 (233)
300 1m7g_A Adenylylsulfate kinase; 94.2 0.06 2E-06 56.4 6.7 36 944-979 25-64 (211)
301 1uf9_A TT1252 protein; P-loop, 94.2 0.031 1.1E-06 57.4 4.3 32 944-976 8-39 (203)
302 2grj_A Dephospho-COA kinase; T 94.2 0.023 7.7E-07 59.7 3.3 31 946-976 14-44 (192)
303 1jjv_A Dephospho-COA kinase; P 94.1 0.028 9.6E-07 58.4 3.8 29 946-975 4-32 (206)
304 1p9r_A General secretion pathw 94.1 0.17 5.8E-06 59.4 10.8 92 906-1012 144-245 (418)
305 1vt4_I APAF-1 related killer D 94.0 0.23 7.7E-06 64.5 12.4 43 912-967 131-173 (1221)
306 3nwj_A ATSK2; P loop, shikimat 94.0 0.037 1.3E-06 60.6 4.7 32 945-976 49-80 (250)
307 1nn5_A Similar to deoxythymidy 94.0 0.017 5.7E-07 60.0 1.8 26 944-969 9-34 (215)
308 3a8t_A Adenylate isopentenyltr 94.0 0.022 7.7E-07 65.1 3.0 34 945-978 41-74 (339)
309 4gp7_A Metallophosphoesterase; 94.0 0.15 5E-06 51.9 8.8 19 945-963 10-28 (171)
310 1uj2_A Uridine-cytidine kinase 93.9 0.052 1.8E-06 58.6 5.5 37 945-981 23-67 (252)
311 2yvu_A Probable adenylyl-sulfa 93.9 0.058 2E-06 55.1 5.5 35 943-977 12-49 (186)
312 3pie_A 5'->3' exoribonuclease 93.8 0.033 1.1E-06 71.9 4.2 77 543-629 1050-1126(1155)
313 2px0_A Flagellar biosynthesis 93.7 0.23 7.8E-06 55.5 10.5 36 943-978 104-143 (296)
314 1qde_A EIF4A, translation init 93.7 0.22 7.6E-06 52.0 9.9 60 905-967 13-75 (224)
315 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.047 1.6E-06 62.0 4.9 69 945-1013 172-250 (330)
316 3foz_A TRNA delta(2)-isopenten 93.6 0.039 1.3E-06 62.4 4.1 35 945-979 11-45 (316)
317 1xx6_A Thymidine kinase; NESG, 93.6 0.16 5.5E-06 53.4 8.4 69 945-1015 9-93 (191)
318 2pl3_A Probable ATP-dependent 93.5 0.32 1.1E-05 51.4 10.7 55 905-962 24-80 (236)
319 1q3t_A Cytidylate kinase; nucl 93.5 0.058 2E-06 57.6 5.0 31 944-974 16-46 (236)
320 2h92_A Cytidylate kinase; ross 93.5 0.053 1.8E-06 56.7 4.6 32 945-976 4-35 (219)
321 1vht_A Dephospho-COA kinase; s 93.4 0.058 2E-06 56.6 4.8 30 945-975 5-34 (218)
322 2xau_A PRE-mRNA-splicing facto 93.4 0.23 7.9E-06 62.7 11.0 58 907-967 73-132 (773)
323 1hv8_A Putative ATP-dependent 93.2 0.23 7.9E-06 55.0 9.5 23 945-967 45-67 (367)
324 2qor_A Guanylate kinase; phosp 93.2 0.049 1.7E-06 56.8 3.7 26 944-969 12-37 (204)
325 4a1f_A DNAB helicase, replicat 93.1 0.15 5.3E-06 58.2 8.0 36 942-977 44-82 (338)
326 3d3q_A TRNA delta(2)-isopenten 93.1 0.045 1.5E-06 62.7 3.5 34 945-978 8-41 (340)
327 1ltq_A Polynucleotide kinase; 93.1 0.051 1.8E-06 59.8 3.9 31 945-975 3-34 (301)
328 1t6n_A Probable ATP-dependent 93.0 0.6 2E-05 48.6 11.8 59 906-967 14-74 (220)
329 2f6r_A COA synthase, bifunctio 93.0 0.047 1.6E-06 60.4 3.5 31 944-975 75-105 (281)
330 2qt1_A Nicotinamide riboside k 93.0 0.035 1.2E-06 57.7 2.3 31 944-974 21-52 (207)
331 3zvl_A Bifunctional polynucleo 92.9 0.072 2.5E-06 62.3 4.9 31 944-974 258-288 (416)
332 1vec_A ATP-dependent RNA helic 92.8 0.24 8.3E-06 50.8 8.3 18 945-962 41-58 (206)
333 3llm_A ATP-dependent RNA helic 92.8 0.41 1.4E-05 50.9 10.3 21 945-965 77-97 (235)
334 3exa_A TRNA delta(2)-isopenten 92.7 0.057 1.9E-06 61.3 3.6 34 945-978 4-37 (322)
335 3fdi_A Uncharacterized protein 92.6 0.072 2.5E-06 56.1 4.1 29 946-974 8-36 (201)
336 2bdt_A BH3686; alpha-beta prot 92.6 0.075 2.6E-06 54.4 4.0 31 946-977 4-34 (189)
337 2z4s_A Chromosomal replication 92.6 0.18 6.1E-06 59.4 7.8 116 664-840 194-314 (440)
338 2oap_1 GSPE-2, type II secreti 92.6 0.083 2.8E-06 63.6 5.0 69 945-1013 261-343 (511)
339 3eph_A TRNA isopentenyltransfe 92.4 0.073 2.5E-06 62.3 4.1 33 945-977 3-35 (409)
340 3hws_A ATP-dependent CLP prote 92.4 0.16 5.5E-06 57.7 6.9 67 422-490 21-87 (363)
341 4b3f_X DNA-binding protein smu 92.4 0.52 1.8E-05 58.0 11.9 48 914-977 191-241 (646)
342 1w4r_A Thymidine kinase; type 92.3 0.2 7E-06 53.0 6.9 68 945-1015 21-103 (195)
343 2j41_A Guanylate kinase; GMP, 92.2 0.085 2.9E-06 54.3 3.9 25 944-968 6-30 (207)
344 1rz3_A Hypothetical protein rb 92.1 0.3 1E-05 50.8 8.0 35 944-978 22-59 (201)
345 2yhs_A FTSY, cell division pro 92.1 0.95 3.3E-05 54.3 13.2 26 943-968 292-317 (503)
346 1kgd_A CASK, peripheral plasma 92.1 0.09 3.1E-06 53.8 3.9 25 945-969 6-30 (180)
347 3asz_A Uridine kinase; cytidin 92.1 0.089 3E-06 54.7 3.9 26 944-969 6-31 (211)
348 3tau_A Guanylate kinase, GMP k 91.9 0.079 2.7E-06 55.6 3.4 27 943-969 7-33 (208)
349 2j9r_A Thymidine kinase; TK1, 91.9 0.4 1.4E-05 51.4 8.7 30 947-976 31-63 (214)
350 2axn_A 6-phosphofructo-2-kinas 91.8 0.23 7.9E-06 59.9 7.6 35 945-979 36-73 (520)
351 3tr0_A Guanylate kinase, GMP k 91.7 0.11 3.7E-06 53.5 4.0 25 945-969 8-32 (205)
352 2qmh_A HPR kinase/phosphorylas 91.7 0.061 2.1E-06 57.3 2.1 33 944-977 34-66 (205)
353 3iuy_A Probable ATP-dependent 91.6 0.46 1.6E-05 49.8 8.8 18 945-962 58-75 (228)
354 3pvs_A Replication-associated 91.6 0.67 2.3E-05 54.7 11.1 32 453-486 51-82 (447)
355 1ls1_A Signal recognition part 91.4 0.94 3.2E-05 50.5 11.5 73 943-1015 97-192 (295)
356 1q0u_A Bstdead; DEAD protein, 91.4 0.68 2.3E-05 48.3 9.8 18 945-962 42-59 (219)
357 1tf7_A KAIC; homohexamer, hexa 91.4 0.82 2.8E-05 54.9 11.7 74 943-1016 280-384 (525)
358 2j37_W Signal recognition part 91.3 0.4 1.4E-05 57.7 8.9 35 943-977 100-137 (504)
359 1ex7_A Guanylate kinase; subst 91.3 0.12 4.2E-06 54.1 4.0 25 946-970 3-27 (186)
360 1j8m_F SRP54, signal recogniti 91.2 0.69 2.4E-05 51.7 10.2 72 944-1015 98-192 (297)
361 3e70_C DPA, signal recognition 91.2 0.47 1.6E-05 53.9 8.9 26 943-968 128-153 (328)
362 2xxa_A Signal recognition part 91.1 0.47 1.6E-05 55.9 9.1 72 943-1014 99-194 (433)
363 3c8u_A Fructokinase; YP_612366 91.0 0.12 4E-06 54.1 3.4 27 943-969 21-47 (208)
364 3fe2_A Probable ATP-dependent 90.9 0.46 1.6E-05 50.6 8.1 55 905-962 28-84 (242)
365 1lvg_A Guanylate kinase, GMP k 90.9 0.12 4.2E-06 53.8 3.5 26 944-969 4-29 (198)
366 3bor_A Human initiation factor 90.9 0.44 1.5E-05 50.6 7.8 55 905-962 29-85 (237)
367 3thx_B DNA mismatch repair pro 90.9 0.48 1.6E-05 60.8 9.5 22 945-966 674-695 (918)
368 3pey_A ATP-dependent RNA helic 90.9 0.46 1.6E-05 53.2 8.4 20 945-964 45-64 (395)
369 3ber_A Probable ATP-dependent 90.7 0.62 2.1E-05 50.1 8.9 18 945-962 81-98 (249)
370 3a00_A Guanylate kinase, GMP k 90.6 0.14 4.8E-06 52.5 3.6 24 946-969 3-26 (186)
371 1gtv_A TMK, thymidylate kinase 90.6 0.074 2.5E-06 55.1 1.4 24 946-969 2-25 (214)
372 1x6v_B Bifunctional 3'-phospho 90.5 0.18 6E-06 62.2 4.9 34 945-978 53-89 (630)
373 2ffh_A Protein (FFH); SRP54, s 90.5 1.1 3.9E-05 52.6 11.5 35 943-977 97-134 (425)
374 1tf7_A KAIC; homohexamer, hexa 90.4 1 3.4E-05 54.1 11.2 35 943-977 38-76 (525)
375 3hdt_A Putative kinase; struct 90.3 0.17 5.8E-06 54.4 4.0 30 945-974 15-44 (223)
376 3gmt_A Adenylate kinase; ssgci 90.2 0.2 6.8E-06 54.3 4.4 31 945-975 9-39 (230)
377 2v1u_A Cell division control p 90.1 1.3 4.4E-05 49.5 11.2 57 649-707 117-177 (387)
378 1zu4_A FTSY; GTPase, signal re 90.0 2.4 8.1E-05 47.9 13.3 35 943-977 104-141 (320)
379 1njg_A DNA polymerase III subu 90.0 0.32 1.1E-05 50.0 5.6 54 650-706 111-165 (250)
380 1sky_E F1-ATPase, F1-ATP synth 89.9 0.25 8.6E-06 58.8 5.3 24 945-968 152-175 (473)
381 2oxc_A Probable ATP-dependent 89.8 1 3.5E-05 47.4 9.5 54 905-961 23-78 (230)
382 3tbk_A RIG-I helicase domain; 89.5 1.1 3.8E-05 52.6 10.5 24 945-968 20-43 (555)
383 1c9k_A COBU, adenosylcobinamid 89.4 0.2 6.9E-06 52.3 3.5 32 947-979 2-33 (180)
384 3ney_A 55 kDa erythrocyte memb 89.3 0.22 7.5E-06 52.7 3.8 25 945-969 20-44 (197)
385 1s2m_A Putative ATP-dependent 89.3 1.5 5.1E-05 49.6 10.9 58 905-965 20-79 (400)
386 3ice_A Transcription terminati 89.2 0.76 2.6E-05 53.6 8.5 25 944-968 174-198 (422)
387 1um8_A ATP-dependent CLP prote 89.2 0.29 9.8E-06 55.8 5.0 68 422-491 27-109 (376)
388 2v3c_C SRP54, signal recogniti 89.1 0.38 1.3E-05 56.7 6.1 36 943-978 98-136 (432)
389 2zj8_A DNA helicase, putative 89.1 1.4 4.6E-05 54.8 11.4 33 944-976 39-75 (720)
390 2gza_A Type IV secretion syste 89.1 0.37 1.3E-05 55.2 5.8 69 945-1013 176-262 (361)
391 4eaq_A DTMP kinase, thymidylat 89.1 0.26 8.8E-06 52.8 4.2 31 945-975 27-59 (229)
392 1xti_A Probable ATP-dependent 88.9 2.8 9.7E-05 46.9 12.9 22 945-966 46-67 (391)
393 3b9q_A Chloroplast SRP recepto 88.8 0.44 1.5E-05 53.4 6.0 26 943-968 99-124 (302)
394 1htw_A HI0065; nucleotide-bind 88.7 0.28 9.7E-06 49.8 4.0 26 943-968 32-57 (158)
395 3lxx_A GTPase IMAP family memb 88.7 1.3 4.4E-05 46.9 9.4 23 945-967 30-52 (239)
396 1a7j_A Phosphoribulokinase; tr 88.7 0.16 5.5E-06 56.5 2.4 36 945-980 6-44 (290)
397 1znw_A Guanylate kinase, GMP k 88.6 0.27 9.2E-06 51.3 3.9 25 945-969 21-45 (207)
398 1z6g_A Guanylate kinase; struc 88.5 0.26 8.8E-06 52.2 3.7 24 945-968 24-47 (218)
399 3bos_A Putative DNA replicatio 88.5 0.79 2.7E-05 47.6 7.4 26 452-479 52-77 (242)
400 2r44_A Uncharacterized protein 88.4 2.1 7.3E-05 47.5 11.4 33 453-487 47-79 (331)
401 2jeo_A Uridine-cytidine kinase 88.3 0.3 1E-05 52.4 4.1 27 945-971 26-52 (245)
402 1l8q_A Chromosomal replication 88.3 0.58 2E-05 52.0 6.6 34 451-486 36-72 (324)
403 1wp9_A ATP-dependent RNA helic 88.3 1.2 4E-05 50.8 9.3 32 946-977 25-60 (494)
404 3thx_A DNA mismatch repair pro 88.2 0.9 3.1E-05 58.5 9.0 21 945-965 663-683 (934)
405 3p32_A Probable GTPase RV1496/ 88.1 1 3.4E-05 51.3 8.5 32 945-976 80-114 (355)
406 1odf_A YGR205W, hypothetical 3 88.0 0.22 7.5E-06 55.6 2.8 27 943-969 30-56 (290)
407 1s96_A Guanylate kinase, GMP k 87.9 0.31 1.1E-05 52.1 3.9 25 945-969 17-41 (219)
408 2va8_A SSO2462, SKI2-type heli 87.9 1.8 6.3E-05 53.5 11.4 21 944-964 46-66 (715)
409 1bif_A 6-phosphofructo-2-kinas 87.9 0.75 2.6E-05 54.4 7.5 32 945-976 40-74 (469)
410 2fwr_A DNA repair protein RAD2 87.7 0.4 1.4E-05 56.1 5.0 33 946-978 110-142 (472)
411 2ged_A SR-beta, signal recogni 87.7 0.53 1.8E-05 47.5 5.3 26 943-968 47-72 (193)
412 1wb9_A DNA mismatch repair pro 87.7 2 6.7E-05 54.5 11.5 24 944-967 607-630 (800)
413 2ocp_A DGK, deoxyguanosine kin 87.7 0.37 1.3E-05 51.4 4.3 26 945-970 3-29 (241)
414 3fht_A ATP-dependent RNA helic 87.7 1.6 5.3E-05 49.3 9.8 54 905-961 24-81 (412)
415 1xjc_A MOBB protein homolog; s 87.6 0.57 2E-05 48.3 5.5 32 945-976 5-39 (169)
416 3tqf_A HPR(Ser) kinase; transf 87.5 0.42 1.4E-05 49.9 4.4 28 944-972 16-43 (181)
417 3lxw_A GTPase IMAP family memb 87.4 1.8 6.1E-05 46.6 9.6 23 944-966 21-43 (247)
418 1m8p_A Sulfate adenylyltransfe 87.4 0.39 1.3E-05 58.6 4.8 35 945-979 397-435 (573)
419 1p5z_B DCK, deoxycytidine kina 87.4 0.16 5.4E-06 55.1 1.2 30 943-972 23-53 (263)
420 3eiq_A Eukaryotic initiation f 87.4 1 3.6E-05 50.9 8.1 56 905-963 39-96 (414)
421 3oiy_A Reverse gyrase helicase 87.3 0.74 2.5E-05 52.7 6.9 20 945-964 37-56 (414)
422 3h1t_A Type I site-specific re 87.3 1.3 4.5E-05 53.4 9.4 24 945-968 199-222 (590)
423 2v9p_A Replication protein E1; 86.9 0.38 1.3E-05 54.2 4.0 28 943-970 125-152 (305)
424 3lnc_A Guanylate kinase, GMP k 86.7 0.24 8.3E-06 52.4 2.2 24 945-968 28-52 (231)
425 2og2_A Putative signal recogni 86.7 0.72 2.5E-05 53.1 6.2 26 943-968 156-181 (359)
426 2j0s_A ATP-dependent RNA helic 86.7 1.7 5.8E-05 49.3 9.3 57 905-964 36-94 (410)
427 4edh_A DTMP kinase, thymidylat 86.4 0.63 2.1E-05 49.5 5.2 32 945-976 7-41 (213)
428 2gj8_A MNME, tRNA modification 86.4 0.9 3.1E-05 45.5 6.1 24 944-967 4-27 (172)
429 3k53_A Ferrous iron transport 86.3 0.8 2.7E-05 49.8 6.1 23 945-967 4-26 (271)
430 3kta_A Chromosome segregation 86.2 0.4 1.4E-05 48.5 3.4 24 946-969 28-51 (182)
431 1sq5_A Pantothenate kinase; P- 85.6 0.4 1.4E-05 53.5 3.4 25 945-969 81-105 (308)
432 1rj9_A FTSY, signal recognitio 85.6 0.49 1.7E-05 53.1 4.0 25 944-968 102-126 (304)
433 1zd9_A ADP-ribosylation factor 85.5 2.6 9E-05 42.4 9.1 23 945-967 23-45 (188)
434 3aez_A Pantothenate kinase; tr 85.4 0.5 1.7E-05 53.2 4.0 26 943-968 89-114 (312)
435 3ly5_A ATP-dependent RNA helic 84.8 1.6 5.4E-05 47.3 7.5 18 945-962 92-109 (262)
436 2orv_A Thymidine kinase; TP4A 84.8 2.3 7.8E-05 46.2 8.6 31 946-976 21-54 (234)
437 1np6_A Molybdopterin-guanine d 84.6 0.52 1.8E-05 48.6 3.4 24 945-968 7-30 (174)
438 2dyk_A GTP-binding protein; GT 84.5 0.55 1.9E-05 45.5 3.4 23 945-967 2-24 (161)
439 2qby_A CDC6 homolog 1, cell di 84.4 4.5 0.00015 45.0 11.2 56 649-706 115-172 (386)
440 3fmp_B ATP-dependent RNA helic 84.3 1.2 4.3E-05 52.0 6.9 53 906-961 92-148 (479)
441 4i1u_A Dephospho-COA kinase; s 84.3 0.49 1.7E-05 50.6 3.1 30 946-976 11-40 (210)
442 1upt_A ARL1, ADP-ribosylation 84.2 0.71 2.4E-05 45.2 4.0 25 943-967 6-30 (171)
443 3tif_A Uncharacterized ABC tra 84.2 0.5 1.7E-05 50.9 3.1 26 943-968 30-55 (235)
444 2qm8_A GTPase/ATPase; G protei 84.2 1.9 6.4E-05 48.9 8.0 24 945-968 56-79 (337)
445 1nrj_B SR-beta, signal recogni 84.1 0.65 2.2E-05 48.0 3.9 25 944-968 12-36 (218)
446 2chg_A Replication factor C sm 84.0 0.91 3.1E-05 46.1 4.9 42 662-706 100-141 (226)
447 2cbz_A Multidrug resistance-as 84.0 0.51 1.7E-05 50.9 3.1 26 943-968 30-55 (237)
448 3tqc_A Pantothenate kinase; bi 84.0 0.79 2.7E-05 52.0 4.8 26 944-969 92-117 (321)
449 1g8p_A Magnesium-chelatase 38 83.8 3.3 0.00011 45.9 9.7 52 410-480 20-71 (350)
450 2gk6_A Regulator of nonsense t 83.7 0.52 1.8E-05 57.9 3.4 23 946-968 197-219 (624)
451 2hf9_A Probable hydrogenase ni 83.6 1.1 3.7E-05 46.6 5.4 24 945-968 39-62 (226)
452 2wsm_A Hydrogenase expression/ 83.6 0.71 2.4E-05 47.9 3.9 25 945-969 31-55 (221)
453 2v6i_A RNA helicase; membrane, 83.5 0.82 2.8E-05 53.4 4.8 32 945-976 3-38 (431)
454 2pcj_A ABC transporter, lipopr 83.4 0.48 1.6E-05 50.6 2.5 24 945-968 31-54 (224)
455 2db3_A ATP-dependent RNA helic 83.2 6.3 0.00022 45.7 12.2 53 905-960 55-109 (434)
456 4a2p_A RIG-I, retinoic acid in 83.2 2.7 9.3E-05 49.5 9.2 24 945-968 23-46 (556)
457 3v9p_A DTMP kinase, thymidylat 83.2 0.96 3.3E-05 48.7 4.9 32 945-976 26-64 (227)
458 3l9o_A ATP-dependent RNA helic 83.2 2 6.8E-05 56.4 8.7 32 945-976 200-234 (1108)
459 1z2a_A RAS-related protein RAB 83.1 0.69 2.4E-05 45.0 3.4 23 945-967 6-28 (168)
460 2f9l_A RAB11B, member RAS onco 83.0 0.63 2.2E-05 47.6 3.2 23 945-967 6-28 (199)
461 3tmk_A Thymidylate kinase; pho 83.0 1.2 4E-05 47.7 5.4 32 945-976 6-37 (216)
462 2onk_A Molybdate/tungstate ABC 83.0 0.66 2.2E-05 50.2 3.5 25 945-969 25-49 (240)
463 1mv5_A LMRA, multidrug resista 82.8 0.59 2E-05 50.5 3.1 26 943-968 27-52 (243)
464 3iby_A Ferrous iron transport 82.8 1.4 4.7E-05 48.0 6.0 22 946-967 3-24 (256)
465 1ko7_A HPR kinase/phosphatase; 82.7 0.67 2.3E-05 52.5 3.5 30 943-973 143-172 (314)
466 1g8f_A Sulfate adenylyltransfe 82.7 0.61 2.1E-05 56.1 3.4 26 945-970 396-421 (511)
467 1oix_A RAS-related protein RAB 82.7 0.63 2.1E-05 47.5 3.0 23 946-968 31-53 (191)
468 1u8z_A RAS-related protein RAL 82.6 0.69 2.4E-05 44.8 3.2 23 945-967 5-27 (168)
469 4ag6_A VIRB4 ATPase, type IV s 82.6 1.1 3.7E-05 51.4 5.3 34 944-977 35-71 (392)
470 1lw7_A Transcriptional regulat 82.6 0.71 2.4E-05 52.6 3.7 27 945-971 171-197 (365)
471 2ce2_X GTPase HRAS; signaling 82.5 0.71 2.4E-05 44.5 3.2 24 945-968 4-27 (166)
472 1b0u_A Histidine permease; ABC 82.5 0.63 2.1E-05 51.0 3.1 25 945-969 33-57 (262)
473 1kao_A RAP2A; GTP-binding prot 82.4 0.76 2.6E-05 44.5 3.4 23 945-967 4-26 (167)
474 2p67_A LAO/AO transport system 82.4 3 0.0001 47.1 8.8 25 944-968 56-80 (341)
475 2f1r_A Molybdopterin-guanine d 82.4 0.53 1.8E-05 48.4 2.3 24 945-968 3-26 (171)
476 3b85_A Phosphate starvation-in 82.3 0.48 1.6E-05 50.2 2.0 23 945-967 23-45 (208)
477 2zu0_C Probable ATP-dependent 82.2 0.75 2.6E-05 50.5 3.6 25 943-967 45-69 (267)
478 2lkc_A Translation initiation 82.2 1 3.4E-05 44.5 4.3 23 944-966 8-30 (178)
479 2ghi_A Transport protein; mult 82.1 0.67 2.3E-05 50.7 3.1 26 943-968 45-70 (260)
480 1ek0_A Protein (GTP-binding pr 82.0 0.8 2.7E-05 44.5 3.4 24 945-968 4-27 (170)
481 3cr8_A Sulfate adenylyltranfer 82.0 0.6 2.1E-05 56.7 3.0 37 944-980 369-409 (552)
482 2d2e_A SUFC protein; ABC-ATPas 82.0 0.71 2.4E-05 50.1 3.3 23 945-967 30-52 (250)
483 1ewq_A DNA mismatch repair pro 81.8 1.7 5.8E-05 54.8 7.0 23 945-967 577-599 (765)
484 1w36_D RECD, exodeoxyribonucle 81.8 0.7 2.4E-05 56.6 3.5 24 945-968 165-188 (608)
485 2pze_A Cystic fibrosis transme 81.7 0.64 2.2E-05 49.8 2.7 25 944-968 34-58 (229)
486 2ixe_A Antigen peptide transpo 81.7 0.7 2.4E-05 50.9 3.1 27 943-969 44-70 (271)
487 1g6h_A High-affinity branched- 81.6 0.64 2.2E-05 50.7 2.8 25 945-969 34-58 (257)
488 1sgw_A Putative ABC transporte 81.5 0.62 2.1E-05 49.6 2.6 24 945-968 36-59 (214)
489 2wjg_A FEOB, ferrous iron tran 81.5 0.89 3E-05 45.5 3.6 23 945-967 8-30 (188)
490 3sop_A Neuronal-specific septi 81.4 0.79 2.7E-05 50.5 3.4 23 946-968 4-26 (270)
491 1z0j_A RAB-22, RAS-related pro 81.4 0.86 2.9E-05 44.4 3.4 24 945-968 7-30 (170)
492 2ff7_A Alpha-hemolysin translo 81.4 0.66 2.3E-05 50.4 2.8 26 944-969 35-60 (247)
493 3dkp_A Probable ATP-dependent 81.4 2.2 7.7E-05 45.0 6.9 17 945-961 67-83 (245)
494 1ky3_A GTP-binding protein YPT 81.4 0.8 2.7E-05 45.2 3.2 23 945-967 9-31 (182)
495 2olj_A Amino acid ABC transpor 81.3 0.74 2.5E-05 50.6 3.1 25 945-969 51-75 (263)
496 3lv8_A DTMP kinase, thymidylat 81.3 0.78 2.7E-05 49.7 3.3 31 945-975 28-62 (236)
497 1wms_A RAB-9, RAB9, RAS-relate 81.2 0.87 3E-05 44.9 3.4 23 945-967 8-30 (177)
498 2yz2_A Putative ABC transporte 81.2 0.75 2.6E-05 50.4 3.1 26 943-968 32-57 (266)
499 1nij_A Hypothetical protein YJ 81.2 1.1 3.9E-05 50.2 4.6 24 945-968 5-28 (318)
500 3def_A T7I23.11 protein; chlor 81.1 3.6 0.00012 44.4 8.5 23 945-967 37-59 (262)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.9e-64 Score=625.09 Aligned_cols=547 Identities=27% Similarity=0.409 Sum_probs=382.6
Q ss_pred cccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 000950 409 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 488 (1211)
Q Consensus 409 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 488 (1211)
-+|+|+..--+ ++.|..|.+.....|+|+++ |.+-=-...+.|||.|||| ....+||||+|+++++.++.++..
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~--f~~~g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPAL--FKAIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGG--GTSCCCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHH--HhhcCCCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899999988 99999999999889999887 5442234568899999999 699999999999999999998864
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeeee
Q 000950 489 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 568 (1211)
Q Consensus 489 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 568 (1211)
.+.+.+..
T Consensus 273 ~l~sk~~g------------------------------------------------------------------------ 280 (806)
T 3cf2_A 273 EIMSKLAG------------------------------------------------------------------------ 280 (806)
T ss_dssp HHHSSCTT------------------------------------------------------------------------
T ss_pred Hhhcccch------------------------------------------------------------------------
Confidence 43332211
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHHH
Q 000950 569 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 648 (1211)
Q Consensus 569 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k~ 648 (1211)
+...
T Consensus 281 ----------------------------------------------------------------------------ese~ 284 (806)
T 3cf2_A 281 ----------------------------------------------------------------------------ESES 284 (806)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1123
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Ch----hhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG----NN----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 718 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~----~~----~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~~~ 718 (1211)
.+..+|+.+.. .+|.||||||+|.++.. +. ++.+.|...++.+ .++|+|||+||+++.
T Consensus 285 ~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~--------- 352 (806)
T 3cf2_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (806)
T ss_dssp HHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT---------
T ss_pred HHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh---------
Confidence 56677777765 89999999999996542 22 3344444555555 358999999996555
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchh
Q 000950 719 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 719 ~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~I 796 (1211)
+|+ ||+| ||++++++++||..+|.+|
T Consensus 353 ---------------------LD~-------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 353 ---------------------IDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp ---------------------SCT-------------------------------TTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred ---------------------cCH-------------------------------HHhCCcccceEEecCCCCHHHHHHH
Confidence 343 8888 9999999999999999999
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcc-ccccCchhhhHHHHHhhhhhh
Q 000950 797 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSES 874 (1211)
Q Consensus 797 l~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~-~~kl-~id~~sI~~~~~df~~a~~ei 874 (1211)
+++|+.... --.++++..||..|.||+|+||+.||+.|+..|+.|..+.+.. .... .-..+++.+...||+.++.++
T Consensus 381 L~~~l~~~~-~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 381 LQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHTCSSSE-ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred HHHHhcCCC-CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 999975221 1267899999999999999999999999999999987654322 1111 111234556667787776665
Q ss_pred hhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCC
Q 000950 875 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 954 (1211)
Q Consensus 875 k~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpG 954 (1211)
++... ... ....+.++|++|+|++++++.|++.+.+|+.+++.|.+.+ ..|++|+|||||||
T Consensus 460 ~ps~~----------------r~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPG 521 (806)
T 3cf2_A 460 NPSAL----------------RET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPG 521 (806)
T ss_dssp SCCCC----------------CCC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTT
T ss_pred CCccc----------------ccc-cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCC
Confidence 54321 001 1122368999999999999999999999999999999887 45679999999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHH
Q 000950 955 TGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMK 1032 (1211)
Q Consensus 955 TGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il 1032 (1211)
||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|++.+||||||||||.|++.|... ......++++
T Consensus 522 tGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~ 601 (806)
T 3cf2_A 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp SSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHH
T ss_pred CCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887542 3345677899
Q ss_pred HhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHc
Q 000950 1033 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA 1110 (1211)
Q Consensus 1033 ~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T 1110 (1211)
++|+.+|+++... .+|+||+|||+|+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|++.||+.|
T Consensus 602 ~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t 679 (806)
T 3cf2_A 602 NQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679 (806)
T ss_dssp HHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------
T ss_pred HHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhC
Confidence 9999999998654 679999999999999999999 999999999999999999999999998888899999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhh
Q 000950 1111 DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELL 1190 (1211)
Q Consensus 1111 ~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v 1190 (1211)
+||||+||.++|++|++.|+|+.++............ ............++|+++||++|+++++||++.+ .+..+.
T Consensus 680 ~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y~ 756 (806)
T 3cf2_A 680 NGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYE 756 (806)
T ss_dssp ------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-ccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHHHH
Confidence 9999999999999999999999876543211100000 0000111223456899999999999999999876 445667
Q ss_pred HHHHHhc
Q 000950 1191 QWNELYG 1197 (1211)
Q Consensus 1191 ~WnDigG 1197 (1211)
+|...++
T Consensus 757 ~~~~~f~ 763 (806)
T 3cf2_A 757 MFAQTLQ 763 (806)
T ss_dssp CCC----
T ss_pred HHHHHHh
Confidence 7766554
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=394.60 Aligned_cols=247 Identities=34% Similarity=0.591 Sum_probs=227.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .||+|+|||||||||||+||+|+|++++++|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999999999999884 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
|+|++++.++.+|..|+..+||||||||||.++++|... +......+++++|+..|+++... .+|+||+|||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 999999999999999999999999999999999877543 23445677889999999998644 68999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
||++++| ||++.|+|++|+.++|.+||+.++++..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------- 372 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------- 372 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-------
Confidence 9999999 9999999999999999999999999999889999999999999999999999999999998875
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASV 1179 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~ 1179 (1211)
....|+++||+.|++++.+..
T Consensus 373 -------------------~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 373 -------------------RRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp -------------------TCSBCCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCcCHHHHHHHHHHHhCcc
Confidence 124699999999999987654
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.3e-43 Score=444.01 Aligned_cols=543 Identities=28% Similarity=0.435 Sum_probs=373.4
Q ss_pred ccccccccccchhhHHHHHHhhhhhcccccccccccCCC-CCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 000950 410 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 488 (1211)
Q Consensus 410 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l-~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 488 (1211)
.|+|+..--+ +..+..|.+.....|+|+++ |. +| -.....|||.||+| ....+||||||+..+..++.++..
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~--~~-~l~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPAL--FK-AIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGG--GT-SSCCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHH--HH-hcCCCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEch
Confidence 5889998877 88888888888888898876 32 23 34567899999999 689999999999999888777643
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeeee
Q 000950 489 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 568 (1211)
Q Consensus 489 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 568 (1211)
.+.+.+..+
T Consensus 273 ~l~~~~~g~----------------------------------------------------------------------- 281 (806)
T 1ypw_A 273 EIMSKLAGE----------------------------------------------------------------------- 281 (806)
T ss_dssp HHSSSSTTH-----------------------------------------------------------------------
T ss_pred Hhhhhhhhh-----------------------------------------------------------------------
Confidence 322211000
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHHH
Q 000950 569 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 648 (1211)
Q Consensus 569 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k~ 648 (1211)
-..
T Consensus 282 -----------------------------------------------------------------------------~~~ 284 (806)
T 1ypw_A 282 -----------------------------------------------------------------------------SES 284 (806)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Ch----hhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG----NN----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 718 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~----~~----~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~~~ 718 (1211)
.+..+|+-... ..|.||||||++.++.. .. ++.+.+...++.+ ...|+||+++|+++.
T Consensus 285 ~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~--------- 352 (806)
T 1ypw_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (806)
T ss_dssp HHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT---------
T ss_pred HHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh---------
Confidence 33444554444 57899999999986542 12 2334444445544 358999999995443
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchh
Q 000950 719 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 719 ~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~I 796 (1211)
+++ +++| ||++++++.+|+...|.+|
T Consensus 353 ---------------------ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 353 ---------------------IDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp ---------------------SCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred ---------------------cCH-------------------------------HHhcccccccccccCCCCHHHHHHH
Confidence 332 4444 7777788888888888888
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccc---cCchhhhHHHHHhhhh
Q 000950 797 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIS---TESIMYGLNILQGIQS 872 (1211)
Q Consensus 797 l~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id---~~sI~~~~~df~~a~~ 872 (1211)
+++|.. ...+ .+.++..++..+.+|+++++..+|..|+..++.+....+.... ..++ ...+.+...+|..++.
T Consensus 381 l~~~~~--~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~~~~~~~~v~~~d~~~al~ 457 (806)
T 1ypw_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp HHHTTT--TSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCHHHHTTCCCCTTHHHHHHH
T ss_pred HHHHHh--cCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-hccchhhhhhhhhhhhhhhcccc
Confidence 887743 2233 6678999999999999999999999999988876543221100 0000 0111112222222211
Q ss_pred hhhhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcC
Q 000950 873 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 952 (1211)
Q Consensus 873 eik~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GP 952 (1211)
...+.. .... ......++|++++|++++++.|.+++.+++.+++.|...++ .++.++||+||
T Consensus 458 ~~~~s~----------------~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp 519 (806)
T 1ypw_A 458 QSNPSA----------------LRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGP 519 (806)
T ss_dssp HSCCCC----------------CCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCC
T ss_pred ccCchh----------------hhhh-cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECC
Confidence 111100 0001 11223678999999999999999999999999998887764 45688999999
Q ss_pred CCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHH
Q 000950 953 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRK 1030 (1211)
Q Consensus 953 pGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~ 1030 (1211)
||||||+||++||.+++.+|+.++++++.+.|+|+.+..++.+|..|+...|+||||||||.|+..+... .......+
T Consensus 520 pGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 599 (806)
T 1ypw_A 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp TTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777543 23456788
Q ss_pred HHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHH
Q 000950 1031 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1108 (1211)
Q Consensus 1031 il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~ 1108 (1211)
++++|+..++++... .+++||+|||+++.||++++| ||+..|++++|+.++|.+||+.++++..+..++++..|+.
T Consensus 600 v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~ 677 (806)
T 1ypw_A 600 VINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp HHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCG
T ss_pred HHHHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHH
Confidence 999999999987543 679999999999999999999 9999999999999999999999998888888889999999
Q ss_pred HcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhh
Q 000950 1109 MADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNE 1188 (1211)
Q Consensus 1109 ~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~ 1188 (1211)
.+.||+++||.++|+.|+..++++.++.......... ................|+++||++|++.++|+++.+ .+..
T Consensus 678 ~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ 754 (806)
T 1ypw_A 678 MTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ-TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRK 754 (806)
T ss_dssp GGSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC--------------
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccccccccccccccCccCHHHHHHHHHhCCCCCCHH--HHHH
Confidence 9999999999999999999999986544221100000 000000001122346899999999999999998776 4567
Q ss_pred hhHHHHHhc
Q 000950 1189 LLQWNELYG 1197 (1211)
Q Consensus 1189 ~v~WnDigG 1197 (1211)
+..|...++
T Consensus 755 ye~~~~~~~ 763 (806)
T 1ypw_A 755 YEMFAQTLQ 763 (806)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 788877654
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-40 Score=389.28 Aligned_cols=261 Identities=32% Similarity=0.569 Sum_probs=228.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 34789999999999999999999999999999998884 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|+|++++.++.+|..|+..+||||||||+|.++..|... +......+++.+++..+++.... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999887543 23445667888999999987643 6899999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||+|+||+++|++|++.|+++-
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999988761
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHH
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1193 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~Wn 1193 (1211)
...++++||..|++++.++.... .....+.+||
T Consensus 435 ---------------------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------------------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ---------------------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ---------------------CCccCHHHHHHHHHHHhcCcccc-hhHHHHHhhC
Confidence 24689999999999998765432 2234567775
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-41 Score=388.77 Aligned_cols=251 Identities=35% Similarity=0.620 Sum_probs=228.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 34789999999999999999999999999999998884 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++.+|+..++++... .+++||+|||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 99999999999999999999999999999999998874422 2334567788899999987543 6799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|++.||..|+||||+||.++|++|++.|+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999988875
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
....|+++||+.|++++.++...+
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCC
T ss_pred --------------------CCCccCHHHHHHHHHHHhCCCChh
Confidence 124699999999999998876543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=388.05 Aligned_cols=250 Identities=32% Similarity=0.563 Sum_probs=229.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|+|++++++|+.++++++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999885 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++.+|+..++++... .+|+||||||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 99999999999999999999999999999999998875432 2335567888999999998654 6799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|++.|+++-
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~----- 406 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG----- 406 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999988751
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1181 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~ 1181 (1211)
...|+++||.+|+++++|+.++
T Consensus 407 ---------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 ---------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ---------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred ---------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 2469999999999999987543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-40 Score=385.81 Aligned_cols=250 Identities=37% Similarity=0.645 Sum_probs=227.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34789999999999999999999999999999999884 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
+|.|++++.++.+|..|+..+||||||||||.++++|...+ ......+++++|+..++++... .+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998875432 2345567888999999998654 6799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 6999999999999999999999999988888999999999999999999999999999988875
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1181 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~ 1181 (1211)
....|+++||..|++++.++...
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC-
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhccCc
Confidence 12469999999999999887543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=373.49 Aligned_cols=247 Identities=35% Similarity=0.562 Sum_probs=224.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|+|||||||||||+||+|+|++++++|+.++++++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 4689999999999999999999999999999999885 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
|+|+++..++.+|..|+..+||||||||+|.+++.|... .......+++.+|+..++|+... .+++||+|||+++.
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRADT 323 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSSS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChhh
Confidence 999999999999999999999999999999999887432 22335677889999999998654 67999999999999
Q ss_pred CcHHHHh--ccCcccccC-CCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~-lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
||++++| ||++.|+|+ +|+.++|..||+.++++..+..++|++.||..|+||||+||.++|++|++.|+++
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~------ 397 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK------ 397 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
Confidence 9999999 999999995 8999999999999999998889999999999999999999999999999998875
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHh-ccCc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQV-CASV 1179 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv-~pS~ 1179 (1211)
....|+++||++|+.++ +++.
T Consensus 398 --------------------~~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 398 --------------------NRYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHSCSCC
T ss_pred --------------------CCCCCCHHHHHHHHHHhhCccC
Confidence 12469999999999764 5443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4e-39 Score=401.58 Aligned_cols=287 Identities=37% Similarity=0.583 Sum_probs=254.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ .+||+|||||||||||||+||++||++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 368999999999999999999999999999999887 4577999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
|.|+.++.++.+|..|++++|+||||||||.|++++.... .+..++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998876532 334578899999999998654 6799999999999999
Q ss_pred HHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000950 1064 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1141 (1211)
Q Consensus 1064 ~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~ 1141 (1211)
++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+++||.+||++|++.++++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 99999 99999999999999999999999999888899999999999999999999999999999999986533211
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCccc
Q 000950 1142 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1142 ~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rk 1203 (1211)
..............++++||..|+++++|+...+.....|.+.|+||+|++.+|+
T Consensus 433 -------~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 433 -------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp -------TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred -------cccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHH
Confidence 0000000011235789999999999999999999888889999999999988875
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=336.62 Aligned_cols=290 Identities=37% Similarity=0.658 Sum_probs=241.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSK 983 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~seL~s~ 983 (1211)
.++|+||+|++++++.|++.+.+|+.++++|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++.+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 6799999999999999999999999999998742 5677999999999999999999999999 899999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
+.|..++.++.+|..|+..+|+||||||||.+.+.+... ......+++++|+..++++.. ...+++||+|||.++.++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLD 163 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccCC
Confidence 999999999999999999999999999999998776543 345667888999999988753 236899999999999999
Q ss_pred HHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1064 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1064 ~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++|||+..+++++|+.++|.+||+.++...... .+.++..|+..|.||+++||.+||++|++.++++.+........
