Query 000951
Match_columns 1211
No_of_seqs 880 out of 5468
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 11:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-111 7E-116 1066.2 73.0 791 312-1170 48-843 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.2E-86 4.9E-91 818.9 51.0 592 522-1170 84-681 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 6.2E-82 1.3E-86 799.0 75.9 676 103-806 49-726 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.2E-67 1.3E-71 643.0 71.5 547 136-701 366-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.1E-67 1.5E-71 642.4 71.5 543 56-631 372-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2E-59 4.3E-64 579.1 53.9 476 207-700 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-50 8.9E-55 524.9 115.5 874 104-1008 21-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-49 2.4E-54 520.9 115.3 876 139-1044 21-898 (899)
9 PRK11447 cellulose synthase su 100.0 3.6E-28 7.8E-33 315.4 82.1 673 286-1015 34-746 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-27 2.3E-32 311.1 79.2 653 362-1050 40-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.9E-25 6.2E-30 273.1 75.2 659 294-1008 58-738 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.3E-24 2.8E-29 267.3 76.4 679 223-996 57-759 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 8.9E-28 1.9E-32 257.0 38.9 450 529-1000 52-509 (966)
14 KOG2002 TPR-containing nuclear 100.0 1.9E-24 4.2E-29 245.2 67.1 612 471-1119 146-801 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 1.4E-27 3.1E-32 255.4 38.0 459 564-1045 52-522 (966)
16 KOG2002 TPR-containing nuclear 100.0 7.5E-22 1.6E-26 224.4 67.4 554 401-969 146-739 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-19 2.8E-24 221.3 53.5 429 527-975 129-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-19 4.1E-24 219.9 51.6 427 562-1009 129-570 (615)
19 PRK15174 Vi polysaccharide exp 99.9 4.6E-19 1E-23 215.0 44.1 322 640-973 52-379 (656)
20 PRK15174 Vi polysaccharide exp 99.9 8.3E-19 1.8E-23 212.8 43.4 356 642-1010 17-381 (656)
21 PRK11788 tetratricopeptide rep 99.9 2.5E-19 5.4E-24 208.2 35.5 299 710-1017 44-354 (389)
22 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.5E-22 207.6 50.0 421 527-990 17-469 (765)
23 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.2E-22 206.7 50.5 414 594-1025 14-469 (765)
24 PF14432 DYW_deaminase: DYW fa 99.9 2.4E-23 5.2E-28 186.5 -0.9 101 1049-1170 8-110 (116)
25 PRK11788 tetratricopeptide rep 99.8 1.1E-18 2.4E-23 202.8 34.8 258 640-903 45-309 (389)
26 KOG2076 RNA polymerase III tra 99.8 1.1E-14 2.3E-19 166.0 64.8 396 246-656 140-552 (895)
27 KOG2076 RNA polymerase III tra 99.8 1.1E-14 2.4E-19 165.9 64.1 660 321-1005 145-890 (895)
28 KOG0495 HAT repeat protein [RN 99.8 2E-13 4.3E-18 149.1 67.6 469 536-1026 417-895 (913)
29 PRK14574 hmsH outer membrane p 99.8 1.4E-15 3E-20 184.1 54.2 450 500-986 44-522 (822)
30 KOG0495 HAT repeat protein [RN 99.8 3.6E-13 7.9E-18 147.0 65.5 462 500-982 416-885 (913)
31 PRK14574 hmsH outer membrane p 99.8 2E-15 4.3E-20 182.8 54.1 453 535-1023 44-524 (822)
32 KOG4422 Uncharacterized conser 99.8 1.8E-15 3.9E-20 156.6 43.7 433 116-586 126-587 (625)
33 KOG4318 Bicoid mRNA stability 99.8 3.3E-13 7.1E-18 152.6 55.3 270 128-435 13-286 (1088)
34 KOG4318 Bicoid mRNA stability 99.7 2.6E-13 5.5E-18 153.5 49.9 759 197-1030 12-828 (1088)
35 KOG4422 Uncharacterized conser 99.7 2E-13 4.3E-18 141.8 43.6 361 314-696 206-591 (625)
36 KOG2003 TPR repeat-containing 99.7 8.6E-14 1.9E-18 144.9 40.4 488 423-995 204-708 (840)
37 KOG0985 Vesicle coat protein c 99.7 5.2E-10 1.1E-14 127.9 73.3 844 112-1040 367-1378(1666)
38 KOG1126 DNA-binding cell divis 99.7 2.9E-15 6.4E-20 165.5 26.8 285 715-1016 333-624 (638)
39 KOG0547 Translocase of outer m 99.7 1.4E-13 3.1E-18 145.6 36.7 220 782-1009 337-565 (606)
40 KOG2003 TPR repeat-containing 99.7 6E-14 1.3E-18 146.0 33.3 453 531-1009 207-688 (840)
41 KOG0547 Translocase of outer m 99.7 1.6E-13 3.5E-18 145.3 36.7 225 743-975 333-566 (606)
42 KOG1173 Anaphase-promoting com 99.7 4.8E-13 1E-17 144.8 39.3 281 697-988 240-529 (611)
43 KOG1155 Anaphase-promoting com 99.7 6.3E-12 1.4E-16 132.7 45.2 385 520-940 159-553 (559)
44 KOG4162 Predicted calmodulin-b 99.7 2.8E-11 6.1E-16 136.2 52.2 429 524-975 322-783 (799)
45 KOG1915 Cell cycle control pro 99.7 4.6E-11 9.9E-16 126.1 50.2 438 501-957 84-551 (677)
46 KOG3616 Selective LIM binding 99.6 7.1E-09 1.5E-13 114.8 66.4 757 112-1001 564-1382(1636)
47 KOG1155 Anaphase-promoting com 99.6 5.3E-12 1.1E-16 133.2 40.3 195 808-1007 332-533 (559)
48 KOG4162 Predicted calmodulin-b 99.6 1.4E-10 3E-15 130.6 51.7 130 913-1047 652-785 (799)
49 KOG1126 DNA-binding cell divis 99.6 8.3E-14 1.8E-18 154.2 25.4 201 770-979 420-622 (638)
50 KOG0985 Vesicle coat protein c 99.6 6.2E-08 1.3E-12 111.5 74.8 730 110-923 515-1325(1666)
51 KOG1915 Cell cycle control pro 99.6 9.9E-10 2.2E-14 116.3 52.0 422 433-869 86-535 (677)
52 TIGR00540 hemY_coli hemY prote 99.6 3.1E-12 6.6E-17 147.6 36.6 288 713-1009 96-398 (409)
53 KOG1173 Anaphase-promoting com 99.6 2.5E-11 5.4E-16 131.8 39.5 281 733-1025 241-531 (611)
54 PF13429 TPR_15: Tetratricopep 99.6 7.9E-15 1.7E-19 160.7 12.9 255 708-970 15-272 (280)
55 KOG1127 TPR repeat-containing 99.6 9.6E-09 2.1E-13 118.6 61.0 663 329-1026 472-1190(1238)
56 KOG2047 mRNA splicing factor [ 99.6 7.7E-08 1.7E-12 106.2 66.5 323 524-856 348-709 (835)
57 KOG1127 TPR repeat-containing 99.6 1.6E-08 3.5E-13 116.8 61.6 431 576-1033 474-940 (1238)
58 KOG2047 mRNA splicing factor [ 99.6 8.7E-08 1.9E-12 105.8 63.5 571 141-751 103-709 (835)
59 PF13429 TPR_15: Tetratricopep 99.5 3E-14 6.4E-19 156.1 13.1 261 741-1009 13-276 (280)
60 TIGR00540 hemY_coli hemY prote 99.5 8.1E-12 1.8E-16 144.1 33.7 129 840-971 262-395 (409)
61 PRK10747 putative protoheme IX 99.5 2E-11 4.4E-16 139.9 34.1 250 747-1008 129-388 (398)
62 PRK10747 putative protoheme IX 99.5 2.6E-11 5.6E-16 139.0 34.6 250 677-939 129-389 (398)
63 COG2956 Predicted N-acetylgluc 99.5 3.7E-11 8.1E-16 121.3 30.1 288 714-1013 48-350 (389)
64 KOG3616 Selective LIM binding 99.5 3.2E-08 7E-13 109.7 55.1 475 295-869 546-1023(1636)
65 COG2956 Predicted N-acetylgluc 99.5 1.3E-10 2.9E-15 117.4 31.5 289 643-939 48-346 (389)
66 KOG1156 N-terminal acetyltrans 99.5 3.1E-09 6.8E-14 117.6 44.2 463 528-1006 11-507 (700)
67 KOG3785 Uncharacterized conser 99.5 7E-09 1.5E-13 105.8 42.0 454 254-740 31-498 (557)
68 KOG3785 Uncharacterized conser 99.4 1E-08 2.2E-13 104.6 42.7 462 533-1030 65-535 (557)
69 KOG1174 Anaphase-promoting com 99.4 3.5E-09 7.5E-14 110.4 39.3 401 594-1016 96-504 (564)
70 KOG1156 N-terminal acetyltrans 99.4 6E-09 1.3E-13 115.4 42.7 470 467-972 19-508 (700)
71 KOG0548 Molecular co-chaperone 99.4 7.7E-10 1.7E-14 120.2 34.0 389 567-975 9-455 (539)
72 PRK12370 invasion protein regu 99.4 5.4E-11 1.2E-15 142.6 27.5 246 751-1008 276-533 (553)
73 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.6E-14 114.5 32.9 281 679-970 97-385 (400)
74 PRK12370 invasion protein regu 99.4 7.2E-11 1.6E-15 141.6 27.6 215 785-1009 275-501 (553)
75 KOG1840 Kinesin light chain [C 99.4 1.6E-10 3.5E-15 130.7 28.3 236 773-1008 201-477 (508)
76 KOG1174 Anaphase-promoting com 99.4 3E-08 6.5E-13 103.6 41.0 298 640-949 206-508 (564)
77 KOG1129 TPR repeat-containing 99.4 5.1E-11 1.1E-15 119.9 19.8 122 850-973 333-456 (478)
78 KOG1129 TPR repeat-containing 99.4 6.5E-11 1.4E-15 119.1 20.3 231 705-942 227-460 (478)
79 COG3071 HemY Uncharacterized e 99.4 3.6E-09 7.9E-14 111.0 33.8 289 643-944 97-394 (400)
80 TIGR02521 type_IV_pilW type IV 99.3 2E-10 4.4E-15 122.9 25.3 197 806-1008 31-230 (234)
81 TIGR02521 type_IV_pilW type IV 99.3 4.4E-10 9.6E-15 120.2 26.2 195 775-973 35-230 (234)
82 KOG1840 Kinesin light chain [C 99.3 5.7E-10 1.2E-14 126.3 27.4 195 777-971 247-475 (508)
83 KOG0624 dsRNA-activated protei 99.3 2.9E-08 6.3E-13 101.1 33.6 298 595-905 38-370 (504)
84 KOG3617 WD40 and TPR repeat-co 99.3 3.2E-06 6.9E-11 95.9 52.6 344 291-720 811-1190(1416)
85 KOG0548 Molecular co-chaperone 99.3 1.2E-08 2.7E-13 111.0 32.6 236 706-958 229-472 (539)
86 COG3063 PilF Tfp pilus assembl 99.3 2.1E-09 4.4E-14 104.3 23.6 202 808-1016 37-240 (250)
87 KOG3617 WD40 and TPR repeat-co 99.3 1.2E-07 2.6E-12 107.0 40.5 240 279-552 725-994 (1416)
88 KOG0624 dsRNA-activated protei 99.2 2.9E-08 6.3E-13 101.1 31.7 323 633-1009 41-369 (504)
89 PRK11189 lipoprotein NlpI; Pro 99.2 2.4E-09 5.3E-14 117.3 26.6 125 703-833 66-192 (296)
90 PRK11189 lipoprotein NlpI; Pro 99.2 3.7E-09 8E-14 115.9 26.4 94 737-834 65-160 (296)
91 PF12569 NARP1: NMDA receptor- 99.2 4.3E-08 9.4E-13 112.9 32.4 129 842-973 195-332 (517)
92 KOG4340 Uncharacterized conser 99.2 2.4E-08 5.1E-13 99.7 25.7 282 605-900 20-334 (459)
93 PF13041 PPR_2: PPR repeat fam 99.1 8.3E-11 1.8E-15 89.2 6.4 49 208-256 1-49 (50)
94 PF12569 NARP1: NMDA receptor- 99.1 6.2E-08 1.3E-12 111.7 32.7 290 710-1009 13-333 (517)
95 COG3063 PilF Tfp pilus assembl 99.1 1.7E-08 3.7E-13 98.1 23.4 196 738-939 37-235 (250)
96 PF13041 PPR_2: PPR repeat fam 99.1 8.9E-11 1.9E-15 89.0 6.4 49 313-361 1-49 (50)
97 KOG2376 Signal recognition par 99.1 1.3E-06 2.9E-11 96.2 39.7 224 216-455 18-258 (652)
98 KOG1125 TPR repeat-containing 99.1 5.7E-09 1.2E-13 114.5 21.3 249 778-1033 292-559 (579)
99 KOG2376 Signal recognition par 99.1 4.2E-06 9.1E-11 92.4 41.6 120 810-933 380-513 (652)
100 cd05804 StaR_like StaR_like; a 99.0 4.3E-07 9.4E-12 104.0 34.4 200 736-941 6-216 (355)
101 PLN02789 farnesyltranstransfer 99.0 1.3E-07 2.8E-12 103.0 26.6 203 782-993 48-267 (320)
102 KOG1125 TPR repeat-containing 99.0 3.6E-08 7.8E-13 108.4 21.4 258 711-1003 295-564 (579)
103 PLN02789 farnesyltranstransfer 99.0 3.5E-07 7.6E-12 99.7 27.2 206 745-958 46-267 (320)
104 cd05804 StaR_like StaR_like; a 99.0 2.3E-06 4.9E-11 98.1 35.6 97 736-834 114-214 (355)
105 KOG4340 Uncharacterized conser 98.9 2.5E-06 5.3E-11 85.7 27.6 315 248-585 13-335 (459)
106 PRK04841 transcriptional regul 98.8 8E-06 1.7E-10 106.4 38.9 265 745-1009 461-759 (903)
107 PRK15359 type III secretion sy 98.8 1.6E-07 3.4E-12 90.2 15.1 113 862-982 14-126 (144)
108 PF04733 Coatomer_E: Coatomer 98.8 9.6E-08 2.1E-12 102.7 14.9 149 815-974 111-264 (290)
109 PRK04841 transcriptional regul 98.8 1.8E-05 3.9E-10 103.1 38.5 265 711-975 462-760 (903)
110 PRK15359 type III secretion sy 98.8 2.5E-07 5.5E-12 88.8 15.6 123 827-957 14-137 (144)
111 KOG1128 Uncharacterized conser 98.8 4.6E-07 1E-11 102.3 19.5 221 662-904 394-615 (777)
112 TIGR03302 OM_YfiO outer membra 98.8 4.9E-07 1.1E-11 96.4 19.4 184 805-1009 32-231 (235)
113 KOG2053 Mitochondrial inherita 98.7 0.0019 4E-08 75.8 49.2 161 773-938 438-606 (932)
114 PRK10370 formate-dependent nit 98.7 7.7E-07 1.7E-11 90.4 18.0 118 854-975 52-173 (198)
115 PRK15179 Vi polysaccharide bio 98.7 1.8E-06 4E-11 103.6 24.0 134 802-940 82-217 (694)
116 KOG1128 Uncharacterized conser 98.7 1E-06 2.2E-11 99.6 19.6 221 767-1009 394-615 (777)
117 TIGR03302 OM_YfiO outer membra 98.7 1.6E-06 3.5E-11 92.4 20.8 59 916-974 171-231 (235)
118 PRK10370 formate-dependent nit 98.7 1.5E-06 3.3E-11 88.3 18.4 130 889-1024 52-185 (198)
119 KOG0550 Molecular chaperone (D 98.7 1.4E-06 3.1E-11 91.8 18.2 186 842-1031 169-372 (486)
120 PRK15179 Vi polysaccharide bio 98.6 4.6E-06 1E-10 100.3 25.2 143 767-915 82-226 (694)
121 COG5010 TadD Flp pilus assembl 98.6 4.3E-06 9.4E-11 83.8 19.9 153 845-1003 70-224 (257)
122 PF04733 Coatomer_E: Coatomer 98.6 2.2E-06 4.8E-11 92.3 19.4 245 746-1008 11-263 (290)
123 COG4783 Putative Zn-dependent 98.6 7.6E-06 1.6E-10 89.1 23.1 163 841-1026 306-469 (484)
124 COG5010 TadD Flp pilus assembl 98.6 6.8E-06 1.5E-10 82.4 20.8 154 810-968 70-224 (257)
125 KOG1914 mRNA cleavage and poly 98.6 0.0024 5.3E-08 70.4 41.5 82 100-185 15-96 (656)
126 KOG2053 Mitochondrial inherita 98.6 0.0042 9.1E-08 73.0 51.2 222 66-310 21-256 (932)
127 KOG1914 mRNA cleavage and poly 98.6 0.002 4.4E-08 71.1 40.1 409 137-552 17-499 (656)
128 PRK14720 transcript cleavage f 98.5 2.8E-05 6.1E-10 94.1 27.4 147 700-869 30-177 (906)
129 KOG3060 Uncharacterized conser 98.5 4.1E-05 9E-10 75.9 23.1 197 750-952 26-231 (289)
130 KOG0550 Molecular chaperone (D 98.5 4.9E-05 1.1E-09 80.5 25.0 274 602-905 56-350 (486)
131 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 63.9 4.2 32 275-306 2-33 (34)
132 PRK14720 transcript cleavage f 98.5 3E-05 6.4E-10 93.9 26.6 238 663-957 28-268 (906)
133 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3.1E-12 63.8 4.0 32 205-236 2-33 (34)
134 KOG1070 rRNA processing protei 98.5 5.2E-05 1.1E-09 91.8 27.0 203 735-944 1457-1667(1710)
135 TIGR02552 LcrH_SycD type III s 98.4 5E-06 1.1E-10 79.7 14.6 108 864-975 6-114 (135)
136 KOG1130 Predicted G-alpha GTPa 98.4 1.3E-06 2.8E-11 91.5 9.6 286 709-1009 25-343 (639)
137 KOG3081 Vesicle coat complex C 98.4 0.00015 3.2E-09 72.7 22.7 111 852-967 148-262 (299)
138 PRK15363 pathogenicity island 98.4 1E-05 2.2E-10 75.8 13.8 98 909-1009 33-131 (157)
139 KOG1130 Predicted G-alpha GTPa 98.3 4.7E-06 1E-10 87.4 12.5 262 640-903 27-342 (639)
140 TIGR02552 LcrH_SycD type III s 98.3 1.5E-05 3.3E-10 76.3 14.6 116 897-1018 4-120 (135)
141 KOG1070 rRNA processing protei 98.3 0.00022 4.8E-09 86.6 26.8 202 807-1014 1459-1667(1710)
142 KOG0553 TPR repeat-containing 98.3 7.7E-06 1.7E-10 83.6 12.5 132 848-983 88-223 (304)
143 KOG3081 Vesicle coat complex C 98.3 0.00042 9E-09 69.6 23.4 253 781-1050 18-275 (299)
144 COG4783 Putative Zn-dependent 98.2 0.00026 5.6E-09 77.5 23.4 129 877-1009 307-436 (484)
145 PF07079 DUF1347: Protein of u 98.2 0.015 3.2E-07 63.2 46.3 202 773-985 300-529 (549)
146 KOG3060 Uncharacterized conser 98.2 0.0005 1.1E-08 68.5 22.6 152 852-1009 63-219 (289)
147 PRK15363 pathogenicity island 98.1 3.5E-05 7.7E-10 72.2 12.1 102 872-975 29-132 (157)
148 KOG0553 TPR repeat-containing 98.1 2.9E-05 6.3E-10 79.5 12.4 130 883-1016 88-221 (304)
149 PF09976 TPR_21: Tetratricopep 98.1 8.4E-05 1.8E-09 71.8 15.3 115 889-1006 24-143 (145)
150 PF14938 SNAP: Soluble NSF att 98.1 0.00073 1.6E-08 73.6 23.6 91 918-1008 121-223 (282)
151 PF09976 TPR_21: Tetratricopep 98.1 8.7E-05 1.9E-09 71.7 14.4 90 879-970 51-142 (145)
152 COG4700 Uncharacterized protei 98.0 0.00093 2E-08 63.0 18.7 135 872-1008 85-220 (251)
153 PRK02603 photosystem I assembl 98.0 0.00018 4E-09 71.9 15.0 85 877-962 36-122 (172)
154 COG3898 Uncharacterized membra 98.0 0.042 9.2E-07 58.5 32.9 281 714-1009 97-391 (531)
155 PLN03088 SGT1, suppressor of 97.9 0.00019 4.2E-09 80.6 15.0 97 882-982 8-104 (356)
156 PLN03088 SGT1, suppressor of 97.9 0.00018 3.8E-09 80.9 14.6 104 848-955 9-113 (356)
157 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00028 6.1E-09 78.6 15.2 87 882-970 206-292 (395)
158 KOG2041 WD40 repeat protein [G 97.9 0.056 1.2E-06 61.6 32.4 327 608-1008 747-1084(1189)
159 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00024 5.1E-09 66.2 12.7 62 879-940 42-105 (119)
160 PF14938 SNAP: Soluble NSF att 97.9 0.0019 4E-08 70.5 21.4 167 744-941 43-226 (282)
161 CHL00033 ycf3 photosystem I as 97.8 0.00029 6.2E-09 70.3 13.5 91 877-968 36-135 (168)
162 PRK02603 photosystem I assembl 97.8 0.00056 1.2E-08 68.4 15.5 112 808-942 37-151 (172)
163 cd00189 TPR Tetratricopeptide 97.8 0.0002 4.4E-09 63.3 11.3 88 881-970 5-92 (100)
164 COG3898 Uncharacterized membra 97.8 0.076 1.7E-06 56.6 31.9 281 643-940 97-392 (531)
165 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00036 7.8E-09 64.9 12.8 102 878-981 4-109 (119)
166 PF12895 Apc3: Anaphase-promot 97.8 4.1E-05 8.9E-10 65.8 5.8 78 925-1005 3-82 (84)
167 PF12895 Apc3: Anaphase-promot 97.8 4.9E-05 1.1E-09 65.3 6.2 81 889-971 2-83 (84)
168 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.2E-09 59.7 7.2 62 917-981 3-64 (65)
169 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00056 1.2E-08 76.2 15.2 122 879-1007 172-294 (395)
170 cd00189 TPR Tetratricopeptide 97.7 0.0003 6.6E-09 62.1 10.9 95 844-941 3-98 (100)
171 TIGR00756 PPR pentatricopeptid 97.7 4.7E-05 1E-09 52.5 4.2 33 317-349 2-34 (35)
172 TIGR00756 PPR pentatricopeptid 97.7 4.7E-05 1E-09 52.6 4.2 33 212-244 2-34 (35)
173 PRK10153 DNA-binding transcrip 97.7 0.001 2.2E-08 77.9 17.6 124 857-986 358-491 (517)
174 PF12688 TPR_5: Tetratrico pep 97.7 0.0012 2.6E-08 60.1 14.0 93 845-938 5-102 (120)
175 COG4235 Cytochrome c biogenesi 97.7 0.0011 2.4E-08 68.8 15.2 102 872-975 151-256 (287)
176 CHL00033 ycf3 photosystem I as 97.7 0.00052 1.1E-08 68.4 12.7 114 892-1007 15-139 (168)
177 PF13414 TPR_11: TPR repeat; P 97.7 0.00013 2.9E-09 59.9 6.8 63 911-974 3-66 (69)
178 KOG1941 Acetylcholine receptor 97.6 0.00098 2.1E-08 69.5 13.9 32 1141-1177 405-436 (518)
179 PF07079 DUF1347: Protein of u 97.6 0.16 3.5E-06 55.6 48.4 183 388-592 131-330 (549)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.0015 3.2E-08 59.5 13.4 91 879-969 4-98 (120)
181 COG4700 Uncharacterized protei 97.6 0.0099 2.1E-07 56.4 18.6 125 840-968 88-215 (251)
182 COG4235 Cytochrome c biogenesi 97.5 0.0028 6.1E-08 65.9 15.6 120 899-1024 145-268 (287)
183 KOG1941 Acetylcholine receptor 97.5 0.02 4.3E-07 60.2 21.0 126 845-970 126-270 (518)
184 PF13812 PPR_3: Pentatricopept 97.5 0.00016 3.5E-09 49.4 4.3 32 212-243 3-34 (34)
185 PF13812 PPR_3: Pentatricopept 97.5 0.00017 3.8E-09 49.2 4.3 32 317-348 3-34 (34)
186 PF13414 TPR_11: TPR repeat; P 97.5 0.00037 7.9E-09 57.2 7.0 63 878-941 5-68 (69)
187 PRK10153 DNA-binding transcrip 97.4 0.0062 1.3E-07 71.5 18.9 84 858-943 401-485 (517)
188 PF13432 TPR_16: Tetratricopep 97.4 0.0006 1.3E-08 55.1 7.0 60 882-942 3-62 (65)
189 PF14559 TPR_19: Tetratricopep 97.4 0.00046 1E-08 56.5 6.3 60 923-985 3-62 (68)
190 KOG2796 Uncharacterized conser 97.3 0.042 9E-07 55.3 20.1 150 823-982 166-320 (366)
191 PF01535 PPR: PPR repeat; Int 97.3 0.00027 5.9E-09 47.0 3.4 29 317-345 2-30 (31)
192 PRK10866 outer membrane biogen 97.3 0.063 1.4E-06 56.6 22.6 55 916-970 180-236 (243)
193 PF01535 PPR: PPR repeat; Int 97.3 0.00029 6.2E-09 46.9 3.3 29 212-240 2-30 (31)
194 PRK15331 chaperone protein Sic 97.3 0.012 2.6E-07 55.8 15.0 94 913-1009 39-133 (165)
195 PRK15331 chaperone protein Sic 97.2 0.0045 9.8E-08 58.6 11.9 96 877-974 38-133 (165)
196 PF08579 RPM2: Mitochondrial r 97.2 0.0051 1.1E-07 53.5 11.1 78 213-290 28-114 (120)
197 PF10037 MRP-S27: Mitochondria 97.2 0.0041 8.8E-08 69.8 13.4 122 242-363 63-186 (429)
198 COG0457 NrfG FOG: TPR repeat [ 97.2 0.37 8E-06 50.9 29.1 199 807-1009 60-264 (291)
199 PF10037 MRP-S27: Mitochondria 97.2 0.0052 1.1E-07 68.9 13.9 124 345-468 61-186 (429)
200 PRK10866 outer membrane biogen 97.2 0.03 6.6E-07 59.0 19.1 180 805-1007 31-238 (243)
201 KOG2796 Uncharacterized conser 97.2 0.073 1.6E-06 53.6 19.8 136 808-944 179-319 (366)
202 KOG2041 WD40 repeat protein [G 97.1 0.79 1.7E-05 52.8 31.6 30 417-446 689-718 (1189)
203 KOG1538 Uncharacterized conser 97.1 0.043 9.3E-07 61.9 19.9 226 543-869 618-845 (1081)
204 PRK10803 tol-pal system protei 97.1 0.0071 1.5E-07 64.2 13.2 27 913-939 182-208 (263)
205 PRK10803 tol-pal system protei 97.1 0.0059 1.3E-07 64.8 12.4 90 852-943 154-249 (263)
206 PF14559 TPR_19: Tetratricopep 97.0 0.0016 3.4E-08 53.3 6.2 53 888-941 3-55 (68)
207 KOG0543 FKBP-type peptidyl-pro 97.0 0.0088 1.9E-07 64.6 13.3 94 913-1009 259-354 (397)
208 PF13525 YfiO: Outer membrane 97.0 0.13 2.8E-06 52.9 21.7 52 916-967 146-199 (203)
209 COG0457 NrfG FOG: TPR repeat [ 97.0 0.58 1.3E-05 49.4 29.8 63 737-799 60-123 (291)
210 PF08579 RPM2: Mitochondrial r 97.0 0.011 2.4E-07 51.5 10.6 30 402-431 86-115 (120)
211 PF13525 YfiO: Outer membrane 97.0 0.029 6.4E-07 57.6 16.2 58 812-869 11-70 (203)
212 KOG0543 FKBP-type peptidyl-pro 97.0 0.011 2.4E-07 63.8 13.2 139 881-1044 213-353 (397)
213 PF13371 TPR_9: Tetratricopept 97.0 0.0035 7.5E-08 52.1 7.7 61 919-982 3-63 (73)
214 KOG1538 Uncharacterized conser 96.9 0.19 4.1E-06 57.0 22.5 81 841-934 747-827 (1081)
215 PF05843 Suf: Suppressor of fo 96.8 0.038 8.3E-07 59.9 16.5 143 842-989 2-148 (280)
216 PF13281 DUF4071: Domain of un 96.8 0.17 3.7E-06 55.8 20.4 113 777-891 147-274 (374)
217 PRK11906 transcriptional regul 96.7 0.044 9.6E-07 61.0 16.0 112 857-970 274-396 (458)
218 PF13371 TPR_9: Tetratricopept 96.7 0.0088 1.9E-07 49.6 8.0 59 884-943 3-61 (73)
219 PRK11906 transcriptional regul 96.7 0.059 1.3E-06 60.1 16.3 146 891-1041 273-432 (458)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.017 3.7E-07 64.1 11.6 68 872-940 70-141 (453)
221 PF13424 TPR_12: Tetratricopep 96.5 0.0031 6.8E-08 53.2 4.2 61 878-938 7-73 (78)
222 PF04184 ST7: ST7 protein; In 96.5 0.1 2.3E-06 58.0 16.4 177 748-942 180-377 (539)
223 PF06239 ECSIT: Evolutionarily 96.4 0.026 5.6E-07 55.9 10.4 102 104-224 46-152 (228)
224 PF06239 ECSIT: Evolutionarily 96.4 0.052 1.1E-06 53.8 12.3 116 137-271 44-165 (228)
225 PF05843 Suf: Suppressor of fo 96.4 0.061 1.3E-06 58.3 14.2 130 422-554 3-136 (280)
226 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.3E-07 49.8 6.5 62 843-904 7-74 (78)
227 KOG1585 Protein required for f 96.2 0.93 2E-05 45.6 19.8 88 916-1004 155-250 (308)
228 PF13428 TPR_14: Tetratricopep 96.2 0.012 2.6E-07 42.8 5.1 42 912-954 2-43 (44)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.018 3.9E-07 63.9 8.4 62 806-869 75-140 (453)
230 PF04840 Vps16_C: Vps16, C-ter 96.1 2.9 6.3E-05 46.0 28.3 107 494-620 181-287 (319)
231 PF03704 BTAD: Bacterial trans 96.1 0.21 4.5E-06 48.2 15.0 68 914-982 65-137 (146)
232 PF13431 TPR_17: Tetratricopep 96.1 0.0053 1.1E-07 41.5 2.5 32 934-966 2-33 (34)
233 KOG4555 TPR repeat-containing 96.0 0.21 4.6E-06 44.6 12.7 88 852-941 54-145 (175)
234 KOG2610 Uncharacterized conser 96.0 0.34 7.3E-06 50.8 16.1 148 854-1006 116-272 (491)
235 COG4785 NlpI Lipoprotein NlpI, 96.0 0.25 5.4E-06 48.5 14.2 62 841-904 99-161 (297)
236 KOG4555 TPR repeat-containing 95.9 0.098 2.1E-06 46.7 10.3 92 918-1010 50-144 (175)
237 PF04840 Vps16_C: Vps16, C-ter 95.9 3.6 7.7E-05 45.3 29.9 105 319-443 181-285 (319)
238 PF04184 ST7: ST7 protein; In 95.8 0.45 9.8E-06 53.2 17.3 58 915-972 263-321 (539)
239 KOG1585 Protein required for f 95.8 0.88 1.9E-05 45.8 17.4 21 779-799 99-119 (308)
240 KOG4234 TPR repeat-containing 95.7 0.19 4.1E-06 48.6 12.2 62 879-941 137-198 (271)
241 COG4105 ComL DNA uptake lipopr 95.7 3.1 6.8E-05 42.9 21.6 55 917-971 173-229 (254)
242 KOG1586 Protein required for f 95.7 2.7 5.9E-05 42.2 22.8 63 917-979 119-187 (288)
243 KOG1550 Extracellular protein 95.7 4.5 9.8E-05 48.7 26.8 243 749-1009 262-537 (552)
244 PF13512 TPR_18: Tetratricopep 95.6 0.32 7E-06 45.3 12.9 66 877-943 11-79 (142)
245 KOG1550 Extracellular protein 95.6 7.6 0.00017 46.8 28.8 283 611-942 228-540 (552)
246 COG4785 NlpI Lipoprotein NlpI, 95.6 1.2 2.7E-05 43.9 17.1 179 713-905 77-266 (297)
247 COG1729 Uncharacterized protei 95.5 0.22 4.8E-06 51.6 12.9 90 852-943 152-247 (262)
248 COG1729 Uncharacterized protei 95.5 0.15 3.3E-06 52.7 11.7 93 918-1010 148-244 (262)
249 KOG1586 Protein required for f 95.5 2.4 5.2E-05 42.6 18.9 34 781-829 83-116 (288)
250 PF13281 DUF4071: Domain of un 95.4 2.3 5.1E-05 47.1 21.1 32 787-820 242-273 (374)
251 KOG4648 Uncharacterized conser 95.3 0.064 1.4E-06 56.0 8.1 88 813-904 104-193 (536)
252 COG3118 Thioredoxin domain-con 95.3 1.3 2.9E-05 46.4 17.4 154 850-1007 143-299 (304)
253 KOG4234 TPR repeat-containing 95.3 0.15 3.3E-06 49.3 9.8 89 885-975 104-197 (271)
254 KOG1920 IkappaB kinase complex 95.3 3.6 7.8E-05 51.2 23.5 50 884-937 973-1025(1265)
255 PF03704 BTAD: Bacterial trans 95.3 0.88 1.9E-05 43.9 15.9 66 845-912 66-137 (146)
256 KOG1258 mRNA processing protei 95.2 8.2 0.00018 44.7 37.2 183 841-1030 297-489 (577)
257 KOG2610 Uncharacterized conser 95.1 0.43 9.3E-06 50.1 13.1 153 748-903 115-274 (491)
258 PF10300 DUF3808: Protein of u 95.1 0.77 1.7E-05 53.8 17.3 117 889-1007 246-373 (468)
259 KOG2114 Vacuolar assembly/sort 95.0 11 0.00024 45.4 27.0 47 707-757 711-757 (933)
260 COG5107 RNA14 Pre-mRNA 3'-end 95.0 7.5 0.00016 43.0 39.9 129 668-799 399-530 (660)
261 KOG1920 IkappaB kinase complex 94.9 4.9 0.00011 50.1 23.2 158 819-1007 893-1052(1265)
262 PF13512 TPR_18: Tetratricopep 94.8 0.56 1.2E-05 43.7 11.9 83 910-994 9-97 (142)
263 KOG1258 mRNA processing protei 94.7 11 0.00023 43.8 36.0 116 505-623 60-179 (577)
264 COG3118 Thioredoxin domain-con 94.7 3.4 7.3E-05 43.5 18.4 154 883-1043 141-299 (304)
265 PF10300 DUF3808: Protein of u 94.5 0.98 2.1E-05 53.0 16.2 82 821-904 248-333 (468)
266 COG4105 ComL DNA uptake lipopr 94.4 7.2 0.00016 40.4 20.2 52 713-764 46-99 (254)
267 KOG2280 Vacuolar assembly/sort 94.4 15 0.00032 43.7 33.4 342 237-618 424-793 (829)
268 KOG0890 Protein kinase of the 94.3 19 0.00042 48.8 27.8 315 600-941 1388-1732(2382)
269 COG4649 Uncharacterized protei 94.2 5.4 0.00012 38.2 16.9 25 985-1009 171-195 (221)
270 COG2976 Uncharacterized protei 94.2 1.7 3.8E-05 42.5 14.1 91 849-941 97-189 (207)
271 COG4649 Uncharacterized protei 94.1 2.8 6E-05 40.0 14.6 123 817-939 69-195 (221)
272 PF10345 Cohesin_load: Cohesin 94.0 21 0.00045 43.9 41.3 49 817-865 372-428 (608)
273 PF08631 SPO22: Meiosis protei 93.9 11 0.00025 40.8 26.0 88 642-730 47-150 (278)
274 PF06552 TOM20_plant: Plant sp 93.8 0.88 1.9E-05 44.0 11.2 79 927-1014 51-140 (186)
275 KOG2114 Vacuolar assembly/sort 93.7 21 0.00045 43.1 30.9 116 564-690 338-455 (933)
276 PF02259 FAT: FAT domain; Int 93.6 14 0.00029 42.0 23.4 63 877-939 147-212 (352)
277 COG0790 FOG: TPR repeat, SEL1 93.6 13 0.00028 40.8 22.3 60 859-925 173-236 (292)
278 PF08631 SPO22: Meiosis protei 93.5 13 0.00028 40.3 27.1 123 642-765 5-150 (278)
279 PF13428 TPR_14: Tetratricopep 93.5 0.12 2.6E-06 37.6 4.0 26 844-869 4-29 (44)
280 PF02259 FAT: FAT domain; Int 93.2 12 0.00027 42.3 22.2 29 925-954 272-300 (352)
281 PF04053 Coatomer_WDAD: Coatom 93.1 1.1 2.3E-05 51.7 13.0 132 667-831 296-427 (443)
282 KOG4648 Uncharacterized conser 92.9 0.87 1.9E-05 48.0 10.4 90 850-942 106-196 (536)
283 COG0790 FOG: TPR repeat, SEL1 92.6 19 0.00041 39.5 24.0 98 856-960 128-236 (292)
284 PF12921 ATP13: Mitochondrial 92.5 2.1 4.6E-05 39.6 11.6 51 311-361 48-99 (126)
285 PF10345 Cohesin_load: Cohesin 92.5 33 0.00073 42.1 41.4 192 33-236 38-251 (608)
286 COG2976 Uncharacterized protei 92.4 5.4 0.00012 39.2 14.3 91 917-1011 95-189 (207)
287 PF12921 ATP13: Mitochondrial 92.4 1.2 2.7E-05 41.1 9.9 96 210-325 2-98 (126)
288 PF00515 TPR_1: Tetratricopept 92.3 0.26 5.6E-06 33.3 4.1 29 913-941 3-31 (34)
289 COG3629 DnrI DNA-binding trans 92.2 0.74 1.6E-05 48.6 9.2 74 110-184 158-236 (280)
290 PF13431 TPR_17: Tetratricopep 92.0 0.14 3.1E-06 34.5 2.5 30 865-896 3-33 (34)
291 PF07719 TPR_2: Tetratricopept 91.8 0.34 7.3E-06 32.6 4.2 29 913-941 3-31 (34)
292 COG5107 RNA14 Pre-mRNA 3'-end 91.7 26 0.00056 39.1 39.9 79 137-218 39-117 (660)
293 PF00515 TPR_1: Tetratricopept 91.7 0.29 6.3E-06 33.0 3.8 27 843-869 3-29 (34)
294 PF13176 TPR_7: Tetratricopept 91.5 0.19 4.1E-06 34.5 2.7 22 915-936 3-24 (36)
295 KOG4642 Chaperone-dependent E3 91.5 1.7 3.8E-05 43.7 10.2 83 922-1007 21-104 (284)
296 PF04053 Coatomer_WDAD: Coatom 91.5 3.5 7.6E-05 47.6 14.5 105 774-905 298-402 (443)
297 smart00299 CLH Clathrin heavy 91.4 8.6 0.00019 36.6 15.2 83 285-375 12-94 (140)
298 smart00299 CLH Clathrin heavy 91.3 9.6 0.00021 36.2 15.4 40 216-256 13-52 (140)
299 COG2909 MalT ATP-dependent tra 91.0 47 0.001 40.8 26.7 224 815-1041 424-684 (894)
300 PF07719 TPR_2: Tetratricopept 90.8 0.47 1E-05 31.9 4.2 32 947-980 2-33 (34)
301 KOG2280 Vacuolar assembly/sort 90.8 43 0.00093 40.1 35.2 120 533-654 397-531 (829)
302 PF09205 DUF1955: Domain of un 90.6 13 0.00029 33.9 14.9 61 390-451 91-151 (161)
303 KOG1464 COP9 signalosome, subu 90.5 23 0.0005 36.5 21.4 25 740-764 149-173 (440)
304 KOG3941 Intermediate in Toll s 90.2 2 4.3E-05 44.2 9.5 103 104-225 66-173 (406)
305 PF13176 TPR_7: Tetratricopept 90.0 0.56 1.2E-05 32.2 4.0 26 878-903 1-26 (36)
306 PF06552 TOM20_plant: Plant sp 89.8 2.3 5.1E-05 41.2 9.1 32 857-890 51-83 (186)
307 KOG2471 TPR repeat-containing 89.8 12 0.00025 42.1 15.3 19 1140-1160 534-552 (696)
308 KOG1464 COP9 signalosome, subu 89.2 30 0.00064 35.7 20.0 119 714-832 40-171 (440)
309 PF13170 DUF4003: Protein of u 89.0 16 0.00034 39.8 16.0 93 263-357 121-224 (297)
310 PF10602 RPN7: 26S proteasome 88.8 4.3 9.4E-05 40.3 10.9 94 737-832 37-139 (177)
311 PF09205 DUF1955: Domain of un 88.1 21 0.00045 32.7 15.1 60 707-767 92-151 (161)
312 PF10602 RPN7: 26S proteasome 87.8 4.6 0.0001 40.1 10.3 63 842-904 37-101 (177)
313 KOG3941 Intermediate in Toll s 87.6 3.4 7.4E-05 42.6 9.1 32 439-470 142-173 (406)
314 COG3629 DnrI DNA-binding trans 87.6 4.2 9.1E-05 43.1 10.2 73 703-777 155-233 (280)
315 KOG4642 Chaperone-dependent E3 87.0 7.9 0.00017 39.2 11.0 83 816-902 20-104 (284)
316 PF09613 HrpB1_HrpK: Bacterial 85.9 21 0.00045 34.3 12.8 50 713-764 22-72 (160)
317 COG1747 Uncharacterized N-term 85.8 71 0.0015 36.5 25.1 95 735-834 65-159 (711)
318 KOG2471 TPR repeat-containing 85.6 71 0.0015 36.3 27.4 108 674-782 248-380 (696)
319 PF09986 DUF2225: Uncharacteri 84.5 13 0.00028 38.3 11.8 65 877-941 119-195 (214)
320 KOG4507 Uncharacterized conser 84.3 4.4 9.5E-05 46.2 8.7 102 852-957 618-721 (886)
321 KOG1308 Hsp70-interacting prot 84.3 1 2.2E-05 47.9 3.7 95 922-1019 125-220 (377)
322 PF13181 TPR_8: Tetratricopept 84.0 1.5 3.2E-05 29.4 3.3 28 913-940 3-30 (34)
323 KOG2062 26S proteasome regulat 83.8 1.1E+02 0.0023 36.9 36.3 51 850-901 510-562 (929)
324 PF07035 Mic1: Colon cancer-as 83.5 46 0.001 32.4 15.8 134 231-378 15-148 (167)
325 PF09613 HrpB1_HrpK: Bacterial 83.3 24 0.00053 33.9 12.0 52 852-905 21-73 (160)
326 PF04097 Nic96: Nup93/Nic96; 83.2 96 0.0021 38.1 20.5 67 109-176 115-188 (613)
327 PF13181 TPR_8: Tetratricopept 82.9 2.1 4.5E-05 28.7 3.7 29 947-975 2-30 (34)
328 KOG0276 Vesicle coat complex C 82.6 21 0.00047 41.2 13.1 132 668-832 616-747 (794)
329 PF04097 Nic96: Nup93/Nic96; 81.7 1.4E+02 0.003 36.7 25.0 85 744-833 266-354 (613)
330 PF07035 Mic1: Colon cancer-as 81.5 55 0.0012 31.9 16.0 129 128-271 17-146 (167)
331 PF09986 DUF2225: Uncharacteri 81.1 19 0.00042 37.0 11.6 86 890-975 91-194 (214)
332 PRK15180 Vi polysaccharide bio 81.0 4.8 0.0001 44.6 7.3 146 817-967 300-449 (831)
333 TIGR02561 HrpB1_HrpK type III 80.3 35 0.00076 32.2 11.6 50 714-765 23-73 (153)
334 KOG2066 Vacuolar assembly/sort 80.0 1.5E+02 0.0033 36.0 27.2 54 427-482 363-419 (846)
335 KOG2066 Vacuolar assembly/sort 79.7 1.5E+02 0.0033 36.0 29.0 102 357-467 363-467 (846)
336 PF13174 TPR_6: Tetratricopept 79.6 2.8 6E-05 27.7 3.4 24 916-939 5-28 (33)
337 PF13170 DUF4003: Protein of u 79.3 1E+02 0.0022 33.6 20.4 49 612-660 79-133 (297)
338 KOG3807 Predicted membrane pro 78.7 98 0.0021 33.1 17.0 23 847-869 281-303 (556)
339 KOG1308 Hsp70-interacting prot 78.7 2.3 5.1E-05 45.3 4.0 92 889-982 127-218 (377)
340 PRK09687 putative lyase; Provi 78.5 1E+02 0.0023 33.3 28.6 121 805-939 141-262 (280)
341 KOG0545 Aryl-hydrocarbon recep 78.0 72 0.0016 32.8 13.6 58 883-941 237-294 (329)
342 PF13174 TPR_6: Tetratricopept 77.9 3 6.4E-05 27.5 3.1 27 949-975 3-29 (33)
343 KOG4570 Uncharacterized conser 77.8 42 0.00091 35.7 12.4 103 239-343 58-163 (418)
344 KOG2396 HAT (Half-A-TPR) repea 77.6 1.4E+02 0.003 34.3 38.4 239 615-868 302-557 (568)
345 PF13374 TPR_10: Tetratricopep 77.5 4.7 0.0001 28.4 4.3 26 914-939 5-30 (42)
346 KOG0403 Neoplastic transformat 77.1 1.3E+02 0.0029 33.8 26.2 147 388-551 217-371 (645)
347 TIGR02561 HrpB1_HrpK type III 76.9 59 0.0013 30.8 12.0 53 66-135 22-74 (153)
348 KOG0545 Aryl-hydrocarbon recep 76.3 98 0.0021 31.9 15.4 64 914-980 233-296 (329)
349 COG3947 Response regulator con 75.3 1.1E+02 0.0024 32.4 14.5 57 319-376 283-339 (361)
350 KOG3364 Membrane protein invol 75.2 33 0.00071 31.7 9.5 23 948-970 73-95 (149)
351 PF00637 Clathrin: Region in C 75.0 0.22 4.8E-06 47.9 -4.4 52 779-830 15-66 (143)
352 COG4455 ImpE Protein of avirul 74.8 1E+02 0.0022 31.3 14.3 50 920-970 10-59 (273)
353 PF13374 TPR_10: Tetratricopep 74.7 5.5 0.00012 28.0 4.0 28 877-904 3-30 (42)
354 COG5159 RPN6 26S proteasome re 74.6 1.2E+02 0.0026 32.0 21.1 95 740-834 129-234 (421)
355 PRK09687 putative lyase; Provi 74.3 1.3E+02 0.0029 32.5 28.2 38 530-570 240-277 (280)
356 KOG4570 Uncharacterized conser 73.9 32 0.0007 36.5 10.4 46 226-271 116-161 (418)
357 PF14561 TPR_20: Tetratricopep 73.7 23 0.00049 30.5 8.1 75 932-1007 9-85 (90)
358 KOG4507 Uncharacterized conser 70.4 15 0.00032 42.3 7.6 115 872-989 603-718 (886)
359 PF11207 DUF2989: Protein of u 70.2 37 0.00081 34.0 9.6 72 823-895 123-197 (203)
360 PF04190 DUF410: Protein of un 69.7 1.6E+02 0.0035 31.5 18.6 25 805-829 89-113 (260)
361 KOG0530 Protein farnesyltransf 69.7 1.3E+02 0.0029 31.4 13.4 170 853-1027 55-232 (318)
362 KOG0276 Vesicle coat complex C 69.3 55 0.0012 38.2 11.8 98 292-410 649-746 (794)
363 TIGR02508 type_III_yscG type I 68.9 54 0.0012 28.5 8.8 61 391-458 45-105 (115)
364 COG3947 Response regulator con 68.8 1.7E+02 0.0036 31.2 17.8 55 846-902 284-339 (361)
365 PF11207 DUF2989: Protein of u 68.7 1.4E+02 0.0029 30.2 17.9 79 886-966 117-198 (203)
366 smart00028 TPR Tetratricopepti 68.7 7.9 0.00017 24.6 3.6 24 916-939 6-29 (34)
367 KOG0376 Serine-threonine phosp 67.8 11 0.00024 42.5 6.2 88 884-974 12-100 (476)
368 KOG3364 Membrane protein invol 67.7 59 0.0013 30.1 9.4 71 873-943 29-103 (149)
369 KOG2063 Vacuolar assembly/sort 66.8 2.6E+02 0.0057 35.3 17.9 129 703-853 506-638 (877)
370 smart00028 TPR Tetratricopepti 65.5 9.7 0.00021 24.1 3.5 21 847-867 7-27 (34)
371 COG1747 Uncharacterized N-term 65.5 2.6E+02 0.0057 32.3 25.3 94 489-587 65-158 (711)
372 TIGR02508 type_III_yscG type I 65.2 58 0.0013 28.3 8.3 50 255-310 49-98 (115)
373 KOG4279 Serine/threonine prote 64.3 1.3E+02 0.0028 36.2 13.6 78 720-800 182-272 (1226)
374 PF07721 TPR_4: Tetratricopept 64.2 10 0.00022 23.6 3.0 20 950-969 5-24 (26)
375 PF12968 DUF3856: Domain of Un 63.5 1.2E+02 0.0025 27.5 10.6 18 989-1006 108-125 (144)
376 PRK11619 lytic murein transgly 62.0 3.9E+02 0.0084 33.0 42.6 15 678-692 324-338 (644)
377 KOG0376 Serine-threonine phosp 62.0 15 0.00032 41.6 5.7 94 847-943 10-104 (476)
378 KOG2300 Uncharacterized conser 61.3 3E+02 0.0066 31.6 38.3 155 852-1006 334-510 (629)
379 PF10579 Rapsyn_N: Rapsyn N-te 61.1 20 0.00043 29.6 4.8 48 921-968 16-65 (80)
380 PRK10941 hypothetical protein; 61.1 47 0.001 35.5 9.2 59 916-975 186-244 (269)
381 PF14853 Fis1_TPR_C: Fis1 C-te 60.6 17 0.00038 27.5 4.2 27 916-942 6-32 (53)
382 PRK11619 lytic murein transgly 59.9 4.2E+02 0.009 32.8 43.1 463 527-1051 36-510 (644)
383 KOG0551 Hsp90 co-chaperone CNS 58.9 45 0.00097 35.9 8.2 90 812-903 87-180 (390)
384 PF07721 TPR_4: Tetratricopept 58.7 14 0.00031 22.9 3.0 23 107-129 3-25 (26)
385 PF13762 MNE1: Mitochondrial s 58.3 1.7E+02 0.0037 27.8 11.8 81 283-363 42-128 (145)
386 PHA02875 ankyrin repeat protei 57.4 2.7E+02 0.0059 32.2 15.9 38 186-227 10-49 (413)
387 PHA02875 ankyrin repeat protei 56.8 2.3E+02 0.0049 32.9 15.1 44 337-384 183-229 (413)
388 PF04910 Tcf25: Transcriptiona 56.5 3.4E+02 0.0074 30.7 19.3 165 772-956 41-234 (360)
389 COG2909 MalT ATP-dependent tra 55.8 5.1E+02 0.011 32.5 34.6 223 676-901 425-684 (894)
390 PF14853 Fis1_TPR_C: Fis1 C-te 55.7 39 0.00084 25.6 5.3 29 846-876 6-34 (53)
391 PRK10941 hypothetical protein; 55.4 1.3E+02 0.0029 32.1 11.4 62 881-943 186-247 (269)
392 cd00923 Cyt_c_Oxidase_Va Cytoc 55.2 69 0.0015 27.7 7.1 48 540-587 22-69 (103)
393 PF12968 DUF3856: Domain of Un 54.8 1.7E+02 0.0036 26.6 11.0 16 784-799 22-37 (144)
394 COG4455 ImpE Protein of avirul 54.4 63 0.0014 32.6 7.9 55 636-692 7-61 (273)
395 cd00923 Cyt_c_Oxidase_Va Cytoc 53.6 70 0.0015 27.7 6.9 60 123-183 25-84 (103)
396 PF00637 Clathrin: Region in C 53.4 6.5 0.00014 37.6 1.2 54 111-164 13-66 (143)
397 PF07575 Nucleopor_Nup85: Nup8 53.0 4.2E+02 0.0091 32.3 16.8 26 104-130 148-173 (566)
398 PRK13342 recombination factor 52.7 4.2E+02 0.0092 30.7 19.2 47 844-890 230-279 (413)
399 PF02284 COX5A: Cytochrome c o 51.9 1.7E+02 0.0037 25.8 9.7 47 929-975 28-74 (108)
400 KOG4814 Uncharacterized conser 51.9 94 0.002 36.6 9.8 92 844-939 358-456 (872)
401 PF00244 14-3-3: 14-3-3 protei 51.9 2.6E+02 0.0057 29.3 12.8 24 742-765 7-30 (236)
402 PF10579 Rapsyn_N: Rapsyn N-te 51.7 29 0.00064 28.6 4.3 19 879-897 46-64 (80)
403 PF02284 COX5A: Cytochrome c o 50.4 69 0.0015 28.0 6.5 60 123-183 28-87 (108)
404 PF04190 DUF410: Protein of un 50.2 3.5E+02 0.0075 28.9 19.9 81 735-834 89-169 (260)
405 KOG3824 Huntingtin interacting 49.9 55 0.0012 34.6 7.0 57 886-943 126-182 (472)
406 KOG0551 Hsp90 co-chaperone CNS 48.5 1E+02 0.0023 33.3 8.9 96 843-939 83-181 (390)
407 COG4976 Predicted methyltransf 48.5 27 0.00059 35.3 4.5 57 886-943 5-61 (287)
408 TIGR03504 FimV_Cterm FimV C-te 47.6 38 0.00082 24.5 3.9 22 742-763 5-26 (44)
409 KOG4521 Nuclear pore complex, 46.5 4E+02 0.0088 34.3 14.4 78 809-893 986-1071(1480)
410 PF07163 Pex26: Pex26 protein; 46.2 4E+02 0.0086 28.4 13.3 124 108-233 38-181 (309)
411 COG4715 Uncharacterized conser 45.4 4.4E+02 0.0096 31.0 13.7 148 860-1014 284-436 (587)
412 PF08424 NRDE-2: NRDE-2, neces 45.1 4.7E+02 0.01 29.0 19.3 79 788-868 48-129 (321)
413 COG4941 Predicted RNA polymera 44.9 3.2E+02 0.0069 29.8 11.7 84 858-943 313-397 (415)
414 PF09477 Type_III_YscG: Bacter 44.9 2.3E+02 0.0049 25.3 9.3 32 312-345 68-99 (116)
415 PF07720 TPR_3: Tetratricopept 44.8 55 0.0012 22.5 4.2 21 948-968 3-23 (36)
416 PF09477 Type_III_YscG: Bacter 44.3 2.3E+02 0.005 25.2 9.4 79 225-310 21-99 (116)
417 PF08225 Antimicrobial19: Pseu 44.1 14 0.0003 21.2 1.0 10 1149-1158 12-21 (23)
418 PF07575 Nucleopor_Nup85: Nup8 43.8 6.8E+02 0.015 30.5 18.0 59 388-448 375-433 (566)
419 KOG2297 Predicted translation 43.6 4.5E+02 0.0097 28.3 19.0 183 345-580 141-341 (412)
420 TIGR03504 FimV_Cterm FimV C-te 43.4 49 0.0011 23.9 4.0 24 777-800 5-28 (44)
421 PF12862 Apc5: Anaphase-promot 42.7 94 0.002 27.0 6.7 23 917-939 47-69 (94)
422 PF09670 Cas_Cas02710: CRISPR- 42.6 2E+02 0.0043 32.9 11.0 20 816-835 141-160 (379)
423 PF04910 Tcf25: Transcriptiona 42.3 5.5E+02 0.012 29.0 17.6 58 916-973 108-166 (360)
424 KOG2581 26S proteasome regulat 42.1 5.5E+02 0.012 28.9 19.8 60 988-1047 344-406 (493)
425 PF08424 NRDE-2: NRDE-2, neces 40.4 5.5E+02 0.012 28.5 20.0 60 683-745 48-108 (321)
426 KOG1839 Uncharacterized protei 40.0 2.8E+02 0.0061 36.2 12.3 98 842-939 974-1085(1236)
427 COG2256 MGS1 ATPase related to 39.6 6.1E+02 0.013 28.7 14.9 94 783-891 202-299 (436)
428 PF12862 Apc5: Anaphase-promot 39.5 1.2E+02 0.0026 26.3 6.8 27 878-904 43-69 (94)
429 PF07163 Pex26: Pex26 protein; 39.3 2.7E+02 0.0059 29.6 10.0 50 569-618 127-181 (309)
430 PRK12798 chemotaxis protein; R 38.6 6.4E+02 0.014 28.7 23.4 152 714-869 125-285 (421)
431 KOG2063 Vacuolar assembly/sort 38.3 9.6E+02 0.021 30.6 28.6 115 528-642 507-638 (877)
432 KOG4814 Uncharacterized conser 37.2 2.4E+02 0.0052 33.5 10.2 94 737-834 356-456 (872)
433 COG4976 Predicted methyltransf 36.9 78 0.0017 32.3 5.6 55 850-906 4-59 (287)
434 KOG3824 Huntingtin interacting 36.9 1.3E+02 0.0029 31.9 7.4 53 851-905 126-179 (472)
435 PHA02537 M terminase endonucle 36.8 3.7E+02 0.0081 27.9 10.7 24 780-803 92-115 (230)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 36.7 1.8E+02 0.0039 27.0 7.8 42 859-900 81-123 (126)
437 COG5187 RPN7 26S proteasome re 36.7 5.5E+02 0.012 27.4 13.2 96 806-903 115-219 (412)
438 smart00386 HAT HAT (Half-A-TPR 35.9 69 0.0015 20.5 3.8 29 925-954 1-29 (33)
439 PHA02537 M terminase endonucle 34.3 3.9E+02 0.0085 27.8 10.4 24 815-838 92-115 (230)
440 KOG2300 Uncharacterized conser 32.6 8.4E+02 0.018 28.3 43.9 200 784-983 288-523 (629)
441 KOG2034 Vacuolar sorting prote 32.4 1.1E+03 0.024 29.6 25.1 49 494-551 508-556 (911)
442 KOG2422 Uncharacterized conser 31.4 9.6E+02 0.021 28.6 18.9 91 850-942 351-450 (665)
443 PF09670 Cas_Cas02710: CRISPR- 30.8 4.4E+02 0.0095 30.1 11.3 53 676-729 141-197 (379)
444 PF13929 mRNA_stabil: mRNA sta 30.7 7.1E+02 0.015 26.8 17.2 63 241-303 198-261 (292)
445 KOG0292 Vesicle coat complex C 30.6 90 0.002 38.2 5.8 70 782-866 654-723 (1202)
446 KOG4279 Serine/threonine prote 30.5 9.6E+02 0.021 29.4 13.6 127 757-890 184-334 (1226)
447 PF11663 Toxin_YhaV: Toxin wit 30.1 52 0.0011 30.4 2.9 31 152-184 107-137 (140)
448 KOG3807 Predicted membrane pro 29.7 7.6E+02 0.016 26.8 16.1 52 640-691 285-336 (556)
449 PF15297 CKAP2_C: Cytoskeleton 29.5 2E+02 0.0043 31.7 7.6 42 879-920 143-184 (353)
450 PF14561 TPR_20: Tetratricopep 29.1 3.7E+02 0.0081 23.1 10.1 54 978-1031 18-73 (90)
451 PF14689 SPOB_a: Sensor_kinase 29.0 1.4E+02 0.003 23.6 4.9 29 524-552 22-50 (62)
452 PF14689 SPOB_a: Sensor_kinase 28.9 1.4E+02 0.0031 23.5 5.0 46 962-1009 6-51 (62)
453 cd02679 MIT_spastin MIT: domai 28.5 1.1E+02 0.0023 25.6 4.3 18 992-1009 50-67 (79)
454 PF13929 mRNA_stabil: mRNA sta 27.9 8E+02 0.017 26.5 17.1 61 382-442 199-260 (292)
455 PF10366 Vps39_1: Vacuolar sor 27.9 3.4E+02 0.0073 24.4 7.8 26 388-413 42-67 (108)
456 PRK13341 recombination factor 27.8 1.3E+03 0.028 29.0 18.9 78 853-930 270-352 (725)
457 KOG4521 Nuclear pore complex, 27.2 1.5E+03 0.033 29.6 16.3 119 633-759 986-1125(1480)
458 KOG2062 26S proteasome regulat 27.1 1.3E+03 0.027 28.6 45.3 253 570-834 367-634 (929)
459 COG5159 RPN6 26S proteasome re 26.8 8E+02 0.017 26.2 22.2 22 777-798 131-152 (421)
460 PF11848 DUF3368: Domain of un 25.3 2.2E+02 0.0047 21.1 5.1 30 187-216 14-43 (48)
461 cd02680 MIT_calpain7_2 MIT: do 25.2 1.2E+02 0.0025 25.1 3.9 16 924-939 19-34 (75)
462 COG5187 RPN7 26S proteasome re 25.1 8.7E+02 0.019 26.0 13.6 68 280-347 115-187 (412)
463 PF11663 Toxin_YhaV: Toxin wit 25.0 70 0.0015 29.6 2.9 29 398-428 108-136 (140)
464 cd02680 MIT_calpain7_2 MIT: do 24.7 1.2E+02 0.0027 25.0 4.0 16 854-869 19-34 (75)
465 KOG0530 Protein farnesyltransf 24.2 8.8E+02 0.019 25.7 13.5 123 888-1013 55-179 (318)
466 COG2178 Predicted RNA-binding 23.8 7.6E+02 0.016 24.9 9.7 57 288-344 37-98 (204)
467 PF10255 Paf67: RNA polymerase 23.8 1.1E+03 0.025 26.9 17.2 62 808-869 124-192 (404)
468 PF11848 DUF3368: Domain of un 23.7 2.5E+02 0.0053 20.8 5.1 33 116-148 13-45 (48)
469 KOG2396 HAT (Half-A-TPR) repea 23.5 1.2E+03 0.027 27.2 42.6 30 209-238 104-133 (568)
470 PF12002 MgsA_C: MgsA AAA+ ATP 23.4 5.9E+02 0.013 25.0 8.9 71 856-926 3-78 (168)
471 PHA03100 ankyrin repeat protei 23.3 6.6E+02 0.014 29.7 11.9 10 407-416 298-307 (480)
472 KOG0687 26S proteasome regulat 23.1 1E+03 0.022 26.1 16.5 61 285-345 109-174 (393)
473 PF11846 DUF3366: Domain of un 22.8 1.8E+02 0.0039 29.3 5.9 32 872-903 140-171 (193)
474 smart00777 Mad3_BUB1_I Mad3/BU 22.8 5.7E+02 0.012 23.7 8.3 40 860-899 82-122 (125)
475 PF11838 ERAP1_C: ERAP1-like C 22.8 1E+03 0.022 26.1 20.9 81 401-484 146-230 (324)
476 PF13762 MNE1: Mitochondrial s 22.8 6.8E+02 0.015 23.9 10.5 23 214-236 43-65 (145)
477 PRK13342 recombination factor 22.6 1.2E+03 0.027 26.9 19.0 40 318-357 230-272 (413)
478 PRK10564 maltose regulon perip 22.5 1.4E+02 0.0031 32.1 5.0 28 284-311 261-288 (303)
479 PF04762 IKI3: IKI3 family; I 22.4 1.2E+03 0.025 30.5 14.1 24 776-799 817-842 (928)
480 KOG0687 26S proteasome regulat 22.3 1.1E+03 0.023 26.0 15.7 65 739-803 107-176 (393)
481 COG0735 Fur Fe2+/Zn2+ uptake r 22.2 3.7E+02 0.008 25.7 7.4 60 760-820 10-69 (145)
482 PRK14700 recombination factor 22.2 1E+03 0.023 25.9 18.0 75 840-914 122-204 (300)
483 PF11768 DUF3312: Protein of u 21.6 7.7E+02 0.017 29.2 10.9 23 811-833 413-435 (545)
484 KOG0686 COP9 signalosome, subu 21.6 1.2E+03 0.026 26.4 14.6 26 738-763 152-177 (466)
485 smart00777 Mad3_BUB1_I Mad3/BU 21.3 4.3E+02 0.0092 24.5 7.2 42 964-1005 81-123 (125)
486 KOG1839 Uncharacterized protei 21.1 7.6E+02 0.016 32.5 11.5 154 851-1006 942-1124(1236)
487 COG2912 Uncharacterized conser 21.1 3.6E+02 0.0079 28.6 7.6 62 918-982 188-249 (269)
488 KOG2582 COP9 signalosome, subu 21.1 1.2E+03 0.026 26.1 17.8 56 290-345 287-346 (422)
489 KOG2297 Predicted translation 21.1 1.1E+03 0.023 25.6 21.3 19 456-474 322-340 (412)
490 PF00244 14-3-3: 14-3-3 protei 20.9 9.8E+02 0.021 25.1 13.7 40 636-676 7-46 (236)
491 PRK12798 chemotaxis protein; R 20.9 1.3E+03 0.028 26.5 22.6 154 748-905 124-286 (421)
492 PRK10564 maltose regulon perip 20.9 2E+02 0.0044 31.0 5.7 30 248-277 260-289 (303)
493 COG2178 Predicted RNA-binding 20.1 9E+02 0.02 24.3 10.7 37 858-903 20-56 (204)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-111 Score=1066.17 Aligned_cols=791 Identities=18% Similarity=0.255 Sum_probs=753.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 000951 312 SPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSV 391 (1211)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~l 391 (1211)
.|+..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++.+|...+.++.+.+++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 000951 392 IDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKV 471 (1211)
Q Consensus 392 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 471 (1211)
+.+|++.|+++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999997 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 472 TEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEM 551 (1211)
Q Consensus 472 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (1211)
+.+.+++..+.+.|..||..++|+|+.+|++.|++++|.++|+.|. .||.++||++|.+|++.|++++|+++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 479999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 000951 552 VKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY 631 (1211)
Q Consensus 552 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 631 (1211)
.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.+..+|..+|++|+.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 47899
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 000951 632 TYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGF 711 (1211)
Q Consensus 632 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 711 (1211)
+|++++.+|++.|++++|+++|++|.+.+ +.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..++++|+++|
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951 712 SRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGF 791 (1211)
Q Consensus 712 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 791 (1211)
++.|++++|.++|++|.+ +|..+|+.++.+|.+.|++++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999999974 5889999999999999999999999999986 59999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC
Q 000951 792 KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG 871 (1211)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g 871 (1211)
+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.+ .||..+|++|+.+|.++|+.++|+.+|++|.+.|
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
+.||..||..++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|.+.|++++|.+++++| +.+||..+|.