T Consensus 164 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~ 243 (322)
T 1xwi_A 164 SAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKV 243 (322)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEE
T ss_pred HHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999876554 67889999999999999999999999999999986532100000
Q ss_pred HHHh--------hc---cCCC-----------CC-CCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCC
Q 000950 1143 LALA--------EN---RASP-----------PL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1199 (1211)
Q Consensus 1143 ~a~a--------e~---~~~~-----------~~-~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~ 1199 (1211)
.... .. ...+ .. ......++|+++||..|+++++||++.+ .+..+.+|+..||.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 244 RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFGQE 321 (322)
T ss_dssp EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTCSC
T ss_pred ccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHHccC
Confidence 0000 00 0000 00 0001135899999999999999999876 467899999999987
Q ss_pred C
Q 000950 1200 G 1200 (1211)
Q Consensus 1200 ~ 1200 (1211)
|
T Consensus 322 ~ 322 (322)
T 1xwi_A 322 G 322 (322)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=7e-35 Score=329.75 Aligned_cols=292 Identities=38% Similarity=0.646 Sum_probs=236.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+.++|++|+|++.+++.|++.+.+|+.+++.|... ..|++++||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 36789999999999999999999999999998764 4677899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++++..++++.. ...+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999876533 2233456777888888887643 236799999999999999
Q ss_pred HHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1064 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1064 ~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++|||+..+++++|+.++|.+||+.++...... .+.++..|+..++||+++||.++|+.|++.++++..+.......
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999886644 67889999999999999999999999999999987532110000
Q ss_pred HH-Hhhc-cCCCC---------------CCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCc
Q 000950 1143 LA-LAEN-RASPP---------------LYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1201 (1211)
Q Consensus 1143 ~a-~ae~-~~~~~---------------~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~ 1201 (1211)
.. .... ...+. .......++|+++||.+|++.++||++.+ .+..+.+|+..||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 00 0000 00000 00111236799999999999999999876 56789999999998873
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.1e-34 Score=329.56 Aligned_cols=293 Identities=37% Similarity=0.618 Sum_probs=231.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+..+|++|+|++.+++.|.+.+.+|+.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++.+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 346799999999999999999999999999999763 467789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
.+.|..+..++.+|..|+...|+||||||||.|.+.+.. .......++.++|+..++++... ..+++||+|||.++.|
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQL 200 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCcccC
Confidence 999999999999999999999999999999999876543 23445677888888888876432 3679999999999999
Q ss_pred cHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH-
Q 000950 1063 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE- 1140 (1211)
Q Consensus 1063 d~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e- 1140 (1211)
+++++|||+..+++++|+.++|.+||+.++...... .+.++..|+..++||+++||.++|++|++.++++........
T Consensus 201 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 280 (355)
T 2qp9_X 201 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280 (355)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999886543 678899999999999999999999999999999864321000
Q ss_pred ---HHHHHhhcc-------------CCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCc
Q 000950 1141 ---RALALAENR-------------ASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGS 1201 (1211)
Q Consensus 1141 ---~~~a~ae~~-------------~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~ 1201 (1211)
......... +..........++|+++||..|+++++||++.+ .+..+.+|+..||.+|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 355 (355)
T 2qp9_X 281 VSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 355 (355)
T ss_dssp CCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHH--HHHHHHHHHHHTC----
T ss_pred hccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhccCCC
Confidence 000000000 000000111236799999999999999999876 46789999999998773
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.6e-33 Score=331.00 Aligned_cols=293 Identities=37% Similarity=0.640 Sum_probs=232.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSI 980 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~seL 980 (1211)
..+.++|++|+|++.+++.|.+.+.+|+.++++|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 3446899999999999999999999999999988743 4577899999999999999999999999 899999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 981 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+.+.|..+..++.+|..++...|+||||||||.|++.+... .....++++++|+..++++.. ...+++||+|||+++
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPW 282 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCGG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCcc
Confidence 999999999999999999999999999999999998766543 334566788899999988653 236799999999999
Q ss_pred CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1061 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1061 ~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l-~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
.++++++|||+..+.+++|+.++|..||+.++..... ..+.++..|+..++||+++||.++|+.|++.++++++.....
T Consensus 283 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~ 362 (444)
T 2zan_A 283 VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999987654 367889999999999999999999999999999987532100
Q ss_pred HHHHHHh--------hccCC---C-----------CC-CCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHh
Q 000950 1140 ERALALA--------ENRAS---P-----------PL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1196 (1211)
Q Consensus 1140 e~~~a~a--------e~~~~---~-----------~~-~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDig 1196 (1211)
....... ..... + .. ......++|+++||..|+++++||++.+ .+..+.+|+..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~--~~~~~~~~~~~~ 440 (444)
T 2zan_A 363 KKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQ--DLLKLKKFTEDF 440 (444)
T ss_dssp EEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHH--HHHHHHHHTSSC
T ss_pred hhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHH
Confidence 0000000 00000 0 00 0011235899999999999999999876 467889999999
Q ss_pred cCCC
Q 000950 1197 GEGG 1200 (1211)
Q Consensus 1197 Gl~~ 1200 (1211)
|.+|
T Consensus 441 ~~~~ 444 (444)
T 2zan_A 441 GQEG 444 (444)
T ss_dssp TTTC
T ss_pred cCCC
Confidence 9875
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=316.69 Aligned_cols=286 Identities=38% Similarity=0.620 Sum_probs=232.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
.++|++|+|++.+++.|.+.+..|+.+++.|...++ .++.++||+||||||||+||+++|++++.+|+.++++++.+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 578999999999999999999999999999988764 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
+|..+..++.+|..|+...|+||||||||.|...+... .......+++++++..++++.. ..+++||+|||+++.+
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDII 167 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGGS
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCcccc
Confidence 99999999999999999999999999999997654321 0011223456677777777643 3679999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
+++++| ||+..+++++|+.++|.+|++.++.+..+..++++..++..+.||+|+||+++|++|+..++++.+......
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999 999999999999999999999999988877889999999999999999999999999999999876443211
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHh
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELY 1196 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDig 1196 (1211)
.......... ...........|+++||..|+++++|+++.+ .+..+..|+..+
T Consensus 248 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~--~~~~~~~~~~~~ 300 (301)
T 3cf0_A 248 ERERQTNPSA-MEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTL 300 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCCCSSCHH--HHHHHHHHHHHH
T ss_pred hhhccccccc-ccccccccCCccCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHh
Confidence 0000000000 0000112346899999999999999999865 456788998765
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.4e-33 Score=333.75 Aligned_cols=282 Identities=38% Similarity=0.610 Sum_probs=229.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++|+|++.+++.|.+.+..++.+++.|...+. .++.++||+||||||||++|++|+++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357999999999999999999999999999988764 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
+|+.+..++.+|..|....|+||||||||.|.+.+... ..+...+++..|+..+++... ..+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776532 234556778888888876643 367999999999999999
Q ss_pred HHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1065 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1065 aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++++ ||+..+.+++|+.++|.+||+.++....+..+.++..++..+.||+++||.+||+.|+..++++..+....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~--- 432 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL--- 432 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT---
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc---
Confidence 9999 99999999999999999999999998888888899999999999999999999999999998874321100
Q ss_pred HHHhhccCCCCC-CCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCC
Q 000950 1143 LALAENRASPPL-YSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1200 (1211)
Q Consensus 1143 ~a~ae~~~~~~~-~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~ 1200 (1211)
..... ........++++||..|+++++|+..++.....|.+.|+||||...
T Consensus 433 -------~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 433 -------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp -------TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred -------cccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 00000 0001234799999999999999999999988899999999999753
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=311.65 Aligned_cols=276 Identities=44% Similarity=0.783 Sum_probs=231.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++|+|++.+++.|.+.+..|+.+++.|... ..+++++||+||||||||+||+++|++++.+|+.++++++.+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 5789999999999999999999999998888654 35678999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
.|..+..++.+|..+....|+||||||||.|.+.+.. ..+....+++++++..+++.......+++||+|||.++.+++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 9999999999999999999999999999999876543 234456678888888888876555578999999999999999
Q ss_pred HHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000950 1065 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL 1143 (1211)
Q Consensus 1065 aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~ 1143 (1211)
++++||...+.+++|+.++|.+|++.++...... .+.++..|+..+.||+++||..||+.|+..+++++.......
T Consensus 237 ~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~--- 313 (357)
T 3d8b_A 237 AARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT--- 313 (357)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--------
T ss_pred HHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcc---
Confidence 9999999999999999999999999999875543 567899999999999999999999999999988753221100
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCC
Q 000950 1144 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1199 (1211)
Q Consensus 1144 a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~ 1199 (1211)
....+.++|+++||..|+.+++|+.+.+ .+..+..|++.||.+
T Consensus 314 -----------~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 314 -----------ITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp ----------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred -----------ccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 1112346899999999999999998776 567789999999975
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=3.2e-32 Score=302.55 Aligned_cols=259 Identities=38% Similarity=0.634 Sum_probs=208.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
.++|+||+|++++++.|++.+.+|+.+++.|...++. +++|++|+||||||||+|+++||.+++.+++.+++.++.+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5789999999999999999999999999999887754 557899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
.+..++.++.+|..++...|+|+|+||+|.++..+... ......+++++++..+++... +..++++++||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 88889999999999998999999999999987654321 122334667888888888743 367899999999999999
Q ss_pred HHHh--ccCcccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000950 1065 AVVR--RLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILEKE 1137 (1211)
Q Consensus 1065 aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k---~~l~~dvdL~~LA~~T--~GySgaDL~~L~~~Aa~~Airrlle~~ 1137 (1211)
+++| ||++.|++++|+.++|.+||+.+++. ..+..++++..||..+ +||+|+||.++|++|++.++++.+...
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 99999999999999999999999864 3455788999999875 599999999999999999998865332
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1138 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1138 ~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
... .......|+++||++|+++++||++.+
T Consensus 242 ~~~---------------~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 242 KSG---------------NEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred ccc---------------ccccCCeecHHHHHHHHHHhcCCCChh
Confidence 110 011224799999999999999998765
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=3.4e-31 Score=294.08 Aligned_cols=277 Identities=45% Similarity=0.764 Sum_probs=221.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|++|+|++.+++.|.+.+..++.+++.|... ..++.++||+||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 46799999999999999999999999888888643 3567899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-CCccEEEEEecCCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-~~~~VlVIaTTN~p~~L 1062 (1211)
+.|..+..++.+|..+....|+||||||+|.+...+... ..+....+.+.++..+++.... ...+++||++||.++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 999999999999999999999999999999998765431 1222345566677777665432 12579999999999999
Q ss_pred cHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000950 1063 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKER 1141 (1211)
Q Consensus 1063 d~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l-~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~ 1141 (1211)
++++++||+..+.+++|+.++|..|++.++..... .++.++..|+..+.||+++||.++|+.|+..+++++......
T Consensus 173 ~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~-- 250 (297)
T 3b9p_A 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK-- 250 (297)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-------
T ss_pred CHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc--
Confidence 99999999999999999999999999999987654 356678999999999999999999999999998875322110
Q ss_pred HHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCC
Q 000950 1142 ALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1199 (1211)
Q Consensus 1142 ~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~ 1199 (1211)
. ....+...|+++||..|+.+++|+...+ .+..+.+|++.||.-
T Consensus 251 ~------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 251 C------------LDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDI 294 (297)
T ss_dssp ---------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC------
T ss_pred c------------ccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCe
Confidence 0 0112346799999999999999998765 456789999999964
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=302.92 Aligned_cols=277 Identities=45% Similarity=0.794 Sum_probs=221.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
...+|++|+|++.+++.|.+++..++.+++.|...+ .++++|||+||||||||+||++||++++.+|+.++|.++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 357899999999999999999999988888887543 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1063 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld 1063 (1211)
+.|..+..++.+|..++...|+||||||||.|+..+.. .......++++.|+..+++.......+++||+|||.++.++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999766532 23334567778888888876654457899999999999999
Q ss_pred HHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1064 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1064 ~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
+++++||...+.++.|+.++|.+||+.++...... .+.++..|+..+.||++++|..||+.|+..+++++.....
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~---- 342 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV---- 342 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 99999999899999999999999999999875443 5667899999999999999999999999999887532111
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCC
Q 000950 1143 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 1199 (1211)
Q Consensus 1143 ~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~ 1199 (1211)
......+.+.|+++||..++++++++...+ .+..+.+|+..||..
T Consensus 343 ----------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 343 ----------KNMSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp -----------CCSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred ----------hccchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 001122446899999999999999998754 566889999999975
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.5e-30 Score=281.82 Aligned_cols=267 Identities=40% Similarity=0.653 Sum_probs=217.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
..+|++|+|++++++.|.+.+..++..++.|...++ .++.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 578999999999999999999999999999988774 4558999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
.|..+..+..+|..++...|+||||||+|.+.+++... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998766432 1222334455566666665543 3579999999999999
Q ss_pred cHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000950 1063 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKE 1140 (1211)
Q Consensus 1063 d~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e 1140 (1211)
++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||++++|..+|+.|...++++.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------- 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------- 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 999999 99999999999999999999999988887788899999999999999999999999998876641
Q ss_pred HHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCC
Q 000950 1141 RALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGG 1200 (1211)
Q Consensus 1141 ~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~ 1200 (1211)
...|+++||.+|++++.+...........+-.|...+|.-+
T Consensus 243 -------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 24699999999999998776666667778889988887654
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.3e-29 Score=299.37 Aligned_cols=265 Identities=38% Similarity=0.589 Sum_probs=218.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
....+|+||+|++++++++++.+.. +..+..|...+. ++++++||+||||||||+||++||.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 4578999999999999999998875 667788877664 45689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+.|.....++.+|..|+...|+||||||||.+...+... +......+++++++..++++.. ..+++||++||+++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999997665421 2222345677888888887643 36799999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.++++++| ||++.+.+++|+.++|.+|++.++++..+..++++..++..+.||+++||.++|++|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888888889999999999999999999999999876543
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccccc----chhhhhHHHHHhc
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSEST----NMNELLQWNELYG 1197 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~----~~~~~v~WnDigG 1197 (1211)
....|+++||..|+.++.+....... .....+.|.++|+
T Consensus 240 --------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 --------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 12469999999999998765433221 2335678888774
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=1.3e-28 Score=268.54 Aligned_cols=244 Identities=39% Similarity=0.614 Sum_probs=205.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||++|+++|++++.+++.+++.++...
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 467899999999999999998765 666777766553 455789999999999999999999999999999999999988
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
+.|..+..++.+|..|....|++|||||||.+...+... ........+++.++..++++.. ..+++||+|||.++.
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDV 162 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCchh
Confidence 899999999999999999899999999999997655421 1222334566777777777643 367999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
++++++| ||++.+.+++|+.++|.+|++.++....+..+.++..++..+.||+++||.++|+.|+..+.++
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 235 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------- 235 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 9999999999999999999999998888888888999999999999999999999999876653
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhcc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCA 1177 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~p 1177 (1211)
....|+++||..|++++..
T Consensus 236 -------------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 -------------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------------TCSSBCHHHHHHHHHHHTT
T ss_pred -------------------CCCcccHHHHHHHHHHHhc
Confidence 1246999999999998764
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=267.15 Aligned_cols=247 Identities=35% Similarity=0.547 Sum_probs=189.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
.++|++|+|++.+++.|++.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 46899999999999999998875 666777766664 4558899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc---hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~---~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
.+..+..++.+|..+....|+||||||+|.+...+.... ........+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976553211 011223445566666665532 357999999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcc--cHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV--DLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1137 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dv--dL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~ 1137 (1211)
+++++++ ||+..+++++|+.++|.+|++.++....+..+. .+..++..+.||++++|.++|+.|+..+.++-
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 999999999999999999999999887655433 35789999999999999999999998876641
Q ss_pred HHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccc
Q 000950 1138 KKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSS 1181 (1211)
Q Consensus 1138 ~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~ 1181 (1211)
...|+++||..|++++.++...
T Consensus 234 ----------------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 ----------------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp -------------------------CCBCCHHHHHHHHHHHHHC
T ss_pred ----------------------CCCCCHHHHHHHHHHhccChhh
Confidence 1358999999999998776543
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-27 Score=285.76 Aligned_cols=264 Identities=36% Similarity=0.554 Sum_probs=221.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
...+|++|+|+++++..+++.+.. +..+..|...++ ..++|+||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 468999999999999999998765 566777776664 455789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
+.|.....++.+|+.++...|+||||||||.+...+... ..+......+++++..+++... +..+++|++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999999988889999999999997655421 1233445677888888887653 367899999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
||++++| ||++.+.|++|+.++|.+||+.+++...+..++++..+|..+.||+++||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777778889999999999999999999999998766543
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccc----hhhhhHHHHHhc
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTN----MNELLQWNELYG 1197 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~----~~~~v~WnDigG 1197 (1211)
....|+++||..|++++.+........ ....+.|.++|+
T Consensus 255 -------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 -------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp -------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred -------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 124699999999999998775433222 235678988875
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1e-28 Score=270.15 Aligned_cols=252 Identities=36% Similarity=0.560 Sum_probs=205.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000950 902 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 981 (1211)
Q Consensus 902 ~e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~ 981 (1211)
..+..+|++|+|++.+++.|.+.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+|+.+++..+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34467899999999999999998774 777888876653 4557899999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch---HHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~---~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
..+.|..+..++.+|..+....|+||||||+|.|...+...+. ......+++.++..+++... ...+++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 8888877777888999999999999999999999765421110 00112355667777776543 2356999999999
Q ss_pred CCCCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHH
Q 000950 1059 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1136 (1211)
Q Consensus 1059 p~~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~ 1136 (1211)
++.+++++++ ||+..+.++.|+.++|.++|+.++....+..+.++..|+..+.||+++||.++|+.|+..+.++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN---- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS----
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999999 9999999999999999999999998877777888999999999999999999999998766432
Q ss_pred HHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhccCcccc
Q 000950 1137 EKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSE 1182 (1211)
Q Consensus 1137 ~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e 1182 (1211)
....|+++||..|++++.|+...+
T Consensus 237 ----------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 ----------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ----------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred ----------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 124699999999999998887554
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=3.9e-26 Score=248.41 Aligned_cols=240 Identities=39% Similarity=0.603 Sum_probs=198.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+..+|++++|++.++..+++.+.. +..+..+...++ ..++|++|+||||||||+|+++++..++.+++.+++.++..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 4468999999999999999987764 455666666554 34578999999999999999999999999999999988877
Q ss_pred ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+.+.....+..+|+.+....|+++||||||.+...+... ........++++++..+++... +..++++++||.|+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 165 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCch
Confidence 7778777889999999988889999999999987654321 1223345667777778777543 35689999999999
Q ss_pred CCcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHH
Q 000950 1061 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1138 (1211)
Q Consensus 1061 ~Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~ 1138 (1211)
.+|++++| ||+..+.++.|+.++|.+||+.+++...+..+.++..+|..+.||+++||.++|+.|+..+.++
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~------ 239 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 239 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999999 8999999999999999999999988777778889999999999999999999999998776543
Q ss_pred HHHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 000950 1139 KERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1172 (1211)
Q Consensus 1139 ~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Al 1172 (1211)
....|+++||++|+
T Consensus 240 --------------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 --------------------GRRKITMKDLEEAA 253 (254)
T ss_dssp --------------------TCSSBCHHHHHHHT
T ss_pred --------------------cCCCcCHHHHHHHh
Confidence 12469999999875
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1e-24 Score=241.14 Aligned_cols=239 Identities=39% Similarity=0.601 Sum_probs=196.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000950 904 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 983 (1211)
Q Consensus 904 ~~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~ 983 (1211)
+..+|++++|++++++.+++++.. +..+..+...++. .++|++|+||||||||+|+++|+..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 468999999999999999987764 4556666665543 44689999999999999999999999999999999888777
Q ss_pred cccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC
Q 000950 984 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1061 (1211)
Q Consensus 984 ~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~--~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~ 1061 (1211)
+.+.....+..+|+.+....|+++||||||.+...+... .........+++++..+++... +..++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777888999999988889999999999987554321 1122345566777777777542 356899999999999
Q ss_pred CcHHHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000950 1062 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKK 1139 (1211)
Q Consensus 1062 Ld~aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~ 1139 (1211)
+|++++| ||+..+.++.|+.++|.+||+.+++...+..+.++..+|..+.||+++||+++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988877778889999999999999999999999998766542
Q ss_pred HHHHHHhhccCCCCCCCccccccccHHHHHHHH
Q 000950 1140 ERALALAENRASPPLYSSVDVRPLKMDDFKYAH 1172 (1211)
Q Consensus 1140 e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Al 1172 (1211)
....|+++||++|+
T Consensus 264 -------------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -------------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -------------------TCCSBCHHHHHHHT
T ss_pred -------------------CCCCcCHHHHHHHh
Confidence 12469999999885
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=2.2e-26 Score=289.98 Aligned_cols=286 Identities=37% Similarity=0.596 Sum_probs=243.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 984 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~ 984 (1211)
.++|++|+|++.+++.|.+.+..|+.++++|...++ .++.++||+||||||||+||++||.+++.+++.+++.++.+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 578999999999999999999999999999988774 4668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH
Q 000950 985 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1064 (1211)
Q Consensus 985 ~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1064 (1211)
.+..+..++.+|..+....|++|||||||.+++.+... ..+...++...++..+++.... ..+++|++||+++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998766432 2345567778888888877543 67999999999999999
Q ss_pred HHHh--ccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000950 1065 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERA 1142 (1211)
Q Consensus 1065 aLlr--RF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~ 1142 (1211)
++.+ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++++..+|..|+..++++..........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 9998 99999999999999999999999988888888899999999999999999999999998887764321110000
Q ss_pred HHHhhccCCCCCCCccccccccHHHHHHHHHHhccCccccccchhhhhHHHHHhcCCCccc
Q 000950 1143 LALAENRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEGGSRK 1203 (1211)
Q Consensus 1143 ~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~WnDigGl~~~Rk 1203 (1211)
... ........++++||..++....++...+.....+.+.|+|++|++.+|+
T Consensus 436 ~~~---------~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 436 TID---------AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HCC---------HHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred ccc---------hhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 000 0001234688999999999999998887777778999999999998875
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-22 Score=235.26 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=183.0
Q ss_pred ccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 408 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 408 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
.-+|||+..--+ |+.|..|.++.-..|+|+++ |.+---+..+.|||.|||| ....+||||+|++++++++.++.
T Consensus 142 ~p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~--f~~~gi~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 142 VPDSTYDMVGGL--TKQIKEIKEVIELPVKHPEL--FESLGIAQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 357999999999 99999999999999999987 5442233458899999999 68999999999999999999987
Q ss_pred CCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeee
Q 000950 488 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 567 (1211)
Q Consensus 488 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 567 (1211)
+.+.+.+-.
T Consensus 216 s~l~sk~vG----------------------------------------------------------------------- 224 (405)
T 4b4t_J 216 AELVQKYIG----------------------------------------------------------------------- 224 (405)
T ss_dssp GGGSCSSTT-----------------------------------------------------------------------
T ss_pred HHhhccccc-----------------------------------------------------------------------
Confidence 554432211
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHH
Q 000950 568 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 647 (1211)
Q Consensus 568 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k 647 (1211)
+..
T Consensus 225 -----------------------------------------------------------------------------ese 227 (405)
T 4b4t_J 225 -----------------------------------------------------------------------------EGS 227 (405)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------hHH
Confidence 122
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCCccccC
Q 000950 648 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 648 ~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~-----------~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k~ 714 (1211)
..+..+|+.+.. ..|.||||||+|.++.+. ....+.+...|+.+. .+|+||||||++|.
T Consensus 228 ~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~----- 299 (405)
T 4b4t_J 228 RMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI----- 299 (405)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----
T ss_pred HHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----
Confidence 367888888887 899999999999965421 123444555555553 49999999996554
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 792 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~g 792 (1211)
+|+ ||+| ||++++++++||..+
T Consensus 300 -------------------------LDp-------------------------------AllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 300 -------------------------LDP-------------------------------ALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp -------------------------SCH-------------------------------HHHSTTSSCCEEECCCCCHHH
T ss_pred -------------------------CCH-------------------------------hHcCCCcCceEEEcCCcCHHH
Confidence 444 9999 999999999999999
Q ss_pred cchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhh
Q 000950 793 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 871 (1211)
Q Consensus 793 R~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~ 871 (1211)
|.+|+++|++ ..++ .+++++.||..|.||+|+||+.+|++|+..|+++.. ..+...||+.++
T Consensus 324 R~~Il~~~~~--~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------~~vt~~Df~~Al 386 (405)
T 4b4t_J 324 RAEILRIHSR--KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------IHVTQEDFELAV 386 (405)
T ss_dssp HHHHHHHHHT--TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------------SBCCHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHH
Confidence 9999999975 2234 678999999999999999999999999999987421 124567787776
Q ss_pred hhhh
Q 000950 872 SESK 875 (1211)
Q Consensus 872 ~eik 875 (1211)
.++.
T Consensus 387 ~~v~ 390 (405)
T 4b4t_J 387 GKVM 390 (405)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.9e-22 Score=235.21 Aligned_cols=234 Identities=18% Similarity=0.189 Sum_probs=183.2
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+..+|||+..--+ |+.|..|.++.-..|+|+++ |.+.--+..+.|||.|||| ....+||||+|++++++++.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~--f~~~Gi~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPEL--YEEMGIKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHH--HHHHTCCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEEE
Confidence 4568999999999 99999999999999999987 5443344568899999999 6899999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
.+.+.+.+-.
T Consensus 249 ~s~l~sk~vG---------------------------------------------------------------------- 258 (437)
T 4b4t_I 249 GSELIQKYLG---------------------------------------------------------------------- 258 (437)
T ss_dssp SGGGCCSSSS----------------------------------------------------------------------
T ss_pred HHHhhhccCc----------------------------------------------------------------------
Confidence 7555442211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
+.
T Consensus 259 ------------------------------------------------------------------------------es 260 (437)
T 4b4t_I 259 ------------------------------------------------------------------------------DG 260 (437)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------hH
Confidence 12
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------Ch---hhHHHHHHHHhcC--CCCEEEEeeccCCCCcccc
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 713 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~---~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k 713 (1211)
...+..+|+.+.. ..|.||||||+|.++.. +. .....+...++.+ .++|+||||||++|.
T Consensus 261 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~---- 333 (437)
T 4b4t_I 261 PRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET---- 333 (437)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT----
T ss_pred HHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh----
Confidence 2367888888877 88999999999996552 11 2333344444444 358999999996555
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhh
Q 000950 714 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 791 (1211)
Q Consensus 714 ~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~ 791 (1211)
+|+ ||+| ||++++++++||..
T Consensus 334 --------------------------LDp-------------------------------ALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 334 --------------------------LDP-------------------------------ALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp --------------------------CCT-------------------------------TSSCTTTEEEEECCCCCCHH
T ss_pred --------------------------cCH-------------------------------HHhcCCceeEEEEcCCcCHH
Confidence 444 8988 99999999999999
Q ss_pred ccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhh
Q 000950 792 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 870 (1211)
Q Consensus 792 gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a 870 (1211)
+|.+|+++|+. ..++ ++++++.||..|.||+|+||+.+|++|+..|+.+... .+...||..+
T Consensus 357 ~R~~Il~~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~---------------~It~eDf~~A 419 (437)
T 4b4t_I 357 TKKKILGIHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM---------------QVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS---------------CBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999975 2334 6789999999999999999999999999999875321 2456777777
Q ss_pred hhhhh
Q 000950 871 QSESK 875 (1211)
Q Consensus 871 ~~eik 875 (1211)
...+.
T Consensus 420 l~rv~ 424 (437)
T 4b4t_I 420 KERVM 424 (437)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
No 31
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.86 E-value=2.5e-21 Score=242.56 Aligned_cols=211 Identities=16% Similarity=0.211 Sum_probs=141.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 985 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~ 985 (1211)
.+++|++.+++.+.+.+...... .....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 45899999999998887642110 00112343469999999999999999999998 78999999999887765
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCC----
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---- 1061 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~---- 1061 (1211)
.. ...++...++..++||||||||.+ ++..+..+.++++.......+.......++++|+|||.+..
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA-----HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS-----CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc-----CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 54 223334445566799999999987 33333334444433211111111112356899999996543
Q ss_pred --------CcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc-------cc---CCcccHHHHHHHc--CCCcHHHHHHH
Q 000950 1062 --------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL---ASDVDLEGIANMA--DGYSGSDLKNL 1121 (1211)
Q Consensus 1062 --------Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~-------~l---~~dvdL~~LA~~T--~GySgaDL~~L 1121 (1211)
+.+++++||+.+|.|++|+.+++.+|++.++... .. .++..++.|+... ..++.++|+++
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 716 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA 716 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH
Confidence 7899999999999999999999999999988652 11 1333456666532 35677899999
Q ss_pred HHHHHhhhhHHH
Q 000950 1122 CVTAAHCPIREI 1133 (1211)
Q Consensus 1122 ~~~Aa~~Airrl 1133 (1211)
++.+...++.+.
T Consensus 717 i~~~v~~~l~~~ 728 (758)
T 3pxi_A 717 IQKHVEDRLSEE 728 (758)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877666553
No 32
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=9.7e-21 Score=237.02 Aligned_cols=211 Identities=15% Similarity=0.224 Sum_probs=142.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i---~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~--- 983 (1211)
+++|++.+++.+...+... ..++ .+|..++||+||||||||++|+++|+.++.+|+.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 5789999999888876531 1122 2454579999999999999999999999999999999886542
Q ss_pred --cccchHH-----HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 984 --WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 984 --~~G~~e~-----~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
.+|.... ....+....++..++||||||||.+ .+..+..+.++++.......+...-.-.+++||+||
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 2222111 1122344555666799999999987 222222333333321111000000011468899999
Q ss_pred CCCC-------------------------CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc---------cc-CCcc
Q 000950 1057 NRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---------EL-ASDV 1101 (1211)
Q Consensus 1057 N~p~-------------------------~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~---------~l-~~dv 1101 (1211)
|... .+.+++++||+.+|.|++|+.+++..|++.++.+. .+ .++.
T Consensus 606 N~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 685 (758)
T 1r6b_X 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE 685 (758)
T ss_dssp CSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHH
T ss_pred CcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHH
Confidence 9743 57889999999999999999999999999988742 11 1344
Q ss_pred cHHHHHHHc--CCCcHHHHHHHHHHHHhhhhHHH
Q 000950 1102 DLEGIANMA--DGYSGSDLKNLCVTAAHCPIREI 1133 (1211)
Q Consensus 1102 dL~~LA~~T--~GySgaDL~~L~~~Aa~~Airrl 1133 (1211)
.++.|+... ..+..++|.++++.+...++.+.
T Consensus 686 a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 686 ARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp HHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 466677654 35667899999888887766653
No 33
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=4.9e-22 Score=222.46 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=130.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHH----HhcCCcEEEEccchhhh
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k~~PsILfIDEID~L~ 1016 (1211)
.++|.++||+||||||||+||++||++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 45668999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCCch-HHHHHHHHHhhhhhccCCc---------ccCCccEEEEEecCCCCCCcHHHHh--ccCcccccCCCCHHHH
Q 000950 1017 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1084 (1211)
Q Consensus 1017 ~~r~s~~~-~e~l~~il~~LL~~ldgl~---------~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v~lPd~eeR 1084 (1211)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432111 1122344556666655332 1123679999999999999999998 8886665 6899999
Q ss_pred HHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHH
Q 000950 1085 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1085 ~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
.+|++.++... ++++..++..+.||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999887643 4668899999999999988643
No 34
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7.3e-22 Score=232.10 Aligned_cols=236 Identities=16% Similarity=0.171 Sum_probs=183.8
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 000950 406 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 485 (1211)
Q Consensus 406 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 485 (1211)
-+.-+|||+..--+ ++.|..|.++.-..|+|++. |.+.--+..+.|||.|||| ....+||||+|++++++++.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPG--TGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 35678999999999 99999999999999999886 5443344568999999999 689999999999999999999
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCee
Q 000950 486 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 565 (1211)
Q Consensus 486 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 565 (1211)
+.+.+.+.+-.
T Consensus 247 ~~s~l~~~~vG--------------------------------------------------------------------- 257 (434)
T 4b4t_M 247 AAPQLVQMYIG--------------------------------------------------------------------- 257 (434)
T ss_dssp EGGGGCSSCSS---------------------------------------------------------------------
T ss_pred ehhhhhhcccc---------------------------------------------------------------------
Confidence 87555442211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchh
Q 000950 566 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 645 (1211)
Q Consensus 566 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 645 (1211)
.
T Consensus 258 -------------------------------------------------------------------------------e 258 (434)
T 4b4t_M 258 -------------------------------------------------------------------------------E 258 (434)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------h
Confidence 1
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hh---hHHHHHHHHhcCC--CCEEEEeeccCCCCccc
Q 000950 646 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENLP--SNVVVIGSHTQLDSRKE 712 (1211)
Q Consensus 646 ~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--------~~---~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~ 712 (1211)
....+..+|+.+.. ..|.||||||+|.++... .+ ....+...|+.+. ++|+||||||++|.
T Consensus 259 se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~--- 332 (434)
T 4b4t_M 259 GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV--- 332 (434)
T ss_dssp HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC---
T ss_pred HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh---
Confidence 12367788888877 889999999999966521 12 2333444455553 38999999996554
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhh
Q 000950 713 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 790 (1211)
Q Consensus 713 k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~ 790 (1211)
+|+ ||+| ||++++++++||.
T Consensus 333 ---------------------------LD~-------------------------------AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 333 ---------------------------LDP-------------------------------ALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp ---------------------------CCT-------------------------------TTCSTTSEEEEEECCCCCH
T ss_pred ---------------------------cCH-------------------------------hHhcCCceeEEEEeCCcCH
Confidence 444 8888 9999999999999
Q ss_pred hccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHh
Q 000950 791 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 869 (1211)
Q Consensus 791 ~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~ 869 (1211)
.+|.+|+++|++. -++ .+++++.||..|.||+|+||+.+|+.|+..|+.+... .+...||..
T Consensus 355 ~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~---------------~i~~~Df~~ 417 (434)
T 4b4t_M 355 DSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS---------------SVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHHH--SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHH
Confidence 9999999999752 233 6789999999999999999999999999999875321 235667777
Q ss_pred hhhhhhh
Q 000950 870 IQSESKS 876 (1211)
Q Consensus 870 a~~eik~ 876 (1211)
+..++++
T Consensus 418 Al~~v~~ 424 (434)
T 4b4t_M 418 GISEVQA 424 (434)
T ss_dssp HHHSCSS
T ss_pred HHHHHhC
Confidence 7655543
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-21 Score=230.40 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=182.5
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+.-+|||+..--+ ++.|..|.++.-..|+|+++ |.+-=-+..+.|||.|||| ....+||||||++++++++.++
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--f~~~g~~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEI--FQRVGIKPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 4568999999998 99999999999999999886 4332234568999999999 6899999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
.+.+.+.+..
T Consensus 248 ~s~l~sk~~G---------------------------------------------------------------------- 257 (437)
T 4b4t_L 248 ASGIVDKYIG---------------------------------------------------------------------- 257 (437)
T ss_dssp GGGTCCSSSS----------------------------------------------------------------------
T ss_pred hhhhccccch----------------------------------------------------------------------
Confidence 7555443221
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
..
T Consensus 258 ------------------------------------------------------------------------------es 259 (437)
T 4b4t_L 258 ------------------------------------------------------------------------------ES 259 (437)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 713 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~---~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k 713 (1211)
...+..+|+.+.. .+|.||||||+|.++.. . ....+.|...|+.+. ++|+||||||++|.
T Consensus 260 e~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~---- 332 (437)
T 4b4t_L 260 ARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT---- 332 (437)
T ss_dssp HHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS----
T ss_pred HHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh----
Confidence 2367778888877 89999999999996542 1 122334445555553 48999999996554
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhh
Q 000950 714 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 791 (1211)
Q Consensus 714 ~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~ 791 (1211)
+|+ ||+| ||++++++++||..
T Consensus 333 --------------------------LDp-------------------------------AllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 333 --------------------------LDP-------------------------------ALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp --------------------------SCT-------------------------------TTTSTTSEEEEECCCCCCHH
T ss_pred --------------------------hCH-------------------------------HHhCCCccceeeecCCcCHH
Confidence 444 8887 79999999999999
Q ss_pred ccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhh
Q 000950 792 GQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 871 (1211)
Q Consensus 792 gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~ 871 (1211)
+|.+|+++|+... +...+++++.||..|.||+|+||+.+|++|+..|+++... .+...+|..+.
T Consensus 356 ~R~~Il~~~~~~~-~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~---------------~i~~~d~~~Al 419 (437)
T 4b4t_L 356 GRLEIFKIHTAKV-KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD---------------HINPDDLMKAV 419 (437)
T ss_dssp HHHHHHHHHHHTS-CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CCCHHHHHHHH
Confidence 9999999997521 1226789999999999999999999999999999875321 24566777776
Q ss_pred hhhhh
Q 000950 872 SESKS 876 (1211)
Q Consensus 872 ~eik~ 876 (1211)
.++.+
T Consensus 420 ~~v~~ 424 (437)
T 4b4t_L 420 RKVAE 424 (437)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 36
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.2e-21 Score=226.80 Aligned_cols=234 Identities=18% Similarity=0.146 Sum_probs=181.0
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+.-+|||+..--+ ++.|..|.++....|++++. |.+-=-+..+.|||.|||| ....+||||+|++++++++.++
T Consensus 202 e~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~--f~~~Gi~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 202 EKPDVTYSDVGGC--KDQIEKLREVVELPLLSPER--FATLGIDPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SSCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHH--HHHCCCCCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 3457999999998 99999999999999999886 4331134568999999999 6899999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
.+.|.+.+-.
T Consensus 276 ~s~L~sk~vG---------------------------------------------------------------------- 285 (467)
T 4b4t_H 276 GSELVQKYVG---------------------------------------------------------------------- 285 (467)
T ss_dssp GGGGCCCSSS----------------------------------------------------------------------
T ss_pred hHHhhcccCC----------------------------------------------------------------------
Confidence 7555442211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
..
T Consensus 286 ------------------------------------------------------------------------------es 287 (467)
T 4b4t_H 286 ------------------------------------------------------------------------------EG 287 (467)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcC--CCCEEEEeeccCCCCcccc
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 713 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~-----------~~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k 713 (1211)
...+..+|+.+.. ..|.||||+|+|.++... ......+...|+.+ .++|+||||||+++.
T Consensus 288 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~---- 360 (467)
T 4b4t_H 288 ARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT---- 360 (467)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS----
T ss_pred HHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc----
Confidence 2267788888877 889999999999965521 12233344444544 358999999996554
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhh
Q 000950 714 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 791 (1211)
Q Consensus 714 ~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~ 791 (1211)
+|+ ||+| ||++++++++||..
T Consensus 361 --------------------------LDp-------------------------------ALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 361 --------------------------LDP-------------------------------ALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp --------------------------BCH-------------------------------HHHSTTTCCEEECCCCCCHH
T ss_pred --------------------------CCh-------------------------------hhhccccccEEEEeCCcCHH
Confidence 444 9999 99999999999999
Q ss_pred ccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhh
Q 000950 792 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 870 (1211)
Q Consensus 792 gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a 870 (1211)
+|.+|+++|++ .-++ .+++++.||..|.||+|+||+.+|++|+..|+++... .+...+|..+
T Consensus 384 ~R~~Ilk~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~---------------~it~~Df~~A 446 (467)
T 4b4t_H 384 GRANIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDFLKA 446 (467)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999975 2234 5789999999999999999999999999999875321 2345677776
Q ss_pred hhhhh
Q 000950 871 QSESK 875 (1211)
Q Consensus 871 ~~eik 875 (1211)
+.++.
T Consensus 447 l~kV~ 451 (467)
T 4b4t_H 447 VDKVI 451 (467)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-20 Score=221.24 Aligned_cols=216 Identities=20% Similarity=0.263 Sum_probs=173.5
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+..+|||+..--+ +..|.-|.++....|+|+++ |.+-=-+..+.|||.|||| ....+||||+|++++++++.++
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--~~~~g~~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADL--YEQIGIDPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEEe
Confidence 4567999999999 99999999999999999886 4331124467899999999 6999999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
.+.+.+.+-.
T Consensus 239 ~~~l~~~~~G---------------------------------------------------------------------- 248 (428)
T 4b4t_K 239 GSEFVHKYLG---------------------------------------------------------------------- 248 (428)
T ss_dssp GGGTCCSSCS----------------------------------------------------------------------
T ss_pred cchhhccccc----------------------------------------------------------------------
Confidence 7554432211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
..
T Consensus 249 ------------------------------------------------------------------------------e~ 250 (428)
T 4b4t_K 249 ------------------------------------------------------------------------------EG 250 (428)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------hh
Confidence 11
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCCcccc
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 713 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~---~~~~~~i~s~L~~L~--g~VvVIgs~~~~d~~k~k 713 (1211)
...+..+|+.+.. ..|.||||||+|.++.. + .+..+.|...|+.+. .+|+||||||++|.
T Consensus 251 e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~---- 323 (428)
T 4b4t_K 251 PRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT---- 323 (428)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS----
T ss_pred HHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh----
Confidence 2257778888877 88999999999997652 1 234555666666663 48999999996555
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhc-chhh
Q 000950 714 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD-VETL 790 (1211)
Q Consensus 714 ~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~-Lpd~ 790 (1211)
+|+ ||+| ||+++++++ +|+.
T Consensus 324 --------------------------LD~-------------------------------AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 324 --------------------------LDP-------------------------------ALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp --------------------------CCH-------------------------------HHHSSSSEEEEEECCSSCCH
T ss_pred --------------------------cCh-------------------------------hhhcCCcceEEEEcCCCCCH
Confidence 444 9999 999999995 9999
Q ss_pred hccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 791 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 791 ~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
.+|..|+++|+. ..++ ++++++.||..|.||+|+||+.+|++|+..|+++
T Consensus 347 ~~R~~Il~~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 347 RERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHHHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999975 2234 6789999999999999999999999999999875
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.81 E-value=4.8e-19 Score=224.84 Aligned_cols=209 Identities=17% Similarity=0.265 Sum_probs=141.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 983 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~-- 983 (1211)
++++|.+.+++.+...+...... -....+|..++||+||||||||++|++|++.+ +.+|+.++|+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g-----~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG-----CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 56899999999988877531100 00012344579999999999999999999998 789999999876543
Q ss_pred ---cccchHHH-----HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCc
Q 000950 984 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1048 (1211)
Q Consensus 984 ---~~G~~e~~-----I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-------~~~ 1048 (1211)
.+|....+ ...+....+...++||||||||.+ ++ .+.+.|+..++..... +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----~~-------~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----HP-------DVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGS-----CH-------HHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----CH-------HHHHHHHHHhccCceECCCCCEeccC
Confidence 22221111 123334445555689999999987 22 2333333333321100 114
Q ss_pred cEEEEEecCC--------------------------CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc------
Q 000950 1049 RVLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE------ 1096 (1211)
Q Consensus 1049 ~VlVIaTTN~--------------------------p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~------ 1096 (1211)
+++||+|||. ...+.++|+.||+.++.+.+|+.++...|++.++....