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~ 661 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 99999999999999999999999999999998 7899999999999999999999999999998875 5789999999
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHh
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISK 1028 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 1028 (1211)
+|+.+|..+|+.+.|+...+.+.+. +|+.. .|..+.+.|+..|+|++|.++++.|+++|++|+| ++|+++.+.
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~--- 736 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK--- 736 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE---
Confidence 9999999999999999987766655 89766 5666777999999999999999999999999999 999997544
Q ss_pred cccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHH-HHHHHH-HHhhhhccCCCCCChhHHhhCchhHHHHHHHHHHH
Q 000951 1029 KENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLI-NALRKL-KSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQA 1106 (1211)
Q Consensus 1029 ~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1211)
+|.|..+|.+||+..+| ..|+.| .+|++.||. +|+.++.++ + +
T Consensus 737 --------------------~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~---~~~~~~~~~--------~----~ 781 (857)
T PLN03077 737 --------------------VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA---GSESSSMDE--------I----E 781 (857)
T ss_pred --------------------EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC---CCcchhccc--------c----H
Confidence 89999999999999999 999999 999999996 444333322 1 4
Q ss_pred HHHHhhhccCCCCccccCCCcceeeccchhhhhhhhcCcchhhhhHHHHhhccccceeecCccc
Q 000951 1107 SSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKLIYQGSKQRVIIGPAV 1170 (1211)
Q Consensus 1107 ~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1211)
++|+..|++||||||||||||+||||+||||+||||||+|| |+++||||||++|||||||+.
T Consensus 782 ~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dc--h~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 782 VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENC--HNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccH--HHHHHHHHHHhCeEEEEecCC
Confidence 55778999999999999999999999999999999999999 999999999999999999974
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-86 Score=818.91 Aligned_cols=592 Identities=18% Similarity=0.242 Sum_probs=554.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 000951 522 VPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG-HHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600 (1211)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 600 (1211)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.|.+++..+.+.|..||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466789999999999999999999999998754 678999999999999999999999999999999999899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 000951 601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG 680 (1211)
Q Consensus 601 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 680 (1211)
++.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.+ ..|+..+|..++.+|...|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999963 799999999999999999999999999999988 8999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 000951 681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLN 760 (1211)
Q Consensus 681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (1211)
..+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|++|.+ +|..+||.|+.+|.+.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999963 599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC
Q 000951 761 TMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840 (1211)
Q Consensus 761 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 840 (1211)
+|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.||..++++|+++|+++|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 489
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEA-LGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-~~~~~~~~~~~~l~~ 919 (1211)
..+|++|+.+|+++|+.++|+++|++|.+.|+.||..||..++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChh
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVM 998 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 998 (1211)
+|.+.|++++|.+++++ ++..|+..+|++|+.+|+.+|+++.|..+++.+. ++.|+ ..+|..++++|++.|+|+
T Consensus 471 ~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHH
Confidence 99999999999999876 5678899999999999999999999999988765 45886 458999999999999999
Q ss_pred HHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHH-HHHHHH-HHhh
Q 000951 999 PAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLI-NALRKL-KSFK 1075 (1211)
Q Consensus 999 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~l~~l-~~~~ 1075 (1211)
+|.+++++|+++|+++.| .+|+++.+. +|.|..+|..||+..+| ..++.| .+|+
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~-----------------------~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQ-----------------------DHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCe-----------------------EEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999998 999998655 89999999999999999 999999 9999
Q ss_pred hhccCCCCCChhHHhhCchhHHHHHHHHHHHHHHHhhhccCCCCccccCCCcceeeccchhhhhhhhcCcchhhhhHHHH
Q 000951 1076 KNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNASVIATFPADLCEEKLFCPCCLLHYLLKL 1155 (1211)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1211)
+.||. +|+ ..++++|+ +++++..|++||||||||||||+||||+||||+||||||+|| |+++||
T Consensus 603 ~~gy~---~~~-------~~~~~~~~----~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dc--h~~~k~ 666 (697)
T PLN03081 603 EYGYV---AEE-------NELLPDVD----EDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDC--HKVIKF 666 (697)
T ss_pred HcCCC---CCc-------chhhcccc----HHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCc--hhhHHH
Confidence 99996 443 34445555 556778999999999999999999999999999999999999 999999
Q ss_pred hhccccceeecCccc
Q 000951 1156 IYQGSKQRVIIGPAV 1170 (1211)
Q Consensus 1156 ~~~~~~~~~~~~~~~ 1170 (1211)
|||+++|||||||+.
T Consensus 667 ~s~~~~r~i~~rd~~ 681 (697)
T PLN03081 667 IALVTKREIVVRDAS 681 (697)
T ss_pred HhhhcceEEEEecCC
Confidence 999999999999974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-82 Score=799.04 Aligned_cols=676 Identities=20% Similarity=0.272 Sum_probs=644.7
Q ss_pred CChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 000951 103 SNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILI 182 (1211)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 182 (1211)
.++..++.+++.|++.|++++|+.+|+.|...|+.|+..+|..++.++.+.+.++.+..++..+.+.+..++..++|.++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 000951 183 NVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSA 262 (1211)
Q Consensus 183 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 262 (1211)
.+|++.|+++.|..+|++|. .||.++||++|.+|++.|++++|+++|++|...|+.||..||++++++|++.+++.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999997 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951 263 KGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME 342 (1211)
Q Consensus 263 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 342 (1211)
.+.+++..|.+.|+.||..+||+||.+|+++|++++|..+|++|. .||.++||+||.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 4799999999999999999999999999999
Q ss_pred HCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 000951 343 EMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLIT 422 (1211)
Q Consensus 343 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 422 (1211)
+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 579999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 000951 423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCK 502 (1211)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 502 (1211)
||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|..++..++|+|+++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 000951 503 GGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRF 582 (1211)
Q Consensus 503 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 582 (1211)
.|++++|.++|++|.+ +|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|.++.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 9999999999999974 7899999999999999999999999999986 5899999999999999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 000951 583 LNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTF 662 (1211)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 662 (1211)
+..+.+.+..++..++++|+++|+++|++++|..+|+.+ .||..+|+++|.+|++.|+.++|+++|++|.+.| +
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~ 585 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-V 585 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 999999999999999999999999999999999999987 4799999999999999999999999999999988 9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951 663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMD-KEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI 741 (1211)
Q Consensus 663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 741 (1211)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999997 78999999999999999999999999999999984 6789999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC 806 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 806 (1211)
|+.+|...|+.+.+....+++.+ +.|+.. .|..+...|...|+|++|.++.+.|.+.|+.+++
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 99999889999988888888887 667554 4445557888888888888888888888877764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-67 Score=642.97 Aligned_cols=547 Identities=19% Similarity=0.279 Sum_probs=406.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH
Q 000951 136 FNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKI-CPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYN 214 (1211)
Q Consensus 136 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 214 (1211)
..++...|..++..|++.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 355667777777778888888888888888877774 46677777777888888888888888777763 7888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 000951 215 TLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEG 294 (1211)
Q Consensus 215 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 294 (1211)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCcCHhHHHHHHHHHHhcCChHHHHHH
Q 000951 295 KIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE--MGLRPNEVSYGALLNGFCKHAKFDLARSL 372 (1211)
Q Consensus 295 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~l 372 (1211)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.+||+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888865 56778888888888888888888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000951 373 LERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLV 452 (1211)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 452 (1211)
|+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 000951 453 PNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMI 532 (1211)
Q Consensus 453 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li 532 (1211)
||..+|+.+|.+|++.|++++|.++|+.|.+.+..||..+||.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888888888888888888777777888888888888888888888888888888777788888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951 533 DGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW 612 (1211)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 612 (1211)
.+|++.|++++|.++|++|.+.|+.||..+|++++..|. ++++++..+.+.+..... .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence 888888888888888888888888888888887775543 234444443332221110 00011112234
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM 692 (1211)
Q Consensus 613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 692 (1211)
+|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.+...+ ..|+..+|+++++++.+ ..++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~-~~~~~~~y~~Li~g~~~--~~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA-DSQKQSNLSTLVDGFGE--YDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC-CCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence 566667777666666666666666666656666666666666555444 55666666666666522 124566666666
Q ss_pred HhCCCCCCH
Q 000951 693 DKEGVYPDT 701 (1211)
Q Consensus 693 ~~~g~~~~~ 701 (1211)
.+.|+.|+.
T Consensus 907 ~~~Gi~p~~ 915 (1060)
T PLN03218 907 ASLGVVPSV 915 (1060)
T ss_pred HHcCCCCCc
Confidence 666666654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.1e-67 Score=642.42 Aligned_cols=543 Identities=18% Similarity=0.280 Sum_probs=296.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 000951 56 ILCLTTHVLVKTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRG 135 (1211)
Q Consensus 56 ~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 135 (1211)
.|..+...+++.|++++|..+|+.|...+.. +.+...+..++..|.+.|.+++|+.+|+.|..
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv---------------~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-- 434 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL---------------DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-- 434 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC---------------CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--
Confidence 3344444455555555555555555544321 11223344455555555555555555555542
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 000951 136 FNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNT 215 (1211)
Q Consensus 136 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 215 (1211)
|+..+||.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.++|++
T Consensus 435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHc
Q 000951 216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRK--RMITPNEVTYNTLINGFVKE 293 (1211)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~ 293 (1211)
+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||.++|+++|.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 5555555555555555555555555555555555555555555555555555555543 34555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHH
Q 000951 294 GKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLL 373 (1211)
Q Consensus 294 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 373 (1211)
|++++|.++|++|.+.|+.|+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 000951 374 ERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVP 453 (1211)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 453 (1211)
++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951 454 NKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID 533 (1211)
Q Consensus 454 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 533 (1211)
|..||+.++.+|++.|++++|.++|+.|.+.|..||..+|+.++.++. +++++|..+.+.+... +. ..
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---------~~-g~ 820 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---------DS-GR 820 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------hc-cc
Confidence 555555555555555555555555555555555555555555554322 1233333332222211 00 00
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHH
Q 000951 534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWE 613 (1211)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 613 (1211)
.....+..+.|+.+|++|++.|+.||..||+.++.++++.+....+..+++.+...+..++..+|+++++++.+. .++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 011112234466666666666666666666666655555556666666655555555555556666666655221 245
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 000951 614 AIVLLDEMVQFNLLPDRY 631 (1211)
Q Consensus 614 A~~~~~~m~~~~~~p~~~ 631 (1211)
|..+|++|...|+.|+..
T Consensus 899 A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 899 AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHcCCCCCcc
Confidence 666666666666555554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-59 Score=579.14 Aligned_cols=476 Identities=20% Similarity=0.294 Sum_probs=445.5
Q ss_pred CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951 207 VPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKG-IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNT 285 (1211)
Q Consensus 207 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 285 (1211)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566788888888888888888888888887754 678888888888888888888888899999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCC
Q 000951 286 LINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK 365 (1211)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (1211)
|+++|+++|+++.|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999997 489999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 366 FDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCK 445 (1211)
Q Consensus 366 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 445 (1211)
.+.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|. .+|+++||++|.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 46999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH
Q 000951 446 MYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNS 525 (1211)
Q Consensus 446 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 525 (1211)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|..||..++++|+++|+++|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4799
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh-CCCCccHHHHHHHHHH
Q 000951 526 ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH-IPSAVDTVAYNTILAE 604 (1211)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~ 604 (1211)
++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976 5888899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCCHH
Q 000951 605 TCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP-NNVMFTCLVDGLFKAGQSK 683 (1211)
Q Consensus 605 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 683 (1211)
|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|..+++++.+ ..| +..+|..|++.|++.|+++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHH
Confidence 99999999999998876 4679999999999999999999999999999876 345 4678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 000951 684 AAMHISKIMDKEGVYPD 700 (1211)
Q Consensus 684 ~A~~~~~~~~~~g~~~~ 700 (1211)
+|.++++.|.+.|+...
T Consensus 546 ~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 546 EAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCccC
Confidence 99999999988887643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-50 Score=524.93 Aligned_cols=874 Identities=14% Similarity=0.032 Sum_probs=730.7
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951 104 NPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILIN 183 (1211)
Q Consensus 104 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 183 (1211)
++..+....+.+...|++++|+..|++..... +.+...+..+..++.+.|+++.|...|+++...+. ++......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHH
Confidence 45555667888999999999999999987653 55778888999999999999999999999988753 45666778889
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951 184 VSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAK 263 (1211)
Q Consensus 184 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 263 (1211)
++...|++++|..++..............+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 999999999999999876533334455677888899999999999999999998764 3456778888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000951 264 GYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE 343 (1211)
Q Consensus 264 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (1211)
|..+++.+.+..+ ++...+..+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 477788888999999999999999999998765 45778888999999999999999999999987
Q ss_pred CCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 000951 344 MGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITF 423 (1211)
Q Consensus 344 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 423 (1211)
... .+...+......+...|+++.|...++.+.+.+. .+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 256 ~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 332 (899)
T TIGR02917 256 KAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQAR 332 (899)
T ss_pred hCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 642 2333344444556678999999999999988762 334455566777889999999999999998763 3356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 000951 424 SVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKG 503 (1211)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 503 (1211)
..+...+.+.|++++|...+.++.... +.+...+..+...+.+.|++++|.+.|+.+.+..+. +...+..+...+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhC
Confidence 888889999999999999999998764 557778888999999999999999999998887554 667788888899999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 000951 504 GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFL 583 (1211)
Q Consensus 504 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 583 (1211)
|++++|.+.|..+...... +...+..++..+.+.|++++|+.+++++... .+++..++..+...+...|++++|.+.|
T Consensus 411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998876422 3456667788899999999999999999874 3556778888899999999999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 000951 584 NSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFS 663 (1211)
Q Consensus 584 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 663 (1211)
.++.+..+. +...+..++..+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...++++.+.+ +
T Consensus 489 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 564 (899)
T TIGR02917 489 EKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--P 564 (899)
T ss_pred HHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence 999887654 66778888999999999999999999998864 3467788888889999999999999999998864 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951 664 PNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNIL 742 (1211)
Q Consensus 664 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 742 (1211)
.+...+..++..+...|++++|..+++.+.+.. +.+...|..++..|.+.|++++|...|+++.+. .| +...+..+
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 641 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL 641 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 556778888999999999999999999987653 556788899999999999999999999999864 34 67788889
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951 743 LHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 821 (1211)
+.+|...|++++|...|+++.+ ..| +..++..++..+...|++++|.++++.+.... +.+...+..++.++...|+
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 9999999999999999999987 445 46778888899999999999999999998864 4466778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951 822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
+++|++.|+++.+.. |+..++..++.++.+.|++++|...++++++ ..|+ ...+..++..+...|++++|.+.|+
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999999999998754 5557788889999999999999999999988 5664 5788889999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-
Q 000951 901 EMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL- 979 (1211)
Q Consensus 901 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p- 979 (1211)
++.+.. ++++.++..++.++...|+ .+|+..++++++..+. ++..+..++.++...|++++|...|+.+.+. .|
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~ 869 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNI--APE 869 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 998764 6778888999999999999 8899999999988765 7788889999999999999999999887776 55
Q ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 980 DVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 980 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
+..++..++.+|...|++++|.+++++|+
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56688889999999999999999998885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-49 Score=520.88 Aligned_cols=876 Identities=13% Similarity=0.019 Sum_probs=753.6
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 000951 139 SVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLN 218 (1211)
Q Consensus 139 ~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 218 (1211)
+...+-.....+.+.|+++.|...|++..+. .+.+...+..+..++++.|++++|...++++.+.+.. +......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK-DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHH
Confidence 5556666677888999999999999999875 4567788899999999999999999999999987653 4455667789
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 000951 219 WYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQV 298 (1211)
Q Consensus 219 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 298 (1211)
.+...|++++|..++.+......+.+...+..+...+...|++++|...|+.+.+..+. +...+..+...+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHH
Confidence 99999999999999987754444556677888888999999999999999999887653 56788889999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 299 ASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRT 378 (1211)
Q Consensus 299 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~ 378 (1211)
|..+++++.+.. +++...|..+...+...|++++|...|++..+.+ +.+..++..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 5678889999999999999999999999998764 45677888899999999999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000951 379 NGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY 458 (1211)
Q Consensus 379 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 458 (1211)
... .+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+.++.+.. +.+...+
T Consensus 256 ~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 332 (899)
T TIGR02917 256 KAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQAR 332 (899)
T ss_pred hCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 763 34444555566677899999999999999886422 24455566777889999999999999998864 5566778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 000951 459 STLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTL 538 (1211)
Q Consensus 459 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 538 (1211)
..+...+...|++++|...+..+....+. +...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC
Confidence 88889999999999999999999887654 67888999999999999999999999998764 23667888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951 539 GDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLL 618 (1211)
Q Consensus 539 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 618 (1211)
|++++|++.|+++.+... ........++..+.+.|++++|.+++..+....+. +..++..++..+...|++++|...|
T Consensus 411 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999987642 23445566778899999999999999999876554 6788999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 000951 619 DEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVY 698 (1211)
Q Consensus 619 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 698 (1211)
+++.+.+ +.+...+..+...+...|++++|...|+++++.. +.+..++..+...+...|++++|...+.++.+.+ +
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 9999864 3456678888899999999999999999999864 4567889999999999999999999999997764 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951 699 PDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL 777 (1211)
Q Consensus 699 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 777 (1211)
.+...+..++..|.+.|++++|..+++++.+. .+.+..+|..++.+|...|++++|+..|+++.+. .| +...+..+
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 641 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL 641 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 56677888999999999999999999999864 3447889999999999999999999999999984 45 55677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch
Q 000951 778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF 857 (1211)
Q Consensus 778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 857 (1211)
+.++...|++++|..+++++.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+..++..+...|++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 899999999999999999999852 3457788999999999999999999999998765 45678899999999999999
Q ss_pred hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM 937 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 937 (1211)
++|+..|+++++ ..|+..++..++.++.+.|++++|.+.++++.+. .+.+..++..++.+|...|++++|...|+++
T Consensus 720 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999999 6677788889999999999999999999999876 3677889999999999999999999999999
Q ss_pred HhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 938 LRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 938 ~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
++..|. ++.++..++.++...|+ .+|+..++..... .|+.. .+..++.+|...|++++|.++++++.+.+.. ++
T Consensus 797 ~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 797 VKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 998865 89999999999999999 8899998877655 77554 7788999999999999999999999885433 66
Q ss_pred hhHHHHHHHHHhcccchHHHHHHHHHHH
Q 000951 1017 TTYSVLIDAISKKENNLVKGEILLKDIQ 1044 (1211)
Q Consensus 1017 ~~~~~l~~~~~~~~~~~~~a~~~~~~l~ 1044 (1211)
..+..+...+.+.|+.++ |+.+++.+.
T Consensus 872 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 898 (899)
T TIGR02917 872 AIRYHLALALLATGRKAE-ARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHh
Confidence 899999999999999988 777776653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-28 Score=315.38 Aligned_cols=673 Identities=12% Similarity=0.070 Sum_probs=414.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCC
Q 000951 286 LINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAK 365 (1211)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 365 (1211)
.+..+-..++.+.|.+.++++.... +.|...+..++..+.+.|+.++|.+.+++..+.. |+...+..+..
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~------- 103 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRT------- 103 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHH-------
Confidence 3455667788888888888877653 3356677777788888888888888888887753 44333211110
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHH
Q 000951 366 FDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLI-TFSVLINGFCKVGMTRKAKAVLC 444 (1211)
Q Consensus 366 ~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~ 444 (1211)
..... .|+......+...+.+.|++++|.+.|+.+.+.. +|+.. ....+.......|+.++|+..|+
T Consensus 104 ----------~~~~~-~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 104 ----------TMLLS-TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred ----------HHHhc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 00011 2233333444555666666666666666666542 12211 11111111123466666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC
Q 000951 445 KMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPN 524 (1211)
Q Consensus 445 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 524 (1211)
++.+.. +.+...+..+...+...|+.++|+..++.+...... + ...+...+..+...+..++
T Consensus 172 ~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~----------------~~aa~~~~~~l~~~~~~~~ 233 (1157)
T PRK11447 172 RLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-R----------------DAAAQLWYGQIKDMPVSDA 233 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-h----------------HHHHHHHHHHHhccCCChh
Confidence 666653 334455555666666666666666666666543211 0 0111111112211111111
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951 525 S-ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA 603 (1211)
Q Consensus 525 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 603 (1211)
. ..+...+..+-.......|...+.++......|+... ......+...|++++|...|+++++..+. +..++..+..
T Consensus 234 ~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~ 311 (1157)
T PRK11447 234 SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQ 311 (1157)
T ss_pred hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 1 1222222222222233445555554443322232221 12234455667777777777776665544 5666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951 604 ETCKSGNLWEAIVLLDEMVQFNLLP-DRYTYT------------ILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT 670 (1211)
Q Consensus 604 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 670 (1211)
.|.+.|++++|+..|++.++..... +...|. .....+.+.|++++|+..|+++++.. +.+...+.
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~ 389 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVL 389 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 7777777777777777766543211 111111 12334566778888888888877753 33455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHH
Q 000951 671 CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP--------SLATYNIL 742 (1211)
Q Consensus 671 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l 742 (1211)
.+...+...|++++|++.|+++++.. +.+...+..+...|. .++.++|..+++.+....... ....+..+
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 77777777888888888887776652 233455555666554 456777777776553221000 12235566
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951 743 LHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 821 (1211)
+..+...|++++|++.|+++++ ..|+ ...+..+...|...|++++|+..++++++.. +.+...+..+...+...|+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence 7778888888888888888887 4563 4456667788888888888888888887742 2345555556666777888
Q ss_pred HHHHHHHHHHHHHCCCCCCh---------hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCC
Q 000951 822 MGKAFDLFNIMNMLGVVPDT---------NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGN 891 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 891 (1211)
+++|+..++++......++. ..+..++..+...|+.++|+.+++. .| +...+..++..+...|+
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCC
Confidence 88888888776432211111 1233556778889999999988872 34 44677889999999999
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
+++|++.|+++++.. |.+..++..++.+|...|++++|++.++++++..+. +...+..++.++...|++++|.++++.
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999998763 667788899999999999999999999998887654 777888899999999999999999887
Q ss_pred HHhcCC-CC----chHHHHHHHHHHHhCCChhHHHHHHHHHHH-cCCccC
Q 000951 972 MELSGV-KL----DVVSYNVLISGLCANGDVMPAFELYEEMKH-KGLCPN 1015 (1211)
Q Consensus 972 ~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~g~~p~ 1015 (1211)
+....- .| +...+..++.++...|++++|+..++.... .|+.|.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 765421 11 112556678889999999999999988643 455543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-27 Score=311.10 Aligned_cols=653 Identities=14% Similarity=0.059 Sum_probs=453.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------------CCCHhhHHHH
Q 000951 362 KHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGL---------------NPDLITFSVL 426 (1211)
Q Consensus 362 ~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------~p~~~~~~~l 426 (1211)
..++.+.|.+.+.++.... +.+..++..++..+.+.|+.++|.+.++++.+..+ .|+......+
T Consensus 40 ~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 3344444444444444332 22333344444444444444444444444443311 2333334555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 000951 427 INGFCKVGMTRKAKAVLCKMYRDGLVPNKII-YSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK 505 (1211)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 505 (1211)
...+.+.|++++|...|+++.+.. +|+... ...........|+.++|+..++.+....+. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 667888999999999999988753 444321 111112223458999999999999887665 66778888889999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 000951 506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS-IFTYGSLLKGLCKGGNLKEAKRFLN 584 (1211)
Q Consensus 506 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 584 (1211)
.++|+..++++.... +.. ...+...+..+...+..+. ...+...+..+-.....+.|...+.
T Consensus 197 ~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 197 RDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 999999999887632 110 0111111222222111111 1122222222222233445666665
Q ss_pred HhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 000951 585 SLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP 664 (1211)
Q Consensus 585 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 664 (1211)
........+... .......+...|++++|+..|++.++.+ +.+...+..+...+.+.|++++|+..|+++++..+-.+
T Consensus 260 ~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 260 EQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 554443333322 2344677888999999999999999864 33678889999999999999999999999998642222
Q ss_pred CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 000951 665 NNVMF------------TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKL 732 (1211)
Q Consensus 665 ~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 732 (1211)
....+ ......+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|+..|+++.+.
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-- 414 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-- 414 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 22111 233567789999999999999998763 345677788999999999999999999999964
Q ss_pred CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 000951 733 CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP--------DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM 803 (1211)
Q Consensus 733 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 803 (1211)
.| +...+..+...|. .+++++|+..++.+......+ ....+..+...+...|++++|++.++++++.. +
T Consensus 415 ~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P 492 (1157)
T PRK11447 415 DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-P 492 (1157)
T ss_pred CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 45 5777788888775 467899999887654321000 01234556788889999999999999999853 2
Q ss_pred CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-------
Q 000951 804 VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC------- 876 (1211)
Q Consensus 804 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~------- 876 (1211)
.+..++..++.+|.+.|++++|+..|+++.+.. +.+...+..++..+...++.++|+..++++......++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 346778889999999999999999999998743 335666777777788899999999999886542222222
Q ss_pred --hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 877 --TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 877 --~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
..+..++..+...|++++|.++++. .+++...+..++..+.+.|++++|++.|+++++..|. ++.++..++.
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~ 645 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIE 645 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2244667889999999999999872 3667778889999999999999999999999998876 8999999999
Q ss_pred HhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-----hhHHHHHHHHHh
Q 000951 955 KFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-----TTYSVLIDAISK 1028 (1211)
Q Consensus 955 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~ 1028 (1211)
+|...|++++|++.++..... .|+.. .+..++.++...|++++|.++++++.+..-...+ ..+......+..
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999866544 77654 6788899999999999999999998764322111 244445666778
Q ss_pred cccchHHHHHHHHHHHHcCCcc
Q 000951 1029 KENNLVKGEILLKDIQERGFIS 1050 (1211)
Q Consensus 1029 ~~~~~~~a~~~~~~l~~~~~~~ 1050 (1211)
.|+.+++...+.+++...+..|
T Consensus 724 ~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 724 TGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred cCCHHHHHHHHHHHHhhcCCCC
Confidence 8998886666666666555443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.9e-25 Score=273.06 Aligned_cols=659 Identities=11% Similarity=-0.016 Sum_probs=345.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHH
Q 000951 294 GKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLL 373 (1211)
Q Consensus 294 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 373 (1211)
|++++|...|+...+.. +-+..++..|...|.+.|++++|+..+++..+. .|+...|..++..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 66666666666665553 223455566666666666666666666666554 34434333333222 5666666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCCHHHHHHHHH
Q 000951 374 ERMRTNGISISCIAYTSVIDG--------LCKCGLLDEAMQLFNKMFKDGLNPDLITFSVL-INGFCKVGMTRKAKAVLC 444 (1211)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~ 444 (1211)
+++.+.. |.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 6666654 2333444444443 4444 33333333 2222223333333333 666666777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCC-
Q 000951 445 KMYRDGLVPNKIIYSTLIYYFCK-MGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVV- 522 (1211)
Q Consensus 445 ~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~- 522 (1211)
++.+.+ +.+..-...+..+|.. .++ +++..+++. ....+...+..++..|.+.|+.++|..++.++...-..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 776664 3334444555555555 344 555555442 12235666666777777777777777766666543211
Q ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 000951 523 PNSITFDCMIDGYGTLGDGL-KAFSMFDEMVKLGHHPSI-FTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNT 600 (1211)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 600 (1211)
|...+|.-+ ..+.+... .|..-|.+ ...++. .....++..+.+.+.++.++++.. ..+. +. . .
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~-~--~ 345 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA----TLPA-NE-M--L 345 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc----CCCc-ch-H--H
Confidence 333333333 22333221 11111111 011111 111223555666666665554421 1111 11 1 1
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Q 000951 601 ILAET--CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSK-RTFSPNNVMFTCLVDGLF 677 (1211)
Q Consensus 601 li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 677 (1211)
..... ...+...+|...+..|.+.. +-+.....-+.....+.|+.++|..+|++.... +...++......++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 11111 12355666666666666531 123333333444455677777777777776651 111223334446666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCh
Q 000951 678 KAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA---NDLLSTMRSRKLCP--SLATYNILLHGYSKKKDL 752 (1211)
Q Consensus 678 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 752 (1211)
+.+......++..-.. +++...- +.-.|+..++ ...+..+... .++ +...|..++.++.. +++
T Consensus 425 ~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 425 SHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred hCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCc
Confidence 6665333222211110 0111100 1112333222 2223333221 122 45566666666665 666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951 753 LMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM 832 (1211)
Q Consensus 753 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 832 (1211)
++|+..|.+... ..|+......+..++...|++++|+..++++... +|+...+..++.++.+.|++++|.+.|+++
T Consensus 493 ~eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667776666665 3455443333344445667777777777766542 333344555566666777777777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH
Q 000951 833 NMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV 912 (1211)
Q Consensus 833 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 912 (1211)
++.. ++....+..+...+...|++++|+..|+++++ ..|+...+..++.++.+.|++++|+..|+++++.. |.+..
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~ 644 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN 644 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 6543 11222222333333444777777777777776 66666666777777777777777777777776652 55556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL 991 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 991 (1211)
+++.++.++...|++++|+..|+++++..|. ++..+..++.++...|++++|+..|+...+. .|+.. +....++..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH
Confidence 6667777777777777777777777776654 6667777777777777777777776655544 66543 555666666
Q ss_pred HhCCChhHHHHHHHHHH
Q 000951 992 CANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 992 ~~~g~~~~a~~~~~~~~ 1008 (1211)
....+++.+.+.++...
T Consensus 722 ~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666655543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.3e-24 Score=267.31 Aligned_cols=679 Identities=11% Similarity=0.003 Sum_probs=351.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000951 223 KGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRV 302 (1211)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 302 (1211)
.|++++|+..|+...+.. +-+..++..|...|...|++++|...+++..+..+ -|...+..+ . ..++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a---~i~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-A---AIPVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-H---HhccChhHHHH
Confidence 377777777777776643 22355566666666777777777777766666533 233333333 1 12666666677
Q ss_pred HHHHHhCCCCCChHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHH-HHHHHhcCChHHHHHHH
Q 000951 303 FDEMSMLNFSPNSITYNELIDG--------HCCKGNFKEAFRLLAMMEEMGLRPNEVSYGAL-LNGFCKHAKFDLARSLL 373 (1211)
Q Consensus 303 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~l~ 373 (1211)
++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+.... .+.|...++++.|..++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 77766653 2233334433333 4444 33333333 2222223334433333 56666666666666666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 000951 374 ERMRTNGISISCIAYTSVIDGLCK-CGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLV 452 (1211)
Q Consensus 374 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 452 (1211)
.++.+.+ +.+......|...|.. .++ ++|..++... ++-+...+..+...|.+.|+.++|..++.++...-..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 6666665 2334445555556655 355 5555554432 2235566666666666666666666666665432111
Q ss_pred -CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHH
Q 000951 453 -PNKIIYSTLIYYFCKMGKVT-EAMKVYAVMNRNAQGSD-HFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFD 529 (1211)
Q Consensus 453 -p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 529 (1211)
|...++-.+ +.+.+... .|..-|.. . ..++ ....-.++..+.+.+.++.+.++..
T Consensus 280 ~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 337 (987)
T PRK09782 280 DAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA--------------- 337 (987)
T ss_pred CCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc---------------
Confidence 333222222 22222221 01111100 0 0000 0111122344444444443332211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcC
Q 000951 530 CMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSG 609 (1211)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 609 (1211)
+.|.......-..+....+...++.+.+..+.+..+. +......+.-...+.|
T Consensus 338 --------------------------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 338 --------------------------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNG 390 (987)
T ss_pred --------------------------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 1222211100000111223444444444444443222 3333333333444555
Q ss_pred CHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 000951 610 NLWEAIVLLDEMVQF--NLLPDRYTYTILLAGLCRKGK---VVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKA 684 (1211)
Q Consensus 610 ~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 684 (1211)
+.++|.++|+..... +-.++......++..|...+. ..++..+-..+ +...- +.-.|+..+
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~------~~~~~~~~~ 456 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL--------PLAEQ------RQWQSQLPG 456 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc--------ccchh------HHHHhhhhh
Confidence 666666666555441 011122223345555555544 22222221111 11000 111223322
Q ss_pred HHHH---HHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 000951 685 AMHI---SKIMDKEGVYP--DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLL 759 (1211)
Q Consensus 685 A~~~---~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (1211)
+... +..+... .++ +...|..+..++.. |+.++|...+.+.... .|+......++.++...|++++|+..|
T Consensus 457 ~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 457 IADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2222 2222211 022 44555556655554 6666677766666543 344333333444445677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951 760 NTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP 839 (1211)
Q Consensus 760 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 839 (1211)
+++.. ..|+...+..++.++.+.|++++|..+++++++.. +.+...+..+.......|++++|+..|+++++. .|
T Consensus 533 rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P 607 (987)
T PRK09782 533 QKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--AP 607 (987)
T ss_pred HHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC
Confidence 77654 23444445556666677777777777777777643 112222223333344457777777777777764 35
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951 840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV 918 (1211)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~ 918 (1211)
+...|..++.++.+.|++++|+..|+++++ ..|+. ..+..++.++...|++++|+..|+++++. .|.+..++..++
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA 684 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLA 684 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 566777777777777777777777777777 67754 66777777777778888888888777765 255666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD 996 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 996 (1211)
.++...|++++|+..|+++++..|. +..+....+.......+++.|.+.++..... +|+..+....+..+...++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTF--SFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CccchhccccchHhhhccc
Confidence 7888888888888888888777654 6667777777777777777777766544433 5655544444444444443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-28 Score=256.98 Aligned_cols=450 Identities=17% Similarity=0.124 Sum_probs=207.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc
Q 000951 529 DCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS 608 (1211)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 608 (1211)
..|..-..+.|++.+|.+.....-..+ +.+......+-..+....+++...+.-....+..+. -..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHh
Confidence 334444455666666665544433221 111222222222334444444443333333333222 234455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 000951 609 GNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVM-FTCLVDGLFKAGQSKAAMH 687 (1211)
Q Consensus 609 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 687 (1211)
|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.++++ +.|+... .+.+...+-..|+.++|..
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHH
Confidence 55555555555555532 11233455555555555555555555555555 3344322 2223333333455555555
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951 688 ISKIMDKEGVYPD-TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 688 ~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
.|.++++. .|. ...|..|...+..+|+...|+..|++.. .+.| -...|..|+..|...+.+++|+..|.+++.
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 55554433 222 2334444444445555555555555554 2344 244455555555555555555555555444
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hh
Q 000951 766 GLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TN 842 (1211)
Q Consensus 766 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 842 (1211)
..|+ .+.+..+...|.++|..|.|++.|+++++ ..|+ +..|+.|..++-..|+..+|.+.|++++.. .|+ ..
T Consensus 281 -lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 281 -LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred -cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 3342 23344444455555555555555555544 2333 344555555555555555555555555432 122 44
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
+.++|+.+|...|++++|..+|.++++ +.|+. ...+.|+..|-++|++++|+..|++++... |.-..+++.++..|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHH
Confidence 445555555555555555555555554 44442 444555555555555555555555554331 22233445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
...|+.+.|+..|.+++..+|. -+.+..+|+.+|...|+.++|++.|+.... ++||.+ +|.+++.++.--.+|.+-
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccch
Confidence 5555555555555555544432 344445555555555555555555443332 245443 444444444444444443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-24 Score=245.21 Aligned_cols=612 Identities=12% Similarity=0.057 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000951 471 VTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIG--VVPNSITFDCMIDGYGTLGDGLKAFSMF 548 (1211)
Q Consensus 471 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (1211)
++.|.+.|..+.+..+. ++-..-.-.......+++..|+.+|...+... ..||+ .-.+...+.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHH
Confidence 57777777777766443 44444333444556677888888887765432 23333 222335556778888888888
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHH---HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 000951 549 DEMVKLGHHPSI-FTYGSLLKGL---CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF 624 (1211)
Q Consensus 549 ~~m~~~~~~p~~-~~~~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 624 (1211)
.+.++. .|+. .++..|...- .....+..+...+.......+. ++.+.+.|...|...|++..+..+...+...
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 888764 3432 2222221111 1223466677777777666554 7788888888888999999999888888774
Q ss_pred CCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 000951 625 NLLP--DRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD 700 (1211)
Q Consensus 625 ~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 700 (1211)
...- -..+|..+..+|...|++++|..+|.+..+.. |+ ...+..|+..+.+.|+++.+...|+.+.+. .+.+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~ 375 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNN 375 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Ccch
Confidence 3111 12336778888888999999999998888743 44 455677888999999999999999988765 2444
Q ss_pred HHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH----HCCCCCCHH
Q 000951 701 TIAFNAVMDGFSRMG----NMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMK----MEGLLPDKL 772 (1211)
Q Consensus 701 ~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~ 772 (1211)
..+...|...|...+ ..+.|..++.+..+. .+.|...|..+...+....-+. ++..|..+. ..+-.+...
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHH
Confidence 566667777777654 557777777777754 2237888888888776644444 477777655 334446777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hh
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAE---GTMVD------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TN 842 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 842 (1211)
..|.++..+...|++.+|...+..+... ...+| ..+-..+..++...++++.|.+.|..+++.. |. ..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHH
Confidence 8888888888999999999999888765 12223 2345567778888889999999999988742 43 45
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRG 920 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~ 920 (1211)
.|.-++..-...++..+|..+++.+++ ++. ++..+..+++.+.....|.-|.+-|+.+.+.. ..+|..+.-.||..
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 555555444556788899999999887 433 44667777888888889999999888886432 23566666677776
Q ss_pred HHhc------------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 000951 921 LAHC------------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLI 988 (1211)
Q Consensus 921 ~~~~------------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 988 (1211)
+.+. +.+++|+++|.++++.+|. |..+-+.+|.+++..|++.+|..+|.+.++... -...+|.+++
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 5432 5688999999999999877 999999999999999999999999999887632 2456899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcccCCCCcccchhhhHHHH
Q 000951 989 SGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERGFISWNWDGSTQHLHEGLINA 1067 (1211)
Q Consensus 989 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 1067 (1211)
.+|...|+|-.|+++|+...++-...+. .....+..+++..|.+.++.+.++.++......+. ........
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~--------v~FN~a~v 759 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS--------VKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch--------HHhHHHHH
Confidence 9999999999999999986654445544 89999999999999999988888888888765442 22233344
Q ss_pred HHHH-HHhhhhccCCCCCChhHHhhCchhHHHHHHHHHHHHHHHhhhccCCCC
Q 000951 1068 LRKL-KSFKKNRRNNAKIDPTFMEALPEDLLAEVLASQQASSIAQGLAHHGEG 1119 (1211)
Q Consensus 1068 l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~ 1119 (1211)
+.++ .+.++.-.. . .+++...|.+.+.+.++|+.|+.++++
T Consensus 760 ~kkla~s~lr~~k~---t--------~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 760 LKKLAESILRLEKR---T--------LEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhcccc---c--------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455 444333221 1 122223333334488899999999998
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-27 Score=255.41 Aligned_cols=459 Identities=14% Similarity=0.133 Sum_probs=302.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 000951 564 GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRK 643 (1211)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 643 (1211)
..|..-..+.|++.+|++--..+-..++. +....-.+-..+.+..+++....--...++.+ +.-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 33445556667777777665555443332 22333334445556666666555444444432 23455677777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHH
Q 000951 644 GKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNA-VMDGFSRMGNMMMAN 721 (1211)
Q Consensus 644 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~ 721 (1211)
|++++|+.+|+.+++. .|+ ...|..+..++...|+.+.|.+.|.+.++. .|+.....+ +....-..|++++|.
T Consensus 130 g~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777773 443 567777777777777777777777777654 555544333 334444577777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 722 DLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 722 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 799 (1211)
..+.+.++. .| -.+.|..|+..+..+|+...|++.|+++.. ++|+- .+|..|+..|.+.+.+++|+..|.+++.
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 777777743 45 356677777777777777777777777776 56643 4666777777777777777777777776
Q ss_pred cCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-
Q 000951 800 EGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC- 876 (1211)
Q Consensus 800 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~- 876 (1211)
..|+ ..++-.+...|..+|.++-|+..|+++++ +.|+ ++.|++|+.++...|+..||+..|++++. ..|+.
T Consensus 281 --lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~ha 354 (966)
T KOG4626|consen 281 --LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHA 354 (966)
T ss_pred --cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccH
Confidence 3444 44566666677777777777777777775 3455 66777777777777777777777777777 67764
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
.+.+.|+++|..+|..++|..+|.++.+. .+.-..+++.|+.+|.++|++++|+..|+++++..|. -+.++.++|..|
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ 432 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHH
Confidence 67777777777777777777777777765 3455666777777777777777777777777775543 556777777777
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHH---Hhccc
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAI---SKKEN 1031 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~---~~~~~ 1031 (1211)
...|+...|++.|... ..++|... +..+|+++|..+|...+|+.-|+..++ ++||. ..+..+...+ +....
T Consensus 433 ke~g~v~~A~q~y~rA--I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRA--IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHhhhHHHHHHHHHHH--HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 7777777777775533 33467544 667777777777777777777777754 56666 5555555443 23333
Q ss_pred chHHHHHHHHHHHH
Q 000951 1032 NLVKGEILLKDIQE 1045 (1211)
Q Consensus 1032 ~~~~a~~~~~~l~~ 1045 (1211)
.++.-.+++..+++
T Consensus 509 ~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 509 YDKRMKKLVSIVRD 522 (966)
T ss_pred hHHHHHHHHHHHHH
Confidence 34434444444443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.5e-22 Score=224.37 Aligned_cols=554 Identities=12% Similarity=0.025 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951 401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRD--GLVPNKIIYSTLIYYFCKMGKVTEAMKVY 478 (1211)
Q Consensus 401 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 478 (1211)
++.|...|...++.. ++|+-.+---.......|++-.|+.+|..++.. ...||+.. .+..++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 466666666666552 223333322223334556677777777665443 23444332 2334555667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 479 AVMNRNAQGSDHFTCNMLVASLCKG---GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG 555 (1211)
Q Consensus 479 ~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (1211)
..++..++. ++.++-.|...-... ..+..+...+...-... .-|++..+.|.+.|.-.|++..++.+...+....
T Consensus 223 ~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 766665442 333333332222222 23344444444444332 2356667777777777777777777777766543
Q ss_pred CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 000951 556 HHP--SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTY 633 (1211)
Q Consensus 556 ~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 633 (1211)
..- -...|-.+..++-..|+++.|...|....+..+......+..++++|.+.|+++.+...|+++.+.. +.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence 111 1234556677777777777777777777665554334555667777777888888887777777653 3345556
Q ss_pred HHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHH
Q 000951 634 TILLAGLCRKG----KVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM----DKEGVYPDTIAFN 705 (1211)
Q Consensus 634 ~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~ 705 (1211)
..|...|...+ ..+.|..+..+.++.. +.|...|..+...+.... ...++.+|..+ ...+-.+.+...|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66666666554 4566677777766643 445666766666655443 33336655544 3444456677777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HH
Q 000951 706 AVMDGFSRMGNMMMANDLLSTMRSR---KLCPSL------ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CH 775 (1211)
Q Consensus 706 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~ 775 (1211)
.+.......|++.+|...|...... ..++|. .+-..+...+...++.+.|.+.|..++. ..|.-+. |.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHH
Confidence 7777777778888888777777643 122222 2344566666677777888888888777 3465543 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHh-
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKR- 853 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 853 (1211)
.++..-...+...+|...++.++.. -..++.++..++..|.+...+..|.+-|....+.- ..+|+.+.-+|++.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 3333333446777777777777764 23455666667777777777777777666554421 12455555666665542
Q ss_pred -----------hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 854 -----------IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 854 -----------~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
.+..++|+++|.++++ .+|.+ .+-+.++..+...|++.+|..+|.++.+.. .....+|-.++++|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHH
Confidence 3456677777777777 67743 666677777778888888888888877653 34556677778888
Q ss_pred HhcCCHHHHHHHHHHHHhCCc-ccCHHHHHHHHHHhhhhCCHHHHHHHH
Q 000951 922 AHCGKVEEAMLVLNRMLRMRL-VPTIATFTTLIHKFCKEAKFVDALKLK 969 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~-~p~~~~~~~L~~~~~~~g~~~~A~~~~ 969 (1211)
..+|+|-.|+++|+..++.-. ..+..++..|+.++.+.|.+.+|.+..
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888888888888887776533 226677777888888888888887763
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.3e-19 Score=221.33 Aligned_cols=429 Identities=11% Similarity=-0.046 Sum_probs=268.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951 527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC 606 (1211)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 606 (1211)
.+......+.+.|++++|+..|++.++ +.|+...|..+..+|.+.|++++|.+.+..+++..+. +...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 345566677778888888888887775 3566677777777777888888888888887776654 5667777788888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951 607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM 686 (1211)
Q Consensus 607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 686 (1211)
..|++++|+..|......+.. +......++.-+.. ..+.......++.. +++...+..+.. +........+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHH-HHHHccCCcch
Confidence 888888888777666543211 11111111111111 12233333333322 222222222222 22111111111
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHH
Q 000951 687 HISKIMDKEGVYPDT-IAFNAVMDG---FSRMGNMMMANDLLSTMRSRK-LCP-SLATYNILLHGYSKKKDLLMCSMLLN 760 (1211)
Q Consensus 687 ~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (1211)
.-+....+. .++. ..+..+... ....+++++|...|+++.+.+ ..| +...|+.++..+...|++++|+..|+
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111110 1110 001111110 123467888888888887643 234 45677777888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951 761 TMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP 839 (1211)
Q Consensus 761 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 839 (1211)
++++ +.|+ ...|..+..++...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++++.. +.
T Consensus 356 kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 356 KSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 8877 4564 4466677777888888888888888887752 2346677778888888888888888888887643 23
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH------
Q 000951 840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV------ 912 (1211)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~------ 912 (1211)
+...|..++.++.+.|++++|+..|+++++ ..|+ ...+..++.++...|++++|++.|+++++.....+..
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 466677788888888888888888888887 6675 4677778888888888888888888887653211111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.+...+..+...|++++|.++++++++.+|. +..++..++.++...|++++|+..|+...+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1111122333457888888888888877654 5667788888888888888888887766544
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.9e-19 Score=219.92 Aligned_cols=427 Identities=14% Similarity=0.019 Sum_probs=277.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951 562 TYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC 641 (1211)
Q Consensus 562 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 641 (1211)
.+......+.+.|++++|...|.++++..+ +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP--DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344556666777777777777777766544 45566677777777777777777777777643 224456666777777
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951 642 RKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMAN 721 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 721 (1211)
..|++++|+..|..+....... ......++..+.. ..+........+.. +++...+..+.. |........+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 7777777777776655433111 1111111111111 12222222222221 111112222222 22211111111
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHH---HccCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 000951 722 DLLSTMRSRKLCPS-LATYNILLHGY---SKKKDLLMCSMLLNTMKMEG-LLP-DKLTCHSLILGFCETGMLEVGFKFLK 795 (1211)
Q Consensus 722 ~~~~~~~~~~~~p~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 795 (1211)
.-+.... ...|+ ...+..+...+ ...+++++|++.|+++++.+ ..| ....++.++..+...|++++|+..++
T Consensus 278 ~~~~~~~--~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSN--ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccc--ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111 11111 11122222111 23467889999999988754 234 33567777788888999999999999
Q ss_pred HHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC
Q 000951 796 KMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP 874 (1211)
Q Consensus 796 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p 874 (1211)
++++. .|+ ...+..++.++...|++++|++.|+++++.. +.+...|..++..|...|++++|+..|+++++ +.|
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P 430 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDP 430 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCc
Confidence 99884 444 5577888888999999999999999888753 34578888899999999999999999999988 778
Q ss_pred Ch-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH-----HH
Q 000951 875 KC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI-----AT 948 (1211)
Q Consensus 875 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~-----~~ 948 (1211)
+. ..+..++.++.+.|++++|+..|+++++. .+.+..++..++.++...|++++|++.|+++++..+..+. ..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 64 67888889999999999999999998865 3666788888899999999999999999999987654211 11
Q ss_pred HHHHH-HHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 949 FTTLI-HKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 949 ~~~L~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+...+ ..+...|++++|+.+++..... .|+.. .+..++.+|...|++++|++.+++..+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22222 2334468999999988766554 67655 678888899999999999999988765
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.6e-19 Score=214.96 Aligned_cols=322 Identities=12% Similarity=0.063 Sum_probs=147.0
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMM 719 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 719 (1211)
+.+.|++++|..+++..+... +-+...+..++.+....|++++|...++.+.... +.+...+..+...+.+.|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444432 1112223333333334444444444444443331 1223334444444444455555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951 720 ANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMI 798 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 798 (1211)
|...++++.+. .| +...+..++.++...|++++|...++++... .|+.......+..+...|++++|+..++.++
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444432 23 3444444555555555555555555544432 2222111111122444555555555555544
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhh----HHHHHHHHHHcCCCC
Q 000951 799 AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQE----SHFVLRGMAEKGLTP 874 (1211)
Q Consensus 799 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e----A~~~~~~~~~~g~~p 874 (1211)
+....++......++.++...|++++|++.|+++.+.. +.+...+..++..|...|++++ |+..|+++++ ..|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P 281 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNS 281 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCC
Confidence 43222222223333444555555555555555555432 2234444555555555555553 4555555555 445
Q ss_pred Ch-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 875 KC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 875 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
+. ..+..++.++...|++++|...++++++.. +.+..++..++.++.+.|++++|+..|+++++.+|. +...+..++
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a 359 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAA 359 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence 42 455555555555555555555555555442 333444555555555555555555555555554433 333333345
Q ss_pred HHhhhhCCHHHHHHHHHHHH
Q 000951 954 HKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 954 ~~~~~~g~~~~A~~~~~~~~ 973 (1211)
.++...|++++|+..|+...
T Consensus 360 ~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=8.3e-19 Score=212.77 Aligned_cols=356 Identities=8% Similarity=-0.031 Sum_probs=285.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951 642 RKGKVVSALLFFEKVVSKRTFS-PNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 720 (1211)
++.+++.-.-+|....++-.-. .+......++..+.+.|++++|..+++..+... +.+...+..++.++...|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 4455555444454443321011 122334456677889999999999999998763 22344555566677789999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951 721 NDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMI 798 (1211)
Q Consensus 721 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 798 (1211)
...|+++.+. .| +...|..++..+...|++++|+..|+++++ +.|+ ...+..++.++...|++++|...++.+.
T Consensus 96 ~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 96 LQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999964 56 688899999999999999999999999998 5675 4567778899999999999999999987
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hh
Q 000951 799 AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CT 877 (1211)
Q Consensus 799 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~ 877 (1211)
..... +...+..+ ..+...|++++|++.++.+++....++...+..++.++...|++++|+..|+++++ ..|+ ..
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~ 247 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAA 247 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHH
Confidence 75322 23334333 35788999999999999988754334455556667889999999999999999998 6786 47
Q ss_pred HHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQG----AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~e----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
.+..++.++...|++++ |...|+++++.. |.+..++..++.++...|++++|+..++++++..|. ++.++..++
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 88899999999999996 899999999873 667789999999999999999999999999998866 788999999
Q ss_pred HHhhhhCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951 954 HKFCKEAKFVDALKLKGTMELSGVKLDVVS-YNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 954 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
.++...|++++|+..|+.+... .|+... +..++.++...|++++|...++...+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999877765 787654 445677899999999999999998763
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.5e-19 Score=208.20 Aligned_cols=299 Identities=13% Similarity=0.086 Sum_probs=236.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 000951 710 GFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD---KLTCHSLILGFCETG 785 (1211)
Q Consensus 710 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g 785 (1211)
.+...|++++|...|+++.+. .| +..++..++..+...|++++|+.+++.++..+..++ ...+..++..|...|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 355678888888888888754 44 566788888888888888888888888876432221 235667778888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhcchhhHH
Q 000951 786 MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD----TNTQDAIIMGLKRIAAFQESH 861 (1211)
Q Consensus 786 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~ 861 (1211)
++++|+.+++++.+. .+.+..++..++.+|.+.|++++|++.++.+.+.+..+. ...+..++..+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999998888874 234566788888888999999999999988877543322 124567788888999999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 862 FVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 862 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
..|+++++ ..|+ ..++..++..+.+.|++++|.+.|+++.+.+......++..++.+|...|++++|...++++++.
T Consensus 201 ~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988 5675 46788899999999999999999999987643333556788999999999999999999999987
Q ss_pred CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCccChh
Q 000951 941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCA---NGDVMPAFELYEEMKHKGLCPNST 1017 (1211)
Q Consensus 941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~ 1017 (1211)
.| +...+..++..+.+.|++++|..+++.+... .|+...+..+...+.. .|+.+++..++++|.++++.|+|.
T Consensus 279 ~p--~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YP--GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CC--CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 64 4455688999999999999999999877665 7988888777765443 569999999999999988888885
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.2e-17 Score=207.60 Aligned_cols=421 Identities=10% Similarity=-0.018 Sum_probs=220.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951 527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC 606 (1211)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 606 (1211)
...-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++.+++..|. +...+..++..+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33344444555666666666666665421 233444555556666666666666666666555433 3444555555666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951 607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM 686 (1211)
Q Consensus 607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 686 (1211)
..|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++++.. +.+...+..+..++...+..+.|+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHH
Confidence 6666666666666665542 22333 5555555556666666666666666532 222334444555555555555565
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCh---HHHHHH
Q 000951 687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY-----SKKKDL---LMCSML 758 (1211)
Q Consensus 687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~---~~A~~~ 758 (1211)
+.++.+.. .|+.. ..+ . ......++..+ ...+++ ++|++.
T Consensus 171 ~~l~~~~~---~p~~~--~~l--------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 171 GAIDDANL---TPAEK--RDL--------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHhCCC---CHHHH--HHH--------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 55544432 12100 000 0 00000011111 111122 455555
Q ss_pred HHHHHHC-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951 759 LNTMKME-GLLPDKL-TC----HSLILGFCETGMLEVGFKFLKKMIAEGTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNI 831 (1211)
Q Consensus 759 ~~~~~~~-g~~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 831 (1211)
++.+++. ...|+.. .+ ...+.++...|++++|+..|+++++.+.+ |+. ....++..|...|++++|++.|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 5555532 1122111 11 01122334556666666666666654321 221 112235566666666666666666
Q ss_pred HHHCCCCC---ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHHHhcCChhh
Q 000951 832 MNMLGVVP---DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG-----------LTPKC---TQYITLINGMCRVGNFQG 894 (1211)
Q Consensus 832 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~e 894 (1211)
+.+..... ....+..++.++...|++++|+.+++++.+.. ..|+. ..+..++.++...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 55422111 02334445555566666666666666666511 11221 244556667777777777
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 895 AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 895 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
|++.++++... .|.+...+..++.++...|++++|++.++++++..|. +...+..++..+...|++++|+.+++.+.+
T Consensus 378 A~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777655 3555667777777777777777777777777776654 666777777777777777777777776665
Q ss_pred cCCCCchHHHHHHHHH
Q 000951 975 SGVKLDVVSYNVLISG 990 (1211)
Q Consensus 975 ~~~~p~~~~~~~l~~~ 990 (1211)
. .|+......+...
T Consensus 456 ~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 456 R--EPQDPGVQRLARA 469 (765)
T ss_pred h--CCCCHHHHHHHHH
Confidence 5 6766544444433
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.5e-17 Score=206.67 Aligned_cols=414 Identities=10% Similarity=0.003 Sum_probs=304.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 000951 594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV 673 (1211)
Q Consensus 594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 673 (1211)
++....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|+++++.. +.+...+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45555666777778888888888888887532 3455567888888888888888888888888753 34456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 000951 674 DGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDL 752 (1211)
Q Consensus 674 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 752 (1211)
..+...|++++|+..++++++.. +.+.. +..+..++...|+.++|...++++.+. .| +...+..++.++...|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence 88888888888888888887662 33455 777788888888888888888888864 55 566677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHH------HHHHHHHHH-----HhcCCh---HHHHHHHHHHHHc-CCCCCHh-h-H---HHH
Q 000951 753 LMCSMLLNTMKMEGLLPDKL------TCHSLILGF-----CETGML---EVGFKFLKKMIAE-GTMVDCF-T-F---NVL 812 (1211)
Q Consensus 753 ~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~-~---~~l 812 (1211)
++|+..++.+.. .|+.. ....++... ...+++ ++|++.++.+++. ...|+.. . . ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 888888876653 23320 111122222 122334 7889999998864 1222211 1 1 111
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-----hHHHHHHHHH
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNMLGVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-----TQYITLINGM 886 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-----~~~~~l~~~~ 886 (1211)
+.++...|++++|++.|+++.+.+.+ |+ .....++.+|...|++++|+..|+++++ ..|.. .....+..++
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~--~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFY--HPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhh--cCCCCCCCChHHHHHHHHHH
Confidence 23456779999999999999876532 22 2223368899999999999999999987 44432 4566777788
Q ss_pred HhcCChhhHHHHHHHHHHcCC-----------CCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951 887 CRVGNFQGAFKLKDEMEALGI-----------SSS---DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTL 952 (1211)
Q Consensus 887 ~~~g~~~eA~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L 952 (1211)
...|++++|...++++.+... .|+ ..++..++.++...|++++|++.++++++..|. +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 999999999999999986521 122 235567888999999999999999999998766 89999999
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951 953 IHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
+.++...|++++|++.++..... .|+.. .+..++.++...|+|++|..+++.+++ ..|+......+...
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 99999999999999999877665 89765 667888899999999999999999977 45665544444444
No 24
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.86 E-value=2.4e-23 Score=186.52 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=73.4
Q ss_pred cccCCCCcccchhhhHHHHHHHHHHhhhhccCCCCCChhHH-hhCchhHHHHHHHHHHHHHHHhhhccCCCCccccCCCc
Q 000951 1049 ISWNWDGSTQHLHEGLINALRKLKSFKKNRRNNAKIDPTFM-EALPEDLLAEVLASQQASSIAQGLAHHGEGQPVDMDNA 1127 (1211)
Q Consensus 1049 ~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~e~~a~~~~~~ 1127 (1211)
++.|.++|.+||+...+ .+++..+|. ++...+ +++.++....+ +++.+...+++|||||||||||+
T Consensus 8 ~h~F~sgd~shp~~~~~------~~~~~~~~~---~~~~~~~~~~~~e~~~~~----d~~~~~~~~~~HSEKlAiafgli 74 (116)
T PF14432_consen 8 VHSFVSGDRSHPQSELI------NKMKEEGYV---PDTKEVGHDVDEEEKHDY----DEEEKEESLCYHSEKLAIAFGLI 74 (116)
T ss_pred eEEEEeCCCcCccHHHH------HHHHHcCCc---chhhhhCCCchhhhhhhc----ccccchhhhhccHHHHHHHhccc
Confidence 46788899999998444 333445553 222222 11211111111 13345568999999999999999
Q ss_pred ceeeccchhhhhhh-hcCcchhhhhHHHHhhccccceeecCccc
Q 000951 1128 SVIATFPADLCEEK-LFCPCCLLHYLLKLIYQGSKQRVIIGPAV 1170 (1211)
Q Consensus 1128 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1211)
+| ||+||+ |||+|| |+++|+||+++||+|||||+.
T Consensus 75 ~~------~vvkn~~RvC~DC--H~~~K~iS~~~~ReIiVRD~~ 110 (116)
T PF14432_consen 75 NT------RVVKNLKRVCGDC--HSFIKFISKITGREIIVRDSN 110 (116)
T ss_pred ce------eEEecCCccchHH--HHHHHHHHHHHCeEEEEeCCC
Confidence 99 999999 999999 999999999999999999984
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.1e-18 Score=202.81 Aligned_cols=258 Identities=14% Similarity=0.064 Sum_probs=118.9
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD---TIAFNAVMDGFSRMGN 716 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 716 (1211)
+...|++++|+..|.++++.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666665532 22334555555556666666666666655554321111 1234455555555566
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHH
Q 000951 717 MMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK----LTCHSLILGFCETGMLEVGFK 792 (1211)
Q Consensus 717 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~ 792 (1211)
+++|..+|+++.+. .+++..+++.++.++.+.|++++|++.++.+.+.+..+.. ..+..++..+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666655555532 1124455555555555555555555555555543221111 122233444445555555555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951 793 FLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL 872 (1211)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~ 872 (1211)
+++++++.. +.+...+..++..|.+.|++++|++.|+++.+.+......++..++.+|...|++++|...++++++ .
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 555554421 1123344444444555555555555555444322111122334444444444444444444444444 2
Q ss_pred CCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 873 TPKCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 873 ~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
.|+...+..++..+.+.|++++|...++++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333334444444444444444444443
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.1e-14 Score=165.98 Aligned_cols=396 Identities=14% Similarity=0.055 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 000951 246 CTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGH 325 (1211)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 325 (1211)
...-...+.+...|++++|..++.+.++..+. +...|.+|...|-..|+.+++...+-...-.. +.|..-|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33333344445557777777777777766543 56677777777777777777776665544433 34556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHH----HHHHHHHcCCH
Q 000951 326 CCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTS----VIDGLCKCGLL 401 (1211)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~----li~~~~~~g~~ 401 (1211)
.+.|++++|.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-.-. .++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777777777653 33333333445556677777777777777777654333322222 34455566666
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951 402 DEAMQLFNKMFKDG-LNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAV 480 (1211)
Q Consensus 402 ~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 480 (1211)
+.|.+.++.....+ -..+...++.++..|.+...++.|.....++......+|..-+-+-= .++ .-+..
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~ 366 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNA 366 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccc
Confidence 77777777666521 12234556677777777777777777776666533333332221000 000 00000
Q ss_pred H--HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000951 481 M--NRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIG--VVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGH 556 (1211)
Q Consensus 481 ~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 556 (1211)
. ...+..++..+. -+.-++......+....+...+.... +.-++..|.-+..+|...|++.+|+.+|..+.....
T Consensus 367 ~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 0 001112222221 11222233333333333333333333 222334666677777777777777777777766544
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCC
Q 000951 557 HPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF--------NLLP 628 (1211)
Q Consensus 557 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p 628 (1211)
.-+...|-.+..+|...|.+++|.+.|+.++...|. +..+.-.|...+.+.|+.++|.+.+..+... +..|
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 445666777777777777777777777777666554 4555566666777777777777777764421 1233
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 000951 629 DRYTYTILLAGLCRKGKVVSALLFFEKV 656 (1211)
Q Consensus 629 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 656 (1211)
+..........+.+.|+.++=+..-..+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444455566667666644433333
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.1e-14 Score=165.87 Aligned_cols=660 Identities=12% Similarity=0.045 Sum_probs=346.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 000951 321 LIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGL 400 (1211)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~ 400 (1211)
....+.-.|++++|.+++.+..+.. +-+...|.+|...|-..|+.+.+...+-.+...+ +.|...|..+.+...+.|.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 3333444588888888888887764 4466678888888888888888887765555544 5566778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 000951 401 LDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNK----IIYSTLIYYFCKMGKVTEAMK 476 (1211)
Q Consensus 401 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~ 476 (1211)
+++|.-+|.+.++.. +++....---+..|-+.|+...|.+.|.++.+..-+.|. .....++..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888888888763 234333344456677788888888888888776321121 223334555666676677777
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHH
Q 000951 477 VYAVMNRN-AQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCM------IDGYGTLGDGLKAFSMFD 549 (1211)
Q Consensus 477 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l------i~~~~~~g~~~~A~~~~~ 549 (1211)
.++..... +-..+...++.++..|.+...++.|......+......+|..-|.+- -..++..
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~----------- 370 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV----------- 370 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC-----------
Confidence 77766652 22234456677777777777777777776666553333333322110 0000000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 000951 550 EMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP--SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLL 627 (1211)
Q Consensus 550 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 627 (1211)
..+..++..+ ..+.-++......+....+...+.... +..+...|.-+..+|...|++.+|+.+|..+.....-
T Consensus 371 ---~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 371 ---GKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ---CCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0112222222 111122222222222222333333322 3334556666666666667777777666666664433
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCC
Q 000951 628 PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE--------GVYP 699 (1211)
Q Consensus 628 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~ 699 (1211)
.+...|..+..+|...|.+++|.+.|++++... +.+...-..|...+.+.|+.++|.+.+..+... +..|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 445556666666666666777777776666632 222444555556666666777666666664311 1222
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHccCChHHHHH
Q 000951 700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRK-----L-----------------CPSLATYNILLHGYSKKKDLLMCSM 757 (1211)
Q Consensus 700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~-----------------~p~~~~~~~l~~~~~~~g~~~~A~~ 757 (1211)
+....-...+.|.+.|+.++-......|.... + .-.......++.+-.+.++.....+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 604 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEK 604 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhh
Confidence 33333334455566666666554444443210 0 0011122222222233222221111
Q ss_pred HHHH------HHHCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHhcCcHHH
Q 000951 758 LLNT------MKMEGLLPD-K-LTCHSLILGFCETGMLEVGFKFLKKMIAEGT-MVDC----FTFNVLMRKCCEAGEMGK 824 (1211)
Q Consensus 758 ~~~~------~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~ 824 (1211)
-... -...|+.-+ . ..+.-++..+++.+++.+|+.+...+..... ..+. ..-...+.+.+..+++..
T Consensus 605 ~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 605 ALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred cccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 1111 001111111 1 1223344566777888888887777766421 1121 122333456666777778
Q ss_pred HHHHHHHHHHC-CC--CCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHH
Q 000951 825 AFDLFNIMNML-GV--VPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKL 898 (1211)
Q Consensus 825 A~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~ 898 (1211)
|.+..+.+... +. .|. ...|+...+...+.++----...+..... ..|+. ..+..-+.-....+.+.-|+..
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHH
Confidence 87777777642 11 111 33444444444444443333333333333 23322 2222233444566777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 899 KDEMEALGISSSDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
|-++... .|.++.+.-+++.++... -..-.+..++++-.+.... ....+..++|.+|-..|-.--|..
T Consensus 763 y~ra~~~-~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~ 841 (895)
T KOG2076|consen 763 YMRAFRQ-NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS 841 (895)
T ss_pred HHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 7766554 233344433443333211 1133445555554443221 134566677777777777777777
Q ss_pred HHHHHHhcCCCCc------h-------HHHHHHHHHHHhCCChhHHHHHHH
Q 000951 968 LKGTMELSGVKLD------V-------VSYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus 968 ~~~~~~~~~~~p~------~-------~~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
.|+...+. .|- . .+-++|.-+|..+|...-|.++++
T Consensus 842 YYekvL~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 842 YYEKVLEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHhCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 76654433 321 1 122556666777777766666654
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=2e-13 Score=149.06 Aligned_cols=469 Identities=9% Similarity=-0.012 Sum_probs=318.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh----hhCCCCccHHHHHHHHHHHHHcCCH
Q 000951 536 GTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSL----HHIPSAVDTVAYNTILAETCKSGNL 611 (1211)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~ 611 (1211)
.+..-|+.|.+++++..+. ++.+..+|.+....=-..|+.+....++.+. ...|...+...|..=...+-..|..
T Consensus 417 arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3444455555555555442 3444444444444444445555544444332 2234444444454444455555555
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951 612 WEAIVLLDEMVQFNLLPD--RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHIS 689 (1211)
Q Consensus 612 ~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 689 (1211)
-.+..+....+..|+... ..||..-...|.+.+.++-|..+|..+++-. +.+...|......--..|..++-..++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 555555555555444322 2346666666667777777777777776642 334555655555555567777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 000951 690 KIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLL 768 (1211)
Q Consensus 690 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 768 (1211)
+.++.. ++.....|.....-+...|+...|+.++..+.+. .| +...|..-+..-..+.+++.|..+|.++.. ..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 777655 2334455555556666678888888887777754 34 677777777777788888888888888776 45
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 000951 769 PDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII 848 (1211)
Q Consensus 769 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 848 (1211)
|+...|.--+..-..+++.++|++++++.++. ++.-...|--+++++.+.++++.|.+.|..-... ++.....|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 66666665555556678888888888888874 3323557777888888888888888888776542 233456777777
Q ss_pred HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951 849 MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
..=.+.|+.-.|...+++..- .+|+. ..|...+.+-.+.|+.++|..+.-++++. .+.+...|..-+.+..+.++-
T Consensus 727 kleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 777788888888888888887 66754 77888888888999999999998888865 677777888878888788887
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHH
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
..+.+.+++- +-|+.+...++..++...+++.|.+-|...... .||.. +|..+...+...|.-++-.+++++
T Consensus 804 Tks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 804 TKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred hHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7777776652 237778888999999999999999998866544 88776 777777888899998998999888
Q ss_pred HHHcCCccCh-hhHHHHHHHH
Q 000951 1007 MKHKGLCPNS-TTYSVLIDAI 1026 (1211)
Q Consensus 1007 ~~~~g~~p~~-~~~~~l~~~~ 1026 (1211)
... ..|.+ ..|..+....
T Consensus 877 c~~--~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 877 CET--AEPTHGELWQAVSKDI 895 (913)
T ss_pred Hhc--cCCCCCcHHHHHhhhH
Confidence 754 57777 8888887664
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.4e-15 Score=184.12 Aligned_cols=450 Identities=10% Similarity=0.017 Sum_probs=225.9
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 000951 500 LCKGGKVCEAEDYVGHMKRIGVVPNSI-TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKE 578 (1211)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 578 (1211)
..+.|+++.|+..|.+..+. .|+.. ....++..+...|+.++|+..+++.... ..........+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666666554 23321 1115555555556666666666655511 11122223333444555566666
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951 579 AKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS 658 (1211)
Q Consensus 579 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 658 (1211)
|.++++.+.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++++
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 66666666555544 3444455555555556666666665555543 23433333333333334444445555555555
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 000951 659 KRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLAT 738 (1211)
Q Consensus 659 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 738 (1211)
.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ | . .+.|.+..+... ..+..
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~a~---~~~~~-- 259 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRMAV---LPTRS-- 259 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhhcc---ccccc--
Confidence 32 223444455555555555555555443322110 01111000 0 0 000000000000 00000
Q ss_pred HHHHHHHHHccC---ChHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951 739 YNILLHGYSKKK---DLLMCSMLLNTMKME-GLLPDK-LTC----HSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF 809 (1211)
Q Consensus 739 ~~~l~~~~~~~g---~~~~A~~~~~~~~~~-g~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 809 (1211)
... -.+.|+.-++.++.. +..|.. ..| .-.+.++...|++.++++.|+.+...+.+....+-
T Consensus 260 ---------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 260 ---------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred ---------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 000 123344444444431 111211 111 12334556666666666666666665544334455
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-------------
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNMLGV-----VPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG------------- 871 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g------------- 871 (1211)
..++++|...++.++|+.+|+++..... .++......|..+|...+++++|..+++++.+..
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 6666666666667777776666654221 1122223556666666666666666666666511
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
.+||. ..+..++..+.-.|++.+|.+.++++... -|-+......+++++...|...+|+..++.+...+|. +..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHH
Confidence 11222 34445566666777777777777777654 3666667777777777777777777777666665544 566666
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNV 986 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 986 (1211)
.++.++...|+|.+|..+.+.+.+. .|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 7777777777777777766555544 665554333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=3.6e-13 Score=147.04 Aligned_cols=462 Identities=11% Similarity=-0.023 Sum_probs=331.2
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCC
Q 000951 500 LCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEM----VKLGHHPSIFTYGSLLKGLCKGGN 575 (1211)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~ 575 (1211)
|++..-++.|.+++++..+. ++.+...|.+-...--.+|+.+...+++++- ...|+..+...|..=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34444455555555555443 2334455555444444555555555554432 234556666666666666666666
Q ss_pred HHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 000951 576 LKEAKRFLNSLHHIPSAV--DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFF 653 (1211)
Q Consensus 576 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 653 (1211)
.-.+..+....+..|... ...+|+.-.+.|.+.+.++-|+.+|...++- ++-+...|......--.+|..++-..+|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666555432 2457777777888888888888888888774 2335556777666666788888888888
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 000951 654 EKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLC 733 (1211)
Q Consensus 654 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 733 (1211)
++++..- +.....|......+...|+...|..++.++.+.. +.+..+|.+.+..-.....++.|+.+|.+... ..
T Consensus 574 qkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 574 QKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 8888853 4455667777788888899999999888887763 33567888888888888889999999998884 46
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 000951 734 PSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVL 812 (1211)
Q Consensus 734 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 812 (1211)
|+...|..-+..-.-.++.++|++++++.++ ..|+.. .|..+++.+...++.+.|...|..-++. .+.....|-.|
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 7777887777777778889999999988888 567664 5666778888889999999988877764 23335577777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN 891 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 891 (1211)
...-.+.|++-+|..++++..-.+ +.+...|...+.+=.+.|+.+.|..+..++++ --|+. ..|..-+...-+.++
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCccc
Confidence 778888889999999999887655 44678888889988999999999999999988 55654 445555554445554
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
--.....+++ ...|+.+...++..+....++++|.+.|.+++..++. +-.+|-.+...+..+|.-++-.+++..
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333332222 4566777788888899999999999999999998865 667888888889999998888888887
Q ss_pred HHhcCCCCchH
Q 000951 972 MELSGVKLDVV 982 (1211)
Q Consensus 972 ~~~~~~~p~~~ 982 (1211)
.... +|...
T Consensus 877 c~~~--EP~hG 885 (913)
T KOG0495|consen 877 CETA--EPTHG 885 (913)
T ss_pred Hhcc--CCCCC
Confidence 6655 77655
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=2e-15 Score=182.79 Aligned_cols=453 Identities=9% Similarity=0.004 Sum_probs=296.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951 535 YGTLGDGLKAFSMFDEMVKLGHHPSI--FTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW 612 (1211)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 612 (1211)
..+.|+++.|+..|++.++.. |+. ..+ .++..+...|+.++|...+++... +.+........++..|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 446777778888887777643 332 233 666666677777777777777762 22223444444566677777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM 692 (1211)
Q Consensus 613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 692 (1211)
+|+++|+++++... .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 77777777777542 23455556666677777777777777777663 455555544444444455555577777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 000951 693 DKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL 772 (1211)
Q Consensus 693 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 772 (1211)
++.. +.+...+..+..++.+.|-...|.++..+-+.. + +...+..|- .+.|.+..+.. ..|+..
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a----~~~~~~ 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMA----VLPTRS 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhc----cccccc
Confidence 6652 334555566666666677666666555543311 1 111111110 11111111111 111100
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHhh-HHH---HHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAE-G-TMVDCFT-FNV---LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDA 846 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~-~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 846 (1211)
. -. +---.+.|+.-++.++.. + .++.... ... .+-++...|++.++++.|+.+...+.+-...+-..
T Consensus 260 -~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 -E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 00 001234566666666653 1 1222122 222 33478889999999999999998775545567788
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCc
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGL----TP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGI-----------SSS 910 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~----~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-----------~~~ 910 (1211)
++++|...+++++|+.+|++++.... .| +......|..++...+++++|..+.+++.+... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 99999999999999999999986321 12 234457889999999999999999999986311 122
Q ss_pred h---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHH
Q 000951 911 D---VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNV 986 (1211)
Q Consensus 911 ~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ 986 (1211)
+ .....++..+...|++.+|++.+++++...|. |...+..++.++...|++.+|++.++..... .|+.. ....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHH
Confidence 2 24456677888999999999999999998766 9999999999999999999999999876655 88655 7788
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHH
Q 000951 987 LISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLI 1023 (1211)
Q Consensus 987 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 1023 (1211)
.+.++...|+|++|..+.+.+.+ ..|+..+...+.
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~ 524 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD 524 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence 88899999999999999998866 466664444433
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.8e-15 Score=156.62 Aligned_cols=433 Identities=15% Similarity=0.179 Sum_probs=293.1
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhCCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 000951 116 LREGMVEYALETFQLMGFRGFNPSVYTCNMMLSF--MLKDRRVD-SVWLLFDDMLDRKICPNVATFNILINVSCVEGKLK 192 (1211)
Q Consensus 116 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--l~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 192 (1211)
...|.+.++.-+|++|...|++.+...-..|++. |..+.++. .-+++|-.|.+.| ..+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 4568999999999999999988887776666655 33444443 4577888887765 3455555 566554
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951 193 KAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMR 272 (1211)
Q Consensus 193 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (1211)
+ -+|+... -...+|..+|.++||....+.|.+++.+-.....+.+..+||.+|.+-.-. ....++.+|.
T Consensus 197 d--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 197 D--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred H--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 4 3444433 256789999999999999999999999999998999999999999865432 2378999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----
Q 000951 273 KRMITPNEVTYNTLINGFVKEGKIQVAS----RVFDEMSMLNFSPNSITYNELIDGHCCKGNFKE-AFRLLAMMEE---- 343 (1211)
Q Consensus 273 ~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~---- 343 (1211)
+....||..|+|+++++..+.|+++.|+ +++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 9999999999999999999999988755 567889999999999999999999999888754 4444444432
Q ss_pred CCCCc----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 344 MGLRP----NEVSYGALLNGFCKHAKFDLARSLLERMRTNG----ISISC---IAYTSVIDGLCKCGLLDEAMQLFNKMF 412 (1211)
Q Consensus 344 ~g~~p----~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 412 (1211)
..++| |...|...+..|.+..+.+.|.++..-..... ++|+. +-|..+....|.....+.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333 55667788888999999999999987766532 23332 346778888888888899999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000951 413 KDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT 492 (1211)
Q Consensus 413 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 492 (1211)
-+-+-|+..+...++++..-.+.++-.-+++.++...|..-+.....-++. .+.+..+.|+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LLARDKLHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HHhcCCCCCCChH
Confidence 777778888888888888888888888888888887774433333322222 2333333333221
Q ss_pred HHHHHHHHHcCC-ChHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 000951 493 CNMLVASLCKGG-KVCEA-EDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGH----HPSIFTYGSL 566 (1211)
Q Consensus 493 ~~~li~~~~~~g-~~~~A-~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l 566 (1211)
...+-....++- ++.++ ...-.++.... -.....+.+.-.+.+.|..++|.+++..+.+++. .|......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 111111111110 01111 11112233322 2233455555566677777777777777654432 2333333344
Q ss_pred HHHHHcCCCHHHHHHHHHHh
Q 000951 567 LKGLCKGGNLKEAKRFLNSL 586 (1211)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~ 586 (1211)
++.-........|...++.+
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 44444444455555544444
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=3.3e-13 Score=152.59 Aligned_cols=270 Identities=15% Similarity=0.191 Sum_probs=161.1
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000951 128 FQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYV 207 (1211)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 207 (1211)
+-.+...|+.|+..||..++..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344566788899999999999999999998888 8888877777778888899988888888777665 5
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHH
Q 000951 208 PNIVTYNTLLNWYCKKGRYKAAFKLIDC-MASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMR-KRMITPNEVTYNT 285 (1211)
Q Consensus 208 p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ 285 (1211)
|..-||+.|..+|...|++.. ++..++ |. .++..+...|-......++..+. ..+.-||..+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~-- 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA-- 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH--
Confidence 777889999999999998765 222222 11 12223333343333333333321 12233443322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhc
Q 000951 286 LINGFVKEGKIQVASRVFDEMSMLNFS-PNSITYNELIDGHCC-KGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKH 363 (1211)
Q Consensus 286 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 363 (1211)
+.-..-.|-++.+.+++..++..... |-.+ .++-... ...+++-..+.....+ .|+..+|..+++.-...
T Consensus 146 -illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 146 -ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 22234455566666665555432111 1111 1222111 1223333333333322 36777777777777777
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 000951 364 AKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGM 435 (1211)
Q Consensus 364 g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 435 (1211)
|+.+.|..++.+|.+.|++.+..-+-.|+-+ .+....+..++..|.+.|+.|+..|+..-+-.+..+|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777777777777777776666554444443 56666667777777777777777776665555555443
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.75 E-value=2.6e-13 Score=153.47 Aligned_cols=759 Identities=13% Similarity=0.105 Sum_probs=330.4
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 000951 197 LLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMI 276 (1211)
Q Consensus 197 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 276 (1211)
++-.+...|+.||-+||..+|..||..|+.+.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556667778888888888888888888887777 7777777777777778888887777777766654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHhHHHH
Q 000951 277 TPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE-MGLRPNEVSYGA 355 (1211)
Q Consensus 277 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ 355 (1211)
.|...||+.|..+|...|++.. |+...+ -.-.++..+...|.-..-..++..+.- -+.-||..+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~-- 145 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA-- 145 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH--
Confidence 5677788888888888887665 222221 011122223333333333333322211 1222333221
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 000951 356 LLNGFCKHAKFDLARSLLERMRTNG-ISISCIAYTSVIDGLCKCG-LLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKV 433 (1211)
Q Consensus 356 ll~~~~~~g~~~~a~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 433 (1211)
+.-..-.|-++.+.+++..+.... ..|..+ .+.-..... .+++-...-....+ .|+..+|..++..-...
T Consensus 146 -illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 146 -ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 111222333333333333222110 001000 011111111 11111111111111 24555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 000951 434 GMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYV 513 (1211)
Q Consensus 434 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 513 (1211)
|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+..-|...|+.|+..|+...+....++|....+..
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e-- 292 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE-- 292 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--
Confidence 5555555555555555555555444444433 44445555555555555555555555444444444333211111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-----C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 000951 514 GHMKRIGVVPNSITFDCMIDGYGTLG-----D-----GLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFL 583 (1211)
Q Consensus 514 ~~~~~~g~~p~~~~~~~li~~~~~~g-----~-----~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 583 (1211)
| .+....+++-...-.-.| + ..-....+.+..-.|+.....+|..... ....|.-++.+++-
T Consensus 293 ------~-sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlv 364 (1088)
T KOG4318|consen 293 ------G-SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLV 364 (1088)
T ss_pred ------c-cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHH
Confidence 1 111111111111111111 0 0111111222222232222222222221 12245555555555
Q ss_pred HHhhhCC---CCccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951 584 NSLHHIP---SAVDTVAYNTILAETCKSGNLWEAIVLLD--EMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS 658 (1211)
Q Consensus 584 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 658 (1211)
..+..-- ...++..+..+..-|.+.-+..-...++. +.+..+. +....-.+. -+...-+...++.-+.....
T Consensus 365 g~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vs-ell~~lrkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 365 GQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVS-ELLENLRKNSFLRQLVGLSS 441 (1088)
T ss_pred hhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHH-HHHHHhCcchHHHHHhhhhH
Confidence 4443211 11123334444433333211100000000 1111000 000000000 01100011111111111110
Q ss_pred c---CCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 000951 659 K---RTFSP-------NNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMR 728 (1211)
Q Consensus 659 ~---~~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 728 (1211)
. ....| -...-+.++..+++.-+..+++..-+.....- -+ ..|..|++.+....+.+.|..+.++..
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 0 00111 11223444455555555555553333222111 11 456777777777777777777777765
Q ss_pred HCC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 000951 729 SRK--LCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV 804 (1211)
Q Consensus 729 ~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 804 (1211)
... +.-|..-+..+.+...+.+...++..++.++.+.-...+ ..+..-++......|+.+.-.+.++-+...|+..
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 331 122455566677777777777777777777765322222 2233344455556677766666666665554432
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHH
Q 000951 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLIN 884 (1211)
Q Consensus 805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~ 884 (1211)
+ .-++....+.++...|+++++.-.+ ..+|.+.....+...+.+. +-...++..+ +..-+.
T Consensus 599 t----gPl~~vhLrkdd~s~a~ea~e~~~q-kyk~~P~~~e~lcrlv~ke-----~td~~qk~mD---------ls~~iq 659 (1088)
T KOG4318|consen 599 T----GPLWMVHLRKDDQSAAQEAPEPEEQ-KYKPYPKDLEGLCRLVYKE-----TTDSPQKTMD---------LSIPIQ 659 (1088)
T ss_pred c----ccceEEEeeccchhhhhhcchHHHH-HhcCChHHHHHHHHHHHhh-----ccccHHHHHh---------hcchhH
Confidence 1 1222334445555555555543322 1122222222222222110 0000111000 000000
Q ss_pred HHHhcCChhhHHHHHHHHH---HcC---------C---------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 885 GMCRVGNFQGAFKLKDEME---ALG---------I---------SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~---~~~---------~---------~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
.|.+.|++.+|-++.+.-- +.+ + ..+......+...|.+.|++++|..++.++- +.
T Consensus 660 ~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~ 736 (1088)
T KOG4318|consen 660 KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VS 736 (1088)
T ss_pred HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CC
Confidence 1334444444433322110 000 0 0011123346678889999999999998854 56
Q ss_pred cCHHHHHHHHHHhhhhCCHHHHHHHHH-HHHhcCCCCchH--HHHHHHH-HHHhCCCh-hHHHHHHHHHHHcCCccChhh
Q 000951 944 PTIATFTTLIHKFCKEAKFVDALKLKG-TMELSGVKLDVV--SYNVLIS-GLCANGDV-MPAFELYEEMKHKGLCPNSTT 1018 (1211)
Q Consensus 944 p~~~~~~~L~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~--~~~~l~~-~~~~~g~~-~~a~~~~~~~~~~g~~p~~~~ 1018 (1211)
|+......|+.++.++..-.+.-++.. .-+.....|... +.+.-.. ..+-.+.. +.|.+.+....+.-...+...
T Consensus 737 k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ 816 (1088)
T KOG4318|consen 737 KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADE 816 (1088)
T ss_pred cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHH
Confidence 788888999999988765443333321 122222233211 1122222 23334444 467788888777532223366
Q ss_pred HHHHHHHHHhcc
Q 000951 1019 YSVLIDAISKKE 1030 (1211)
Q Consensus 1019 ~~~l~~~~~~~~ 1030 (1211)
+..+...+....
T Consensus 817 ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 817 LSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHHhcC
Confidence 666655554433
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2e-13 Score=141.80 Aligned_cols=361 Identities=13% Similarity=0.173 Sum_probs=203.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 000951 314 NSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVID 393 (1211)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~ 393 (1211)
...+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.- ....+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 4456666666666666666666666666665556666666666654321 122566666666666666666666666
Q ss_pred HHHHcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CC----CCCHHHHHH
Q 000951 394 GLCKCGLLDE----AMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRK-AKAVLCKMYRD----GL----VPNKIIYST 460 (1211)
Q Consensus 394 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~----~p~~~~~~~ 460 (1211)
...+.|+++. |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.+.... -+ +.|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34556667777777777777777777777666533 44444444332 12 234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951 461 LIYYFCKMGKVTEAMKVYAVMNRNA----QGSD---HFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID 533 (1211)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 533 (1211)
.++.|.+..+.+-|.++........ ..++ .+.|..+....|+....+.-...|+.|.-.-+-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 7777778888888887776654321 1111 23455666677777777777777777776666677777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc-CCHH
Q 000951 534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS-GNLW 612 (1211)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 612 (1211)
+....|.++-.-+++.+++..|.........-+ +..+.+..+.|+......+-....++ -++.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei----------------l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI----------------LMLLARDKLHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH----------------HHHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766543332222222 22222222222211111111111110 0111
Q ss_pred HHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH---HHHHHHHHHHHcCCHHHHHHH
Q 000951 613 EAI-VLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV---MFTCLVDGLFKAGQSKAAMHI 688 (1211)
Q Consensus 613 ~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~ 688 (1211)
++. ..-.++.+...+| ...+..+-.+.+.|..++|.+++.-..+++.-.|-.. ...-+++.-...++...|..+
T Consensus 506 e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 111 1122333333332 3334444456677777777777777755543333332 333455555666777777777
Q ss_pred HHHHHhCC
Q 000951 689 SKIMDKEG 696 (1211)
Q Consensus 689 ~~~~~~~g 696 (1211)
++.|...+
T Consensus 584 lQ~a~~~n 591 (625)
T KOG4422|consen 584 LQLASAFN 591 (625)
T ss_pred HHHHHHcC
Confidence 77775543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=8.6e-14 Score=144.87 Aligned_cols=488 Identities=15% Similarity=0.092 Sum_probs=242.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 000951 423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY-STLIYYFCKMGKVTEAMKVYAVMNRNAQGSDH----FTCNMLV 497 (1211)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li 497 (1211)
...|..-|..+....+|+..++-.++...-||.-.. ..+...+.+...+.+|++.|+..+..-+..+. ...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344555566677777888888777777666665433 23445666777788888888777665443332 2334444
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 000951 498 ASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLK 577 (1211)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 577 (1211)
-.+.+.|.+++|+..|+...+. .||..+-..|+-.+...|+-++..+.|.+|+.-...||..-|. +
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~----- 349 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K----- 349 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C-----
Confidence 5567778888888888777664 5777665556666666777777777888877654444432221 0
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHH-----HHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 000951 578 EAKRFLNSLHHIPSAVDTVAYNTI-----LAETCKSG--NLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSAL 650 (1211)
Q Consensus 578 ~A~~~~~~~~~~~~~~~~~~~~~l-----i~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 650 (1211)
..-.|+....+.- +.-..+.. +-++|+-.--+++.--+.||... +| +-.+
T Consensus 350 -----------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcl 406 (840)
T KOG2003|consen 350 -----------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCL 406 (840)
T ss_pred -----------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHH
Confidence 0011121111111 11111111 11111111111111111111110 00 0000
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 000951 651 LFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR 730 (1211)
Q Consensus 651 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 730 (1211)
+.++...- .+.-...-..-...+.++|+++.|+++++-..+...+..
T Consensus 407 e~lk~s~~---~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~------------------------------ 453 (840)
T KOG2003|consen 407 ESLKASQH---AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA------------------------------ 453 (840)
T ss_pred HHHHHhhh---hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh------------------------------
Confidence 00000000 000000000111223445555555555444433221111
Q ss_pred CCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951 731 KLCPSLATYNILLHGYSK--KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT 808 (1211)
Q Consensus 731 ~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 808 (1211)
...-+.|-..+.- -+++.+|.++-+.++... .-+..+...-+..-...|++++|...|++++.....- ...
T Consensus 454 -----saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ea 526 (840)
T KOG2003|consen 454 -----SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEA 526 (840)
T ss_pred -----HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHH
Confidence 1111222111111 123444444444443310 0122222222233334566666666666665532111 122
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 887 (1211)
...++-.+.+.|++++|++.|-++... +..+......+++.|....+...|++++.++.. +-| |+..+..|+..|-
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhh
Confidence 223334455666666666666555321 123455555666666666666666666666655 555 3466667777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH-HhhhhCCHHHHH
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH-KFCKEAKFVDAL 966 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~-~~~~~g~~~~A~ 966 (1211)
+.|+-.+|.+++-..... ++-+.++...|+.-|....-+++|+..|+++.-+ .|+..-|..|+. ++++.|+|+.|.
T Consensus 604 qegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred cccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHH
Confidence 777777777666555443 5666666666776677777777777777776553 366666765554 445667777777
Q ss_pred HHHHHHHhcCCCC-chHHHHHHHHHHHhCC
Q 000951 967 KLKGTMELSGVKL-DVVSYNVLISGLCANG 995 (1211)
Q Consensus 967 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 995 (1211)
++|+..+.. -| |......|.......|
T Consensus 681 d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 777766654 45 3445555555544444
No 37
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.2e-10 Score=127.93 Aligned_cols=844 Identities=14% Similarity=0.096 Sum_probs=401.4
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 000951 112 IRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKL 191 (1211)
Q Consensus 112 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 191 (1211)
...+...|.+++|..+--... +|+-.+..|-+.+-..=...|...--+..|.-+...| +.|..----+++.-..+|+.
T Consensus 367 FneLfaqG~Y~eAAkvAAsSP-rgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rk 444 (1666)
T KOG0985|consen 367 FNELFAQGEYEEAAKVAASSP-RGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRK 444 (1666)
T ss_pred HHHHHhCccHHHHHHHHHhCc-hhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHH
Confidence 344555677777766655433 2344566666666655566666666777777776665 33443333344443344433
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 192 KKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271 (1211)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (1211)
++++.+... +..+++.=+.-..+--+..-|+.++.+.. + -+..+..++..|+++++.-+..
T Consensus 445 ----qLlekWl~E----dKLeCSEELGDlVK~~d~~lAL~iYlrAn---v------p~KVi~cfAE~Gqf~KiilY~k-- 505 (1666)
T KOG0985|consen 445 ----QLLEKWLKE----DKLECSEELGDLVKPYDTTLALSIYLRAN---V------PAKVIQCFAETGQFKKIILYAK-- 505 (1666)
T ss_pred ----HHHHHHhhh----hhhhhhHHhcCccccCCchHHHHHHHHcC---C------cHHHHHHHHHhcchhHHHHHHH--
Confidence 333333321 11111111111111111112222222211 0 1223444455555555444333
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHh
Q 000951 272 RKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEV 351 (1211)
Q Consensus 272 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 351 (1211)
+.|..||...+ +....+ -..+.+.+....|.+.. |...-.+.+.+.+........+..++-...+. ..|+..
T Consensus 506 -KvGyTPdymfl---Lq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g 577 (1666)
T KOG0985|consen 506 -KVGYTPDYMFL---LQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEG 577 (1666)
T ss_pred -HcCCCccHHHH---HHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhh
Confidence 34666664433 222222 46677777666666542 23444566666666666666666666555543 245443
Q ss_pred HH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHH----
Q 000951 352 SY-GALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVL---- 426 (1211)
Q Consensus 352 t~-~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---- 426 (1211)
.. +.++..- ..+ |.++-+.+..++. -+..-+..+...+.+.|-+.+|++.|.++.+- +. .+..+.+
T Consensus 578 ~LQTrLLE~N-L~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pE 648 (1666)
T KOG0985|consen 578 HLQTRLLEMN-LVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPE 648 (1666)
T ss_pred hHHHHHHHHH-hcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHH
Confidence 32 2222221 112 2222222222221 11122556666777777777777777665431 11 1111111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------CCCCCHHHHH
Q 000951 427 -INGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRN-----------AQGSDHFTCN 494 (1211)
Q Consensus 427 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~ 494 (1211)
+..|.-.-.++++.+.++.|+..++.-|..+...+..-|+..--.+.-+++|+....- .+..|+.+.-
T Consensus 649 wLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~ 728 (1666)
T KOG0985|consen 649 WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF 728 (1666)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence 1234444556777777777777777777766666666666655555555555544321 2334555556
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH------------h---------------cCCCCCHHHHH------HHHHHHHhcCCH
Q 000951 495 MLVASLCKGGKVCEAEDYVGHMK------------R---------------IGVVPNSITFD------CMIDGYGTLGDG 541 (1211)
Q Consensus 495 ~li~~~~~~g~~~~A~~~~~~~~------------~---------------~g~~p~~~~~~------~li~~~~~~g~~ 541 (1211)
..|.+-|+.|++.+.+++.++-. + .++.+|.+.|. ..|..|.+.-++
T Consensus 729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp 808 (1666)
T KOG0985|consen 729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP 808 (1666)
T ss_pred HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 66777777777777766544321 1 11222322221 123333332222
Q ss_pred HHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcC
Q 000951 542 LKAFSMFDEMVKLGHHPSIFT------------YGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSG 609 (1211)
Q Consensus 542 ~~A~~~~~~m~~~~~~p~~~~------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 609 (1211)
...-.+...+++-.+.-+ .. ..-|+.-+-+.+++.--...++..+..|.. |+.++|+|...|..++
T Consensus 809 s~~p~VvG~LLD~dC~E~-~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN 886 (1666)
T KOG0985|consen 809 SRTPQVVGALLDVDCSED-FIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN 886 (1666)
T ss_pred cccchhhhhhhcCCCcHH-HHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence 221111111111111000 00 011112222333344444444444444443 5555555555554433
Q ss_pred CHHHH---------------------------------------------------------------------------
Q 000951 610 NLWEA--------------------------------------------------------------------------- 614 (1211)
Q Consensus 610 ~~~~A--------------------------------------------------------------------------- 614 (1211)
+-.+-
T Consensus 887 NnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r 966 (1666)
T KOG0985|consen 887 NNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR 966 (1666)
T ss_pred CChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence 21111
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 615 IVLLDEMVQFNLL--PDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM 692 (1211)
Q Consensus 615 ~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 692 (1211)
+.+.++..+-+++ .|......-+.++...+-+.+-++++++++-....-........|+-.-+-.-+.....++.+.+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 0111111111110 12222233334444555555555555555432211111111111111111111122222222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHHHHHccCC
Q 000951 693 DKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR---------------------KLCPSLATYNILLHGYSKKKD 751 (1211)
Q Consensus 693 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~l~~~~~~~g~ 751 (1211)
.... .|+ +.......+-+++|..+|++.--. .-...+..|..++.+..+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 1110 010 111112223334444444332000 001145677788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951 752 LLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNI 831 (1211)
Q Consensus 752 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 831 (1211)
..+|++-|-++ .|+..|...+....+.|.|++-.+++..+.+..-.|. +-..|+-+|++.+++.+-.+..
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh--
Confidence 88887777443 2556677777788888888888888777776544433 4456777788887777655543
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch
Q 000951 832 MNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD 911 (1211)
Q Consensus 832 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 911 (1211)
..|+.......++-|...|.++.|.-+|..... |..|+..+...|+++.|...-+++- +.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKAn------s~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKAN------ST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhcc------ch
Confidence 246777777777777788888888777776654 6677777777777777766655442 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH
Q 000951 912 VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG 990 (1211)
Q Consensus 912 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 990 (1211)
.+|..+..++...+.+.-|. +--.++--.+.-+..|..-|-..|-++|-+.+++. .+|++.-.- .+.-|+-.
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea--~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA--GLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh--hhchhHHHHHHHHHHHHH
Confidence 45555555555444443332 22222222444555666667777777777777553 334444333 33334434
Q ss_pred HHhCCChhHHHHHHHHHHHcCCcc-------ChhhHHHHHHHHHhcccchHHHHHHH
Q 000951 991 LCANGDVMPAFELYEEMKHKGLCP-------NSTTYSVLIDAISKKENNLVKGEILL 1040 (1211)
Q Consensus 991 ~~~~g~~~~a~~~~~~~~~~g~~p-------~~~~~~~l~~~~~~~~~~~~~a~~~~ 1040 (1211)
|+ .-+.+.-.+.++....+---| ....|.++.-.+.+...++.+|..+.
T Consensus 1323 Ys-kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1323 YS-KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HH-hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 43 334555555555444321111 22566777666666666666554443
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.9e-15 Score=165.53 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=238.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHH
Q 000951 715 GNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP----DKLTCHSLILGFCETGMLEVG 790 (1211)
Q Consensus 715 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A 790 (1211)
-+..+|...|.++.+. +.........++.+|...+++++|..+|+.+.+ ..| +...|.+.++-+-+ +-+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~--~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRR--IEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhHHHHHHHHHHh----hHH
Confidence 3567899999996654 222456667788999999999999999999987 455 44566666655422 334
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
+.++.+-+-.--+..+.+|-+++++|.-+++.+.|++.|+++++. .| ...+|..++.-+.....+|+|...|+.++.
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 444443332222334789999999999999999999999999974 45 578899999999999999999999999998
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHH
Q 000951 870 KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIAT 948 (1211)
Q Consensus 870 ~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~ 948 (1211)
++|.+ .+|..++..|.++++++.|.-.|+++.+.+ |.+.++..+++..+.+.|+.++|+++|+++..+++. |+..