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999997 23567889999999999999999999999999887421
Q ss_pred ---c-CCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHH
Q 000950 1097 ---L-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1134 (1211)
Q Consensus 1097 ---l-~~dvdL~~LA~~T~--GySgaDL~~L~~~Aa~~Airrll 1134 (1211)
+ .++..++.|+.... .++.++|+++++.+...++.+.+
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 13444677777765 67889999999999887776643
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=2.3e-19 Score=199.55 Aligned_cols=215 Identities=16% Similarity=0.193 Sum_probs=161.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 980 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LArAIA~el-------g~~fi~I~~seL 980 (1211)
+|+|++.+++.|.+.+..+.. +..+.+.++ ..+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998876442 333333332 2344579999999999999999999988 348999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 981 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
.+.++|.....+..+|..+ .++||||||+|.|+..+..... ...+++.|+..++. ...+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~---~~~~~~~Ll~~l~~----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDY---GQEAIEILLQVMEN----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CC---THHHHHHHHHHHHH----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccc---cHHHHHHHHHHHhc----CCCCEEEEEeCChHH
Confidence 9999999888888888877 4589999999999755432111 12233444444443 225688888887643
Q ss_pred -----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHH-------cCCCcHHHHHHHHHHHHh
Q 000950 1061 -----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM-------ADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1061 -----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~-------T~GySgaDL~~L~~~Aa~ 1127 (1211)
.+++++++||+..+.|+.|+.+++.+|++.++...... ++..+..++.. ....+++++.++++.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999876543 34445666665 223468999999999998
Q ss_pred hhhHHHHH
Q 000950 1128 CPIREILE 1135 (1211)
Q Consensus 1128 ~Airrlle 1135 (1211)
.+..+++.
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887654
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=1.3e-20 Score=223.21 Aligned_cols=201 Identities=20% Similarity=0.238 Sum_probs=136.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 982 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s 982 (1211)
...|++++|++++++.+.+++.. +. .+ ..|++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~-------~~-~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVEL-------IK-SK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HH-TT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhchhhccCHHHHHHHHHHHHHH-------HH-hC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 45789999999999999887753 11 12 33568999999999999999999999998 9999999999999
Q ss_pred ccccchHHHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCch---HHHHHHHHHh---------------hhhhccC
Q 000950 983 KWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKNE---------------FMVNWDG 1041 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~s~~~---~e~l~~il~~---------------LL~~ldg 1041 (1211)
.+.|..+. ++.+|..| +...|+||||||||.+++.+..... .....+++.+ ++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999999 7888999999999999987754311 1122222222 3333321
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHh--ccCc--ccccCCCC--HHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1042 LRTKDKERVLVLAATNRPFDLDEAVVR--RLPR--RLMVNLPD--APNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1042 l~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~--~I~v~lPd--~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
........++|++|||+++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 111223456667999999999999876 8987 56777774 4778877765432 368899999999 9
Q ss_pred HHHHHHHHH
Q 000950 1116 SDLKNLCVT 1124 (1211)
Q Consensus 1116 aDL~~L~~~ 1124 (1211)
+||.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999954
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=8.3e-18 Score=186.06 Aligned_cols=247 Identities=20% Similarity=0.257 Sum_probs=161.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccch
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 988 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~~~G~~ 988 (1211)
+++|++.+++.+...+..++.+..+........++.++||+||||||||++|+++++.++.+++.++|+.+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4899999999999887653332221111000124578999999999999999999999999999999998765 455532
Q ss_pred -HHHHHHHHHHH-----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcc------cCCccEEEEEe-
Q 000950 989 -EKYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAA- 1055 (1211)
Q Consensus 989 -e~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~------k~~~~VlVIaT- 1055 (1211)
...++.+|..+ ....++||||||+|.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666532 112368999999999975543222222222234445544443210 12246788888
Q ss_pred ---cCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHH----HHh-------hccc---CCcccHHHHHHHcC-------
Q 000950 1056 ---TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV----ILA-------KEEL---ASDVDLEGIANMAD------- 1111 (1211)
Q Consensus 1056 ---TN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~----lL~-------k~~l---~~dvdL~~LA~~T~------- 1111 (1211)
++.+..+++++++||+..+.|+.|+.+++.+|++. ++. .... .++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 46778999999999998899999999999999983 221 1221 23444666776652
Q ss_pred CCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1112 GYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1112 GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
+.+.+.+.++++.+...+..+. . ........|+.+|++.++.+..
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~------------~--------~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA------------S--------DMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG------------G--------GCTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCC------------c--------cccCCEEEEeeHHHHHHHHhhh
Confidence 4567788888877764432221 0 0011223599999999987653
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=5.4e-17 Score=184.84 Aligned_cols=219 Identities=18% Similarity=0.205 Sum_probs=154.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 982 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~I~~seL~s 982 (1211)
..+|++++|.+..++.+..++.. +..+ ..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34599999999999887665542 1111 234578999999999999999999999974 899998876443
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHHhc---------CC
Q 000950 983 KWFGE-------------------------------------------------GEKYVKAVFSLASKI---------AP 1004 (1211)
Q Consensus 983 ~~~G~-------------------------------------------------~e~~I~~lF~~A~k~---------~P 1004 (1211)
.+.+. ....++..|..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 123344455444321 26
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec-----------CCCCCCcHHHHhccCcc
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPRR 1073 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT-----------N~p~~Ld~aLlrRF~~~ 1073 (1211)
+||||||+|.|. . ...+.|+..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~--------~----~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------I----ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSB--------H----HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccC--------h----HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 899999999882 1 1223333333321 2345555554 3578899999999955
Q ss_pred cccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCC
Q 000950 1074 LMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASP 1152 (1211)
Q Consensus 1074 I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~ 1152 (1211)
+.|++|+.+++.+|++..+...... ++..+..|+..+.+.+++++.++|+.|+..+..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------------- 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------------- 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 8999999999999999998875443 4556888999998668899999999988765442
Q ss_pred CCCCccccccccHHHHHHHHHHh
Q 000950 1153 PLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1153 ~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
....|+.+|+++|+..+
T Consensus 314 ------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------TCSSBCHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHh
Confidence 22579999999999874
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.72 E-value=1.9e-16 Score=178.64 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=144.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|++++|.+..++.+...+..... . ..++.++||+||||||||++|++++++++.+|+.++|..+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 4799999999999999998864221 1 224568999999999999999999999999999999976531
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccC--------CcccCCccEEEEEecC
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG--------LRTKDKERVLVLAATN 1057 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldg--------l~~k~~~~VlVIaTTN 1057 (1211)
...+..++.. ...+++|||||||.+. ...+..+..+++.....+-+ ... ...++++|++||
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~atn 162 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI-DLPKFTLIGATT 162 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----HHHHHHHHHHHHTSCC---------CCCCCC-CCCCCEEEEEES
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----HHHHHHHHHHHHhccchhhcccCccccceec-CCCCeEEEEeCC
Confidence 2233333332 2357999999999882 22333343433332211100 000 112589999999
Q ss_pred CCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1058 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1058 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
....+++++++||+..+.++.|+.+++..+++.++...... ++..+..|+..+.| +++++.++++.+...+
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876543 44557778886655 5678888888775433
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=6.1e-17 Score=177.90 Aligned_cols=180 Identities=23% Similarity=0.278 Sum_probs=128.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1020 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~-s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1020 (1211)
.++.++||+||||||||++|+++|+.++.+|+.+++++.. +...+.....++.+|..+....++||||||||.|++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 4557899999999999999999999999999999987622 211122235678899999888899999999999976543
Q ss_pred C-CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcH-HHHhccCcccccCCCCHHHHHHHHHHHHhhcccC
Q 000950 1021 N-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA 1098 (1211)
Q Consensus 1021 s-~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~ 1098 (1211)
. ...+ ..+++.+...+++... ...+++||+|||.++.+++ .+.+||...+.+ |+..+|.+|.+.+..... .
T Consensus 142 ~~~~~~---~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~--p~l~~r~~i~~i~~~~~~-~ 214 (272)
T 1d2n_A 142 IGPRFS---NLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEALELLGN-F 214 (272)
T ss_dssp TTTBCC---HHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--CCEEEHHHHHHHHHHHTC-S
T ss_pred CChhHH---HHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcC--CCccHHHHHHHHHHhcCC-C
Confidence 2 1222 2334444444444322 2367899999999988887 677799866655 555556666655544433 3
Q ss_pred CcccHHHHHHHcCCC----cHHHHHHHHHHHHhh
Q 000950 1099 SDVDLEGIANMADGY----SGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1099 ~dvdL~~LA~~T~Gy----SgaDL~~L~~~Aa~~ 1128 (1211)
++.++..++..+.|| +.+++.++++.|...
T Consensus 215 ~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 215 KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 566789999999997 577788887777643
No 45
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.67 E-value=2.1e-16 Score=160.82 Aligned_cols=110 Identities=25% Similarity=0.379 Sum_probs=97.8
Q ss_pred CCCcchhhccccCCCCceeEecceEEEecccccceeecCCC---------CCccceEEEEeecC-CcceEEEEEecCcce
Q 000950 90 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENG-GPSGALLEITGGKGE 159 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i~~~~~tvG~~~~c~~~l~d~~---------~s~~~Ckl~~~~~~-g~~~a~le~~~~~g~ 159 (1211)
...|||+|+++...++++.|....++|||+..||+.|.|+. +|..||+|.+...+ +....+|+|.|+|||
T Consensus 26 ~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT 105 (149)
T 1gxc_A 26 TPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT 105 (149)
T ss_dssp ---CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCE
T ss_pred CCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCe
Confidence 45689999999999999999999999999999999999995 99999999987642 233589999999999
Q ss_pred EEECCeeeCCCceEEeeCCCEEEEccCCceeeEeeccCccc
Q 000950 160 VEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 200 (1211)
Q Consensus 160 v~vng~~~~k~~~~~L~~Gdei~f~~~~~~ayifq~l~~~~ 200 (1211)
||||+++.++..+.|+.||+|.|+.....+|+|+++..++
T Consensus 106 -~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 106 -FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp -EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred -EECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 8999999999999999999999999988999999987765
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=9.2e-16 Score=171.49 Aligned_cols=202 Identities=20% Similarity=0.229 Sum_probs=144.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|++++|.+..++.+.+.+.... .. ..++.++||+||||||||++|+++++.++.+|+.++|+.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------AR--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------HH--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------cc--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 478999999999999988775311 11 123467999999999999999999999999999999877532
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-------CCccEEEEEecCC
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNR 1058 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-------~~~~VlVIaTTN~ 1058 (1211)
...+...|..+ ...+++|||||||.+. ...+..+..+++.....+-+.... ...++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 12223333221 1357899999999882 223334444444332111110000 1135889999999
Q ss_pred CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1059 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1059 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+..+++.+.+||..++.++.|+.+++..+++.++...... ++..+..|+..+.|+ ++++.++++.+...+
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998765443 445578888888664 678889988886554
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=1.9e-16 Score=181.57 Aligned_cols=222 Identities=20% Similarity=0.285 Sum_probs=147.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc-cccch
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGEG 988 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k-~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~-~~G~~ 988 (1211)
|+|++.+++.+...+.....+...... .....++.++||+||||||||++|++||+.++.+|+.++|+++... ++|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999999888533322211110 1223356789999999999999999999999999999999987743 77765
Q ss_pred -HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCc--hHHHHHHHHHhhhhhccCCc---------cc-------
Q 000950 989 -EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLR---------TK------- 1045 (1211)
Q Consensus 989 -e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~s~~--~~e~l~~il~~LL~~ldgl~---------~k------- 1045 (1211)
...+..+|..+ ....++||||||||.+...+.+.. .......+.+.|+..+++.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677777766 445679999999999976654322 11112235555665555321 00
Q ss_pred -CCccEEEEEecCCC----------CC-----------------------------------CcHHHHhccCcccccCCC
Q 000950 1046 -DKERVLVLAATNRP----------FD-----------------------------------LDEAVVRRLPRRLMVNLP 1079 (1211)
Q Consensus 1046 -~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRF~~~I~v~lP 1079 (1211)
...++++|++++.. .. +.++++.||+.++.+.+|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 11234455554431 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHhhc-------cc---CCcccHHHHHHH--cCCCcHHHHHHHHHHHHhhhhHH
Q 000950 1080 DAPNREKIIRV----ILAKE-------EL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIRE 1132 (1211)
Q Consensus 1080 d~eeR~eILk~----lL~k~-------~l---~~dvdL~~LA~~--T~GySgaDL~~L~~~Aa~~Airr 1132 (1211)
+.+++.+|+.. ++... .. .++..++.|+.. ...+..++|+++++.+...++.+
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999886 43321 11 133345666653 34566788888888887665544
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=175.00 Aligned_cols=218 Identities=18% Similarity=0.248 Sum_probs=165.8
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc-CCeEEEE
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 485 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f-~a~LLil 485 (1211)
+..+++|+.+.-+ +..|..|.++.-.+++++++ |.. .....+.|||.||+| ....+||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGG--SCT-TCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHH--HhC-CCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 3457899999888 99999999999889999887 443 334568899999999 68999999999998 7776666
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCee
Q 000950 486 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 565 (1211)
Q Consensus 486 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 565 (1211)
+...+.+.+.
T Consensus 78 ~~~~l~~~~~---------------------------------------------------------------------- 87 (322)
T 1xwi_A 78 SSSDLVSKWL---------------------------------------------------------------------- 87 (322)
T ss_dssp ECCSSCCSSC----------------------------------------------------------------------
T ss_pred EhHHHHhhhh----------------------------------------------------------------------
Confidence 5433221110
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchh
Q 000950 566 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 645 (1211)
Q Consensus 566 ~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~ 645 (1211)
| .
T Consensus 88 ---g---------------------------------------------------------------------------~ 89 (322)
T 1xwi_A 88 ---G---------------------------------------------------------------------------E 89 (322)
T ss_dssp ---C---------------------------------------------------------------------------S
T ss_pred ---h---------------------------------------------------------------------------H
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC---CCCEEEEeeccCCCCccccC
Q 000950 646 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 646 ~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--------~~~~~~i~s~L~~L---~g~VvVIgs~~~~d~~k~k~ 714 (1211)
....+..+|+.+.. .+|.||||||+|.+.... .++.+.+...|+.+ .++|+|||++|++
T Consensus 90 ~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~------- 159 (322)
T 1xwi_A 90 SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP------- 159 (322)
T ss_dssp CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT-------
T ss_pred HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc-------
Confidence 01245667776655 789999999999964421 12334444555554 4689999999943
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 794 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~ 794 (1211)
+.+++ +++|||++.+++++|+...|.
T Consensus 160 -----------------------~~ld~-------------------------------al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 160 -----------------------WVLDS-------------------------------AIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp -----------------------TTSCH-------------------------------HHHHTCCEEEECCCCCHHHHH
T ss_pred -----------------------ccCCH-------------------------------HHHhhcCeEEEeCCcCHHHHH
Confidence 33443 888999999999999999999
Q ss_pred hhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 795 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 795 ~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
.|++.|.......+++.+++.|+..|.||+|+||+.+|+.|...++++.
T Consensus 186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999987544445688999999999999999999999999999998765
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=2.8e-16 Score=190.23 Aligned_cols=231 Identities=19% Similarity=0.248 Sum_probs=151.4
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-----
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 982 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s----- 982 (1211)
+++++|++++++.+.+.+...... . ..+...+||+||||||||+||++||..++.+++.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 356999999999998876532211 1 124567999999999999999999999999999999876433
Q ss_pred ----ccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc-----------CC
Q 000950 983 ----KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DK 1047 (1211)
Q Consensus 983 ----~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k-----------~~ 1047 (1211)
.++|.....+...|..+....| ||||||||.+...... ...+.|+..++..... ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4556666667777887766665 9999999998543211 1223344444322110 11
Q ss_pred ccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh-----cccC------CcccHHHHHH-HcCCCcH
Q 000950 1048 ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EELA------SDVDLEGIAN-MADGYSG 1115 (1211)
Q Consensus 1048 ~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k-----~~l~------~dvdL~~LA~-~T~GySg 1115 (1211)
.+++||+|||.++.+++++++|| .+|.++.|+.+++.+|++.++.. ..+. ++..+..++. .+...+.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 56899999999999999999999 57999999999999999987732 2221 2333555555 3333556
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1116 SDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
++|++.+..++..+..+.+.. ......|+.+|+.+++..-+
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~--------------------~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAE--------------------ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------------------CCSCCEECTTTTHHHHCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhc--------------------CCcceecCHHHHHHHhCCcc
Confidence 778777777665544443210 11335789999999886543
No 50
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.64 E-value=2.8e-16 Score=153.06 Aligned_cols=106 Identities=26% Similarity=0.461 Sum_probs=93.1
Q ss_pred CcchhhccccC--CCCceeEecceEEEecccccceeecCC-CCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeC
Q 000950 92 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 168 (1211)
Q Consensus 92 ~pW~~L~s~~~--~~p~~~i~~~~~tvG~~~~c~~~l~d~-~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~ 168 (1211)
.|||+|+++.. ..+.+.+....++|||...||+.|.|. .+|..||+|....++|. .+|+|.|+||| +|||+++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~--~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--VTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCC--EEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCe--EEEEECCcCCc-EECCEEcC
Confidence 59999999865 667899999999999999999999986 89999999998644555 78888888999 89999999
Q ss_pred CCceEEeeCCCEEEEccCC-----ceeeEeeccCccc
Q 000950 169 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDDT 200 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~-----~~ayifq~l~~~~ 200 (1211)
++..+.|+.||+|.|+... +++|+|+++..+.
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~~ 115 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEKQ 115 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC--
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEcccccC
Confidence 9999999999999999864 7999999987654
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.63 E-value=9.3e-16 Score=176.15 Aligned_cols=229 Identities=18% Similarity=0.251 Sum_probs=161.2
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000950 395 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 474 (1211)
Q Consensus 395 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 474 (1211)
+++.+...| ..+.-.++|+++..+ +..|..|..+...+++++++ |.. .....+.|||.||+| ....+||||+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~--~~~-~~~~~~~iLL~GppG--tGKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSAI-LSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHL--FKG-NRKPTSGILLYGPPG--TGKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGG--GCS-SCCCCCCEEEECSTT--SCHHHHHHHH
T ss_pred HHHHHhhhh-cccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--Hhc-CCCCCceEEEECCCC--CcHHHHHHHH
Confidence 344444333 345668999998776 89999999999889998877 433 334567899999999 6899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 000950 475 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 554 (1211)
Q Consensus 475 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1211)
|++++.+++.++...+.+.+
T Consensus 105 a~~~~~~~~~v~~~~l~~~~------------------------------------------------------------ 124 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVSKW------------------------------------------------------------ 124 (355)
T ss_dssp HHHHTCEEEEEEHHHHHSCC------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhhhh------------------------------------------------------------
Confidence 99999888877543221100
Q ss_pred CCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccc
Q 000950 555 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 634 (1211)
Q Consensus 555 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~ 634 (1211)
+|.
T Consensus 125 -------------~g~---------------------------------------------------------------- 127 (355)
T 2qp9_X 125 -------------MGE---------------------------------------------------------------- 127 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------cch----------------------------------------------------------------
Confidence 000
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----C----hhhHHHHHHHHhcC---CCCEEEEee
Q 000950 635 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIGS 703 (1211)
Q Consensus 635 ~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~----~----~~~~~~i~s~L~~L---~g~VvVIgs 703 (1211)
....++.+|+.+.. ..|.||||||+|.+... . .++.+.+...|+.+ ..+|+|||+
T Consensus 128 -----------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 128 -----------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 01145666766655 68999999999995532 1 23344455555544 468999999
Q ss_pred ccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHh
Q 000950 704 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 783 (1211)
Q Consensus 704 ~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~ 783 (1211)
+|+++. +++ +++|||++.+
T Consensus 194 tn~~~~------------------------------ld~-------------------------------al~rRf~~~i 212 (355)
T 2qp9_X 194 TNIPWQ------------------------------LDS-------------------------------AIRRRFERRI 212 (355)
T ss_dssp ESCGGG------------------------------SCH-------------------------------HHHHTCCEEE
T ss_pred cCCccc------------------------------CCH-------------------------------HHHcccCEEE
Confidence 995332 332 8888998889
Q ss_pred hhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 784 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 784 e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
++++|+...|..|++.|.......+++.+++.|+..+.||+|+||+.+|..|...|+.+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886533334678899999999999999999999999999999864
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.62 E-value=2.9e-14 Score=148.01 Aligned_cols=183 Identities=22% Similarity=0.246 Sum_probs=128.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 980 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL 980 (1211)
.+|++++|.+..++.+.+.+.. . ...++||+||+|+|||++|+++++++ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 5788999999999999988752 1 12359999999999999999999886 466888888654
Q ss_pred ccccccchHHHHHHHHHHHH------hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 981 TSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~------k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
.+. ..+...+.... ...+.||||||+|.+.. .....+ +..++. ...++.+|+
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~~~~l-------~~~l~~----~~~~~~~i~ 137 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----DAQAAL-------RRTMEM----YSKSCRFIL 137 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----HHHHHH-------HHHHHH----TTTTEEEEE
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----HHHHHH-------HHHHHh----cCCCCeEEE
Confidence 321 12222222222 24578999999998831 112222 222221 124578888
Q ss_pred ecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1055 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1055 TTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
+||.+..+++.+.+||. .+.++.|+.+++.++++.++...+.. ++..+..|+..+.| +.+.+.++++.++
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999999999996 89999999999999999988765443 44557778877766 4555555555554
No 53
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.62 E-value=8.9e-16 Score=173.46 Aligned_cols=219 Identities=18% Similarity=0.216 Sum_probs=167.2
Q ss_pred CccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 407 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 407 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+.-+++|+++.-+ +..|..|..+...+++++++. ... ....+.|||.||+| ....+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~--~~~-~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLF--KGN-RKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGC--CTT-CCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHH--hcC-CCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 4557899998877 999999999998888888773 332 33467899999999 6899999999999988887775
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeee
Q 000950 487 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 566 (1211)
Q Consensus 487 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 566 (1211)
...+.+.+
T Consensus 84 ~~~l~~~~------------------------------------------------------------------------ 91 (322)
T 3eie_A 84 SSDLVSKW------------------------------------------------------------------------ 91 (322)
T ss_dssp HHHHHTTT------------------------------------------------------------------------
T ss_pred hHHHhhcc------------------------------------------------------------------------
Confidence 42221100
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhH
Q 000950 567 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 646 (1211)
Q Consensus 567 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~ 646 (1211)
....
T Consensus 92 ----------------------------------------------------------------------------~g~~ 95 (322)
T 3eie_A 92 ----------------------------------------------------------------------------MGES 95 (322)
T ss_dssp ----------------------------------------------------------------------------GGGH
T ss_pred ----------------------------------------------------------------------------cchH
Confidence 0011
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC---CCCEEEEeeccCCCCccccCC
Q 000950 647 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 715 (1211)
Q Consensus 647 k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L---~g~VvVIgs~~~~d~~k~k~~ 715 (1211)
...+..+|+.+.. .+|.||||||+|.+... ..++.+.+...|+.+ .++|+|||++|+++.
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~------ 166 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ------ 166 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh------
Confidence 2256677777766 78999999999996542 233445555556544 568999999994333
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccch
Q 000950 716 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 795 (1211)
Q Consensus 716 ~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~ 795 (1211)
+++ +++|||++.+++++|+...|.+
T Consensus 167 ------------------------ld~-------------------------------al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 167 ------------------------LDS-------------------------------AIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp ------------------------SCH-------------------------------HHHHHCCEEEECCCCCHHHHHH
T ss_pred ------------------------CCH-------------------------------HHHcccCeEEEeCCCCHHHHHH
Confidence 333 8889999999999999999999
Q ss_pred hhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhcc
Q 000950 796 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 844 (1211)
Q Consensus 796 Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~ 844 (1211)
|++.|.......+++.+++.|+..+.||+++||+.+|+.|...++.+..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999865444456888999999999999999999999999999998753
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=3.1e-14 Score=161.64 Aligned_cols=202 Identities=19% Similarity=0.183 Sum_probs=138.4
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 978 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~s 978 (1211)
+++++|.+..++.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 36799999999999887653111 1234689999999999999999999988 8899999987
Q ss_pred cccccc----------------ccc-hHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc
Q 000950 979 SITSKW----------------FGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1040 (1211)
Q Consensus 979 eL~s~~----------------~G~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld 1040 (1211)
...+.. .|. .......++..+... .|.||||||+|.+...+ ..+ .++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~----~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQ----DLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THH----HHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCC----hHHHhHhhchh
Confidence 633210 111 223344555554433 37799999999985322 022 23333443333
Q ss_pred CCcccCCccEEEEEecCCC---CCCcHHHHhccCc-ccccCCCCHHHHHHHHHHHHhh--c-ccCCcccHHHHHHHcC--
Q 000950 1041 GLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD-- 1111 (1211)
Q Consensus 1041 gl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~lL~k--~-~l~~dvdL~~LA~~T~-- 1111 (1211)
.... ..++.+|++||.+ ..+++.+.+||.. .+.+++|+.+++.+|++..+.. . ...++..++.++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 2210 3568899999877 7889999999975 8999999999999999998875 1 1224455778888887
Q ss_pred -CCcHHHHHHHHHHHHhhh
Q 000950 1112 -GYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1112 -GySgaDL~~L~~~Aa~~A 1129 (1211)
|. ++.+.++|..|+..+
T Consensus 239 ~G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 239 HGD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp SCC-HHHHHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHH
Confidence 64 567778888776543
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.61 E-value=1.1e-14 Score=171.91 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=134.8
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 000950 905 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 976 (1211)
Q Consensus 905 ~~sfddI~-Gl--e~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~ 976 (1211)
..+|++++ |. ......+...... .+ . +++++|+||||+|||+||++|++++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45899966 53 3334444443331 11 1 3679999999999999999999988 88999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 977 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 977 ~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
+..+...+.+.........|....+..+.||||||++.+.+.+ ..++.+..+++.+. .....+||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8876554333222111223444444468999999999984321 22333333443332 11345666666
Q ss_pred CCCCC---CcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1057 NRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1057 N~p~~---Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+.+.. +++.+++||. ..+.++.|+.++|.+|++..+...++. ++..+..|+..+.| +.+++.++++.+...+
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 66654 8899999985 789999999999999999998765443 44457889988875 7788988888877544
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=7.8e-15 Score=163.00 Aligned_cols=215 Identities=15% Similarity=0.225 Sum_probs=141.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~--- 983 (1211)
+++|++.+++.+...+...... -....+|...+||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT-----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 5789999999998877642110 00112344579999999999999999999998 567999999875432
Q ss_pred --cccchHH----H-HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 984 --WFGEGEK----Y-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 984 --~~G~~e~----~-I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
++|.... . ...+.........+||||||+|.+ ++..+..+..+++.............-.++++|+||
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 1211000 0 012223333445589999999988 222233333333322111000000111367899999
Q ss_pred CC--------------------------CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc---------c-CCc
Q 000950 1057 NR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---------L-ASD 1100 (1211)
Q Consensus 1057 N~--------------------------p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~---------l-~~d 1100 (1211)
|. ...+++++++||+..+.+.+|+.+++..|++.++.+.. + .++
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 247 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTE 247 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECH
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCH
Confidence 98 45788999999999999999999999999999886521 1 134
Q ss_pred ccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhHHHH
Q 000950 1101 VDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1134 (1211)
Q Consensus 1101 vdL~~LA~~T~--GySgaDL~~L~~~Aa~~Airrll 1134 (1211)
..++.|+...- .++.++|+++++.++..++.+.+
T Consensus 248 ~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 248 AAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 45677777665 67889999999999987776654
No 57
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.60 E-value=7.2e-15 Score=174.04 Aligned_cols=182 Identities=23% Similarity=0.371 Sum_probs=131.5
Q ss_pred CCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 906 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk---~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+|++++|++.++ ..|...+.. .. ..++||+||||||||++|++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5789999999998 677776652 21 2589999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEec--
Q 000950 983 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1056 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT-- 1056 (1211)
....++.+|..+.. ..+.||||||||.+.. . ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----~-------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----S-------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----H-------HHHHHHHHHhc------CceEEEecCCC
Confidence 23346666666553 3578999999998831 1 12233333332 335666655
Q ss_pred CCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc-------cc-CCcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000950 1057 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1057 N~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~-------~l-~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
|....+++++++|+. ++.+..|+.+++..+++.++... .+ .++..++.|+..+.| +.+++.++++.++..
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 555689999999994 78899999999999999998762 11 244457888888766 456777777777643
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=3.6e-14 Score=150.25 Aligned_cols=205 Identities=17% Similarity=0.126 Sum_probs=138.3
Q ss_pred CCCcccccC---cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 905 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 905 ~~sfddI~G---le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
..+|+++++ ...+.+.+...+.. ....++||+||||||||++|+++++++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888775 34666666665541 134689999999999999999999887 4789999988
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccE-EEEEecC
Q 000950 979 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATN 1057 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~V-lVIaTTN 1057 (1211)
++....... +.. -..+.+|||||++.+.... ..+..+..+++.+.. ...+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~~---------~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVAE---------QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHHH---------HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccCCH---HHHHHHHHHHHHHHH---------cCCCeEEEEcCC
Confidence 765543211 111 1346899999999883211 113333333333221 1233 4444444
Q ss_pred CCC---CCcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhH
Q 000950 1058 RPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1058 ~p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Air 1131 (1211)
.+. .+++.+.+||. ..+.++.|+.+++.++++.++....+. ++..++.|+..+.| +.+++.++++.+...+..
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 443 45688999985 789999999999999999998865543 44557788888866 678888888887765422
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHH
Q 000950 1132 EILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHE 1173 (1211)
Q Consensus 1132 rlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Ale 1173 (1211)
+ .+.|+.+|++++++
T Consensus 227 ~---------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 H---------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp H---------------------------TCCCCHHHHHHHHT
T ss_pred h---------------------------CCCCcHHHHHHHhh
Confidence 1 14589999988874
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=2.8e-14 Score=160.57 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=134.5
Q ss_pred CCCccccc-C--cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 905 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 905 ~~sfddI~-G--le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
..+|++++ | .......+...+..+ ...+.+++|+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 46788875 4 444455555554421 1134679999999999999999999998 8999999998
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 979 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
++...+.+.........|..... .+.||||||++.+.+.+ ..++.+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 87655443332222223333332 47899999999984211 12333333333332 1134677777777
Q ss_pred CC---CCcHHHHhccC--cccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhh
Q 000950 1059 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1128 (1211)
Q Consensus 1059 p~---~Ld~aLlrRF~--~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~ 1128 (1211)
+. .+++.+++||. ..+.+++ +.++|.+|++.++...++. ++..++.|+..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 66 68899999995 5788988 9999999999998865543 455588899998 4 677888888877655
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=3.6e-14 Score=148.64 Aligned_cols=184 Identities=24% Similarity=0.275 Sum_probs=131.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 971 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~-------------- 971 (1211)
..|++++|.+..++.|.+.+.. ...+..++|+||+|+|||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1233579999999999999999999887432
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 972 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 972 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
++.++... ......++.++..+. ...+.+|||||+|.+- .. ..+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~----~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RH----SFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HH----HHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HH----HHHHHHH
Confidence 22232211 112234555555443 2347899999999872 11 2223333
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000950 1038 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1116 (1211)
Q Consensus 1038 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySga 1116 (1211)
.++.. ..++.+|++|+.+..+++.+.+|+ ..+.++.++.++..++++.++...... ++..+..|+..+.| +++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 33321 256888899998889999999997 689999999999999999998765433 44557889999977 678
Q ss_pred HHHHHHHHHH
Q 000950 1117 DLKNLCVTAA 1126 (1211)
Q Consensus 1117 DL~~L~~~Aa 1126 (1211)
.+.++++.|+
T Consensus 223 ~~~~~~~~~~ 232 (250)
T 1njg_A 223 DALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887775
No 61
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=2.1e-14 Score=169.36 Aligned_cols=180 Identities=24% Similarity=0.371 Sum_probs=131.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc-
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 987 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s-~~~G~- 987 (1211)
+|+|++++++.|...+..++.++.++.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999999877777666554433345688999999999999999999999999999999998887 58884
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 000950 988 GEKYVKAVFSLAS------------------------------------------------------------------- 1000 (1211)
Q Consensus 988 ~e~~I~~lF~~A~------------------------------------------------------------------- 1000 (1211)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 6777766665441
Q ss_pred -----------------------------------------------------------------------hc-CCcEEE
Q 000950 1001 -----------------------------------------------------------------------KI-APSVVF 1008 (1211)
Q Consensus 1001 -----------------------------------------------------------------------k~-~PsILf 1008 (1211)
+. ..+|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 01 235899
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc------CCccEEEEEec----CCCCCCcHHHHhccCcccccCC
Q 000950 1009 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 1078 (1211)
Q Consensus 1009 IDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRF~~~I~v~l 1078 (1211)
+||||.+.....+....-...-+.+.|+..+++.... +..++++|+|. +.+.++.|.++.||+.++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999754322111111122445566666553211 23678999987 3455566899999999999999
Q ss_pred CCHHHHHHHHH
Q 000950 1079 PDAPNREKIIR 1089 (1211)
Q Consensus 1079 Pd~eeR~eILk 1089 (1211)
++.++..+|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999983
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.59 E-value=1.7e-15 Score=153.74 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=114.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4688999999998888886642 224679999999999999999999986 7889999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
++..+. ..+.+.....+..++..+.+ ..+.||||||+|.+...+....... ...++..++ . ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 987765 33445556677788876644 4477999999999964332111111 111222222 1 145778
Q ss_pred EEecCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHH
Q 000950 1053 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKII 1088 (1211)
Q Consensus 1053 IaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 1088 (1211)
|++||.+. .+++++++||. .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 6999999999998875
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1.2e-14 Score=182.15 Aligned_cols=225 Identities=18% Similarity=0.274 Sum_probs=158.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4688999999999888886642 234689999999999999999999987 6678888
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
++..+. ..+.|..+..++.+|..+....++||||||+|.|++.............++..+ + ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~---l------~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL---L------SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC---S------SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH---H------hCCCeEEE
Confidence 887766 457788899999999999888889999999999987654322222222222222 2 12567888
Q ss_pred EecCCC-----CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc----cc-CCcccHHHHHHHcCC-----CcHHHH
Q 000950 1054 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADG-----YSGSDL 1118 (1211)
Q Consensus 1054 aTTN~p-----~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~----~l-~~dvdL~~LA~~T~G-----ySgaDL 1118 (1211)
++|+.+ ..+++++.+||. .+.|+.|+.++|.+||+.++... .+ ..+..+..++..+.+ +.+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 888764 357889999996 79999999999999999887652 22 134446666666554 345567
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1119 KNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1119 ~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
..++.+|+.....+ + .......++.+|+..++.++.
T Consensus 399 i~lld~a~~~~~~~-------------------~---~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARARLM-------------------P---VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHS-------------------S---SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc-------------------c---ccccCCccCHHHHHHHHHHhc
Confidence 77777665322110 0 011234678888888887754
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.58 E-value=2.1e-14 Score=161.92 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=102.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 971 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------~------ 971 (1211)
..+|++++|.+.+++.+...+.. ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46899999999987765443321 01236999999999999999999999862 2
Q ss_pred --------------------EEEEeccccccccccchHHHHHHHHHHH---------HhcCCcEEEEccchhhhcCCCCC
Q 000950 972 --------------------FINISMSSITSKWFGEGEKYVKAVFSLA---------SKIAPSVVFVDEVDSMLGRRENP 1022 (1211)
Q Consensus 972 --------------------fi~I~~seL~s~~~G~~e~~I~~lF~~A---------~k~~PsILfIDEID~L~~~r~s~ 1022 (1211)
++.+.........+|.. .+...|..+ ....++||||||||.+ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-----~~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL-----ED 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----CH
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC-----CH
Confidence 22111111011112210 011122221 1113689999999988 22
Q ss_pred chHHHHHHHHHhhh--hhccCCcccCCccEEEEEecCCCC-CCcHHHHhccCcccccCCC-CHHHHHHHHHHHH
Q 000950 1023 GEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 1092 (1211)
Q Consensus 1023 ~~~e~l~~il~~LL--~~ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRF~~~I~v~lP-d~eeR~eILk~lL 1092 (1211)
..+..+..+++.-. ....+.......++++|+|||... .+++++++||+..+.++.| +.++|.+|++..+
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 23334444444311 111121111224799999999754 8999999999888999999 6777878887753
No 65
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=1e-14 Score=164.43 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=112.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------IT 981 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se------L~ 981 (1211)
+++++|.+.+++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. +.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 45788999999888776641 147999999999999999999999999999998742 21
Q ss_pred cccccchHHHHHHHHHHHHhcC---CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 982 SKWFGEGEKYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 982 s~~~G~~e~~I~~lF~~A~k~~---PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
+...-... ...| ..... .+||||||++.+ ++..+..+..++++....+.+.....+.+++||+|+|+
T Consensus 90 g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 90 GTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EEEEEETT---TTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred CceeecCC---CCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11110000 0000 00111 279999999987 33344455555555444444433333457888999885
Q ss_pred CC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh
Q 000950 1059 PF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1059 p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
.+ .+++++++||...+.++.|+.++|.+|++..+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 53 3899999999888999999999999999998765
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=7.2e-14 Score=159.37 Aligned_cols=194 Identities=19% Similarity=0.219 Sum_probs=135.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 977 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----------g~~fi~I~~ 977 (1211)
++++|.++.++.+.+.+...+. ...+.+++|+||||||||++|+++++++ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5789999999999887753221 1234689999999999999999999987 899999998
Q ss_pred cccc-cc----------c-------ccc-hHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 978 SSIT-SK----------W-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 978 seL~-s~----------~-------~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
.... .. . .+. ....+..++..+....+ ||||||+|.+..... ++. ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6543 10 0 111 12334555555544444 999999999853221 111 12233222
Q ss_pred ccCCcccCCccEEEEEecCCC---CCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh--c-ccCCcccHHHHHHHcC-
Q 000950 1039 WDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD- 1111 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k--~-~l~~dvdL~~LA~~T~- 1111 (1211)
. .++.+|++||.+ ..+++.+.+||...+.+++|+.++..+|++..+.. . ...++..++.++..+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 468889999876 67899999999889999999999999999998874 1 1224445778888876
Q ss_pred --CCcHHHHHHHHHHHHhhh
Q 000950 1112 --GYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1112 --GySgaDL~~L~~~Aa~~A 1129 (1211)
| ..+.+.++|+.|+..+
T Consensus 234 ~~G-~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQLA 252 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHHT
T ss_pred ccC-CHHHHHHHHHHHHHHh
Confidence 4 3456667777776443
No 67
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.56 E-value=4.3e-15 Score=175.58 Aligned_cols=229 Identities=18% Similarity=0.274 Sum_probs=159.2
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000950 395 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 474 (1211)
Q Consensus 395 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 474 (1211)
+.+.+.+.|+ .+...++|+++..+ +..|..|.++.-.+++++++ |.. .....+.|||.||+| ....+||||+
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTT--TSG-GGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHH--hhc-cCCCCceEEEECCCC--CCHHHHHHHH
Confidence 4444444444 45668999998776 89999999998888888876 332 233457899999999 7899999999
Q ss_pred Hhhc-CCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 000950 475 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 553 (1211)
Q Consensus 475 A~~f-~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1211)
|+++ +++++.++.+.+.+.+
T Consensus 188 a~~~~~~~~~~v~~~~l~~~~----------------------------------------------------------- 208 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVSKW----------------------------------------------------------- 208 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHhhh-----------------------------------------------------------
Confidence 9998 7777666543322110
Q ss_pred cCCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccc
Q 000950 554 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 633 (1211)
Q Consensus 554 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~ 633 (1211)
+|..
T Consensus 209 --------------~g~~-------------------------------------------------------------- 212 (444)
T 2zan_A 209 --------------LGES-------------------------------------------------------------- 212 (444)
T ss_dssp -----------------C--------------------------------------------------------------
T ss_pred --------------cchH--------------------------------------------------------------
Confidence 0100
Q ss_pred cccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc----Chh----hHHHHHHHHhcC---CCCEEEEe
Q 000950 634 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NND----AYGALKSKLENL---PSNVVVIG 702 (1211)
Q Consensus 634 ~~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~----~~~----~~~~i~s~L~~L---~g~VvVIg 702 (1211)
...+..+|+.+.. .+|.||||||+|.+... ..+ +.+.+...|+.+ .++|+|||
T Consensus 213 -------------~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 213 -------------EKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp -------------CCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred -------------HHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 0034556666654 68999999999996442 122 223333333332 45899999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHH
Q 000950 703 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 782 (1211)
Q Consensus 703 s~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq 782 (1211)
++|+++ .+++ +++|||++.
T Consensus 277 atn~~~------------------------------~ld~-------------------------------al~rRf~~~ 295 (444)
T 2zan_A 277 ATNIPW------------------------------VLDS-------------------------------AIRRRFEKR 295 (444)
T ss_dssp EESCGG------------------------------GSCH-------------------------------HHHTTCCEE
T ss_pred cCCCcc------------------------------ccCH-------------------------------HHHhhcceE
Confidence 999433 2332 888888888
Q ss_pred hhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 000950 783 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 843 (1211)
Q Consensus 783 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~ 843 (1211)
+++++|+...|..|+++|.......+++.+++.|+..+.||+|+||+.+|+.|...++++.