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 88976 899999999999999999999999999874 778888899999999999999999999999999988 9999
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 949 FTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 949 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
-...+.++...+++++|+..++.+++. .|+.. .+..++.+|..-|+.+.|+..+--+.+ ++|..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCcc
Confidence 999999999999999999999999987 89766 788889999999999999999988855 56655
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-13 Score=145.63 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=168.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHH
Q 000951 782 CETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESH 861 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 861 (1211)
.-.|+.-.|..-++.+++....+ ...|..+..+|....+-++-...|+.+...+ +.++.+|..-+.++.-.+++++|+
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44678888888888888753222 2237777778888888888888888887654 345778888888888888899999
Q ss_pred HHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 862 FVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 862 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
.-|++.+. ++|.. ..|..++-+..+.++++++...|+.+.+. +|..++.|+..+.++...++++.|.+.|+.++++
T Consensus 415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998888 88865 77888888888888899999999888866 7888888888888888888899999999988887
Q ss_pred Ccc-------cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 941 RLV-------PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 941 ~~~-------p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.+. +.+.+.-.++..-++ +++.+|+.+++.. ..++|... +|.+|+..-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA--~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA--IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 123333334333344 8888888886644 44478655 788888888888889999988887643
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6e-14 Score=145.99 Aligned_cols=453 Identities=13% Similarity=0.081 Sum_probs=284.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHH
Q 000951 531 MIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTY-GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD----TVAYNTILAET 605 (1211)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~ 605 (1211)
|.+.|.....+.+|+..|+-+++....|+...+ ..+.+.+.+..++..|.++++-.+..-+..+ ..+.+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455555556666666666655555554322 1223344555566666666666555433332 34555566667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH--------HHHHHHHHHH
Q 000951 606 CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV--------MFTCLVDGLF 677 (1211)
Q Consensus 606 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~ 677 (1211)
.+.|.+++|+..|+...+. .|+..+-..|+-++..-|+-++-.+.|.+++.-. ..||.. .-..|+.--.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip-~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP-GEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC-CCCCcccccCCcCCcchHHHHHHH
Confidence 7888888888888887774 4777775555555666788888888888887643 122211 1111221111
Q ss_pred HcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 000951 678 KAG-----------QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHG 745 (1211)
Q Consensus 678 ~~g-----------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 745 (1211)
+.. +-++++-.-..++.--+.|+... +| +-..+.+..-. ..| -...-..-..-
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~---~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQ---HAELAIDLEINKAGE 428 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhh---hhhhhhhhhhhHHHH
Confidence 111 11112111112222112222110 00 00111111110 001 00001112345
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951 746 YSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE--TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG 823 (1211)
Q Consensus 746 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 823 (1211)
|.++|+++.|+++++-.....-+.-..+-+.|.-.+.- ..++..|.++-+.++... .-+......-++.-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 78899999999999887765333323333334333322 456788888888776531 123334444445556779999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
+|.+.|++++..+ ..-+....+++-.+...|+.++|+..|-++.. +-- +...+..+++.|....+..+|++++-++
T Consensus 508 ka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 508 KAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999998532 12245566677778899999999999988664 433 3477889999999999999999999988
Q ss_pred HHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 903 EALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 903 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
... ++.|+.++..|++.|.+.|+...|.+.+-...+.-|. |..+...|+.-|..-.-++.|+..|+.... +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 766 7889999999999999999999999887766665444 888888899999999999999999886554 489988
Q ss_pred HHHHHHH-HHHhCCChhHHHHHHHHHHH
Q 000951 983 SYNVLIS-GLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 983 ~~~~l~~-~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
-|..++. ++.+.|.+..|...|+..-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8865555 77789999999999988743
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.6e-13 Score=145.28 Aligned_cols=225 Identities=13% Similarity=0.010 Sum_probs=183.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951 743 LHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 743 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 821 (1211)
+.-+.-.|++-.|.+-|+..++ +.|.... |..+..+|....+.++..+.|+++...+ +.++.+|...++++.-.++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 3345668999999999999998 4553333 7778889999999999999999998853 2357789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951 822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
+++|..-|++.+... +.+...|-.+.-+..+.++++++...|++..+ .-|+ ++.|+..+.++..++++++|.+.|+
T Consensus 410 ~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999998743 22467788888888899999999999999998 6776 4889999999999999999999999
Q ss_pred HHHHcCCC-------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 901 EMEALGIS-------SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 901 ~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
.+++.... +.+.+...++....+ +++.+|.++++++++.+|. ...++.+|+......|+.++|+++|+...
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99865322 112222333333333 8899999999999999877 77899999999999999999999998665
Q ss_pred hc
Q 000951 974 LS 975 (1211)
Q Consensus 974 ~~ 975 (1211)
.+
T Consensus 565 ~l 566 (606)
T KOG0547|consen 565 QL 566 (606)
T ss_pred HH
Confidence 44
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.8e-13 Score=144.81 Aligned_cols=281 Identities=10% Similarity=-0.001 Sum_probs=213.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 000951 697 VYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCH 775 (1211)
Q Consensus 697 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 775 (1211)
...+........+-+...+++.+..++++.+.+. .++....+..-+.++.+.|+..+-..+-.++.+ ..| ...+|.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchh
Confidence 3556666677777888889999999999998864 233555555556688888888888878788887 455 567898
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI 854 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 854 (1211)
+++--|.-.|++++|.++|.++.. +.|. ...|-.++..|.-.|+.++|...|..+.+.- +....-+..++.-|.+.
T Consensus 317 aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 888888888999999999999876 4444 4578888899999999999999888876521 22233455567778888
Q ss_pred cchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC--chHHHHHHHHHHHhcCCH
Q 000951 855 AAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISS--SDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 855 g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~ 927 (1211)
++.+-|...|.++.. +.| |+..+..++-...+.+.+.+|..+|+.+++. +.+. -...++.+|+++.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999998887 888 4577778888888888999999999888622 1111 123577888899999999
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLI 988 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 988 (1211)
++|+..|++++.+.+. +..++.++|.+|...|+++.|++.|... +.+.|+...-..++
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHH
Confidence 9999999999888777 8888888999999999999999987744 45588775443333
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.3e-12 Score=132.67 Aligned_cols=385 Identities=12% Similarity=0.036 Sum_probs=267.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH-HHH
Q 000951 520 GVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDT-VAY 598 (1211)
Q Consensus 520 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 598 (1211)
+...|...+-...-.+.+.|....|+..|...+.. .+-.-..|..|...+ .+.+.+ ..+....+..+. ..-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVGLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhcCcccchHHHH
Confidence 33456555555566677888999999999888753 222333444333322 222222 222211221111 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 000951 599 NTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSP-NNVMFTCLVDGLF 677 (1211)
Q Consensus 599 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 677 (1211)
--+..++......+++++-.+.....|++.+...-+-...+.....++++|+..|+++.+..+..- |..+|..++- .
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 234445556668888998888888888765555555555566778999999999999998753332 3567776653 3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHH
Q 000951 678 KAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCS 756 (1211)
Q Consensus 678 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 756 (1211)
++.+-. +..+.+-.-.--+-.+.|...+..-|+-.++.++|...|++..+ ++| ....|..++.-|+..++...|+
T Consensus 309 ~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHH
Confidence 332222 22222211111133456777788888889999999999999995 577 5788999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC
Q 000951 757 MLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML 835 (1211)
Q Consensus 757 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 835 (1211)
+.|+.+++ +.| |-.+|..|+++|.-.+...-|+-+|+++.+- -+.|...|.+|+++|.+.++.++|++.|+++...
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999 677 8889999999999999999999999999984 3447899999999999999999999999999875
Q ss_pred CCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHc----C-CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 000951 836 GVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK----G-LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISS 909 (1211)
Q Consensus 836 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----g-~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 909 (1211)
+ ..+...+..|+..|.+.++.++|...|.+-++. | +.|.. .+...|+.-+.+.+++++|..+-......
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~---- 536 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG---- 536 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----
Confidence 4 235578899999999999999999999987762 2 33322 44445677777778877777664444321
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
....+||..+++++...
T Consensus 537 --------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 --------------ETECEEAKALLREIRKI 553 (559)
T ss_pred --------------CchHHHHHHHHHHHHHh
Confidence 22366777777666543
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.67 E-value=2.8e-11 Score=136.15 Aligned_cols=429 Identities=12% Similarity=-0.030 Sum_probs=239.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHH
Q 000951 524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAV-DTVAYNTIL 602 (1211)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li 602 (1211)
|...|..+.-+....|+++.+.+.|++.... .......|..+...+...|.-..|..+++......+.| |+..+....
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4444444545555555555555555554432 22233444455555555555555555555444433222 222222222
Q ss_pred HHHH-HcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHh----C-------CChHHHHHHHHHHHHcCCCCCCH
Q 000951 603 AETC-KSGNLWEAIVLLDEMVQF--NL--LPDRYTYTILLAGLCR----K-------GKVVSALLFFEKVVSKRTFSPNN 666 (1211)
Q Consensus 603 ~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~----~-------g~~~~A~~~~~~~~~~~~~~p~~ 666 (1211)
..|. +-+..+++++.-.+++.. +. .-....+..+.-+|.. . -...++++.++++++.++..|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 2222 234455555444444431 00 0112223333333321 1 12356788888888877666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951 667 VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY 746 (1211)
Q Consensus 667 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 746 (1211)
..|.++ -|+..++.+.|.+..++.++.+-..+...|..|.-.+...+++.+|+.+.+...+. ...|......-+..-
T Consensus 481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhh
Confidence 666554 46677889999999999988866778888988888888899999999998887753 111222222222333
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcC---c
Q 000951 747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAE--GTMVDCFTFNVLMRKCCEAG---E 821 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~ 821 (1211)
..-++.++|+.....++.. --+..... ..++-....+....+.-. .......++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 4467788888777776651 10111111 111111112222211111 00011222222222111111 1
Q ss_pred HHHHHHHHHHHHHCCCCC--C------hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951 822 MGKAFDLFNIMNMLGVVP--D------TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF 892 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 892 (1211)
.+.. +....+.| + ...|...+..+...++.++|...+.++.. +.|- ...|...+..+...|++
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence 1111 11111122 2 22455666677777888888877777776 6664 36677777788888888
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML--VLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
+||.+.|..+...+ |.+..+..+++.++.+.|+..-|.+ ++..+++.+|. +...|..||.++.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHH
Confidence 88888888887663 5566677788888888887665655 88888887766 88888888888888888888888887
Q ss_pred HHHhc
Q 000951 971 TMELS 975 (1211)
Q Consensus 971 ~~~~~ 975 (1211)
....+
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 66555
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.6e-11 Score=126.13 Aligned_cols=438 Identities=11% Similarity=0.035 Sum_probs=288.3
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 000951 501 CKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAK 580 (1211)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 580 (1211)
...+++..|..+|+..+... ..+...|...+.+=.++.+...|..++++.+..=...| ..+--.+.+=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHH
Confidence 33445555555555555433 23445555555555556666666666666554311111 22222333334456666777
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 000951 581 RFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR 660 (1211)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 660 (1211)
++|++..+.. |+...|++.|..-.+...++.|..+|++..- +.|++.+|.-....-.++|...-|..+|+.+++.-
T Consensus 162 qiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 7776665543 4666777777777777777777777777664 34777777766666667777777777777776632
Q ss_pred CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCh---HHHHHH-----HHHH
Q 000951 661 TFSPN---NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD--TIAFNAVMDGFSRMGNM---MMANDL-----LSTM 727 (1211)
Q Consensus 661 ~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~~-----~~~~ 727 (1211)
..+ ...+.+....-..++.++.|.-+|+.+++.- +.+ ...|.....-=-+-|+. ++++-- ++.+
T Consensus 238 --~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 238 --GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 111 2234444444455677777888887776652 222 23333333222233443 333322 3344
Q ss_pred HHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHH--------HHHHHhcCChHHHHHHHHH
Q 000951 728 RSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK--LTCHSL--------ILGFCETGMLEVGFKFLKK 796 (1211)
Q Consensus 728 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l--------~~~~~~~g~~~~A~~~~~~ 796 (1211)
.+. +| |..+|...+..-...|+.+...++|.+++.+ +.|-. ..|.-. +-.-....+.+.+.++|+.
T Consensus 315 v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 315 VSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 433 45 8889999998888899999999999999975 56622 222211 1112356889999999999
Q ss_pred HHHcCCCCCHhhHHHHHHH----HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951 797 MIAEGTMVDCFTFNVLMRK----CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL 872 (1211)
Q Consensus 797 ~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~ 872 (1211)
.++. ++...+++..+=-+ -.++.++..|.+++-.++ |.-|..-++...+..=.+.++++....+|++.++ .
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~ 466 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--F 466 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 9983 44445555544333 446789999999998887 4567788888888888899999999999999999 8
Q ss_pred CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 873 TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 873 ~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
.|. ..+|...+..-...|+++.|..+|+-+++...- .....|...++.-...|.+++|..+|++.++.. +...+|.
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 885 488999999889999999999999999865432 234467788888888999999999999999864 4667898
Q ss_pred HHHHHhh
Q 000951 951 TLIHKFC 957 (1211)
Q Consensus 951 ~L~~~~~ 957 (1211)
+++.--.
T Consensus 545 sFA~fe~ 551 (677)
T KOG1915|consen 545 SFAKFEA 551 (677)
T ss_pred hHHHHhc
Confidence 8776433
No 46
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.65 E-value=7.1e-09 Score=114.79 Aligned_cols=757 Identities=15% Similarity=0.130 Sum_probs=375.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 000951 112 IRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKL 191 (1211)
Q Consensus 112 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 191 (1211)
+-.|-...+|++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++-.. .| | + ...|..|.+.|.+
T Consensus 564 igmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s---dg---d--~-laaiqlyika~~p 631 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKES---DG---D--G-LAAIQLYIKAGKP 631 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhccc---cC---c--c-HHHHHHHHHcCCc
Confidence 3344455555555554432 23333334455667777777777666544221 11 1 1 2456677777777
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 192 KKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271 (1211)
Q Consensus 192 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (1211)
..|......-. .+..|......+..++.+..-+++|-.+|+++.. | ...+..+-+-.-+-+|.++-+-.
T Consensus 632 ~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 632 AKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred hHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh
Confidence 76654332111 1123444445555666666666777777766642 1 11122222222234444433322
Q ss_pred HHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 000951 272 RKRMITPNEVTY-NTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNE 350 (1211)
Q Consensus 272 ~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 350 (1211)
++..+++. .....-+...|+++.|..-|-+... ...-|.+-.....+.+|+.+++.+.... .-.
T Consensus 701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 11112221 1223445566777777777655421 2233555667788888888888877653 223
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 000951 351 VSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGF 430 (1211)
Q Consensus 351 ~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 430 (1211)
--|..+..-|+..|+++.|.++|.+. + .++--|++|.+.|++++|.++-++.. |.......|-+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 34677778888899999998887543 2 35567888999999999988877764 3344566677767777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 000951 431 CKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAE 510 (1211)
Q Consensus 431 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 510 (1211)
-+.|++.+|.+++-.. | .|+. .|.+|-+.|..++.+++.+.-. ...-..+..-+..-|-..|++..|+
T Consensus 835 dehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHH
Confidence 7888888888877433 2 3443 3567778888887777655431 1112234555666777788888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 000951 511 DYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP 590 (1211)
Q Consensus 511 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (1211)
..|-+..+ |.+-++.|...+.+++|..+-+. .| ..+..-.... .+++.=--+.|.++++..
T Consensus 903 ~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~f--lwaksiggdaavkllnk~---- 963 (1636)
T KOG3616|consen 903 EHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAF--LWAKSIGGDAAVKLLNKH---- 963 (1636)
T ss_pred HHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHH--HHHHhhCcHHHHHHHHhh----
Confidence 77755442 55666777777777777655432 12 1111111111 112211122333333221
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951 591 SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT 670 (1211)
Q Consensus 591 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 670 (1211)
-....-++.-+..+.++-|.++-+-..+.. .|.+. ..+..-+-..|++++|-+.|-++++.+ .-..||.
T Consensus 964 -----gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaikln---tynitwc 1032 (1636)
T KOG3616|consen 964 -----GLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLN---TYNITWC 1032 (1636)
T ss_pred -----hhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcc---cccchhh
Confidence 011222333344455555555444333321 12221 112222345666666666666555532 1111111
Q ss_pred H-------------------HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 671 C-------------------LVDGLFKAGQSKAAMHISKIMDKEGVYPD--TIAFNAVMDGFSRMGNMMMANDLLSTMRS 729 (1211)
Q Consensus 671 ~-------------------l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 729 (1211)
. -+.++.+..+|..|.++-+.- .|+ +.++..-.......|++..|+.++-+..
T Consensus 1033 qavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~kae~fllran- 1106 (1636)
T KOG3616|consen 1033 QAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN- 1106 (1636)
T ss_pred hcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchhhhhhheeecC-
Confidence 1 112334444455554443221 121 1223333333344566666665554432
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----------------HHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 000951 730 RKLCPSLATYNILLHGYSKKKDLLMCSMLLNTM----------------KMEGLLPDKLTCHSLILGFCETGMLEVGFKF 793 (1211)
Q Consensus 730 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 793 (1211)
.|+.. ++.|...+-|.+|+++-+.. .++|.. ....+..-..-..+.|+|.+|...
T Consensus 1107 ---kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~ 1177 (1636)
T KOG3616|consen 1107 ---KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDA 1177 (1636)
T ss_pred ---CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHH
Confidence 34432 23344455555555543322 122211 112233334455667777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhcchhhHHHHHHHHHHcC
Q 000951 794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT--NTQDAIIMGLKRIAAFQESHFVLRGMAEKG 871 (1211)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g 871 (1211)
+-++.+.... -..|+.- .+++|-++--+.+ .|+. ....+.+.++...|..+.|-+++-..-.
T Consensus 1178 ~lkinrdst~-----nd~l~e~-----~~~kaadl~ikfl----~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~-- 1241 (1636)
T KOG3616|consen 1178 LLKINRDSTD-----NDALAEH-----CTEKAADLSIKFL----MGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL-- 1241 (1636)
T ss_pred HhhhccCCCC-----cHHHHHH-----HHHHHHhhhhhhc----CCccchhhHHhcchhhhcccccHHHHHHHHHhhh--
Confidence 6665442211 1122211 1223322222211 1221 2222222333333444443333322110
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHH---------------HHHHHHcCCCCchH---HHHHHHHHHHhcCCHHHHHHH
Q 000951 872 LTPKCTQYITLINGMCRVGNFQGAFKL---------------KDEMEALGISSSDV---AESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~---------------~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
-..-++++++...|.+|.++ |++.++..-..+.. -.-..++++..+++|++|++.
T Consensus 1242 -------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idt 1314 (1636)
T KOG3616|consen 1242 -------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDT 1314 (1636)
T ss_pred -------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHH
Confidence 11223344444444444333 33332211111111 112346788899999999987
Q ss_pred HHHHHhCCcccCHHHHHHH-HHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHH-HHHhCC-ChhHHH
Q 000951 934 LNRMLRMRLVPTIATFTTL-IHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLIS-GLCANG-DVMPAF 1001 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L-~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~-~~~~~g-~~~~a~ 1001 (1211)
+...++.|-..-|..+ +..+.+.|+...|+.++.+--+ ..+| +...|..+.. .+++-| +.++|.
T Consensus 1315 ---ak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga-~anpanfniyk~i~ed~lakpgt~~~eay 1382 (1636)
T KOG3616|consen 1315 ---AKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGA-PANPANFNIYKLIFEDMLAKPGTNCAEAY 1382 (1636)
T ss_pred ---HHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCC-CCCcccccHHHHHHHHHhcCCCcchHHHH
Confidence 6667777744444443 3456788999999998765332 2345 3335655554 555555 455544
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.3e-12 Score=133.22 Aligned_cols=195 Identities=11% Similarity=-0.006 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGM 886 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~ 886 (1211)
+.-.+++-|.-.++.++|+..|+++++.+ +.....|..++.-|...++...|++.|+.+++ ++| |..+|..|+.+|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHH
Confidence 34444445555555666666666665432 12244555566666666666666666666665 555 345666666666
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951 887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL 966 (1211)
Q Consensus 887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~ 966 (1211)
.-.+-..=|+-+|+++.+. -|.|+..|..||.+|.+.++.++|++.|.+++..+-. +..++..|+..|-+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666666666554 2445556666666666666666666666666655422 3355666666666666666666
Q ss_pred HHHHHHHhcC-----CCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 967 KLKGTMELSG-----VKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 967 ~~~~~~~~~~-----~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
..|....+.. +.|+.. +...|+.-+.+.++|++|.......
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5554333211 222222 2233444555666666666555444
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=1.4e-10 Score=130.64 Aligned_cols=130 Identities=15% Similarity=0.028 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL 991 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 991 (1211)
.|...++.+.+.++.++|...+.++....+. .+.+|+..|..+-..|.++||.+.|..... ++|+.. +...++.++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 5667788889999999999999999887765 888999999999999999999999875554 499665 889999999
Q ss_pred HhCCChhHHHH--HHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHHHHcC
Q 000951 992 CANGDVMPAFE--LYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDIQERG 1047 (1211)
Q Consensus 992 ~~~g~~~~a~~--~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~ 1047 (1211)
...|+-.-|.. +...+.+ +.|.. ..|+.++..+.+.|+...+++.+..+++-..
T Consensus 729 le~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99997777777 7777765 66755 9999999999999999997777776664443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=8.3e-14 Score=154.23 Aligned_cols=201 Identities=13% Similarity=0.041 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 000951 770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII 848 (1211)
Q Consensus 770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 848 (1211)
.+.+|.+++..|.-+++.+.|++.|++++. ++| ...+|..++.=+....++|.|...|+.++... +..-..|..++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 345566666666666666666666666655 344 24455555555556666666666666665422 12245666777
Q ss_pred HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951 849 MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
..|.++++++.|+-.|+++++ ++|.. +....++..+.+.|+.|+|+.+|+++.... +.++..-...+.++...+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcch
Confidence 777777777777777777777 77754 556666777777777778888877777653 44555555667777777888
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL 979 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p 979 (1211)
++|+..++++.+.-|. +..++..+|.+|.+.|+.+.|+.-|.-+..+ +|
T Consensus 574 ~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l--dp 622 (638)
T KOG1126|consen 574 VEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL--DP 622 (638)
T ss_pred HHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC--CC
Confidence 8888888887776554 6677777888888888888887776655444 55
No 50
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6.2e-08 Score=111.49 Aligned_cols=730 Identities=14% Similarity=0.119 Sum_probs=358.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc
Q 000951 110 LLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVA-TFNILINVSCVE 188 (1211)
Q Consensus 110 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~ 188 (1211)
.+++.+.+ -..+.+.+....|.+. .|...-.+.+.+.+...+....+..+.-+..+. ..|+.. .-+.++..-..
T Consensus 515 flLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~- 589 (1666)
T KOG0985|consen 515 FLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLV- 589 (1666)
T ss_pred HHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhc-
Confidence 34444444 4456666555554432 223344555555666666666666666665543 233332 22333322211
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHH
Q 000951 189 GKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNM----FIDDLCRNNRSAKG 264 (1211)
Q Consensus 189 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A 264 (1211)
.|-++-+.+.-.+.. +..-+..+.+.|-+.|-+..|++.+..+.+- +..++.-+. -+-.+...-.++++
T Consensus 590 ----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 590 ----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDS 662 (1666)
T ss_pred ----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHH
Confidence 122222222222111 1222667777888888888888777665431 111111111 12344555567788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------CCCCChHHHHHHHHHHHhcCCHHH
Q 000951 265 YLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSML-----------NFSPNSITYNELIDGHCCKGNFKE 333 (1211)
Q Consensus 265 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~g~~~~ 333 (1211)
.+.++.|...++..|..+.-.+..-|+..=-.+.-.++|+..++. ++.-|....-..|.+-|+.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 888888888777777777766666677666666666777665432 223344455566777777777777
Q ss_pred HHHHHHHHHHCCCCcCHhHHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 000951 334 AFRLLAMMEEMGLRPNEVSYGALLNGFC--------KHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAM 405 (1211)
Q Consensus 334 A~~~~~~m~~~g~~p~~~t~~~ll~~~~--------~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 405 (1211)
..++.++-. +-.-..+-|.+-.+-. -..+++-..++.-.+-..+ ....|..|.+.=+....-
T Consensus 743 vERicresn---~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn-------~~kyIE~yVQkvNps~~p 812 (1666)
T KOG0985|consen 743 VERICRESN---CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNN-------LQKYIEIYVQKVNPSRTP 812 (1666)
T ss_pred HHHHHhccc---cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhh-------HHHHHHHHHhhcCCcccc
Confidence 776654421 1101111111110000 0000000000000000000 001122222221111111
Q ss_pred HHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-
Q 000951 406 QLFNKMFKDGLNP-----------DLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTE- 473 (1211)
Q Consensus 406 ~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~- 473 (1211)
.+...+++..+.- ....-.-|..-.-+.++..--...++.....| ..|..+++.+...|..+++-.+
T Consensus 813 ~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~ 891 (1666)
T KOG0985|consen 813 QVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER 891 (1666)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH
Confidence 2222221111100 01111233344445566666666777777777 5678888888888876654332
Q ss_pred HHH---HHHH------HHHcCCCC----------CH---------HHHHHHHHHHHcCCChHHH-----------HHHHH
Q 000951 474 AMK---VYAV------MNRNAQGS----------DH---------FTCNMLVASLCKGGKVCEA-----------EDYVG 514 (1211)
Q Consensus 474 A~~---~~~~------~~~~~~~~----------~~---------~~~~~li~~~~~~g~~~~A-----------~~~~~ 514 (1211)
-++ .|+. -.++++.. |. ..+-....-+.+..+.+-- +.+.+
T Consensus 892 fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiD 971 (1666)
T KOG0985|consen 892 FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLID 971 (1666)
T ss_pred hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHH
Confidence 111 1110 00111100 11 1111122222222222211 11222
Q ss_pred HHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 000951 515 HMKRIGV--VPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLG--HHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIP 590 (1211)
Q Consensus 515 ~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (1211)
+....++ ..|+.....-+.++...+-+.+-++++++++-.. +.-+...-+.|+-.-.+ .+.....+..+++-..+
T Consensus 972 qVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD 1050 (1666)
T KOG0985|consen 972 QVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD 1050 (1666)
T ss_pred HHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC
Confidence 2222211 1233344445666777777777777777765321 11111112222222222 23334444444443322
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 000951 591 SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFT 670 (1211)
Q Consensus 591 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 670 (1211)
.+ .+.......+-+++|..+|++.-. +....+.|+. .-+..+.|.++-++.- ....|.
T Consensus 1051 a~-------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWs 1108 (1666)
T KOG0985|consen 1051 AP-------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWS 1108 (1666)
T ss_pred ch-------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHH
Confidence 11 133444556667777777776532 3444444442 3455666666655542 234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 000951 671 CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK 750 (1211)
Q Consensus 671 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 750 (1211)
.+..+-.+.|...+|++-|-.. .|+..|.-+++...+.|+|++-...+..++++.-.|... ..|+-+|.+.+
T Consensus 1109 qlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 7777777888888877665433 356677778888888888888888777777665455443 35667777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 000951 751 DLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFN 830 (1211)
Q Consensus 751 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 830 (1211)
+..+-.++. ..|+.......+.-|...+.++.|.-+|..+- .|..|...+...|++..|.+.-+
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 766544433 34666666777777777888887777776432 45666667777777777776655
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 000951 831 IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT--PKCTQYITLINGMCRVGNFQGAFKLKDEMEALGIS 908 (1211)
Q Consensus 831 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 908 (1211)
++. +.-+|.....+|...+.+.-|.. -|+. -...-...++.-|...|-++|-+.+++..+-.. .
T Consensus 1245 KAn------s~ktWK~VcfaCvd~~EFrlAQi-------CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-R 1310 (1666)
T KOG0985|consen 1245 KAN------STKTWKEVCFACVDKEEFRLAQI-------CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-R 1310 (1666)
T ss_pred hcc------chhHHHHHHHHHhchhhhhHHHh-------cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-H
Confidence 542 34566666666655444332221 1221 122334555666666666666666666554221 1
Q ss_pred CchHHHHHHHHHHHh
Q 000951 909 SSDVAESAMVRGLAH 923 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~ 923 (1211)
.....+..++-.|.+
T Consensus 1311 AHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHHHHh
Confidence 223334444444443
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=9.9e-10 Score=116.26 Aligned_cols=422 Identities=12% Similarity=0.065 Sum_probs=198.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 000951 433 VGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDY 512 (1211)
Q Consensus 433 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 512 (1211)
++++..|..+|++++.-. ..+...|...+.+-.+...+..|..+++.++..-+..|. .|-..+.+--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 344444455554444432 233333444444444455555555555554443332222 222233333344555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 000951 513 VGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSA 592 (1211)
Q Consensus 513 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 592 (1211)
|++-.+- .|+..+|++.|+.=.+-...+.|..+|++.+- +.|++.+|......=.+.|++..+..+|..+.+.-..
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5554442 45555555555555555555555555555543 3455555555555555555555555555554432111
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCh---HHHH-----HHHHHHHHcC
Q 000951 593 --VDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPD--RYTYTILLAGLCRKGKV---VSAL-----LFFEKVVSKR 660 (1211)
Q Consensus 593 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~---~~A~-----~~~~~~~~~~ 660 (1211)
.+...+.++...-.++..++.|..+|.-.++. ++.+ ...|..+...--+-|+. ++++ --|++.++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 12334445555555556666666666665553 1111 12233333222233332 2222 1234444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH----H-H-H--HhcCChHHHHHHHHHHHHC
Q 000951 661 TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT--IAFNAVM----D-G-F--SRMGNMMMANDLLSTMRSR 730 (1211)
Q Consensus 661 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li----~-~-~--~~~g~~~~A~~~~~~~~~~ 730 (1211)
+-|..+|--.++.-...|+.+...++|+.++.. ++|-. ..|..-| + + | ....+.+.+.++++..++
T Consensus 319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 344555555555555566666666666666543 23311 1111111 0 0 0 124555556666665554
Q ss_pred CCCC-CHHHHH----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 000951 731 KLCP-SLATYN----ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD 805 (1211)
Q Consensus 731 ~~~p-~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 805 (1211)
+-| ...|+. ..+.--.++.+...|.+++..++- .-|-.-++...+..-.+.+++|....+|++.++-+ +.+
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~ 470 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PEN 470 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHh
Confidence 233 222222 222233345556666666555553 34555555555555555566666666666666532 223
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
..+|...+..-...|+.+.|..+|.-+++.. +.-....|-+.++-=...|.+++|..+|++.++
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 4555555555555566666666666555421 111123344444444455666666666666655
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=3.1e-12 Score=147.59 Aligned_cols=288 Identities=11% Similarity=0.021 Sum_probs=210.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHH
Q 000951 713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEV 789 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~ 789 (1211)
..|+++.|.+.+.+..+. .|+ ...+...+.++.+.|+++.|.+.+.++.+. .|+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 478888888888887754 454 344455567788889999999999888763 35442 33334677788899999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH---HHHHHHHhhcchhhHHHHHHH
Q 000951 790 GFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD---AIIMGLKRIAAFQESHFVLRG 866 (1211)
Q Consensus 790 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~ 866 (1211)
|...++++.+.. +.+..+...++.+|...|++++|.+.++.+.+.+..++..... .....+...+..+++...+.+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999988863 3356678888888999999999999998888765433222111 112222344555566667777
Q ss_pred HHHcCCCC-----ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH-H-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 867 MAEKGLTP-----KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV-A-ESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 867 ~~~~g~~p-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
+.+ ..| +...+..++..+...|+.++|.+.+++.++.. +++.. . ...........++.+.+++.+++.++
T Consensus 251 ~~~--~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWK--NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHH--HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 776 344 56788888899999999999999999998763 22221 1 11222233445778899999999998
Q ss_pred CCcccCH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 940 MRLVPTI--ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 940 ~~~~p~~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
..|. |+ ....++|+++.+.|+|++|.+.|+........|++..+..++..+.+.|+.++|.+++++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8765 77 788899999999999999999998545555589988888999999999999999999987643
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-11 Score=131.79 Aligned_cols=281 Identities=15% Similarity=0.054 Sum_probs=227.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 000951 733 CPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV 811 (1211)
Q Consensus 733 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 811 (1211)
..++.......+-+...+++.+..++.....+. .| ....+-.-+..+.+.|+..+-..+-.++... .|....+|.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 346666677778888999999999999999984 33 3333333344777888888777777777764 4455789999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV 889 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 889 (1211)
++--|.-.|++++|++.|.+.... .|. ...|-..+..|.-.|..++|...|..+.+ +-|. ..-+..++--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHh
Confidence 998888999999999999998763 343 67899999999999999999999999988 5554 35567778888999
Q ss_pred CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----Ccc-c-CHHHHHHHHHHhhhhCCHH
Q 000951 890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLV-P-TIATFTTLIHKFCKEAKFV 963 (1211)
Q Consensus 890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-p-~~~~~~~L~~~~~~~g~~~ 963 (1211)
++.+-|.++|.++... .|.|+.+.+-++.+....+.+.+|...|+.+++. +.+ + ...++++||.+|++.++++
T Consensus 394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999999999977 5788889999999999999999999999999842 111 1 4567899999999999999
Q ss_pred HHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951 964 DALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus 964 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
+|+..|+..... .| +..++..++-+|...|..+.|+..+.+.+ .++|+..+-.++.+.
T Consensus 473 eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 999999876655 77 55588899999999999999999999984 578888555555443
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=7.9e-15 Score=160.70 Aligned_cols=255 Identities=14% Similarity=0.076 Sum_probs=71.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 000951 708 MDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGM 786 (1211)
Q Consensus 708 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 786 (1211)
...+.+.|++++|.+++.+......+| |...|..++......++++.|+..|+++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555566666666664433221122 4444445555555566666666666666553211 22233333333 45566
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchhhHHHHHH
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDTNTQDAIIMGLKRIAAFQESHFVLR 865 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 865 (1211)
+++|.+++.+..+. .+++..+...+..+...++++++.++++++.... .+++...|..++..+.+.|+.++|+..|+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666665555443 2334444555555666666666666666554311 12344455555555556666666666666
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951 866 GMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 866 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p 944 (1211)
++++ ..|+ ......++..+...|+.+++.+.++...+.. +.++..+..++.++...|+.++|+..|+++.+.+|.
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 6655 5554 3445555555555555555555555554332 344444555555555555555555555555554433
Q ss_pred CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 945 TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 945 ~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
|+.....++.++...|+.++|..+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp -HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccc
Confidence 55555555555555555555555543
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.58 E-value=9.6e-09 Score=118.60 Aligned_cols=663 Identities=13% Similarity=0.034 Sum_probs=387.3
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 000951 329 GNFKEAFRLLAMMEEMGLRPN-EVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQL 407 (1211)
Q Consensus 329 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 407 (1211)
.+...|+..|-+..+.. |+ ...|..|...|+...+...|.+.|++..+.+ +.+...+-...+.|+...+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34666776666655532 22 3467778888887778888888888887776 45667777888888888888888777
Q ss_pred HHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 000951 408 FNKMFKDGL-NPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQ 486 (1211)
Q Consensus 408 ~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 486 (1211)
.-..-++.. ..-...|....-.|.+.++...|..-|+...+.. +-|...|..++.+|...|++..|.++|..+....+
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 322222110 0011223333444667778888888888777754 55667788888888888888888888877766544
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHH
Q 000951 487 GSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRI------GVVPNSITFDCMIDGYGTLGDGLKAFSMFDE-------MVK 553 (1211)
Q Consensus 487 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~ 553 (1211)
. +....--...+.+..|.+.+|...+...... +...-..++-.+...+...|-..+|...+++ .+.
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3 2223333444567778888888777766532 1111112333333333333333333333333 222
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHhCCCC
Q 000951 554 LGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNL---W---EAIVLLDEMVQFNLL 627 (1211)
Q Consensus 554 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~~~~ 627 (1211)
.....+...+..+-++| .+|.... +..|+......+..-....+.. + -|.+.+-.-++ ..
T Consensus 707 h~~~~~~~~Wi~asdac----------~~f~q~e--~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDAC----------YIFSQEE--PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhHHH----------HHHHHhc--ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 22222333333333322 2222222 1112222211111111122211 1 12222222222 22
Q ss_pred CCHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951 628 PDRYTYTILLAGLCR--------KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP 699 (1211)
Q Consensus 628 p~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 699 (1211)
.+..+|..|+..|.+ ..+...|+..+++.++.. ..+..+|+.|.-. ...|.+.-|...|-+.... .+.
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~ 848 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPT 848 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-ccc
Confidence 345666666655443 223457888999988853 4556777777655 5557777777777666544 244
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH--HHHC--CCCCCHHHH
Q 000951 700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNT--MKME--GLLPDKLTC 774 (1211)
Q Consensus 700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--g~~p~~~~~ 774 (1211)
...+|..+.-.+.+..+++.|...|.+.+. +.| |...|.-....-...|+.-++..+|.. .... |--|+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 567788888788889999999999999984 577 778888777777788988888888877 2221 233344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc---------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCChhhH
Q 000951 775 HSLILGFCETGMLEVGFKFLKKMIAE---------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQ 844 (1211)
Q Consensus 775 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 844 (1211)
..........|+.++-+...+++... +.+.+...|...+......+.+.+|.++..+++. ...+-+...|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444445667766655554443322 3445577888888888888999999998887642 0011233333
Q ss_pred H----HHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCch-HHHHH
Q 000951 845 D----AIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALG-ISSSD-VAESA 916 (1211)
Q Consensus 845 ~----~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~~~~-~~~~~ 916 (1211)
+ ..+..++..|.++.|...+.. .|-. .-......+..-.++++++++.|++++... .+.+. .....
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWK------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcc------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 3 556667777888766554433 2211 111111122245789999999999997542 22332 34455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHH--HHHH-HHHHh
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSY--NVLI-SGLCA 993 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~-~~~~~ 993 (1211)
++......+..+.|...+-+.+...+ |+..+...|+.++.-..+-..-..+.+...... ......| ..+. ..|..
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ls~-~~~~sll~L~A~~ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~ 1158 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLSK-VQASSLLPLPAVYILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYAL 1158 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHHhCc-cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHH
Confidence 66667778888999988888887754 488888888777765555444444444433321 0111122 2233 37888
Q ss_pred CCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHH
Q 000951 994 NGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAI 1026 (1211)
Q Consensus 994 ~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~ 1026 (1211)
.|+-+-..+..++..- ..|.. ..|.-+...+
T Consensus 1159 ~~r~~~vk~~~qr~~h--~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1159 QGRSVAVKKQIQRAVH--SNPGDPALWSLLSVRY 1190 (1238)
T ss_pred hhhhHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 8888888777777643 45644 8887776543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=7.7e-08 Score=106.20 Aligned_cols=323 Identities=12% Similarity=0.081 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc---
Q 000951 524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS------IFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD--- 594 (1211)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 594 (1211)
++..|..-+..+ .|+..+-+..|.+.++. +.|. ...+..+.+.|-..|+++.|+.+|++..+.+...-
T Consensus 348 nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 455666555543 56666667777776653 2332 23456666777777788888888777776654421
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 000951 595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLP-----------------DRYTYTILLAGLCRKGKVVSALLFFEKVV 657 (1211)
Q Consensus 595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 657 (1211)
..+|.....+-.+..+++.|+++.+.....--.| +...|..+++..-..|-++....+|++++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3466666666667777777777777665421000 11223333444444566666666666666
Q ss_pred HcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHHCCC
Q 000951 658 SKRTFSPNNV-MFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFSR---MGNMMMANDLLSTMRSRKL 732 (1211)
Q Consensus 658 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~ 732 (1211)
+..-..|..+ .|..+ +....-++++.++|+.-+..=-.|+. .+|+.-+.-+.+ .-+++.|+.+|++..+ +.
T Consensus 505 dLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 6553333321 22222 23334456666665554332112332 344443333322 2345666777776665 44
Q ss_pred CCCH-HHHH-HHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--
Q 000951 733 CPSL-ATYN-ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK--LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC-- 806 (1211)
Q Consensus 733 ~p~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 806 (1211)
+|.. .+.. .....=.+.|-...|+.+|+++-.. +++.. ..|+..+.--...=-...-..+|+++++. -|+.
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~ 657 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKA 657 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHH
Confidence 4422 2211 1111222346666666666665542 33322 24444443222222233445566666653 2332
Q ss_pred -hhHHHHHHHHHhcCcHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhcc
Q 000951 807 -FTFNVLMRKCCEAGEMGKAFDLFNIMNML-GVVPDTNTQDAIIMGLKRIAA 856 (1211)
Q Consensus 807 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 856 (1211)
...-...++-++.|.++.|..+|.-..+. ++..+..-|.+--.-=.++|+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 12223344555666677776666655442 112223344443333344444
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.57 E-value=1.6e-08 Score=116.81 Aligned_cols=431 Identities=11% Similarity=-0.042 Sum_probs=244.7
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 000951 576 LKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEK 655 (1211)
Q Consensus 576 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 655 (1211)
...|...|-+..+..+. -...|..|+..|+...+...|.++|++..+.+ ..|...+......|+...++++|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555555554433 34577788888887778888888888887764 33666678888888888888888887544
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 000951 656 VVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP- 734 (1211)
Q Consensus 656 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p- 734 (1211)
.-+..+...-...|....-.|.+.++...|+..|+...... +.|...|..++.+|.++|++..|.++|.++.. ++|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 44332111123445556666777888888888888887653 44667788888888888888888888888774 455
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------C
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEG------LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAE-------G 801 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 801 (1211)
+...-.......+..|++.+|+..+...+..- ..--..++..+...+...|=..+|..++++.++. .
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33333334445566788888888887766521 0001112222333344445555555555554432 1
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChh--hHH-HHHHHHHhhcch--h----hHHHHHHHHHHcCC
Q 000951 802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTN--TQD-AIIMGLKRIAAF--Q----ESHFVLRGMAEKGL 872 (1211)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~-~l~~~~~~~g~~--~----eA~~~~~~~~~~g~ 872 (1211)
...+...|..+.++ ...|-.. .|+.+ .+. .+..-....+.. + -|.+.+-.-++ +
T Consensus 709 ~~~~~~~Wi~asda----------c~~f~q~-----e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l 771 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDA----------CYIFSQE-----EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--L 771 (1238)
T ss_pred hhhhHHHHHHHhHH----------HHHHHHh-----cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--H
Confidence 11122223222221 1111111 12211 011 111101111111 1 11222222222 1
Q ss_pred CCChhHHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951 873 TPKCTQYITLINGMCR--------VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 873 ~p~~~~~~~l~~~~~~--------~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p 944 (1211)
..+..+|..|+.-|.+ ..+...|+..++++++. ...+...|+.|+.+ ...|++.-|...|-+.....|.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~- 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT- 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-
Confidence 1223344455444433 22334677777777765 25566677777766 5667788888887777776655
Q ss_pred CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH--HH--cCCccChhhH
Q 000951 945 TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM--KH--KGLCPNSTTY 1019 (1211)
Q Consensus 945 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~--~~--~g~~p~~~~~ 1019 (1211)
+..+|.+++..+.+..|++-|...|...+.+ .|++. .|-..+.+..+.|+.-++..++..- .. .|--|+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 7778888888888888888888888766655 77544 6666555666677766666666541 11 3444455555
Q ss_pred HHHHHHHHhcccch
Q 000951 1020 SVLIDAISKKENNL 1033 (1211)
Q Consensus 1020 ~~l~~~~~~~~~~~ 1033 (1211)
.+....-..+|+.+
T Consensus 927 ~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIE 940 (1238)
T ss_pred HHHHHHHHhccchH
Confidence 55544444444433
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=8.7e-08 Score=105.81 Aligned_cols=571 Identities=12% Similarity=0.101 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 000951 141 YTCNMMLSFMLKDRRVDSVWLLFDDMLD-RKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNW 219 (1211)
Q Consensus 141 ~~~~~ll~~l~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 219 (1211)
..|-..+..+.+.+++......|+..+. ..+.-....|..++...-..|-++-+..++++..+. ++..-+..|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 5677788888888888888888887654 223344557888888888888888889999888865 33446777888
Q ss_pred HHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCC--HHHHHHHHH
Q 000951 220 YCKKGRYKAAFKLIDCMASK------GIEADVCTYNMFIDDLCRNNRSAK---GYLLLKNMRKRMITPN--EVTYNTLIN 288 (1211)
Q Consensus 220 ~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~--~~~~~~li~ 288 (1211)
+++.+++++|.+.+...... ..+.+-..|..+-+...++.+.-. ...+++.+... -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 89999999999988877543 234455667777777766655433 33344444433 234 457899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCcCHhHHHHHHHHHHhcCCh
Q 000951 289 GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME--EMGLRPNEVSYGALLNGFCKHAKF 366 (1211)
Q Consensus 289 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~g~~ 366 (1211)
-|.+.|.++.|..+|++.... ...+.-|+.+-++|..-..-.-+..+= +. +.|-+-+...+...+..+-..-+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999988764 344555677777776533222221111 11 111112222222222222110000
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCHHHHH
Q 000951 367 DLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPD------LITFSVLINGFCKVGMTRKAK 440 (1211)
Q Consensus 367 ~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~ 440 (1211)
---++..+.-...+.++..|..-+..+ .|+..+-...|.+..+. +.|. ...|..+...|-..|+.+.|.
T Consensus 333 --r~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 333 --RPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred --cchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 000111111111244556666555543 46677777777777654 2332 245777788888888888888
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 000951 441 AVLCKMYRDGLVPN---KIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMK 517 (1211)
Q Consensus 441 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 517 (1211)
.+|.+...-..+-- ..+|......-.+..+++.|+++.+.+......|. ..+...+..-++. +
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~--------~~~yd~~~pvQ~r-----l- 473 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE--------LEYYDNSEPVQAR-----L- 473 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh--------hhhhcCCCcHHHH-----H-
Confidence 88888776532211 22344444444556677777777666544322111 1233333322211 1
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc-HH
Q 000951 518 RIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD-TV 596 (1211)
Q Consensus 518 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 596 (1211)
..+...|...++.--..|-++.-..+|+++++..+. ++.........+-...-++++.+.+++-+..-..|+ ..
T Consensus 474 ----hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 474 ----HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred ----HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 123456777777666778888888899999887643 333333344445566778888888888776655444 45
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCC--HHHH
Q 000951 597 AYNTILAETCK---SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAG--LCRKGKVVSALLFFEKVVSKRTFSPN--NVMF 669 (1211)
Q Consensus 597 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~ 669 (1211)
+|+..+.-+.+ ...++.|..+|++.++ |++|...-+.-|+.+ --..|....|+++|+++... +.+. ...|
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~my 625 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 77776666654 3478899999999998 677655443333322 22468888899999997664 3433 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 000951 670 TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIA---FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP--SLATYNILLH 744 (1211)
Q Consensus 670 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~ 744 (1211)
+..|.--...=-+.....+|+++++. -|+..+ .....+.=++.|..+.|+.++.-..+- .+| +...|.+.-.
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHH
Confidence 66664333332344455677777665 344332 223345556788888888888776542 344 5667777766
Q ss_pred HHHccCC
Q 000951 745 GYSKKKD 751 (1211)
Q Consensus 745 ~~~~~g~ 751 (1211)
-=.+.||
T Consensus 703 FEvrHGn 709 (835)
T KOG2047|consen 703 FEVRHGN 709 (835)
T ss_pred HHHhcCC
Confidence 6677777
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3e-14 Score=156.13 Aligned_cols=261 Identities=15% Similarity=0.108 Sum_probs=111.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 000951 741 ILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL-TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA 819 (1211)
Q Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 819 (1211)
.+...+.+.|++++|++++++.......|+.. .|..+.......+++++|++.|++++..+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56788889999999999997665543245444 4445566777789999999999999886432 45567777776 688
Q ss_pred CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChhhHHHH
Q 000951 820 GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TPKCTQYITLINGMCRVGNFQGAFKL 898 (1211)
Q Consensus 820 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~eA~~~ 898 (1211)
+++++|.+++.+.-+. .+++..+..++..+.+.++++++..+++++....- .++...|..++..+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998877553 35666777888889999999999999999876332 23557788899999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCC
Q 000951 899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVK 978 (1211)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 978 (1211)
|+++++.. |.+..+...++..+...|+.+++.++++...+..+. |+..|..++.+|...|++++|+..|+..... .
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhccccccccccccccccccc--c
Confidence 99999873 556888889999999999999988888887776533 7778899999999999999999998877665 7
Q ss_pred Cc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 979 LD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 979 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
|+ +.....++.++...|+.++|.+++++..+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 74 45678888999999999999999887643
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=8.1e-12 Score=144.07 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=69.9
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch--HHH
Q 000951 840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQ---YITLINGMCRVGNFQGAFKLKDEMEALGISSSD--VAE 914 (1211)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~--~~~ 914 (1211)
++..+..++..+...|++++|...+++.++ ..|+... ...........++.+.+.+.+++..+. .+.++ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHH
Confidence 445555555555555666666666666555 4444321 011111222345556666666666544 23344 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 915 SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 915 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
.+++.++.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.++|+.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666666666666666666322222235555556666666667776666666654
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=2e-11 Score=139.90 Aligned_cols=250 Identities=9% Similarity=-0.028 Sum_probs=125.4
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951 747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCH--SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK 824 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 824 (1211)
.+.|+++.|...+.++.+ ..|+..... .....+...|++++|...++++.+.. +.++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 445555555555555544 233332111 12344445555555555555554432 2224444445555555555555
Q ss_pred HHHHHHHHHHCCCCCChh-------hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHH
Q 000951 825 AFDLFNIMNMLGVVPDTN-------TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAF 896 (1211)
Q Consensus 825 A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~ 896 (1211)
|.+++..+.+....++.. +|..+..........+....+++...+ ..| +......++.++...|+.++|.
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555554433221111 111111111111112222222222221 112 3455566666666666666666
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951 897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG 976 (1211)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 976 (1211)
+.+++..+. ++++..... ......++.+++++.+++.++..|. |+..+..+|..+...|+|++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l~~l--~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLVLL--IPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHHHH--HhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 666666653 334322211 1222346667777777766666554 6666667777777777777777776655544
Q ss_pred CCCchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 977 VKLDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 977 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
.|+...+..++.++.+.|+.++|.+++++-.
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666667777777777777666543
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=2.6e-11 Score=139.02 Aligned_cols=250 Identities=11% Similarity=-0.038 Sum_probs=113.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChH
Q 000951 677 FKAGQSKAAMHISKIMDKEGVYPDTIAFN--AVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLL 753 (1211)
Q Consensus 677 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 753 (1211)
...|+++.|.+.+.++.+. .|+..... .....+...|++++|...++++.+. .| ++.....+...|.+.|+|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555555443 33322211 2234455555555555555555533 33 4555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951 754 MCSMLLNTMKMEGLLPDKL-------TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF 826 (1211)
Q Consensus 754 ~A~~~~~~~~~~g~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 826 (1211)
+|.+++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....++..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555543322110 1111121112222233333333332221 2234444555555555555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 827 DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
+.+++..+. .++... .+..+....++.++++...++.++ ..|+. ..+..++..+.+.|+|++|.+.|+++.+.
T Consensus 284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555442 222211 111122233555555555555554 44433 34445555555555555555555555543
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.|+...+..++.++.+.|+.++|.++|++.+.
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444555555555555555555555443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3.7e-11 Score=121.27 Aligned_cols=288 Identities=15% Similarity=0.119 Sum_probs=209.6
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCC
Q 000951 714 MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK------LTCHSLILGFCETGM 786 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~ 786 (1211)
..+.++|.++|-+|.+. .| +..+..+|++.|...|..+.|+.+.+.+.+. ||. .+...|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 46677777777777753 34 5666777788888888888888887777754 332 244556777888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhcchhhHHH
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD----TNTQDAIIMGLKRIAAFQESHF 862 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~ 862 (1211)
+|.|+++|..+...+ .--......|+.+|-+..+|++|++.-.++.+.+..+. .--|.-++..+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 888888888887632 11244667788888888888888888888877554443 2245667777778889999999
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 863 VLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 863 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
++.++++ .+|+. .+-..+++.....|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++.+.++.++.+..
T Consensus 202 ~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999998 77865 66778899999999999999999999988666667788899999999999999999999999876
Q ss_pred cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH---HhCCChhHHHHHHHHHHHcCCc
Q 000951 942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGL---CANGDVMPAFELYEEMKHKGLC 1013 (1211)
Q Consensus 942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~g~~ 1013 (1211)
..++ .-..|...-....-.+.|.......... .|+...++.++... +..|.|.+..-+.+.|....++
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 5444 3344554444444455555543332333 78888777777733 2446788888888887653333
No 64
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.50 E-value=3.2e-08 Score=109.73 Aligned_cols=475 Identities=15% Similarity=0.091 Sum_probs=256.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHH
Q 000951 295 KIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLE 374 (1211)
Q Consensus 295 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 374 (1211)
++.+|..+|-+-. + -..-|..|....++++|+.+-+. .|.+.-...-.+.++++...|+-+.|-++-
T Consensus 546 kfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk- 612 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK- 612 (1636)
T ss_pred hhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc-
Confidence 5666666664321 1 12334555556667776665432 232222233345556666666666655431
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000951 375 RMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPN 454 (1211)
Q Consensus 375 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 454 (1211)
.+...-.+-|..|.+.|....|.+....=.. +..|......+..++.+..-+++|-.+|+++.. |+
T Consensus 613 --------~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~d 678 (1636)
T KOG3616|consen 613 --------ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD 678 (1636)
T ss_pred --------cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH
Confidence 1111123456778888887777655421111 123555566666667777777777777766542 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 000951 455 KIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT-CNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMID 533 (1211)
Q Consensus 455 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~ 533 (1211)
..+.+|-+-.-+-+|.++-+.. ++..++. -......+...|+++.|+..|-+... ....|.
T Consensus 679 -----kale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaie 740 (1636)
T KOG3616|consen 679 -----KALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIE 740 (1636)
T ss_pred -----HHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHH
Confidence 1233333333344555543332 1112222 12334455666777777766644331 123345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHH
Q 000951 534 GYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWE 613 (1211)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 613 (1211)
+-.....+.+|+.+++.+.... .-..-|..+.+-|+..|+++.|+++|.+. ..++.-|.+|.+.|+|++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 5566778888888888877643 22334556677788888888888888653 245566788888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 614 AIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMD 693 (1211)
Q Consensus 614 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 693 (1211)
|.++-.+.. |.......|.+-..-+-.+|++.+|.++|-.+- .|+. -|.+|-+.|..++.+++...-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHh-
Confidence 888776654 333344456555556677888888887775432 3443 346677777777777665543
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 000951 694 KEGVYPD--TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK 771 (1211)
Q Consensus 694 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 771 (1211)
.|+ ..+...+..-|-..|++..|+.-|-+..+ |.+-++.|...+-|++|.++-+. .|-. +.
T Consensus 877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg~-n~ 939 (1636)
T KOG3616|consen 877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGGA-NA 939 (1636)
T ss_pred ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cccc-cH
Confidence 222 23444555566667777777776665542 34445566666666666554321 1211 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 000951 772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL 851 (1211)
Q Consensus 772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 851 (1211)
.-. .+...+++=--+.|.+++++. | ....-++.-+..+.++-|.++-+-..+ .........++.-+
T Consensus 940 ~k~--v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k---~k~~~vhlk~a~~l 1005 (1636)
T KOG3616|consen 940 EKH--VAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAK---DKMGEVHLKLAMFL 1005 (1636)
T ss_pred HHH--HHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhh---ccCccchhHHhhhh
Confidence 111 111112221223444444331 1 112223334455556666665554433 11233344455556
Q ss_pred HhhcchhhHHHHHHHHHH
Q 000951 852 KRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~ 869 (1211)
...|++++|-..|-++++
T Consensus 1006 edegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 1006 EDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhccchhhhhHhhHHHhh
Confidence 667777777777777766
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.3e-10 Score=117.39 Aligned_cols=289 Identities=11% Similarity=0.044 Sum_probs=201.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHH
Q 000951 643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD---TIAFNAVMDGFSRMGNMMM 719 (1211)
Q Consensus 643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 719 (1211)
.++.++|..+|-++.+.. +....+..+|.+.|.+.|..+.|+++++.+.+..--+. ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 577888999998888853 34466778888999999999999999998876421111 1334556777888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHH
Q 000951 720 ANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL----TCHSLILGFCETGMLEVGFKFLK 795 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~ 795 (1211)
|+.+|..+.+.+ ..-......|+..|....+|++|++.-.++...+-.+..+ .|.-+...+....+.+.|+..++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988631 2245667788889999999999999999888866555332 34556667777788889999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC
Q 000951 796 KMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK 875 (1211)
Q Consensus 796 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~ 875 (1211)
++++.+. ..+.+-..+++.+...|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++.+..+..+.+ ..+.