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999886533334578899999999999999999999999999998764
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=1e-14 Score=173.44 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=130.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..|++++|.+..++.+.+.+.. ...+++||+||||||||++|+++|..+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4688999999999998887752 123589999999999999999999997 7889999
Q ss_pred eccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 000950 976 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 976 ~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
++. +.+.|..+..++.+|..+....++||||| . . .. ..+.|+..+. ...+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----~---~~----a~~~L~~~L~------~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----A---ID----ASNILKPSLA------RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C--------------------CCCTT------SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----c---hh----HHHHHHHhhc------CCCEEEEec
Confidence 987 56677777889999999998889999999 0 1 11 1122222221 256899999
Q ss_pred cCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhc----ccC-CcccHHHHHHHcCCCc-----HHHHHH
Q 000950 1056 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----ELA-SDVDLEGIANMADGYS-----GSDLKN 1120 (1211)
Q Consensus 1056 TN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~----~l~-~dvdL~~LA~~T~GyS-----gaDL~~ 1120 (1211)
||... .+++++++||. .+.|+.|+.+++.+|++.++... .+. .+..+..++..+.+|. +.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99876 68999999996 69999999999999999887662 222 4445677777766554 346667
Q ss_pred HHHHHHh
Q 000950 1121 LCVTAAH 1127 (1211)
Q Consensus 1121 L~~~Aa~ 1127 (1211)
++..|+.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 69
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=5.6e-14 Score=157.84 Aligned_cols=184 Identities=17% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|++++|.+.+++.|.+.+.. ...++.+|++||||||||++|+++|++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 5799999999999999988762 22445688899999999999999999999999999987632
Q ss_pred cchHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC
Q 000950 986 GEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1060 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~ 1060 (1211)
...++..+..+... .+.||||||+|.+.+ ...+..+.++++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~~~L~~~le~~-----------~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQRHLRSFMEAY-----------SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHHHHHHHHHHHH-----------GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHHHHHHHHHHhC-----------CCCcEEEEEeCCcc
Confidence 23444444443332 468999999999831 11222333332221 14578889999999
Q ss_pred CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhh-------cccC-Cc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1061 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EELA-SD-VDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1061 ~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k-------~~l~-~d-vdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
.+++++++|| .++.|+.|+.++|.+|++.++.. .++. ++ ..++.|+..+.|.... +.+.++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh
Confidence 9999999999 57999999999987776655432 2332 34 5578888888776554 444445443
No 70
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=4.2e-14 Score=162.69 Aligned_cols=223 Identities=19% Similarity=0.265 Sum_probs=133.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~----------------k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
.|+|++.+++.|...+..++.+..... ..+...+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999988754333322110 0112345568999999999999999999999999999
Q ss_pred EEeccccc-cccccch-HHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCch--HHHHHHHHHhhhhhccCCc--
Q 000950 974 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLR-- 1043 (1211)
Q Consensus 974 ~I~~seL~-s~~~G~~-e~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~s~~~--~e~l~~il~~LL~~ldgl~-- 1043 (1211)
.++|..+. ..++|.. +..+..+|..+. ...++||||||||.+...+..... ......+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 445566665432 346799999999999654322110 0000013333444443220
Q ss_pred --c-------------cCCccEEEEEecCC-----------------------------------------CCCCcHHHH
Q 000950 1044 --T-------------KDKERVLVLAATNR-----------------------------------------PFDLDEAVV 1067 (1211)
Q Consensus 1044 --~-------------k~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 1067 (1211)
. -...++++|+++|. ...+.+.++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 01144677777662 113668889
Q ss_pred hccCcccccCCCCHHHHHHHHHH----HHhh-------c--cc-CCcccHHHHHHHcC--CCcHHHHHHHHHHHHhhhhH
Q 000950 1068 RRLPRRLMVNLPDAPNREKIIRV----ILAK-------E--EL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIR 1131 (1211)
Q Consensus 1068 rRF~~~I~v~lPd~eeR~eILk~----lL~k-------~--~l-~~dvdL~~LA~~T~--GySgaDL~~L~~~Aa~~Air 1131 (1211)
+||+.++.|+.++.++...|+.. ++.. . .+ .++..+..|+.... ....+.|.++++.++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99988999999999999988862 2221 0 11 13334566666543 34567777777777665544
Q ss_pred H
Q 000950 1132 E 1132 (1211)
Q Consensus 1132 r 1132 (1211)
+
T Consensus 342 ~ 342 (376)
T 1um8_A 342 D 342 (376)
T ss_dssp T
T ss_pred h
Confidence 4
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=158.20 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=73.9
Q ss_pred hHHH--HHHHHhhhcchhhhccchhhHHHHHhh-hCCC-CcccchhhhcccC--CCCHHHHHHHHhhhhhhHhhhccCCC
Q 000950 774 ALLS--DWKQQLERDVETLKGQSNIISIRSVLS-RNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCSEAP 847 (1211)
Q Consensus 774 ALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~-~~~l-~d~dL~~LA~~tk--g~sgadI~~Lv~~A~s~Al~r~~~~i 847 (1211)
|++| ||++++++++|+...|.+|+++|+... ...+ .+++++.||..+. ||+|+||+.+|+.|+..|+++.....
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8998 999999999999999999999997532 2233 6889999999765 99999999999999999998754321
Q ss_pred CCCCccccccCchhhhHHHHHhhhhhhhh
Q 000950 848 GKDAKLKISTESIMYGLNILQGIQSESKS 876 (1211)
Q Consensus 848 ~~~~kl~id~~sI~~~~~df~~a~~eik~ 876 (1211)
.. ......+.+...+|+.++..+++
T Consensus 242 ~~----~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 242 KS----GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCC
T ss_pred cc----cccccCCeecHHHHHHHHHHhcC
Confidence 11 11123345677888888776655
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.51 E-value=2.4e-14 Score=145.39 Aligned_cols=150 Identities=21% Similarity=0.406 Sum_probs=107.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
.+|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 4678899999988888876641 123579999999999999999999987 7888999
Q ss_pred ecccccc--ccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCC-CCchHHHHHHHHHhhhhhccCCcccCCccEE
Q 000950 976 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1051 (1211)
Q Consensus 976 ~~seL~s--~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~-s~~~~e~l~~il~~LL~~ldgl~~k~~~~Vl 1051 (1211)
++..+.. .+.+.....+..++..+... .+.||||||+|.+.+.+. ........ ..+..++ + ...++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~-~~l~~~~---~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAG-NILKPML---A------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTH-HHHHHHH---H------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHH-HHHHHHH---h------cCCee
Confidence 8877642 24455566777888777665 578999999999964433 11111111 1222222 1 14578
Q ss_pred EEEecCCCC-----CCcHHHHhccCcccccCCCC
Q 000950 1052 VLAATNRPF-----DLDEAVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1052 VIaTTN~p~-----~Ld~aLlrRF~~~I~v~lPd 1080 (1211)
+|++||.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888888764 68999999997 58888885
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=4.1e-13 Score=152.06 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=135.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccc
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 980 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el------g~~fi~I~~seL 980 (1211)
.+++++|.+..++.|.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.++|...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 446899999999999886653111 1234679999999999999999999988 889999997642
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC
Q 000950 981 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1042 (1211)
Q Consensus 981 ~s------~----------~~G~-~e~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl 1042 (1211)
.. . ..+. .......++..+.... |.||+|||++.+...... .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc
Confidence 21 0 0111 2333455555555444 899999999998643211 1233333333322
Q ss_pred cccCCccEEEEEecCCC---CCCcHHHHhccC-cccccCCCCHHHHHHHHHHHHhhcc---cCCcccHHHHHHHcC---C
Q 000950 1043 RTKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKEE---LASDVDLEGIANMAD---G 1112 (1211)
Q Consensus 1043 ~~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k~~---l~~dvdL~~LA~~T~---G 1112 (1211)
...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..++++..+.... ...+..+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 22568888888876 467888889886 4899999999999999999876421 223445677777776 5
Q ss_pred CcHHHHHHHHHHHHhhh
Q 000950 1113 YSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1113 ySgaDL~~L~~~Aa~~A 1129 (1211)
. ++.+.++|..|+..+
T Consensus 237 ~-~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 237 D-ARRALDLLRVSGEIA 252 (386)
T ss_dssp C-HHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHH
Confidence 4 555666777776543
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=5.5e-14 Score=178.57 Aligned_cols=199 Identities=22% Similarity=0.322 Sum_probs=132.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
.+|++++|.++.+..+.+.+.. +..+++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4788999999988888886641 233579999999999999999999987 8899999
Q ss_pred eccccc--cccccchHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEE
Q 000950 976 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1052 (1211)
Q Consensus 976 ~~seL~--s~~~G~~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlV 1052 (1211)
+++.+. ..+.|..+..++.+|..+... .|.||||||+|.|.+.....+.....+ ++..++ . ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~-~L~~~l---~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGN-MLKPAL---A------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH---H------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHH-HHHHHH---h------CCCeEE
Confidence 998876 457788888999999999875 689999999999975543322222221 222222 1 245778
Q ss_pred EEecCCCC----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcc----c-CCcccHHHHHHHcC-----CCcHHHH
Q 000950 1053 LAATNRPF----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMAD-----GYSGSDL 1118 (1211)
Q Consensus 1053 IaTTN~p~----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~----l-~~dvdL~~LA~~T~-----GySgaDL 1118 (1211)
|++|+.+. .+++++.+||. .+.|+.|+.+++.+|++.++.... + ..+..+..++..+. .|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888663 57899999997 499999999999999998876531 1 13444566666553 4567777
Q ss_pred HHHHHHHHhhh
Q 000950 1119 KNLCVTAAHCP 1129 (1211)
Q Consensus 1119 ~~L~~~Aa~~A 1129 (1211)
..++.+|+...
T Consensus 382 i~lldea~a~~ 392 (854)
T 1qvr_A 382 IDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=1.3e-12 Score=148.94 Aligned_cols=201 Identities=14% Similarity=0.059 Sum_probs=135.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc
Q 000950 908 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 981 (1211)
Q Consensus 908 fddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~--gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~ 981 (1211)
+++++|.+...+.|...+...+. + .++. .++|+||+|+|||+++++++..+ +..++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36799999999999887763211 1 1223 79999999999999999999998 6789999986533
Q ss_pred cc---------c-------ccc-hHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCc
Q 000950 982 SK---------W-------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1043 (1211)
Q Consensus 982 s~---------~-------~G~-~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~ 1043 (1211)
.. . .+. .......+...... ..|.||||||+|.+ + . ..+..++..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~---~----~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A---P----DILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C---H----HHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c---h----HHHHHHHHHHHhCC
Confidence 21 0 011 12223333333333 34789999999987 1 1 22233333333221
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhccCc-ccccCCCCHHHHHHHHHHHHhh---cccCCcccHHHHHHHcC-----
Q 000950 1044 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD----- 1111 (1211)
Q Consensus 1044 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~lL~k---~~l~~dvdL~~LA~~T~----- 1111 (1211)
.....++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.. ....++..+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111468888888877 6788999999875 7999999999999999998875 22335566788888883
Q ss_pred ---CCcHHHHHHHHHHHHhhhh
Q 000950 1112 ---GYSGSDLKNLCVTAAHCPI 1130 (1211)
Q Consensus 1112 ---GySgaDL~~L~~~Aa~~Ai 1130 (1211)
+-..+.+.++|..|+..+.
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 2256677888888776543
No 76
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.9e-13 Score=151.57 Aligned_cols=185 Identities=21% Similarity=0.249 Sum_probs=128.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 978 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg------~~fi~I~~s 978 (1211)
..+|++++|.+++++.|...+.. ..+ .++||+||||||||++|+++++.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35789999999999998887642 112 3599999999999999999998863 468888887
Q ss_pred ccccccccchHHHHHHHHHHHH----------------hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC
Q 000950 979 SITSKWFGEGEKYVKAVFSLAS----------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1042 (1211)
Q Consensus 979 eL~s~~~G~~e~~I~~lF~~A~----------------k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl 1042 (1211)
+..+ ...++..+.... ...+.||||||+|.+. ...+..+.+++++ .
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~~~~~~Ll~~le~-------~ 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----ADAQSALRRTMET-------Y 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----HHHHHHHHHHHHH-------T
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----HHHHHHHHHHHHh-------c
Confidence 6422 112222211111 1234699999999883 1222223222222 1
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHH
Q 000950 1043 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1121 (1211)
Q Consensus 1043 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L 1121 (1211)
.....+|.+||.+..+.+.+++|+. .+.+..|+.++...+++..+...++. ++..+..|+..+.|. .+.+.++
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~ 234 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITL 234 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 1346677788999999999999995 88999999999999999988765543 455688899998875 4455555
Q ss_pred HHHHHh
Q 000950 1122 CVTAAH 1127 (1211)
Q Consensus 1122 ~~~Aa~ 1127 (1211)
++.++.
T Consensus 235 l~~~~~ 240 (353)
T 1sxj_D 235 LQSASK 240 (353)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 555543
No 77
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.48 E-value=4.9e-14 Score=168.65 Aligned_cols=185 Identities=18% Similarity=0.281 Sum_probs=113.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccC----h----hhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCCCc
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGL 719 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~~----~----~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~~~~ 719 (1211)
+..+|+.+.. ..|.||||||+|.+..+. . ++.+.|...|+.+ ..+|+||++||+++.
T Consensus 286 ~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~---------- 352 (489)
T 3hu3_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS---------- 352 (489)
T ss_dssp HHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG----------
T ss_pred HHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc----------
Confidence 4455555544 679999999999965532 2 3444455555544 458999999995433
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchhh
Q 000950 720 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 797 (1211)
Q Consensus 720 ~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~Il 797 (1211)
+|+ +++| ||.+.+++++|+...|.+|+
T Consensus 353 ------------Ld~---------------------------------------al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 353 ------------IDP---------------------------------------ALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp ------------BCG---------------------------------------GGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred ------------cCH---------------------------------------HHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 222 5655 78888888899988999999
Q ss_pred HHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCC-Ccc-ccccCchhhhHHHHHhhhhhh
Q 000950 798 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSES 874 (1211)
Q Consensus 798 ~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~-~kl-~id~~sI~~~~~df~~a~~ei 874 (1211)
++|+. ..++ .+.+++.++..+.||++++|+.||..|...++.+..+.+... ..+ ......+.+...+|+.++.++
T Consensus 382 ~~~~~--~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 382 QIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp HHHTT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred HHHHh--cCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhC
Confidence 98854 2233 667899999999999999999999999999998766543221 111 111233456677888777666
Q ss_pred hhhhhhhhhhcchhHHHHhhhcCCCCCCCCCCCcccccCcHHH
Q 000950 875 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 917 (1211)
Q Consensus 875 k~~~~slk~iv~~~e~ek~ll~~vIp~~e~~~sfddI~Gle~v 917 (1211)
.+.. +.++. ..-+.++|+||||....
T Consensus 460 ~ps~--~re~~---------------~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 460 NPSA--LRETV---------------VEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHHH--HHGGG---------------C----------------
T ss_pred Cchh--hhccc---------------ccCCCCCHHHcCCCccc
Confidence 5421 11111 11236899999998653
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.6e-13 Score=165.14 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=130.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccC-ChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~-~pelf~k~~i~--~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s 982 (1211)
.+|++++|.+..++.|.+.+..... .+..|.+.+.. .+++++||+||||||||++|+++|++++++++.++++++.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 5799999999999999998864221 11222222211 24578999999999999999999999999999999988654
Q ss_pred ccccchH-------HHHHHHHHHH-----HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccE
Q 000950 983 KWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1050 (1211)
Q Consensus 983 ~~~G~~e-------~~I~~lF~~A-----~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~V 1050 (1211)
....... ..+..+|..+ ....+.||||||+|.|.... +... +.+...++. .+.++
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~l----~~L~~~l~~----~~~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGGV----GQLAQFCRK----TSTPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTHH----HHHHHHHHH----CSSCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHHH----HHHHHHHHh----cCCCE
Confidence 3211100 0022233333 22457899999999985422 1111 122222211 22456
Q ss_pred EEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1051 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1051 lVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
++|+++.....+.+ +. |+...+.|+.|+.+++.++++.++....+. ++..+..|+..+.|... .+.++++.+
T Consensus 183 Ili~~~~~~~~l~~-l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR-~~i~~L~~~ 255 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIR-QVINLLSTI 255 (516)
T ss_dssp EEEESCTTSSTTGG-GT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHH-HHHHHHTHH
T ss_pred EEEEcCCCCccchh-hH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH-HHHHHHHHH
Confidence 66666554445543 44 444689999999999999999888765543 44558899999877544 444444443
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=8.6e-14 Score=174.51 Aligned_cols=183 Identities=20% Similarity=0.293 Sum_probs=130.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 975 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I 975 (1211)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4688999999999999887752 223579999999999999999999997 7888888
Q ss_pred eccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 000950 976 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 976 ~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
++ ...+.|..+..++.+|..+....++||||| . . . ...+.++..+. ...+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~---~----~~~~~L~~~l~------~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A---I----DASNILKPSLA------RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT------SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c---h----hHHHHHHHHHh------cCCEEEEeC
Confidence 87 445678888899999999999899999999 0 1 0 11122222222 356899999
Q ss_pred cCCCC-----CCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhccc----C-CcccHHHHHHHcC-----CCcHHHHHH
Q 000950 1056 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL----A-SDVDLEGIANMAD-----GYSGSDLKN 1120 (1211)
Q Consensus 1056 TN~p~-----~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l----~-~dvdL~~LA~~T~-----GySgaDL~~ 1120 (1211)
||... .++++++||| ..|.|+.|+.+++.+||+.++..... . .+..+..++..+. ++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 57999999999999999988766321 1 3344566665543 456667777
Q ss_pred HHHHHHhh
Q 000950 1121 LCVTAAHC 1128 (1211)
Q Consensus 1121 L~~~Aa~~ 1128 (1211)
++..|+..
T Consensus 377 ll~~a~~~ 384 (758)
T 3pxi_A 377 LIDEAGSK 384 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776643
No 80
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.2e-13 Score=150.92 Aligned_cols=160 Identities=10% Similarity=0.116 Sum_probs=112.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 980 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----------g~~fi~I~~seL 980 (1211)
|.+.++..+.|...+...+. ...+.+++|+||||||||++++++++++ .+.++.+||..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 44556666666665543221 2245789999999999999999999998 467899999764
Q ss_pred ccc----------c------ccchHHHHHHHHHHH--HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC
Q 000950 981 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1042 (1211)
Q Consensus 981 ~s~----------~------~G~~e~~I~~lF~~A--~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl 1042 (1211)
.+. . .+.....+..+|..+ ....+.||||||+|.|. .+..+.. ++. |..
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L~~----l~~-~~~- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKILQY----FEK-WIS- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHHHH----HHH-HHH-
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHHHH----HHh-ccc-
Confidence 432 1 133456778888865 34567899999999995 2333333 322 111
Q ss_pred cccCCccEEEEEecCCCCCC----cHHHHhccC-cccccCCCCHHHHHHHHHHHHhhc
Q 000950 1043 RTKDKERVLVLAATNRPFDL----DEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE 1095 (1211)
Q Consensus 1043 ~~k~~~~VlVIaTTN~p~~L----d~aLlrRF~-~~I~v~lPd~eeR~eILk~lL~k~ 1095 (1211)
....+++||+++|..+.. ++.+++||. .+|.|++++.++..+|++..+...
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 133679999999887643 345567886 689999999999999999998763
No 81
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=2e-13 Score=149.21 Aligned_cols=201 Identities=19% Similarity=0.168 Sum_probs=114.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~seL~s 982 (1211)
.+|++++|.+..+..+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 478899999998888877665311 1225799999999999999999999874 7899999987633
Q ss_pred c-----cccchHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccE
Q 000950 983 K-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1050 (1211)
Q Consensus 983 ~-----~~G~~e~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~V 1050 (1211)
. .+|..... ....|..+ ..++||||||+.+ +...+..+.++++.......+.......++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 2 12211100 01123322 3589999999998 223334444444432111111111112467
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcccccCCCCHHHHH----HHHHHHHhh----ccc-----CCcccHHHHHHHc
Q 000950 1051 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK----EEL-----ASDVDLEGIANMA 1110 (1211)
Q Consensus 1051 lVIaTTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~lL~k----~~l-----~~dvdL~~LA~~T 1110 (1211)
.+|+|||.. ..+.+.+.+||. .+.+.+|+..+|. .+++.++.. ... .++..+..|....
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 899999874 257789999995 3566777766553 455555443 221 1222233444433
Q ss_pred CCCcHHHHHHHHHHHHh
Q 000950 1111 DGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1111 ~GySgaDL~~L~~~Aa~ 1127 (1211)
-..+.++|.++++.++.
T Consensus 222 ~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 222 WPGNIRELKNVVERSVY 238 (265)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 23356778887777664
No 82
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.47 E-value=5.3e-13 Score=147.85 Aligned_cols=257 Identities=16% Similarity=0.188 Sum_probs=172.7
Q ss_pred HHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHh
Q 000950 397 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAK 476 (1211)
Q Consensus 397 ~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~ 476 (1211)
+.+.+.+++ +.-.++|+++-.+ +..+..|..+...++++++. |. .+....+.|||.||+| ....+||||+|+
T Consensus 5 ~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~--~~-~~~~~~~~vll~Gp~G--tGKT~la~~la~ 76 (297)
T 3b9p_A 5 QLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPEL--FT-GLRAPAKGLLLFGPPG--NGKTLLARAVAT 76 (297)
T ss_dssp HHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGG--SC-GGGCCCSEEEEESSSS--SCHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHH--Hh-cCCCCCCeEEEECcCC--CCHHHHHHHHHH
Confidence 344555554 3467899998776 89999999988878877765 22 3445578999999999 689999999999
Q ss_pred hcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCC
Q 000950 477 HFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKN 556 (1211)
Q Consensus 477 ~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1211)
.++.+++-++...+.+.+.
T Consensus 77 ~~~~~~~~i~~~~l~~~~~------------------------------------------------------------- 95 (297)
T 3b9p_A 77 ECSATFLNISAASLTSKYV------------------------------------------------------------- 95 (297)
T ss_dssp HTTCEEEEEESTTTSSSSC-------------------------------------------------------------
T ss_pred HhCCCeEEeeHHHHhhccc-------------------------------------------------------------
Confidence 9887776655422211000
Q ss_pred ccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccccc
Q 000950 557 YTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLR 636 (1211)
Q Consensus 557 ~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~ 636 (1211)
|
T Consensus 96 ------------~------------------------------------------------------------------- 96 (297)
T 3b9p_A 96 ------------G------------------------------------------------------------------- 96 (297)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcCC-----CCEEEEee
Q 000950 637 LDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGS 703 (1211)
Q Consensus 637 ~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L~-----g~VvVIgs 703 (1211)
...-.+..+|+.+.. .+|.||||||++.++.. ..+..+.+...++.++ ++|+||++
T Consensus 97 --------~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 97 --------DGEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp --------CHHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred --------hHHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 001144556666554 68999999999996552 2344445566666664 46999999
Q ss_pred ccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHh
Q 000950 704 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 783 (1211)
Q Consensus 704 ~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~ 783 (1211)
+|+++. +++ +++|||...+
T Consensus 166 tn~~~~------------------------------l~~-------------------------------~l~~R~~~~i 184 (297)
T 3b9p_A 166 TNRPQE------------------------------LDE-------------------------------AALRRFTKRV 184 (297)
T ss_dssp ESCGGG------------------------------BCH-------------------------------HHHHHCCEEE
T ss_pred cCChhh------------------------------CCH-------------------------------HHHhhCCeEE
Confidence 994332 222 6777777777
Q ss_pred hhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhh
Q 000950 784 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYG 863 (1211)
Q Consensus 784 e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~ 863 (1211)
++++|+...|..|++.+.......+++.+++.|+..+.||++++|+.+|+.|...++++........ ........+.
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~---~~~~~~~~i~ 261 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC---LDISAMRAIT 261 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----------CCCCCCCC
T ss_pred EeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc---ccccccCCcC
Confidence 7888888788888777654333456778899999999999999999999999999987654221110 0111122355
Q ss_pred HHHHHhhhhhhhh
Q 000950 864 LNILQGIQSESKS 876 (1211)
Q Consensus 864 ~~df~~a~~eik~ 876 (1211)
..+|..+...+++
T Consensus 262 ~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 262 EQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCC
Confidence 6677666555443
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=3e-12 Score=145.54 Aligned_cols=201 Identities=22% Similarity=0.248 Sum_probs=133.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 985 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~ 985 (1211)
.+|++++|.+.+++.+...+..... + ..++.+++|+||||+|||+|+++||..++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888776642110 0 124467999999999999999999999999887776654321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc---cCCcc----cCCccEEEEEecCC
Q 000950 986 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW---DGLRT----KDKERVLVLAATNR 1058 (1211)
Q Consensus 986 G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l---dgl~~----k~~~~VlVIaTTN~ 1058 (1211)
...+..++.. .....|+||||++.+.. ...+.+...+......+ .+... ..-..+.++++|+.
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 1123333322 12458999999998842 12222221111110000 00000 00124677889999
Q ss_pred CCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHhhh
Q 000950 1059 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1059 p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~A 1129 (1211)
+..|++.+++||...+.+++|+.+++.++++.......+. ++..+..||..+.|. ++.+.++++.+...+
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999988765443 445578889888875 467777777765444
No 84
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.45 E-value=3.5e-14 Score=159.10 Aligned_cols=217 Identities=18% Similarity=0.247 Sum_probs=154.5
Q ss_pred ccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 408 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 408 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
.-.++|+++--+ +..|..|.++.-..+++++. |.+---...+.|||.||+| ....+||||||+..+++++.++.
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~--~~~~~~~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDK--FLKFGMTPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHH--HHHcCCCCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEEh
Confidence 456899997776 88999999988878888765 3221123456799999999 68999999999999988877653
Q ss_pred CCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeee
Q 000950 488 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 567 (1211)
Q Consensus 488 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 567 (1211)
..+.+ +|
T Consensus 83 ~~l~~-------------------------------------------------------------------------~~ 89 (301)
T 3cf0_A 83 PELLT-------------------------------------------------------------------------MW 89 (301)
T ss_dssp HHHHH-------------------------------------------------------------------------HH
T ss_pred HHHHh-------------------------------------------------------------------------hh
Confidence 21100 00
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHH
Q 000950 568 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 647 (1211)
Q Consensus 568 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k 647 (1211)
+|.. .
T Consensus 90 ~g~~---------------------------------------------------------------------------~ 94 (301)
T 3cf0_A 90 FGES---------------------------------------------------------------------------E 94 (301)
T ss_dssp HTTC---------------------------------------------------------------------------T
T ss_pred cCch---------------------------------------------------------------------------H
Confidence 0100 0
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----------ChhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccC
Q 000950 648 LAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKS 714 (1211)
Q Consensus 648 ~~~~~l~evl~sesk~~P~Ilf~~die~~l~~-----------~~~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~ 714 (1211)
..+..+|+.+.. ..|.||||||+|.+... ..+..+.+...|+.+ ..+|+|||+||+++.
T Consensus 95 ~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~----- 166 (301)
T 3cf0_A 95 ANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI----- 166 (301)
T ss_dssp THHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG-----
T ss_pred HHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc-----
Confidence 023455555544 67999999999996531 133455666677765 348999999995433
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhc
Q 000950 715 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 792 (1211)
Q Consensus 715 ~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~g 792 (1211)
+++ +++| ||++.+++++|+...
T Consensus 167 -------------------------ld~-------------------------------al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 167 -------------------------IDP-------------------------------AILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp -------------------------SCG-------------------------------GGGSTTSSCEEEECCCCCHHH
T ss_pred -------------------------cCh-------------------------------HHhcCCccceEEecCCcCHHH
Confidence 222 6666 777778888888888
Q ss_pred cchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhcc
Q 000950 793 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 844 (1211)
Q Consensus 793 R~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~ 844 (1211)
|.+|++.+.. ..++ .+++++.|+..+.||+|+||+.+|..|...++.+..
T Consensus 191 r~~il~~~l~--~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 191 RVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp HHHHHHHHHT--TSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888877643 2333 577899999999999999999999999999987653
No 85
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.44 E-value=1e-12 Score=145.69 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~se 979 (1211)
..+|++++|.+.+++.|...+.. ... .++||+||+|+|||++|+++++.+ +.+++.+++++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 35799999999999988876541 112 249999999999999999999986 45688899876
Q ss_pred cccccccchHHHHHHHHHHH-H-hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 000950 980 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1057 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A-~-k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN 1057 (1211)
..+ .......+..+.... . ...+.||||||+|.+.. ...+.|+..++. ....+++|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~----~~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM----YSKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS----SSSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh----cCCCCeEEEEeC
Confidence 432 111122222221110 1 13468999999998821 123344444443 235688889999
Q ss_pred CCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1058 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1058 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
.+..+.+++.+|+. .+.+..|+.+++.++++.++...++. ++..+..|+..+.|. .+.+.++++.++
T Consensus 141 ~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~ 208 (319)
T 2chq_A 141 YVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGAA 208 (319)
T ss_dssp CGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTC-HHHHHHHHHHHH
T ss_pred ChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 99999999999994 89999999999999999998876543 445577788777664 445555555554
No 86
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=2e-13 Score=153.60 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=125.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~--- 983 (1211)
+++|....++.+.+.+... .....+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 5778888888888776531 1123579999999999999999999976 678999999876432
Q ss_pred --cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 984 --WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 984 --~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
.+|... ......|..|. .++||||||+.| +...+..+.+++++......|.......++.||+
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----SPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----CHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 222210 01223455554 489999999988 2233444444444332222222222235689999
Q ss_pred ecCCC-------CCCcHHHHhccCcccccCCCCHHHHH----HHHHHHHhhc----c----cCCcccHHHHHHHcCCCcH
Q 000950 1055 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKE----E----LASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1055 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~lL~k~----~----l~~dvdL~~LA~~T~GySg 1115 (1211)
|||.. ..+.+.+..||. .+.+.+|+..+|. .+++.++... . ..++..+..|....-.-+.
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnv 221 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNI 221 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHH
T ss_pred ecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCH
Confidence 99875 246778888885 6677777766654 4666666542 1 1123335555555533467
Q ss_pred HHHHHHHHHHHhhh
Q 000950 1116 SDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~A 1129 (1211)
++|.++++.|+..+
T Consensus 222 ReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 222 RELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88999988887644
No 87
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=2e-12 Score=143.72 Aligned_cols=189 Identities=25% Similarity=0.293 Sum_probs=129.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~se 979 (1211)
..+|++++|.+.+++.|...+.. + +. .++||+||||+|||++|+++++.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 35789999999999999987752 1 12 3599999999999999999999863 4588888766
Q ss_pred cccccccchHHHHHHHHHHH--HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecC
Q 000950 980 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1057 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A--~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN 1057 (1211)
..+. ......+....... ....+.||||||+|.+. ...+..+.++++ . ....+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~~~~~L~~~le-------~----~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----QDAQQALRRTME-------M----FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----HHHHHHHHHHHH-------H----TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----HHHHHHHHHHHH-------h----cCCCCeEEEEeC
Confidence 4221 11111122111000 01346899999999882 122222222222 1 124578888899
Q ss_pred CCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1058 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1058 ~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
.+..+.+.+.+|+. .+.+++|+.++...+++.++...++. ++..++.|+..+.| +.+.+.++++.++.
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred CccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 99999999999985 78999999999999999988765543 44557788888876 45556666666553
No 88
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.43 E-value=4.1e-13 Score=133.00 Aligned_cols=101 Identities=25% Similarity=0.296 Sum_probs=89.8
Q ss_pred CCcchhhccccCCCCceeEecc-------------eEEEecccccceeecCC-CCCccceEEEEeecCCcceEEEEEecC
Q 000950 91 RIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGG 156 (1211)
Q Consensus 91 ~~pW~~L~s~~~~~p~~~i~~~-------------~~tvG~~~~c~~~l~d~-~~s~~~Ckl~~~~~~g~~~a~le~~~~ 156 (1211)
+..||+|.++..++|++.+... .++|||...||+.|.|+ .+|..||+|...+ +|. .+|+|.|+
T Consensus 2 ~~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~-~g~--~~l~DlS~ 78 (127)
T 1g6g_A 2 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDIST 78 (127)
T ss_dssp CEEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECT-TSC--EEEEECCS
T ss_pred CceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECC-CCc--EEEEECCc
Confidence 3579999999999999999887 99999999999999998 5999999999753 343 78999999
Q ss_pred cceEEECCeeeCCCceEEeeCCCEEEEccC---CceeeEeec
Q 000950 157 KGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQ 195 (1211)
Q Consensus 157 ~g~v~vng~~~~k~~~~~L~~Gdei~f~~~---~~~ayifq~ 195 (1211)
||| +|||+++.++..+.|+.||+|.|+.. ..+.|+|+.
T Consensus 79 NGT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 79 NGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 119 (127)
T ss_dssp SCC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred CCe-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEe
Confidence 999 89999999999999999999999986 356788874
No 89
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.43 E-value=4.8e-13 Score=136.37 Aligned_cols=110 Identities=24% Similarity=0.401 Sum_probs=88.6
Q ss_pred CCCCCCcchhhccccC-CCCceeEec-ceEEEecccccceeecCCCCCccceEEEEee---cC-CcceEEEEEecCcceE
Q 000950 87 KVGSRIPWARLISQCS-QNSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIE---NG-GPSGALLEITGGKGEV 160 (1211)
Q Consensus 87 ~~~~~~pW~~L~s~~~-~~p~~~i~~-~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~---~~-g~~~a~le~~~~~g~v 160 (1211)
......||++|+...+ ....+.|.. ..++|||...||+.|.|+.+|..||+|.... .+ .....+|+|.|+|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 3466789999998876 344788874 8999999999999999999999999999841 10 122388999999999
Q ss_pred EECCeeeCCCceEEeeCCCEEEEccCCceeeEeeccCccc
Q 000950 161 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 200 (1211)
Q Consensus 161 ~vng~~~~k~~~~~L~~Gdei~f~~~~~~ayifq~l~~~~ 200 (1211)
+|||+++.++ .+.|+.||+|.|+.. ..|+|.-.....
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~~ 126 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSSS 126 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSCC
T ss_pred EECCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCCc
Confidence 8999999999 899999999999873 356666544433
No 90
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.7e-12 Score=144.09 Aligned_cols=183 Identities=19% Similarity=0.167 Sum_probs=130.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 980 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL 980 (1211)
.+|++++|.+..++.|...+.. .+.+ ++||+||+|+|||++|+++++.+ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 5788999999999999987752 1222 49999999999999999999986 456888887663
Q ss_pred ccccccchHHHHHHHHHHHH-------hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 981 TSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 981 ~s~~~G~~e~~I~~lF~~A~-------k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
.+ ...++.++.... ...+.||||||+|.+.. .. .+.|+..++. ....+.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~----~~~L~~~le~----~~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GA----QQALRRTMEL----YSNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HH----HHTTHHHHHH----TTTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HH----HHHHHHHHhc----cCCCceEE
Confidence 21 234455554443 22368999999998821 11 2223333222 12457788
Q ss_pred EecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 000950 1054 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1126 (1211)
Q Consensus 1054 aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~Aa 1126 (1211)
++|+.+..+.+.+.+|+. .+.++.|+.++..++++..+...++. ++..+..|+..+.|... .+.++++.++
T Consensus 142 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r-~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMR-QAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred EEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 888989999999999984 89999999999999999988765543 45567888888877544 4444444443
No 91
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.42 E-value=3.3e-13 Score=159.81 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe---------cC---CCCCCcHHHHhccCc
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA---------TN---RPFDLDEAVVRRLPR 1072 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT---------TN---~p~~Ld~aLlrRF~~ 1072 (1211)
.|+||||+|.|- ....+.|+..+..- ..+++|++| ++ .++.+++.+++||..
T Consensus 297 ~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 297 GVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp CEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 699999999982 22334444444432 234655565 33 277899999999965
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHc-CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccC
Q 000950 1073 RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-DGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRA 1150 (1211)
Q Consensus 1073 ~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T-~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~ 1150 (1211)
+.++.|+.++..++++..+...... ++..+..++..+ .| +++....+++.|...|..+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------------------ 420 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------------------ 420 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT------------------
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc------------------
Confidence 6999999999999999988765442 444566777776 55 5666666666665433221
Q ss_pred CCCCCCccccccccHHHHHHHHHHh
Q 000950 1151 SPPLYSSVDVRPLKMDDFKYAHEQV 1175 (1211)
Q Consensus 1151 ~~~~~~~~~~r~Lt~EDF~~Aleqv 1175 (1211)
....|+.+|+..|+.-+
T Consensus 421 --------~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 --------GKDSIEKEHVEEISELF 437 (456)
T ss_dssp --------TCSSBCHHHHHHHHHHS
T ss_pred --------CCCccCHHHHHHHHHHh
Confidence 12469999999998764
No 92
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.42 E-value=2.6e-12 Score=145.86 Aligned_cols=185 Identities=24% Similarity=0.261 Sum_probs=131.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 971 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~-------------- 971 (1211)
.+|++++|.+..++.|...+.. .+.+..+||+||+|+|||++|+++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4788999999999999987752 1233568999999999999999999988542
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhh
Q 000950 972 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1037 (1211)
Q Consensus 972 ----------fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~ 1037 (1211)
++.++...- .....++.++..+.. ..+.||||||+|.+. . . ..+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----~---~----~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----R---H----SFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----H---H----HHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----H---H----HHHHHHH
Confidence 233333210 111235556655543 236799999999882 1 1 1223333
Q ss_pred hccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcHH
Q 000950 1038 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1116 (1211)
Q Consensus 1038 ~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySga 1116 (1211)
.++. ....+++|++|+.+..+.+.+++|+ ..+.++.|+.++..++++.++...++. ++..+..|+..+.| +.+
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 3332 2356888888888889999999998 789999999999999999998876543 44457788888877 566
Q ss_pred HHHHHHHHHHh
Q 000950 1117 DLKNLCVTAAH 1127 (1211)
Q Consensus 1117 DL~~L~~~Aa~ 1127 (1211)
++.++++.+..
T Consensus 216 ~~~~~l~~~~~ 226 (373)
T 1jr3_A 216 DALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 93
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.5e-12 Score=149.41 Aligned_cols=246 Identities=13% Similarity=0.154 Sum_probs=164.3
Q ss_pred cccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 000950 409 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 488 (1211)
Q Consensus 409 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 488 (1211)
-.++|+++--. +..+..|.++.-..++++++ |. .+....+.|||.||+| ....+||||+|+.++.+++.++.+
T Consensus 79 ~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~--~~-~~~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 79 PPVNWEDIAGV--EFAKATIKEIVVWPMLRPDI--FT-GLRGPPKGILLFGPPG--TGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp CCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTT--SC-GGGSCCSEEEEESSTT--SSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred CCCCHHHhCCh--HHHHHHHHHHHHHHhhChHh--Hh-hccCCCceEEEECCCC--CCHHHHHHHHHHHcCCeEEEEehH
Confidence 46899987544 88899999888777877765 32 2345567899999999 799999999999998887776653
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCccccCCCeeeee
Q 000950 489 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 568 (1211)
Q Consensus 489 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~ 568 (1211)
.+.+.+.
T Consensus 152 ~l~~~~~------------------------------------------------------------------------- 158 (357)
T 3d8b_A 152 SLTSKWV------------------------------------------------------------------------- 158 (357)
T ss_dssp GGCCSST-------------------------------------------------------------------------
T ss_pred Hhhcccc-------------------------------------------------------------------------
Confidence 3222110
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCcccccccccccCCCCchhHHH
Q 000950 569 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 648 (1211)
Q Consensus 569 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~~~~d~~~~~~~~k~ 648 (1211)
.....
T Consensus 159 ---------------------------------------------------------------------------g~~~~ 163 (357)
T 3d8b_A 159 ---------------------------------------------------------------------------GEGEK 163 (357)
T ss_dssp ---------------------------------------------------------------------------THHHH
T ss_pred ---------------------------------------------------------------------------chHHH
Confidence 00112
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC--------hhhHHHHHHHHhcC----CCCEEEEeeccCCCCccccCCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHP 716 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~~--------~~~~~~i~s~L~~L----~g~VvVIgs~~~~d~~k~k~~~ 716 (1211)
.+..+|+.+.. .+|.||||||+|.+.... .+..+.+...|+.+ ..+|+|||++|+++.
T Consensus 164 ~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~------- 233 (357)
T 3d8b_A 164 MVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE------- 233 (357)
T ss_dssp HHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG-------
T ss_pred HHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh-------
Confidence 45556666554 679999999999965421 23344455555544 358999999994322
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchh
Q 000950 717 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 717 ~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~I 796 (1211)
++ ++++|||...+++++|+...|..|
T Consensus 234 -----------------------l~-------------------------------~~l~~Rf~~~i~i~~p~~~~r~~i 259 (357)
T 3d8b_A 234 -----------------------ID-------------------------------EAARRRLVKRLYIPLPEASARKQI 259 (357)
T ss_dssp -----------------------BC-------------------------------HHHHTTCCEEEECCCCCHHHHHHH
T ss_pred -----------------------CC-------------------------------HHHHhhCceEEEeCCcCHHHHHHH
Confidence 22 266667776777777777777777
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhhhhhhhh
Q 000950 797 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 876 (1211)
Q Consensus 797 l~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a~~eik~ 876 (1211)
++.+.......+.+.+++.|+..+.||++++|..||..|...++......... .........+...+|..++.++++
T Consensus 260 l~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~---~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA---TITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc---cccccccCCcCHHHHHHHHHhcCC
Confidence 77664433344677889999999999999999999999998888754321111 111112234566778777766654
No 94
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=149.87 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=154.9
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 000950 395 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 474 (1211)
Q Consensus 395 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 474 (1211)
+.+.+.+.++.+ .-.++|+++-.. +..+..|.......+.++++ |. .+....+.|||.||+| ....+||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~--~~-~~~~~~~~vLL~GppG--tGKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPEL--FT-GLRAPARGLLLFGPPG--NGKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTT--SC-GGGCCCSEEEEESSTT--SCHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHH--hc-ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 334455556654 357899998776 88999999988878877665 22 3344578999999999 7899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 000950 475 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 554 (1211)
Q Consensus 475 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1211)
|++++.+++.++...+.+.+.
T Consensus 169 a~~~~~~~~~v~~~~l~~~~~----------------------------------------------------------- 189 (389)
T 3vfd_A 169 AAESNATFFNISAASLTSKYV----------------------------------------------------------- 189 (389)
T ss_dssp HHHTTCEEEEECSCCC----------------------------------------------------------------
T ss_pred HHhhcCcEEEeeHHHhhcccc-----------------------------------------------------------
Confidence 999998888776543332110
Q ss_pred CCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCCCCCCCccccccc
Q 000950 555 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 634 (1211)
Q Consensus 555 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~ce~~~~~~~~~~~ 634 (1211)
|.
T Consensus 190 --------------g~---------------------------------------------------------------- 191 (389)
T 3vfd_A 190 --------------GE---------------------------------------------------------------- 191 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ch----------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCCchhHHHHHHHHHHHHhhccCCCCeEEEEcChhhhhcc--------ChhhHHHHHHHHhcC----CCCEEEEe
Q 000950 635 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIG 702 (1211)
Q Consensus 635 ~~~d~~~~~~~~k~~~~~l~evl~sesk~~P~Ilf~~die~~l~~--------~~~~~~~i~s~L~~L----~g~VvVIg 702 (1211)
....+..+|+.+.. .+|.||||||+|.++.. ..++...+...|+.+ ...|+|||
T Consensus 192 -----------~~~~~~~~~~~a~~---~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 192 -----------GEKLVRALFAVARE---LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp -----------CHHHHHHHHHHHHH---SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred -----------HHHHHHHHHHHHHh---cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 01145666666665 68899999999996542 123333333444433 45799999
Q ss_pred eccCCCCccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHH
Q 000950 703 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 782 (1211)
Q Consensus 703 s~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq 782 (1211)
++|+++. +++ +++|||...
T Consensus 258 atn~~~~------------------------------l~~-------------------------------~l~~R~~~~ 276 (389)
T 3vfd_A 258 ATNRPQE------------------------------LDE-------------------------------AVLRRFIKR 276 (389)
T ss_dssp EESCGGG------------------------------CCH-------------------------------HHHTTCCEE
T ss_pred ecCCchh------------------------------cCH-------------------------------HHHcCcceE
Confidence 9994332 222 555555555
Q ss_pred hhhcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 000950 783 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 845 (1211)
Q Consensus 783 ~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~ 845 (1211)
+++++|+...|..|++.+.......+.+.++..|+..+.||++++|..||..|...++.+...
T Consensus 277 i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred EEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 566666666666665544322234457778899999999999999999999999999876543
No 95
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=8.8e-12 Score=141.11 Aligned_cols=188 Identities=15% Similarity=0.204 Sum_probs=123.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 970 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~-------------- 970 (1211)
..+|++++|++.+.+.+...+.. . .+.+. +||+||+|+|||++++++++++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 35799999999999888775510 1 12233 999999999999999999996511
Q ss_pred ---------------cEEEEeccccccccccchHHHHHHHHHHHH--------------hcCCcEEEEccchhhhcCCCC
Q 000950 971 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 1021 (1211)
Q Consensus 971 ---------------~fi~I~~seL~s~~~G~~e~~I~~lF~~A~--------------k~~PsILfIDEID~L~~~r~s 1021 (1211)
.++.++..+.. ......++..+..+. ...|.||+|||++.| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12223222110 001112444444332 225679999999986 2
Q ss_pred CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-C-
Q 000950 1022 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-S- 1099 (1211)
Q Consensus 1022 ~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~- 1099 (1211)
...+..+.+++++ . .....+|.+|+.+..+.+.+++|+ ..+.|+.|+.+++.++++..+..+++. +
T Consensus 148 ~~~~~~L~~~le~-------~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KDAQAALRRTMEK-------Y----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HHHHHHHHHHHHH-------S----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHHHHHh-------h----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 2222222222222 1 134778888888899999999999 789999999999999999998876543 4
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHh
Q 000950 1100 DVDLEGIANMADGYSGSDLKNLCVTAAH 1127 (1211)
Q Consensus 1100 dvdL~~LA~~T~GySgaDL~~L~~~Aa~ 1127 (1211)
+..+..|+..+.|. .+++.++++.++.
T Consensus 216 ~~~l~~i~~~~~G~-~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 216 KDILKRIAQASNGN-LRVSLLMLESMAL 242 (354)
T ss_dssp SHHHHHHHHHHTTC-HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 55688899888774 4455555555543
No 96
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.34 E-value=4e-12 Score=151.49 Aligned_cols=127 Identities=21% Similarity=0.359 Sum_probs=95.5
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCC
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 716 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~~-----------~~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~ 716 (1211)
+..+|+.+.. ..|.||||||+|.+.... .+..+.+...|+.+ ..+|+||++||+++.
T Consensus 97 ~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~------- 166 (476)
T 2ce7_A 97 VRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI------- 166 (476)
T ss_dssp HHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG-------
T ss_pred HHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh-------
Confidence 3445555554 689999999999943311 13444555555554 348999999995433
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccc
Q 000950 717 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 794 (1211)
Q Consensus 717 ~~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~ 794 (1211)
+|+ +++| ||++++++++|+...|.
T Consensus 167 ---------------Ld~---------------------------------------allR~gRFd~~i~i~~Pd~~~R~ 192 (476)
T 2ce7_A 167 ---------------LDP---------------------------------------ALLRPGRFDKKIVVDPPDMLGRK 192 (476)
T ss_dssp ---------------SCG---------------------------------------GGGSTTSSCEEEECCCCCHHHHH
T ss_pred ---------------hch---------------------------------------hhcccCcceeEeecCCCCHHHHH
Confidence 232 7777 89999999999999999
Q ss_pred hhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 795 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 795 ~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
+|+++|.. ..++ +++++..++..+.||+|+||+.+|..|+..+..+
T Consensus 193 ~Il~~~~~--~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 193 KILEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp HHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 99999864 3344 5678999999999999999999999999988754
No 97
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=4.1e-13 Score=164.30 Aligned_cols=173 Identities=20% Similarity=0.282 Sum_probs=106.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE----eccccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 985 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I----~~seL~s~~~ 985 (1211)
.|.|++.+++.+...+... .+..... ...+...+|||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 5788998887774433210 0000000 1112234799999999999999999999987665542 2233322211
Q ss_pred cchH----HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCCC
Q 000950 986 GEGE----KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 986 G~~e----~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ld--gl~~k~~~~VlVIaTTN~p 1059 (1211)
.... ......+..| ..+||||||||.+ ++..+..+..++++....+. +.....+.++.||+|||+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 1100 0001233334 3489999999987 44455556566555443332 3333334678999999988
Q ss_pred C-------------CCcHHHHhccCc-ccccCCCCHHHHHHHHHHHHhh
Q 000950 1060 F-------------DLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1060 ~-------------~Ld~aLlrRF~~-~I~v~lPd~eeR~eILk~lL~k 1094 (1211)
. .|++++++||+. .+..+.|+.+ ...|.++++..
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6 899999999975 4555667777 88888887764
No 98
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=3.4e-12 Score=153.08 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=101.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-----ccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-----ITS 982 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~se-----L~s 982 (1211)
.|+|.+++++.+...+.. ..++||+||||||||+||++||+.++ .+|..+++.- +++
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 478889988877665531 14799999999999999999999884 4666666532 222
Q ss_pred ccccchHHHHHHHHHHHHhc---CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC
Q 000950 983 KWFGEGEKYVKAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1059 (1211)
Q Consensus 983 ~~~G~~e~~I~~lF~~A~k~---~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p 1059 (1211)
.+.+... .-...|..+.+. .++|||||||+.+ ++..+..+..++++....+.+.....+.++ +|+|||+.
T Consensus 87 ~~~~~~~-~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~l 159 (500)
T 3nbx_X 87 PLSIQAL-KDEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNEL 159 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSC
T ss_pred cccHHHH-hhchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccC
Confidence 2211110 112233322221 4679999999876 334455555666655545555443333444 56666653
Q ss_pred C---CCcHHHHhccCcccccCCCCH-HHHHHHHHHHH
Q 000950 1060 F---DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1092 (1211)
Q Consensus 1060 ~---~Ld~aLlrRF~~~I~v~lPd~-eeR~eILk~lL 1092 (1211)
. .+.+++++||...+.++.|+. +++..|++...
T Consensus 160 pe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 160 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2 244699999988899999987 77888887643
No 99
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.27 E-value=7.1e-12 Score=146.19 Aligned_cols=109 Identities=25% Similarity=0.390 Sum_probs=98.5
Q ss_pred CCCcchhhccccCCCCceeEecceEEEecccccceeecCCCC---------CccceEEEEee-cCCcceEEEEEecCcce
Q 000950 90 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRIE-NGGPSGALLEITGGKGE 159 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i~~~~~tvG~~~~c~~~l~d~~~---------s~~~Ckl~~~~-~~g~~~a~le~~~~~g~ 159 (1211)
...|||+|.+....++.+.+....++|||+..||+.|+|+.+ |..||.|.+.. ..+..+.+|+|.|+|||
T Consensus 6 ~~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt 85 (419)
T 3i6u_A 6 TPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT 85 (419)
T ss_dssp CCCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE
T ss_pred cCCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc
Confidence 356999999999999999999999999999999999999976 99999998764 44566789999999999
Q ss_pred EEECCeeeCCCceEEeeCCCEEEEccCCceeeEeeccCcc
Q 000950 160 VEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 199 (1211)
Q Consensus 160 v~vng~~~~k~~~~~L~~Gdei~f~~~~~~ayifq~l~~~ 199 (1211)
+|||..++|+.+..|++||+|.|+...+..|+|.++...
T Consensus 86 -~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~ 124 (419)
T 3i6u_A 86 -FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 124 (419)
T ss_dssp -EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSS
T ss_pred -eECcccccCCCcccCCCCCEeeeeccccceEEEeccccc
Confidence 899999999999999999999999999999999877544
No 100
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=1.2e-11 Score=136.00 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=57.8
Q ss_pred ccccccccccccchhhHHHHHHhhhhhcccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 408 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 408 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
.-+++|+++.-+ +..+..|.......+++++.- +++ + ...+.|||.||+| ....+||||||+.++.+++.++
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 346889998877 999999999888788886653 232 2 3356699999999 7899999999999988877765
Q ss_pred c
Q 000950 487 S 487 (1211)
Q Consensus 487 s 487 (1211)
.
T Consensus 84 ~ 84 (285)
T 3h4m_A 84 G 84 (285)
T ss_dssp G
T ss_pred h
Confidence 4
No 101
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=2.9e-11 Score=131.46 Aligned_cols=126 Identities=17% Similarity=0.319 Sum_probs=84.8
Q ss_pred HHHHHHHhhccCCCCeEEEEcChhhhhccC-----------hhhHHHHHHHHhcC--CCCEEEEeeccCCCCccccCCCC
Q 000950 651 NELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 717 (1211)
Q Consensus 651 ~~l~evl~sesk~~P~Ilf~~die~~l~~~-----------~~~~~~i~s~L~~L--~g~VvVIgs~~~~d~~k~k~~~~ 717 (1211)
..+|+.+.. ..|.||||||+|.+.... .+..+.+...++.+ ..+++||+++|+++.
T Consensus 94 ~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~-------- 162 (257)
T 1lv7_A 94 RDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV-------- 162 (257)
T ss_dssp HHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT--------
T ss_pred HHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh--------
Confidence 344444433 678999999999854321 13444455556655 348999999995443
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccch
Q 000950 718 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 795 (1211)
Q Consensus 718 ~~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~ 795 (1211)
+++ +++| ||++.+++++|+...|.+
T Consensus 163 ----------------------l~~-------------------------------~l~r~~rf~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 163 ----------------------LDP-------------------------------ALLRPGRFDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp ----------------------SCG-------------------------------GGGSTTSSCEEEECCCCCHHHHHH
T ss_pred ----------------------CCH-------------------------------HHcCCCcCCeEEEeCCCCHHHHHH
Confidence 222 4444 555566666666666666
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 796 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 796 Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
|++.|. ...++ ++.++..++..+.||+++||+.+|..|+.+|..+
T Consensus 190 il~~~~--~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 190 ILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHH--TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--hcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 666653 22334 4667788999999999999999999999998764
No 102
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=122.78 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=70.6
Q ss_pred ceeEec-ceEEEecccccceeecCCCCCccceEEEEee--------cCCcceEEEEEe-cCcceEEECCeeeCCCceEEe
Q 000950 106 HLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIE--------NGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVL 175 (1211)
Q Consensus 106 ~~~i~~-~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~--------~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L 175 (1211)
.+.|.. +.|||||...||+.|.|+++|..||.|..-. ..+. ..+|+|. |+||| +|||+++.++..+.|
T Consensus 34 ~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~-~~~l~Dl~StNGT-~vNg~ri~~~~~~~L 111 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGP-GFYLYDLGSTHGT-FLNKTRIPPRTYCRV 111 (130)
T ss_dssp EEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------C-CEEEEECSCSSCE-EETTEECCTTCCEEC
T ss_pred eEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCC-cceEeeCCCCCce-EECCEECCCCceeEC
Confidence 345544 6689999999999999999999999996421 1222 2677786 78999 899999999999999
Q ss_pred eCCCEEEEccCCceeeEee
Q 000950 176 RGGDELVFSPSGKHSYIFQ 194 (1211)
Q Consensus 176 ~~Gdei~f~~~~~~ayifq 194 (1211)
+.||+|.|+.+.+ .||||
T Consensus 112 ~~GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 112 HVGHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp CTTCEEEETTCSE-EEEEE
T ss_pred CCCCEEEECCceE-EEEEc
Confidence 9999999999887 59987
No 103
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=1.5e-10 Score=131.34 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=119.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 979 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg-----~~fi~I~~se 979 (1211)
..+|+++.|++.+++.|...+.. + +. .++||+||||||||++|+++|+.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35789999999999999887752 1 12 2499999999999999999999873 3467777665
Q ss_pred cccccccchHHHHHHHHHHHHh------cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEE
Q 000950 980 ITSKWFGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1053 (1211)
Q Consensus 980 L~s~~~G~~e~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVI 1053 (1211)
..+ ...++..+..... ..+.|++|||+|.|. ...+..+.++++. . ...+.+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~~~~L~~~le~-------~----~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAAQNALRRVIER-------Y----TKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHHHHHHHHHHHH-------T----TTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHHHHHHHHHHhc-------C----CCCeEEE
Confidence 311 1233333322221 135899999999882 2223333333322 1 2446777
Q ss_pred EecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccC-CcccHHHHHHHcCCCcH
Q 000950 1054 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1054 aTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~-~dvdL~~LA~~T~GySg 1115 (1211)
.+||.+..+.+++++|+. .+.+..++.++..+++...+....+. ++..+..++..+.|...
T Consensus 145 l~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHH
T ss_pred EEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888999999999999984 78899999999999999888654432 34456777777766433
No 104
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.24 E-value=6.8e-12 Score=125.68 Aligned_cols=132 Identities=8% Similarity=0.111 Sum_probs=87.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 986 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G 986 (1211)
+++|.+...+.+.+.+... .....+|||+||||||||++|++|++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 4677788888887766531 1123569999999999999999999887 78999 999886554
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-------
Q 000950 987 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 1059 (1211)
Q Consensus 987 ~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p------- 1059 (1211)
......|..+. .++|||||||.| +...+..+ +. .+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l-----~~~~q~~L---l~----~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHL-----TREQQYHL---VQ----LQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGS-----CHHHHHHH---HH----HHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHC-----CHHHHHHH---HH----HHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 23445666664 489999999998 22222222 22 2211 22457888888864
Q ss_pred CCCcHHHHhccCcccccCCCC
Q 000950 1060 FDLDEAVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1060 ~~Ld~aLlrRF~~~I~v~lPd 1080 (1211)
..+.+.+..|+. .+.+.+|.
T Consensus 124 ~~~~~~L~~rl~-~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECCC
T ss_pred CCCCHHHHHHhc-CCEEeCCC
Confidence 246677777763 44555554
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=2.8e-12 Score=128.35 Aligned_cols=132 Identities=13% Similarity=0.159 Sum_probs=86.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchH
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 989 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e 989 (1211)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 46788888888888775311 1235799999999999999999999888 99999998865433
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCC-CC----CcH
Q 000950 990 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 1064 (1211)
Q Consensus 990 ~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p-~~----Ld~ 1064 (1211)
...+|..+. .++|||||||.+ +...+..+.++++.. ...++.+|+|||.+ .. +.+
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l-----~~~~q~~Ll~~l~~~----------~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQY-----SRNIQTGITFIIGKA----------ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTC-----CHHHHHHHHHHHHHH----------TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHC-----CHHHHHHHHHHHHhC----------CCCCEEEEEecCCCHHHHHhCccH
Confidence 456666654 489999999988 222233333333221 12457888888754 33 445
Q ss_pred HHHhccCcccccCCCC
Q 000950 1065 AVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1065 aLlrRF~~~I~v~lPd 1080 (1211)
.+..|+. .+.+.+|.
T Consensus 127 ~L~~rl~-~~~i~lPp 141 (143)
T 3co5_A 127 KLAGLFS-ESVVRIPP 141 (143)
T ss_dssp HHHHHSS-SEEEEECC
T ss_pred HHHHHhc-CcEEeCCC
Confidence 5666763 33444443
No 106
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.21 E-value=2.9e-11 Score=121.41 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=86.6
Q ss_pred CCCcchhhccccCCCCceeEe-cceEEEecccccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCcceEEEC
Q 000950 90 SRIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 163 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i~-~~~~tvG~~~~c~~~l~d~~----~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vn 163 (1211)
...+|+ |...-+....+.+. +..+||||...||+.|.|+. +|..||+|...+ +|. .+|+|. |+||| +||
T Consensus 6 ~~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vN 80 (138)
T 2pie_A 6 GGRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLN 80 (138)
T ss_dssp GCEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TSC--EEEEECSCSSCE-EET
T ss_pred CCccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CCc--EEEEECCCCCCe-EEC
Confidence 456796 55555566688887 68899999999999999999 999999999743 343 789998 89999 899
Q ss_pred CeeeCCCceEEeeCCCEEEEccC----CceeeEeeccCcc
Q 000950 164 GNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQLSDD 199 (1211)
Q Consensus 164 g~~~~k~~~~~L~~Gdei~f~~~----~~~ayifq~l~~~ 199 (1211)
|+++.++..+.|+.||+|.|+.+ ....|.|+.++.+
T Consensus 81 g~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~~~ 120 (138)
T 2pie_A 81 RARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEED 120 (138)
T ss_dssp TEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEEEEE
T ss_pred CEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEecchh
Confidence 99999999999999999999985 3456777765433
No 107
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.20 E-value=4.5e-11 Score=129.28 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=51.7
Q ss_pred ccccccccccchhhHHHHHHhhhhhcccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 000950 410 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 488 (1211)
Q Consensus 410 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 488 (1211)
+++|+++--+ +..|..|...... +++++ |..++ ....+.|||.||+| ....+||||||++++.+++.++..
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 5789998776 8888888776553 44433 22332 23456799999999 789999999999998888777654
Q ss_pred C
Q 000950 489 L 489 (1211)
Q Consensus 489 ~ 489 (1211)
.
T Consensus 74 ~ 74 (262)
T 2qz4_A 74 E 74 (262)
T ss_dssp T
T ss_pred H
Confidence 3
No 108
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.19 E-value=9.5e-11 Score=121.08 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=86.3
Q ss_pred CCCcchhhccccCCCCceeEecc-------------eEEEecccccceeecCC-CCCccceEEEEeecCCcceEEEEEec
Q 000950 90 SRIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITG 155 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i~~~-------------~~tvG~~~~c~~~l~d~-~~s~~~Ckl~~~~~~g~~~a~le~~~ 155 (1211)
...+|++|+-..-..+...+.-. .++|||...||+.|.|+ .+|..||+|...+ +|. .+|+|.|
T Consensus 29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~-~g~--~~l~DlS 105 (164)
T 1g3g_A 29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDIS 105 (164)
T ss_dssp CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECS-TTC--EEEEECC
T ss_pred CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECC-CCC--EEEEECC
Confidence 45678899988776665555443 89999999999999998 5999999999753 344 7899999
Q ss_pred CcceEEECCeeeCCCceEEeeCCCEEEEccC---CceeeEeecc
Q 000950 156 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQL 196 (1211)
Q Consensus 156 ~~g~v~vng~~~~k~~~~~L~~Gdei~f~~~---~~~ayifq~l 196 (1211)
+||| +|||+++.++..+.|+.||+|.|+.. ....|+|..-
T Consensus 106 ~NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~ 148 (164)
T 1g3g_A 106 TNGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 148 (164)
T ss_dssp SSCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEEC
T ss_pred CCCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeC
Confidence 9999 89999999999999999999999996 4567888743
No 109
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.18 E-value=3e-11 Score=144.86 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=57.6
Q ss_pred hHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 774 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 774 ALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
+++| ||++++++++|+...|.+|++.|.. ..++ +++++..||..+.||+|+||+.+|..|+.+|..+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~ 254 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 254 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666 8999999999999999999998853 3345 5778999999999999999999999999888653
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.16 E-value=5.5e-10 Score=126.92 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=113.2
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 000950 914 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----------------------- 970 (1211)
Q Consensus 914 le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~----------------------- 970 (1211)
+++..+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 7 ~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45666777666542 234467999999999999999999998853
Q ss_pred -cEEEEeccccccccccchHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCccc
Q 000950 971 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1045 (1211)
Q Consensus 971 -~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k 1045 (1211)
.++.++...- + -......++.++..+... ...|++|||+|.|. .+ ..+.|+..++.
T Consensus 74 ~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~----a~naLLk~lEe---- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DA----AANALLKTLEE---- 134 (334)
T ss_dssp TTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HH----HHHHHHHHHTS----
T ss_pred CCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HH----HHHHHHHHhcC----
Confidence 2344433210 0 012234567777776543 35799999999982 11 23344444443
Q ss_pred CCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1046 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1046 ~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
+..++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..++++... ..++..+..++..+.|..+
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPG 199 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHH
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 2356888888888999999999998 579999999999998888764 2234556778888877544
No 111
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.14 E-value=2e-10 Score=140.79 Aligned_cols=222 Identities=19% Similarity=0.254 Sum_probs=131.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecccccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSSITS 982 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~---~fi~I~~seL~s 982 (1211)
..|++++|.+.+++.+...+.. ...++|+||||||||+||++|+..+.. ..+.+.+.....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 5788999999999888877652 247999999999999999999998742 222232211100
Q ss_pred --ccc-----cchHH-------------------------------------------------HHHHHHH---------
Q 000950 983 --KWF-----GEGEK-------------------------------------------------YVKAVFS--------- 997 (1211)
Q Consensus 983 --~~~-----G~~e~-------------------------------------------------~I~~lF~--------- 997 (1211)
..+ +.... ....+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 000 00000 0111111
Q ss_pred --------------HHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCC----------cccCCccEEEE
Q 000950 998 --------------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDKERVLVL 1053 (1211)
Q Consensus 998 --------------~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl----------~~k~~~~VlVI 1053 (1211)
.+....+++|||||++.| ++..+..+.+++++-...+.+. ....+.++.||
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 111224589999999998 3455666666666554444332 11123578899
Q ss_pred EecCCC--CCCcHHHHhccC---cccccCC--C-CHHHHHHHHHHHHhhcc---c---CCcccHHHHHHHc---CCC---
Q 000950 1054 AATNRP--FDLDEAVVRRLP---RRLMVNL--P-DAPNREKIIRVILAKEE---L---ASDVDLEGIANMA---DGY--- 1113 (1211)
Q Consensus 1054 aTTN~p--~~Ld~aLlrRF~---~~I~v~l--P-d~eeR~eILk~lL~k~~---l---~~dvdL~~LA~~T---~Gy--- 1113 (1211)
+|||+. +.+++++++||. ..+.++. + ..+....+++.+.+... . .++..+..|.... .|.
T Consensus 257 ~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~ 336 (604)
T 3k1j_A 257 AAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGH 336 (604)
T ss_dssp EEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTE
T ss_pred EecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccc
Confidence 999986 689999999985 2333332 1 24556666655544321 1 1233344454433 443
Q ss_pred ---cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccccccHHHHHHHHHH
Q 000950 1114 ---SGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVRPLKMDDFKYAHEQ 1174 (1211)
Q Consensus 1114 ---SgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleq 1174 (1211)
+.++|.++++.|...|..+ ....|+.+|+..|+..
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~--------------------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKK--------------------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhc--------------------------CcccccHHHHHHHHHh
Confidence 6788888888876543221 1235888888888854
No 112
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.13 E-value=1.2e-10 Score=116.37 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred CCCCcchhhccccCCC---CceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECC
Q 000950 89 GSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 164 (1211)
Q Consensus 89 ~~~~pW~~L~s~~~~~---p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng 164 (1211)
....|||+|.-..... ..+.|....++|||...||+.|.|+.+|..||+|...++++. .+|+|. |+||| +|||
T Consensus 19 ~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT-~vNg 95 (132)
T 3va4_A 19 SHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGT-QIVK 95 (132)
T ss_dssp -CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCE-EETT
T ss_pred ccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCe-EECC
Confidence 4567999998776444 368888889999999999999999999999999997654554 678887 78899 8999
Q ss_pred ee--eCCCceEEeeCCCEEEEccCCceeeEeecc
Q 000950 165 NV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 196 (1211)
Q Consensus 165 ~~--~~k~~~~~L~~Gdei~f~~~~~~ayifq~l 196 (1211)
++ +.++..+.|+.||+|.|+.. .+.|..+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~~---~l~f~~~ 126 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFADF---PCQYHRL 126 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETTE---EEEEEEC
T ss_pred EEcccCCCCEEECCCCCEEEECCE---EEEEEEC
Confidence 98 67888999999999999643 4556543
No 113
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.11 E-value=7.3e-11 Score=123.92 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=79.8
Q ss_pred CCCcchhhccccCC-----CCceeEecce--EEEecccccceeecCCCCCccceEEEEee-cCCc----------ceEEE
Q 000950 90 SRIPWARLISQCSQ-----NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALL 151 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~-----~p~~~i~~~~--~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~-~~g~----------~~a~l 151 (1211)
...+|+.++.+.+. ...+.|.... ++|||+..||+.|.|+.+|..||+|.... ..|. ...+|
T Consensus 22 ~~~~~g~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l 101 (182)
T 1qu5_A 22 KKKGNGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWY 101 (182)
T ss_dssp CCSSSSCCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEE
T ss_pred ccCCCccEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEE
Confidence 34455555544322 3467777666 99999999999999999999999999764 1121 34789
Q ss_pred EEecCcceEEECCeeeCCCceEEeeCCCEEEEccC--CceeeEee
Q 000950 152 EITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 194 (1211)
Q Consensus 152 e~~~~~g~v~vng~~~~k~~~~~L~~Gdei~f~~~--~~~ayifq 194 (1211)
+|.|+||| ||||+++.++..+.|+.||+|.|+.. |...+.|.
T Consensus 102 ~DlStNGT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 102 CHTGTNVS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CCCSSSCC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred EECCcCCe-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 99999999 89999999999999999999999433 44445554
No 114
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.11 E-value=2.6e-11 Score=132.33 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred hHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 000950 774 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 841 (1211)
Q Consensus 774 ALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~ 841 (1211)
+++| ||...+++++|+...|..|++.+. ...++ .+.+++.|+..+.||+|.+|+.+|..|...|..
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHI--KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHT--SSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHH--hcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4444 566666677777767777766543 22233 567789999999999999999999999988764
No 115
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.09 E-value=1.6e-09 Score=124.46 Aligned_cols=205 Identities=15% Similarity=0.086 Sum_probs=126.9
Q ss_pred ccccCcHHHHHHHHHHH-HcccCChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 000950 909 DDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINIS 976 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V-~~pL~~pelf~k~~i~~Pp~gILL--~GPpGTGKT~LArAIA~el---------g~~fi~I~ 976 (1211)
++++|.+...+.|.+.+ ..... +....+..++| +||+|+|||+|++++++.+ ++.++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 57899999888888877 42111 10123457999 9999999999999999876 56788888
Q ss_pred cccccc------cc---c-------cc-hHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 977 MSSITS------KW---F-------GE-GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 977 ~seL~s------~~---~-------G~-~e~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
|..... .. + +. .......+..... ...|.||+|||+|.+..... ...+.+..++ ..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~----~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLL----RV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHH----TH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHH----HH
Confidence 743111 00 0 11 1222333333332 23578999999999853211 1122222222 22
Q ss_pred ccCCcccCC--ccEEEEEecCCCC---CCc---HHHHhccCcccccCCCCHHHHHHHHHHHHhhcc---cCCcccHHHHH
Q 000950 1039 WDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE---LASDVDLEGIA 1107 (1211)
Q Consensus 1039 ldgl~~k~~--~~VlVIaTTN~p~---~Ld---~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~---l~~dvdL~~LA 1107 (1211)
+.... ... .++.+|++|+.+. .++ +.+.+++...+.+++++.++..++++..+.... ..++..+..++
T Consensus 168 ~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 22111 012 5688888887554 334 566677766699999999999999988776422 22344577888
Q ss_pred HHcC------CCcHHHHHHHHHHHHhhh
Q 000950 1108 NMAD------GYSGSDLKNLCVTAAHCP 1129 (1211)
Q Consensus 1108 ~~T~------GySgaDL~~L~~~Aa~~A 1129 (1211)
..+. |. +..+..++..|+..+
T Consensus 247 ~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 8888 64 567777777776544
No 116
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.08 E-value=2.6e-10 Score=111.32 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=77.6
Q ss_pred CCCCcchhhccccCCC--CceeEec-ceEEEecc-cccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEEC
Q 000950 89 GSRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 163 (1211)
Q Consensus 89 ~~~~pW~~L~s~~~~~--p~~~i~~-~~~tvG~~-~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vn 163 (1211)
....||.+|.-..... -.+.+.. ..++|||. ..||+.|.|+.+|..||+|.... +. .+|+|. ++||| +||
T Consensus 7 ~~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~--~~--~~l~Dl~S~nGT-~vn 81 (118)
T 1uht_A 7 GMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--GN--WVIQDLGSSNGT-LLN 81 (118)
T ss_dssp CCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS--SS--EEEECCCCSSCC-EES
T ss_pred CCCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC--CE--EEEEECCCCCCe-EEC
Confidence 4556788777654322 3566765 68999999 89999999999999999999753 33 889999 68999 899
Q ss_pred CeeeCCCceEEeeCCCEEEEccCC
Q 000950 164 GNVHPKDSQVVLRGGDELVFSPSG 187 (1211)
Q Consensus 164 g~~~~k~~~~~L~~Gdei~f~~~~ 187 (1211)
|+++.++..+.|+.||+|.|+...
T Consensus 82 g~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 82 SNALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SSBCCTTCEEECCTTEEEEETTTE
T ss_pred CEECCCCCeEEcCCCCEEEECCeE
Confidence 999999999999999999997664
No 117
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.03 E-value=4.7e-10 Score=115.23 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=72.7
Q ss_pred CceeEecce--EEEecccccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCcceEEECCeeeCCCc
Q 000950 105 SHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGKGEVEVNGNVHPKDS 171 (1211)
Q Consensus 105 p~~~i~~~~--~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~-~~g~----------~~a~le~~~~~g~v~vng~~~~k~~ 171 (1211)
..+.|.... ++|||...||+.|.|+.+|..||+|.... ..|. ...+|+|.|+||| +|||+++.++.
T Consensus 18 ~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNGT-~VNg~ri~~~~ 96 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVS-YLNNNRMIQGT 96 (158)
T ss_dssp CCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTCC-EETTEECCSSE
T ss_pred eEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCCe-EECCEEcCCCc
Confidence 467777655 99999999999999999999999999764 1121 3478999999999 89999999999
Q ss_pred eEEeeCCCEEEEccC--CceeeEee
Q 000950 172 QVVLRGGDELVFSPS--GKHSYIFQ 194 (1211)
Q Consensus 172 ~~~L~~Gdei~f~~~--~~~ayifq 194 (1211)
.+.|+.||+|.|+.. |...+.|+
T Consensus 97 ~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 97 KFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp EEECCSSCCEESCCCTTTTCCCCEE
T ss_pred eEEcCCCCEEEEeecCCCCEEEEEE
Confidence 999999999999433 33344444
No 118
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.03 E-value=7e-10 Score=105.19 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEE
Q 000950 104 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 182 (1211)
Q Consensus 104 ~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~ 182 (1211)
-..+.+....++|||...||+.|.|+.+|..||+|... +|. .+|++. ++||| +|||+++. .+.|+.||+|.
T Consensus 15 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEE
T ss_pred CcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCE-EECCEECc---eEECCCCCEEE
Confidence 34677788889999999999999999999999999974 333 789999 67899 89999997 58999999999
Q ss_pred Ecc
Q 000950 183 FSP 185 (1211)
Q Consensus 183 f~~ 185 (1211)
|+.
T Consensus 87 iG~ 89 (100)
T 3po8_A 87 LGH 89 (100)
T ss_dssp ETT
T ss_pred ECC
Confidence 976
No 119
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.02 E-value=5.2e-10 Score=111.48 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=66.7
Q ss_pred ceeEecceEEEecccccceeecCCCCCccceEEEEeec-CCcceEEEEEe------cCcceEEECCeeeCCCceEEeeCC
Q 000950 106 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGPSGALLEIT------GGKGEVEVNGNVHPKDSQVVLRGG 178 (1211)
Q Consensus 106 ~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~-~g~~~a~le~~------~~~g~v~vng~~~~k~~~~~L~~G 178 (1211)
.+.|....+||||...||+.|.|+.+|..||+|..... .|....+|+|. |+||| +|||+++.+ +.|+.|
T Consensus 24 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg~~i~~---~~L~~G 99 (131)
T 3hx1_A 24 EVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MINGKKVQE---HIIQTG 99 (131)
T ss_dssp EEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETTEEESE---EECCTT
T ss_pred EEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECCEEeEe---EECCCC
Confidence 67788899999999999999999999999999987632 34334889997 89999 899999986 999999
Q ss_pred CEEEEccCCc
Q 000950 179 DELVFSPSGK 188 (1211)
Q Consensus 179 dei~f~~~~~ 188 (1211)
|+|.|+....
T Consensus 100 D~I~iG~~~~ 109 (131)
T 3hx1_A 100 DEIVMGPQVS 109 (131)
T ss_dssp CEEECSTTCE
T ss_pred CEEEECCEEE
Confidence 9999987644
No 120
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.7e-09 Score=119.32 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=101.5
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccccccccc
Q 000950 913 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 986 (1211)
Q Consensus 913 Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el------g~~fi~I~~seL~s~~~G 986 (1211)
|++++.+.|...+.. .+ .+.+||+||||+|||++|+++|+.+ ...++.+++.. . .
T Consensus 1 g~~~~~~~L~~~i~~-------------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--N 61 (305)
T ss_dssp ---CHHHHHHHHHHT-------------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--C
T ss_pred ChHHHHHHHHHHHHC-------------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--C
Confidence 456677777776652 12 3589999999999999999999874 35677777542 0 1
Q ss_pred chHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCC
Q 000950 987 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1062 (1211)
Q Consensus 987 ~~e~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~L 1062 (1211)
..-..++.++..+...+ ..|+||||+|.|- . ...+.|+..++. ++..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt-----~-------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-----Q-------QAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-----H-------HHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC-----H-------HHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 22345777887776543 3699999999982 1 123344444443 23567788888888999
Q ss_pred cHHHHhccCcccccCCCCHHHHHHHHHHHH
Q 000950 1063 DEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1092 (1211)
Q Consensus 1063 d~aLlrRF~~~I~v~lPd~eeR~eILk~lL 1092 (1211)
.+++++| .+.|..|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999988876
No 121
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.01 E-value=3.6e-10 Score=150.45 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=108.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCC----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 000950 903 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 955 (1211)
Q Consensus 903 e~~~sfddI~Gle~vk~~L~e~V~~pL~~----------pelf~k------~~i---------~~Pp~g--ILL~GPpGT 955 (1211)
...++|++++|+++.++.+.+.+.+|+.+ ++.|.. .++ .-+|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44679999999999999999999998843 556654 111 113455 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEeccccc------------cccccc----hHHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000950 956 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 956 GKT~LArAIA~el---g~~fi~I~~seL~------------s~~~G~----~e~~I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
|||+||++++.+. +-+.+.|+..+.. ++|+++ +|+.++.+|..|+...|++||+|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5666677766533 567777 89999999999999999999999999998
Q ss_pred cCCC---CCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC
Q 000950 1017 GRRE---NPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1058 (1211)
Q Consensus 1017 ~~r~---s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~ 1058 (1211)
+.+. ..+ ......+++++++..++++... .+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7731 111 1245567888899888876543 567777 5554
No 122
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=98.99 E-value=4.4e-10 Score=113.80 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=81.3
Q ss_pred CCCcchhhccccCCCCceeE-ecceEEEecccccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCcceEEEC
Q 000950 90 SRIPWARLISQCSQNSHLSM-TGAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 163 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i-~~~~~tvG~~~~c~~~l~d~~----~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vn 163 (1211)
...+|+-+ ..-+....+.+ ....++|||...||+.|.|+. +|..||+|...+ +|. .+|+|. ++||| +||
T Consensus 14 ~~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vN 88 (145)
T 2csw_A 14 GGRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLN 88 (145)
T ss_dssp CSEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TSC--EEEEBSSCSSCE-EES
T ss_pred CCccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CCe--EEEEECCCCCCe-EEC
Confidence 34578744 33344456666 457899999999999999999 999999999743 343 788885 88999 899
Q ss_pred CeeeCCCceEEeeCCCEEEEccC----CceeeEeeccCc
Q 000950 164 GNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQLSD 198 (1211)
Q Consensus 164 g~~~~k~~~~~L~~Gdei~f~~~----~~~ayifq~l~~ 198 (1211)
|+++.++..+.|+.||+|.|+.+ ....|.|+...+
T Consensus 89 g~~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~~~ 127 (145)
T 2csw_A 89 RARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEE 127 (145)
T ss_dssp SCBCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEEEE
T ss_pred CEECCCCccEECCCCCEEEECCCCCCCceEEEEEEeccc
Confidence 99999999999999999999985 334566654433
No 123
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.99 E-value=1.5e-09 Score=126.21 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=119.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 982 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s---- 982 (1211)
.+.|....++.+.+.+.. . ......+||+|++||||+++|++|.... +.+|+.++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK-------I-----SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH-------H-----TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHH-------h-----cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 445555566666665542 1 1123468999999999999999998876 47999999987533
Q ss_pred -ccccchHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEE
Q 000950 983 -KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1054 (1211)
Q Consensus 983 -~~~G~~e~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIa 1054 (1211)
..+|.... ...+.|+.|.. ++||||||+.| +...+..+.+++++-.....|.......++.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 22332110 12345666654 89999999998 4445556666655533222222222235789999
Q ss_pred ecCCC-------CCCcHHHHhccCcccccCCCCHHHHH----HHHHHHHhhc----ccC-Cccc---HHHHHHHcCCCcH
Q 000950 1055 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAKE----ELA-SDVD---LEGIANMADGYSG 1115 (1211)
Q Consensus 1055 TTN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR~----eILk~lL~k~----~l~-~dvd---L~~LA~~T~GySg 1115 (1211)
|||.. ..+.+.+..|+ ..+.+.+|...+|. .++++++.+. ... .... ++.|....=-.+.
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv 356 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 356 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 99863 34556666676 45667888877664 3555555442 111 1223 3333333322345
Q ss_pred HHHHHHHHHHHhh
Q 000950 1116 SDLKNLCVTAAHC 1128 (1211)
Q Consensus 1116 aDL~~L~~~Aa~~ 1128 (1211)
++|+++++.|+..
T Consensus 357 reL~~~i~~~~~~ 369 (387)
T 1ny5_A 357 RELKNVIERAVLF 369 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6888887777653
No 124
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.99 E-value=6e-10 Score=120.87 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=54.1
Q ss_pred hHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 774 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 774 ALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
+++| ||++.+++++|+...|.+|++.|.. ...+ +++++..||..+.||+++||+.+|..|+..|..+
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5655 7888888888888888888887743 2334 5677899999999999999999999999888753
No 125
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=98.99 E-value=1.8e-09 Score=105.01 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=70.6
Q ss_pred CCCceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEE
Q 000950 103 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 181 (1211)
Q Consensus 103 ~~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei 181 (1211)
.-..+.|....++|||...||+.|.|+.+|..||+|... +|. .+|++. ++||| +|||+.+. .+.|+.||+|
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i 93 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GGE--FQVVDVGSLNGT-YVNREPVD---SAVLANGDEV 93 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TTE--EEEEECSCSSCE-EETTEECS---EEEECTTCEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEE
Confidence 445678888899999999999999999999999999985 343 889999 68999 89999997 5899999999
Q ss_pred EEccCCceeeEeeccCcc
Q 000950 182 VFSPSGKHSYIFQQLSDD 199 (1211)
Q Consensus 182 ~f~~~~~~ayifq~l~~~ 199 (1211)
.|+. ..+.|+..+.+
T Consensus 94 ~iG~---~~l~~~~~~~~ 108 (115)
T 2xt9_B 94 QIGK---FRLVFLTGPKS 108 (115)
T ss_dssp EETT---EEEEEEC----
T ss_pred EECC---EEEEEEeCCCc
Confidence 9965 46677754443
No 126
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1e-09 Score=112.75 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=74.6
Q ss_pred ceeEec-ceEEEeccc---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeC
Q 000950 106 HLSMTG-AVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 168 (1211)
Q Consensus 106 ~~~i~~-~~~tvG~~~---------------~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~ 168 (1211)
.+.|.. +.|+|||.. .||+.|.++.+|..||+|.....+|....+|+|. |+||| +|||+++.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEcC
Confidence 566654 689999984 5999999999999999999876666556889998 89999 89999999
Q ss_pred CCceEEeeCCCEEEEccCC---ceeeEee
Q 000950 169 KDSQVVLRGGDELVFSPSG---KHSYIFQ 194 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~---~~ayifq 194 (1211)
++..+.|+.||+|.|+.+. .+-++|.
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 9999999999999999874 4555553
No 127
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.98 E-value=9.1e-10 Score=102.32 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 000950 1080 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1159 (1211)
Q Consensus 1080 d~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~ 1159 (1211)
+.++|.+||+.++++..+..++|+..||..|+||||+||.++|++|++.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 578999999999999988889999999999999999999999999999998871
Q ss_pred cccccHHHHHHHHHHhccCccccccchhhhhHHH
Q 000950 1160 VRPLKMDDFKYAHEQVCASVSSESTNMNELLQWN 1193 (1211)
Q Consensus 1160 ~r~Lt~EDF~~Aleqv~pS~s~e~~~~~~~v~Wn 1193 (1211)
...|+++||..|++++.++...... ...+..||
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~-~~~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSS-TSRYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC----------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccc-hhHHhccC
Confidence 2469999999999999998766532 33445785
No 128
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=98.98 E-value=4.9e-10 Score=110.97 Aligned_cols=98 Identities=24% Similarity=0.434 Sum_probs=78.9
Q ss_pred CCCCcchhhccccC---CCCceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECC
Q 000950 89 GSRIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 164 (1211)
Q Consensus 89 ~~~~pW~~L~s~~~---~~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng 164 (1211)
+...||++|+-... .-..+.|....++|||...||+.|.|+.+|..||+|.... |. .+|+|. ++||| +|||
T Consensus 7 g~~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~--~~--~~l~Dl~S~nGt-~vNg 81 (128)
T 1r21_A 7 GGMWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE--QE--AILHNFSSTNPT-QVNG 81 (128)
T ss_dssp --CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS--SC--EEECCCCSSSCC-EETT
T ss_pred CCCCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC--CE--EEEEECCCCCCE-EECC
Confidence 45567888886542 2336788889999999999999999999999999999853 33 889999 57999 8999
Q ss_pred eeeCCCceEEeeCCCEEEEccCCceeeEeecc
Q 000950 165 NVHPKDSQVVLRGGDELVFSPSGKHSYIFQQL 196 (1211)
Q Consensus 165 ~~~~k~~~~~L~~Gdei~f~~~~~~ayifq~l 196 (1211)
+.+.+ .+.|+.||+|.|+ ...+.|...
T Consensus 82 ~~i~~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 82 SVIDE--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp EECSS--CEECCTTEEEECS---SCEEEEEEC
T ss_pred EECCC--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 99985 6899999999997 356777654
No 129
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.95 E-value=7.6e-10 Score=102.58 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=70.9
Q ss_pred ccCCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCC
Q 000950 1075 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPL 1154 (1211)
Q Consensus 1075 ~v~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~ 1154 (1211)
.-.+|+.++|.+||+.++++..+..++|+..||..|+||||+||.+||++|++.++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 44689999999999999999888889999999999999999999999999999998862
Q ss_pred CCccccccccHHHHHHHHHHhccC
Q 000950 1155 YSSVDVRPLKMDDFKYAHEQVCAS 1178 (1211)
Q Consensus 1155 ~~~~~~r~Lt~EDF~~Aleqv~pS 1178 (1211)
...|+++||..|+++++|.