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g 281 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTG 281 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCC
Confidence 9888532 234455667788889999999999999888754322256677788888888888888888888887 4444
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH---CGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~ 939 (1211)
...-..+........-.+.|..+..+-+.. .|+...++.+++.... .|...+.+..++.|+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444444444444444455555555555443 5666666666654432 2445555665555553
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=3.1e-09 Score=117.59 Aligned_cols=463 Identities=12% Similarity=0.033 Sum_probs=292.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHH
Q 000951 528 FDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK 607 (1211)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 607 (1211)
|..++..| ..+++.+.++..+.+++. .+--..|.....-.++..|+.++|........+..+. +.+.|..++-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344433 568888888888888873 2333445554555567789999999988888776554 67888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000951 608 SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMH 687 (1211)
Q Consensus 608 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 687 (1211)
..++++|+++|...+..+ +.|...|.-+.-.-.+.++++.....-.+.++.. +.....|..+..++.-.|++..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998854 3356667766666677888888888888887742 3346778888888889999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 000951 688 ISKIMDKEG-VYPDTIAFNAVM------DGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLN 760 (1211)
Q Consensus 688 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (1211)
+.+...+.. ..|+...+.... ....+.|..++|.+.+...... +......--+-...+.+.+++++|..+|.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 998886554 246665553332 2344578888888777765432 11123333455677889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH-HHHHHHHHCCC
Q 000951 761 TMKMEGLLPDKLTCHSLILGFC-ETGMLEVGF-KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF-DLFNIMNMLGV 837 (1211)
Q Consensus 761 ~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 837 (1211)
.++. ..||...|+..+..+. +-.+--+++ .+|...-+. .|....-..+.-....-.++.+.. +++...++.|+
T Consensus 244 ~Ll~--rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLE--RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHh--hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9998 5688888876664333 333444444 555555442 222111111111111112333333 33444555554
Q ss_pred CCChhhHHHHHHHHHhhcchh---hHHHHHHHHHH-cC---------C-CCCh--hHHHHHHHHHHhcCChhhHHHHHHH
Q 000951 838 VPDTNTQDAIIMGLKRIAAFQ---ESHFVLRGMAE-KG---------L-TPKC--TQYITLINGMCRVGNFQGAFKLKDE 901 (1211)
Q Consensus 838 ~~~~~~~~~l~~~~~~~g~~~---eA~~~~~~~~~-~g---------~-~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~ 901 (1211)
++ .+..+...|..-.+.+ +-+.-|...+. .| . .|.. .++..++..+-+.|+++.|..+.+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 43 3344444443322222 11111111111 11 1 2332 5666778888888999999999998
Q ss_pred HHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC--
Q 000951 902 MEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-- 979 (1211)
Q Consensus 902 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-- 979 (1211)
++.+ .|.-.+.|..-+.++...|.+++|..+++.+.+++-. |...-..-+.-..+.++.++|.++.......|..-
T Consensus 397 AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 397 AIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred Hhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 8865 2333445666678888889999999999888887643 54443345555567788888888765554443211
Q ss_pred ---ch-HHHHHHHH--HHHhCCChhHHHHHHHH
Q 000951 980 ---DV-VSYNVLIS--GLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 980 ---~~-~~~~~l~~--~~~~~g~~~~a~~~~~~ 1006 (1211)
+. ..|+.+-+ +|.+.|+|-.|.+-+..
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 11 24555544 78888888777755443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=7e-09 Score=105.79 Aligned_cols=454 Identities=13% Similarity=0.119 Sum_probs=290.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 000951 254 DLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKE 333 (1211)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 333 (1211)
-+....++..|+.+++.-...+-+-...+--.+..++...|++++|...+.-+.... .|+...+-.|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344566777777777766544433333444456677889999999999998877654 5677778888888888899999
Q ss_pred HHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951 334 AFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFK 413 (1211)
Q Consensus 334 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 413 (1211)
|..+-... +.+.-.-..+...--+.++-++...+++.+... ..-..+|.....-.-.+++|+++|.+.+.
T Consensus 110 A~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98776543 334445556666667788888777777666543 23344555555556678999999999987
Q ss_pred CCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 000951 414 DGLNPDLITFSVLI-NGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFT 492 (1211)
Q Consensus 414 ~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 492 (1211)
. .|+-...|.-+ -+|.+..-++-+.+++.--+++ ++.++.+.+....-..+.=+-..|.+-.+.+.+.+...
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 6 46666666544 4577888888888888877765 34455555555544444333333444444444432211
Q ss_pred HHHHHHHHHcC-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000951 493 CNMLVASLCKG-----GKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLL 567 (1211)
Q Consensus 493 ~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 567 (1211)
-..+.-+++. ..-+.|++++-.+.+. -| .+-..|+--|.+.++..+|..+.+++.- ..|-......+.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 1122233333 2346777777666642 22 3444566678899999999998887632 234333333333
Q ss_pred HHH-----HcCCCHHHHHHHHHHhhhCCCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951 568 KGL-----CKGGNLKEAKRFLNSLHHIPSAVDT-VAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC 641 (1211)
Q Consensus 568 ~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 641 (1211)
.+- .....+.-|.+.|...-..+..-|. .-..++...+.-..++++.+..+..+... +..|...-..+..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence 321 1222456677777776655554442 23456666777777888888888887764 3334444445788899
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHH
Q 000951 642 RKGKVVSALLFFEKVVSKRTFSPNNVMFT-CLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIA-FNAVMDGFSRMGNMMM 719 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~ 719 (1211)
..|++.+|.++|-++.... ..|..+|. .|.++|.+.++++.|..++-.+ ..+.+..+ ...+..-|.+++.+--
T Consensus 405 atgny~eaEelf~~is~~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPE--IKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HhcChHHHHHHHhhhcChh--hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997764432 23455554 4557888999999997766544 32333333 3444567888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHH
Q 000951 720 ANDLLSTMRSRKLCPSLATYN 740 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p~~~~~~ 740 (1211)
|.+.|+.+.. ..|++..|.
T Consensus 480 aaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHhhhHHHc--cCCCccccC
Confidence 8888888874 466666664
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-08 Score=104.61 Aligned_cols=462 Identities=13% Similarity=0.079 Sum_probs=235.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHH
Q 000951 533 DGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLW 612 (1211)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 612 (1211)
..+.+.|++++|+..|.-+.+.. .++......|.-++.-.|.+.+|..+.....+ ++-.-..|...-.+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHH
Confidence 34445566666666655555432 33333333444444445555555555444322 1112222233333444443
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 000951 613 EAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV-DGLFKAGQSKAAMHISKI 691 (1211)
Q Consensus 613 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~ 691 (1211)
+-....+.+.. ...--.+|.+.....-.+++|+++|++++.. .|+....+..+ -+|.+..-++-+.+++..
T Consensus 139 ~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 139 RILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 33333333321 1112223444444444566677777766653 34443333322 344555555666666555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 000951 692 MDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK 771 (1211)
Q Consensus 692 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 771 (1211)
-+.. ++.+....|....-..+.=+-..|+.-...+.+.+-..-+..-..+-.-+.--.+-+.|++++-.+.+ +-|..
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA 287 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA 287 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh
Confidence 5443 12223333333333333211122232333333211000011111111111223445667766655554 22322
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-----hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh-hhHH
Q 000951 772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCF-----TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT-NTQD 845 (1211)
Q Consensus 772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 845 (1211)
-..|+.-|.++++..+|..+.+.... ..|-.. ++..+++-......+.-|.+.|+-.-+.+..-|+ ..-.
T Consensus 288 --RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 --RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred --hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 22355566788888888877766421 112111 2222222222233455667777666554444443 3455
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
++++.+.-..++++.+.+++.....-.+ |..--..++.+++..|++.+|.++|-++....++.+......++..|.+.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 6777777778888888888887663332 333445688889999999999999888864433334444456778899999
Q ss_pred CHHHHHHHHHHHHhCCcccCH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHH
Q 000951 926 KVEEAMLVLNRMLRMRLVPTI-ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~p~~-~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
+.+-|.++ ++..+-+.+. .....+++-|.+.|.+=-|-+.|..+..+ +|++..|.. +...+.-++
T Consensus 443 kP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG---------KRGACaG~f 508 (557)
T KOG3785|consen 443 KPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG---------KRGACAGLF 508 (557)
T ss_pred CchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC---------ccchHHHHH
Confidence 99999888 4444433233 34455667888889888888888877766 777666632 222333445
Q ss_pred HHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951 1005 EEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus 1005 ~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
..+....-+|-| ....+++..+...+
T Consensus 509 ~~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 509 RQLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred HHHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 555444445555 55555555544433
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.5e-09 Score=110.44 Aligned_cols=401 Identities=14% Similarity=0.061 Sum_probs=267.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 000951 594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRK-GKVVSALLFFEKVVSKRTFSPNNVMFTCL 672 (1211)
Q Consensus 594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 672 (1211)
+...-...+.+|-..++-+.|+..+.+.....- ..-.+.|+.-+.+. ++-.++.--+...+... |- . ...
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p~--a-L~~ 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQHHGSRHKEAVLAYKEVIREC---PM--A-LQV 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHhccccccHHHHhhhHHHHhc---ch--H-HHH
Confidence 444555567777788888888877665443211 11123333333332 33334444455544432 11 0 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 000951 673 VDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR--MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKK 749 (1211)
Q Consensus 673 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 749 (1211)
+.+..+.+ ...+...-..|......|...+....+.++.. .++...|...+-.+.....-| |+.....++..+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111111 01111111223233334444444444544443 566666666666665443344 788889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951 750 KDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL 828 (1211)
Q Consensus 750 g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 828 (1211)
|+.++|+..|.+.+. +.|+.++ .-.....+...|+++.-..+...+.... ......|.--+.......+++.|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 999999999999987 6676543 2222344567788888888877776531 12222333333445567789999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 000951 829 FNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGI 907 (1211)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 907 (1211)
-++.++.+ +.+...+-.-+..+.+.|+.++|...|+.+.. +.| +...|..|+..|...|++.||...-+...+. +
T Consensus 323 ~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 323 VEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred HHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 99888643 23455666667888999999999999999998 888 4699999999999999999999998888754 4
Q ss_pred CCchHHHHHHH-HHHHhcCC-HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951 908 SSSDVAESAMV-RGLAHCGK-VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN 985 (1211)
Q Consensus 908 ~~~~~~~~~l~-~~~~~~g~-~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 985 (1211)
+.+..++..++ .++.-... .++|.+++++.+..+|. -..+.+.++..+...|++++++.+++..... -||..-.+
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~ 475 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHN 475 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHH
Confidence 66667776664 44444333 78899999999997754 5667788999999999999999998765544 78988999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 986 VLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 986 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
.|+..+.+.+.+.+|...|...+. +.|+.
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 999999999999999999998854 56666
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=6e-09 Score=115.39 Aligned_cols=470 Identities=14% Similarity=0.099 Sum_probs=243.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 000951 467 KMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFS 546 (1211)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (1211)
..+++...++..+.+++..+. ...+.....-.++..|+-++|......-....+ .+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 455666666666666553222 333333344445556666666666555554332 245667777766666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 000951 547 MFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFN- 625 (1211)
Q Consensus 547 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 625 (1211)
.|...+..+ +.|...+.-+.-.-...++++........+.+..+. ....|..++..+.-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777776643 334444544444444555555555555555544333 44556666666666677777777776666532
Q ss_pred CCCCHHHHHHHHH------HHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951 626 LLPDRYTYTILLA------GLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP 699 (1211)
Q Consensus 626 ~~p~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 699 (1211)
-.|+...+..... .....|..++|++.+.+-... +......-..-.+.+.+.+++++|..++..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 1344444333222 233455555555554443221 1111112233334455556666666666555544 34
Q ss_pred CHHHHHHHH-HHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 000951 700 DTIAFNAVM-DGFSRMGNMMMAN-DLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSL 777 (1211)
Q Consensus 700 ~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 777 (1211)
|...|.-.. .++.+--+.-++. .+|....+. ++-....-..=++......-.+..-.++..+++.|+.+--.. +
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l 326 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---L 326 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---h
Confidence 444333322 2222222222222 333333321 100000000000001111112222233444444444331111 1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhc
Q 000951 778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIA 855 (1211)
Q Consensus 778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 855 (1211)
.+.|-... +.- +.++... .|...+... ...+....-+ . -+|. .+++..++..|...|
T Consensus 327 ~SLyk~p~---k~~-~le~Lvt--------~y~~~L~~~-~~f~~~D~~~-----~---E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 327 RSLYKDPE---KVA-FLEKLVT--------SYQHSLSGT-GMFNFLDDGK-----Q---EPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHhchh---HhH-HHHHHHH--------HHHhhcccc-cCCCcccccc-----c---CCchHHHHHHHHHHHHHHHcc
Confidence 11121111 000 2222111 010000000 0000000000 0 1344 345566778888999
Q ss_pred chhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 000951 856 AFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVL 934 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 934 (1211)
+++.|..+.+.+++ -.|.. +-|..-+..+.++|++++|...++++.+.+ .+|..+...-+.-..++.+.++|.++.
T Consensus 386 ~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 386 DYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred cHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999999988 77875 788899999999999999999999998875 566666667777788999999999999
Q ss_pred HHHHhCCccc--C----HHHHHHH--HHHhhhhCCHHHHHHHHHHH
Q 000951 935 NRMLRMRLVP--T----IATFTTL--IHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 935 ~~~~~~~~~p--~----~~~~~~L--~~~~~~~g~~~~A~~~~~~~ 972 (1211)
.+..+.+... | .-+|..+ |.+|.++|++.+|++=|..+
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8888766421 1 1345444 45688889998888755543
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.7e-10 Score=120.16 Aligned_cols=389 Identities=14% Similarity=0.097 Sum_probs=202.9
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCC
Q 000951 567 LKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRY-TYTILLAGLCRKGK 645 (1211)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~ 645 (1211)
.++.+..|+++.|...|...+...+. +.+.|+--..+|.+.|++++|++--.+-++ +.|+.. .|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhccc
Confidence 34567789999999999999988877 888898889999999999999887777776 457754 58888888899999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhCC---CCCCHHHHHHHHHHHHh------
Q 000951 646 VVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAA---MHISKIMDKEG---VYPDTIAFNAVMDGFSR------ 713 (1211)
Q Consensus 646 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~g---~~~~~~~~~~li~~~~~------ 713 (1211)
+++|+..|.+-++.. +.|...++.+.+++.......+. -.++..+.... .......|..++..+-+
T Consensus 86 ~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999998853 44567778888777211000000 00111110000 00000112222211111
Q ss_pred ----cCChHHHHHHHHHHH-----HC-------CCCC------------C----------HHHHHHHHHHHHccCChHHH
Q 000951 714 ----MGNMMMANDLLSTMR-----SR-------KLCP------------S----------LATYNILLHGYSKKKDLLMC 755 (1211)
Q Consensus 714 ----~g~~~~A~~~~~~~~-----~~-------~~~p------------~----------~~~~~~l~~~~~~~g~~~~A 755 (1211)
-.++..|...+.... .. ...| | ..-...++++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000111111111000 00 0000 0 01133445555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 756 SMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD------CFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 756 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
++.|...++ +..+..-++...-+|...|.+.+.+.......+.|...- ......++.+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALE--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHh--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 666666655 222222233334555555665555555555544432210 001111233455555566666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 000951 830 NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGIS 908 (1211)
Q Consensus 830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 908 (1211)
++.+..-..|+. ..+....++++.......- +.|+. .-...-++.+.+.|+|.+|++.|.+++... |
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 555432222211 1122333444444333333 44432 223333555556666666666666665543 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.|...|...+.+|.+.|.+.+|+.-.+..++.+|+ ....|..-+.++....+|+.|.+.|....+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556666666666666666666666665543 5555555566666666666666665544433
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=5.4e-11 Score=142.63 Aligned_cols=246 Identities=16% Similarity=0.086 Sum_probs=145.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 000951 751 DLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFC---------ETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG 820 (1211)
Q Consensus 751 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 820 (1211)
++++|+..|+++++ ..|+. ..|..+..+|. ..+++++|...++++++.+ +.+..++..++.++...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 35667777777766 45543 33444433332 2234677777777777642 224556666777777777
Q ss_pred cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHH
Q 000951 821 EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLK 899 (1211)
Q Consensus 821 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 899 (1211)
++++|+..|+++++.+ +.+...|..++..|...|++++|+..++++++ ++|+. ..+..++.++...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 7777777777777643 22355667777777777777777777777777 66653 23334444555667777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc-CCC
Q 000951 900 DEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS-GVK 978 (1211)
Q Consensus 900 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~-~~~ 978 (1211)
+++.+...+.++..+..++.++...|++++|...++++....+. +...++.++..|...|+ +|...++.+.+. ...
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh
Confidence 77765432334555666777777777777777777776554433 45556666666666663 555544433321 112
Q ss_pred CchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 979 LDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 979 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
|....+ ....|+-.|+-+.+..+ +++.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 222222 44455556666666555 4443
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.2e-09 Score=114.54 Aligned_cols=281 Identities=13% Similarity=0.113 Sum_probs=143.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 000951 679 AGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSML 758 (1211)
Q Consensus 679 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 758 (1211)
.|+|.+|++......+.+-.| ...|..-+.+--+.|+.+.+..++.++.+..-.++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777776666655554222 2333444455556777777777777776542234555566666677777777777777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCcHHHHHHHHH
Q 000951 759 LNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC-------FTFNVLMRKCCEAGEMGKAFDLFN 830 (1211)
Q Consensus 759 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~ 830 (1211)
..++.+. .| ..........+|.+.|+|.....+..++.+.+.-.|+ .+++.+++=....+..+.-...|+
T Consensus 176 v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7777763 34 3344555567777777777777777777776554442 233333332222222222233444
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 000951 831 IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS 910 (1211)
Q Consensus 831 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 910 (1211)
.... ..+.++..-.+++.-+.+.|..++|.++..+.++.+.+|....+ -.+.+.++.+.-++..++..+. .+.+
T Consensus 254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 3322 12233444444555555555555555555555554444441111 1223344444444444444322 1233
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
+..+..+|..|.+.+.|.+|.+.|+.++... |+...|..++.++.+.|+.++|.++++
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 3444444444444444444444444444432 344444444444444444444444444
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=7.2e-11 Score=141.56 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=167.9
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHh---------cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951 785 GMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCE---------AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI 854 (1211)
Q Consensus 785 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 854 (1211)
+.+++|+..++++++. .|+ ...+..++.+|.. .+++++|.+.++++++.+ +.+...|..++.++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4568999999999984 454 4566666665543 245889999999999854 33578889999999999
Q ss_pred cchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951 855 AAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 855 g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
|++++|+..|+++++ .+|+. ..+..++.++...|++++|+..++++++.+ |.+...+..++.++...|++++|+..
T Consensus 352 g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999999 88874 778889999999999999999999999874 33333444555567778999999999
Q ss_pred HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
++++++..++.++..+..++.++...|++++|...++.+... .|+.. ..+.++..|...| +.|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 999987653326777888999999999999999998776544 66544 5566777777777 577777776654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.6e-10 Score=130.68 Aligned_cols=236 Identities=19% Similarity=0.161 Sum_probs=160.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCHh-hHHHHHHHHHhcCcHHHHHHHHHHHHH-----CCCC-C
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAE-----GT-MVDCF-TFNVLMRKCCEAGEMGKAFDLFNIMNM-----LGVV-P 839 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~ 839 (1211)
+...+...|...|++++|...++.+++. |. .|... ..+.++..|...+++.+|+.+|++++. .|-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666777777777777777776653 10 12222 233466677777888888777777753 1111 1
Q ss_pred -ChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCC-h-hHHHHHHHHHHhcCChhhHHHHHHHHHHc---CCC
Q 000951 840 -DTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPK-C-TQYITLINGMCRVGNFQGAFKLKDEMEAL---GIS 908 (1211)
Q Consensus 840 -~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~-~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---~~~ 908 (1211)
-..+++.|+.+|.+.|+++||..+++.+++ .|..+. . ..+..++..++..+++++|..+++++.+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 145677777788888888888887777664 223332 2 55777888888999999999998888542 111
Q ss_pred C----chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----c--cc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH----H
Q 000951 909 S----SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR----L--VP-TIATFTTLIHKFCKEAKFVDALKLKGTM----E 973 (1211)
Q Consensus 909 ~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~--~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~----~ 973 (1211)
+ -..++..|+..|...|++++|.++|+++++.. . .+ ....++.|+..|.+.+++++|.++|... +
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 23467889999999999999999999988742 1 11 3456788888998889998888887643 3
Q ss_pred hcCCC-CchH-HHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 974 LSGVK-LDVV-SYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 974 ~~~~~-p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
..|.. |+.. +|.+|+..|.+.|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44322 3433 77889999999999999999887653
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3e-08 Score=103.64 Aligned_cols=298 Identities=10% Similarity=-0.041 Sum_probs=209.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChH
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFN-AVMDGFSRMGNMM 718 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~ 718 (1211)
.+-.++-..|...+-.+.....++-|......+.+.+...|+.++|+..|++..-. .|+...-. .-.-.+.+.|+++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence 34456666666666555555545666777888889999999999999999888643 34332211 1122345678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 719 MANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKM 797 (1211)
Q Consensus 719 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 797 (1211)
.-..+...+.... .-....|..-+......++++.|+.+-.+.++ ..|+. ..+..-+.++...++.++|.-.|+.+
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 8887777776431 12344455555566677889999988888887 45533 45544557788889999999999988
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHh-hcchhhHHHHHHHHHHcCCCCC
Q 000951 798 IAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAII-MGLKR-IAAFQESHFVLRGMAEKGLTPK 875 (1211)
Q Consensus 798 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~eA~~~~~~~~~~g~~p~ 875 (1211)
+.. -+.+...|..|+.+|...|++.+|.-.-+..... ...+.-+...++ .++.- ..--++|..++++.+. ++|+
T Consensus 361 q~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~ 436 (564)
T KOG1174|consen 361 QML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI 436 (564)
T ss_pred Hhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence 874 2346788999999999999999988776655431 122333443332 23332 2234788889999888 8887
Q ss_pred h-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951 876 C-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF 949 (1211)
Q Consensus 876 ~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~ 949 (1211)
. .+-..++..+...|.+++++.++++.+.. -||....+.+++.+.....+++|++.|..+++.+|. |..+.
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 5 66778888888999999999999998753 678888888999999999999999999999988866 54443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=5.1e-11 Score=119.91 Aligned_cols=122 Identities=7% Similarity=-0.080 Sum_probs=58.7
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCH
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 927 (1211)
.|.=.++++-|+.+|+++++.|+. +++.|.+++-+|.-.++++-++..|++++..-..|+ ..+|+.++.+....|++
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 333334444444444444443332 233344444444445555555555555543222222 22455555555555555
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
.-|...|+-++..++. +..++++|+-.-.+.|++++|..++....
T Consensus 412 nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 5555555555555443 55555555555555555555555555444
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=6.5e-11 Score=119.13 Aligned_cols=231 Identities=11% Similarity=0.029 Sum_probs=183.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 000951 705 NAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCH-SLILGFCE 783 (1211)
Q Consensus 705 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~ 783 (1211)
+.+...|.+.|.+.+|+..|+...+. .|-+.||..|..+|.+..+++.|+.+|.+-++ ..|-.+||. .....+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 56777888888888888888887754 55667777888888888888888888888887 567777765 34477788
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHH
Q 000951 784 TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFV 863 (1211)
Q Consensus 784 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 863 (1211)
.++.++|.++|+..++. .+.++.....+...|.-.++.+-|+..|+++++.|+ .++..|++++-.|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888888875 233455556666677778888888888888888885 4677888888888888888888888
Q ss_pred HHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 864 LRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 864 ~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
|.+++..-.+|+. +.|.+++......|++.-|.+.|+-++..+ +.+.++++.++..-.+.|++++|..+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8888876666764 778888888888899999999999888663 5667788899888899999999999999888765
Q ss_pred c
Q 000951 942 L 942 (1211)
Q Consensus 942 ~ 942 (1211)
|
T Consensus 460 P 460 (478)
T KOG1129|consen 460 P 460 (478)
T ss_pred c
Confidence 3
No 79
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=3.6e-09 Score=110.99 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=150.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000951 643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMAND 722 (1211)
Q Consensus 643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 722 (1211)
.|++..|.++..+..+.+ .--...|..-..+--..|+.+.+-.++.++.+.--.+.....-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 445555555444443322 111222333333344445555555555544433212333333344444444555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 000951 723 LLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-------LTCHSLILGFCETGMLEVGFKFL 794 (1211)
Q Consensus 723 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~ 794 (1211)
-..++.+. .| .+........+|.+.|+|.+...+..++.+.|.-.|. .+|..+++-....+..+.-.+.+
T Consensus 175 ~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 55555432 23 3444455555555555555555555555555443332 23444444333333333333344
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC
Q 000951 795 KKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP 874 (1211)
Q Consensus 795 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p 874 (1211)
+....+ ...++....+++.-+.++|..++|.++..+..+....|.. ...-.+.+-++...=++..++.++ ..|
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~ 325 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHP 325 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCC
Confidence 443332 3334555556666666777777777776666655444431 111223345555555555666555 334
Q ss_pred C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951 875 K-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 875 ~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p 944 (1211)
+ +..+.+|+..|.+.+.|.+|...|+.+++. .|+...|..+++++.+.|+..+|.+.+++.+.+-.+|
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 356777777777777777777777766654 6777777777777777777777777777776543333
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2e-10 Score=122.86 Aligned_cols=197 Identities=14% Similarity=0.075 Sum_probs=121.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN 884 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~ 884 (1211)
...+..++..|...|++++|.+.++++.+.. +.+...+..++..|...|++++|+..|++.++ ..|+ ...+..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 3445555566666666666666666665432 22345555666666666666666666666665 3443 355566666
Q ss_pred HHHhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHH
Q 000951 885 GMCRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFV 963 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~ 963 (1211)
.+...|++++|.+.|+++.+.. .+.....+..++.++...|++++|.+.++++++..+. +...+..++.++...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 6666777777777777766432 1223445566677777777777777777777776544 5666777777777777777
Q ss_pred HHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 964 DALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 964 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
+|...++..... .|+ ...+..++..+...|++++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777776665554 343 3355556666667777777777666554
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=4.4e-10 Score=120.25 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 000951 775 HSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI 854 (1211)
Q Consensus 775 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 854 (1211)
..++..+...|++++|.+.++++++.. +.+...+..++..|...|++++|.+.|+++.+.. +.+...+..++..+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 334444444445555555544444421 1123344444455555555555555555554432 12334445555555555
Q ss_pred cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951 855 AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 855 g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
|++++|+..|+++++....|. ...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|...
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554222222 2445556666667777777777777766542 33455666677777777777777777
Q ss_pred HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
++++++..+ +++..+..++..+...|+.++|..+.+.+.
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777776632 255666666777777777777777655443
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=5.7e-10 Score=126.29 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=122.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-----CCC-CC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHH-----CCCC-CC-hh
Q 000951 777 LILGFCETGMLEVGFKFLKKMIAE-----GTM-VD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNM-----LGVV-PD-TN 842 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~ 842 (1211)
+...|...+++++|..+|++++.- |.. |. ..+++.|...|.+.|++++|...++++.+ .+.. |. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 445566666666666666665542 111 11 23455555566666666666666555532 1111 11 22
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcC----C---C
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALG----I---S 908 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~---~ 908 (1211)
.++.++..+...+++++|+.+++..++ .-..+++ .++..|+..|.+.|+++||.++|+++++.. - .
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 355666677777777777777777664 1122222 668888888888888888888888886431 1 1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----Ccc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLV-P-TIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
-....++.|+..|.+.+++.+|.++|.+.+.. |+. | ...+|.+|+.+|...|++++|+++-..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 12346678888888888888887777776542 221 2 347899999999999999999998553
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=2.9e-08 Score=101.13 Aligned_cols=298 Identities=11% Similarity=0.020 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH-HHHHH
Q 000951 595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPD-RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV-MFTCL 672 (1211)
Q Consensus 595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l 672 (1211)
+.-...+...+...|++.+|+..|...++.+ |+ ..++..-...|...|+...|+.-+.++++ +.||-. .-..-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQR 112 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHh
Confidence 3334445666667777777777777777642 22 22333344556677777777777777777 567632 23334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--H----------HH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHH
Q 000951 673 VDGLFKAGQSKAAMHISKIMDKEGVYPDT--I----------AF--NAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLA 737 (1211)
Q Consensus 673 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~----------~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 737 (1211)
...+.++|.++.|..-|+.+++.....+. . .| ...+..+...|+...|+.....+.+ +.| |..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhH
Confidence 45667777777777777777665321110 1 11 1122234457888888888888884 466 777
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----HHH
Q 000951 738 TYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF----NVL 812 (1211)
Q Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l 812 (1211)
.|..-..+|...|++..|+.-++.+.+ +.. +..++.-+-..+...|+.+.++...++.++ +.||.... ..|
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence 777788888889999988888887766 333 334455566777788888888888888888 56663221 111
Q ss_pred -------H--HHHHhcCcHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHH
Q 000951 813 -------M--RKCCEAGEMGKAFDLFNIMNMLGVVPDTN---TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQY 879 (1211)
Q Consensus 813 -------~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~ 879 (1211)
- ......++|.++++..+...+.......+ .+..+..+|...|++.||+....++++ +.|+ ..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHH
Confidence 1 12233445555555555554433221111 222333344445555555555555555 5554 2445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
..-+.+|.....|++|+.-|+.+.+.
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555555555555555555443
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.2e-06 Score=95.89 Aligned_cols=344 Identities=17% Similarity=0.186 Sum_probs=169.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHH
Q 000951 291 VKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLAR 370 (1211)
Q Consensus 291 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 370 (1211)
...|.+++|..+|.+-+. |..|=..|-..|.+++|+++-+.=-.-.+ ..||..-.+-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 355666777776666554 33333445556666666665443211111 123433344444455666666
Q ss_pred HHHHHH----------HHCCC---------CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 000951 371 SLLERM----------RTNGI---------SISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFC 431 (1211)
Q Consensus 371 ~l~~~~----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 431 (1211)
+.|++. .+... ..|...|.-....+-..|+++.|+.+|....+ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 555432 11110 01223333344444455666666666655432 455556666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 000951 432 KVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAED 511 (1211)
Q Consensus 432 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 511 (1211)
-+|+.++|-++-++ .-|......+.+.|-+.|++.+|...|..+.. +..-|. +|+.+++++-+.
T Consensus 950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR-lcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR-LCKENDMKDRLA 1013 (1416)
T ss_pred eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH-HHHhcCHHHHHH
Confidence 66666666655433 12445555566666666666666666655432 111121 233333332222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH--------
Q 000951 512 YVGHMKRIGVVPNSITFDCMIDGYGTLG-DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRF-------- 582 (1211)
Q Consensus 512 ~~~~~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~-------- 582 (1211)
-+-.|.. ..|.+ .....|-..| ....|..+ |-+.|.+..|.++
T Consensus 1014 nlal~s~---~~d~v---~aArYyEe~g~~~~~AVmL----------------------YHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 1014 NLALMSG---GSDLV---SAARYYEELGGYAHKAVML----------------------YHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHhhcC---chhHH---HHHHHHHHcchhhhHHHHH----------------------HHhhcchHHHHHHHHhhcccH
Confidence 2211111 00110 1111121222 33333333 3333333333332
Q ss_pred ----HHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 000951 583 ----LNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVS 658 (1211)
Q Consensus 583 ----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 658 (1211)
+.. ...+..|+...+.-.+.++...++++|..++....+. ..-+ .+|...+..-..++-+.|.-
T Consensus 1066 aL~lIa~--DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE~mTp 1133 (1416)
T KOG3617|consen 1066 ALDLIAK--DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAELMTP 1133 (1416)
T ss_pred HHHHHHH--hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHHhcCc
Confidence 211 2344557888888888888888898888887766542 1122 23444444444444444322
Q ss_pred cCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951 659 KRTFSPN----NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMA 720 (1211)
Q Consensus 659 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 720 (1211)
...-.|+ ......+...|.++|.+..|-+-|-++-.. ...+.++.+.|+.++-
T Consensus 1134 ~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1134 TKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKI 1190 (1416)
T ss_pred CcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceE
Confidence 1112333 245667778899999999988777666211 2345667778877653
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-08 Score=110.97 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=164.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CH----HHHHHHHH
Q 000951 706 AVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP--DK----LTCHSLIL 779 (1211)
Q Consensus 706 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~----~~~~~l~~ 779 (1211)
.+..+..+..+++.|.+.+....+. .-+..-++....+|...|.+.+.+..-....+.|..- +. ..+..++.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3455555566666666666666643 2344445556666777777666666666655544321 00 11222345
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchh
Q 000951 780 GFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQ 858 (1211)
Q Consensus 780 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 858 (1211)
+|.+.++++.|+.+|.+.+...-.|+ ...+....+++........-.+ |. ..-...-+..+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHH
Confidence 77788999999999999877533322 3444556777777766655433 33 222334477888999999
Q ss_pred hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 859 ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM 937 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 937 (1211)
+|+..|.++++ .+|+ ...|.+.+.+|.+.|.+..|++--+..++. .++....|..-+.++....+|++|++.|++.
T Consensus 376 ~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 7786 488999999999999999999999999887 3666778888888999999999999999999
Q ss_pred HhCCcccCHHHHHHHHHHhhh
Q 000951 938 LRMRLVPTIATFTTLIHKFCK 958 (1211)
Q Consensus 938 ~~~~~~p~~~~~~~L~~~~~~ 958 (1211)
++.+|. +......+..++..
T Consensus 453 le~dp~-~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPS-NAEAIDGYRRCVEA 472 (539)
T ss_pred HhcCch-hHHHHHHHHHHHHH
Confidence 998855 55555555555544
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=2.1e-09 Score=104.33 Aligned_cols=202 Identities=13% Similarity=0.026 Sum_probs=165.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGM 886 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~ 886 (1211)
+...|+-.|...|++..|.+-++++++.+ +.+..+|..++..|.+.|..+.|.+.|+++++ +.|+. ...++.+.-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 44556678889999999999999988754 33477888899999999999999999999998 88875 7888899999
Q ss_pred HhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHH
Q 000951 887 CRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDA 965 (1211)
Q Consensus 887 ~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A 965 (1211)
|.+|++++|...|+++++.. ......+|..++.+-.+.|+.+.|.+.|+++++.++. .+.+...++....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999998643 2334557888888899999999999999999998876 778888999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 966 LKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 966 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
...++.....+ .+...+....+.+-...|+-+.+.++-..+.. .-|..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s 240 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYS 240 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence 99888776654 37777777777787888999988888777754 34444
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.2e-07 Score=106.96 Aligned_cols=240 Identities=14% Similarity=0.110 Sum_probs=141.7
Q ss_pred CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C--------CC
Q 000951 279 NEVTYNTLIN--GFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEM-G--------LR 347 (1211)
Q Consensus 279 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~ 347 (1211)
|..|...+++ .|...|++|.|.+-.+.+++ ...|..|.+.+.+..+.+-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5556666654 35667888888777766653 456777777777777777666655555421 1 11
Q ss_pred cCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 000951 348 PNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLI 427 (1211)
Q Consensus 348 p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 427 (1211)
|+ .+=..+.-.....|.+++|..++.+-...+ .|=..|-..|.+++|.++-+.=-+ +. -..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHH
Confidence 22 111111122345677888888877766544 233456667778887777654221 11 123444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 000951 428 NGFCKVGMTRKAKAVLCKMY----------RDG---------LVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGS 488 (1211)
Q Consensus 428 ~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 488 (1211)
.-+-..++.+.|++.|++.. ... -..|...|......+-..|+.+.|+.+|..+..
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 44555666666666665431 111 022334455555555567777777777776543
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951 489 DHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMV 552 (1211)
Q Consensus 489 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (1211)
|-+++...|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345666677778888887765542 366666677788888888888888777654
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=2.9e-08 Score=101.12 Aligned_cols=323 Identities=15% Similarity=0.088 Sum_probs=190.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 000951 633 YTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFN-AVMDG 710 (1211)
Q Consensus 633 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~ 710 (1211)
..-+...+...|++..|+..|..+++. .|+ ..++..-...|...|+-..|+.-+...++. +||..... .-...
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 444555555666666666666666552 232 233333445555556666665555555543 45543221 12233
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951 711 FSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG 790 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 790 (1211)
+.++|.+++|..=|+.+... .|+..+- ..++.+.- ..++ .......+..+...|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~-------~~~e---------~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLA-------LIQE---------HWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHH-------hHHH---------HHHHHHHHHHHhcCCchhhH
Confidence 45566666666666665543 2211100 00000000 0000 01112233455678999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHc
Q 000951 791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK 870 (1211)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 870 (1211)
+.+...+++- .+.|...+.....+|...|+...|+.-++.+.+.. ..++.++.-+...+...|+.+.++...++.++
T Consensus 175 i~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 175 IEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 9999999985 45678888888999999999999998888776532 34578888888999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHH
Q 000951 871 GLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIA 947 (1211)
Q Consensus 871 g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~ 947 (1211)
++||+..... .-+.+.+..+.++.|. .....++|.++++..+++++.+|+. ...
T Consensus 252 -ldpdHK~Cf~------~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 252 -LDPDHKLCFP------FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred -cCcchhhHHH------HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 8998732221 0111222222222222 1234566777777777777766542 123
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
....+-.++...|++.+|++........ +||. .++..-+.+|....+||.|+.-|+...+
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344555666677777777766655443 6653 3666667777777777777777777655
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=2.4e-09 Score=117.27 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 000951 703 AFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILG 780 (1211)
Q Consensus 703 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 780 (1211)
.|..+...|...|++++|...|++..+. .| +...|+.++..+...|++++|+..|+++++ +.|+ ..+|..++.+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3444555555666666666666666542 34 455666666666666666666666666665 4452 3455555556
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 000951 781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMN 833 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 833 (1211)
+...|++++|++.++++++. .|+..........+...+++++|++.|++..
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66666666666666666653 2322111111122334455666666665443
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=3.7e-09 Score=115.86 Aligned_cols=94 Identities=9% Similarity=-0.058 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMR 814 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 814 (1211)
..|..++..|...|++++|+..|+++++ ..| +...|+.++..+...|++++|+..|+++++. .|+ ..++..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3455555555555555555555555555 334 3345555555555555555555555555552 232 344455555
Q ss_pred HHHhcCcHHHHHHHHHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~ 834 (1211)
++...|++++|++.|++..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555554
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=4.3e-08 Score=112.91 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
+++..++..|...|++++|+.+++++++ ..|. ...|...+..+-+.|++++|.+.++.+.+.+ ..|..+.+..+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy 271 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHH
Confidence 3556777788888888888888888888 7786 4788888888889999999999888888764 4556666667778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCccc--CH----HHH--HHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLVP--TI----ATF--TTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~p--~~----~~~--~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
+.++|+.++|.+.+....+.+..| |. -+| ..-|.+|.+.|++..|++-|..+.
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888899999988888877765443 22 234 445677888888888888665543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.4e-08 Score=99.74 Aligned_cols=282 Identities=15% Similarity=0.067 Sum_probs=137.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCCHH
Q 000951 605 TCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTC-LVDGLFKAGQSK 683 (1211)
Q Consensus 605 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~ 683 (1211)
+.+..++.+|++++..-.+.. +.+......|..+|....++..|-..|+++.. ..|...-|.. -...+.+.+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcccH
Confidence 344455555555555444432 11333344445555555555555555555544 2333322221 223444555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 000951 684 AAMHISKIMDKEGVYPDTIAFNAVM--DGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNT 761 (1211)
Q Consensus 684 ~A~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (1211)
+|+++...|... ++...-..-+ ......+++..+..+.++.... .+..+.+..+-...+.|+++.|.+-|+.
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHH
Confidence 565555555321 1111111111 1122345555555555555421 1444445555555666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------C---------------HhhHHHHH
Q 000951 762 MKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-------------D---------------CFTFNVLM 813 (1211)
Q Consensus 762 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~---------------~~~~~~l~ 813 (1211)
+.+.+--....+|+ +.-+..+.++++.|+++..++++.|+.. | ...+|.-.
T Consensus 170 AlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 66653333344554 3333445566666666666666654331 1 01122222
Q ss_pred HHHHhcCcHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Q 000951 814 RKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN 891 (1211)
Q Consensus 814 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 891 (1211)
.++.+.|+++.|.+.+-.|.- .....|++|..+++-.- ..+++-+...-+.=.++ ++|-+ .||-.+.-.||+..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHH
Confidence 345566777777766655531 11223455555444322 23445555555555554 55643 677777777777766
Q ss_pred hhhHHHHHH
Q 000951 892 FQGAFKLKD 900 (1211)
Q Consensus 892 ~~eA~~~~~ 900 (1211)
++-|..++-
T Consensus 326 f~lAADvLA 334 (459)
T KOG4340|consen 326 FDLAADVLA 334 (459)
T ss_pred HhHHHHHHh
Confidence 666655543
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=8.3e-11 Score=89.19 Aligned_cols=49 Identities=49% Similarity=0.998 Sum_probs=32.2
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951 208 PNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLC 256 (1211)
Q Consensus 208 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 256 (1211)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666655
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=6.2e-08 Score=111.68 Aligned_cols=290 Identities=12% Similarity=0.029 Sum_probs=179.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-----
Q 000951 710 GFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFC-E----- 783 (1211)
Q Consensus 710 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~----- 783 (1211)
.+...|++++|.+.+..-... +..........+..+.+.|+.++|..+|+.+++ ..|+...|...+..+. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~--rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID--RNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554432 222233444555666666666666666666666 3465555554443332 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHH
Q 000951 784 TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK-AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHF 862 (1211)
Q Consensus 784 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 862 (1211)
....+.-..+|+++...- |.......+.-.+..-..+.. +......++..|++ .++..+-..|....+..-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 123455566666655532 222222222222222122332 22333444444432 344455555554444433334
Q ss_pred HHHHHHHc----C---------C-CCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 863 VLRGMAEK----G---------L-TPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 863 ~~~~~~~~----g---------~-~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
++...... + . .|.. .++..++..|...|++++|+++.++++++. |..+..|...+.+|-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 44443321 1 1 2222 467888999999999999999999999883 5557788899999999999
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC--ch----HHHHH--HHHHHHhCCChh
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL--DV----VSYNV--LISGLCANGDVM 998 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~----~~~~~--l~~~~~~~g~~~ 998 (1211)
+.+|.+..+.+.+++.. |-..-..-+..+.+.|++++|.+.+......+..| |. ..|+. .+.+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999876 77777777888899999999999877766554444 11 24543 455899999999
Q ss_pred HHHHHHHHHHH
Q 000951 999 PAFELYEEMKH 1009 (1211)
Q Consensus 999 ~a~~~~~~~~~ 1009 (1211)
.|.+.+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=1.7e-08 Score=98.07 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=132.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951 738 TYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC 816 (1211)
Q Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 816 (1211)
+...|+-.|.+.|++..|..-++++++ ..| +..+|..+...|.+.|+.+.|.+.|++++... +.+-.+.|+.+.-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 455667778888888888888888887 556 34577777788888888888888888888742 22456778888888
Q ss_pred HhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhh
Q 000951 817 CEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQG 894 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~e 894 (1211)
|.+|++++|...|+++.....-+ ...+|.+++-+-.+.|+.+.|...|++.++ .+|+. .+...++......|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 88888888888888877521111 256677777777777777777777777777 66653 556666666677777777
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 895 AFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 895 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
|..+++.....+ .+....+-.-+.+-.+.|+.+.|.+.=.+..+
T Consensus 192 Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777766665543 25555555445555556665555554444443
No 96
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=8.9e-11 Score=89.03 Aligned_cols=49 Identities=43% Similarity=0.969 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHH
Q 000951 313 PNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFC 361 (1211)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 361 (1211)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.3e-06 Score=96.23 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=119.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 000951 216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGK 295 (1211)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 295 (1211)
=++.+.+.|++++|.+...++...+ +-|...+..-+-++.+.+++++|+.+.+.-... ..+.+-+-.=..+..+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3455666777778887777777654 445566666666777777777777444332110 0011111111233457788
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHh-HHHHHHHHHHhcCChHHHHHHHH
Q 000951 296 IQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEV-SYGALLNGFCKHAKFDLARSLLE 374 (1211)
Q Consensus 296 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~l~~ 374 (1211)
.|+|...++-... -|..+...-.+.+.+.|++++|+++|+.+.+.+...-.. .-..++.+- ..-.+. +
T Consensus 95 ~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~-- 163 (652)
T KOG2376|consen 95 LDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-L-- 163 (652)
T ss_pred HHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-H--
Confidence 8888888873221 133456666677888899999999998887765322111 111111111 111111 1
Q ss_pred HHHHCCCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CC-CCHh-----hHHHHHHHHHhcCCHHH
Q 000951 375 RMRTNGISI--SCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDG--------LN-PDLI-----TFSVLINGFCKVGMTRK 438 (1211)
Q Consensus 375 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~-p~~~-----~~~~li~~~~~~g~~~~ 438 (1211)
+......| +-..+......+...|++.+|+++++...+.+ .. -+.. .-..|...+-..|+..+
T Consensus 164 -~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 -LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred -HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111112 11222223445667788888888887773211 00 0111 11223344556788888
Q ss_pred HHHHHHHHHHCCCCCCH
Q 000951 439 AKAVLCKMYRDGLVPNK 455 (1211)
Q Consensus 439 A~~~~~~m~~~g~~p~~ 455 (1211)
|..++...+... ++|.
T Consensus 243 a~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHhc-CCCc
Confidence 888877777765 3443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=5.7e-09 Score=114.52 Aligned_cols=249 Identities=11% Similarity=0.012 Sum_probs=173.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch
Q 000951 778 ILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF 857 (1211)
Q Consensus 778 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 857 (1211)
+.-+.+.|++.+|.-.|+.+++.+ +.+...|..|+......++-..|+..+++.++.. +.+.....+|+-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 334556677777777777777652 2345677777777777777777777777777643 23466677777777777777
Q ss_pred hhHHHHHHHHHHcCCCCChhHHHHH------H--HHHHhcCChhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHH
Q 000951 858 QESHFVLRGMAEKGLTPKCTQYITL------I--NGMCRVGNFQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVE 928 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~~~~~~l------~--~~~~~~g~~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 928 (1211)
.+|+.++.+.+. ..|.......- . ........+....++|-.+. +.+...|+.+...|+.+|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~--~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIR--NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHH--hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 777777777765 22211000000 0 00011112233445555554 5555689999999999999999999
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
+|++.|+.++...|. |...|+.||..++...+.+||+..|++..++ .|... ++++|+-.|...|.+++|.+++-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999998876 9999999999999999999999999876665 99877 8899999999999999999998765
Q ss_pred HH---cCCc--cC----hhhHHHHHHHHHhcccch
Q 000951 1008 KH---KGLC--PN----STTYSVLIDAISKKENNL 1033 (1211)
Q Consensus 1008 ~~---~g~~--p~----~~~~~~l~~~~~~~~~~~ 1033 (1211)
+. ++-. .. ...|..+-..+.-.++.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 43 2111 11 246777766666666544
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.2e-06 Score=92.44 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCCh
Q 000951 810 NVLMRKCCEAGEMGKAFDLFN--------IMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPKC 876 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~~ 876 (1211)
-..+......|+++.|++++. ...+.+..|. +-.++...|.+.+..+-|..++.+++. ..-.+..
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 333444445555555555555 3333332222 223344444444444444444444332 0011221
Q ss_pred -hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951 877 -TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 877 -~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
..+..++..-.+.|+-++|...++++.+. .+++..+...++.+|++.. .+.|..+
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 44555555666779999999999999876 4778888888888888765 6677765
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=4.3e-07 Score=103.98 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM 813 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 813 (1211)
...|..++..+...|+.+.+...+....+... .++... .......+...|++++|.+.++++++.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44455555555555555555555555443211 112111 1112234445566666666666666542 222222221 2
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH
Q 000951 814 RKCCE----AGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC 887 (1211)
Q Consensus 814 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 887 (1211)
..+.. .+..+.+.+.++... ...|+ ......++..+...|++++|+..++++++ ..|+. ..+..++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHH
Confidence 12222 233333333333211 11122 23334455566666667777777777666 55543 45566666666
Q ss_pred hcCChhhHHHHHHHHHHcCC-CCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 888 RVGNFQGAFKLKDEMEALGI-SSSD--VAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
..|++++|...+++.++... +++. ..|..++..+...|++++|+..|+++....
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 77777777777766664321 1121 123456666667777777777777665443
No 101
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=1.3e-07 Score=103.03 Aligned_cols=203 Identities=7% Similarity=-0.019 Sum_probs=138.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC-cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch--
Q 000951 782 CETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAG-EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAF-- 857 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 857 (1211)
...++.++|+..+.++++. .|+ ..+|+....++...| .++++++.++++++.+ +.+..+|+....++.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3456667777777777763 333 445666666666666 4677777777777643 23455676666666666653
Q ss_pred hhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc---CC----HHH
Q 000951 858 QESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC---GK----VEE 929 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~e 929 (1211)
++++..++++++ .+|+. .+|...+.++.+.|++++|++.++++++.+ +.+..+|+..+.++.+. |. .++
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 567777778877 77754 778888888888888888888888888764 55666777777666554 22 256
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhh----CCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHh
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKE----AKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCA 993 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 993 (1211)
++++..++++..|. |..+|+.++.++... ++..+|...+..... ..|+.. ....|+..|+.
T Consensus 202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 78888888888776 888999999888873 455678777655443 356444 67778887775
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3.6e-08 Score=108.41 Aligned_cols=258 Identities=14% Similarity=0.074 Sum_probs=146.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 000951 711 FSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLE 788 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~ 788 (1211)
+.+.|++.+|.-.|+..++. .| +...|..|+......++-..|+..+++.++ ++|+. .....|...|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence 55788888898889888865 56 788899999999999999999999999988 77844 56677888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951 789 VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 789 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
+|++.++.-+...++ |..+... ...+.+..- +-.++... +..-.++|-++.
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHH
Confidence 899988888764221 0000000 000000000 00011111 111122222222
Q ss_pred -HcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHH
Q 000951 869 -EKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIA 947 (1211)
Q Consensus 869 -~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~ 947 (1211)
+.+..+|+..+..|+-.|.-.|+++.|...|+.++... |.|...|+.||..++...+.+||+..|++++++.|. -+.
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR 499 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVR 499 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eee
Confidence 23333444555555555556666666666666665442 444555666666666666666666666666665433 445
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHH---HHhcCC----CC--chHHHHHHHHHHHhCCChhHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKGT---MELSGV----KL--DVVSYNVLISGLCANGDVMPAFEL 1003 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~~---~~~~~~----~p--~~~~~~~l~~~~~~~g~~~~a~~~ 1003 (1211)
++.+||-.|...|.|+||.+.|-. |+..+- .| +...|.+|-.++...++.|.+.++
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 666666666666666666554332 111110 11 123555555555555555544443
No 103
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=3.5e-07 Score=99.69 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=148.8
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcH
Q 000951 745 GYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEM 822 (1211)
Q Consensus 745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 822 (1211)
.+...+..++|+..+.++++ +.|+. .+|+....++...| .+++++..++++++.+. .+..+|+....++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 34445677888888888887 56744 45666666666666 57888888888887532 2455677666666666653
Q ss_pred --HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc---CCh----
Q 000951 823 --GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV---GNF---- 892 (1211)
Q Consensus 823 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~---g~~---- 892 (1211)
+++++.++++++.+ +.+..+|+..+.++...|++++|+..++++++ .+|. ..+|...+.++.+. |..
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccH
Confidence 67788888887754 34677888888888888888888888888888 6674 46677777666554 222
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK 958 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~ 958 (1211)
++++++..+++.. .|.+..+|+.+..++.. .++..+|.+++.++++.++. +..++..|+.+|+.
T Consensus 200 e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 4677777777766 36777788888888877 34567788998888887655 77788888888875
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=2.3e-06 Score=98.07 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH--hhHHH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VDC--FTFNV 811 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~ 811 (1211)
......++..+...|++++|...++++++ ..|+ ...+..+..++...|++++|+..+++.+..... ++. ..+..
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 34445556667777777777777777776 3443 345556667777777777777777777664221 222 23445
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~~ 834 (1211)
+..++...|++++|++.|+++..
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhc
Confidence 66777777777777777777653
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.5e-06 Score=85.68 Aligned_cols=315 Identities=14% Similarity=0.123 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHH
Q 000951 248 YNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNEL-IDGHC 326 (1211)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~ 326 (1211)
+.+.+..+.+..++.+|++++....+..+. +....+.|..+|....++..|...++++... .|...-|... .+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 444555556666777777776666555332 6667788888888888999999999888765 4554444432 45677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 000951 327 CKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNG--FCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEA 404 (1211)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 404 (1211)
+.+.+.+|+++...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+.....+.+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 888999999998888653 333333333333 335788888888888766433 334455555667789999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHH
Q 000951 405 MQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY----STLIYYFCKMGKVTEAMKVYAV 480 (1211)
Q Consensus 405 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~ 480 (1211)
.+-|+...+-|--.....||..+..| +.|+++.|++...+.+++|++..+..- +-.+++- ..|+ -..++..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHH
Confidence 99999887754333456777666544 678899999999999888764322110 0000000 0010 0111111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 000951 481 MNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRI-GVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS 559 (1211)
Q Consensus 481 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 559 (1211)
. -+..+|.-...+.+.++++.|.+.+..|... .-..|++|...+.-.- ..+++.+..+-+.-+++... -.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 1 1123444445567788888888888887632 1234666665543221 24455555555555665433 23
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000951 560 IFTYGSLLKGLCKGGNLKEAKRFLNS 585 (1211)
Q Consensus 560 ~~~~~~ll~~~~~~g~~~~A~~~~~~ 585 (1211)
..||..++-.||+..-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 57888888899998888888877655
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=8e-06 Score=106.38 Aligned_cols=265 Identities=12% Similarity=-0.012 Sum_probs=134.7
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--CHhhHHHHHHH
Q 000951 745 GYSKKKDLLMCSMLLNTMKMEGLLPDK----LTCHSLILGFCETGMLEVGFKFLKKMIAEGTM---V--DCFTFNVLMRK 815 (1211)
Q Consensus 745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~ 815 (1211)
.+...|++++|...+++..+.-...+. ...+.+...+...|++++|...++++...... + .......+..+
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344455555555555555442101111 12233444555566666666666665532100 0 11233444555
Q ss_pred HHhcCcHHHHHHHHHHHHH----CCCC--C-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc--CCCCC--hhHHHHHHH
Q 000951 816 CCEAGEMGKAFDLFNIMNM----LGVV--P-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK--GLTPK--CTQYITLIN 884 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~p~--~~~~~~l~~ 884 (1211)
+...|++++|.+.+++... .+.. + ....+..++..+...|++++|...+.+++.. ...|. ...+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6666666666666655533 1110 0 1122334455556667777777666666541 11121 234445666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC-CchHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCcccC---HHHHHHHHHH
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGIS-SSDVAE-----SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT---IATFTTLIHK 955 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~---~~~~~~L~~~ 955 (1211)
++...|++++|...++++...... .....+ ......+...|+.+.|...+........... ...+..++.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 666777777777777776432111 000101 0112334446777777777666543211111 1124556777
Q ss_pred hhhhCCHHHHHHHHHHHHhc----CCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 956 FCKEAKFVDALKLKGTMELS----GVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 956 ~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+...|++++|...++..... +..++. .++..++.+|...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888887776654432 111222 2455666677788888888888777765
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=1.6e-07 Score=90.22 Aligned_cols=113 Identities=10% Similarity=-0.113 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 862 FVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 862 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
.+|++.++ ++|+. +..++.++...|++++|...|+.++... +.+..++..++.++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555555 44543 3345556666666666666666665542 4455566666666666666666666666666655
Q ss_pred cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
|. ++..|..+|.++...|++++|+..|+..... .|+..
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 44 6666666666666666666666666554443 55443
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=9.6e-08 Score=102.74 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=67.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHH--hc--C
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC--RV--G 890 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~--g 890 (1211)
+|...|++++|++++++. .+.+.....+.+|.+.++++.|...++.|.+ +..|. +...++.++. .. .
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCch
Confidence 344445555555444321 1233333344445555555555555555544 33332 1222222222 12 2
Q ss_pred ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH-HHHHHHH
Q 000951 891 NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF-VDALKLK 969 (1211)
Q Consensus 891 ~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~-~~A~~~~ 969 (1211)
.+++|..+|+++.+. .++++.+.+.++.+....|++++|.++++++++.++. ++.++.+++-+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455566666655432 3445555555555555566666666666655555444 555555555555555555 3333444
Q ss_pred HHHHh
Q 000951 970 GTMEL 974 (1211)
Q Consensus 970 ~~~~~ 974 (1211)
.+++.
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=1.8e-05 Score=103.08 Aligned_cols=265 Identities=9% Similarity=-0.018 Sum_probs=142.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHH
Q 000951 711 FSRMGNMMMANDLLSTMRSRKLCPS----LATYNILLHGYSKKKDLLMCSMLLNTMKMEGL---LPD--KLTCHSLILGF 781 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~~~~~l~~~~ 781 (1211)
+...|++++|...+++..+.....+ ....+.++..+...|++++|...+.++....- .+. ..++..+..++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 3446666666666666553211111 12334455556666777777666666553210 011 12334445566
Q ss_pred HhcCChHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHH
Q 000951 782 CETGMLEVGFKFLKKMIAE----GTM--V-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG--VVP--DTNTQDAIIMG 850 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~ 850 (1211)
...|++++|...+++.+.. +.. + ....+..++..+...|++++|...+++..... ..+ ....+..++..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 6677777777776665542 111 0 12233445556666677777777776664321 111 12334445566
Q ss_pred HHhhcchhhHHHHHHHHHHcCCC-CChh---HH--HHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---hHHHHHHHHHH
Q 000951 851 LKRIAAFQESHFVLRGMAEKGLT-PKCT---QY--ITLINGMCRVGNFQGAFKLKDEMEALGISSS---DVAESAMVRGL 921 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~~g~~-p~~~---~~--~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~~~ 921 (1211)
+...|++++|...+.++...... .... .. ......+...|+.+.|...+........... ...+..++.++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 66777777777777776541110 0000 00 0112334456777777777666542111111 11134566677
Q ss_pred HhcCCHHHHHHHHHHHHhC----Cccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 922 AHCGKVEEAMLVLNRMLRM----RLVP-TIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~----~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
...|++++|...++++++. +..+ ...++..++.++...|+.++|...+......
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888887763 1111 2346677788888888888888887766554
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=2.5e-07 Score=88.80 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=92.6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 827 DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
.+|++.++. .|+ .+..++..+.+.|++++|...|+.++. .+|+ ...+..++.++...|++++|...|+++.+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555542 233 355667777788888888888888887 7775 477888888888888888888888888876
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
+ +.+..++..++.++...|++++|+..|+++++..|. ++..|...+.++.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQI 137 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3 667778888888888888888888888888887765 7777766666543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=4.6e-07 Score=102.33 Aligned_cols=221 Identities=15% Similarity=0.107 Sum_probs=140.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951 662 FSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI 741 (1211)
Q Consensus 662 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 741 (1211)
++|--..-..+...+.+.|-..+|..+++.. ..|.-++..|...|+..+|..+..+-.++ +||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 3444444556667777777777777777655 36667777777777777777777776653 567777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 821 (1211)
+++.....--+++|.++.+..-.. +-..+.......++++++.+.++..++.+ +.-..+|..++.+..++++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 777766666667777666654331 11122222234677777777777776632 2235567777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 000951 822 MGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
+..|.+.|...... .|| ...||++..+|.+.|+..+|...++++++.... +...|.+-.....+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 77777777776652 344 667777777777777777777777777764422 22334444445556777777777777
Q ss_pred HHHH
Q 000951 901 EMEA 904 (1211)
Q Consensus 901 ~~~~ 904 (1211)
++..
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 7753
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=4.9e-07 Score=96.36 Aligned_cols=184 Identities=12% Similarity=0.022 Sum_probs=113.3
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hH
Q 000951 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQ 878 (1211)
Q Consensus 805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~ 878 (1211)
....+..++..+...|++++|...|+++....... . ...+..++.+|.+.|++++|+..|+++++ ..|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 35567777778888888888888888887643211 1 24667778888888888888888888887 55543 25
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 879 YITLINGMCRV--------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 879 ~~~l~~~~~~~--------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
+..++.++... |++++|.+.|+++.... +.+...+..+..... .... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~--------------~~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR--------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH--------------HHHHHH
Confidence 66667766654 66777777777776542 222222211110000 0000 001123
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELS-GVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.++..+.+.|++++|+..++..... .-.|. ...+..++.+|...|++++|...++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666777788888888877765544 11222 23677778888888888888887776654
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.71 E-value=0.0019 Score=75.81 Aligned_cols=161 Identities=13% Similarity=0.106 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 000951 773 TCHSLILGFCETGMLE---VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIM 849 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 849 (1211)
+.+.|+..+.+.++.. +|+.+++..+..+ +.|..+--.|+.+|+-.|-+..|.++|+.+--..+..|+..|. +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 3455667777777654 5666666666532 2345555667788888899999999998875444455554443 223
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHH---HHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFK---LKDEMEALGISSSDVAESAMVRGLAHC 924 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1211)
.+...|++.-+...++..++ +--++ .+-..++-+| +.|.+.+-.+ .-+++..........+-+...+.+...
T Consensus 516 ~~~t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556777777777777665 22211 2222233333 4455444333 333332110001111223445666777
Q ss_pred CCHHHHHHHHHHHH
Q 000951 925 GKVEEAMLVLNRML 938 (1211)
Q Consensus 925 g~~~eA~~~~~~~~ 938 (1211)
++.++-...+..+.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 77777666665544
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=7.7e-07 Score=90.44 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=81.7
Q ss_pred hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH-HhcCC--HHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL-AHCGK--VEE 929 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~e 929 (1211)
.++.++++..+++.++ .+|+ ...|..++..|...|++++|...|+++.+.. +.+..++..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4556677777777776 6664 3667777777777777777777777777653 55666667777653 55565 477
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
|.++++++++.+|. +..++..|+..+.+.|++++|+..|+.+.+.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777665 6777777777777777777777777766554
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=1.8e-06 Score=103.63 Aligned_cols=134 Identities=11% Similarity=0.045 Sum_probs=74.9
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHH
Q 000951 802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQY 879 (1211)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~ 879 (1211)
++.+...+..|+.+....|.+++|..+++.+.+. .|| ...+..++.++.+.+++++|+..+++.++ ..|+. ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 3344555555556666666666666666665542 333 34455555555566666666666666655 55543 445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
..++.++.+.|++++|..+|+++... .+.+..++..++..+...|+.++|...|+++++.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555566666666666666542 2344555555555566666666666666665554
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1e-06 Score=99.64 Aligned_cols=221 Identities=11% Similarity=0.024 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951 767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDA 846 (1211)
Q Consensus 767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 846 (1211)
..|-...-..+...+...|-..+|+.++++.. .|..++.+|...|+..+|.++..+-++ -+||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 34444444566788999999999999999864 588899999999999999998888876 3688999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
++++.....-+++|.++++..-. .+-..++......++++++.+.++...+.+ +-...+|...+.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 99999998889999999887543 123344455556899999999999998873 6678899999999999999
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHH
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
++.|.+.|...+...|. +...|+++..+|.+.|+-.+|...++..... +-++. .|.+-......-|.|++|++.++
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--n~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--NYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--CCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999998866 8899999999999999999999988766655 33334 56555555578899999999999
Q ss_pred HHHH
Q 000951 1006 EMKH 1009 (1211)
Q Consensus 1006 ~~~~ 1009 (1211)
.+.+
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 8765
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=1.6e-06 Score=92.39 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
.++..+.+.|++++|+..++++++..|. | .+.+|..++.++...|++++|...++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4667788888888888888888876542 2 457888888888888888888887776554
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.5e-06 Score=88.32 Aligned_cols=130 Identities=10% Similarity=0.094 Sum_probs=109.1
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh-hhhCC--HHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF-CKEAK--FVDA 965 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~-~~~g~--~~~A 965 (1211)
.++.+++...+++.++.+ +.+...|..++..|...|++++|+..|+++++.+|. +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 667788999999998773 888999999999999999999999999999999877 999999999975 67777 5999
Q ss_pred HHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHH
Q 000951 966 LKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLID 1024 (1211)
Q Consensus 966 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 1024 (1211)
.++++..... +|+.. ++..++.++...|++++|+..++++.+. .|.......++.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~ 185 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 9999877766 88554 8899999999999999999999999773 333334444443
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.4e-06 Score=91.75 Aligned_cols=186 Identities=10% Similarity=-0.050 Sum_probs=130.4
Q ss_pred hhHHHHH-HHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------
Q 000951 842 NTQDAII-MGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--------- 910 (1211)
Q Consensus 842 ~~~~~l~-~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--------- 910 (1211)
.+|..+. .++...|++++|...--..++ +++.. .....-+.++.-.++.+.|...|++.+..+....
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 4444443 345567777777777777666 55643 4444555566667777888888888775532111
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc---cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HH
Q 000951 911 --DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV---PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SY 984 (1211)
Q Consensus 911 --~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~ 984 (1211)
...+..-+.-..+.|++.+|.+.|..++..+|. |++..|...+.+..+.|+.++|+.-.+.... ++|... .+
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikal 324 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKAL 324 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHH
Confidence 112333366678899999999999999997754 3667888999999999999999998665443 366544 56
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhccc
Q 000951 985 NVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKEN 1031 (1211)
Q Consensus 985 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~ 1031 (1211)
..-+.++...++|++|.+-+++..+....+.+ ++|.+....+.+..+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 66677888999999999999998775555666 787777666655444
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=4.6e-06 Score=100.26 Aligned_cols=143 Identities=9% Similarity=0.053 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951 767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD 845 (1211)
Q Consensus 767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 845 (1211)
...+...+..|..+....|.+++|...++.+.+ +.|| ......++.++.+.+++++|+..++++...+ +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 334566777777888888888888888888887 5565 4566677788888888888888888888643 23466777
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES 915 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 915 (1211)
.++.++.+.|++++|+.+|++++. ..|+ ..++..++.++...|+.++|...|+++++. ..+....|+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHH
Confidence 788888888888888888888887 5665 477888888888888888888888888765 244444444
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=4.3e-06 Score=83.80 Aligned_cols=153 Identities=20% Similarity=0.090 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH 923 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 923 (1211)
..+...+...|+-+.+..+..+... ..|. .......+....+.|++.+|...+.++... -++|...|+.++.+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 3344444444555555444444332 2221 223333455555555555555555555544 25555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHH
Q 000951 924 CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus 924 ~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
.|+.++|...|.++++..+. ++.+.++|+..|.-.|+++.|..++...... .+ |...-.+++-+....|+.++|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 55555555555555555443 5555555555555555555555554443332 22 33344555555555555555554
Q ss_pred H
Q 000951 1003 L 1003 (1211)
Q Consensus 1003 ~ 1003 (1211)
+
T Consensus 224 i 224 (257)
T COG5010 224 I 224 (257)
T ss_pred h
Confidence 4
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=2.2e-06 Score=92.30 Aligned_cols=245 Identities=11% Similarity=0.016 Sum_probs=101.4
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951 746 YSKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG 823 (1211)
Q Consensus 746 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 823 (1211)
+.-.|+|..++.-++ ... ..|+ ......+.+++...|+++..+. ++... .+|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 344566666665544 221 2221 1222334456666666554332 22222 2344444433333332223333
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 824 KAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
.++.-+++.......+ +.......+.++...|++++|+.++.+. .+.+.....+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4433333322211111 1222222233444556666665555432 12334444455555666666666666665
Q ss_pred HHcCCCCchHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951 903 EALGISSSDVAES---AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL 979 (1211)
Q Consensus 903 ~~~~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p 979 (1211)
.+. ..|..... +.+..+...+++++|..+|+++.+. +.+++.+++.++.++...|+|++|.+++... +..+|
T Consensus 158 ~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a--l~~~~ 232 (290)
T PF04733_consen 158 QQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEA--LEKDP 232 (290)
T ss_dssp HCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHH--CCC-C
T ss_pred Hhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHhcc
Confidence 532 22222111 1111122223456666666665443 2335555555666666666666666554432 22344
Q ss_pred ch-HHHHHHHHHHHhCCCh-hHHHHHHHHHH
Q 000951 980 DV-VSYNVLISGLCANGDV-MPAFELYEEMK 1008 (1211)
Q Consensus 980 ~~-~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 1008 (1211)
+. .+..+++.+....|+. +.+.+...+++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 32 2444455544455554 33444444443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=7.6e-06 Score=89.07 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
...+...+-.+...|++++|+..++..+. ..|++ ......+..+...++.++|.+.+++++... |.....+..++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 34444555556677889999999999887 77876 445566788889999999999999998762 334667788899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhH
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 999 (1211)
+|.+.|+..+|+..++..+..+|+ |+..|..|+.+|...|+..+|...+ +..|+.+|+|++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHH
Confidence 999999999999999999988877 9999999999999999999887763 345778899999
Q ss_pred HHHHHHHHHHcCCccChhhHHHHHHHH
Q 000951 1000 AFELYEEMKHKGLCPNSTTYSVLIDAI 1026 (1211)
Q Consensus 1000 a~~~~~~~~~~g~~p~~~~~~~l~~~~ 1026 (1211)
|+......+++ ++++.-+|..+....
T Consensus 444 A~~~l~~A~~~-~~~~~~~~aR~dari 469 (484)
T COG4783 444 AIIFLMRASQQ-VKLGFPDWARADARI 469 (484)
T ss_pred HHHHHHHHHHh-ccCCcHHHHHHHHHH
Confidence 99999888764 556666777665543
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=6.8e-06 Score=82.41 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHh
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCR 888 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 888 (1211)
..+...+...|+-+.+..+...... ....|......++....+.|++.+|+..++++.. ..|+ ...|+.++.+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 3344444455555544444444322 1122333344455555555666666666666555 4443 3566666666666
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
.|+.++|..-|.++.+. .+.++.+.+.++..|.-.|+++.|..++..+...+.. |..+-.+|+.+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666666654 2445556666666677777777777777776665443 666777777777777777777776
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.0024 Score=70.45 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=59.1
Q ss_pred CCCCChHHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 000951 100 LCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFN 179 (1211)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 179 (1211)
..|.+.+.|..|++-+... ..+++..+++++... ++.+...|...+....+.++++.+..+|.+-+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3466777888888876554 888888888887643 4556678888888888888888888888887654 24566666
Q ss_pred HHHHHH
Q 000951 180 ILINVS 185 (1211)
Q Consensus 180 ~li~~~ 185 (1211)
..+..-
T Consensus 91 lYl~YV 96 (656)
T KOG1914|consen 91 LYLSYV 96 (656)
T ss_pred HHHHHH
Confidence 666544
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.58 E-value=0.0042 Score=72.99 Aligned_cols=222 Identities=11% Similarity=0.078 Sum_probs=133.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHHH
Q 000951 66 KTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRV--YLREGMVEYALETFQLMGFRGFNPSVYTC 143 (1211)
Q Consensus 66 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 143 (1211)
..++|..|...+..+.++. |. .+ +..++.+ +.|.|+.++|..+++.....+.. |..|.
T Consensus 21 d~~qfkkal~~~~kllkk~--------------Pn---~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tL 80 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--------------PN---AL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTL 80 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--------------CC---cH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHH
Confidence 5677888888777776543 21 12 2233333 45889999999888877655433 88999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHc
Q 000951 144 NMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKK 223 (1211)
Q Consensus 144 ~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 223 (1211)
..+-.+|.+.++++.|..+|+..... .|+......+..+|.|.+.+.+-.+.=-+|-+. +.-+...+-++++.+...
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHh
Confidence 99999999999999999999998754 577777788888888888876544433333332 223344545555555543
Q ss_pred C-C---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHH
Q 000951 224 G-R---------YKAAFKLIDCMASKG-IEADVCTYNMFIDDLCRNNRSAKGYLLLK-NMRKRMITPNEVTYNTLINGFV 291 (1211)
Q Consensus 224 g-~---------~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~li~~~~ 291 (1211)
- . ..-|.+.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2 1 123444555555443 11122222333344455666666666663 3333333334444445555566
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 000951 292 KEGKIQVASRVFDEMSMLN 310 (1211)
Q Consensus 292 ~~g~~~~A~~~~~~m~~~g 310 (1211)
+.+++.+-.++-.++..+|
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhcChHHHHHHHHHHHHhC
Confidence 6666666666665555554
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.002 Score=71.07 Aligned_cols=409 Identities=13% Similarity=0.157 Sum_probs=194.1
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 000951 137 NPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTL 216 (1211)
Q Consensus 137 ~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 216 (1211)
+-|+.+|+.|++-+... .+++++..|+++... ++.....|...|..-.+..+++..+.+|.+-... .-++-.|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 56788899999877554 889999999998764 6667788888999999999999999999888765 3456666666
Q ss_pred HHHHHH-cCChHH----HHHHHHH-HHhCCCCCC-HHHHHHHHHHH---------HhcCChHHHHHHHHHHHHCCCCCCH
Q 000951 217 LNWYCK-KGRYKA----AFKLIDC-MASKGIEAD-VCTYNMFIDDL---------CRNNRSAKGYLLLKNMRKRMITPNE 280 (1211)
Q Consensus 217 i~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~p~~ 280 (1211)
++--.+ .|+... ..+.|+- +.+.|..+- ...|+..+.-+ ..+.+++....++..+....+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543332 233222 2223332 333454332 23455554332 3333455566777777654332111
Q ss_pred HHHHH------HHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCChHH---------------HHHHHHHHHhcCC
Q 000951 281 VTYNT------LINGF-------VKEGKIQVASRVFDEMSM--LNFSPNSIT---------------YNELIDGHCCKGN 330 (1211)
Q Consensus 281 ~~~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~g~ 330 (1211)
..|+- =|+.. -+...+-.|++++++... +|+..+..+ |-.+|..=-.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 12211 11110 122345567777766532 243322222 4333332111110
Q ss_pred H--------HHHHHHHHH-HHHCCCCcCHhH-HHHHH----HHHHhcCCh-------HHHHHHHHHHHHCCCCcCHHHHH
Q 000951 331 F--------KEAFRLLAM-MEEMGLRPNEVS-YGALL----NGFCKHAKF-------DLARSLLERMRTNGISISCIAYT 389 (1211)
Q Consensus 331 ~--------~~A~~~~~~-m~~~g~~p~~~t-~~~ll----~~~~~~g~~-------~~a~~l~~~~~~~~~~~~~~~~~ 389 (1211)
- ....-.+++ |.-.+..|+..- |...+ +.+...|+. +++.++++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111111 111223333221 11111 112222332 22333333333222112222222
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 000951 390 SVIDGLCKCG---LLDEAMQLFNKMFKDG-LNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVP-NKIIYSTLIYY 464 (1211)
Q Consensus 390 ~li~~~~~~g---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~ 464 (1211)
.+.+.--..- +.+.....+++++..- ..| ..+|..+++.--+..-.+.|..+|.++.+.+..+ ++..+++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 2221111000 1333334444443321 122 2334455555555555666666666666655444 44455555544
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHH
Q 000951 465 FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNS--ITFDCMIDGYGTLGDGL 542 (1211)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~li~~~~~~g~~~ 542 (1211)
+| .++.+-|.++|+.=++.-.. +.......++.+...++-..|..+|++....++.|+. ..|..+|+-=..-|+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 43 34555666666554443222 3333344555555566666666666666655443333 35555555555556555
Q ss_pred HHHHHHHHHH
Q 000951 543 KAFSMFDEMV 552 (1211)
Q Consensus 543 ~A~~~~~~m~ 552 (1211)
.++++-+++.
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=2.8e-05 Score=94.09 Aligned_cols=147 Identities=9% Similarity=0.032 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 000951 700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLI 778 (1211)
Q Consensus 700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 778 (1211)
+...+..|++.|...+++++|..+.+...+. .| ....|..++..+.+.+++.++..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--------------- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI--------------- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------
Confidence 3456666777777777777777777755542 44 344555555566666665544443 222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh
Q 000951 779 LGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ 858 (1211)
Q Consensus 779 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 858 (1211)
.......++.....+++.+.. ...+..++..|+.+|.+.|+.++|..+|+++++.. +.|+...|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 222222333222223333333 22233455566666666666666666666666544 33455666666666666 666
Q ss_pred hHHHHHHHHHH
Q 000951 859 ESHFVLRGMAE 869 (1211)
Q Consensus 859 eA~~~~~~~~~ 869 (1211)
+|+.++.+++.
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=4.1e-05 Score=75.92 Aligned_cols=197 Identities=13% Similarity=0.040 Sum_probs=128.9
Q ss_pred CChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951 750 KDLLMCSMLLNTMKME---G-LLPDKLT-CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK 824 (1211)
Q Consensus 750 g~~~~A~~~~~~~~~~---g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 824 (1211)
.+.++..+++.+++.. | ..|+..+ |-.+..+....|+.+.|..+++++... ++.+..+...-+-.+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3455555555555431 2 4455443 334455666778888888888887765 33333333333334566788888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
|+++|+..++.+ +.|.+++---+.+....|+.-+|++-+.+.++ .-| |.++|..++..|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888755 44566666666677777877788888888776 444 56788888888888888888888888886
Q ss_pred HcCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951 904 ALGISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIATFTTL 952 (1211)
Q Consensus 904 ~~~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~~~~~L 952 (1211)
-. .|.++..+..+++.+.-.|- ++-|.+.|.++++..+. +...|..+
T Consensus 182 l~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI 231 (289)
T KOG3060|consen 182 LI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI 231 (289)
T ss_pred Hc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence 54 24455556667776655443 66788888888887653 55454443
No 130
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.9e-05 Score=80.54 Aligned_cols=274 Identities=10% Similarity=-0.037 Sum_probs=169.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC
Q 000951 602 LAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAG 680 (1211)
Q Consensus 602 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 680 (1211)
...+.+..++.+|+..+...++..+ -+..-|..-...+...|++++|+--.++.++ +.|. ...+.....++...+
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhH
Confidence 3445667778888888888887642 2334455566667777888888777766665 3332 233444444555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHccCChHHHHHH
Q 000951 681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKL-CPSLATYNILL-HGYSKKKDLLMCSML 758 (1211)
Q Consensus 681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~-~~~~~~g~~~~A~~~ 758 (1211)
+..+|.+.++.- ..+ ....|...++.+..... +|.-.+|..|- .++.-.|++++|.+.
T Consensus 132 ~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 555555444411 000 11112222222221111 23344454443 345567788888777
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------------hhHHHHHHHHHhcCcHHH
Q 000951 759 LNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC-------------FTFNVLMRKCCEAGEMGK 824 (1211)
Q Consensus 759 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~ 824 (1211)
--..++ +.+.. .....-..++...++.+.|...|++.++. .|+. ..+..-++...+.|++.+
T Consensus 192 a~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 766665 33322 22222335556677888888888888773 4442 222333456678899999
Q ss_pred HHHHHHHHHHCC---CCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHH
Q 000951 825 AFDLFNIMNMLG---VVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 825 A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
|.+.|.+.+... ..++.-.|...+.+..+.|+..+|+.-.+.+++ ++|.. ..|..-+.++...++|++|.+.|+
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888532 122355677888888899999999999999888 87764 778888888889999999999999
Q ss_pred HHHHc
Q 000951 901 EMEAL 905 (1211)
Q Consensus 901 ~~~~~ 905 (1211)
++.+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 99765
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.4e-07 Score=63.88 Aligned_cols=32 Identities=50% Similarity=0.844 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 275 MITPNEVTYNTLINGFVKEGKIQVASRVFDEM 306 (1211)
Q Consensus 275 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 306 (1211)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=3e-05 Score=93.88 Aligned_cols=238 Identities=10% Similarity=0.025 Sum_probs=168.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 000951 663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNI 741 (1211)
Q Consensus 663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 741 (1211)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++++++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~--------------- 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N--------------- 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence 334778999999999999999999999977765 4543 3444444467777776666555 3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 821 (1211)
++.......++.-...++..+.+. .-+..++..++.+|.+.|+.++|..+|+++++.. +.|..+.|.++..|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 333344444554444445555552 2345577889999999999999999999999965 44688999999999999 9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHH
Q 000951 822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCT-QYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
+++|.+++.++.+. |...+++.++.++..++.. ..|+.. .+..+.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~---------------- 211 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER---------------- 211 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------
Confidence 99999999988752 5666789999999999988 667652 2332222
Q ss_pred HHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 901 EMEA-LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 901 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
++.. .+...-...+.-+...|...+++++++.+++.+++.++. |..+...|+.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2221 122223334445556677778888999999999888766 7777777877776
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.4e-07 Score=63.80 Aligned_cols=32 Identities=56% Similarity=1.004 Sum_probs=18.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 000951 205 GYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCM 236 (1211)
Q Consensus 205 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 236 (1211)
|+.||.+|||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=5.2e-05 Score=91.78 Aligned_cols=203 Identities=9% Similarity=-0.044 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-----LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF 809 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 809 (1211)
+...|...+.-..+.++.++|.+++++++.. +++.. -.|.+++..-..-|.-+...++|+++-+ +.....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHH
Confidence 5666777777777777777777777777654 43322 2455555544445666666777777766 33334566
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHHHHH
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLINGM 886 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~~~~ 886 (1211)
..|...|.+.+.+++|.++++.|.+. +......|...+..+.++.+-++|..++.++++ .-|. + ......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHH
Confidence 67777777777777777777777653 224456677777777777777777777777776 5554 2 3334445555
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951 887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p 944 (1211)
.+.|+.+.+..+|+-.+.. .|.....|+..++.-.++|..+.+.++|++++..+..|
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 6666666666666666543 24455566666666666666666666666666666554
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.43 E-value=5e-06 Score=79.70 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=61.8
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 864 LRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 864 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
|++++. ..|+. .....++..+...|++++|...|+.+.+.+ +.+...+..++..+...|++++|...++++++.++
T Consensus 6 ~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 6 LKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444 44533 445555556666666666666666665542 44555556666666666666666666666665554
Q ss_pred ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
. +...+..++.++...|++++|+..|+.....
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 5555666666666666666666665544443
No 136
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.39 E-value=1.3e-06 Score=91.50 Aligned_cols=286 Identities=14% Similarity=0.064 Sum_probs=164.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHH--HHHC--CCCC-CHHHHHHHHHH
Q 000951 709 DGFSRMGNMMMANDLLSTMRSRKLCP---SLATYNILLHGYSKKKDLLMCSMLLNT--MKME--GLLP-DKLTCHSLILG 780 (1211)
Q Consensus 709 ~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--g~~p-~~~~~~~l~~~ 780 (1211)
.-+++.|+......+|+..++.|... =...|..|+++|.-.++|++|+++... .++. |-+- ...+...|+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 34677777777777777777665432 134566666677777777777765432 1111 1111 11223345555
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 000951 781 FCETGMLEVGFKFLKKMIAE----GTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIA 855 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 855 (1211)
+--.|.+++|+....+-+.- |-. .....+..|+..|...|+.-.... ..+.|-.++.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~ 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence 55556666666655443321 110 112344444555544443110000 000000011000 1
Q ss_pred chhhHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH----HcCCC-CchHHHHHHHHHHHhcC
Q 000951 856 AFQESHFVLRGMAEK----GLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME----ALGIS-SSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g 925 (1211)
.++.|.+.|.+-++. |-.. --.+|-.|++.|.-.|+++.|+...+.=+ +.|-. ....++..++.++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 233445555554431 1111 12568888889999999999998876643 22211 12336778899999999
Q ss_pred CHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHH----HhcCCCC-chHHHHHHHHHHHhCC
Q 000951 926 KVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTM----ELSGVKL-DVVSYNVLISGLCANG 995 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~g 995 (1211)
+++.|.+.|+..+.+-++. .+....+|++.|.-..+++.|+.++..- ++++-.. ...+++.|+.+|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 9999999988876532221 3466788999999999999999986632 2332222 3458899999999999
Q ss_pred ChhHHHHHHHHHHH
Q 000951 996 DVMPAFELYEEMKH 1009 (1211)
Q Consensus 996 ~~~~a~~~~~~~~~ 1009 (1211)
..+.|....++-++
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988776544
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00015 Score=72.75 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=64.3
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMC----RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
.+..+.+-|...+++|.+ ++ +..+...|+.+|. ..+.+.+|.-+|+++.++ .+|+....+.++.+....|++
T Consensus 148 lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 344445555555555544 22 2233444444443 223566777777777654 466666666666677777777
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
++|..+++.++..+++ ++.++.+++-.--..|.-.++..
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 7777777777776655 66666666655555566555533
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=1e-05 Score=75.80 Aligned_cols=98 Identities=10% Similarity=-0.016 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHH
Q 000951 909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVL 987 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 987 (1211)
.+....+.++..+...|++++|..+|+-+...+|. +...|..||.++...|++++|+..|.....+ .||. ..+.++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~a 109 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHH
Confidence 34455667777888888888888888888887766 8888888888888889999998888766655 6744 488888
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 000951 988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+.+|...|+.+.|.+.|+....
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888998888888888766
No 139
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.34 E-value=4.7e-06 Score=87.38 Aligned_cols=262 Identities=12% Similarity=0.045 Sum_probs=129.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH--Hh--CCCC-CCHHHHHHHHHH
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPN----NVMFTCLVDGLFKAGQSKAAMHISKIM--DK--EGVY-PDTIAFNAVMDG 710 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~-~~~~~~~~li~~ 710 (1211)
+|+.|+....+.+|+.+++.| ..| ...|..|..+|+..+++++|++++..= +. .|-+ ........|...
T Consensus 27 Lck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 566666666777777666655 222 345666667777777777777665421 11 0100 011122223334
Q ss_pred HHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHccCC--------------------hHHHHHHHHHHHHC
Q 000951 711 FSRMGNMMMANDLLSTMR----SRKLCP-SLATYNILLHGYSKKKD--------------------LLMCSMLLNTMKME 765 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~ 765 (1211)
+--.|.+++|.....+-. +.|-.- ....+..|+..|...|+ ++.|.++|.+=++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654432221 111111 23456667777765543 23334444332211
Q ss_pred CCC-CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHHH-
Q 000951 766 GLL-PDK----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMNM- 834 (1211)
Q Consensus 766 g~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 834 (1211)
.-. -|. ..|-.|+..|.-.|+++.|+..++.-+.. |-. .....+..|++++.-.|+++.|.+.|+....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 000 011 24555666666677777777766654331 111 1134566666777777777777777765432
Q ss_pred ---CCCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHHc--CC---CCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 835 ---LGVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK--GL---TPKCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 835 ---~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~---~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
.|-. ...-+..+|++.|.-...+++|+.++.+-+.. .+ .....++.+|++++...|..++|+.+.+..+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1100 01234455666666666666666666554420 01 1122455566666666666666666555554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=1.5e-05 Score=76.32 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951 897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG 976 (1211)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 976 (1211)
+.|+++++.. +.+......++..+...|++++|...++++++.++. +...|..++.++...|++++|...++.....
T Consensus 4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 3566666542 445567788899999999999999999999998765 8899999999999999999999998876655
Q ss_pred CCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhh
Q 000951 977 VKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTT 1018 (1211)
Q Consensus 977 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 1018 (1211)
.|+ ...++.++.+|...|++++|...++...+ +.|+...
T Consensus 81 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 81 -DPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred -CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 675 45888999999999999999999998876 4455533
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=0.00022 Score=86.59 Aligned_cols=202 Identities=14% Similarity=-0.007 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHH
Q 000951 807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-----DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYIT 881 (1211)
Q Consensus 807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~ 881 (1211)
..|...+.-....++.++|++++++++.. +.+ ....|.++.+.-...|.-+...++|+++-+ ..-....|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHHH
Confidence 34444444444445555555555544421 111 022333333333333444444444555444 2212234455
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhC
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEA 960 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g 960 (1211)
|...|.+.+.+++|.++|+.|.+. +.....+|...++.+.++.+-+.|..+++++++.-|.- ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 555555555555555555555433 23444455555555555555555555555555432221 2233344444455555
Q ss_pred CHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCcc
Q 000951 961 KFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCP 1014 (1211)
Q Consensus 961 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 1014 (1211)
+.+.+..+|+..... .| -...|+..+..-.+.|+.+.+..+|+.....++.|
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 555555555544333 33 23345555555555555555555555555544444
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=7.7e-06 Score=83.62 Aligned_cols=132 Identities=18% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 848 IMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
++-..+.++|.+|+..|.++++ ++|.. +.|..-+.+|++.|.++.|++-.+.++..+ +....+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCc
Confidence 3445567788888888888888 78754 667777888888888888888888887663 4455678888888888888
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHH---HHHHHHHHHHhcCCCCchHH
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFV---DALKLKGTMELSGVKLDVVS 983 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~ 983 (1211)
+++|++.|+++++.+|. +...+..|-.+--+.+... .+...++.....+..||...
T Consensus 165 ~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 88888888888887755 6666666666555444443 33333443344444465443
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00042 Score=69.61 Aligned_cols=253 Identities=15% Similarity=0.022 Sum_probs=151.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhH
Q 000951 781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQES 860 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 860 (1211)
+.-.|.|..++..-...... +.+...-..+-++|...|++...+.-.+.. -.|.......+.......++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKEG----KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccccccc----cCChHHHHHHHHHHhhCcchhHHH
Confidence 33445555555444443322 122223333344555555544333221111 122222333333333333333333
Q ss_pred HH-HHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 861 HF-VLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 861 ~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
+. +.+.+.......+......-+..|++.|++++|++...... +.++...-+.++.+..+.+-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 33334332333333444444567889999999988877632 122333335677788889999999999887
Q ss_pred CCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccC
Q 000951 940 MRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPN 1015 (1211)
Q Consensus 940 ~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 1015 (1211)
.+ +..+...|+.++.+ .+.+.+|.-+|+.+-+. ..|.+...+..+.++...|+|++|..+.+..+.+. .++
T Consensus 166 id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 166 ID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred cc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 54 55566667766654 35688899899887652 26677788888888999999999999999987753 346
Q ss_pred hhhHHHHHHHHHhcccchHHHHHHHHHHHHcCCcc
Q 000951 1016 STTYSVLIDAISKKENNLVKGEILLKDIQERGFIS 1050 (1211)
Q Consensus 1016 ~~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~ 1050 (1211)
|.+.+.++-.....|+..+..+.++.+++...-.|
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 78888877777888888887788888876554333
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00026 Score=77.53 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
......+-.+...|++++|+..++.++.. .|.++..+...++++.+.++.++|.+.+++++...|. ....+.+++.+|
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~al 384 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHH
Confidence 45566666778899999999999998865 5777777888899999999999999999999998765 588999999999
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 957 CKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.+.|++.+|+.+++..... .| |+..|..|+.+|...|+..++...+.+...
T Consensus 385 l~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999998766544 67 455899999999999999999988877644
No 145
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.22 E-value=0.015 Score=63.18 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCC-
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTF-------NVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPD- 840 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~- 840 (1211)
++..++....+.++-.+|.+.+.-+.. +.|+.... ..+.++.+. .-+..+-+.+|......++...
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 455555666666666666666665554 33432211 122223321 1123334455555554433322
Q ss_pred hhhHH-HHHHHHHhhcc-hhhHHHHHHHHHHcCCCCCh-h----HHHHHHHHHHhc---CChhhHHHHHHHHHHcCCCCc
Q 000951 841 TNTQD-AIIMGLKRIAA-FQESHFVLRGMAEKGLTPKC-T----QYITLINGMCRV---GNFQGAFKLKDEMEALGISSS 910 (1211)
Q Consensus 841 ~~~~~-~l~~~~~~~g~-~~eA~~~~~~~~~~g~~p~~-~----~~~~l~~~~~~~---g~~~eA~~~~~~~~~~~~~~~ 910 (1211)
.+.|. .-+.-+.+.|. -++|+.+++.+++ +.|.. . ++..+-.+|.++ ....+-+.+-+-+.+.|++|-
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 12221 22233455555 7888999999888 66633 2 222222222211 122223333333345666663
Q ss_pred ----hHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHH
Q 000951 911 ----DVAESAMVRG--LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSY 984 (1211)
Q Consensus 911 ----~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 984 (1211)
..+-+.+.++ +...|++.++.-.-.=..+ +.|++.+|..+|-++....+|+||..++..+ .|+...+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ 528 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhH
Confidence 3355566543 5667888887654333333 4467888888888888888888888876532 5665555
Q ss_pred H
Q 000951 985 N 985 (1211)
Q Consensus 985 ~ 985 (1211)
+
T Consensus 529 d 529 (549)
T PF07079_consen 529 D 529 (549)
T ss_pred H
Confidence 3
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0005 Score=68.52 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=85.2
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA 930 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 930 (1211)
...|+.+-|...+++..+ .-|.. ..-..-+..+...|++++|+++|+..++.+ |.|..++..-+.+.-..|+.-+|
T Consensus 63 ld~~~~~lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHhcchHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 344455555555555443 22432 222223334445666666666666666553 44555555555666666666677
Q ss_pred HHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC---ChhHHHHHHHH
Q 000951 931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG---DVMPAFELYEE 1006 (1211)
Q Consensus 931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~a~~~~~~ 1006 (1211)
++-+...++.-+. |..+|..|+.+|...|+++.|.-+++++.-. .|-++ .+..++..+.-.| +..-+.++|..
T Consensus 140 Ik~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 140 IKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7666666665444 6777777777777777777777776666654 66444 3344555433333 33445666666
Q ss_pred HHH
Q 000951 1007 MKH 1009 (1211)
Q Consensus 1007 ~~~ 1009 (1211)
.++
T Consensus 217 alk 219 (289)
T KOG3060|consen 217 ALK 219 (289)
T ss_pred HHH
Confidence 554
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.13 E-value=3.5e-05 Score=72.21 Aligned_cols=102 Identities=11% Similarity=-0.030 Sum_probs=80.9
Q ss_pred CC-CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951 872 LT-PK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF 949 (1211)
Q Consensus 872 ~~-p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~ 949 (1211)
+. ++ ......++..+...|++++|.++|+.+.... +-+...|..|+-++...|++++|++.|.++...+|. |+..+
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 44 43 3667777888888888888888888887653 456667788888888888888888888888888866 88888
Q ss_pred HHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 950 TTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 950 ~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
..++.++...|+.+.|.+.|+.....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765544
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.9e-05 Score=79.51 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=97.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951 883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF 962 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~ 962 (1211)
++-..+.++|++|+..|.++++.. |.+++.|..-+.+|.+.|.++.|++-.+.++..++. ...+|..||.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 455667899999999999999873 566777778899999999999999999999998765 778999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHH-HHHHHHHhCCChh---HHHHHHHHHHHcCCccCh
Q 000951 963 VDALKLKGTMELSGVKLDVVSYN-VLISGLCANGDVM---PAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 963 ~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~---~a~~~~~~~~~~g~~p~~ 1016 (1211)
++|++.|+... .++|++.+|. .|-.+-.+.+.-+ .+..-.+.....|.-|+.
T Consensus 166 ~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKAL--ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhh--ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999988544 5599888774 4444444444333 333333333334444554
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=8.4e-05 Score=71.80 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=68.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC--HHHHHHHHHHhhhhCCHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSS---DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT--IATFTTLIHKFCKEAKFV 963 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~--~~~~~~L~~~~~~~g~~~ 963 (1211)
.+++..+...++.+.+.. +.+ ..+...++..+...|++++|...|+.+++..+.|. ..+...|+.++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666665432 222 22334456667777777777777777777653332 345566677777777777
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951 964 DALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 964 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
+|+..++..... ...+..+...+.+|...|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777766442211 11233556666777777777777777765
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.08 E-value=0.00073 Score=73.61 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=46.1
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCc---cc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-----chHH-HH
Q 000951 918 VRGLAHC-GKVEEAMLVLNRMLRMRL---VP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-----DVVS-YN 985 (1211)
Q Consensus 918 ~~~~~~~-g~~~eA~~~~~~~~~~~~---~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~-~~ 985 (1211)
+.+|... |++++|++.|+++.+.-- .+ -..++..++..+.+.|+|++|+++|+......++. +... +.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 556666666666554310 11 12445566667777777777777776655432221 1111 22
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 000951 986 VLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 986 ~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
..+-++...|+...|.+.++...
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33335566777777777777663
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=8.7e-05 Score=71.72 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
...++..+...|++++|...|+.+.+....+. ..+...++.++...|++++|+..++.+... ...+..+..+|.+|
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 33444555555555555555555554321111 123334455555555566665555442211 11344555556666
Q ss_pred hhhCCHHHHHHHHH
Q 000951 957 CKEAKFVDALKLKG 970 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~ 970 (1211)
...|++++|...|+
T Consensus 129 ~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 129 LAQGDYDEARAAYQ 142 (145)
T ss_pred HHCCCHHHHHHHHH
Confidence 66666666665554
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00093 Score=63.02 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=103.6
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHH
Q 000951 872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFT 950 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~ 950 (1211)
+.|....-..|+++....|++.||...|+++..--+-.|+...-.++.+....++..+|...++++.+.+|.- ++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5677777778888888888888998888888865567777788888888888899999999999888876322 455667
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMK 1008 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 1008 (1211)
.++..|...|++++|+..|+..... -|++..-...+..++++|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 7888899999999999988876665 6776655555566778888877765554443
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.97 E-value=0.00018 Score=71.89 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
..+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|+..++++++..+. +...+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 4556666666667777777777777664422221 345666777777777777777777777776544 5666666777
Q ss_pred HhhhhCCH
Q 000951 955 KFCKEAKF 962 (1211)
Q Consensus 955 ~~~~~g~~ 962 (1211)
++...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 77666663
No 154
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.95 E-value=0.042 Score=58.49 Aligned_cols=281 Identities=12% Similarity=0.069 Sum_probs=171.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHH
Q 000951 714 MGNMMMANDLLSTMRSRKLCPSLATYNILLH--GYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEV 789 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~ 789 (1211)
.|+-..|.++-.+..+. +..|......|+. +-.-.|++++|.+-|+.|+. .|... -...|...-.+.|..+-
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 56666666665554421 2224444444443 33446888888888888875 23222 22233333346788888
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCChhhH--HHHHHH---HHhhcchhhHHH
Q 000951 790 GFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQ--DAIIMG---LKRIAAFQESHF 862 (1211)
Q Consensus 790 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~--~~l~~~---~~~~g~~~eA~~ 862 (1211)
|.++-+.+... .|. ...+...+...+..|+|+.|+++.+.-.+ .-+.++..-- ..|..+ -.-..+...|..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888877663 333 56677777888888888888888876543 2233442211 111111 111234566666
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHHHHhC
Q 000951 863 VLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA-MLVLNRMLRM 940 (1211)
Q Consensus 863 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 940 (1211)
.-.+..+ +.||. -.-..-+.++.+.|+..++-.+++.+-+. .|.+.++.. ..+.+.|+.... ++=.++...+
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhc
Confidence 6667666 77875 33445567888999999999999999865 566655433 334566652221 1222333344
Q ss_pred CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Q 000951 941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCAN-GDVMPAFELYEEMKH 1009 (1211)
Q Consensus 941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 1009 (1211)
.++ +......++.+-...|++..|..--+... ...|....|..|+.+-... |+-.++....-+..+
T Consensus 325 k~n-naes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 KPN-NAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Ccc-chHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444 77788888888888999988877644333 3378878888888865554 888888777665544
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00019 Score=80.61 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=61.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
.+......|++++|+..|+++++.. +.+..++..++.+|...|++++|+..++++++.++. +..+|..+|.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3445556666666666666666552 445556666666666677777777777777666654 66666677777777777
Q ss_pred HHHHHHHHHHHHhcCCCCchH
Q 000951 962 FVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 962 ~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
+++|+..|+..... .|+..
T Consensus 86 ~~eA~~~~~~al~l--~P~~~ 104 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDS 104 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCH
Confidence 77777766655544 56444
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00018 Score=80.95 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=80.3
Q ss_pred HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 848 IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
+..+...|++++|+..|+++++ ..|+ ...|..++.++...|++++|+..++++++.. +.+..+|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 4455677888888888888887 7775 4778888888888888888888888888763 5567788888888888899
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHK 955 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~ 955 (1211)
+++|+..|+++++.+|. +......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999888887765 55555554443
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00028 Score=78.61 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
++..+...++-.+|.++++++++. .+.+...+...+..+.+.++++.|+++.+++.+..|. +..+|..|+.+|...|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCC
Confidence 334444444444444444444432 2333333444444455555555555555555554433 44455555555555555
Q ss_pred HHHHHHHHH
Q 000951 962 FVDALKLKG 970 (1211)
Q Consensus 962 ~~~A~~~~~ 970 (1211)
+++|+..+.
T Consensus 284 ~e~ALlaLN 292 (395)
T PF09295_consen 284 FENALLALN 292 (395)
T ss_pred HHHHHHHHh
Confidence 555554433
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.056 Score=61.58 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=176.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHH
Q 000951 608 SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN----NVMFTCLVDGLFKAGQSK 683 (1211)
Q Consensus 608 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 683 (1211)
-|++++|.++|-+|..+++ -+..+.+.|++-...++++. |+...| ...+..+...+.....|+
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899888888766532 24456677888777666643 211222 467888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 000951 684 AAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMK 763 (1211)
Q Consensus 684 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 763 (1211)
+|.+.|.+-... ...+++|.+...+++-+.+.+.+.+ +....-.++.++...|--++|.+.|-+--
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 999888765211 2456777777777777666665543 55666678888899999999988875542
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCcHHHHHHHHHHHHHCCCCCChh
Q 000951 764 MEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV-LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTN 842 (1211)
Q Consensus 764 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 842 (1211)
. |. ..+.+|...++|.+|.++-++..- |...+..+ -..-+...++.-+|++..+
T Consensus 880 ~----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~R------------ 934 (1189)
T KOG2041|consen 880 L----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDR------------ 934 (1189)
T ss_pred C----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhh------------
Confidence 2 22 245678888899999888765432 22221111 1112333455555555443
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
+.|++-.|..++.+|.+ ++..|-. .-...|+..+. .+.-++.+-.++...+|...+...
T Consensus 935 ----------ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLv--E~h~~~ik~~~~~~~~g~~~dat~---- 998 (1189)
T KOG2041|consen 935 ----------KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLV--ENHRQTIKELRKIDKHGFLEDATD---- 998 (1189)
T ss_pred ----------hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhcCcchhhhh----
Confidence 34555556666666654 2222221 22223333222 223334444444333332222111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhCCC
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLDVVSYNVLISGLCANGD 996 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~ 996 (1211)
+...|-..++-.+.+...+- ..+..+..|+.-....|.+..|++---.+.... +-|....|..++-+-+....
T Consensus 999 ---lles~~l~~~~ri~~n~Wrg---AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 999 ---LLESGLLAEQSRILENTWRG---AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred ---hhhhhhhhhHHHHHHhhhhh---HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhh
Confidence 12223333333333332220 122333445555566799999987511112111 12434466655555555555
Q ss_pred hhHHHHHHHHHH
Q 000951 997 VMPAFELYEEMK 1008 (1211)
Q Consensus 997 ~~~a~~~~~~~~ 1008 (1211)
+--..+.+-++.
T Consensus 1073 FGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1073 FGTCSKAFMKLE 1084 (1189)
T ss_pred hhhhHHHHHHHH
Confidence 555555554443
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00024 Score=66.21 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
+..++.++...|++++|...|+.+..... +....++..++.++.+.|++++|...++++++.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33344444444444444444444433210 011233344444444444444444444444443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.0019 Score=70.47 Aligned_cols=167 Identities=12% Similarity=0.059 Sum_probs=82.0
Q ss_pred HHHHccCChHHHHHHHHHHHHCC---CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 000951 744 HGYSKKKDLLMCSMLLNTMKMEG---LLPDK--LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE 818 (1211)
Q Consensus 744 ~~~~~~g~~~~A~~~~~~~~~~g---~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 818 (1211)
..|...|++++|.+.|.++.+.- -.+.. ..|......| +..++++|++.++++.. .|..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~---------------~y~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIE---------------IYRE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH---------------HHHh
Confidence 44556666777666666654310 00110 1222222333 23355566555555543 4556
Q ss_pred cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-cchhhHHHHHHHHHHc---CCCCC--hhHHHHHHHHHHhcCCh
Q 000951 819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-AAFQESHFVLRGMAEK---GLTPK--CTQYITLINGMCRVGNF 892 (1211)
Q Consensus 819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~---g~~p~--~~~~~~l~~~~~~~g~~ 892 (1211)
.|++..|-+.+.++ +..|... |++++|++.|+++.+. .-.|. ...+..++..+.+.|++
T Consensus 107 ~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 107 AGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp CT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred cCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 66666655554433 3455555 6777777777776641 11221 14556666677777777
Q ss_pred hhHHHHHHHHHHcCCCCc-----h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 893 QGAFKLKDEMEALGISSS-----D-VAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
++|.+.|+++.......+ . ..+...+-++...|+...|.+.+++..+..
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777777654321111 1 122233445555666777777766666544
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.83 E-value=0.00029 Score=70.26 Aligned_cols=91 Identities=11% Similarity=-0.050 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
..+..++..+...|++++|+..|++++.....+ ...++..++.++...|++++|++.++++++..+. ....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 455666666666777777777777776542222 2235667777777777777777777777776543 4556666666
Q ss_pred Hhh-------hhCCHHHHHHH
Q 000951 955 KFC-------KEAKFVDALKL 968 (1211)
Q Consensus 955 ~~~-------~~g~~~~A~~~ 968 (1211)
++. ..|++++|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 666 55565544433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00056 Score=68.38 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN 884 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~ 884 (1211)
.+..++..|...|++++|+..|+++++....+. ...+..++..+.+.|++++|+..++++++ ..|+ ...+..++.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 445555555566666666666666554322221 24556666666666666666666666666 5554 355556666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
++...|+...+...++.+.. .+++|+++++++++.+|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCc
Confidence 66666666555555444432 15666777777766553
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.0002 Score=63.29 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
.++..+...|++++|...++++.+.. +.+..++..++.++...|++++|.+.++++++..+. +..++..++.++...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 33444444444444444444444331 222234444444444445555555555554444332 3344444555555555
Q ss_pred CHHHHHHHHH
Q 000951 961 KFVDALKLKG 970 (1211)
Q Consensus 961 ~~~~A~~~~~ 970 (1211)
++++|...+.
T Consensus 83 ~~~~a~~~~~ 92 (100)
T cd00189 83 KYEEALEAYE 92 (100)
T ss_pred hHHHHHHHHH
Confidence 5555554444
No 164
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.076 Score=56.65 Aligned_cols=281 Identities=13% Similarity=0.075 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChH
Q 000951 643 KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVD--GLFKAGQSKAAMHISKIMDKEGVYPDTI--AFNAVMDGFSRMGNMM 718 (1211)
Q Consensus 643 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~ 718 (1211)
.|+-..|.++-.+..+. +..|......|+. .-.-.|+++.|.+-|+.|... |... -...|.-.-.+.|..+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 55666666655554432 3344444444443 233457778888777777531 2211 1122322333577777
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHH--HH-HhcCChHHHH
Q 000951 719 MANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEG-LLPDKLT--CHSLIL--GF-CETGMLEVGF 791 (1211)
Q Consensus 719 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~--~~~l~~--~~-~~~g~~~~A~ 791 (1211)
.|..+-++.-.. .| -...+...+...+..|+|+.|+++.+.-++.. +.++..- -..|+. +- .-..+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777777776643 44 45667777777788888888888877765432 2333321 111221 11 1123445555
Q ss_pred HHHHHHHHcCCCCCHhhHH-HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-
Q 000951 792 KFLKKMIAEGTMVDCFTFN-VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE- 869 (1211)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~- 869 (1211)
..-.+..+ +.||..--. .-...+.+.|+..++-.+++.+=+....|+ +...|....-.+-++.-++...+
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhcCCCcHHHHHHHHHHH
Confidence 55555555 444432211 112355666666666666666554332222 12223333333333333333332
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 000951 870 KGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC-GKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 870 ~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 940 (1211)
..++|++ ++...++.+-...|++..|..--+.+.. ..|...+|..|+++-... |+-.+....+-+++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1255544 5555555555566666555555444433 245555555555554333 6666666666665554
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.79 E-value=0.00036 Score=64.95 Aligned_cols=102 Identities=9% Similarity=-0.054 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLI 953 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~ 953 (1211)
++..++..+...|++++|.+.|+++.+... +....++..++.++.+.|++++|.+.|++++...|.. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666666677777777777777764421 1113455666777777777777777777777654331 245666777
Q ss_pred HHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951 954 HKFCKEAKFVDALKLKGTMELSGVKLDV 981 (1211)
Q Consensus 954 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 981 (1211)
.++.+.|++++|...++..... .|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 7777777777777776665554 4543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=4.1e-05 Score=65.82 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHH
Q 000951 925 GKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
|++++|+.+++++++..+. |+...|..++.+|.+.|++++|+.+++. . ...|+. .....++.+|...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555554432 1334444455555555555555555443 1 113322 233344445555555555555
Q ss_pred HHH
Q 000951 1003 LYE 1005 (1211)
Q Consensus 1003 ~~~ 1005 (1211)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=4.9e-05 Score=65.32 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=51.7
Q ss_pred cCChhhHHHHHHHHHHcCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 889 VGNFQGAFKLKDEMEALGI-SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
+|++++|+.+|+++.+... .++...+..++.+|.+.|++++|+.++++ .+.++. +......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777765432 12455566677777777777777777777 433332 44555566777778888888877
Q ss_pred HHHH
Q 000951 968 LKGT 971 (1211)
Q Consensus 968 ~~~~ 971 (1211)
+++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=0.0001 Score=59.70 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV 981 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 981 (1211)
++..+...|++++|+..|+++++..|. +..+|..++.++...|++++|+..|+..... .|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 456677777777777777777777655 7777777777777777777777777766554 5653
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00056 Score=76.22 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK 958 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~ 958 (1211)
-..|+..+...+++++|+.+++++.+.. |. +...++.++...++-.+|+++++++++..|. +...+...+..|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4456667777889999999999998653 43 4556788888889999999999999987766 88888888999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 959 EAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 959 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
.|+++.|+.+.+..... .|+.. +|..|+.+|...|+|++|+.....+
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999997766655 89655 9999999999999999999887754
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.0003 Score=62.12 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA 922 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1211)
+..++..+...|++++|+..++++++ ..|+. ..+..++.++...|++++|.+.++.+.... +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 34445555555666666666666555 44432 455556666666666666666666665542 333445666666666
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 000951 923 HCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 923 ~~g~~~eA~~~~~~~~~~~ 941 (1211)
..|++++|...++++++..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 6666777776666665543
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.72 E-value=4.7e-05 Score=52.54 Aligned_cols=33 Identities=48% Similarity=0.837 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 000951 317 TYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPN 349 (1211)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 349 (1211)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 172
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.72 E-value=4.7e-05 Score=52.55 Aligned_cols=33 Identities=48% Similarity=0.814 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 000951 212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEAD 244 (1211)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 244 (1211)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666655554
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.001 Score=77.94 Aligned_cols=124 Identities=10% Similarity=-0.014 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC--------ChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCC
Q 000951 857 FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG--------NFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 857 ~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g--------~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 926 (1211)
..+|+.+|+++++ .+|+. ..|..++.++.... +++.+.+..+++.... .+.++.++..++......|+
T Consensus 358 ~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 5566777777776 66664 34444443333221 2233344444433321 23344566666666666777
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNV 986 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 986 (1211)
+++|...++++++.+ |+...|..+|..+...|+.++|.+.|+....+ +|...+|+.
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~ 491 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHH
Confidence 777777777777766 45667777777777777777777776654443 666555543
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=0.0012 Score=60.13 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHH
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVR 919 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~ 919 (1211)
..++.++...|+.++|+.+|++.+..|..+.. ..+..++..+...|++++|+.++++.... .+. +......++.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHH
Confidence 34555666666666666666666665555432 55666666666666666666666666543 122 2223333445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 000951 920 GLAHCGKVEEAMLVLNRML 938 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~ 938 (1211)
++...|+.++|+..+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5566666666666554443
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0011 Score=68.83 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=57.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHH
Q 000951 872 LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIA 947 (1211)
Q Consensus 872 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~ 947 (1211)
.+|+ ...|..|+.+|...|++..|...|.++.+. -++++.++..++.++..+.. ..++.++|++++..++. |..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 4453 355666666666666666666666666554 24555555555554433211 45566666666666554 666
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+...|+..+...|++.+|...++.|...