T Consensus 66 -----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----CSEECHHHHHHHHHHHHCC
T ss_pred -----CCCCCHHHHHHHHHHHccC
Confidence 2579999999999998874
No 130
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=98.35 Aligned_cols=75 Identities=27% Similarity=0.459 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCC
Q 000950 1077 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYS 1156 (1211)
Q Consensus 1077 ~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~ 1156 (1211)
++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~------------------------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 58999999999999999988888999999999999999999999999999998886
Q ss_pred ccccccccHHHHHHHHHHhcc
Q 000950 1157 SVDVRPLKMDDFKYAHEQVCA 1177 (1211)
Q Consensus 1157 ~~~~r~Lt~EDF~~Aleqv~p 1177 (1211)
....|+++||..|++++..
T Consensus 57 --~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --TCSEECHHHHHHHHHHHHC
T ss_pred --CCCCCCHHHHHHHHHHHHh
Confidence 1257999999999998764
No 131
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=98.94 E-value=2.5e-09 Score=108.19 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred CceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEEE
Q 000950 105 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 183 (1211)
Q Consensus 105 p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~f 183 (1211)
..+.|....++|||...||+.|.|+.+|..||+|... +|. .+|+|. ++||| +|||+++. .+.|+.||+|.|
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EGE--FEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TTE--EEEEESCCSSCC-EETTEECS---EEECCTTEEEEE
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CCE--EEEEECCCcCCe-EECCEEcc---eEECCCCCEEEE
Confidence 3567777899999999999999999999999999984 443 889998 68999 89999998 589999999999
Q ss_pred ccCCceeeEeeccC
Q 000950 184 SPSGKHSYIFQQLS 197 (1211)
Q Consensus 184 ~~~~~~ayifq~l~ 197 (1211)
+. ..+.|+.-+
T Consensus 131 G~---~~l~f~~~~ 141 (143)
T 2kb3_A 131 GK---FRLVFLAGP 141 (143)
T ss_dssp TT---EEEEEEECC
T ss_pred CC---EEEEEEeCC
Confidence 64 566776543
No 132
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.92 E-value=1.9e-09 Score=108.34 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=67.4
Q ss_pred eEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCC--------CceEEeeCCCEEEE
Q 000950 113 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPK--------DSQVVLRGGDELVF 183 (1211)
Q Consensus 113 ~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k--------~~~~~L~~Gdei~f 183 (1211)
.++|||...||+.|.|+.+|..||+|.....++. .+|+|. |+||| +|||+++.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFK--WELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTTTE--EEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCE--EEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 7999999999999999999999999997754433 789999 68999 899999995 78899999999999
Q ss_pred ccCCceeeEeeccC
Q 000950 184 SPSGKHSYIFQQLS 197 (1211)
Q Consensus 184 ~~~~~~ayifq~l~ 197 (1211)
+.. .++|..+.
T Consensus 110 G~~---~~~~~~~~ 120 (139)
T 1mzk_A 110 GTT---TKVYVRIS 120 (139)
T ss_dssp SSS---CEEEEEEE
T ss_pred CCE---EEEEEEcC
Confidence 764 45665543
No 133
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=98.92 E-value=1.3e-08 Score=105.04 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=69.3
Q ss_pred CceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEEE
Q 000950 105 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 183 (1211)
Q Consensus 105 p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~f 183 (1211)
..+.|....++|||...||+.|.|..+|..||+|... +|. .+|+|. |+||| +|||+++. .+.|+.||+|.|
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NNE--FNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TTE--EEEECCCCSSCE-EETTBCCS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEEEE
Confidence 4566777899999999999999999999999999985 343 789999 68999 89999997 589999999999
Q ss_pred ccCCceeeEeeccC
Q 000950 184 SPSGKHSYIFQQLS 197 (1211)
Q Consensus 184 ~~~~~~ayifq~l~ 197 (1211)
+. .-+.|+.-+
T Consensus 140 G~---~~l~f~~~~ 150 (162)
T 2kfu_A 140 GK---FRLVFLTGP 150 (162)
T ss_dssp TT---EEEEEECSC
T ss_pred CC---EEEEEEeCC
Confidence 65 566776433
No 134
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=98.92 E-value=5e-10 Score=112.65 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=71.2
Q ss_pred ceeEec-ceEEEecccc-cceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEE
Q 000950 106 HLSMTG-AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 182 (1211)
Q Consensus 106 ~~~i~~-~~~tvG~~~~-c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~ 182 (1211)
.+.|.. ..++|||... ||+.|.|+.+|..||+|......+. .+|+|. |+||| +|||+++.++..+.|+.||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 455665 3599999998 9999999999999999997643344 789996 88999 8999999999999999999999
Q ss_pred EccCCceeeEee
Q 000950 183 FSPSGKHSYIFQ 194 (1211)
Q Consensus 183 f~~~~~~ayifq 194 (1211)
|+.... .|+++
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 35554
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.89 E-value=5.1e-09 Score=115.48 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=53.3
Q ss_pred hHHH--HHHHHhhhcchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 774 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 774 ALLR--Rferq~e~~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
+++| ||++.+++++|+...|.+|++.|.. ...+ +++++..+|..+.||+++||+.+|..|+..+..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666 7777788888888888888877642 2344 5677899999999999999999999999888753
No 136
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=98.84 E-value=7.6e-09 Score=109.97 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=70.5
Q ss_pred ceeEe-cceEEEeccc---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeC
Q 000950 106 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 168 (1211)
Q Consensus 106 ~~~i~-~~~~tvG~~~---------------~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~ 168 (1211)
.+.|. .+.|+|||.. .||+.|.++.+|..||.|.....+|....+|+|. |+||| +|||.++.
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI~ 174 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 174 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEECC
Confidence 56774 4899999984 4999999999999999998766555555788887 88999 89999999
Q ss_pred CCceEEeeCCCEEEEccCC
Q 000950 169 KDSQVVLRGGDELVFSPSG 187 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~ 187 (1211)
++..+.|+.||+|.|+.+.
T Consensus 175 ~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 175 GARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp BTSCEECCTTCEEESSSSG
T ss_pred CCceeECCCCCEEEECCCC
Confidence 9999999999999999875
No 137
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.83 E-value=4.2e-09 Score=121.67 Aligned_cols=198 Identities=22% Similarity=0.263 Sum_probs=116.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccccc----
Q 000950 910 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK---- 983 (1211)
Q Consensus 910 dI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~--~fi~I~~seL~s~---- 983 (1211)
.++|.......+.+.+.. ... ....+||+|++||||+++|+++....+. .|+.+||+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~-------~a~-----~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPK-------IAK-----SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHH-------HHT-----SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhh-------hhc-----cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 456666666666555432 011 1235999999999999999999988743 3999999875322
Q ss_pred -cccchH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEe
Q 000950 984 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1055 (1211)
Q Consensus 984 -~~G~~e-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaT 1055 (1211)
.||... ......|+.|.. ++||||||+.| +...|..+.+++++-....-|-.......+.+|++
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 222211 011235666644 89999999998 44556666666654432222222222346889999
Q ss_pred cCCC-------CCCcHHHHhccCcccccCCCCHHHH----HHHHHHHHhhcc----cC-Cccc---HHHHHHHcCCCcHH
Q 000950 1056 TNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKEE----LA-SDVD---LEGIANMADGYSGS 1116 (1211)
Q Consensus 1056 TN~p-------~~Ld~aLlrRF~~~I~v~lPd~eeR----~eILk~lL~k~~----l~-~dvd---L~~LA~~T~GySga 1116 (1211)
||.. ..+.+.+..|+ ..+.+.+|...+| ..++++++.+.. .. ..+. ++.|....=.-+.+
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvr 348 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVR 348 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHH
Confidence 9853 24555677777 3566777776665 456666665421 11 1222 23333332122457
Q ss_pred HHHHHHHHHHhh
Q 000950 1117 DLKNLCVTAAHC 1128 (1211)
Q Consensus 1117 DL~~L~~~Aa~~ 1128 (1211)
+|+++++.|+..
T Consensus 349 eL~n~i~~~~~~ 360 (368)
T 3dzd_A 349 ELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777777776643
No 138
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.83 E-value=4.4e-09 Score=96.21 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 000950 1080 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVD 1159 (1211)
Q Consensus 1080 d~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~ 1159 (1211)
+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999888889999999999999999999999999999988762
Q ss_pred cccccHHHHHHHHHHhccCcc
Q 000950 1160 VRPLKMDDFKYAHEQVCASVS 1180 (1211)
Q Consensus 1160 ~r~Lt~EDF~~Aleqv~pS~s 1180 (1211)
...|+++||..|+++++|+.+
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999986
No 139
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=98.80 E-value=1e-08 Score=98.29 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=65.8
Q ss_pred ceeEec-ceEEEeccc-ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEE
Q 000950 106 HLSMTG-AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 182 (1211)
Q Consensus 106 ~~~i~~-~~~tvG~~~-~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~ 182 (1211)
.+.|.. ..|+|||.. .||+.|.|+.+|..||+|..... |. .+|++. |+||| +|||+++.+ .+.|+.||+|.
T Consensus 18 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~-~~--~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGND-NS--VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp EEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTT-SC--EEEEECSCSSCC-EETTEECSS--EEECCTTCCEE
T ss_pred EEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCC-Cc--EEEEECcCCCCe-EECCEECCC--CeECCCCCEEE
Confidence 466666 469999999 79999999999999999997532 33 788998 77899 899999988 57999999999
Q ss_pred EccCCceeeEee
Q 000950 183 FSPSGKHSYIFQ 194 (1211)
Q Consensus 183 f~~~~~~ayifq 194 (1211)
|+.. .+.|.
T Consensus 92 ~G~~---~~~~~ 100 (106)
T 3gqs_A 92 LGTT---LFLLV 100 (106)
T ss_dssp ETTE---EEEEE
T ss_pred ECCE---EEEEE
Confidence 9653 44554
No 140
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.80 E-value=1.5e-08 Score=103.75 Aligned_cols=94 Identities=23% Similarity=0.396 Sum_probs=73.5
Q ss_pred hcccc--CCCCceeE---ecceEEEeccc---ccceeecCCCCCccceEEEEeecCC-cceEEEEEecCcceEEECCeee
Q 000950 97 LISQC--SQNSHLSM---TGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNVH 167 (1211)
Q Consensus 97 L~s~~--~~~p~~~i---~~~~~tvG~~~---~c~~~l~d~~~s~~~Ckl~~~~~~g-~~~a~le~~~~~g~v~vng~~~ 167 (1211)
|+.++ ++-..+.+ .....+|||.. .||+.|.++.||..||.|.....++ ..+.+++..++||| +|||+.|
T Consensus 41 LvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~i 119 (154)
T 4ejq_A 41 LVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKKV 119 (154)
T ss_dssp EEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEEC
T ss_pred EEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEEc
Confidence 55444 33445444 45789999975 7999999999999999999876544 34677888899998 8999999
Q ss_pred CCCceEEeeCCCEEEEccCCceeeEeec
Q 000950 168 PKDSQVVLRGGDELVFSPSGKHSYIFQQ 195 (1211)
Q Consensus 168 ~k~~~~~L~~Gdei~f~~~~~~ayifq~ 195 (1211)
.+ .+.|+.||+|.|+. .|-|.|..
T Consensus 120 ~~--~~~L~~GD~I~~G~--~~~Frf~~ 143 (154)
T 4ejq_A 120 TE--PSILRSGNRIIMGK--SHVFRFNH 143 (154)
T ss_dssp CS--CEECCTTCEEEETT--TEEEEEEC
T ss_pred CC--ceECCCCCEEEECC--cEEEEEcC
Confidence 65 58999999999974 35678864
No 141
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=98.79 E-value=9e-09 Score=105.54 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=64.2
Q ss_pred CceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeCCCceEEeeCCCEEEE
Q 000950 105 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 183 (1211)
Q Consensus 105 p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~L~~Gdei~f 183 (1211)
-.+.|....++|||...||+.|.|+.+|..||+|.... +. .+|+|. ++||| +|||+++. .+.|+.||+|.|
T Consensus 78 ~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I~l 149 (157)
T 3oun_A 78 RTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIRL 149 (157)
T ss_dssp CEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEEE
T ss_pred eEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCe-EECCEECc---eEECCCCCEEEE
Confidence 36777888999999999999999999999999999753 33 889999 68999 89999996 589999999999
Q ss_pred cc
Q 000950 184 SP 185 (1211)
Q Consensus 184 ~~ 185 (1211)
+.
T Consensus 150 G~ 151 (157)
T 3oun_A 150 GH 151 (157)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 142
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.76 E-value=1.9e-08 Score=98.60 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=67.4
Q ss_pred eeEecceEEEec--ccccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeeeCCCceEEeeCCCEEEE
Q 000950 107 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 183 (1211)
Q Consensus 107 ~~i~~~~~tvG~--~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~-~~g~v~vng~~~~k~~~~~L~~Gdei~f 183 (1211)
+.|....++||| ...||+.|.|+.+|..||.|... +|. .+|++.+ +||| +|||+++.+ .+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt-~vNg~~i~~--~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAET-YVDGQRISE--TTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCE-EETSCBCSS--CEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCE-EECCEEcCC--CEECCCCCEEEE
Confidence 667778899996 47999999999999999999975 444 7899995 7888 899999984 589999999999
Q ss_pred ccCCceeeEeec
Q 000950 184 SPSGKHSYIFQQ 195 (1211)
Q Consensus 184 ~~~~~~ayifq~ 195 (1211)
+.. +.|.|..
T Consensus 104 G~~--~~~~f~~ 113 (120)
T 1wln_A 104 GTS--HVFKFVD 113 (120)
T ss_dssp TTT--EEEEEEC
T ss_pred CCc--eEEEEEC
Confidence 763 5677763
No 143
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=2e-08 Score=139.03 Aligned_cols=138 Identities=23% Similarity=0.381 Sum_probs=92.6
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEeccccccccccchHHHHHHHHHHH-H--------------hcCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVVF 1008 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAI-A~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A-~--------------k~~PsILf 1008 (1211)
+++||+||||||||++|+.+ +...+..++.++++...+ ...+...+... . ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 68999999999999999555 444478888888876432 12333444332 1 11236999
Q ss_pred EccchhhhcCCC-CCchHHHHHHHHHhhhhhccCCccc------CCccEEEEEecCCC-----CCCcHHHHhccCccccc
Q 000950 1009 VDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP-----FDLDEAVVRRLPRRLMV 1076 (1211)
Q Consensus 1009 IDEID~L~~~r~-s~~~~e~l~~il~~LL~~ldgl~~k------~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~v 1076 (1211)
||||+.-...+. .....+.++ +++. ..++... .-.++.+|||||++ ..++++++||| .++.+
T Consensus 1342 iDEinmp~~d~yg~q~~lelLR----q~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i 1415 (2695)
T 4akg_A 1342 CDEINLPKLDKYGSQNVVLFLR----QLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYL 1415 (2695)
T ss_dssp EETTTCSCCCSSSCCHHHHHHH----HHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEEC
T ss_pred ecccccccccccCchhHHHHHH----HHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEe
Confidence 999985322221 112233333 3332 1222111 11468999999998 48999999999 88999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 000950 1077 NLPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1077 ~lPd~eeR~eILk~lL~k 1094 (1211)
+.|+.+++..|+..++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998865
No 144
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.74 E-value=2.7e-08 Score=115.70 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=79.7
Q ss_pred CCCcchhhccccCCCCceeEecceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeeeC
Q 000950 90 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 168 (1211)
Q Consensus 90 ~~~pW~~L~s~~~~~p~~~i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~-~~~g~v~vng~~~~ 168 (1211)
...||..|+... .-..+.|....+||||+..||+.|+|+.+|..||+|... +|. .+|+|. |+||| +|||+++.
T Consensus 285 ~~~~~~~l~~~~-~g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~ 358 (388)
T 2ff4_A 285 GQQAVAYLHDIA-SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGV-HVQHERIR 358 (388)
T ss_dssp SSBCCCEEEETT-TCCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS
T ss_pred CCCCeEEEEECC-CCcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCe-EECCEECC
Confidence 457999998742 345788999999999999999999999999999999974 333 789996 78999 89999995
Q ss_pred CCceEEeeCCCEEEEccCCceeeEeec
Q 000950 169 KDSQVVLRGGDELVFSPSGKHSYIFQQ 195 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~~~ayifq~ 195 (1211)
..+.|+.||+|.|+. ..+.|+.
T Consensus 359 --~~~~L~~gd~i~~G~---~~~~~~~ 380 (388)
T 2ff4_A 359 --SAVTLNDGDHIRICD---HEFTFQI 380 (388)
T ss_dssp --SEEEECTTCEEEETT---EEEEEEC
T ss_pred --CceECCCCCEEEECC---EEEEEEe
Confidence 479999999999975 5667764
No 145
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.69 E-value=8e-08 Score=94.96 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCCCCcchhhccccCCCCceeEe--cceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECC
Q 000950 87 KVGSRIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNG 164 (1211)
Q Consensus 87 ~~~~~~pW~~L~s~~~~~p~~~i~--~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng 164 (1211)
+.....|.=..|.-.++...+.++ ....+|||...||+.|.|+.+|..||.|...+ +|. ++|++.++||| +|||
T Consensus 21 ~~~~~~PhLvnLn~Dp~~s~~l~y~L~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g~--~~l~dl~~ngt-~VNG 96 (124)
T 3fm8_A 21 KVGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITS-EGQ--VMLTPQKNTRT-FVNG 96 (124)
T ss_dssp ------CEEEETTCCTTSSCCCEEECCSEEEEESSTTCSEECCSTTCCSSCEEEEECT-TSC--EEEEECTTCCE-EETT
T ss_pred eecCCccEEEEeCCCCccCceEEEECCCCeEECCCCCCCEEECCCCeecceEEEEECC-CCe--EEEEECCCCCE-EECC
Confidence 445566654444444555555444 35689999999999999999999999998643 344 78999999998 8999
Q ss_pred eeeCCCceEEeeCCCEEEEccCCceeeEe
Q 000950 165 NVHPKDSQVVLRGGDELVFSPSGKHSYIF 193 (1211)
Q Consensus 165 ~~~~k~~~~~L~~Gdei~f~~~~~~ayif 193 (1211)
+.|.+ .+.|+.||.|.|+.. +-|.|
T Consensus 97 ~~V~~--~~~L~~GD~I~lG~~--~~FrF 121 (124)
T 3fm8_A 97 SSVSS--PIQLHHGDRILWGNN--HFFRL 121 (124)
T ss_dssp EECCS--CEEECTTCEEEETTT--EEEEE
T ss_pred EEcCC--cEECCCCCEEEECCC--eEEEE
Confidence 99974 689999999999753 44555
No 146
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.67 E-value=1.4e-08 Score=113.58 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCCCeEEEEcChhhhhccCh----------hhHHHHHHHHhcC-------------CCCEEEEeeccCCCCccccCCCCC
Q 000950 662 KSSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLDSRKEKSHPGG 718 (1211)
Q Consensus 662 k~~P~Ilf~~die~~l~~~~----------~~~~~i~s~L~~L-------------~g~VvVIgs~~~~d~~k~k~~~~~ 718 (1211)
+..|.||||||+|++..+.. ++.+.+...|+.. ..+|+||+++|+++.
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~--------- 167 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST--------- 167 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC---------
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc---------
Confidence 46899999999999554211 3445666666522 247999999995443
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHH--HHHHHhhhcchhhhccchh
Q 000950 719 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 796 (1211)
Q Consensus 719 ~~l~~f~~~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLR--Rferq~e~~Lpd~~gR~~I 796 (1211)
+++ +++| ||++.++ +|+...|.+|
T Consensus 168 ---------------------ld~-------------------------------al~R~~R~d~~i~--~P~~~~r~~I 193 (293)
T 3t15_A 168 ---------------------LYA-------------------------------PLIRDGRMEKFYW--APTREDRIGV 193 (293)
T ss_dssp -----------------------C-------------------------------HHHHHHHEEEEEE--CCCHHHHHHH
T ss_pred ---------------------CCH-------------------------------HHhCCCCCceeEe--CcCHHHHHHH
Confidence 332 7777 7877775 6788889999
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHH
Q 000950 797 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEK 830 (1211)
Q Consensus 797 l~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~ 830 (1211)
++-|. ... ..+++.++..+.+|++++|+-
T Consensus 194 l~~~~--~~~---~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 194 CTGIF--RTD---NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHH--GGG---CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHhc--cCC---CCCHHHHHHHhCCCCcccHHH
Confidence 88553 222 345777888889999988863
No 147
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.62 E-value=1.3e-07 Score=88.99 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCceeEec-ceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCCCceEEeeCCCE
Q 000950 104 NSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 180 (1211)
Q Consensus 104 ~p~~~i~~-~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k~~~~~L~~Gde 180 (1211)
.|.+.+.. ..|+|||..+|+|.|.|+++|-.|+.|.+.++| .++- .++||+|||||+++ ..+.|..||-
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVRL-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEEE-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEEE-EeccCcEEECCEEe---eeEEccCCcc
Confidence 35555544 789999999999999999999999999988766 3342 39999999999999 4799999998
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.61 E-value=4.4e-08 Score=100.67 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCcccccCc----HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 000950 905 GVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 976 (1211)
Q Consensus 905 ~~sfddI~Gl----e~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~ 976 (1211)
..+|+++.+. ..+.+.+++++.. .. ..+..+++|+||+|+|||+|+++++..+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578887653 3344444444431 11 1224679999999999999999999877 66777777
Q ss_pred ccccccccccchHH-HHHHHHHHHHhcCCcEEEEccchhh
Q 000950 977 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 977 ~seL~s~~~G~~e~-~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
+.++...+...... ....++.. -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 76654332111000 00011111 225789999999743
No 149
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.60 E-value=1.7e-07 Score=94.88 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1019 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1019 (1211)
+...++|+||+|+|||+|+++++..+ |..++.++..++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 34579999999999999999999887 777888988776543 112357899999998762
Q ss_pred CCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc--HHHHhccCcccccC
Q 000950 1020 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1020 ~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~~I~v~ 1077 (1211)
...++.+..+++.+... ...++||++...+..+. +.+.+|+..-..+.
T Consensus 97 --~~~~~~l~~li~~~~~~--------g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 97 --NEEQALLFSIFNRFRNS--------GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp --SHHHHHHHHHHHHHHHH--------TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred --hHHHHHHHHHHHHHHHc--------CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 22244444454443321 12224554443554333 88888986544443
No 150
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.58 E-value=1.4e-06 Score=97.28 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=112.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 981 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~----- 981 (1211)
....++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------------~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------------A---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------------S---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CHHHhcChHHHHHHHHH-hc--------------C---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 44578899888888877 53 1 3799999999999999999999987778888875420
Q ss_pred c--cccc---------------------------------c------hHHHHHHHHHHHHhc--CCcEEEEccchhhhcC
Q 000950 982 S--KWFG---------------------------------E------GEKYVKAVFSLASKI--APSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 982 s--~~~G---------------------------------~------~e~~I~~lF~~A~k~--~PsILfIDEID~L~~~ 1018 (1211)
+ .... . ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 0000 0 011233444444433 3889999999987431
Q ss_pred CCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc---------HHHHhccCcccccCCCCHHHHHHHHH
Q 000950 1019 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIR 1089 (1211)
Q Consensus 1019 r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRF~~~I~v~lPd~eeR~eILk 1089 (1211)
. .......++ .+.... .++.+|.|++....+. ..+..|+...+.+.+.+.++..+++.
T Consensus 153 ~-~~~~~~~l~----~~~~~~--------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-GVNLLPALA----YAYDNL--------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-TCCCHHHHH----HHHHHC--------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-chhHHHHHH----HHHHcC--------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 1 111122222 222111 2456666665432111 11233555678999999999999999
Q ss_pred HHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1090 VILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1090 ~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
..+.......+ +...+...+.|+.. -+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 87764433322 23788889988644 45555543
No 151
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.58 E-value=1.6e-07 Score=111.06 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEec--c---cccccc
Q 000950 911 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINISM--S---SITSKW 984 (1211)
Q Consensus 911 I~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAI-A~elg~~fi~I~~--s---eL~s~~ 984 (1211)
|.|++.++..|.-.+.-...+ .+..-+|||.|+||| ||+||+++ ++.+.. .+.... + .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEE
Confidence 678899888776655421111 111236999999999 99999999 655433 222211 1 111110
Q ss_pred ccc-hHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC---
Q 000950 985 FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--- 1060 (1211)
Q Consensus 985 ~G~-~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--- 1060 (1211)
.+. .-..-.+.+..|.. +|+|||||+.+ ++..+..+.+.+++-...+.|. .-+.++.||||+|+..
T Consensus 284 r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd 353 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWP 353 (506)
T ss_dssp EESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--C
T ss_pred EcCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccC
Confidence 000 00001123445544 89999999987 5556777888888776666665 4457899999999864
Q ss_pred --------CCcHHHHhccCcc-cccCCCCHHH
Q 000950 1061 --------DLDEAVVRRLPRR-LMVNLPDAPN 1083 (1211)
Q Consensus 1061 --------~Ld~aLlrRF~~~-I~v~lPd~ee 1083 (1211)
.|++++++||+.. +.++.|+.++
T Consensus 354 ~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 354 SDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred CCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 7889999999753 4456666443
No 152
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.56 E-value=2.2e-07 Score=88.72 Aligned_cols=95 Identities=20% Similarity=0.284 Sum_probs=79.7
Q ss_pred chhhccccCCCCceeEec-ceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCCCce
Q 000950 94 WARLISQCSQNSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 172 (1211)
Q Consensus 94 W~~L~s~~~~~p~~~i~~-~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k~~~ 172 (1211)
=|-|.++...+|.|.|.. ..++|||+..|.+ .|...|-.||+|+-...+|- +.+-..|.|++ +|||+.+.|+..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g~--v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKGY--VKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCCE--EEEEECcCCCC-eECCEEcCCCCe
Confidence 378999998889888865 5688999998855 79999999999997765554 67889999999 699999999999
Q ss_pred EEeeCCCEEEEccCCceeeEee
Q 000950 173 VVLRGGDELVFSPSGKHSYIFQ 194 (1211)
Q Consensus 173 ~~L~~Gdei~f~~~~~~ayifq 194 (1211)
+.|+.||.|.+. +++|.|-++
T Consensus 79 ~~L~~GD~l~Ll-~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHMV-NELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEEE-TTEEEEEEE
T ss_pred EEeCCCCEEEEc-cCCceEEEE
Confidence 999999999874 566666543
No 153
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.55 E-value=1.7e-07 Score=90.51 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=80.2
Q ss_pred chhhccccCCCCceeEe--cceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCCCc
Q 000950 94 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 171 (1211)
Q Consensus 94 W~~L~s~~~~~p~~~i~--~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k~~ 171 (1211)
-|.|.++...+|.|.|. ....+|||+.. ..+.|...|-.||+|+-.-.+|. +.+-..|+|++ +|||+++.|+.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~--t~I~DkrcSR~hv~L~ad~~~~~--v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGPL--TQVTDRKCSRTQVELVADPETRT--VAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBTT--TTBCCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccceeeeEEEEEecCCCE--EEEEEcccCCc-EECCEEcCCCC
Confidence 47899999999999995 68999999984 45799999999999995544444 66789999998 69999999999
Q ss_pred eEEeeCCCEEEEccCCceeeEee
Q 000950 172 QVVLRGGDELVFSPSGKHSYIFQ 194 (1211)
Q Consensus 172 ~~~L~~Gdei~f~~~~~~ayifq 194 (1211)
.+.|++||.|.+ .+|+|.|-++
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEE
Confidence 999999999987 5678777665
No 154
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=1.5e-07 Score=98.11 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=47.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
.+++|+||+|||||+||+++++.+ +.+++.++++++........ ...+..++..... +.+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 689999999999999999999988 67888898877554322110 0011223333332 469999999764
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=3.2e-06 Score=94.29 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=112.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 981 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~----- 981 (1211)
.-..++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.++++.+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~-----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y-----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C-----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C-----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 345689999999999887641 1 4799999999999999999999886 6667664321
Q ss_pred -------c---ccc-------------------------cchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchHH
Q 000950 982 -------S---KWF-------------------------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 1026 (1211)
Q Consensus 982 -------s---~~~-------------------------G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~~e 1026 (1211)
. ..+ ......+..+...+....|.+|+|||++.+..... .....
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~ 150 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKE 150 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhh
Confidence 0 000 01112222232333333489999999998842100 00111
Q ss_pred HHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc---------HHHHhccCcccccCCCCHHHHHHHHHHHHhhccc
Q 000950 1027 AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 1097 (1211)
Q Consensus 1027 ~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l 1097 (1211)
....+..+.... .++.+|.|+.....+. ..+..|+...+.+.+.+.++-.+++...+.....
T Consensus 151 -~~~~L~~~~~~~--------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 151 -LLALFAYAYDSL--------PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp -HHHHHHHHHHHC--------TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHhc--------CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 122222222211 2456666654321111 1223355557889999999999999887765433
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 000950 1098 A-SDVDLEGIANMADGYSGSDLKNLCVT 1124 (1211)
Q Consensus 1098 ~-~dvdL~~LA~~T~GySgaDL~~L~~~ 1124 (1211)
. ++..+..+...+.|+. .-+..++..
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 2 3455778888898865 445555543
No 156
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.44 E-value=4.8e-08 Score=89.33 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCCCCCccccc
Q 000950 1082 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERALALAENRASPPLYSSVDVR 1161 (1211)
Q Consensus 1082 eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~a~ae~~~~~~~~~~~~~r 1161 (1211)
++|.+||+.++++..+..++|+..||..|+||||+||.++|++|++.++++. ..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------------------~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------------------RY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--------------------------CS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------cC
Confidence 4789999999999888889999999999999999999999999999988861 24
Q ss_pred cccHHHHHHHHHHhc-cCcc
Q 000950 1162 PLKMDDFKYAHEQVC-ASVS 1180 (1211)
Q Consensus 1162 ~Lt~EDF~~Aleqv~-pS~s 1180 (1211)
.|+++||..|++++. ++.+
T Consensus 55 ~i~~~df~~Al~~v~~~~~~ 74 (82)
T 2dzn_B 55 VILQSDLEEAYATQVKTDNT 74 (82)
T ss_dssp EECHHHHHHHHHTTCC----
T ss_pred CcCHHHHHHHHHHHHcCcCC
Confidence 699999999999985 4443
No 157
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.40 E-value=7.5e-07 Score=89.00 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=84.1
Q ss_pred CCcchhhccccCCCCceeEe--cceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeC
Q 000950 91 RIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 168 (1211)
Q Consensus 91 ~~pW~~L~s~~~~~p~~~i~--~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~ 168 (1211)
..+-|.|+++...+|.|.|. ...++|||+.- ..+.|...|-.||+|+-.-.+|- +.+=..|.|++ +|||+++.
T Consensus 6 ~~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPe--t~ItDkRcSR~qv~L~ad~~~g~--V~Vk~lG~NP~-~vng~~L~ 80 (143)
T 1yj5_C 6 SRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVHELK 80 (143)
T ss_dssp CCEEEEEECCTTSCCCEECCTTTCEEEECSBTT--TTBCCSSSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECC
T ss_pred cCCeEEEEecCCCCCcEEeccCCCCEEEcCCCc--cccccccccceeEEEEEecCCCe--EEEEEcccCCc-EECCEEec
Confidence 34679999999999999995 68999999984 56899999999999995544444 55778999999 69999999
Q ss_pred CCceEEeeCCCEEEEccCCceeeEeec
Q 000950 169 KDSQVVLRGGDELVFSPSGKHSYIFQQ 195 (1211)
Q Consensus 169 k~~~~~L~~Gdei~f~~~~~~ayifq~ 195 (1211)
|+..+.|++||.|.+ .+|+|.|-+.-
T Consensus 81 k~~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 81 PGLSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp TTCEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CCCEEEecCCCEEEE-ecCCceEEEEe
Confidence 999999999999987 57888887764
No 158
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=86.84 Aligned_cols=75 Identities=8% Similarity=-0.041 Sum_probs=60.2
Q ss_pred hcchhhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhH
Q 000950 785 RDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 864 (1211)
Q Consensus 785 ~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~ 864 (1211)
...||.++|.+||++|++.+... ++++++.||..|.||+||||+.||++|+..|+.+.. ..+..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~---------------~~I~~ 71 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQ 71 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC---------------SEECH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC---------------CCCCH
Confidence 46799999999999998633222 689999999999999999999999999999998641 23566
Q ss_pred HHHHhhhhhhh
Q 000950 865 NILQGIQSESK 875 (1211)
Q Consensus 865 ~df~~a~~eik 875 (1211)
.+|..++..++
T Consensus 72 ~df~~Al~~v~ 82 (86)
T 2krk_A 72 EDFEMAVAKVM 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777765544
No 159
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.32 E-value=4.8e-07 Score=88.38 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=82.5
Q ss_pred CcchhhccccCCCCceeEe--cceEEEecccccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCC
Q 000950 92 IPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 169 (1211)
Q Consensus 92 ~pW~~L~s~~~~~p~~~i~--~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k 169 (1211)
..-|.|.+++..+|.|.|. ...++|||+.. ..+.|...|-.||+|+-.-.+|- +.+-..|.|++ +|||+++.|
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~--t~I~DkrcSR~qv~L~ad~~~~~--v~vk~lG~NP~-~vng~~l~k 88 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVQELKP 88 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBTT--TTBCCTTSCTTSEEEEEETTTTE--EEEEECSSSCC-BSSSSBCCT
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccccceeEEEEEecCCCE--EEEEEcccCCc-EECCEEecC
Confidence 5669999999999999995 68999999984 45799999999999995544444 56678999998 699999999
Q ss_pred CceEEeeCCCEEEEccCCceeeEee
Q 000950 170 DSQVVLRGGDELVFSPSGKHSYIFQ 194 (1211)
Q Consensus 170 ~~~~~L~~Gdei~f~~~~~~ayifq 194 (1211)
+..+.|++||.|.+ .+++|.|-++
T Consensus 89 ~~~~~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 89 GLSGSLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp TCEEEEETTCCCBC-BTTBSCCEEE
T ss_pred CCEEEecCCCEEEE-ecCCeEEEEE
Confidence 99999999999977 5678887666
No 160
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.26 E-value=4.2e-07 Score=103.21 Aligned_cols=112 Identities=15% Similarity=0.238 Sum_probs=66.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1022 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~--fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~ 1022 (1211)
..+||+||||+|||+||.++|.+.+.+ |+.+...+..+.+....+..+..++..+.+.. +||||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 458999999999999999999876544 55553233333333445666666777666655 99999999985433210
Q ss_pred ---c-hHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHH
Q 000950 1023 ---G-EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1065 (1211)
Q Consensus 1023 ---~-~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1065 (1211)
+ ....+++++..|...... .++.+|+++|. ...+++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSSS
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccchh
Confidence 0 122344444444433221 34678888884 444433
No 161
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.24 E-value=3.1e-06 Score=117.73 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
.++++.||+|||||.+++++|+.+|.+++.++|.+-+. ...+..+|..+.+.. +.+++|||+++ .+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc-----ChHH
Confidence 57899999999999999999999999999999987433 245577777776654 89999999987 2222
Q ss_pred HHHHHHHHHhhhhh---------ccCCcccCCccEEEEEecCC----CCCCcHHHHhccCcccccCCCCHHHHHHHHH
Q 000950 1025 HEAMRKMKNEFMVN---------WDGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1089 (1211)
Q Consensus 1025 ~e~l~~il~~LL~~---------ldgl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk 1089 (1211)
...+...+..+... ..|....-+....|++|.|+ ...|++++++|| +.+.+..|+.+...+|+-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 23332222222221 12212222456778888884 457999999999 789999999988877753
No 162
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.24 E-value=1e-06 Score=93.54 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=78.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEeccccccccc----------cchHH--HHHHHHHHH--Hh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE--------AG-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 1001 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e--------lg-~~fi~I~~seL~s~~~----------G~~e~--~I~~lF~~A--~k 1001 (1211)
.-.|++|+||+|||++|.+++.. .| .+++..++.++....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46899999999999999887544 34 6666777666543222 11000 012223221 22
Q ss_pred cCCcEEEEccchhhhcCCCC-CchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCC
Q 000950 1002 IAPSVVFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPD 1080 (1211)
Q Consensus 1002 ~~PsILfIDEID~L~~~r~s-~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd 1080 (1211)
...+||+|||++.+++.+.. .... +++..|.. .....+-||.+|+.+..|+..+++|+...+++..|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~----rll~~l~~-------~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP----ENVQWLNT-------HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC----HHHHGGGG-------TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhH----HHHHHHHh-------cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 34689999999999865521 1111 22222221 122456677778789999999999999888888765
Q ss_pred HH
Q 000950 1081 AP 1082 (1211)
Q Consensus 1081 ~e 1082 (1211)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 163
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.19 E-value=8.5e-07 Score=80.08 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=49.2
Q ss_pred cchhhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 786 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 786 ~Lpd~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
|+||.++|.+|+++|+.. .++ .+++++.||..|.||+|+||+.+|++|+..++.+
T Consensus 1 plPd~~~R~~Il~~~l~~--~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK--MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT--SEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999752 233 6889999999999999999999999999999986
No 164
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.15 E-value=1.7e-06 Score=97.64 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=46.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccch-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~~~G~~-e~~I~~lF~~A~k~~PsILfIDEID~L 1015 (1211)
..+++|+||||||||+||.+||+++ +.+++.++++++........ ......++.... ...+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 47888888877654332211 111112222222 3469999999654
No 165
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.13 E-value=7.4e-06 Score=86.14 Aligned_cols=94 Identities=23% Similarity=0.389 Sum_probs=70.9
Q ss_pred hcccc--CCCCceeEe---cceEEEeccc---ccceeecCCCCCccceEEEEeecCC-cceEEEEEecCcceEEECCeee
Q 000950 97 LISQC--SQNSHLSMT---GAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNVH 167 (1211)
Q Consensus 97 L~s~~--~~~p~~~i~---~~~~tvG~~~---~c~~~l~d~~~s~~~Ckl~~~~~~g-~~~a~le~~~~~g~v~vng~~~ 167 (1211)
|+.++ ++-..+.+| ...-+|||.. .||+.|.++.|+..||.|.....++ ..++.|+...+.+ ++|||+.|
T Consensus 71 LvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~-t~VNG~~I 149 (184)
T 4egx_A 71 LVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGAD-TYVNGKKV 149 (184)
T ss_dssp EEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCC-EEETTEEC
T ss_pred EEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCe-EEEcCEEc
Confidence 44444 334444444 3578999854 6999999999999999999775554 4567788776554 59999999
Q ss_pred CCCceEEeeCCCEEEEccCCceeeEeec
Q 000950 168 PKDSQVVLRGGDELVFSPSGKHSYIFQQ 195 (1211)
Q Consensus 168 ~k~~~~~L~~Gdei~f~~~~~~ayifq~ 195 (1211)
.. .+.|++||.|+|+. .|-|.|..
T Consensus 150 ~~--~~~L~~GDrI~lG~--~h~Frfn~ 173 (184)
T 4egx_A 150 TE--PSILRSGNRIIMGK--SHVFRFNH 173 (184)
T ss_dssp CS--CEECCTTCEEEETT--TEEEEEEC
T ss_pred cc--cEEcCCCCEEEECC--CCEEEECC
Confidence 75 58999999999984 47788864
No 166
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.11 E-value=2e-06 Score=79.73 Aligned_cols=70 Identities=13% Similarity=0.018 Sum_probs=56.6
Q ss_pred hhhccchhhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHH
Q 000950 789 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 867 (1211)
Q Consensus 789 d~~gR~~Il~IhT~l~~~~l-~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df 867 (1211)
|.++|.+|++||++.. ++ ++++++.||..|.||+|+||+.+|++|+..++.+... .+...+|
T Consensus 2 d~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM--SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTS--CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS---------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCCC--CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc---------------cCCHHHH
Confidence 5678999999998632 33 6899999999999999999999999999999987432 2566778
Q ss_pred Hhhhhhhh
Q 000950 868 QGIQSESK 875 (1211)
Q Consensus 868 ~~a~~eik 875 (1211)
..++..+.
T Consensus 65 ~~Al~~v~ 72 (88)
T 3vlf_B 65 LKAVDKVI 72 (88)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77765554
No 167
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.01 E-value=3.6e-06 Score=76.78 Aligned_cols=72 Identities=10% Similarity=0.000 Sum_probs=56.7
Q ss_pred hhhccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHH
Q 000950 789 TLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 868 (1211)
Q Consensus 789 d~~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~ 868 (1211)
|.++|.+|+++|+...... ++++++.||..|.||+|+||+.+|++|+..++.+.. ..+...+|.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~~df~ 65 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENR---------------YIVLAKDFE 65 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC---------------SSBCHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHH
Confidence 4678999999997633221 688999999999999999999999999999987542 235567777
Q ss_pred hhhhhhhh
Q 000950 869 GIQSESKS 876 (1211)
Q Consensus 869 ~a~~eik~ 876 (1211)
.+...++|
T Consensus 66 ~Al~~~~p 73 (83)
T 3aji_B 66 KAYKTVIK 73 (83)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHcc
Confidence 77666654
No 168
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.87 E-value=1.6e-05 Score=85.06 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
+++||+||||||||++|.++|+.+...++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999998655443
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.85 E-value=5.1e-05 Score=83.93 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=75.1
Q ss_pred CCeEEEEcChhhhhc------cChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCC
Q 000950 664 SPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 737 (1211)
Q Consensus 664 ~P~Ilf~~die~~l~------~~~~~~~~i~s~L~~L~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~p 737 (1211)
.+-||||||++.++. ...+..+.|...|+....+++||++++..+. +.++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------------------~~~~----- 185 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------------------ENFF----- 185 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------------------HHHH-----
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------------------HHHH-----
Confidence 356999999999543 2567777888888888889999999883110 0000
Q ss_pred CCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchhhHHHHHhhhCCCCcccchhhh
Q 000950 738 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLC 817 (1211)
Q Consensus 738 d~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA 817 (1211)
.....|..+|+..|.+++|+++.+...|...+..- ...++...++.++
T Consensus 186 --------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~------------------~~~~~~~~~~~l~ 233 (309)
T 3syl_A 186 --------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ------------------NYQMTPEAETALR 233 (309)
T ss_dssp --------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT------------------TCEECHHHHHHHH
T ss_pred --------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc------------------CCCCCHHHHHHHH
Confidence 01134556777888888888887766554433210 0011222222222
Q ss_pred cc------cCCCC-HHHHHHHHhhhhhhHhhhcc
Q 000950 818 IK------DQTLT-TEGVEKIVGWALSHHFMHCS 844 (1211)
Q Consensus 818 ~~------tkg~s-gadI~~Lv~~A~s~Al~r~~ 844 (1211)
.. +..++ +.++..++..|...+..+..