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666666666666655544
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00052 Score=68.40 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHH-HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 892 FQGAFKLKDEME-ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 892 ~~eA~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
+..+...+..+. ..+.......+..++..+...|++++|+..|++++...+.| .+.+|..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445554443 22222334567788889999999999999999999876543 346899999999999999999999
Q ss_pred HHHHHhcCCCCchH-HHHHHHHHHH-------hCCChhHHHHHHHHH
Q 000951 969 KGTMELSGVKLDVV-SYNVLISGLC-------ANGDVMPAFELYEEM 1007 (1211)
Q Consensus 969 ~~~~~~~~~~p~~~-~~~~l~~~~~-------~~g~~~~a~~~~~~~ 1007 (1211)
++..... .|+.. .+..++.+|. ..|+++.|...+++.
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8876654 67544 6777777777 888888776666543
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00013 Score=59.87 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC-CHHHHHHHHHHHHh
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA-KFVDALKLKGTMEL 974 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~ 974 (1211)
+.+|..++..+...|++++|+..|+++++.+|. ++.+|..++.+|...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555566666666666666666666665544 5556666666666666 46666665554443
No 178
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.64 E-value=0.00098 Score=69.52 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=22.5
Q ss_pred hhcCcchhhhhHHHHhhccccceeecCcccchHHHHH
Q 000951 1141 KLFCPCCLLHYLLKLIYQGSKQRVIIGPAVSLEEVMK 1177 (1211)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1177 (1211)
-|.|+.| . |++|.+..--.+-...+.+|+...
T Consensus 405 ~rsCP~C--r---klrSs~~rpgfvgs~~Vesest~~ 436 (518)
T KOG1941|consen 405 TRSCPNC--R---KLRSSMKRPGFVGSVPVESESTDR 436 (518)
T ss_pred CCCCccH--H---HHHhhccCCCCcCCCccccccccc
Confidence 5899999 3 899977655566666666666543
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.16 Score=55.59 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHH
Q 000951 388 YTSVIDGLCKCGLLDEAMQLFNKMFKD----GLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYR---DGLVPNKIIYST 460 (1211)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ 460 (1211)
-+..++.+...|++.++..+++++..+ ....++.+||.++-.+.+. .|-++.+ ..+-|+ |.-
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYe 199 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYE 199 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHH
Confidence 355677788888888888888777654 2336777787755554432 2333322 223332 333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--C---hHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 000951 461 LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGG--K---VCEAEDYVGHMKRIGVVPNSI-TFDCMIDG 534 (1211)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~---~~~A~~~~~~~~~~g~~p~~~-~~~~li~~ 534 (1211)
++..|.+.=..-++. .-..+.|.......++....-.- + +-.+.+.+ ...-+.|+.. ....++..
T Consensus 200 milfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W---e~~yv~p~~~LVi~~L~~~ 270 (549)
T PF07079_consen 200 MILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW---ENFYVHPNYDLVIEPLKQQ 270 (549)
T ss_pred HHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH---HhhccCCchhHHHHHHHHH
Confidence 444443321111110 00011122222222222221111 1 11222222 2222344432 33444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 000951 535 YGTLGDGLKAFSMFDEMVKLGHHP----SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSA 592 (1211)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 592 (1211)
+.+ +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-+.-..|.
T Consensus 271 f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 271 FMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred Hhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 444 4555555554444322111 1356777788888888888888888877766554
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0015 Score=59.50 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIH 954 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~ 954 (1211)
...++.++-..|+.++|+.+|+++++.|.+.. ...+-.++..+...|++++|+.++++.++..|.+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44566777777888888888888877665543 3355567777778888888888888777654331 2233344556
Q ss_pred HhhhhCCHHHHHHHH
Q 000951 955 KFCKEAKFVDALKLK 969 (1211)
Q Consensus 955 ~~~~~g~~~~A~~~~ 969 (1211)
++...|+.++|+..+
T Consensus 84 ~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 84 ALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHCCCHHHHHHHH
Confidence 777778888887764
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.61 E-value=0.0099 Score=56.38 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCchHHHHH
Q 000951 840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALG---ISSSDVAESA 916 (1211)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~---~~~~~~~~~~ 916 (1211)
.+.....|+.+....|++.||...|++.+.--+.-|......++++....+++.+|...++.+.+.+ -+|| ..-.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence 3333444455555555555555555555441122234445555555555555555555555554432 1111 1223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
++..|...|++.+|...|+.++..-|.| ..-...+..+.++|+..+|..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHHH
Confidence 3455555566666666666665544322 2222234455556655555443
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0028 Score=65.94 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=96.4
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhc
Q 000951 899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA---KFVDALKLKGTMELS 975 (1211)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~ 975 (1211)
.+.-+.. .|.|..-|..|+.+|...|+...|...|.++.+..++ |+..+..++.++..+. ...+|..++++....
T Consensus 145 Le~~L~~-nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQ-NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHh-CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3333433 4788999999999999999999999999999999876 9999999998876653 467888898877766
Q ss_pred CCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHH
Q 000951 976 GVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLID 1024 (1211)
Q Consensus 976 ~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 1024 (1211)
+|++. +...|+..+...|++.+|...++.|.+ +.|....|..++.
T Consensus 223 --D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie 268 (287)
T COG4235 223 --DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIE 268 (287)
T ss_pred --CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHH
Confidence 88655 788888899999999999999999977 3444444544443
No 183
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.50 E-value=0.02 Score=60.15 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCC---CCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCc-------
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGL---TPK--CTQYITLINGMCRVGNFQGAFKLKDEMEAL--GISSS------- 910 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~---~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~~------- 910 (1211)
..+..+....+.++++++.|+.+.+... +|- ...+..|+..+.+..++++|+-+..++.+. ....+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455555556666666666666654211 111 155666666666666666666666555422 11111
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCccc-CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLR----MRLVP-TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
..+.+.|..++...|++-.|.+.-+++.+ +|-.| .......++++|+..|+.+.|..-|+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 11344556666666666666555555433 33222 33455667777777777766665544
No 184
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.50 E-value=0.00016 Score=49.40 Aligned_cols=32 Identities=41% Similarity=0.601 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 000951 212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEA 243 (1211)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 243 (1211)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 185
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.48 E-value=0.00017 Score=49.23 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 000951 317 TYNELIDGHCCKGNFKEAFRLLAMMEEMGLRP 348 (1211)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 348 (1211)
+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00037 Score=57.25 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCC
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-KVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~ 941 (1211)
+|..++..+...|++++|+..|+++++.. +.+..++..++.++...| ++++|++.++++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555442 334445555555555555 4555555555555543
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0062 Score=71.51 Aligned_cols=84 Identities=12% Similarity=-0.047 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 858 QESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNR 936 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 936 (1211)
.++.....+.......| +...|..++-.....|++++|...++++++.+ |+...|..++..+...|+.++|.+.|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455544422233 34667777777778899999999999998874 5778888999999999999999999999
Q ss_pred HHhCCcc
Q 000951 937 MLRMRLV 943 (1211)
Q Consensus 937 ~~~~~~~ 943 (1211)
+++++|.
T Consensus 479 A~~L~P~ 485 (517)
T PRK10153 479 AFNLRPG 485 (517)
T ss_pred HHhcCCC
Confidence 9998765
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.0006 Score=55.13 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
++..+...|++++|.+.|+++++.. +.+..++..++.++...|++++|+..|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4555666666777777776666553 44566666777777777777777777777766543
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00046 Score=56.46 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951 923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN 985 (1211)
Q Consensus 923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 985 (1211)
..|++++|++.|+++++..|. +..++..++.+|.+.|++++|..+++.+... .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 456677777777777766655 6666667777777777777777776655544 56544443
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.042 Score=55.30 Aligned_cols=150 Identities=13% Similarity=-0.010 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 823 GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 823 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
+-.++.|++=. ....+.++..+.-+|.+.-...++.+.++....-++.....|+..-.+.|+.+.|..+|+++
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44555555433 23345666666677777778888888877332225577778888888888888888888877
Q ss_pred HHcC-----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951 903 EALG-----ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV 977 (1211)
Q Consensus 903 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 977 (1211)
.+.. ..-...+...+..++..+.++.+|...|.++++.++. |+..-++-+-++.-.|+..+|++..+++...
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 5322 2222333445556677788899999999999998876 8888888888888889999999998888866
Q ss_pred CCchH
Q 000951 978 KLDVV 982 (1211)
Q Consensus 978 ~p~~~ 982 (1211)
.|.+.
T Consensus 316 ~P~~~ 320 (366)
T KOG2796|consen 316 DPRHY 320 (366)
T ss_pred CCccc
Confidence 66444
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.30 E-value=0.00027 Score=47.01 Aligned_cols=29 Identities=48% Similarity=0.840 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 317 TYNELIDGHCCKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (1211)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.063 Score=56.64 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
.++..|.+.|.+.-|+.-++.+++.-|.- ...++..++.+|...|..++|.+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44566777777777777777777654321 34556666677777777777766544
No 193
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.27 E-value=0.00029 Score=46.91 Aligned_cols=29 Identities=41% Similarity=0.897 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 000951 212 TYNTLLNWYCKKGRYKAAFKLIDCMASKG 240 (1211)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 240 (1211)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.012 Score=55.79 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGL 991 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 991 (1211)
..+..+.-+...|++++|..+|+-+.-.++. +..-|..|+.++-..|++++|+..|...-.. .+ |+......+..|
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~ 115 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHH
Confidence 4456677778899999999999988887766 8888999999999999999999998765554 44 455788889999
Q ss_pred HhCCChhHHHHHHHHHHH
Q 000951 992 CANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 992 ~~~g~~~~a~~~~~~~~~ 1009 (1211)
...|+.+.|...++...+
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999998876
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.0045 Score=58.59 Aligned_cols=96 Identities=5% Similarity=-0.173 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
......+.-+...|++++|..+|.-+.-.+ +-+...|..|+.++...+++++|+.+|..+..+++. |+......+.+|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~ 115 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHH
Confidence 445556666677888888888888776543 334556677777888888888888888887777655 777777788888
Q ss_pred hhhCCHHHHHHHHHHHHh
Q 000951 957 CKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~ 974 (1211)
...|+.+.|...|.....
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 888888888888776554
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0051 Score=53.49 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHCCCCCCHHHH
Q 000951 213 YNTLLNWYCKKGRYKAAFKLIDCMASKGI-EADVCTYNMFIDDLCRNNR--------SAKGYLLLKNMRKRMITPNEVTY 283 (1211)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~ 283 (1211)
....|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-+.+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677888888888888888888 7888888888877765432 22334444444444455555555
Q ss_pred HHHHHHH
Q 000951 284 NTLINGF 290 (1211)
Q Consensus 284 ~~li~~~ 290 (1211)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 5444443
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.22 E-value=0.0041 Score=69.75 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHH
Q 000951 242 EADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKR--MITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYN 319 (1211)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 319 (1211)
+.+......+++.+....+.+++..++-..+.. ....-..|..++|..|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555555554433 111112233466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhc
Q 000951 320 ELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKH 363 (1211)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 363 (1211)
.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666555555555555555555443
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.21 E-value=0.37 Score=50.95 Aligned_cols=199 Identities=18% Similarity=0.138 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951 807 FTFNVLMRKCCEAGEMGKAFDLFNIMNML-GVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN 884 (1211)
Q Consensus 807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~ 884 (1211)
.........+...+.+..+...+...... ........+...+..+...+.+.++...+..... ..++. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA--LDPDPDLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--CCCCcchHHHHHHH
Confidence 34444555555556666666555555431 1123344455555555555666666666666655 22221 11222222
Q ss_pred -HHHhcCChhhHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 885 -GMCRVGNFQGAFKLKDEMEALGI--SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 885 -~~~~~g~~~eA~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
++...|++++|...|+++..... ......+......+...+++++|+..+.+++...+......+..++..+...|+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 55666666666666666644211 012223333344455666677777777776665432124566666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 962 FVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 962 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+++|...+...... .|+ ...+..+...+...|.++++...+....+
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777765544433 444 23444555544455556666666665543
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.19 E-value=0.0052 Score=68.92 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=95.9
Q ss_pred CCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 000951 345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNG--ISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLIT 422 (1211)
Q Consensus 345 g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 422 (1211)
+.+.+......+++.+....+++.+..++.+..... ...-..|..++|..|.+.|..+.+..++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566677777888777788888888877777652 222234556888888888888888888888888888889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 000951 423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKM 468 (1211)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 468 (1211)
+|.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999988888888888887777777777666666554
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.03 Score=59.00 Aligned_cols=180 Identities=9% Similarity=-0.016 Sum_probs=96.7
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hH
Q 000951 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQ 878 (1211)
Q Consensus 805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~ 878 (1211)
+.......+..+...|++++|++.|+++....+.+. ......++.+|.+.+++++|+..|++.++ ..|++ .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHH
Confidence 333444455566677888888888888876432222 11234566777788888888888888877 55543 33
Q ss_pred HHHHHHHHHhcC---------------C---hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 879 YITLINGMCRVG---------------N---FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 879 ~~~l~~~~~~~g---------------~---~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
+..++.+....+ + ..+|+..|+..++. .|.+ ....+|..-+..+.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S--------------~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNS--------------QYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCC--------------hhHHHHHHHHHHHHHH
Confidence 333333321111 0 12344444444432 1111 1122332222211110
Q ss_pred CcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 941 RLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV----VSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 941 ~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
-..--..++.-|.+.|+|.-|+.-++.+... -|+. .+...+..+|...|..++|.++....
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0011124566677788888887777766544 3432 25567777888888888887776554
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.073 Score=53.64 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCChhHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPKCTQYITL 882 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~~~~~~~l 882 (1211)
+.+.++.++.-.|+|.-...+++++++...+.++.....|+++-.+.|+.+.|...|+...+ .+++.+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44445555555555555555555555544444455555555555556666666655554433 1222233334445
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc
Q 000951 883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p 944 (1211)
+..+.-++++.+|...|+++...+ +.++.+.+.-+-++.-.|+..+|++..+.+++..|.|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 556667788889999998887664 4555666666666667899999999999999877665
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.79 Score=52.77 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=18.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 417 NPDLITFSVLINGFCKVGMTRKAKAVLCKM 446 (1211)
Q Consensus 417 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 446 (1211)
.|.+..|..+.....+.-.++-|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 466777777766655555556666555443
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.043 Score=61.93 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 543 KAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMV 622 (1211)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 622 (1211)
+-+.-++++.+.|-.|+.... ...|+-.|++.+|.++|.+ +|.-..|+++|..|.
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~----------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR----------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH----------------------cCchhhHHHHHHHHH
Confidence 444556777888877876543 3456667888888777754 344455555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 000951 623 QFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSK--RTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPD 700 (1211)
Q Consensus 623 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 700 (1211)
-.+ +..-+...|..++-..+.++--+- .--.|. +-...+...|+.++|..+.
T Consensus 673 MFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~----------- 726 (1081)
T KOG1538|consen 673 MFD----------YAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEIC----------- 726 (1081)
T ss_pred HHH----------HHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhh-----------
Confidence 211 122233444444433333221110 000111 1122333445555554332
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951 701 TIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILG 780 (1211)
Q Consensus 701 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 780 (1211)
...|-.+-+.++-+++... +..+...+..-+.+...+.-|-++|.+|-+ ..++.+.
T Consensus 727 -----------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVql 782 (1081)
T KOG1538|consen 727 -----------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQL 782 (1081)
T ss_pred -----------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhh
Confidence 2223333333333333221 233333444444455556667777776643 1235566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhH
Q 000951 781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQES 860 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 860 (1211)
..+.++|++|..+-++..+ +.|| +|...++-++...+++||.+.|.+ .|+-.||
T Consensus 783 Hve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqkAfhk----------------------AGr~~EA 836 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQKAFHK----------------------AGRQREA 836 (1081)
T ss_pred eeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHHHHHH----------------------hcchHHH
Confidence 6778888888887776544 3333 455556666777777777766644 3677788
Q ss_pred HHHHHHHHH
Q 000951 861 HFVLRGMAE 869 (1211)
Q Consensus 861 ~~~~~~~~~ 869 (1211)
..++++...
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 888877654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.0071 Score=64.16 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
++..++.+|...|++++|+..|+++++
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.07 E-value=0.0059 Score=64.75 Aligned_cols=90 Identities=9% Similarity=-0.046 Sum_probs=61.5
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcC
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALG--ISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 925 (1211)
.+.|++++|+..|+..++ ..|+. .++..++.+|...|++++|...|+.+++.. .+....++..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 445677777777777776 55543 466777777777778888887777776531 1223556666777777788
Q ss_pred CHHHHHHHHHHHHhCCcc
Q 000951 926 KVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~ 943 (1211)
++++|...|+++++..|.
T Consensus 232 ~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 888888888888776544
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0016 Score=53.26 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=33.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
..|++++|++.|+++.+. .|.+..++..++.+|.+.|++++|..++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456666666666666655 24466666666777777777777777777666654
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0088 Score=64.65 Aligned_cols=94 Identities=10% Similarity=-0.045 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL 991 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~ 991 (1211)
.+..++..+.+.+++.+|+..-++++++++. |..++..-|.+|...|+++.|+..|+.+... .|++. +-.-+...-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 3445666667777777777777777777655 7777777777777777777777777766655 67554 334444433
Q ss_pred HhCCChhH-HHHHHHHHHH
Q 000951 992 CANGDVMP-AFELYEEMKH 1009 (1211)
Q Consensus 992 ~~~g~~~~-a~~~~~~~~~ 1009 (1211)
.+...+.+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33333333 3566666654
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.04 E-value=0.13 Score=52.87 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
.++..|.+.|.+..|..-++.+++.-|.. ...++..|+.+|.+.|..+.|..
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45677788888888888888887765432 22455667777777777764443
No 209
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.04 E-value=0.58 Score=49.38 Aligned_cols=63 Identities=21% Similarity=0.027 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKME-GLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 799 (1211)
..+......+...+++..+...+...... ........+......+...+++..+...+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444445555555444444321 0111223333334444444445555555555444
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.011 Score=51.54 Aligned_cols=30 Identities=10% Similarity=0.464 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 000951 402 DEAMQLFNKMFKDGLNPDLITFSVLINGFC 431 (1211)
Q Consensus 402 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 431 (1211)
-+.+.+|+.|+..+++|+..+|+.++..+.
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 345556666666666666666666665554
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.029 Score=57.60 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
.+..+...|++++|++.|+.+........ ......++.++.+.|++++|+..|++.++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344445555555555555543221111 22334444444444444444444444444
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.011 Score=63.85 Aligned_cols=139 Identities=16% Similarity=0.078 Sum_probs=89.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
.-++.+.+.|++..|...|++++.. + -|.+.-+.++..... + .-..++.+|+.+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l------------~~~~~~~~ee~~~~~----~----~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-L------------EYRRSFDEEEQKKAE----A----LKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-h------------hccccCCHHHHHHHH----H----HHHHHhhHHHHHHHhhh
Confidence 4456677778888888887777532 0 011111112222211 1 12336777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHH
Q 000951 961 KFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEI 1038 (1211)
Q Consensus 961 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~ 1038 (1211)
++.+|+......... +|++. ..+.-+.+|...|+++.|...++++++ +.|+. ....++...-.+.....++...
T Consensus 272 ~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 272 EYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876655444 67555 778888888888888888888888866 67777 6666666665666666666666
Q ss_pred HHHHHH
Q 000951 1039 LLKDIQ 1044 (1211)
Q Consensus 1039 ~~~~l~ 1044 (1211)
+++.|-
T Consensus 348 ~y~~mF 353 (397)
T KOG0543|consen 348 MYANMF 353 (397)
T ss_pred HHHHHh
Confidence 776663
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.96 E-value=0.0035 Score=52.08 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
.+|.+.+++++|+++++++++.+|. ++..|...|.++...|++++|...++...+. .|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 3455566666666666666666554 5666666666666666666666666655544 45433
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.19 Score=57.04 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
.++...+..-+.+...+.-|-++|.+|-+ .-.+.......++|++|..+-++..+. .| .+|.-.+.-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~--dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KD--DVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cc--cccchHHHH
Confidence 34444444444455556666666666544 335556666677777777766655432 12 223333333
Q ss_pred HHhcCCHHHHHHHH
Q 000951 921 LAHCGKVEEAMLVL 934 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~ 934 (1211)
++...+++||.+.|
T Consensus 814 LAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhhHHHHHHHH
Confidence 44444444444443
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.038 Score=59.90 Aligned_cols=143 Identities=10% Similarity=-0.024 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCR-VGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
.+|..++....+.+..++|..+|.++++ ..+ ....|...+..-.+ .++.+.|.++|+..++. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3566777777777778888888888874 222 34667777776444 56666699999999876 6778888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLIS 989 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 989 (1211)
.+...|+.+.|..+|++++..-+. . ....|...+.--.+.|+++...++.+.+.+. -|+......+.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 889999999999999999875211 1 2358888888888889999988888777665 555444444444
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.75 E-value=0.17 Score=55.77 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=59.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHh---cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 000951 777 LILGFCETGMLEVGFKFLKKMIAEG---TMVDCFTFNVLMRKCCE---AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMG 850 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 850 (1211)
++-+|....+|+.-+++++.+...- +.....+-..++-++.+ .|+.++|++++..++...-.+++++|..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4444555555555555555554420 00012222233334444 56666666666554443444555666655555
Q ss_pred HHh---------hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 000951 851 LKR---------IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGN 891 (1211)
Q Consensus 851 ~~~---------~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 891 (1211)
|.. ....++|+.+|.+.-+ ++|+..+=.+++..+...|.
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCC
Confidence 532 1236788888888887 66766444444544555554
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=96.75 E-value=0.044 Score=61.04 Aligned_cols=112 Identities=9% Similarity=0.005 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHH-cCCCCCh-hHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 857 FQESHFVLRGMAE-KGLTPKC-TQYITLINGMCRV---------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 857 ~~eA~~~~~~~~~-~g~~p~~-~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
.+.|+.+|.+++. ..++|+. ..|..++.++... ....+|.++-+++.+.+ +.|+.+...++.++.-.|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 3466667777771 2266764 4555544443311 12234444444444443 344444444555444445
Q ss_pred CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 926 KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
+++.|...|+++...+|. .+.+|...+..+.-.|+.++|.+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555554433 44455555555555555555555443
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.68 E-value=0.0088 Score=49.62 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
.+|.+.+++++|.+.++++++.+ |.+...+...+.++...|++++|...|+++++.+|.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45666777777777777776653 556666666777777777777777777777776644
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.059 Score=60.09 Aligned_cols=146 Identities=10% Similarity=-0.033 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHH-cCCCCc-hHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951 891 NFQGAFKLKDEMEA-LGISSS-DVAESAMVRGLAH---------CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE 959 (1211)
Q Consensus 891 ~~~eA~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~ 959 (1211)
..+.|+.+|.++.. ...+|+ ..+|..++..+.. .....+|.++.+++++.++. |+.+...+|.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 34678889999982 223444 4455555444332 23367889999999999977 999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh--hhHHHHHHHHHhcccchHHH
Q 000951 960 AKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS--TTYSVLIDAISKKENNLVKG 1036 (1211)
Q Consensus 960 g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~~a 1036 (1211)
|+++.|...|++...+ .||.. +|+..+....-+|+.++|.+..++..+ +.|.. .+.+.+.-..+-....+++.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCchhhhH
Confidence 9999999999977766 99876 888999999999999999999988644 45544 23333333234445555534
Q ss_pred HHHHH
Q 000951 1037 EILLK 1041 (1211)
Q Consensus 1037 ~~~~~ 1041 (1211)
.-+++
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 43333
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.017 Score=64.05 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=43.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 872 LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD---VAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 872 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
.+|+ ...++.++.+|...|++++|+..|+++++.+ +.+. .+|+.++.+|...|++++|++.++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3443 3666677777777777777777777766652 2222 24666777777777777777777776664
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.50 E-value=0.0031 Score=53.17 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCC---c-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEAL--GISS---S-DVAESAMVRGLAHCGKVEEAMLVLNRML 938 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 938 (1211)
+|..++.+|...|++++|+..|+++++. ...+ . ..++..++.++...|++++|++.+++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555554444321 0000 0 2233444444444444444444444443
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.47 E-value=0.1 Score=58.04 Aligned_cols=177 Identities=11% Similarity=0.115 Sum_probs=103.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HhcCcHHHH
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC--CEAGEMGKA 825 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A 825 (1211)
+..+++.-++.-+++++ +.||..+...++ +-.......+|+++++++++.|-. .+.... ...|..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~~~g~~--- 246 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQHHGHF--- 246 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhhcccch---
Confidence 44566677777777777 667775544333 333456678888888888875311 111100 111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
++........+-...-..++....+.|+.+||++.|+++++ ..|. . .....|+.++...+.+.++..++.+-
T Consensus 247 ---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 247 ---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11111111222233445677777788999999999999886 3342 2 56778888888999999998888887
Q ss_pred HHcCCCCchHHHHHHHHHH-------------HhcCC---HHHHHHHHHHHHhCCc
Q 000951 903 EALGISSSDVAESAMVRGL-------------AHCGK---VEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 903 ~~~~~~~~~~~~~~l~~~~-------------~~~g~---~~eA~~~~~~~~~~~~ 942 (1211)
.+...+.+..+++.-+-.- .+.|- -..|.+.++++.+.+|
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 6554455555444322211 11221 2346788888888663
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.44 E-value=0.026 Score=55.86 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHH-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 000951 104 NPSVFDLLIRVYLR-----EGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATF 178 (1211)
Q Consensus 104 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 178 (1211)
+...|..++..|.+ .|.++-....+..|.+.|+..|..+|+.||+++-+ |.+- -..+|+.+.-.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 44556666666654 47788888889999999999999999999999976 3332 33444443221
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcC
Q 000951 179 NILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKG 224 (1211)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 224 (1211)
| -.+.+-|+.++++|...|+-||..++..+++.+.+.+
T Consensus 115 ------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 ------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1 1234567888999999999999999999988885544
No 224
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.41 E-value=0.052 Score=53.81 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHH-----hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh
Q 000951 137 NPSVYTCNMMLSFML-----KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIV 211 (1211)
Q Consensus 137 ~~~~~~~~~ll~~l~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 211 (1211)
..+-.+|..+++.+. +.|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- ...+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 456777888888776 446777788888899999999999999999998865 4432 2222322221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHH
Q 000951 212 TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSA-KGYLLLKNM 271 (1211)
Q Consensus 212 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m 271 (1211)
-| -.+-+-|++++++|...|+-||..|+..|++.+.+.+..- +...+.=.|
T Consensus 114 -------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 114 -------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred -------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 1234678999999999999999999999999998776543 333333333
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.36 E-value=0.061 Score=58.32 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 000951 422 TFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYY-FCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASL 500 (1211)
Q Consensus 422 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 500 (1211)
+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.-+ .+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 45666666666666777777777766432 2233334333333 2234556667777777666533 3666677777777
Q ss_pred HcCCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 000951 501 CKGGKVCEAEDYVGHMKRIGVVPNS---ITFDCMIDGYGTLGDGLKAFSMFDEMVKL 554 (1211)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (1211)
.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 36777777777778888888887777763
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.011 Score=49.84 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHc--CCC---CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEK--GLT---PK-CTQYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~---p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
+++.++..|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|+++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555555555554431 011 11 25566777777777777777777777653
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.93 Score=45.65 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CcccCH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhcC--CCC-chHHHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRM----RLVPTI-ATFTTLIHKFCKEAKFVDALKLKGTMELSG--VKL-DVVSYNVL 987 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~----~~~p~~-~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l 987 (1211)
....+|.+..++.||-..+.+-... .--|+. ..+...+.++....+|..|...++.--..+ ..| +..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 4455667777777776665443221 111122 345555566667778999999877532222 123 33466777
Q ss_pred HHHHHhCCChhHHHHHH
Q 000951 988 ISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~ 1004 (1211)
+.+| ..|+.+++.++.
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 7776 567777766654
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.17 E-value=0.012 Score=42.84 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 912 VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 912 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
.++..++..|.+.|++++|+++|+++++..|. |+.+|..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 34666777777777777777777777777765 7777766653
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.12 E-value=0.018 Score=63.94 Aligned_cols=62 Identities=13% Similarity=-0.039 Sum_probs=35.8
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDT----NTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
...++.++.+|.+.|++++|+..|+++++. .|+. .+|++++.+|...|+.++|+..++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666553 2331 2356666666666666666666666655
No 230
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.11 E-value=2.9 Score=45.97 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 000951 494 NMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKG 573 (1211)
Q Consensus 494 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 573 (1211)
+..+.-+...|+...|.++..+.. .|+..-|-..+.+++..+++++-.+.... +-++.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 334555666777777777766654 47777888888888888888766554321 12346677778888888
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951 574 GNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDE 620 (1211)
Q Consensus 574 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 620 (1211)
|+..+|..++..+. +..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877776621 14456777888888887765433
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.07 E-value=0.21 Score=48.24 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcCCCCchH
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME-----LSGVKLDVV 982 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~ 982 (1211)
...++..+...|++++|+..+++++..+|- |...|..++.+|...|+..+|+..|+.+. ++|+.|++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 344566667777777777777777776654 77777777777777777777777776442 566666554
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.06 E-value=0.0053 Score=41.52 Aligned_cols=32 Identities=6% Similarity=0.329 Sum_probs=25.1
Q ss_pred HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951 934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL 966 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~ 966 (1211)
|+++++.+|. |+.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777766 8888888888888888888875
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.03 E-value=0.21 Score=44.64 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=43.0
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH---HHHHHHHHHHhcCCH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV---AESAMVRGLAHCGKV 927 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 927 (1211)
...|+.++|++.|.+.+. +-|. ..+|+.-+.++.-+|+.++|+.-++++++..-+.... +|..-+.+|...|+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555554 4443 3445555555555555555555555555432222222 223334455555555
Q ss_pred HHHHHHHHHHHhCC
Q 000951 928 EEAMLVLNRMLRMR 941 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~ 941 (1211)
+.|..-|+.+.+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555555544
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.34 Score=50.80 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=80.8
Q ss_pred hcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCchHHHHHHHHHHHhcCCHHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEAL---GISSSDVAESAMVRGLAHCGKVEE 929 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~e 929 (1211)
.|++.+|-...++.++ --| |..++..--.+|...|+.+.-...+++++.. ++|-.......++-.+...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3455555555555554 333 2344444445555556555555555555422 111111222234455667777777
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHhCCChhHHHHHH
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-----VSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
|.+.-+++++.++. |..+..+++.++-..|+..|+.+....-... -.+. -.|.+.+-.|...+.++.|.++|
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776654 6777777777777777777777763321110 1111 12344444555667778888777
Q ss_pred HH
Q 000951 1005 EE 1006 (1211)
Q Consensus 1005 ~~ 1006 (1211)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.25 Score=48.50 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
+..||.++--+...|+++.|.+.|+..++ ++|.. .+..+-+-++.--|+++-|.+-+-+--+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 44455555555555555555555555555 55542 3334444444455666666655555543
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.94 E-value=0.098 Score=46.65 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-h-H-HHHHHHHHHHhC
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-V-V-SYNVLISGLCAN 994 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~-~~~~l~~~~~~~ 994 (1211)
+.++...|+++.|++.|.+++..-|+ ++.+|++-+.+++-+|+.++|++-+....++.-... . . +|..-+..|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 44556667777777777777666555 666777777777777777777665554443321111 1 1 344445566666
Q ss_pred CChhHHHHHHHHHHHc
Q 000951 995 GDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 995 g~~~~a~~~~~~~~~~ 1010 (1211)
|+-|.|..-|+...+.
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 6666666666655443
No 237
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.90 E-value=3.6 Score=45.28 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 000951 319 NELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKC 398 (1211)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 398 (1211)
+.-|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++... . -+++-|-..+..+.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 334444555666666665554442 35666666666666666666655543221 1 1224456666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 000951 399 GLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVL 443 (1211)
Q Consensus 399 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 443 (1211)
|...+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 6666666655552 1234455566666666665543
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.83 E-value=0.45 Score=53.23 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 915 SAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 915 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
..++....+.|+.+||++.++.+++..|.- +..+...|+.++...+.+.++..++...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345555556666666666666665443221 3345555666666666666666655544
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.88 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=11.2
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 000951 779 LGFCETGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 779 ~~~~~~g~~~~A~~~~~~~~~ 799 (1211)
..|.++|..+-|-..++++-+
T Consensus 99 ~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH
Confidence 455555655555555555443
No 240
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.73 E-value=0.19 Score=48.62 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
|..-+.+..+.+.|+.|+.--.++++.+ +....+...-+.+|.+..++++|+.-|+++++.+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3333344444444444444444444332 2222222333444444444555555555555544
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.67 E-value=3.1 Score=42.92 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
++.-|.+.|.+.-|..-++.+++.-+.- ...++-.|..+|...|-.++|...-+-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4556677777777777777777653221 123444555566666777766665433
No 242
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=2.7 Score=42.20 Aligned_cols=63 Identities=6% Similarity=0.021 Sum_probs=35.3
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCC--ccc---CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC
Q 000951 917 MVRGLAHC-GKVEEAMLVLNRMLRMR--LVP---TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL 979 (1211)
Q Consensus 917 l~~~~~~~-g~~~eA~~~~~~~~~~~--~~p---~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p 979 (1211)
++.+|... .+++.|+..|+++-+.- -+. -..++...+..-...|+|.+|+.+|+++....+..
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445433 55667777777665521 111 12344445555566778888888887776554433
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.66 E-value=4.5 Score=48.74 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=116.6
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951 749 KKDLLMCSMLLNTMKM-------EGLLPDKLTCHSLILGFCETG-----MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC 816 (1211)
Q Consensus 749 ~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 816 (1211)
..|.+.|+.+|+.+.+ .| .....+.+..+|.+.. +.+.|+.++.++...|.+ + ....++.+|
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~~ 335 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVLY 335 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHHH
Confidence 3445555555555443 33 2223334444554432 445566666666654322 2 222333333
Q ss_pred Hhc---CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 000951 817 CEA---GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK----RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRV 889 (1211)
Q Consensus 817 ~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 889 (1211)
... .++..|.++|..+.+.|. ...+..++..|. ..-+..+|..+|+++.+.| .|...........+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 322 245566666666665442 222223333222 2235566777777776655 2222111222222223
Q ss_pred CChhhHHHHHHHHHHcCCCCchHHHHHHHHHH-----Hh--cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh---
Q 000951 890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGL-----AH--CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE--- 959 (1211)
Q Consensus 890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~--~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~--- 959 (1211)
+.++.+.-.+..+.+.+.+.....-..+.+.. .. ..+.+.+...+.++...+ +......|+..|...
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~ 487 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGT 487 (552)
T ss_pred ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCC
Confidence 66666666666665554322211111111111 11 234667777777766654 666777777777654
Q ss_pred -CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhC-C--ChhHHHHHHHHHHH
Q 000951 960 -AKFVDALKLKGTMELSGVKLDVVSYNVLISGLCAN-G--DVMPAFELYEEMKH 1009 (1211)
Q Consensus 960 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~ 1009 (1211)
.+++.|...|......+ ......++..+... | .+..|.+.+....+
T Consensus 488 ~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 488 GRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred CCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 34777777766544432 44555556554322 1 14666666665544
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.32 Score=45.26 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..+..-+....+.|+|++|.+.|+.+... .|. ...+-..++.+|.+.|++++|+..+++.+++.|.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33444455555667777777777766543 121 2334556667777777777777777777776654
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.59 E-value=7.6 Score=46.81 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhCCChHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHHH
Q 000951 611 LWEAIVLLDEMVQFNLLPDRYTYTILLAG-----LCRKGKVVSALLFFEKVVS-------KRTFSPNNVMFTCLVDGLFK 678 (1211)
Q Consensus 611 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~ 678 (1211)
...|.+.++...+.| +...-..+... +....+.+.|+.+|+.+.+ .+ .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhc
Confidence 344555555555544 22322222222 2334566666666666655 22 22233445555544
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----c
Q 000951 679 AG-----QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR-MGNMMMANDLLSTMRSRKLCPSLATYNILLHGYS----K 748 (1211)
Q Consensus 679 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~ 748 (1211)
.. +.+.|..++....+.| .|+....-..+..... ..+...|..+|......|. ..++..+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 32 4556666666666655 2333222211111111 1345566666666665542 223333333222 2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951 749 KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL 828 (1211)
Q Consensus 749 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 828 (1211)
..+.+.|..+|+++.+.| .|....-...+..+.. +.++.+.-.+..+...+.+... +-... +...+.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q-~~a~~---l~~~~~------- 443 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQ-SNAAY---LLDQSE------- 443 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHh-hHHHH---HHHhcc-------
Confidence 345666777777766655 2221111112222322 5555555555555443322110 00000 000000
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CChhhHHHHHHHHHH
Q 000951 829 FNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRV----GNFQGAFKLKDEMEA 904 (1211)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~eA~~~~~~~~~ 904 (1211)
..+.++. ...+.+.+...+.+....| +......+++.|... .+++.|...|..+..
T Consensus 444 ------~~~~~~~-----------~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~ 503 (552)
T KOG1550|consen 444 ------EDLFSRG-----------VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE 503 (552)
T ss_pred ------ccccccc-----------cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH
Confidence 0000000 0112333444444433322 334445555555433 246677777777765
Q ss_pred cCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCc
Q 000951 905 LGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 905 ~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~ 942 (1211)
.+ ......++.++.. .. +..|.++|+++.+.+.
T Consensus 504 ~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 504 QG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred hh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCc
Confidence 54 4444555555532 23 6788888888887653
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.56 E-value=1.2 Score=43.87 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=99.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 000951 713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVG 790 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A 790 (1211)
..|-+.-|+.=|.+.. .+.|+ +..+|.|+--+...|+++.|.+.|+...+ +.|. ..+...-+.++.-.|++.-|
T Consensus 77 SlGL~~LAR~DftQaL--ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhh--hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 3455555555566655 35664 67788888888888888888888888887 5552 23333344455567888888
Q ss_pred HHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCcHHHHHHHH-HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHH
Q 000951 791 FKFLKKMIAEGTMVDC--FTFNVLMRKCCEAGEMGKAFDLF-NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGM 867 (1211)
Q Consensus 791 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 867 (1211)
.+-+.+--.... .|+ ..|-.+. ...-+..+|..-+ ++... .|..-|..-+-.|. .|+..+ ..+++++
T Consensus 153 q~d~~~fYQ~D~-~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDP-NDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERL 222 (297)
T ss_pred HHHHHHHHhcCC-CChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHH
Confidence 877777666432 222 2222222 2223455665433 34332 33334433333222 122221 2233333
Q ss_pred HHcCCCCC------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 868 AEKGLTPK------CTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 868 ~~~g~~p~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
.....+.. .++|..|+.-+...|+.++|..+|+-++..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33111110 167777888888888888888888877644
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.22 Score=51.56 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=55.1
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcC
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK----CTQYITLINGMCRVGNFQGAFKLKDEMEAL-G-ISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g 925 (1211)
.+.|++.+|...|..-++ .-|+ ..++..|+.++..+|++++|...|..+.+. + .+.-+..+..++....+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 345566666666666666 2232 255666777777777777777777776532 1 1223456666677777777
Q ss_pred CHHHHHHHHHHHHhCCcc
Q 000951 926 KVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~ 943 (1211)
+.++|...|+++++.-|.
T Consensus 230 ~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 230 NTDEACATLQQVIKRYPG 247 (262)
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 777777777777665433
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.15 Score=52.75 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=62.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHH-hcCCCCch-HHHHHHHHHHHh
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTME-LSGVKLDV-VSYNVLISGLCA 993 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~-~~~~~l~~~~~~ 993 (1211)
+.-+...|++.+|...|...++..|.. .+.++..||.++..+|++++|..+|..+. ..+-.|.. .++.-|+.+...
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 334556677777777777777765442 34566777778888888888777766544 33333332 467777777777
Q ss_pred CCChhHHHHHHHHHHHc
Q 000951 994 NGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 994 ~g~~~~a~~~~~~~~~~ 1010 (1211)
.|+.++|-..++++.++
T Consensus 228 l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 LGNTDEACATLQQVIKR 244 (262)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 77888887777777654
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2.4 Score=42.60 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 781 FCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
|.+.++.++|...++.+++ +|...|++..|-...
T Consensus 83 cykk~~~~eAv~cL~~aie---------------Iyt~~Grf~~aAk~~ 116 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIE---------------IYTDMGRFTMAAKHH 116 (288)
T ss_pred HhhccChHHHHHHHHHHHH---------------HHHhhhHHHHHHhhh
Confidence 3455566666666665544 455666665554443
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.43 E-value=2.3 Score=47.09 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG 820 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 820 (1211)
.++|+..|.+.-+ ..|+...-.+++..+...|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcC
Confidence 4555556655555 2344433333333333333
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.31 E-value=0.064 Score=55.96 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG 890 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 890 (1211)
++-|.++|.|++|++.|.+... +.| +++++.+-+.+|.+..++..|+.-...++. ++-. ..+|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555443 223 455555555555555555555555555443 2211 133444444444444
Q ss_pred ChhhHHHHHHHHHH
Q 000951 891 NFQGAFKLKDEMEA 904 (1211)
Q Consensus 891 ~~~eA~~~~~~~~~ 904 (1211)
..+||.+-++.+++
T Consensus 180 ~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA 193 (536)
T ss_pred hHHHHHHhHHHHHh
Confidence 55555555555444
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=1.3 Score=46.38 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=89.9
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE 928 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 928 (1211)
.....|++.+|...|+.+++ ..|+. ..-..++.+|...|+.++|..++..+...-..........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567888888888888887 66643 6677888888889999988888887742211111111122234444444444
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHhCCChhH-HHHHHHH
Q 000951 929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV-KLDVVSYNVLISGLCANGDVMP-AFELYEE 1006 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 1006 (1211)
+..++-++. ..+|. |...-..|+..+...|+.++|.+.+-.+..... .-|...-..++..+..-|.-|. +.+.+++
T Consensus 221 ~~~~l~~~~-aadPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 221 EIQDLQRRL-AADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CHHHHHHHH-HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 444433322 23333 667777777777777888887775433332211 2244566667776666664444 3344444
Q ss_pred H
Q 000951 1007 M 1007 (1211)
Q Consensus 1007 ~ 1007 (1211)
+
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
No 253
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.28 E-value=0.15 Score=49.28 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSS-----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE 959 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~ 959 (1211)
-++..|++++|..-|..+++. .++. ...|..-+.++.+.+.++.|++-..++++++|. ...++..-+.+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 344455555555555555443 1221 112333344555555555555555555555543 344444445555555
Q ss_pred CCHHHHHHHHHHHHhc
Q 000951 960 AKFVDALKLKGTMELS 975 (1211)
Q Consensus 960 g~~~~A~~~~~~~~~~ 975 (1211)
.++++|++-|+.+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555544443
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.28 E-value=3.6 Score=51.22 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHHH
Q 000951 884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAE---SAMVRGLAHCGKVEEAMLVLNRM 937 (1211)
Q Consensus 884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~eA~~~~~~~ 937 (1211)
.+|..+|+|.+|+.+-.++. .+-.... ..|+.-+...++.-+|-++....
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34444555555555544432 1111111 33444445555555555554433
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.27 E-value=0.88 Score=43.85 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCCchH
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEME-----ALGISSSDV 912 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~-----~~~~~~~~~ 912 (1211)
..++..+...|++++|+.+++.++. .+|. ...|..++.++...|+..+|.+.|+++. +.|++|++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3445555566666666666666666 6663 3566666666666666666666666653 235555544
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.19 E-value=8.2 Score=44.73 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
..+|..-+.--...|.++....+|+..+- |- ...|...+.-....|+.+-|-..+.+..+...+..+.+--.-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli----~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI----PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh----HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 55677667666778888888888888764 21 144555555555668888888888777765444444444333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH---HHHHHHHhcCCCCchH--HHHHHHH-HH
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL---KLKGTMELSGVKLDVV--SYNVLIS-GL 991 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~-~~ 991 (1211)
+......|++..|..+++++.+.-|. ...+-..-+....+.|+.+.+. .++.........+... .+..... .+
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 44455678899999999988775422 3333344455667788888887 4544443332223211 2233333 45
Q ss_pred HhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951 992 CANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus 992 ~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
.-.++.+.|..++.++.+ ..|+. .-|.++++-....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 567888888888888865 34544 67777776654443
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.43 Score=50.05 Aligned_cols=153 Identities=10% Similarity=-0.045 Sum_probs=83.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCcHH
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNV----LMRKCCEAGEMG 823 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~ 823 (1211)
..|+..+|...++++++. .+.|..++...-.+|...|+.+.-...+++++.. ..+|...|.. +.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345566666666666652 3335556655556666666666666666666553 2233222222 222445667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHH
Q 000951 824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
+|.+.-++..+.+ +-|..+--+...++...|++.|+.+...+-.+.=.... ...|--.+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777777666543 23455555666666677777777666554321000000 0123333334445577888888887
Q ss_pred HHH
Q 000951 901 EME 903 (1211)
Q Consensus 901 ~~~ 903 (1211)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 764
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.06 E-value=0.77 Score=53.83 Aligned_cols=117 Identities=16% Similarity=0.030 Sum_probs=82.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc---cCHHHHHHHHHHhhhhCCHHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV---PTIATFTTLIHKFCKEAKFVDA 965 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p~~~~~~~L~~~~~~~g~~~~A 965 (1211)
....+.|.++++.+.+. .|........-+..+...|+.++|++.|+++++.... .....+..+++.+.-.++|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 45677888888888765 3444444455577888889999999999987752211 1456778899999999999999
Q ss_pred HHHHHHHHhcCCCCchHHH-HHHHHHHHhCCCh-------hHHHHHHHHH
Q 000951 966 LKLKGTMELSGVKLDVVSY-NVLISGLCANGDV-------MPAFELYEEM 1007 (1211)
Q Consensus 966 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~a~~~~~~~ 1007 (1211)
...|..+....-. ....| +..+.+|...|+. ++|.++++++
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9998887765211 22334 5555577888888 7777777765
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=11 Score=45.37 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=23.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 000951 707 VMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSM 757 (1211)
Q Consensus 707 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 757 (1211)
++..+.+..+.+.+..+.+..-+. ++..|..++..+.+.+..+.-.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence 334444555555555555544322 45555555555555554443333
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.96 E-value=7.5 Score=43.02 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951 668 MFTCLVDGLFKAGQSKAAMHISKIMDKEG-VYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY 746 (1211)
Q Consensus 668 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 746 (1211)
+|..++....+..-++.|..+|-++.+.| ..++..++++.+.-++ .|+...|..+|+.-... ++.+...-+..+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 34444444444444555555555554444 3344444555554333 34445555555543321 111222223334444
Q ss_pred HccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 747 SKKKDLLMCSMLLNTMKMEGLLPD--KLTCHSLILGFCETGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 799 (1211)
..-++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++..
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4445555555555543332 1112 23444444444444555555555444444
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.91 E-value=4.9 Score=50.13 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=99.7
Q ss_pred cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 000951 819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKL 898 (1211)
Q Consensus 819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~ 898 (1211)
.++|+.|+..+.++- ...|.-..+.-.++|.+++|+.+|.--.+ --...|..-++-+...+.+++|.-+
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHH
Confidence 357777777665542 22344445555678888888877643222 0114455556666678888888888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHH--HHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951 899 KDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIAT--FTTLIHKFCKEAKFVDALKLKGTMELSG 976 (1211)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~--~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 976 (1211)
|+..-+. .....+|..+|+|.+|+.+..++.. .-+... -..|..-+..+|+.-+|-++.... .
T Consensus 962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~---~ 1026 (1265)
T KOG1920|consen 962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEY---L 1026 (1265)
T ss_pred HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH---h
Confidence 8877321 1134567888999999998665432 223322 367888888999988888874332 2
Q ss_pred CCCchHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 977 VKLDVVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 977 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
.+|. -....|+.+..|++|.++-...
T Consensus 1027 sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1027 SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 2342 3344566777899998876544
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.75 E-value=0.56 Score=43.71 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH----H
Q 000951 910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV----S 983 (1211)
Q Consensus 910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~ 983 (1211)
.+..+..-+....+.|++++|.+.|+.+...-|-+ ...+...|+.+|.+.|++++|...++....+ .|++. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHH
Confidence 34455566777788999999999999988764432 5678888999999999999999999887766 66432 4
Q ss_pred HHHHHHHHHhC
Q 000951 984 YNVLISGLCAN 994 (1211)
Q Consensus 984 ~~~l~~~~~~~ 994 (1211)
++..+-++...
T Consensus 87 ~Y~~gL~~~~~ 97 (142)
T PF13512_consen 87 YYMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.74 E-value=11 Score=43.82 Aligned_cols=116 Identities=10% Similarity=0.087 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHHHHHHH
Q 000951 505 KVCEAEDYVGHMKRIGVVPNSI-TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLC-KGGNLKEAKRF 582 (1211)
Q Consensus 505 ~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~ 582 (1211)
..+.+..+++.++.. .|... -|......=.+.|..+.+.++|++-+. +++.+...+.....-++ ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 334445555555532 34332 344444444566677777777777665 34555555555544333 34555566666
Q ss_pred HHHhhhC-CCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951 583 LNSLHHI-PSA-VDTVAYNTILAETCKSGNLWEAIVLLDEMVQ 623 (1211)
Q Consensus 583 ~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 623 (1211)
|+.+... |.. .....|...|..-..++++.....+|++.++
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6665542 221 1344566666666667777777777777775
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=3.4 Score=43.49 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=99.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH---HHHHhhhh
Q 000951 883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT---LIHKFCKE 959 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~---L~~~~~~~ 959 (1211)
+......|++.+|...|+.+.... +.+..+-..++.+|...|+.++|..++..+-... ....|.. -+..+.+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHH
Confidence 445567899999999999998763 4556777788999999999999999988743321 2222222 23344455
Q ss_pred CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCc-cChhhHHHHHHHHHhcccchHHHH
Q 000951 960 AKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLC-PNSTTYSVLIDAISKKENNLVKGE 1037 (1211)
Q Consensus 960 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~~a~ 1037 (1211)
....+...+-+... .+| |...-..++..|...|+.+.|.+.+-.+..+... .+......++..+.-.|..+..+.
T Consensus 217 a~~~~~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 217 AATPEIQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred hcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 55554444422222 278 4557788999999999999999887665543222 233555555555555565555455
Q ss_pred HHHHHH
Q 000951 1038 ILLKDI 1043 (1211)
Q Consensus 1038 ~~~~~l 1043 (1211)
.+.+.|
T Consensus 294 ~~RRkL 299 (304)
T COG3118 294 AYRRKL 299 (304)
T ss_pred HHHHHH
Confidence 444444
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.48 E-value=0.98 Score=52.96 Aligned_cols=82 Identities=11% Similarity=-0.067 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchhhHHHHHHHHHHcC--CC-CChhHHHHHHHHHHhcCChhhHH
Q 000951 821 EMGKAFDLFNIMNMLGVVPDTNTQ-DAIIMGLKRIAAFQESHFVLRGMAEKG--LT-PKCTQYITLINGMCRVGNFQGAF 896 (1211)
Q Consensus 821 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~~~g--~~-p~~~~~~~l~~~~~~~g~~~eA~ 896 (1211)
..+.|.++++.+.+. -|+...| ..-+..+...|+.++|+..|+++.... .. .....+..++..+.-+.+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444555555555442 2333222 222334445555555555555444200 00 01233445555555556666666
Q ss_pred HHHHHHHH
Q 000951 897 KLKDEMEA 904 (1211)
Q Consensus 897 ~~~~~~~~ 904 (1211)
+.|.++.+
T Consensus 326 ~~f~~L~~ 333 (468)
T PF10300_consen 326 EYFLRLLK 333 (468)
T ss_pred HHHHHHHh
Confidence 66666554
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.42 E-value=7.2 Score=40.39 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=29.0
Q ss_pred hcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951 713 RMGNMMMANDLLSTMRSRKL-CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKM 764 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 764 (1211)
+.|++++|...|+.+..+.+ .| ...+...++.++.+.+++++|+...++.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45666666666666664311 11 344445555566666666666666666555
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=15 Score=43.73 Aligned_cols=342 Identities=16% Similarity=0.140 Sum_probs=172.3
Q ss_pred HhCCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC
Q 000951 237 ASKGIEADVCTYNM-----FIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKI--QVASRVFDEMSML 309 (1211)
Q Consensus 237 ~~~g~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~ 309 (1211)
..-|++.+..-|.. +|+-+...+.+..|+++-..+...-..- ..+|.....-+.+..+. +++.+..++=.+.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34567766666654 4677788889999999888775432222 56777777777666322 2233333322222
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 000951 310 NFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGL----RPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISC 385 (1211)
Q Consensus 310 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~ 385 (1211)
-. .+-++|.....--...|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...+++-.+...- +.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH
Confidence 12 3456788887777789999999888764221110 0011223444555556666666666555554431 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HH-H----HCCCCCCHHHHH
Q 000951 386 IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLC-KM-Y----RDGLVPNKIIYS 459 (1211)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m-~----~~g~~p~~~~~~ 459 (1211)
..+.. ...+...|..+|.+..+.. |.. .+-+.| ++++..++..-|. +- . ..|..|+..
T Consensus 579 s~l~~------~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk--- 642 (829)
T KOG2280|consen 579 SSLFM------TLRNQPLALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK--- 642 (829)
T ss_pred HHHHH------HHHhchhhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---
Confidence 11111 1123445666666655421 111 111222 2333222222221 10 0 112333332
Q ss_pred HHHHHHHHcCCHHHHHH----------HHHHHHH-cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHH
Q 000951 460 TLIYYFCKMGKVTEAMK----------VYAVMNR-NAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITF 528 (1211)
Q Consensus 460 ~li~~~~~~g~~~~A~~----------~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 528 (1211)
.....+.+.....-..+ +.+.+.. .+......+.+--+.-+...|+..+|.++-.+.. -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 23344444333111111 1111111 1111122233334445556677777777666655 4666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHc
Q 000951 529 DCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKS 608 (1211)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 608 (1211)
-.-+.++...+++++-.++-+.+. ++.-|...+..|.+.|+.++|.+.+.+.... ...+.+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence 666777777777766555444332 1344555667777777777777766554211 1456667777
Q ss_pred CCHHHHHHHH
Q 000951 609 GNLWEAIVLL 618 (1211)
Q Consensus 609 g~~~~A~~~~ 618 (1211)
|++.+|.++-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 7777776653
No 268
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.28 E-value=19 Score=48.77 Aligned_cols=315 Identities=9% Similarity=0.007 Sum_probs=170.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 000951 600 TILAETCKSGNLWEAIVLLDEM----VQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDG 675 (1211)
Q Consensus 600 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 675 (1211)
.+..+-.+++.+..|+-.+++- .+.+ ....-+-.+...|..-++++...-+...-.. .|+ ....+-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence 4555667888899998888873 2211 1122244444478888888776655543111 222 2334455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCChHH
Q 000951 676 LFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILL-HGYSKKKDLLM 754 (1211)
Q Consensus 676 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~ 754 (1211)
....|+|..|...|+.+.+.+ ++...+++.++......|.++......+..... ..+....|+.+. .+-.+.++|+.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 677899999999999998763 223556666666556677888777766665542 334455555554 34466677776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChHH-H-HHHHHHHHHc--------CCCC-CHhhHHHHHHHHHhcCc
Q 000951 755 CSMLLNTMKMEGLLPDKLTCHS--LILGFCETGMLEV-G-FKFLKKMIAE--------GTMV-DCFTFNVLMRKCCEAGE 821 (1211)
Q Consensus 755 A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~-A-~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~ 821 (1211)
...... .. +..+|.. ++.......+-|. + .+..+.+.+. +... -...|..++....-+ +
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-e 1608 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-E 1608 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-H
Confidence 555443 11 1112221 2222222111111 0 0111111111 0000 012233333322211 1
Q ss_pred HHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHhhcchhhHHHHHHHHH-HcCCCCC-----hhHHHHHHHHHHhc
Q 000951 822 MGKAFDLFNIMNMLGVVPD------TNTQDAIIMGLKRIAAFQESHFVLRGMA-EKGLTPK-----CTQYITLINGMCRV 889 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~g~~p~-----~~~~~~l~~~~~~~ 889 (1211)
.+.-.+... ++.++ ..-|-+-...-....+..|-+-.+++.. ....+|+ ...|...+......