T Consensus 234 ~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 234 AYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 22 23333 77888888888877666543
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.80 E-value=3.9e-05 Score=107.71 Aligned_cols=140 Identities=22% Similarity=0.339 Sum_probs=88.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccccccchHHHHHHHHHHH----Hh------------cCCcEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVV 1007 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~seL~s~~~G~~e~~I~~lF~~A----~k------------~~PsIL 1007 (1211)
++|||+||+|||||++++.++..+ +.+++.++++.-.+ ...+.+.++.. .+ .+..||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998876655444 66788888866332 22333444321 10 112499
Q ss_pred EEccchhhhcCCCCCc---hHHHHHHHHHhhhhhcc--CCcccCCccEEEEEecCCC-----CCCcHHHHhccCcccccC
Q 000950 1008 FVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMVN 1077 (1211)
Q Consensus 1008 fIDEID~L~~~r~s~~---~~e~l~~il~~LL~~ld--gl~~k~~~~VlVIaTTN~p-----~~Ld~aLlrRF~~~I~v~ 1077 (1211)
||||++. +....-+ ..+.++.+++.-- .++ ......-.++.+|||+|++ ..++++++||| .++.++
T Consensus 1379 FiDDiNm--p~~D~yGtQ~~ielLrqlld~~g-~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~ 1454 (3245)
T 3vkg_A 1379 FCDEINL--PSTDKYGTQRVITFIRQMVEKGG-FWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVD 1454 (3245)
T ss_dssp EETTTTC--CCCCTTSCCHHHHHHHHHHHHSE-EEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECC
T ss_pred EecccCC--CCccccccccHHHHHHHHHHcCC-eEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeC
Confidence 9999984 2222212 2333443333210 011 1111112568899999987 46999999999 579999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 000950 1078 LPDAPNREKIIRVILAK 1094 (1211)
Q Consensus 1078 lPd~eeR~eILk~lL~k 1094 (1211)
.|+.++...|+..++..
T Consensus 1455 ~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1455 FPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998887654
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.75 E-value=3.9e-05 Score=104.00 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----ccc------------ccchHHHHHHHHHHHHh
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKW------------FGEGEKYVKAVFSLASK 1001 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~----s~~------------~G~~e~~I~~lF~~A~k 1001 (1211)
..++.+++|+||||||||+||.+++.++ |..+..++..+.. ... ....++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4456789999999999999999998776 6677777766432 111 22456778888889999
Q ss_pred cCCcEEEEccchhhhcCC---CCCc--hHHHHHHHHHhhhhhccCCcccCCccEEEEEec
Q 000950 1002 IAPSVVFVDEVDSMLGRR---ENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1056 (1211)
Q Consensus 1002 ~~PsILfIDEID~L~~~r---~s~~--~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTT 1056 (1211)
.+|++||||+++.+++.. +..+ ......+++.+++..+.+.... ..++||++-
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~--~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT--TTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh--CCcEEEEEc
Confidence 999999999999887532 1000 0001234455555555554332 445655553
No 172
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.74 E-value=0.00012 Score=102.81 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=90.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1024 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~~ 1024 (1211)
.|..+.||+|||||.+++.+|+.+|.+++.++|.+-+. ...+..+|.-+.+. .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 46789999999999999999999999999999987432 23556677666654 478899999987 2111
Q ss_pred HHHHHHHHHhhhh---------hcc-CCcccCCccEEEEEecCC----CCCCcHHHHhccCcccccCCCCHHHHHHHH
Q 000950 1025 HEAMRKMKNEFMV---------NWD-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 1088 (1211)
Q Consensus 1025 ~e~l~~il~~LL~---------~ld-gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eIL 1088 (1211)
.......+..+.. .+. |-.-.-+..+.|++|.|+ ...|++.+..|| +.+.+..||.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 1111111111111 111 211222356788888884 468999999999 77999999998777765
No 173
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.70 E-value=5.6e-05 Score=83.81 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=66.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1023 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~~r~s~~ 1023 (1211)
.++|+|+||||||||++|.+||+.++. +-.++... ..+ .|.. .....|+++||.... ..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~------~d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT------AK 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE------TT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch------hH
Confidence 467999999999999999999998654 22223211 000 1111 122246666666543 12
Q ss_pred hHHHHHHHHHhhhhhccCCcc--cCCccEEEEEecCC-C----------CCCcHHHHhccCcccccC--------CCCHH
Q 000950 1024 EHEAMRKMKNEFMVNWDGLRT--KDKERVLVLAATNR-P----------FDLDEAVVRRLPRRLMVN--------LPDAP 1082 (1211)
Q Consensus 1024 ~~e~l~~il~~LL~~ldgl~~--k~~~~VlVIaTTN~-p----------~~Ld~aLlrRF~~~I~v~--------lPd~e 1082 (1211)
..+.++.++.--...++.... ..-.+..+|.|||. + +...+.|.+|+ ..+.|. ..+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCCCCHH
Confidence 233445444211111211110 01134556667765 1 24557888875 344444 55677
Q ss_pred HHHHHHHHH
Q 000950 1083 NREKIIRVI 1091 (1211)
Q Consensus 1083 eR~eILk~l 1091 (1211)
+-..+|+..
T Consensus 242 ~~~~f~~w~ 250 (267)
T 1u0j_A 242 EVKDFFRWA 250 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777733
No 174
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.63 E-value=3.1e-05 Score=70.61 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=42.3
Q ss_pred hccchhhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCccccccCchhhhHHHHHhh
Q 000950 791 KGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 870 (1211)
Q Consensus 791 ~gR~~Il~IhT~l~~~~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r~~~~i~~~~kl~id~~sI~~~~~df~~a 870 (1211)
++|.+|+++|+..... -++++++.||..|.||+|+||+.+|++|+..++.+.. ..+...+|..+
T Consensus 1 ~~R~~Il~~~l~~~~~-~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---------------~~i~~~df~~A 64 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------YVILQSDLEEA 64 (82)
T ss_dssp -------------CEE-CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---------------SEECHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHHHH
Confidence 4789999999863221 2678999999999999999999999999999998632 13556677766
Q ss_pred hhhh
Q 000950 871 QSES 874 (1211)
Q Consensus 871 ~~ei 874 (1211)
...+
T Consensus 65 l~~v 68 (82)
T 2dzn_B 65 YATQ 68 (82)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6544
No 175
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.60 E-value=3.9e-05 Score=90.72 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=53.6
Q ss_pred hhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 000950 422 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 492 (1211)
Q Consensus 422 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~~g 492 (1211)
++.|..|..|.+-|+++..+....+ .....+.|||.||+| .-..+||||||+.++++++.+|.+.+..
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 8899999999988887765532211 112346799999999 6899999999999999999999877655
No 176
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.58 E-value=0.00016 Score=81.13 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=61.7
Q ss_pred ceeEecceEEEeccccc---ceeecCCCCCccceEEEEee-------cCCcceEEEEEe-cCcceEEECCeeeCCCceEE
Q 000950 106 HLSMTGAVFTVGHNRQC---DLYLKDPSISKNLCRLRRIE-------NGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVV 174 (1211)
Q Consensus 106 ~~~i~~~~~tvG~~~~c---~~~l~d~~~s~~~Ckl~~~~-------~~g~~~a~le~~-~~~g~v~vng~~~~k~~~~~ 174 (1211)
.+.+....|+|||...+ ++.+.|+++|-.|+.|+-.. ..+....+|+|. |+||| +|||.++. ++++.
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~ 92 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDS 92 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEE
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceee
Confidence 45566667999997653 35899999999999998542 122445789996 67799 89999995 55677
Q ss_pred ee-CCCEEEEccCCc
Q 000950 175 LR-GGDELVFSPSGK 188 (1211)
Q Consensus 175 L~-~Gdei~f~~~~~ 188 (1211)
|. .||+|.||....
T Consensus 93 L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF 107 (325)
T ss_dssp ECSSEEEEEETTCSS
T ss_pred ecCCCCEEEecCCcc
Confidence 75 699999998644
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.58 E-value=8.9e-05 Score=84.10 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhccCC--CCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCc
Q 000950 649 AINELFEVALNESKS--SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 726 (1211)
Q Consensus 649 ~~~~l~evl~sesk~--~P~Ilf~~die~~l~~~~~~~~~i~s~L~~L~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~ 726 (1211)
.++.....+....+. .|-||||||++. |. .+..+.+...++....++++|++..... ++.....
T Consensus 172 ~~~~~~~~~~~~g~~~~~~~vl~IDEi~~-l~--~~~~~~L~~~le~~~~~~~ii~t~~~~~-----------~i~~t~~ 237 (368)
T 3uk6_A 172 QINAKVAEWREEGKAEIIPGVLFIDEVHM-LD--IESFSFLNRALESDMAPVLIMATNRGIT-----------RIRGTSY 237 (368)
T ss_dssp HHHHHHHHHHHHTC---CBCEEEEESGGG-SB--HHHHHHHHHHTTCTTCCEEEEEESCSEE-----------ECBTSSC
T ss_pred HHHHHHHHhhhhccccccCceEEEhhccc-cC--hHHHHHHHHHhhCcCCCeeeeeccccee-----------eeeccCC
Confidence 444444443333332 388999999998 43 4566677788888777888887764100 0000000
Q ss_pred chhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHHHHhhhcchhhhccchhhHHHHHhhhC
Q 000950 727 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 806 (1211)
Q Consensus 727 ~~~~l~d~~~pd~~~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRferq~e~~Lpd~~gR~~Il~IhT~l~~~ 806 (1211)
+ .|+.++ ..|..+|.. |.+++|+.+.+...+...+. ....
T Consensus 238 ~--------~~~~l~-------------~~l~sR~~~-i~~~~~~~~e~~~il~~~~~------------------~~~~ 277 (368)
T 3uk6_A 238 Q--------SPHGIP-------------IDLLDRLLI-VSTTPYSEKDTKQILRIRCE------------------EEDV 277 (368)
T ss_dssp E--------EETTCC-------------HHHHTTEEE-EEECCCCHHHHHHHHHHHHH------------------HTTC
T ss_pred C--------CcccCC-------------HHHHhhccE-EEecCCCHHHHHHHHHHHHH------------------HcCC
Confidence 0 112222 344555533 67888877776554443222 1122
Q ss_pred CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 000950 807 GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 842 (1211)
Q Consensus 807 ~l~d~dL~~LA~~tkg~sgadI~~Lv~~A~s~Al~r 842 (1211)
.+++..++.|+..+.+.+..++..+|..|...|..+
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 345666777887777677889999999998888653
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.51 E-value=0.00014 Score=79.48 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 450 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 450 ~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
...+.|||.||+| ....+||+|+|+..+.+++.++.
T Consensus 62 ~~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeC
Confidence 3456899999999 78999999999998888777764
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.50 E-value=0.00045 Score=71.70 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
.+.|.||+|+|||||++.|+..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999998865443
No 180
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.47 E-value=0.00097 Score=75.37 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=94.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEeccccccccccchHHHHHHHHHHHHh----cCCcEEEEccchh-h
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDS-M 1015 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~-~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k----~~PsILfIDEID~-L 1015 (1211)
+.+||+||+|.||++.++++++.+ ++ ++..+... + +..++.++..+.. ....||+|||+|. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 579999999999999999998865 33 22222111 1 1123445544432 2357999999987 6
Q ss_pred hcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCC-----CCCCcHHHHhccCcccccCCCCHHHHHHHHHH
Q 000950 1016 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1090 (1211)
Q Consensus 1016 ~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~ 1090 (1211)
+..... .|+..+...+ ...++|+++++. ...+.+++.+|+ .++.+..++..+....++.
T Consensus 90 -----~~~~~~-------aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 90 -----NAAINE-------QLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp -----CTTHHH-------HHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHH
T ss_pred -----ChHHHH-------HHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHH
Confidence 212222 2333333221 134455555432 245667888887 6789999999999999999
Q ss_pred HHhhcccC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 000950 1091 ILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1125 (1211)
Q Consensus 1091 lL~k~~l~-~dvdL~~LA~~T~GySgaDL~~L~~~A 1125 (1211)
.+...++. ++..+..|+..+.| +.+++.+.++..
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 98876654 34456677777765 344444444433
No 181
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.46 E-value=0.00022 Score=70.04 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=63.4
Q ss_pred CCCceeEecceEEEeccc-ccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeeeCCCceEEeeCCCEE
Q 000950 103 QNSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 181 (1211)
Q Consensus 103 ~~p~~~i~~~~~tvG~~~-~c~~~l~d~~~s~~~Ckl~~~~~~g~~~a~le~~~~~g~v~vng~~~~k~~~~~L~~Gdei 181 (1211)
+--.+.+....++||+.. .|||.|.|+.+|..||.|...+++ .+|. -+.||+ +|||..+.-+. .|..|+-+
T Consensus 15 ~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~l 86 (123)
T 4a0e_A 15 RGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSCL 86 (123)
T ss_dssp TTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSCE
T ss_pred CCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCEE
Confidence 334788999999999998 999999999999999999987655 5665 566666 89999988765 89999998
Q ss_pred EEccC
Q 000950 182 VFSPS 186 (1211)
Q Consensus 182 ~f~~~ 186 (1211)
.++..
T Consensus 87 ~lG~~ 91 (123)
T 4a0e_A 87 EVGFL 91 (123)
T ss_dssp EETTE
T ss_pred EEccE
Confidence 87664
No 182
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.33 E-value=0.0002 Score=78.12 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=51.0
Q ss_pred EecceEEEecccccceeecCCCCCccceEEEEeecC--CcceEEEEEec-CcceEEECCeeeCCCceEEee-CCCEEEEc
Q 000950 109 MTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVFS 184 (1211)
Q Consensus 109 i~~~~~tvG~~~~c~~~l~d~~~s~~~Ckl~~~~~~--g~~~a~le~~~-~~g~v~vng~~~~k~~~~~L~-~Gdei~f~ 184 (1211)
+-...+||||...||+.|.|. ++ .+.++.. +. |. .+||+.+ +||+|+|||+++... +.|+ .||+|.|+
T Consensus 89 ~~~~~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~ig 160 (238)
T 1wv3_A 89 SIQDTMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYVE 160 (238)
T ss_dssp SSCSEEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEET
T ss_pred cCCceEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEEC
Confidence 334499999999999999998 33 3333321 11 23 5689987 889999999999665 4799 99999993
No 183
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.28 E-value=0.00021 Score=86.60 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=30.3
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 451 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 451 ~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
..+-+||.||+| ....+|||+||+.++.++.-++.
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEe
Confidence 466799999999 68999999999999988777663
No 184
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.13 E-value=0.004 Score=75.28 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=94.7
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-------hCCcEEEEecccc-
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-------AGANFINISMSSI- 980 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e-------lg~~fi~I~~seL- 980 (1211)
..++|.+...+.|.+.+... ....+-++|+|++|+|||+||..+++. +...++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 46899999999999877520 112356999999999999999998642 2112343333221
Q ss_pred ----cccc------cc-----------chHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 981 ----TSKW------FG-----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 981 ----~s~~------~G-----------~~e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
.... .+ ..+.....+...... ..|.+|+||+++.. . .+..+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~----~l~~l--- 254 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W----VLKAF--- 254 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H----HHHTT---
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H----HHHHh---
Confidence 0000 00 111222222222222 36799999999743 0 11111
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhccCccccc---CCCCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcH
Q 000950 1039 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV---NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1115 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v---~lPd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySg 1115 (1211)
. ....||.||........ . . ...+.+ ...+.++-.++|...+.............|+..+.|. +
T Consensus 255 ----~----~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-P 321 (591)
T 1z6t_A 255 ----D----SQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-P 321 (591)
T ss_dssp ----C----SSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-H
T ss_pred ----c----CCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-c
Confidence 1 23566667755432110 0 0 122333 3678888889998876542212234568899999886 4
Q ss_pred HHHHHHH
Q 000950 1116 SDLKNLC 1122 (1211)
Q Consensus 1116 aDL~~L~ 1122 (1211)
-.|+.+.
T Consensus 322 Lal~~~a 328 (591)
T 1z6t_A 322 LVVSLIG 328 (591)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.0033 Score=65.72 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cc----------------------------
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF---------------------------- 985 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~------~~---------------------------- 985 (1211)
+..-++|.||+|+|||+|++.++..+ +..++.++....... .+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSL 101 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeee
Confidence 34568999999999999999998654 556666654321000 00
Q ss_pred --cchHHHHHHHHHHHHhcCCc--EEEEccchhhh
Q 000950 986 --GEGEKYVKAVFSLASKIAPS--VVFVDEVDSML 1016 (1211)
Q Consensus 986 --G~~e~~I~~lF~~A~k~~Ps--ILfIDEID~L~ 1016 (1211)
.........+...+....|. +|+|||+..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 102 VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 01223334445555566888 99999999875
No 186
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.03 E-value=0.00029 Score=81.84 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=63.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHHhcCCcEEEEccchhhhc-CCC
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RRE 1020 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL~s~~~G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~-~r~ 1020 (1211)
.++..++|+||+|+|||+|+++++...+..++.+..+.- . . -|....-.+..++|+||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~-------~---~--~~~lg~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD-------R---L--NFELGVAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT-------T---H--HHHHGGGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch-------h---H--HHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 344679999999999999999999988776655332220 0 0 01111222446789999998754 221
Q ss_pred CCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHh--ccCccccc
Q 000950 1021 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMV 1076 (1211)
Q Consensus 1021 s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RF~~~I~v 1076 (1211)
-....... ....+...++| .+.|+++||+++.+ +++++ |++..+..
T Consensus 235 l~~~~~~~--~~~~l~~~ldG-------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDG-------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHC-------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred ccccCcch--HHHHHHHHhcC-------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 11111110 11222233333 24567778888877 45554 45443333
No 187
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.94 E-value=0.0027 Score=66.18 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
.+..-++|+||+|+|||+|+..++...+.+++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34456899999999999999999886677888887654
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.93 E-value=0.0025 Score=73.60 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----c------------cchHHHHHHHHHHHHhcC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~----~------------G~~e~~I~~lF~~A~k~~ 1003 (1211)
+..-++|+||||+|||+||..++..+ +.+++.++...-.... + ...+..+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998664 6788888865422111 0 112333333333444567
Q ss_pred CcEEEEccchhhhc
Q 000950 1004 PSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1004 PsILfIDEID~L~~ 1017 (1211)
+.+|+||.+..|.+
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.91 E-value=0.0026 Score=73.24 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccchHHHHHHHHHHHHhcC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~----------------~~G~~e~~I~~lF~~A~k~~ 1003 (1211)
+..-++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 44558999999999999999998765 667888887542210 01122333433334444567
Q ss_pred CcEEEEccchhhhc
Q 000950 1004 PSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1004 PsILfIDEID~L~~ 1017 (1211)
+.+++||.+..+++
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998875
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.83 E-value=0.0035 Score=71.95 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------chHHHHHHHHHHHHhcC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~----~~G------------~~e~~I~~lF~~A~k~~ 1003 (1211)
+..-++|+||||+|||+|+..++... +..++.++...-... .+| ..+..+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998654 667777776542111 111 12333333334445667
Q ss_pred CcEEEEccchhhhc
Q 000950 1004 PSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1004 PsILfIDEID~L~~ 1017 (1211)
|.+|+||++..++.
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999863
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.83 E-value=0.0024 Score=67.59 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecccccc--------cccc----------------chH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITS--------KWFG----------------EGE 989 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e--l-------g~~fi~I~~seL~s--------~~~G----------------~~e 989 (1211)
+..-++|+||+|+|||+|+..++.. + +...+.++...... ..++ ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 3456899999999999999999985 2 45677887654100 0001 011
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 990 ---KYVKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 990 ---~~I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
..+..+...+....|.+|+||++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1223344455566899999999998864
No 192
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.78 E-value=0.0019 Score=65.39 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.-|+|+|+||+||||++++++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4699999999999999999999999998876643
No 193
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.76 E-value=0.016 Score=75.34 Aligned_cols=173 Identities=10% Similarity=0.072 Sum_probs=97.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--C--cEEEEeccccc
Q 000950 909 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSIT 981 (1211)
Q Consensus 909 ddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g--~--~fi~I~~seL~ 981 (1211)
..++|.++..+.|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . + .++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 36899999999999987521 1123568999999999999999987652 1 2 23344433310
Q ss_pred c------------c---------cccchHHHHHHHHHHHHh--cCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhh
Q 000950 982 S------------K---------WFGEGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1038 (1211)
Q Consensus 982 s------------~---------~~G~~e~~I~~lF~~A~k--~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ 1038 (1211)
. . ........+...+..... .++.+|+||+++... .+..
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------~~~~---- 253 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------VLKA---- 253 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------HHTT----
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------HHHh----
Confidence 0 0 000111222222222222 237899999997431 1111
Q ss_pred ccCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCC-CCHHHHHHHHHHHHhhcccCCcccHHHHHHHcCCCcHHH
Q 000950 1039 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1117 (1211)
Q Consensus 1039 ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~l-Pd~eeR~eILk~lL~k~~l~~dvdL~~LA~~T~GySgaD 1117 (1211)
+. ....||.||......... ......+.+.. .+.++-.++|..+.............+|++.+.|. +-.
T Consensus 254 ---~~----~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 254 ---FD----NQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp ---TC----SSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred ---hc----CCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 11 234677777655332110 11224566665 78888888988776433222233467888998876 434
Q ss_pred HHHH
Q 000950 1118 LKNL 1121 (1211)
Q Consensus 1118 L~~L 1121 (1211)
|+.+
T Consensus 324 l~~~ 327 (1249)
T 3sfz_A 324 VSLI 327 (1249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 194
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.70 E-value=0.02 Score=62.12 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
..|++.|++|+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998776 777665555
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.69 E-value=0.00063 Score=80.87 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccCCC
Q 000950 650 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLD 708 (1211)
Q Consensus 650 ~~~l~evl~sesk~~P~Ilf~~die~~l~~~~~~~~~i~s~L~~L~g~VvVIgs~~~~d 708 (1211)
+..+|+.+.. .+|.||||| +..+..+.|...|+ .|.+.|||+||..+
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e 302 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDE 302 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTT
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHH
Confidence 3445555544 679999999 44555555555554 68999999999544
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.036 Score=65.54 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------------ccccchHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------------KWFGEGEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s--------------------~~~G~~e~~I~~lF~~A 999 (1211)
++.-|++.|++|+||||++..+|..+ |..+..+++..... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999776 66776666543211 00112334556677777
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCc--HHHHhccCc-cccc
Q 000950 1000 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD--EAVVRRLPR-RLMV 1076 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld--~aLlrRF~~-~I~v 1076 (1211)
......+|+||...++. .....+..+ ..+..... ...-++|+-++...+.++ ..+...++. .+.+
T Consensus 179 ~~~~~DvVIIDTaGrl~------~d~~lm~el-~~i~~~~~-----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK------EDKALIEEM-KQISNVIH-----PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSS------CCHHHHHHH-HHHHHHHC-----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEE
T ss_pred HhCCCCEEEEECCCccc------chHHHHHHH-HHHHHhhc-----CceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEE
Confidence 77778999999885441 111122111 11211111 113355554543222211 112212221 1344
Q ss_pred CCCCHHHHHHHHHHHHhhc-----------ccC--CcccHHHHHHHcCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000950 1077 NLPDAPNREKIIRVILAKE-----------ELA--SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEKKERAL 1143 (1211)
Q Consensus 1077 ~lPd~eeR~eILk~lL~k~-----------~l~--~dvdL~~LA~~T~GySgaDL~~L~~~Aa~~Airrlle~~~~e~~~ 1143 (1211)
.--|...+...+..+.... .+. ...+.+.++...-|+ +|+..|++.|....-.+-.. .+...
T Consensus 247 TKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~---~~~~~ 321 (443)
T 3dm5_A 247 TKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIK---EEDIE 321 (443)
T ss_dssp ECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHH---HHHHH
T ss_pred ECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHH---HHHHH
Confidence 5555444443333322221 111 234567788777553 58889988876432211100 01101
Q ss_pred HHhhccCCCCCCCccccccccHHHHHHHHHHhc
Q 000950 1144 ALAENRASPPLYSSVDVRPLKMDDFKYAHEQVC 1176 (1211)
Q Consensus 1144 a~ae~~~~~~~~~~~~~r~Lt~EDF~~Aleqv~ 1176 (1211)
.... -..|++||.+.+++++
T Consensus 322 k~~~-------------~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 322 RFLR-------------GKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HHHT-------------TCCCHHHHHHHHHHHH
T ss_pred HHhh-------------CCcCHHHHHHHHHHHH
Confidence 1111 2389999999988875
No 197
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.67 E-value=0.0031 Score=69.22 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=47.8
Q ss_pred hhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 000950 422 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 491 (1211)
Q Consensus 422 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~~ 491 (1211)
++.+..|..+..-|++...+..-.+ -....+.|||.||+| ....+|||++|+.++.+++.+|.+.+.
T Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred HHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 6777777777766655544421111 012346899999999 789999999999999998888865543
No 198
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.62 E-value=0.001 Score=68.01 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
++.|+|.|++|+|||++++.+|+.++++|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999887654
No 199
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.60 E-value=0.0023 Score=66.67 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=22.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---GANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g~~fi~I 975 (1211)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999987776554 5555444
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.52 E-value=0.0083 Score=69.07 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------chHHHHHHHHHHHHhcC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1003 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~----~~G------------~~e~~I~~lF~~A~k~~ 1003 (1211)
+..-++|+|+||+|||+||..++..+ +.+++.++...-... .+| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 44569999999999999999998664 678888887432111 001 11222222222334567
Q ss_pred CcEEEEccchhhhc
Q 000950 1004 PSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1004 PsILfIDEID~L~~ 1017 (1211)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999999864
No 201
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.50 E-value=0.0036 Score=85.37 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc--------chHHHHHHHHHHHHh----
Q 000950 941 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 1001 (1211)
Q Consensus 941 ~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~~----~G--------~~e~~I~~lF~~A~k---- 1001 (1211)
..|..-++|+|+||+|||+||..+|..+ +.++++++.......+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4455679999999999999999998876 4579999886644332 22 112234455555544
Q ss_pred cCCcEEEEccchhhhc
Q 000950 1002 IAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1002 ~~PsILfIDEID~L~~ 1017 (1211)
..|++||||.++.++.
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6799999999999875
No 202
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.47 E-value=0.013 Score=63.19 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------cccccccch-----HHHHHHHHHHHHh----cCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se-------L~s~~~G~~-----e~~I~~lF~~A~k----~~Ps 1005 (1211)
.-++++|++|+|||+++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 448999999999999988887766 56666664221 1111 1110 0112345555554 3478
Q ss_pred EEEEccchhh
Q 000950 1006 VVFVDEVDSM 1015 (1211)
Q Consensus 1006 ILfIDEID~L 1015 (1211)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999876
No 203
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.41 E-value=0.017 Score=64.74 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=41.7
Q ss_pred ccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 412 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 412 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
+|++|-.. +..+..|..+.....+.. ...+.|||.||+| ...++||+++|+.++.++..++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAG--LGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecc
Confidence 57766443 666666655544222111 1234699999999 69999999999998877666553
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.40 E-value=0.005 Score=69.54 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccc-cc-------ccc----------------chH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT-SK-------WFG----------------EGE 989 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~seL~-s~-------~~G----------------~~e 989 (1211)
+..-++|+||||+|||+|+..+|... +..+++++...-+ .. .+| ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 44569999999999999999998875 5577888875421 00 000 011
Q ss_pred ---HHHHHHHHHHHh-cCCcEEEEccchhhhc
Q 000950 990 ---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 990 ---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 1017 (1211)
..+..+...++. ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999999864
No 205
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.0038 Score=62.46 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc-----ChhhHHHHHHHHhcCCCCEEEEeeccC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHTQ 706 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~-----~~~~~~~i~s~L~~L~g~VvVIgs~~~ 706 (1211)
.++.+++.+.. ..+|.||+|||++.+... ..++.+.+...++ .+++.+|++++.
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~ 160 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTL 160 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECH
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCH
Confidence 34555554432 357999999999996432 3566777777776 467888888873
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.38 E-value=0.0076 Score=68.71 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc-c-------ccc----------------chH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K-------WFG----------------EGE 989 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~seL~s-~-------~~G----------------~~e 989 (1211)
+..-++|+||||+|||+||..+|... +..+++++....+. . .+| ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 43458999999999999999998863 55778887654211 0 000 011
Q ss_pred ---HHHHHHHHHHHh--cCCcEEEEccchhhhc
Q 000950 990 ---KYVKAVFSLASK--IAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 990 ---~~I~~lF~~A~k--~~PsILfIDEID~L~~ 1017 (1211)
..+..+...+.. ..+.+|+||.+..++.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 122333444555 6789999999999874
No 207
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0018 Score=67.45 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+...|+|.|++|+|||++++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999887554
No 208
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.35 E-value=0.028 Score=68.41 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=51.8
Q ss_pred cEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccCcccccCCCCHH
Q 000950 1005 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1082 (1211)
Q Consensus 1005 sILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~lPd~e 1082 (1211)
-+|+|||++.|+.... ......+..+...- ....|-+|.+|.+|. .++..++..|..+|.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998864221 11223333343332 225688888888886 8899999999989999999988
Q ss_pred HHHHHHH
Q 000950 1083 NREKIIR 1089 (1211)
Q Consensus 1083 eR~eILk 1089 (1211)
+...||.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8877764
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.014 Score=70.08 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=49.3
Q ss_pred ccccccccchhhHHHHHHhhhhhc-cc-ccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCC
Q 000950 412 SFESFPYYLSDITKNVLIASTYVH-LK-CNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 489 (1211)
Q Consensus 412 sfd~FPYylse~tk~~L~~~~~~h-Lk-~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~ 489 (1211)
+|+++-.. +..+..|....-.. .. ...+.+.+.+-.+..+.+||+||+| ....+||+|||+.++.+++-++.+.
T Consensus 37 ~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45554332 55555555443211 11 1233344444345668999999999 7999999999999999998888755
Q ss_pred CC
Q 000950 490 LP 491 (1211)
Q Consensus 490 ~~ 491 (1211)
+.
T Consensus 113 ~~ 114 (516)
T 1sxj_A 113 VR 114 (516)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 210
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.29 E-value=0.0024 Score=63.88 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
-|+|.|++|+||||+++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998886654
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.013 Score=62.00 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+..-++|+||||+|||+|+..++... +..++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44568999999999999998887543 5666666643
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.009 Score=67.87 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc----cccc------------chHHHHHHHHHH---HHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWFG------------EGEKYVKAVFSL---ASK 1001 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el-----g~~fi~I~~seL~s----~~~G------------~~e~~I~~lF~~---A~k 1001 (1211)
-++|+||||+|||+|+-.++... +..+++++..+-.. ..+| ..++..-.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988776443 56788888754211 0111 122220122222 345
Q ss_pred cCCcEEEEccchhhhc
Q 000950 1002 IAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 1002 ~~PsILfIDEID~L~~ 1017 (1211)
..|.+|+||-|..|++
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999975
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.20 E-value=0.026 Score=59.78 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA--~e--lg~~fi~I~~ 977 (1211)
+..-+.|.||+|+|||+|++.++ .. .+...+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44569999999999999999998 32 2444555543
No 214
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.17 E-value=0.0024 Score=65.18 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999887544
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.15 E-value=0.0028 Score=64.62 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..|+|+|+||+|||++++.++..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999999887654
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.11 E-value=0.016 Score=62.95 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 980 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~seL 980 (1211)
.+..|+|.|+||+|||++++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999876777776554
No 217
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.06 E-value=0.0039 Score=63.34 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|+||+|||++++.||..++++|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 599999999999999999999999887653
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.06 E-value=0.0048 Score=63.05 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+.-|+|.|+||+||||+++.++..++++++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 35699999999999999999999999887653
No 219
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.04 E-value=0.015 Score=64.59 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
+.-|+|.||||+||||+++.++.+++..++.|++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 456999999999999999999999854556676533
No 220
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.02 E-value=0.0032 Score=63.41 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|+|.|++|+|||++++.+|..+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999887643
No 221
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.96 E-value=0.0033 Score=64.80 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e-lg~~fi~I~ 976 (1211)
..|+|+|++|+|||++++.++.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 46999999999999999999999 687776543
No 222
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.93 E-value=0.047 Score=65.72 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=49.1
Q ss_pred EEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCC--CCcHHHHhccCcccccCCCCHHH
Q 000950 1006 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAPN 1083 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRF~~~I~v~lPd~ee 1083 (1211)
+|+|||+..++.. .......++..+...-+ ...+-+|.+|.++. .++..++..|..+|.+...+..+
T Consensus 300 vlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 8999999888531 11122233333322211 13577777887775 68888888898889999999888
Q ss_pred HHHHHHH
Q 000950 1084 REKIIRV 1090 (1211)
Q Consensus 1084 R~eILk~ 1090 (1211)
...++..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8887754
No 223
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.92 E-value=0.0042 Score=64.55 Aligned_cols=32 Identities=38% Similarity=0.601 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|+|.|+||+|||++|+.++..++++++.++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 45999999999999999999999998876553
No 224
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.91 E-value=0.0057 Score=64.55 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
++..|+|.|+||+||||+++.+|+.++++++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345799999999999999999999999877654
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.89 E-value=0.0056 Score=61.63 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
..|.|.||+|+||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999976553
No 226
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.88 E-value=0.0042 Score=63.65 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+.-|+|.|+||+||||+++.+++.++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999998776543
No 227
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.86 E-value=0.014 Score=61.08 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 979 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~se 979 (1211)
+..-+.|.||+|+|||+|++.|+... +...+.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 44559999999999999999999754 22366666543
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0046 Score=67.43 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
-++|.||+|+|||+||++||..++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999999887764
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.85 E-value=0.068 Score=60.22 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc-------------ccchHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s-------~~-------------~G~~e~~I~~lF~~A 999 (1211)
++.-++|.||+|+||||++..+|..+ +..+..+++..... .| .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44669999999999999999998766 55555555432110 00 011122223344555
Q ss_pred HhcCCcEEEEccchh
Q 000950 1000 SKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~ 1014 (1211)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 667789999998853
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0061 Score=62.07 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.-|+|.|+||+||||+|+.++..++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5699999999999999999999999876543
No 231
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.83 E-value=0.0055 Score=60.81 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
-|+|.|+||+||||+|+.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889887654
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.81 E-value=0.018 Score=67.31 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------ccccc----------------h-
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGE----------------G- 988 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~seL~s--------~~~G~----------------~- 988 (1211)
+..-++|+||||+|||+|+..++... +...++++...... ..+|- .
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 44569999999999999999876443 23477777654211 00110 0
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000950 989 --EKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1018 (1211)
Q Consensus 989 --e~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1018 (1211)
...+..+...+....|.+|+||++-.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112333344455567999999999988753
No 233
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.78 E-value=0.0062 Score=61.17 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|++|+|||++++.++..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 599999999999999999999999887653
No 234
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.77 E-value=0.015 Score=68.69 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
.++|.|++|||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998877
No 235
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.75 E-value=0.016 Score=63.29 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 980 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e---lg~~fi~I~~seL 980 (1211)
.-|+|.|+||+|||++|+.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46999999999999999999998 6888886665443
No 236
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.74 E-value=0.044 Score=66.18 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=90.6
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCc---EEEEeccccc---
Q 000950 912 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGAN---FINISMSSIT--- 981 (1211)
Q Consensus 912 ~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~----elg~~---fi~I~~seL~--- 981 (1211)
.|.+..++.|.+.+.. .. ....+.|.|+|+.|+|||+||+.+++ ..... .+.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MC--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HT--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhc---------cc--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 4899999999887742 10 11235689999999999999999997 23221 1233333210
Q ss_pred ---------ccccc-----------c-hHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhc
Q 000950 982 ---------SKWFG-----------E-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1039 (1211)
Q Consensus 982 ---------s~~~G-----------~-~e~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~l 1039 (1211)
..... . ....+...+...-.. ++.+|+||+++.. ..+ .+...
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~~~--~~~~~- 263 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------ETI--RWAQE- 263 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------HHH--HHHHH-
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------hhh--ccccc-
Confidence 00000 0 011122233333333 3789999999753 011 11100
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhccCcccccCCCCHHHHHHHHHHHHhhcccCCc--ccHHHHHHHcCCCcHHH
Q 000950 1040 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSD 1117 (1211)
Q Consensus 1040 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~~I~v~lPd~eeR~eILk~lL~k~~l~~d--vdL~~LA~~T~GySgaD 1117 (1211)
....||.||........ .......+.++..+.++-.++|...........+ .....|++.+.|. +-.
T Consensus 264 --------~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLA 332 (549)
T 2a5y_B 264 --------LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PAT 332 (549)
T ss_dssp --------TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHH
T ss_pred --------CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHH
Confidence 22466677764322110 0011245788888888888888876322111011 1245677777765 444
Q ss_pred HHHH
Q 000950 1118 LKNL 1121 (1211)
Q Consensus 1118 L~~L 1121 (1211)
|+.+
T Consensus 333 l~~~ 336 (549)
T 2a5y_B 333 LMMF 336 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 237
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.71 E-value=0.12 Score=58.20 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
.+..-++|.|+||+|||+|+..+|... +.+++.++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 344559999999999999999998664 4677777753
No 238
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.041 Score=58.11 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=48.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEeccccccc-------------------------cc--------
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSITSK-------------------------WF-------- 985 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e----lg~~fi~I~~seL~s~-------------------------~~-------- 985 (1211)
+..-++|+|+||+|||+||..+|.. .+.+++.++...-... +.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhccc
Confidence 4355899999999999999887643 2667777664320000 00
Q ss_pred ---------cchHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000950 986 ---------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 986 ---------G~~e~~I~~lF~~A~k~~PsILfIDEID~L~~ 1017 (1211)
......+..+...+....+.+++||.+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred chhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 00122344455566777889999999988854
No 239
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.68 E-value=0.0055 Score=61.34 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|+|.|++|+|||++++.+++.++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999998877543
No 240
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.67 E-value=0.019 Score=63.64 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=27.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 452 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 452 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
.+.|||+||+| ...++||+++|+.++.++..++
T Consensus 38 ~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 38 LEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEEC
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEe
Confidence 46799999999 7899999999999887665544
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.0065 Score=61.87 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..|+|.|+||+||||+++.+++.++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4589999999999999999999999766543
No 242
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.65 E-value=0.0086 Score=62.18 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+.-|+|.|++|+||||+++.|+..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35699999999999999999999998776653
No 243
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.64 E-value=0.034 Score=59.93 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.+||+||+|+|||.++.+++..++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777666544
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.63 E-value=0.0055 Score=62.88 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.-|+|.|+||+|||++|+.+++.++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999766554
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.60 E-value=0.0082 Score=62.94 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|+||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999999887655
No 246
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.56 E-value=0.0062 Score=61.76 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999999999877
No 247
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.56 E-value=0.009 Score=62.53 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|+||+||||+|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999887655
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.52 E-value=0.016 Score=66.59 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=44.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc-ccc---------cccccchHHHHHHHHHHHHhcCCcEEEEc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1010 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s-eL~---------s~~~G~~e~~I~~lF~~A~k~~PsILfID 1010 (1211)
.-++|.||+|+||||+.++++..+ +..++.+.-+ ++. ....+.........+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358999999999999999998766 3444443321 110 00111111234446677778899999999
Q ss_pred cch
Q 000950 1011 EVD 1013 (1211)
Q Consensus 1011 EID 1013 (1211)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 993
No 249
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.0092 Score=60.60 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5699999999999999999999999776654
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.51 E-value=0.0063 Score=61.25 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVAT-EAGANFI 973 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~-elg~~fi 973 (1211)
.-|+|.|+||+||||+|+.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4589999999999999999998 4554443
No 251
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0099 Score=64.26 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
++..|+|.||||+||||+|+.+++.++++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 457899999999999999999999998877654
No 252
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.01 Score=63.42 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+..|+|.|+||+||||+|+.||+.++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999877654
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.50 E-value=0.008 Score=61.07 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-|+|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.50 E-value=0.025 Score=64.79 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 979 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------g~~fi~I~~se 979 (1211)
+..-+.|+||+|+|||+|++.++... +..+++++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33558999999999999999999876 24567777644
No 255
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.48 E-value=0.0074 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.-|+|.|++|+|||++++.+++.++++++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46999999999999999999999998766543
No 256
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.46 E-value=0.0091 Score=63.34 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+..|+|.|+||+||||+++.|++.++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35799999999999999999999999877654
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.44 E-value=0.048 Score=59.73 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-++|+||+|+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33459999999999999999998644
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.43 E-value=0.017 Score=64.79 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=48.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEeccccc-cc-------ccc---------
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG--------- 986 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---------------g----~~fi~I~~seL~-s~-------~~G--------- 986 (1211)
+..-++|+||||+|||+||..+|... | ..+++++...-+ .. .+|
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 44558999999999999999998753 2 567778765421 00 000
Q ss_pred -------chH---HHHHHHHHHHHh-cCCcEEEEccchhhhc
Q 000950 987 -------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1017 (1211)
Q Consensus 987 -------~~e---~~I~~lF~~A~k-~~PsILfIDEID~L~~ 1017 (1211)
..+ ..+..+....+. ..+.+|+||.+..++.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 122334444455 5678999999999864
No 259
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.43 E-value=0.0085 Score=73.16 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
..++|+|+||||||+++.+++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 468999999999999999998765 66666554
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.42 E-value=0.049 Score=57.00 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
.+.|.||+|+|||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.42 E-value=0.012 Score=59.54 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
...++|.|++|+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3468999999999999999999998866543
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.42 E-value=0.025 Score=76.47 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=59.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----------------cccccccchHHHHHHHHHHHHhcCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 1005 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se----------------L~s~~~G~~e~~I~~lF~~A~k~~Ps 1005 (1211)
+-|+||||+|+|||+||-.++.+. |-....++... |.-......|+.+..+...++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 349999999999999988776443 77777777643 22224556688899999999999999
Q ss_pred EEEEccchhhhcCCC
Q 000950 1006 VVFVDEVDSMLGRRE 1020 (1211)
Q Consensus 1006 ILfIDEID~L~~~r~ 1020 (1211)
+|+||.+..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987643
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.40 E-value=0.0076 Score=61.64 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
++.-+.|.||+|+||||+++.|+...+...+.++..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3356999999999999999999988777777777544
No 264
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.38 E-value=0.0097 Score=62.87 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..|+|.|+||+||||+++.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999887655
No 265
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.29 E-value=0.014 Score=59.47 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
-|.|.|++|+||||+++.+++.+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 89988776
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.27 E-value=0.06 Score=59.35 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~ 977 (1211)
+..-++|.||||+|||+|++.||..+ |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44568999999999999999998665 445655553
No 267
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.26 E-value=0.013 Score=62.91 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
++-|+|.||||+||+|.|+.|++.++++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 366899999999999999999999987654
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.24 E-value=0.029 Score=63.78 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
..|+|.||+|+|||+|++.+|+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999999888753
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.24 E-value=0.013 Score=62.35 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.|+|.||||+||+|.|+.|++.++++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999987654
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.22 E-value=0.014 Score=60.66 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
++.-+.|.||+|+||||+++.|+..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3456999999999999999999999976544
No 271
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.21 E-value=0.064 Score=63.32 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 978 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s 978 (1211)
.+..-++|.|+||+|||+|+..+|... |.+++.++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 344569999999999999999987654 5677777753
No 272
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.18 E-value=0.018 Score=58.61 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+.-|.|.|++|+||||+++.++..+ |.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3568999999999999999999988 9999988753
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.16 E-value=0.011 Score=62.43 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..|+|.|+||+||||+++.+|+.++..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999766543
No 274
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.15 E-value=0.014 Score=61.37 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|+||+||||+++.+++.++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887665
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.11 E-value=0.031 Score=61.39 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc--ccc--------cccccchHHHHHHHHHHHHhcCCcEEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS--SIT--------SKWFGEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s--eL~--------s~~~G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
+..-++|.||+|+|||||+++++..+ ...++...-. .+. ...+|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 33458999999999999999998765 2233222211 000 001111112235566666677899999
Q ss_pred Eccc
Q 000950 1009 VDEV 1012 (1211)
Q Consensus 1009 IDEI 1012 (1211)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.98 E-value=0.093 Score=61.76 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 978 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s 978 (1211)
.+..-++|.|+||+|||+|+..+|... +.+++.++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344558999999999999999987654 5678777753
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.96 E-value=0.015 Score=59.64 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987653
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.92 E-value=0.017 Score=59.49 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 977 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el-g~~fi~I~~ 977 (1211)
+.-|.|.|++|+||||+++.+++.+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3569999999999999999999998 688877653
No 279
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.89 E-value=0.019 Score=60.36 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
..|.|.||+|+||||+++.++..++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 369999999999999999999999977654
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.86 E-value=0.011 Score=60.04 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG---ANFINISM 977 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~ 977 (1211)
-|+|.|+||+||||+++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999885 33555543
No 281
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.022 Score=58.25 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
|.|.|++|+||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 998876653
No 282
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.82 E-value=0.014 Score=67.17 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
..|+|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888744
No 283
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.82 E-value=0.018 Score=61.19 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998766544
No 284
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.76 E-value=0.079 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776543
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.71 E-value=0.013 Score=60.69 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|.|.|++|+||||+++.++. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887776654
No 286
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.64 E-value=0.13 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK-AVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr-AIA~e 967 (1211)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998643 34444
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.63 E-value=0.023 Score=58.63 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|.|.|++|+|||++++.++..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998877544
No 288
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.60 E-value=0.29 Score=57.88 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
.+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344559999999999999999987665 6778777753
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.55 E-value=0.033 Score=57.86 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
++.-|.|.||+|+||||++++++..+ |...+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34568999999999999999999988 55545666443
No 290
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.51 E-value=0.039 Score=63.71 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc-cc--------ccc-cccchHHHHHHHHHHHHhcCCcEEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SI--------TSK-WFGEGEKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s-eL--------~s~-~~G~~e~~I~~lF~~A~k~~PsILf 1008 (1211)
+...++|.||+|+||||++++++..+ ...++.+... ++ ... .+|.....+...+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 33458999999999999999998765 2344343321 10 000 0111111234455666677899999
Q ss_pred Eccch
Q 000950 1009 VDEVD 1013 (1211)
Q Consensus 1009 IDEID 1013 (1211)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99993
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.46 E-value=0.036 Score=57.15 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN--FINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~--fi~I~ 976 (1211)
.-|+|.|+||+||||+++.+++.++.. ++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec
Confidence 468999999999999999999998763 55443
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.41 E-value=0.13 Score=56.45 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=29.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEecCCC
Q 000950 453 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 490 (1211)
Q Consensus 453 ~rILLsgp~GsE~Yqe~LaKALA~~f---~a~LLilDs~~~ 490 (1211)
..|||.||+| ....+|||+||+.+ +.+++.+|...+
T Consensus 48 ~~~ll~G~~G--tGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTG--VGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSS--SSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCC--cCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4699999999 68999999999998 556787776443
No 293
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.34 E-value=0.034 Score=60.40 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
...|.|.||+|+||||+++.||+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468999999999999999999999987653
No 294
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.31 E-value=0.25 Score=52.31 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc---------ccccc-----------c--c----chHHHHHHHH
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKW-----------F--G----EGEKYVKAVF 996 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se---------L~s~~-----------~--G----~~e~~I~~lF 996 (1211)
.|++|+++|.|||++|-.+|.++ |..+..+..-. +...+ . . ..+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 59999999999999999998766 77777663211 22221 0 0 0123455566
Q ss_pred HHHHhc----CCcEEEEccchhhhcCCCCCchHHHHHHHHHhhhhhccCCcccCCccEEEEEecCCCCCCcHHHHhccCc
Q 000950 997 SLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1072 (1211)
Q Consensus 997 ~~A~k~----~PsILfIDEID~L~~~r~s~~~~e~l~~il~~LL~~ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRF~~ 1072 (1211)
..+++. ...+|+|||+-..+.-..-+ . ..+++ .+.. .....-||.|+|.+ ++.++..-+.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~-~----~ev~~----~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLP-L----EEVIS----ALNA----RPGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSC-H----HHHHH----HHHT----SCTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCC-H----HHHHH----HHHh----CcCCCEEEEECCCC---cHHHHHhCcc
Confidence 666554 36899999996643222111 1 11222 2211 22556788888763 4566665443
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.30 E-value=0.028 Score=60.36 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
+.-+.|.||+|+||||+++.|++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999987544
No 296
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.29 E-value=0.013 Score=60.70 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=24.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGAN 971 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~ 971 (1211)
+.-|+|.|++|+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3569999999999999999999987543
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.099 Score=61.71 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------cc-----c-----cchHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KW-----F-----GEGEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s----------~~-----~-----G~~e~~I~~lF~~A 999 (1211)
++.-+++.|++|+||||++..+|..+ |..+..+++..... .. + ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34668999999999999999998776 66666666432110 00 0 01222334455556
Q ss_pred HhcCCcEEEEccchhh
Q 000950 1000 SKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L 1015 (1211)
....+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6567899999988654
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.26 E-value=0.15 Score=60.72 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s 978 (1211)
+..-++|.|+||+|||+|+..+|... |.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44559999999999999999998765 5577777753
No 299
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.24 E-value=0.032 Score=60.55 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
..|.|.||+|+|||++++.|+..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 569999999999999999999999987654
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.24 E-value=0.06 Score=56.42 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 979 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~se 979 (1211)
+.-|+|.|++|+|||++++.++..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999876 46677777533
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.20 E-value=0.031 Score=57.43 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
+..|.|.|++|+|||++++.++.. |++++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 356999999999999999999998 87776543
No 302
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.19 E-value=0.023 Score=59.73 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
-|.|+|++|+||||+++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898876654
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.10 E-value=0.028 Score=58.36 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 588999999999999999998 88877643
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.07 E-value=0.17 Score=59.41 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=52.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-ccc
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 981 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~s-eL~ 981 (1211)
.++++++-.......|...+ ..+..-++|.||+|+||||+.++++..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 45666665555555555532 11223489999999999999999998873 334444321 110
Q ss_pred -c----ccccc-hHHHHHHHHHHHHhcCCcEEEEccc
Q 000950 982 -S----KWFGE-GEKYVKAVFSLASKIAPSVVFVDEV 1012 (1211)
Q Consensus 982 -s----~~~G~-~e~~I~~lF~~A~k~~PsILfIDEI 1012 (1211)
. ..+.. ........+..+-+..|.+|++.|+
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 00110 0011223344455678999999986
No 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.03 E-value=0.23 Score=64.46 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 912 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 912 ~Gle~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
+|.+..++.|.+.+.. ..+.+-|.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~-------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE-------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH-------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc-------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7888888888887652 012356899999999999999999863
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.02 E-value=0.037 Score=60.57 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|.|.|++|+|||++++.+|..++++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999877643
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.00 E-value=0.017 Score=60.00 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+.-|+|.|++|+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999874
No 308
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.99 E-value=0.022 Score=65.07 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
+-|+|.||+|+|||+|+..||+.++..++..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999888887754
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.96 E-value=0.15 Score=51.90 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKA 963 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArA 963 (1211)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4589999999999999994
No 310
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.86 E-value=0.052 Score=58.64 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEeccccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMSSIT 981 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~--------fi~I~~seL~ 981 (1211)
.-|.|.|++|+|||++|+.|+..++++ ++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 569999999999999999999999876 3456666554
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.85 E-value=0.058 Score=55.13 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++.-|+|.|++|+|||++++.++..+ +.+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34568999999999999999999887 455666654
No 312
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.77 E-value=0.033 Score=71.89 Aligned_cols=77 Identities=27% Similarity=0.334 Sum_probs=61.6
Q ss_pred CCCCCCccccccCCccccCCCeeeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCcceeeecCCCCcCCCCCCCC
Q 000950 543 ALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFC 622 (1211)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~c 622 (1211)
+..++..+..-..+++|.-||||.||..+.+ -+.|.||.|+..--.+..--+-|.||.+.-.|++||+.|
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~VqdsG~----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQDSGK----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecCCCC----------CccccceEEEEEecCCCceEEEEEeccCccCCCcccccc
Confidence 4455555555567888999999999986542 478999999887655555569999999999999999999
Q ss_pred CCCCCcc
Q 000950 623 EDDHGFF 629 (1211)
Q Consensus 623 e~~~~~~ 629 (1211)
.+..|.-
T Consensus 1120 s~~RG~~ 1126 (1155)
T 3pie_A 1120 QTRRGLG 1126 (1155)
T ss_pred ccccccc
Confidence 9998844
No 313
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.72 E-value=0.23 Score=55.55 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~s 978 (1211)
++.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44669999999999999999998655 5566666653
No 314
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.72 E-value=0.22 Score=51.96 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHH-HHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML-AKAVATE 967 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~L-ArAIA~e 967 (1211)
..+|+++.-.+.+.+.+.+.- +..+.-+....+ ....+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 457888877777777776642 111111111000 01125699999999999986 3334443
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.69 E-value=0.047 Score=62.02 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccc-----c---cccchHHHHHHHHHHHHhcCCcEEEEccch
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS-----K---WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1013 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~seL~s-----~---~~G~~e~~I~~lF~~A~k~~PsILfIDEID 1013 (1211)
..++|.||+|+|||||+++|+.... .-.+.++...... . ++.......+..+..|....|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998763 2355555432110 1 110012234555666777889999999984
No 316
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.63 E-value=0.039 Score=62.42 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
.-++|.||+|+|||+||..+|+.++..++..|.-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 46899999999999999999999998888877544
No 317
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.58 E-value=0.16 Score=53.35 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc--------ccccccccch-----HHHHHHHHHHHHhcCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 1008 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s--------eL~s~~~G~~-----e~~I~~lF~~A~k~~PsILf 1008 (1211)
.-.+++||.|+|||+.+-.+++.+ +..++.+... .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 347999999999999888887766 6666555311 11111 1100 0011244544432 347999
Q ss_pred Eccchhh
Q 000950 1009 VDEVDSM 1015 (1211)
Q Consensus 1009 IDEID~L 1015 (1211)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999876
No 318
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.52 E-value=0.32 Score=51.38 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=31.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LAr 962 (1211)
..+|+++.-.+.+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 356888877777777776531 111111111000 0112569999999999998543
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.51 E-value=0.058 Score=57.59 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
+..|.|.|++|+|||++++.++..+|++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3469999999999999999999999987764
No 320
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.50 E-value=0.053 Score=56.73 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
..|.|.|++|+|||++++.++..+|++++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46999999999999999999999998776543
No 321
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.44 E-value=0.058 Score=56.56 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88776654
No 322
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.43 E-value=0.23 Score=62.66 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=33.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCCh--hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 907 TFDDIGALENVKDTLKELVMLPLQRP--ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 907 sfddI~Gle~vk~~L~e~V~~pL~~p--elf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
+|++++-.....+.+.+.-..|+... .+... ......+++.||+|+|||+++..++..
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~---l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL---YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH---HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH---HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46666555666666655444443221 11110 111246999999999999977777544
No 323
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.22 E-value=0.23 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
+.+++.+|+|+|||..+-..+.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 57999999999999976655444
No 324
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.16 E-value=0.049 Score=56.77 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+.-|+|.||+|+|||++++.++..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35699999999999999999999884
No 325
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.11 E-value=0.15 Score=58.20 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 942 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 942 ~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
.|..-++|.|+||+|||+|+..+|..+ +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344559999999999999999998764 677777765
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.11 E-value=0.045 Score=62.68 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.-|+|.||+|+|||+||..||..++..++..|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3589999999999999999999999777766643
No 327
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.09 E-value=0.051 Score=59.80 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-g~~fi~I 975 (1211)
.-|+|.|+||+||||+|+.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 458999999999999999999974 6555533
No 328
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.04 E-value=0.6 Score=48.58 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHH
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
.+|++++-.+.+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 35777766666666665521 111111111000 001246999999999999866555443
No 329
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.01 E-value=0.047 Score=60.37 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
+.-|.|+|++|+||||+|+.++ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3459999999999999999999 688876554
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.98 E-value=0.035 Score=57.74 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 974 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el-g~~fi~ 974 (1211)
+.-|.|.|++|+||||+++.++..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458899999999999999999877 555444
No 331
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.88 E-value=0.072 Score=62.27 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
+.-|+|.|+||+|||++|+.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3568999999999999999999998876554
No 332
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.78 E-value=0.24 Score=50.84 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr 962 (1211)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 333
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.78 E-value=0.41 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA 965 (1211)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998666553
No 334
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.73 E-value=0.057 Score=61.27 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.-|+|.||+|+|||+|+..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998877776654
No 335
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.63 E-value=0.072 Score=56.07 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
-|.|.|++|+|||++++.+|+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999884
No 336
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.59 E-value=0.075 Score=54.35 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
-++|.||+|+||||+++.|+...+. .+.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcc
Confidence 4789999999999999999986643 234443
No 337
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.58 E-value=0.18 Score=59.38 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEEcChhhhhc---cChhhHHHHHHHHhcCCCCEEEEeeccCCCCccccCCCCCceeeccCcchhhhccccCCCCc
Q 000950 664 SPLIVFVKDIEKSLT---GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNF 740 (1211)
Q Consensus 664 ~P~Ilf~~die~~l~---~~~~~~~~i~s~L~~L~g~VvVIgs~~~~d~~k~k~~~~~~~l~~f~~~~~~l~d~~~pd~~ 740 (1211)
.|-||||||++.+.. .+.++++.|....+ .|..|||++++.+.. +
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~------------------------------l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQK------------------------------L 241 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSCGGG------------------------------C
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCCHHH------------------------------H
Confidence 678999999999553 24556655554444 467788887762211 1
Q ss_pred cccccccccchHHHHHhhhhCCCeEEEcCCChhhHHHHHH--HHhhhcchhhhccchhhHHHHHhhhCCCCcccchhhhc
Q 000950 741 SRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWK--QQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCI 818 (1211)
Q Consensus 741 ~~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALLRRfe--rq~e~~Lpd~~gR~~Il~IhT~l~~~~l~d~dL~~LA~ 818 (1211)
..+ +++|++||. ..++++.|+...|..|++-+-......+++..++.|+.
T Consensus 242 ~~l----------------------------~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~ 293 (440)
T 2z4s_A 242 SEF----------------------------QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_dssp SSC----------------------------CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHH----------------------------HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 100 113444443 34444445544444444433222223456666778887
Q ss_pred ccCCCCHHHHHHHHhhhhhhHh
Q 000950 819 KDQTLTTEGVEKIVGWALSHHF 840 (1211)
Q Consensus 819 ~tkg~sgadI~~Lv~~A~s~Al 840 (1211)
.+.| +..++..++..+..++.
T Consensus 294 ~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 294 NVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HCCS-CHHHHHHHHHHHHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHH
Confidence 7654 67788888888777764
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.57 E-value=0.083 Score=63.61 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-ccc---cc--------ccchHHHHHHHHHHHHhcCCcEEEEc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVVFVD 1010 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~se-L~s---~~--------~G~~e~~I~~lF~~A~k~~PsILfID 1010 (1211)
..++|.||+|+||||++++++..+. ...+.+.... +.- .+ .+...-.+..+...+.+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999988773 3455655432 210 00 01111123445556667889999999
Q ss_pred cch
Q 000950 1011 EVD 1013 (1211)
Q Consensus 1011 EID 1013 (1211)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 983
No 339
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.44 E-value=0.073 Score=62.27 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
.-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999887776654
No 340
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.41 E-value=0.16 Score=57.74 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=53.0
Q ss_pred hhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCC
Q 000950 422 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 490 (1211)
Q Consensus 422 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~ 490 (1211)
+..+..|..+...|.+...............+.|||.||+| ....+||||||+.++.+++.++.+.+
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHh
Confidence 67788888888777766544333345556678999999999 68999999999999999999987643
No 341
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.38 E-value=0.52 Score=58.00 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 914 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 914 le~vk~~L~e~V~~pL~~pelf~k~~i~~Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
.+.+++++...+.. + .-.||+||||||||+++..+..++ +..+..+..
T Consensus 191 N~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46777777776541 1 147999999999998555544333 555555543
No 342
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.27 E-value=0.2 Score=52.95 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=41.4
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEeccccccccccchH------------HHHHHHHHHHHhcCCcEEEE
Q 000950 945 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISMSSITSKWFGEGE------------KYVKAVFSLASKIAPSVVFV 1009 (1211)
Q Consensus 945 ~gILL~GPpGTGKT-~LArAIA~el--g~~fi~I~~seL~s~~~G~~e------------~~I~~lF~~A~k~~PsILfI 1009 (1211)
.=.+++||.|+||| .|.+++.+.. +..++.+... +...+..... .....++...+ ...+|+|
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 34799999999999 7999987654 6777777643 1111110000 01122333222 3579999
Q ss_pred ccchhh
Q 000950 1010 DEVDSM 1015 (1211)
Q Consensus 1010 DEID~L 1015 (1211)
||+.-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999977
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.16 E-value=0.085 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+.-+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999876
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.11 E-value=0.3 Score=50.77 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
+.-+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458999999999999999999876 6666666543
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.10 E-value=0.95 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
++.-++|.|++|+|||||++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568999999999999999999776
No 346
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.08 E-value=0.09 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 347
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.06 E-value=0.089 Score=54.66 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+.-+.|.||+|+|||||++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999887
No 348
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.95 E-value=0.079 Score=55.57 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
++.-+.|.||+|+|||+|++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334589999999999999999998874
No 349
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.87 E-value=0.4 Score=51.40 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=23.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 947 ILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
.+++|+.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5799999999999887776655 66776665
No 350
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.82 E-value=0.23 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~se 979 (1211)
.-|+|.|.||+|||++|+.++..+ +.....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 458999999999999999999988 44555566544
No 351
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.72 E-value=0.11 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||++.|+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998763
No 352
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.71 E-value=0.061 Score=57.31 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM 977 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~fi~I~~ 977 (1211)
.++|+|.||+|+|||+||.+++.... .++..|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999998866 6655443
No 353
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.61 E-value=0.46 Score=49.84 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr 962 (1211)
+.+++.+|+|+|||..+.
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.55 E-value=0.67 Score=54.74 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=27.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 453 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 453 ~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
+.|||.||+| ....+||++||+.++.++.-+.
T Consensus 51 ~~vLL~GppG--tGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPG--TGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCC--CcHHHHHHHHHHHhCCCeEEEE
Confidence 5799999999 6899999999999977655443
No 355
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.43 E-value=0.94 Score=50.46 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------c--------cc-----cchHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K--------WF-----GEGEKYVKAVFSLA 999 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s-------~--------~~-----G~~e~~I~~lF~~A 999 (1211)
++..+.|.|++|+|||+++..+|..+ +..+..+++..... . .+ .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568889999999999999998765 55666655421100 0 00 01122334556666
Q ss_pred HhcCCcEEEEccchhh
Q 000950 1000 SKIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 1000 ~k~~PsILfIDEID~L 1015 (1211)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567789999998443
No 356
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.40 E-value=0.68 Score=48.30 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr 962 (1211)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998643
No 357
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.38 E-value=0.82 Score=54.89 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=49.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----ccc---------------ccc---------chHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK---------------WFG---------EGEKY 991 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL----~s~---------------~~G---------~~e~~ 991 (1211)
+..-++|.||+|+|||+|++.++... |..++.+...+- ... ... .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 33569999999999999999998654 445555553221 000 000 22345
Q ss_pred HHHHHHHHHhcCCcEEEEccchhhh
Q 000950 992 VKAVFSLASKIAPSVVFVDEVDSML 1016 (1211)
Q Consensus 992 I~~lF~~A~k~~PsILfIDEID~L~ 1016 (1211)
.+.++..+....|.+|+||-+..|.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5666777777889999999776663
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.35 E-value=0.4 Score=57.67 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++..|+|.|++|+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999776 666666665
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.33 E-value=0.12 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
-|+|.||+|+|||+|++.+..+..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3999999999999999999888643
No 360
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.24 E-value=0.69 Score=51.69 Aligned_cols=72 Identities=19% Similarity=0.055 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---------------c----c-cchHHHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------------W----F-GEGEKYVKAVFSLAS 1000 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~seL~s~---------------~----~-G~~e~~I~~lF~~A~ 1000 (1211)
+.-+++.|++|+|||+++..+|..+ +..+..+++...... . . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998766 666766665321100 0 0 012233345556665
Q ss_pred hcCCcEEEEccchhh
Q 000950 1001 KIAPSVVFVDEVDSM 1015 (1211)
Q Consensus 1001 k~~PsILfIDEID~L 1015 (1211)
+....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999876443
No 361
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.21 E-value=0.47 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999999776
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.12 E-value=0.47 Score=55.89 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccc----------------c---c-chHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW----------------F---G-EGEKYVKAVFSL 998 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~seL~s~~----------------~---G-~~e~~I~~lF~~ 998 (1211)
+++.|++.|++|+||||++..+|..+ |..+..+++....... . + .....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45779999999999999999998665 6777777765321100 0 0 112333555666
Q ss_pred HHhcCCcEEEEccchh
Q 000950 999 ASKIAPSVVFVDEVDS 1014 (1211)
Q Consensus 999 A~k~~PsILfIDEID~ 1014 (1211)
+....-.+++||=.-.
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 6544567999987543
No 363
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.98 E-value=0.12 Score=54.12 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335589999999999999999998874
No 364
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.93 E-value=0.46 Score=50.56 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LAr 962 (1211)
..+|+++.-...+.+.+.+. .+..+.-+....+ ....+.+++.+|+|+|||..+.
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 45777776666666666552 1221111111000 0012479999999999998643
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.90 E-value=0.12 Score=53.82 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
...+.|.||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35699999999999999999998763
No 366
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.90 E-value=0.44 Score=50.64 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LAr 962 (1211)
..+|+++.-.+.+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 457888877777777775531 111111111000 0112469999999999997643
No 367
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=90.88 E-value=0.48 Score=60.84 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVAT 966 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~ 966 (1211)
.-++|.||.|+||||+.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4589999999999999999863
No 368
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.88 E-value=0.46 Score=53.20 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.7
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAV 964 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAI 964 (1211)
+.+++.+|+|+|||..+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999865543
No 369
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.66 E-value=0.62 Score=50.09 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr 962 (1211)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998543
No 370
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.63 E-value=0.14 Score=52.55 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg 969 (1211)
-+.|.||+|+|||||++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.60 E-value=0.074 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg 969 (1211)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 372
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.54 E-value=0.18 Score=62.24 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
.-|+|+|.+|+||||+|++++..+ |.+++.++..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 459999999999999999999998 9999988743
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.47 E-value=1.1 Score=52.60 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45668899999999999999999776 556666665
No 374
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.36 E-value=1 Score=54.13 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAI--A~el--g~~fi~I~~ 977 (1211)
+..-++|.||+|+|||+|++.+ +... +...+.++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4456999999999999999994 3322 444555554
No 375
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.30 E-value=0.17 Score=54.41 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFIN 974 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~ 974 (1211)
.-|.|.|++|||||++++.+|+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358999999999999999999999999865
No 376
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.25 E-value=0.2 Score=54.34 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I 975 (1211)
..+-|.|+||+|||++|+.|++.++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4588999999999999999999999887654
No 377
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.11 E-value=1.3 Score=49.51 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhcc--ChhhHHHHHHHHhcC--CCCEEEEeeccCC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQL 707 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~--~~~~~~~i~s~L~~L--~g~VvVIgs~~~~ 707 (1211)
+++.+++.+.. ...|.||+|||++.+... .++....+...++.+ ..++++|+++|..
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 45666666643 346999999999996554 455555555555655 5689999999943
No 378
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.01 E-value=2.4 Score=47.88 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
++.-++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45669999999999999999998766 566666665
No 379
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.99 E-value=0.32 Score=50.00 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=37.2
Q ss_pred HHHHHHHHhhc-cCCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccC
Q 000950 650 INELFEVALNE-SKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 706 (1211)
Q Consensus 650 ~~~l~evl~se-sk~~P~Ilf~~die~~l~~~~~~~~~i~s~L~~L~g~VvVIgs~~~ 706 (1211)
+..+++.+... ....|.||+|||++.+ ..+..+.|...|+..+.++++|.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHHHHHhhhchhcCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 33444443322 2357899999999994 345566777888888888888888873
No 380
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.87 E-value=0.25 Score=58.82 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 369999999999999999887654
No 381
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.79 E-value=1 Score=47.42 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLA 961 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LA 961 (1211)
..+|++++-.+.+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 356777766666666665521 111111111000 011257999999999999863
No 382
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.49 E-value=1.1 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+.+|+.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766655443
No 383
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.35 E-value=0.2 Score=52.33 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000950 947 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 979 (1211)
Q Consensus 947 ILL~GPpGTGKT~LArAIA~elg~~fi~I~~se 979 (1211)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 88888887654
No 384
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.30 E-value=0.22 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 385
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.25 E-value=1.5 Score=49.55 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LArAIA 965 (1211)
..+|+++.-...+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346777776666666665521 111111111000 0012469999999999998654433
No 386
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.24 E-value=0.76 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
...++|+||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3569999999999999999998764
No 387
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.20 E-value=0.29 Score=55.84 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=52.4
Q ss_pred hhHHHHHHhhhhhcccccccccc---------------cCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 000950 422 DITKNVLIASTYVHLKCNNFAKY---------------ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 486 (1211)
Q Consensus 422 e~tk~~L~~~~~~hLk~~~~~k~---------------~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 486 (1211)
++.|..|..+.+.|++......+ ........+.|||.||+| ....+|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 88899999998888766432100 012344567899999999 7899999999999999999999
Q ss_pred cCCCC
Q 000950 487 SLLLP 491 (1211)
Q Consensus 487 s~~~~ 491 (1211)
...+.
T Consensus 105 ~~~~~ 109 (376)
T 1um8_A 105 ATSLT 109 (376)
T ss_dssp GGGCC
T ss_pred chhhh
Confidence 76653
No 388
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.15 E-value=0.38 Score=56.71 Aligned_cols=36 Identities=33% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 978 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~s 978 (1211)
++..|+|.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999998876 5666666654
No 389
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.13 E-value=1.4 Score=54.85 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHH-HHHHHh---CCcEEEEe
Q 000950 944 CKGILLFGPPGTGKTMLAK-AVATEA---GANFINIS 976 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LAr-AIA~el---g~~fi~I~ 976 (1211)
...+|+.||+|+|||..+. ++...+ +...+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3679999999999998773 333222 45555544
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.09 E-value=0.37 Score=55.21 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=44.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc----c---ccc-c-------hHHHHHHHHHHHHhcCCcE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 1006 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I~~s-eL~s----~---~~G-~-------~e~~I~~lF~~A~k~~PsI 1006 (1211)
..++|.||+|+|||||+++|+.... .-.+.++.. ++.- . ++- . ....++..+..+.+..|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998763 334555422 1110 0 110 0 1112455566677778999
Q ss_pred EEEccch
Q 000950 1007 VFVDEVD 1013 (1211)
Q Consensus 1007 LfIDEID 1013 (1211)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999984
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.08 E-value=0.26 Score=52.84 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg--~~fi~I 975 (1211)
.-|.|.|++|+||||+++.++..++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4589999999999999999999986 455443
No 392
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.90 E-value=2.8 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVAT 966 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~ 966 (1211)
+.+++.+|+|+|||..+-..+.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999986644443
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.77 E-value=0.44 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
++.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999876
No 394
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.71 E-value=0.28 Score=49.77 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||.|+|||+|++.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33458999999999999999999987
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.70 E-value=1.3 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|++|+|||+|+.+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999753
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.65 E-value=0.16 Score=56.50 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI 980 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~~seL 980 (1211)
.-|.|.||+|+||||+++.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3589999999999999999998775 44556665544
No 397
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.61 E-value=0.27 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
No 398
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.55 E-value=0.26 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-+.|.||+|+|||||++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999876
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.46 E-value=0.79 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcC
Q 000950 452 CPRILLSGPAGSEIYQETLAKALAKHFS 479 (1211)
Q Consensus 452 s~rILLsgp~GsE~Yqe~LaKALA~~f~ 479 (1211)
.+.|||+||+| ....+||+++|+.+.
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 47899999999 789999999998765
No 400
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.44 E-value=2.1 Score=47.48 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.0
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 000950 453 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 487 (1211)
Q Consensus 453 ~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 487 (1211)
+.|||.||+| ....+||||||+.++.++..+..
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 5799999999 79999999999999988776653
No 401
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.35 E-value=0.3 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN 971 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~ 971 (1211)
.-+-|.||+|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 448899999999999999999988754
No 402
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.29 E-value=0.58 Score=52.00 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEe
Q 000950 451 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 486 (1211)
Q Consensus 451 ~s~rILLsgp~GsE~Yqe~LaKALA~~f---~a~LLilD 486 (1211)
..+-+||.||+| ....+||+|+|+++ +.+++.++
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 346799999999 79999999999998 67776665
No 403
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.26 E-value=1.2 Score=50.79 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 977 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el----g~~fi~I~~ 977 (1211)
++||.+|+|+|||..+-.++... +..++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999887776554 555555554
No 404
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.19 E-value=0.9 Score=58.48 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVA 965 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA 965 (1211)
.-++|.||.|+|||++.+.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999984
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.06 E-value=1 Score=51.33 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
..|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 569999999999999999998776 55554444
No 406
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.98 E-value=0.22 Score=55.57 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
++.-|.|.|++|+|||||++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345689999999999999999998875
No 407
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.94 E-value=0.31 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||.+.|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999998764
No 408
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.90 E-value=1.8 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=17.5
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAV 964 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAI 964 (1211)
...+++.||+|+|||+.+...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 367999999999999987433
No 409
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.89 E-value=0.75 Score=54.43 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg---~~fi~I~ 976 (1211)
..|+|.|.||+|||++++.++..++ .+...++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 5699999999999999999999874 3445544
No 410
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.75 E-value=0.4 Score=56.06 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 978 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~~s 978 (1211)
.+||.+|+|+|||..+-.++...+..++.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887777766654
No 411
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.74 E-value=0.53 Score=47.49 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+...|+|.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999998643
No 412
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=87.69 E-value=2 Score=54.52 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..-++|.||.|+|||++.+.|+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345899999999999999999754
No 413
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.69 E-value=0.37 Score=51.42 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-GA 970 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-g~ 970 (1211)
.-|.|.|++|+||||+++.+++.+ +.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998 44
No 414
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.68 E-value=1.6 Score=49.31 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=32.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhc----CCCCCCCceEEEEcCCCChHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTMLA 961 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k----~~i~~Pp~gILL~GPpGTGKT~LA 961 (1211)
..+|++++-...+.+.|.+.- +..+.-+.. .......+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 356888877777777776521 111111111 001112367999999999999865
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.61 E-value=0.57 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
.-+.|.|++|+|||+|+..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998876 55554444
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.48 E-value=0.42 Score=49.92 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAGANF 972 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg~~f 972 (1211)
..++||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 5444
No 417
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.44 E-value=1.8 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVAT 966 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~ 966 (1211)
...|+|.|.+|+|||+|+.+|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35699999999999999999964
No 418
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.44 E-value=0.39 Score=58.64 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 979 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg----~~fi~I~~se 979 (1211)
.-|+|.|++|+|||++|+++++.++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4589999999999999999999885 7788887433
No 419
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.39 E-value=0.16 Score=55.09 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA-GANF 972 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el-g~~f 972 (1211)
++.-|.|.|++|+||||+++.|++.+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999998 5433
No 420
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.37 E-value=1 Score=50.88 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKA 963 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LArA 963 (1211)
..+|+++.-...+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 456777777777777666521 111111111000 01124699999999999986443
No 421
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.34 E-value=0.74 Score=52.70 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAV 964 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAI 964 (1211)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 46999999999999944444
No 422
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.30 E-value=1.3 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+++||.+|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 568999999999999887776554
No 423
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.94 E-value=0.38 Score=54.18 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
+...+.|.||+|+|||||++.|+..+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 4456999999999999999999988733
No 424
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.68 E-value=0.24 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVA-TEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA-~el 968 (1211)
.-+.|.||+|+|||||++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458899999999999999999 765
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.67 E-value=0.72 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
++.-++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44569999999999999999999876
No 426
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.66 E-value=1.7 Score=49.31 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAV 964 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~LArAI 964 (1211)
..+|+++.-.+.+.+.|.+.- +..+.-+....+ ....+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 346888776677777776531 111111111000 011256999999999999765443
No 427
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.43 E-value=0.63 Score=49.50 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
.-|.|.|++|+||||+++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458899999999999999999887 56665554
No 428
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.35 E-value=0.9 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~e 967 (1211)
...|.|.|++|+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 429
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.32 E-value=0.8 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|.|.|++|+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.20 E-value=0.4 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg 969 (1211)
-.+|+||.|+|||+|+++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999998775
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.61 E-value=0.4 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+-|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999998775
No 432
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.55 E-value=0.49 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=85.50 E-value=2.6 Score=42.40 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999854
No 434
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.35 E-value=0.5 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
++.-+-|.||+|+|||||++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 33458899999999999999999876
No 435
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.81 E-value=1.6 Score=47.29 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAK 962 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LAr 962 (1211)
+.+|+.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998644
No 436
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.76 E-value=2.3 Score=46.18 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
=.+++|+.|+|||+.+-..+..+ |..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999998555554443 55665554
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.65 E-value=0.52 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-+.|.|++|+|||+|++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998765
No 438
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.53 E-value=0.55 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 439
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.37 E-value=4.5 Score=45.00 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcChhhhhccC-hhhHHHHHHHHhcC-CCCEEEEeeccC
Q 000950 649 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHTQ 706 (1211)
Q Consensus 649 ~~~~l~evl~sesk~~P~Ilf~~die~~l~~~-~~~~~~i~s~L~~L-~g~VvVIgs~~~ 706 (1211)
+++.+++.+.. ...|.||+|||++.+.... .+....+...++.+ ..++.+|++++.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 45666666654 2359999999999966543 66666777777665 448888888884
No 440
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=84.35 E-value=1.2 Score=52.02 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhc----CCCCCCCceEEEEcCCCChHHHHH
Q 000950 906 VTFDDIGALENVKDTLKELVMLPLQRPELFCK----GQLTKPCKGILLFGPPGTGKTMLA 961 (1211)
Q Consensus 906 ~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k----~~i~~Pp~gILL~GPpGTGKT~LA 961 (1211)
.+|.++.-...+.+.|.+. .+..+.-+.. ..+..+.+.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 4677777667766666541 1111111111 001123467999999999999863
No 441
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=84.34 E-value=0.49 Score=50.57 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 946 GILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.|-|+|..|||||++++.++. +|++++..|
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 589999999999999999988 999887665
No 442
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.20 E-value=0.71 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
....|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.19 E-value=0.5 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||+|+|||||.+.|+...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33458999999999999999998655
No 444
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.18 E-value=1.9 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-+.|.||||+|||+|.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999999998765
No 445
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.08 E-value=0.65 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 446
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.03 E-value=0.91 Score=46.05 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCCeEEEEcChhhhhccChhhHHHHHHHHhcCCCCEEEEeeccC
Q 000950 662 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 706 (1211)
Q Consensus 662 k~~P~Ilf~~die~~l~~~~~~~~~i~s~L~~L~g~VvVIgs~~~ 706 (1211)
...+.||+|||++.+ . .+..+.|...++....++++|++++.
T Consensus 100 ~~~~~vliiDe~~~l-~--~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 100 GAPFKIIFLDEADAL-T--ADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp TCSCEEEEEETGGGS-C--HHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred ccCceEEEEeChhhc-C--HHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 367899999999994 3 23445677778877888888888873
No 447
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.00 E-value=0.51 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||+|+|||||++.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998654
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.98 E-value=0.79 Score=51.97 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+.-+-|.||+|+||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999998875
No 449
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.80 E-value=3.3 Score=45.94 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=36.7
Q ss_pred ccccccccccchhhHHHHHHhhhhhcccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 000950 410 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 480 (1211)
Q Consensus 410 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a 480 (1211)
..+|++|.-. ++.+..|..+.... ..+-|||.||+| ....+|||+||+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3578886443 66666655544321 123499999999 7899999999999864
No 450
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=83.70 E-value=0.52 Score=57.90 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
..||.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877776554
No 451
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.65 E-value=1.1 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..|+|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999875
No 452
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.59 E-value=0.71 Score=47.87 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 453
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=83.48 E-value=0.82 Score=53.42 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHH-HHHHHH---hCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLA-KAVATE---AGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LA-rAIA~e---lg~~fi~I~ 976 (1211)
+.+|+.||+|+|||..+ .++.+. .+...+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 47999999999999965 444322 244444444
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.38 E-value=0.48 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-+.|.||+|+|||||.+.|+...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998654
No 455
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.23 E-value=6.3 Score=45.70 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHH
Q 000950 905 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML 960 (1211)
Q Consensus 905 ~~sfddI~Gle~vk~~L~e~V~~pL~~pelf~k~~i--~~Pp~gILL~GPpGTGKT~L 960 (1211)
..+|++++-.+.+.+.|.+. .+..|.-+.+..+ ....+.+++.+|+|+|||..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKS---GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 45788877667777776552 1222211111100 01125799999999999984
No 456
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=83.22 E-value=2.7 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=18.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+.+|+.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999998766555433
No 457
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.21 E-value=0.96 Score=48.70 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el-------g~~fi~I~ 976 (1211)
.-|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 458999999999999999999877 55665444
No 458
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=83.19 E-value=2 Score=56.38 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~ 976 (1211)
..+|+.||+|+|||..+...+... +...+.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~ 234 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTS 234 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 479999999999999765544333 44444444
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.10 E-value=0.69 Score=45.02 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=83.03 E-value=0.63 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..+.|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 461
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.00 E-value=1.2 Score=47.69 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 976 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~fi~I~ 976 (1211)
.-|.|.|++|+|||++++.+++.++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 45899999999999999999999987544333
No 462
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.97 E-value=0.66 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||.+.|+....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999997653
No 463
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.82 E-value=0.59 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||+|+|||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998755
No 464
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=82.79 E-value=1.4 Score=47.97 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000950 946 GILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~e 967 (1211)
.|.|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999754
No 465
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.71 E-value=0.67 Score=52.48 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 973 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg~~fi 973 (1211)
...++||.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3468999999999999999999775 55443
No 466
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=82.71 E-value=0.61 Score=56.15 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGA 970 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~ 970 (1211)
..|+|.|.+|+||||+++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999999975
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=82.67 E-value=0.63 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 468
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.64 E-value=0.69 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 469
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.60 E-value=1.1 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 977 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el---g~~fi~I~~ 977 (1211)
..++++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3579999999999999999998665 667777774
No 470
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.58 E-value=0.71 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAGAN 971 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg~~ 971 (1211)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 569999999999999999999987654
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.54 E-value=0.71 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 472
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.47 E-value=0.63 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||.+.|+....
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4588999999999999999987653
No 473
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.41 E-value=0.76 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 474
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.36 E-value=3 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
...+.|.|++|+|||+++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998765
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=82.35 E-value=0.53 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..+.|.|++|+|||||++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999876
No 476
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.31 E-value=0.48 Score=50.23 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
.-+.|.||+|+|||||++.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.22 E-value=0.75 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~e 967 (1211)
+..-+.|.||.|+|||||++.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345899999999999999999975
No 478
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.20 E-value=1 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 000950 944 CKGILLFGPPGTGKTMLAKAVAT 966 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~ 966 (1211)
...|+|.|++|+|||+|+.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999975
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.07 E-value=0.67 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||+|+|||||++.|+...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33458999999999999999998754
No 480
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.02 E-value=0.8 Score=44.54 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
-.|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999997543
No 481
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=81.99 E-value=0.6 Score=56.73 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 980 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg----~~fi~I~~seL 980 (1211)
...+.|.|++|+|||||+++|+..++ ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35689999999999999999999884 34545665443
No 482
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.96 E-value=0.71 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
.-+.|.||+|+|||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999974
No 483
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=81.81 E-value=1.7 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
.-++|.||.|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45899999999999999999753
No 484
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=81.76 E-value=0.7 Score=56.64 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+-++|+|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999888876554
No 485
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.70 E-value=0.64 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~el 968 (1211)
..-+.|.||.|+|||||.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998765
No 486
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.68 E-value=0.7 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334589999999999999999987653
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.57 E-value=0.64 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||.+.|+....
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999987653
No 488
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.54 E-value=0.62 Score=49.63 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-+.|.||.|+|||||.+.|+...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998655
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=81.51 E-value=0.89 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|++|+|||+|..+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 490
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.45 E-value=0.79 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000950 946 GILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 946 gILL~GPpGTGKT~LArAIA~el 968 (1211)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 491
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.45 E-value=0.86 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
-.|++.|++|+|||+|+.++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 492
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.40 E-value=0.66 Score=50.36 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 944 CKGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 944 p~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
..-+.|.||+|+|||||++.|+....
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34589999999999999999987653
No 493
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.39 E-value=2.2 Score=45.02 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 000950 945 KGILLFGPPGTGKTMLA 961 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LA 961 (1211)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 494
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.39 E-value=0.8 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999764
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.28 E-value=0.74 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEAG 969 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~elg 969 (1211)
.-+.|.||+|+|||||++.|+....
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4588999999999999999987653
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.27 E-value=0.78 Score=49.70 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCc-EEEE
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA---GAN-FINI 975 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el---g~~-fi~I 975 (1211)
.-|.|.|++|+|||++++.++..+ +.+ ++..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 458999999999999999999877 555 4433
No 497
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.21 E-value=0.87 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 498
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.17 E-value=0.75 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000950 943 PCKGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 943 Pp~gILL~GPpGTGKT~LArAIA~el 968 (1211)
+..-+.|.||.|+|||||.+.|+...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33458899999999999999998655
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.17 E-value=1.1 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 000950 945 KGILLFGPPGTGKTMLAKAVATEA 968 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~el 968 (1211)
.-++|.|+.|+|||||.+.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 358999999999999999999754
No 500
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=81.12 E-value=3.6 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 000950 945 KGILLFGPPGTGKTMLAKAVATE 967 (1211)
Q Consensus 945 ~gILL~GPpGTGKT~LArAIA~e 967 (1211)
..|+|.|.+|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
Done!