T Consensus 1609 l~~~~~~l~-----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1609 LENSIEELK-----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred HHHHHHHhh-----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 111111111 12222 2334444433333334455555555543 2223333 27899999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
|+++.|....-.+.+.+ -+.++-..+..+...|+-..|+.++++.++..
T Consensus 1684 G~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999999988887654 35566677888999999999999999999754
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=5.4 Score=38.17 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 985 NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 985 ~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
..|+-+-.++|++..|.+.|+.+..
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444455555555555555544
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.20 E-value=1.7 Score=42.48 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred HHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 849 MGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 849 ~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
..+...|++++|+.-++..+....+.+. .+-..|+......|.+++|+..++.....+. .......-++++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3455666777777777666642211111 3333455666666777777666665543221 11112334666777777
Q ss_pred HHHHHHHHHHHHhCC
Q 000951 927 VEEAMLVLNRMLRMR 941 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~ 941 (1211)
.++|+..|+++++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777777665
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.07 E-value=2.8 Score=40.02 Aligned_cols=123 Identities=10% Similarity=0.055 Sum_probs=51.9
Q ss_pred HhcCcHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCh
Q 000951 817 CEAGEMGKAFDLFNIMNMLGVVPDT-NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC---TQYITLINGMCRVGNF 892 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~ 892 (1211)
.+.+..++|+..|..+.+.|...-+ .....++....+.|+-.+|+..|.++-.-.-.|.. ..-..-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3444555555555555543332211 11222233344555555555555555442222211 1111222333445555
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
++.....+-+..-+.+-...+-..|+-+-.+.|++.+|.+.|+++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55544444443222222222334444444555555555555555444
No 272
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.96 E-value=21 Score=43.94 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=23.9
Q ss_pred HhcCcHHHHHHHHHHHHHCCC-CCC-------hhhHHHHHHHHHhhcchhhHHHHHH
Q 000951 817 CEAGEMGKAFDLFNIMNMLGV-VPD-------TNTQDAIIMGLKRIAAFQESHFVLR 865 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~ 865 (1211)
+-.+++..|....+.+.+... .|+ +..+...+-.+...|+.+.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666543110 111 2222333333344566777777775
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.89 E-value=11 Score=40.77 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=43.1
Q ss_pred hCC-ChHHHHHHHHHHHHc----C---CCCCC-----HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCHHHHH
Q 000951 642 RKG-KVVSALLFFEKVVSK----R---TFSPN-----NVMFTCLVDGLFKAGQSKA---AMHISKIMDKEGVYPDTIAFN 705 (1211)
Q Consensus 642 ~~g-~~~~A~~~~~~~~~~----~---~~~p~-----~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~ 705 (1211)
+.+ ++++|...++++.+- + ...|+ ..++..++.+|...+..+. |.++.+.+... ....+.++.
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHH
Confidence 344 666666666555442 1 12222 2345556666666555443 34444444222 111233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 000951 706 AVMDGFSRMGNMMMANDLLSTMRSR 730 (1211)
Q Consensus 706 ~li~~~~~~g~~~~A~~~~~~~~~~ 730 (1211)
.-+..+.+.++.+++.+.+.+|...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Confidence 3344455566677777777777653
No 274
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.78 E-value=0.88 Score=43.98 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC-----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCC
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK-----------FVDALKLKGTMELSGVKLDVVSYNVLISGLCANG 995 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 995 (1211)
+++|+.=|++++..+|. ...++..+|.+|..++. +++|...|+..... +|++..|..-+...
T Consensus 51 iedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH----
Confidence 44555556666665554 55677777777766543 56666666666555 88888887666643
Q ss_pred ChhHHHHHHHHHHHcCCcc
Q 000951 996 DVMPAFELYEEMKHKGLCP 1014 (1211)
Q Consensus 996 ~~~~a~~~~~~~~~~g~~p 1014 (1211)
+.|-+++.+..+.+...
T Consensus 124 --~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp --HTHHHHHHHHHHSSS--
T ss_pred --HhhHHHHHHHHHHHhhh
Confidence 34556666665554443
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=21 Score=43.13 Aligned_cols=116 Identities=17% Similarity=0.097 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951 564 GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVD--TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLC 641 (1211)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 641 (1211)
..-++.+++...++-|..+-+.. +.+++ .......++.+.+.|++++|...|-+.+.. +.|.. ++.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhc
Confidence 34455566666666666554432 11111 223334444455666666666666555432 22222 223333
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951 642 RKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISK 690 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 690 (1211)
...++.+-..+++.+.+.| -.+...-+.|+.+|.+.++.++-.+..+
T Consensus 409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 4444444555555555555 2333344455566666666655544433
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.60 E-value=14 Score=41.98 Aligned_cols=63 Identities=24% Similarity=0.228 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.++..++.++.+.|+++.|...+.++...+... .+.+...-+..+...|+..+|+..++..++
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666666666665432111 233344445556666666666666666655
No 277
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.55 E-value=13 Score=40.84 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 859 ESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
.|..+|.++-..+ +......++..|.. ..++++|...|+++.+.|. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 5666666655544 33444555544432 2356677777777766553 44444444 444333
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.55 E-value=13 Score=40.32 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=60.0
Q ss_pred hCCChHHHHHHHHHHHHcC-CCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCCH-----
Q 000951 642 RKGKVVSALLFFEKVVSKR-TFSPNN-----VMFTCLVDGLFKAG-QSKAAMHISKIMDKE--------GVYPDT----- 701 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~~----- 701 (1211)
+.|+.+.|..++.++.... ...|+. ..+..++......+ +++.|..++++..+. ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3455555555555554322 123331 12223333444555 777777777666332 112222
Q ss_pred HHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951 702 IAFNAVMDGFSRMGNM---MMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 702 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
.+...++.+|...+.. ++|..+++.+... ....+..+..-+.++.+.++.+++.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3345556666665544 3444455555432 1112333434444555566677777777777654
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.53 E-value=0.12 Score=37.56 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
|..++..|.+.|++++|+.+|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.18 E-value=12 Score=42.30 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
+..+++.+.|+++.+..+. ...+|..++.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~-~~k~~~~~a~ 300 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPS-WEKAWHSWAL 300 (352)
T ss_pred ccHHHHHHHHHHHHHhChh-HHHHHHHHHH
Confidence 4445555555555554433 3344444444
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.14 E-value=1.1 Score=51.72 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951 667 VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGY 746 (1211)
Q Consensus 667 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 746 (1211)
.....++..+.+.|.++.|+++.. |+. .-.+...+.|+++.|.++.++. ++...|..|+...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 345666777777787777776532 222 2234455778888887654332 3677888888888
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951 747 SKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF 826 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 826 (1211)
..+|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.+...| -++.-..++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence 888888888888877654 3456666777788777777766666543 2344444555667777777
Q ss_pred HHHHH
Q 000951 827 DLFNI 831 (1211)
Q Consensus 827 ~~~~~ 831 (1211)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66644
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.86 E-value=0.87 Score=47.95 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=45.8
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE 928 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 928 (1211)
-|.++|+++||+..|...+. ..| +.+++..-+.+|.+.+++..|..-...++..+ ..-..+|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34555555555555555554 445 34555555555555555555555555444331 122234444455555555555
Q ss_pred HHHHHHHHHHhCCc
Q 000951 929 EAMLVLNRMLRMRL 942 (1211)
Q Consensus 929 eA~~~~~~~~~~~~ 942 (1211)
||.+-++.++++.|
T Consensus 183 EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 183 EAKKDCETVLALEP 196 (536)
T ss_pred HHHHhHHHHHhhCc
Confidence 55555555555443
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.59 E-value=19 Score=39.52 Aligned_cols=98 Identities=12% Similarity=-0.043 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-------ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----c
Q 000951 856 AFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-------NFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----C 924 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-------~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 924 (1211)
+..+|..+|+++.+.|..+...+...++..|..-+ +...|...|.++...+ ++.+...++..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 44555555555555443332222333333333221 2236777777776554 44455555555533 2
Q ss_pred CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
.+..+|...|+++.+.+. ......++ .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 357777777777777663 44444455 444444
No 284
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.54 E-value=2.1 Score=39.59 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHhHHHHHHHHHH
Q 000951 311 FSPNSITYNELIDGHCCKGNFKEAFRLLAMMEE-MGLRPNEVSYGALLNGFC 361 (1211)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~ 361 (1211)
..|+..+..+++.+|+.+|++..|+++.+...+ .+++.+..+|..|++.+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666666666666666666666666665543 345555566666665543
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.47 E-value=33 Score=42.12 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=116.0
Q ss_pred hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHH
Q 000951 33 RLALKFLNWVMNQPGLELKHLTHILCLTTHVLV-KTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLL 111 (1211)
Q Consensus 33 ~~al~~f~w~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 111 (1211)
..|++-+.-+.++..++|.....++--++.+|. ....++.|+..+.+.+...-. +.+++ + .-.+-..+
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d-~---------k~~~~~ll 106 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTD-L---------KFRCQFLL 106 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHH-H---------HHHHHHHH
Confidence 357888888888777777666777777788877 678899999999876542211 11110 0 01233456
Q ss_pred HHHHHHcCChhHHHHHHHHHhhC----CCCCCHHHHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 000951 112 IRVYLREGMVEYALETFQLMGFR----GFNPSVYTCNMM-LSFMLKDRRVDSVWLLFDDMLDRK---ICPNVATFNILIN 183 (1211)
Q Consensus 112 ~~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~~~l-l~~l~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~ 183 (1211)
++.|.+.+... |...+++..+. +..+-...|..+ +..+...+++..|.+.++.+...- ..|-..++..++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 78888777665 88888876532 222223334443 222333478888999998875422 2344555555555
Q ss_pred HHH--hcCChhHHHHHHHHHHHcCC---------CCCHhHHHHHHHHHH--HcCChHHHHHHHHHH
Q 000951 184 VSC--VEGKLKKAGYLLRKMEESGY---------VPNIVTYNTLLNWYC--KKGRYKAAFKLIDCM 236 (1211)
Q Consensus 184 ~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m 236 (1211)
+.. +.+..+++.+.+.++..... .|...+|..++..++ ..|+++.+...+.++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 45666777777777643211 235556767765555 467766666655554
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.40 E-value=5.4 Score=39.20 Aligned_cols=91 Identities=18% Similarity=0.093 Sum_probs=60.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccC--HHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHH
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPT--IATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV--SYNVLISGLC 992 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~--~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~ 992 (1211)
++..+...|++++|+..++.++......+ ..+-..|+.+....|.+++|+..+...+ +++-. ....-++++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~----~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK----EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccHHHHHHHHhhhHHH
Confidence 35566777888888888887775432212 2334557777888888888888766443 22222 2355666888
Q ss_pred hCCChhHHHHHHHHHHHcC
Q 000951 993 ANGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus 993 ~~g~~~~a~~~~~~~~~~g 1011 (1211)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8888888888888877755
No 287
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.36 E-value=1.2 Score=41.08 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951 210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLING 289 (1211)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 289 (1211)
..++.++|.++++.|+++....+.+..-. +.++... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 44566677777777777766666655432 2211100 0000 01123456888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhC-CCCCChHHHHHHHHHH
Q 000951 290 FVKEGKIQVASRVFDEMSML-NFSPNSITYNELIDGH 325 (1211)
Q Consensus 290 ~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~ 325 (1211)
|+..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888876554 5555677787777543
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.31 E-value=0.26 Score=33.27 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
+|..++.++...|++++|++.|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45555555555555555555555555544
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.20 E-value=0.74 Score=48.62 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=35.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHHH
Q 000951 110 LLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLD-----RKICPNVATFNILINV 184 (1211)
Q Consensus 110 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~ 184 (1211)
.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+++.+ .|+.|...+...+...
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 34444444455555555554444333 33444455555555555555555555544432 4555555555554444
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.99 E-value=0.14 Score=34.53 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHH
Q 000951 865 RGMAEKGLTPKC-TQYITLINGMCRVGNFQGAF 896 (1211)
Q Consensus 865 ~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~ 896 (1211)
+++++ ++|+. .+|..++.+|...|++++|.
T Consensus 3 ~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444 44532 45555555555555555543
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.80 E-value=0.34 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
++..++.++...|++++|++.|+++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34445555555555555555555555543
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.68 E-value=26 Score=39.09 Aligned_cols=79 Identities=5% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 000951 137 NPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTL 216 (1211)
Q Consensus 137 ~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 216 (1211)
+.+..+|-.|+.-|...+.++...+++++|..- ++--..+|...+.+-....++...+.+|.+-.... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 456677777777777777777777777777532 44445566666666666666777777777666542 234445444
Q ss_pred HH
Q 000951 217 LN 218 (1211)
Q Consensus 217 i~ 218 (1211)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 43
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.65 E-value=0.29 Score=32.98 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
+|..++..|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555544
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.49 E-value=0.19 Score=34.53 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 000951 915 SAMVRGLAHCGKVEEAMLVLNR 936 (1211)
Q Consensus 915 ~~l~~~~~~~g~~~eA~~~~~~ 936 (1211)
..|+.+|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
No 295
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=1.7 Score=43.70 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
....++..|+..|.+++..+|. .+..|.+-+.++.+..+|+.+..--+...+ +.|+.. ..+.++........+++|
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3344455666666666554433 334445555555555666665554332222 255544 445555555555566666
Q ss_pred HHHHHHH
Q 000951 1001 FELYEEM 1007 (1211)
Q Consensus 1001 ~~~~~~~ 1007 (1211)
+.++.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 6555554
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.49 E-value=3.5 Score=47.60 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951 774 CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853 (1211)
Q Consensus 774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (1211)
.+.++.-+.+.|..+.|+++.+. +. .--+...++|+++.|.++.++ .++...|..|+....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 44455555666766666665322 11 122334566777777665432 2356677777777777
Q ss_pred hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 854 IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
+|+++-|++.|++.-+ +..|.-.|.-.|+.+.-.++-+.+...
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7777777777777554 556666666677765555555555444
No 297
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.38 E-value=8.6 Score=36.56 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcC
Q 000951 285 TLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHA 364 (1211)
Q Consensus 285 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 364 (1211)
.+|..+.+.+........++.+...+ ..+...+|.+|..|++.+ ..+.++.+.. .++.+....+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444555555555555555544 244445555555555432 2233333321 122333344555555555
Q ss_pred ChHHHHHHHHH
Q 000951 365 KFDLARSLLER 375 (1211)
Q Consensus 365 ~~~~a~~l~~~ 375 (1211)
.++++.-++.+
T Consensus 84 l~~~~~~l~~k 94 (140)
T smart00299 84 LYEEAVELYKK 94 (140)
T ss_pred cHHHHHHHHHh
Confidence 55555554443
No 298
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.34 E-value=9.6 Score=36.25 Aligned_cols=40 Identities=5% Similarity=0.126 Sum_probs=17.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 000951 216 LLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLC 256 (1211)
Q Consensus 216 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 256 (1211)
++..+...+.......+++.+...+ ..+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3444444444444444444444433 133334444444444
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.99 E-value=47 Score=40.81 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=117.4
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCCC-------hhhHHHHHHH-HHhhcchhhHHHHHHHHHHcC----CCCChhHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVPD-------TNTQDAIIMG-LKRIAAFQESHFVLRGMAEKG----LTPKCTQYITL 882 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~g----~~p~~~~~~~l 882 (1211)
......++++|..+..++...-..|+ ...|+.+-.. ....|++++|..+.+..+..= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34455677777777776643211222 2244444432 235677888888888877611 11233667778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCchHH---HHHH--HHHHHhcCC--HHHHHHHHHHHHhCC--ccc-C---HHHH
Q 000951 883 INGMCRVGNFQGAFKLKDEMEALGISSSDVA---ESAM--VRGLAHCGK--VEEAMLVLNRMLRMR--LVP-T---IATF 949 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~--~~eA~~~~~~~~~~~--~~p-~---~~~~ 949 (1211)
+.+..-.|++++|..+...+.+..-.-+... |..+ ..++..+|+ +++....|...-+.. -.| . ..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888888999999988888765422223332 2222 445667774 444444444443321 111 1 1233
Q ss_pred HHHHHHhhhhCCHHHHHHH----HHHHHhcCCCC-chH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh----hhH
Q 000951 950 TTLIHKFCKEAKFVDALKL----KGTMELSGVKL-DVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS----TTY 1019 (1211)
Q Consensus 950 ~~L~~~~~~~g~~~~A~~~----~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~ 1019 (1211)
..+.+++.+ ++++..- ++.-......| +.. .+..|+..+...|+.++|.....++......+.+ ...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 334444333 4444332 22111221112 222 2347788888999999998888777654333322 333
Q ss_pred HHHHHHH--HhcccchHHHHHHHH
Q 000951 1020 SVLIDAI--SKKENNLVKGEILLK 1041 (1211)
Q Consensus 1020 ~~l~~~~--~~~~~~~~~a~~~~~ 1041 (1211)
++.++.. ...|+..+++..+++
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 3444433 334666664444444
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.82 E-value=0.47 Score=31.88 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
..|..+|.++...|++++|++.|+..... .|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 46777888888888888888887766655 554
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=43 Score=40.10 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 000951 533 DGYGTLGDGLKAFSMFDEMV--------KLGHHPSIFTY-----GSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYN 599 (1211)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 599 (1211)
.++.+.-++++-+.+.+++. .-|++.+..-| ..+++-+...+.+..|.++-..+...... ...+|.
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~ 475 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL 475 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence 33445555555554444332 23555444333 34566667778888888876665332222 246677
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 000951 600 TILAETCKSGN--LWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFE 654 (1211)
Q Consensus 600 ~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 654 (1211)
.....+.+..+ -+++++..++=+.... -+..+|..+..--...|+.+-|..+++
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 77777776532 2223333332222112 245567777777778899998887765
No 302
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.56 E-value=13 Score=33.87 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 000951 390 SVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGL 451 (1211)
Q Consensus 390 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 451 (1211)
.-++.+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455556666666666666655422 45555556666666666666666666666666653
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.54 E-value=23 Score=36.49 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=15.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH
Q 000951 740 NILLHGYSKKKDLLMCSMLLNTMKM 764 (1211)
Q Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~~~ 764 (1211)
..|+..|...+++.+-.++++++.+
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666654
No 304
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.21 E-value=2 Score=44.24 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHH-----HcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 000951 104 NPSVFDLLIRVYL-----REGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATF 178 (1211)
Q Consensus 104 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 178 (1211)
+...|...+..+. +.+.++-.-..+..|.+.|+..|..+|+.||+++-|..-... .+|+..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------------ 131 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------------ 131 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------------
Confidence 3344444444443 235666677778889999999999999999988865443211 111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC
Q 000951 179 NILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGR 225 (1211)
Q Consensus 179 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 225 (1211)
.++ |- .+-+-+..++++|...|+-||..+-..+++.+.+.|-
T Consensus 132 --F~H-YP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 --FLH-YP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred --Hhh-Cc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111 11 1234577888899888999998888888888877664
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.04 E-value=0.56 Score=32.17 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+|..|+.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888865
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.81 E-value=2.3 Score=41.18 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 000951 857 FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG 890 (1211)
Q Consensus 857 ~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 890 (1211)
+++|+.-|++++. ++|+. .++..+++++...+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 4566667777777 88874 78888888877554
No 307
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.75 E-value=12 Score=42.09 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=13.3
Q ss_pred hhhcCcchhhhhHHHHhhccc
Q 000951 1140 EKLFCPCCLLHYLLKLIYQGS 1160 (1211)
Q Consensus 1140 ~~~~~~~~~~~~~~~~~~~~~ 1160 (1211)
-|.-|.|| --+-||+--+.
T Consensus 534 kLLq~~~l--S~~~kfLGHiY 552 (696)
T KOG2471|consen 534 KLLQLADL--SKIYKFLGHIY 552 (696)
T ss_pred HHHhhhhh--hhHHHHHHHHH
Confidence 47778888 77777766554
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.15 E-value=30 Score=35.73 Aligned_cols=119 Identities=7% Similarity=-0.044 Sum_probs=55.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcC
Q 000951 714 MGNMMMANDLLSTMRSRKLCPSLA---TYNILLHGYSKKKDLLMCSMLLNTMKME---GL--LPDKLTCHSLILGFCETG 785 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~--~p~~~~~~~l~~~~~~~g 785 (1211)
...+++|..-|+++.+..-..... +...++..+.+.|++++-++.|.+++-- .+ .-+.-+.++++.--..+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346677777777776542222222 2334455666667777666666666531 00 012223444444334444
Q ss_pred ChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951 786 MLEVGFKFLKKMIAE--GTMVD---CFTFNVLMRKCCEAGEMGKAFDLFNIM 832 (1211)
Q Consensus 786 ~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 832 (1211)
+.+.-..+|+..+.. ....+ ..+-..|+..|...|++.+-.++++++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 444444444443332 00101 122234455555555555555555444
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.96 E-value=16 Score=39.79 Aligned_cols=93 Identities=12% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCC---H
Q 000951 263 KGYLLLKNMRKRMI---TPNEVTYNTLINGFVKEGK----IQVASRVFDEMSMLNFSPN-SITYNELIDGHCCKGN---F 331 (1211)
Q Consensus 263 ~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~---~ 331 (1211)
.|..+|+.|++..+ .++..++..++.. ...+ .+.+..+|+.+.+.|+..+ ..-+.+-|-+++.... +
T Consensus 121 ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v 198 (297)
T PF13170_consen 121 RAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV 198 (297)
T ss_pred HHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence 34455555554432 2344455555433 2222 3456666777776666543 3234444434433221 4
Q ss_pred HHHHHHHHHHHHCCCCcCHhHHHHHH
Q 000951 332 KEAFRLLAMMEEMGLRPNEVSYGALL 357 (1211)
Q Consensus 332 ~~A~~~~~~m~~~g~~p~~~t~~~ll 357 (1211)
..+.++++.+.+.|+++....|..+.
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 46677777777777777666665543
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.85 E-value=4.3 Score=40.33 Aligned_cols=94 Identities=16% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------Hh
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL--TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-------CF 807 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 807 (1211)
..+..++..|.+.|+.++|++.|.++.+....|... .+..++......+++..+.....++...--... ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345556666666666666666666666654444322 334456666666777777766666554311111 11
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIM 832 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~ 832 (1211)
++..| .+...++|.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12222 233456777777666544
No 311
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.13 E-value=21 Score=32.72 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 000951 707 VMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGL 767 (1211)
Q Consensus 707 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 767 (1211)
.++.+.++|+-++-.++...+.+ +-.+++.....++.+|.+-|+..++-++++++-++|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555443 1233444555555555555555555555555555554
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.81 E-value=4.6 Score=40.13 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
..+..++.-|.+.|+.++|++.|.++.+....|.. ..+..++......++|..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666677777777777777777765555543 5566777777777777777777777753
No 313
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=87.60 E-value=3.4 Score=42.60 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 000951 439 AKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGK 470 (1211)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 470 (1211)
++.++++|...|+.||..+-..++.++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 45556666666666666666666666655443
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.56 E-value=4.2 Score=43.13 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 000951 703 AFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKM-----EGLLPDKLTCHS 776 (1211)
Q Consensus 703 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 776 (1211)
++..++..+..+|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4556677777788888888888888853 56 788888888888888888888888887765 366666555543
Q ss_pred H
Q 000951 777 L 777 (1211)
Q Consensus 777 l 777 (1211)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 315
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=7.9 Score=39.24 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHhcCcHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChh
Q 000951 816 CCEAGEMGKAFDLFNIMNMLGVVPDTN-TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQ 893 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~ 893 (1211)
|....+++.|+..|.+++. +.|... -|.+-+..+.+..+++.+..-.+++++ +.|+. .....++.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3333445555555544443 233332 223334444444555555554555444 44443 23334444444444445
Q ss_pred hHHHHHHHH
Q 000951 894 GAFKLKDEM 902 (1211)
Q Consensus 894 eA~~~~~~~ 902 (1211)
+|+..+.++
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555444444
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.92 E-value=21 Score=34.33 Aligned_cols=50 Identities=22% Similarity=0.095 Sum_probs=27.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951 713 RMGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKM 764 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 764 (1211)
+.++.+++..++..+.- +.|. ...-..-+..+...|+|.+|+.+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 45566666666666652 3442 22222233445566666666666666654
No 317
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.78 E-value=71 Score=36.49 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR 814 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 814 (1211)
|.....+++..+..+-++.-...+-.+|+. +..+...|..++..|... ..++-..+++++.+..+. |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 444444555555555555555555555555 223445555555555554 334445555555553221 2333333444
Q ss_pred HHHhcCcHHHHHHHHHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~ 834 (1211)
.|.+ ++.+.+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 4433 555555555555543
No 318
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.56 E-value=71 Score=36.25 Aligned_cols=108 Identities=12% Similarity=-0.006 Sum_probs=57.6
Q ss_pred HHHHHcCCHHHHHHHHHHH---HhCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCC---
Q 000951 674 DGLFKAGQSKAAMHISKIM---DKEGVYPDT-----IAFNAVMDGFSRMGNMMMANDLLSTMRS-------RKLCPS--- 735 (1211)
Q Consensus 674 ~~~~~~g~~~~A~~~~~~~---~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~--- 735 (1211)
..+.-.|++.+|.+.+... ...|....+ ..||.+.-...+.|.+.-+..+|.+... .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3445567777776655443 112211111 1235555555666777777777766653 243331
Q ss_pred -------HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000951 736 -------LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFC 782 (1211)
Q Consensus 736 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 782 (1211)
.......+-.|...|++-.|.+.|.+.... +..++..|..+..+|.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 111222344566677777777777776653 4446666666666554
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.47 E-value=13 Score=38.27 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChh-------hHHHHHHHHHHcCCCC-----chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 877 TQYITLINGMCRVGNFQ-------GAFKLKDEMEALGISS-----SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~-------eA~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
..+..++..|...|+.+ .|++.|.++.+....| ...+.+.+|.+..+.|++++|.+.|.+++..+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555566666666533 3444444443221111 12344455666666666666666666666543
No 320
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.33 E-value=4.4 Score=46.21 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=80.0
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK--CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEE 929 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 929 (1211)
...|+...|...+..++. ..|. .+....|++...+.|...+|-.++.+.+... ...+..+..++.++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 356888888888888776 5664 3677888888888888888998888888764 5556677788888888899999
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
|++.|+++++..++ ++.+-+.|..+-|
T Consensus 695 a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999888766 7777777766555
No 321
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.30 E-value=1 Score=47.92 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHH
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 1000 (1211)
...|.+++|++.|..+++.++. ....|..-+.++.+.+++..|+.-+.. +..++||.. .|-.-+.+....|.|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~--A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDF--AIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhh--hhccCcccccccchhhHHHHHhhchHHH
Confidence 3567788888888888888754 777777788888888888888887553 344577766 555555566777888888
Q ss_pred HHHHHHHHHcCCccChhhH
Q 000951 1001 FELYEEMKHKGLCPNSTTY 1019 (1211)
Q Consensus 1001 ~~~~~~~~~~g~~p~~~~~ 1019 (1211)
.+.+....+.+..+....|
T Consensus 202 a~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHhccccHHHHHH
Confidence 8888888777776665433
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.98 E-value=1.5 Score=29.41 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
+|..++.+|...|++++|.+.|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555555555555555554
No 323
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.79 E-value=1.1e+02 Score=36.88 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHH
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDE 901 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~ 901 (1211)
++..-|+-++|-.+.++++.. .+|-. .-...++.+|+..|+..--.+++.-
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d-kdpilR~~Gm~t~alAy~GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD-KDPILRYGGMYTLALAYVGTGNNKAIRRLLHV 562 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC-CchhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence 444455555666666665531 13311 2234455555555554444444333
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.47 E-value=46 Score=32.44 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 000951 231 KLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLN 310 (1211)
Q Consensus 231 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 310 (1211)
++...+...+++|+...|..+|+.+.+.|++.. +..+...++-||.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444455556666666666666666666666443 333444444455444433332222 1223333333333322
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 311 FSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRT 378 (1211)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~ 378 (1211)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..++....+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0114666777888888888888887765322 222234455555555554444444444333
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.25 E-value=24 Score=33.86 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=31.9
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
.+.+..+++..++..+.- +.|.. ..-..-+..+...|+|.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566677777776666 66654 33333455566677777777777776543
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.22 E-value=96 Score=38.06 Aligned_cols=67 Identities=18% Similarity=0.050 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCCCCCHH
Q 000951 109 DLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRR-------VDSVWLLFDDMLDRKICPNVA 176 (1211)
Q Consensus 109 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~-------~~~a~~~~~~m~~~~~~~~~~ 176 (1211)
..+|-.+.|+|.+++|.++...... .+......+-..+..+....+ -+....-|++..+.....|++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3566777899999999999955433 234555667777777766432 235666677665543322554
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.92 E-value=2.1 Score=28.66 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.+|..++.+|...|++++|...|+...+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36777777888888888888877765544
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.58 E-value=21 Score=41.24 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 000951 668 MFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYS 747 (1211)
Q Consensus 668 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 747 (1211)
..+.++..+.++|..++|+++ .+|+... .+...+.|+++.|.++..+.. +..-|..|+++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 345566667777777777653 2332211 223456788888877766553 5677888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHH
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFD 827 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 827 (1211)
..+++..|.+.|..... |..|+..+...|+-+--..+-....+.|. .|.--.+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 88888888888887765 33455566666665544444444444332 1222235667788888887
Q ss_pred HHHHH
Q 000951 828 LFNIM 832 (1211)
Q Consensus 828 ~~~~~ 832 (1211)
++-+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76543
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.70 E-value=1.4e+02 Score=36.68 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=33.1
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHh---c
Q 000951 744 HGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGT-MVDCFTFNVLMRKCCE---A 819 (1211)
Q Consensus 744 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~ 819 (1211)
..+.-.|+++.|++.+-.- .+...|.+.+... +...|-+......-..++.... .|...-+..|+..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIa---L~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIA---LAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHH---HHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHH---HHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4456678888888887661 1122344443322 2223333222222233332211 1112445666766765 3
Q ss_pred CcHHHHHHHHHHHH
Q 000951 820 GEMGKAFDLFNIMN 833 (1211)
Q Consensus 820 g~~~~A~~~~~~~~ 833 (1211)
.+..+|.++|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 46667777765554
No 330
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.50 E-value=55 Score=31.94 Aligned_cols=129 Identities=10% Similarity=0.176 Sum_probs=75.8
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 000951 128 FQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYV 207 (1211)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 207 (1211)
.+.+.+.+++|+...+..+++.+.+.|++.....+.. .++-+|.......+-.+ .+....+.++=-.|.++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH---
Confidence 3445567788888899999999999988766555544 34555555444443222 23345566665566543
Q ss_pred CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 208 PNIV-TYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271 (1211)
Q Consensus 208 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (1211)
.. .+..++..+...|++-+|+++....... +......++.+..+.+|...=..+++-.
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12 4556677788888888888887765321 1222234555555555544433343333
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.15 E-value=19 Score=36.99 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHH----cCCCCchH--HHHHHHHHHHhcCCH-------HHHHHHHHHHHhCCccc-----CHHHHHH
Q 000951 890 GNFQGAFKLKDEMEA----LGISSSDV--AESAMVRGLAHCGKV-------EEAMLVLNRMLRMRLVP-----TIATFTT 951 (1211)
Q Consensus 890 g~~~eA~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~g~~-------~eA~~~~~~~~~~~~~p-----~~~~~~~ 951 (1211)
-.+++|++.|.-++- .+.++... .+-.++++|...|+. ..|++.|.++.+....| ...+...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 345566666655531 22233322 344557777777773 34555555555443222 2344555
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 952 LIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+|...++.|++++|...|..+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 666666777777777766665544
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.03 E-value=4.8 Score=44.64 Aligned_cols=146 Identities=9% Similarity=0.128 Sum_probs=83.3
Q ss_pred HhcCcHHHHHH-HHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhH
Q 000951 817 CEAGEMGKAFD-LFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGA 895 (1211)
Q Consensus 817 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA 895 (1211)
...|++-.|.+ ++..+....-.|+.+ ..........|.++.+...+..+-. -+.....+...+.....+.|+|++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHH
Confidence 44577766654 444444332233333 3333445667888888877766543 1222345666777777788888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH--hhhhCC-HHHHHH
Q 000951 896 FKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK--FCKEAK-FVDALK 967 (1211)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~--~~~~g~-~~~A~~ 967 (1211)
+..-+-|+...++. +++....+..-...|.+++|+..+++++..+++ ....|.+.... |...|+ +.||..
T Consensus 377 ~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~-~~~g~v~~~~~~~~~~~~~~~~~~~~ 449 (831)
T PRK15180 377 LSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE-TQSGWVNFLSSTQYFNDGNAFSEAFH 449 (831)
T ss_pred HHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCCh-hcccceeeeccceeccCcchHHHHHH
Confidence 88888777544333 333332233334567788888888888887765 33444333322 334443 445444
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.33 E-value=35 Score=32.23 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=28.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951 714 MGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
.++.+++..++..+.- +.|+ ...-..-+..+...|+|.+|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 6666777777766652 3442 222222334456667777777777766653
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.95 E-value=1.5e+02 Score=36.02 Aligned_cols=54 Identities=20% Similarity=0.044 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 427 INGFCKVGMTRKAKAVLCKMYRDGLVPN---KIIYSTLIYYFCKMGKVTEAMKVYAVMN 482 (1211)
Q Consensus 427 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 482 (1211)
|+.+.+.+.+++|+...+... |..|. .......|..+.-.|++++|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344455556666655544322 22221 2233344444444455555444444443
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.68 E-value=1.5e+02 Score=35.95 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=59.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 000951 357 LNGFCKHAKFDLARSLLERMRTNGISI---SCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKV 433 (1211)
Q Consensus 357 l~~~~~~g~~~~a~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 433 (1211)
++.+.+.+.+++|.++.+.... ..+ -..++..+|+.|.-.|++++|-...-.|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3445556666666665443322 222 2345677788888888888888888888754 566676666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 000951 434 GMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCK 467 (1211)
Q Consensus 434 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 467 (1211)
++......++ ....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 6655443332 111111344566666666655
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.56 E-value=2.8 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 337
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.30 E-value=1e+02 Score=33.65 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHHHHcC
Q 000951 612 WEAIVLLDEMVQFNLLPDRYTYTILLAGLCR--KG----KVVSALLFFEKVVSKR 660 (1211)
Q Consensus 612 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~ 660 (1211)
++.+.+++.+.+.|+..+..++.+-...... .. ....|..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3445666777777776666555442222211 11 2344666666666654
No 338
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.71 E-value=98 Score=33.12 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=12.2
Q ss_pred HHHHHHhhcchhhHHHHHHHHHH
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
|+..-.+.|+..||.+.|+...+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Confidence 33333455666666666655544
No 339
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.71 E-value=2.3 Score=45.32 Aligned_cols=92 Identities=9% Similarity=-0.079 Sum_probs=52.0
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
.|.+++|++.|-.+++.+ ++....+..-+.++.+.++...|+.-+..+++.++. ....|-.-+.+-+-.|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 455556666665555542 444444555555666666666666666666665544 444455555555566666666666
Q ss_pred HHHHHhcCCCCchH
Q 000951 969 KGTMELSGVKLDVV 982 (1211)
Q Consensus 969 ~~~~~~~~~~p~~~ 982 (1211)
+.....++.++...
T Consensus 205 l~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 205 LALACKLDYDEANS 218 (377)
T ss_pred HHHHHhccccHHHH
Confidence 66555554444433
No 340
>PRK09687 putative lyase; Provisional
Probab=78.54 E-value=1e+02 Score=33.33 Aligned_cols=121 Identities=11% Similarity=0.053 Sum_probs=49.7
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc-chhhHHHHHHHHHHcCCCCChhHHHHHH
Q 000951 805 DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIA-AFQESHFVLRGMAEKGLTPKCTQYITLI 883 (1211)
Q Consensus 805 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~g~~p~~~~~~~l~ 883 (1211)
+..+-...+.++.+.++ ++|+..+-.+++ .++...-...+.++.+.+ ...++...+-.++ .+++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHH
Confidence 33344444444444443 345555555543 233333333333333221 1234444444444 233333344444
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.++.+.|+ .+|+..+-+.++.+. .....+.++...|.. +|+..+.++.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 44444444 344444444443211 122334444444442 45555555554
No 341
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.97 E-value=72 Score=32.77 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=31.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 883 INGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
..++...|++-++++.-..++.+ .+.+..+|..-+.+....-+.++|..-|.++++.+
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444555555555555555544 24445555555555555555556666566665554
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.94 E-value=3 Score=27.54 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 949 FTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 949 ~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+..++.++.+.|++++|...|+.+...
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555666666666666666555443
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.80 E-value=42 Score=35.72 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh
Q 000951 239 KGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRM---ITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNS 315 (1211)
Q Consensus 239 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 315 (1211)
.|.+..+.+...++.......+++.+..++-.++... ..|+...++. +. .+-.-+.++++.++..-+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~-ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW-IR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH-HH-HHHccChHHHHHHHhCcchhccccch
Confidence 3444555555555555555556666666555554321 2222222221 11 22233455666666666666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000951 316 ITYNELIDGHCCKGNFKEAFRLLAMMEE 343 (1211)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (1211)
++++.+|+.+.+.+++.+|..+.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666666555543
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.64 E-value=1.4e+02 Score=34.32 Aligned_cols=239 Identities=10% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----C-ChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 000951 615 IVLLDEMVQFNLLPDRYTYTILLAGLCRK-----G-KVVSALLFFEKVVSKRTFSPN-NVMFTCLVDGLFKAGQSKAAMH 687 (1211)
Q Consensus 615 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g-~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 687 (1211)
.++|+...+- -|....|+..|..|... | ....-..+|+...+.+...++ ...|..+.-.+.......+
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~--- 376 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE--- 376 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---
Confidence 3666666542 34555566666655432 2 445556677777666555554 3455555555544433322
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-CChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHH-HH-HHHHH
Q 000951 688 ISKIMDKEGVYPDTIAFNAVMDGFSRM-GNMM-MANDLLSTMRSRKLCPSLATYNILLHGYSKKKD-LLMC-SM-LLNTM 762 (1211)
Q Consensus 688 ~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~-~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A-~~-~~~~~ 762 (1211)
.-..+...++..+...|..-+...... .+++ .-..+|......-..+....|+... .|+ .... .. ++..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 222233233455666665544444321 1111 1112222222211122334444333 222 1111 11 22222
Q ss_pred HHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH---HHhcCcHHHHHHHHHHHHH-CCC
Q 000951 763 KMEGLLPDKLTCH-SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK---CCEAGEMGKAFDLFNIMNM-LGV 837 (1211)
Q Consensus 763 ~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~ 837 (1211)
.. -..|+..++. .++..+.+.|-+.+|...|..+... .++....+..+++. ...+| +..+.++|+.+.. .|
T Consensus 452 ~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 452 LS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG- 527 (568)
T ss_pred HH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-
Confidence 22 2445665553 4556666777778888888877764 44555666666542 22233 5666666666653 33
Q ss_pred CCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951 838 VPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 838 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
.|+..|-.....=..+|+.+.+-.+|.++.
T Consensus 528 -~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 -ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred -CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 455555444444445555555555554444
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.47 E-value=4.7 Score=28.39 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
++.++..|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 44455555555555555555555443
No 346
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=77.10 E-value=1.3e+02 Score=33.76 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 000951 388 YTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCK 467 (1211)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 467 (1211)
-|-++.-|...|+..+|.+..+++... .......-+++.-.+.-..|..+.-.+...+...+..+-+.+..++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vs-----ffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVS-----FFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCC-----chhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Confidence 355667788889888888888887532 222222223333333323333222223333333344444556666665
Q ss_pred cCC--------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 000951 468 MGK--------VTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLG 539 (1211)
Q Consensus 468 ~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g 539 (1211)
.+. +..|...|+.+..+.+.-+-..-+++-..-...|+.+. .+.|++ ....+|+-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcC
Confidence 432 34566667666554332221111222222233444333 222222 3456889999999
Q ss_pred CHHHHHHHHHHH
Q 000951 540 DGLKAFSMFDEM 551 (1211)
Q Consensus 540 ~~~~A~~~~~~m 551 (1211)
+..+.+..++++
T Consensus 360 Dt~Evi~~L~DL 371 (645)
T KOG0403|consen 360 DTPEVIRSLRDL 371 (645)
T ss_pred ChHHHHHHHHHc
Confidence 999988888865
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.93 E-value=59 Score=30.78 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=32.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCcchhhhhhccCCCCCCChHHHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 000951 66 KTRMYEDAKLILRQLAQMGIGQNSVFGSLMNTYPLCNSNPSVFDLLIRVYLREGMVEYALETFQLMGFRG 135 (1211)
Q Consensus 66 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 135 (1211)
+...++++..+++.|.-.- |..+.+-.+-...+...|+|.+|+++|+.+...+
T Consensus 22 ~~~d~~D~e~lLdALrvLr-----------------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-----------------PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-----------------CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4677788888877764321 1222222223344567788888888888877654
No 348
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.27 E-value=98 Score=31.86 Aligned_cols=64 Identities=8% Similarity=-0.096 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
+.++...+...|++-++++.-..++...+. |..+|..-+.+....=+..+|..-|....++ +|.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--dps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--DPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--Chh
Confidence 334555667778888888888888887765 8888888888777777778887776655544 663
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.28 E-value=1.1e+02 Score=32.42 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 319 NELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARSLLERM 376 (1211)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~ 376 (1211)
+.....|..+|.+.+|..+.++....+ +.+...+-.+++.+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455666666666666666666543 345555666666666666655555544444
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.23 E-value=33 Score=31.71 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
....|+-++++.|+|+.++.+.+
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd 95 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVD 95 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHH
Confidence 33444444444444444444443
No 351
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.05 E-value=0.22 Score=47.88 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHH
Q 000951 779 LGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFN 830 (1211)
Q Consensus 779 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 830 (1211)
..+.+.+.......+++.+...+...+....+.++.+|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444455556666666666654444445566666666666655555555544
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.76 E-value=1e+02 Score=31.26 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
.+.+.+.+++|+...+.-++..|. |...-..|...|+-.|+|+.|..-++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHH
Confidence 344445555555555554444433 44445555555555555555555444
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.66 E-value=5.5 Score=28.01 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
.++..|+..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567778888888888888888777753
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.58 E-value=1.2e+02 Score=31.97 Aligned_cols=95 Identities=15% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHH----HHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHc----CCCCCHhhHH
Q 000951 740 NILLHGYSKKKDLLMCSMLLNTM----KMEGLLPDKLTCHSLI-LGFCETGMLEVGFKFLKKMIAE----GTMVDCFTFN 810 (1211)
Q Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~ 810 (1211)
..++..+.+.|.+.+|+.+...+ .+..-+|+..+.+.+- .+|.+..+..++..-+..+... -.||-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 35677888899999998766544 3434556655554332 4666666766666555544332 1233333333
Q ss_pred HHHH--HHHhcCcHHHHHHHHHHHHH
Q 000951 811 VLMR--KCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 811 ~l~~--~~~~~g~~~~A~~~~~~~~~ 834 (1211)
-|.+ ..|...++.-|...|-++.+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 3333 24455677788887777665
No 355
>PRK09687 putative lyase; Provisional
Probab=74.34 E-value=1.3e+02 Score=32.49 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 000951 530 CMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGL 570 (1211)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 570 (1211)
..+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 445555555553 455555555542 23444444444443
No 356
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.86 E-value=32 Score=36.51 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 000951 226 YKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNM 271 (1211)
Q Consensus 226 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (1211)
+++++.++..=+.-|+-||.++++.+|+.+.+.+++.+|..+.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444455555555555555555544444444433
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.73 E-value=23 Score=30.54 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=39.5
Q ss_pred HHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChh-HHHHHHHHH
Q 000951 932 LVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVM-PAFELYEEM 1007 (1211)
Q Consensus 932 ~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 1007 (1211)
..+++.++.+|. |......++..+...|++++|++.+-.+....-.. +...-..++.++...|.-+ .+.+.++++
T Consensus 9 ~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 9 AALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 334445555554 66777777777777777777777655444431111 2234556666666555543 344444444
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.35 E-value=15 Score=42.27 Aligned_cols=115 Identities=18% Similarity=0.008 Sum_probs=72.8
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH
Q 000951 872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT 951 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~ 951 (1211)
+.|-..+.+.-+--+...|+.-.|.+.+..+.........+....++..+.+.|...+|-.++.+.+..... .+.....
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHh
Confidence 444434444333344466888888888887764432233344556677777777777888888877776644 6667777
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951 952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS 989 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 989 (1211)
+|+++....+++.|++.|+..... +|+.. .-+.|..
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKL--TTKCPECENSLKL 718 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhc--CCCChhhHHHHHH
Confidence 888888888888888877755544 66544 3344443
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.17 E-value=37 Score=33.98 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCChhhH
Q 000951 823 GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEK---GLTPKCTQYITLINGMCRVGNFQGA 895 (1211)
Q Consensus 823 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~eA 895 (1211)
++|.+.|-.+...+.-.++.....|+.-|. ..+.++|+.++.++++. +-++|+..+.+|+..+.+.|++++|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555554443333333444444444333 34455555555555541 1133445555555555555555554
No 360
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.71 E-value=1.6e+02 Score=31.45 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=18.3
Q ss_pred CHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 805 DCFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 805 ~~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
|+..+..++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4667777888888888888888766
No 361
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.68 E-value=1.3e+02 Score=31.39 Aligned_cols=170 Identities=11% Similarity=0.017 Sum_probs=109.6
Q ss_pred hhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH-H
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCR-VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE-E 929 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-e 929 (1211)
+..+...|+.+-..++. ++|.. ..|..--..+.+ ..+..+=++.++++.+. .+.+-.+|..--.+....|+.. .
T Consensus 55 ~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred ccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccc
Confidence 44566788888888888 77854 222222222222 23466777788888765 5888888887766777777777 7
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-CCC---hhHHHHHHH
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCA-NGD---VMPAFELYE 1005 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~---~~~a~~~~~ 1005 (1211)
-+++.+.|++.+-+ |--+|..--+++..-+.++.-+..-..+.+..+ -++.+|+.-.-.... .|- +.-..++--
T Consensus 132 ELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 88999999987766 788999999999999999998887666665422 355566432221111 222 333344433
Q ss_pred HHHHcCCccCh-hhHHHHHHHHH
Q 000951 1006 EMKHKGLCPNS-TTYSVLIDAIS 1027 (1211)
Q Consensus 1006 ~~~~~g~~p~~-~~~~~l~~~~~ 1027 (1211)
.|...-+.|+. .+|..+...+.
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHH
Confidence 44444567877 77777765544
No 362
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.25 E-value=55 Score=38.17 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=46.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHHHHH
Q 000951 292 KEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDLARS 371 (1211)
Q Consensus 292 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 371 (1211)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4556666555544432 344566666666666666666665554432 3344444444555444444
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951 372 LLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNK 410 (1211)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 410 (1211)
+-....+.|. .|.-.-+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444332 11222234444555555554433
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.86 E-value=54 Score=28.47 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=42.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 000951 391 VIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIY 458 (1211)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 458 (1211)
-+..+...|+|++|..+.+.+ +.||...|.+|-.. +.|..+++..-+.+|..+| .|...+|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566778888888877766 36888888776543 6677777777777777776 4444444
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.84 E-value=1.7e+02 Score=31.23 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
-....|...|.+.+|..+.+..++ .+| +...+..|+..+...|+--.|.+.|+++
T Consensus 284 kva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344566667777777777777766 666 3455666666777777766666666665
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.74 E-value=1.4e+02 Score=30.19 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc---ccCHHHHHHHHHHhhhhCCH
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL---VPTIATFTTLIHKFCKEAKF 962 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~---~p~~~~~~~L~~~~~~~g~~ 962 (1211)
+.+.|+ ++|.+.|-.+...+.-.++.....++..|. .-+.++|+.++.++++... .+|+..+.+|+.++.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 778888888876665667777777776665 5668899999999888532 34788888999999999998
Q ss_pred HHHH
Q 000951 963 VDAL 966 (1211)
Q Consensus 963 ~~A~ 966 (1211)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.70 E-value=7.9 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.++..+...|++++|...|+++++
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 334444444444444444444443
No 367
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.76 E-value=11 Score=42.47 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=44.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCchHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951 884 NGMCRVGNFQGAFKLKDEMEALGISSSDVA-ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF 962 (1211)
Q Consensus 884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~ 962 (1211)
+-....+.++.|..+|.++++. .|+-.+ +..-..++.+.+.+..|+.=+.++++.+|. ...+|..-|.++.+.+++
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 3344445555555555555544 333332 223334555555555555555555555533 444555555555555555
Q ss_pred HHHHHHHHHHHh
Q 000951 963 VDALKLKGTMEL 974 (1211)
Q Consensus 963 ~~A~~~~~~~~~ 974 (1211)
.+|...|+....
T Consensus 89 ~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 89 KKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHhhh
Confidence 555555554443
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.69 E-value=59 Score=30.14 Aligned_cols=71 Identities=7% Similarity=0.036 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 873 TPKCTQYITLINGMCRVG---NFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 873 ~p~~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
.+...+-..++.++.+.. +..+++.+++.+.+.. ......-.+-++..+++.|+|++++++.+..++..|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 455567777777777665 4557888888887522 2223334455677888899999999998888887644
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.82 E-value=2.6e+02 Score=35.29 Aligned_cols=129 Identities=11% Similarity=-0.002 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 000951 703 AFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGF 781 (1211)
Q Consensus 703 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 781 (1211)
-|..|+..|...|+.++|.+++.+..+..-.-|... ...++.-+++++.. ..|+. ..|...-+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~----------~~~~e~ii~YL~~l----~~~~~~Li~~y~~wv- 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ----------LDGLEKIIEYLKKL----GAENLDLILEYADWV- 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch----------hhhHHHHHHHHHHh----cccchhHHHHHhhhh-
Confidence 467788888888888888888888775310001000 00112222222222 12221 111111111
Q ss_pred HhcCChHHHHHHHHH---HHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951 782 CETGMLEVGFKFLKK---MIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (1211)
-..+.+.++++|.. -....++++. +--|......+-++.+++.+....-.++..-.+.++..|..
T Consensus 571 -l~~~p~~gi~Ift~~~~~~~~sis~~~------Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 -LNKNPEAGIQIFTSEDKQEAESISRDD------VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hccCchhheeeeeccChhhhccCCHHH------HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 23445556666554 1111222221 22355566777788888888765545566666666666653
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.50 E-value=9.7 Score=24.15 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=8.1
Q ss_pred HHHHHHhhcchhhHHHHHHHH
Q 000951 847 IIMGLKRIAAFQESHFVLRGM 867 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~ 867 (1211)
++..+...|++++|...|++.
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333333344444333333
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.46 E-value=2.6e+02 Score=32.29 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000951 489 DHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLK 568 (1211)
Q Consensus 489 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 568 (1211)
|....-+++..+..+-...-.+.+..+|+..| -+...|..++..|..+ ..+.-..+++++.+..+ .|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 45555566666666666666666666666653 3556666677777666 44555666666665432 23333333333
Q ss_pred HHHcCCCHHHHHHHHHHhh
Q 000951 569 GLCKGGNLKEAKRFLNSLH 587 (1211)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~ 587 (1211)
-|-+ ++.+.+..+|..+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 3333 55555555555544
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.20 E-value=58 Score=28.29 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=21.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 000951 255 LCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLN 310 (1211)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 310 (1211)
+...|+|++|..+.+.+ +.||...|-.|-. .+.|.-+.+..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444444444443333 3445444444422 24444444444444444443
No 373
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.35 E-value=1.3e+02 Score=36.19 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhcCC
Q 000951 720 ANDLLSTMRSRKLCPS---LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL----------TCHSLILGFCETGM 786 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----------~~~~l~~~~~~~g~ 786 (1211)
-...+.+|..+--+|+ ..+...++-.|....+|+..+++.+.+..- ||.. .|...+.---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 3445666766533443 455566677788888888888888887762 4332 12222233334577
Q ss_pred hHHHHHHHHHHHHc
Q 000951 787 LEVGFKFLKKMIAE 800 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~ 800 (1211)
-++|+...-.+.+.
T Consensus 259 RakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888877777665
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.24 E-value=10 Score=23.64 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=10.2
Q ss_pred HHHHHHhhhhCCHHHHHHHH
Q 000951 950 TTLIHKFCKEAKFVDALKLK 969 (1211)
Q Consensus 950 ~~L~~~~~~~g~~~~A~~~~ 969 (1211)
..|+.++...|++++|+..+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 44555555555555555443
No 375
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=63.47 E-value=1.2e+02 Score=27.52 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=9.9
Q ss_pred HHHHhCCChhHHHHHHHH
Q 000951 989 SGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 989 ~~~~~~g~~~~a~~~~~~ 1006 (1211)
.++...|+.++|...+++
T Consensus 108 ~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 355566666666666553
No 376
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.99 E-value=3.9e+02 Score=33.05 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=7.3
Q ss_pred HcCCHHHHHHHHHHH
Q 000951 678 KAGQSKAAMHISKIM 692 (1211)
Q Consensus 678 ~~g~~~~A~~~~~~~ 692 (1211)
..++++.+...+..|
T Consensus 324 ~~~dw~~~~~~i~~L 338 (644)
T PRK11619 324 GTGDRRGLNTWLARL 338 (644)
T ss_pred HccCHHHHHHHHHhc
Confidence 445555544444444
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.97 E-value=15 Score=41.58 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKCT-QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
-+......+.++.|+.+|.++++ ++|+.. .|..-+.++.+.+++-.|+.-..++++.. +.....|..-+.++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 45566778899999999999999 999874 44455688999999999999999998874 444556777778888899
Q ss_pred CHHHHHHHHHHHHhCCcc
Q 000951 926 KVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~ 943 (1211)
++.+|+..|+......|.
T Consensus 87 ~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHHHHHhhhcCcC
Confidence 999999999999886543
No 378
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.30 E-value=3e+02 Score=31.60 Aligned_cols=155 Identities=12% Similarity=-0.036 Sum_probs=85.9
Q ss_pred HhhcchhhHHHHHHHHHHc-CCCCCh--------hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHH--HHHHHH
Q 000951 852 KRIAAFQESHFVLRGMAEK-GLTPKC--------TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAE--SAMVRG 920 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~-g~~p~~--------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~--~~l~~~ 920 (1211)
.-.|++.+|++-..+|.+- ...|.+ .....++--+..-+.+++|...|..+.+...+-+..++ ..++..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 4568888998888888862 223431 11122333334668889999999888765444444433 356778
Q ss_pred HHhcCCHHHHHHHHHHHHhCCccc-C-----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-----HHHHHHH
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLVP-T-----IATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-----SYNVLIS 989 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~p-~-----~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~ 989 (1211)
|.+.|+-+.-.++++.+--.+-.+ . ...+..-|.-..++|++.||....++.....-..|.. ....|+.
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 888887776666655532211000 0 1222223333456788899888765443322111211 1233444
Q ss_pred HHHhCCChhHHHHHHHH
Q 000951 990 GLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 990 ~~~~~g~~~~a~~~~~~ 1006 (1211)
.....|+-.++.++.+-
T Consensus 494 v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHhcchHHHHhccch
Confidence 56677777777666543
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.11 E-value=20 Score=29.59 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
+....+.++|+..++++++.-..| --.++..|..+|+..|++++++..
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888865443 224556667778888888888875
No 380
>PRK10941 hypothetical protein; Provisional
Probab=61.11 E-value=47 Score=35.52 Aligned_cols=59 Identities=10% Similarity=-0.080 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.+-.+|.+.++++.|+.+.+.++...|. ++.-+...|.+|.+.|.+..|..-++...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445677777788888888877777765 7777777777788888888877766665544
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.58 E-value=17 Score=27.49 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
.++.++.+.|++++|.+..+.+++..|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 344555666666666666666666543
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.89 E-value=4.2e+02 Score=32.76 Aligned_cols=463 Identities=8% Similarity=-0.066 Sum_probs=226.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951 527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC 606 (1211)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 606 (1211)
.|.....+ .+.|++..+..+...+....+ ..-..|..+...+. ....++...++..--..+ .....-......+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P--~~~~Lr~~~l~~La 110 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLP--PARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCc--hHHHHHHHHHHHHH
Confidence 44444444 356778887777766642211 11222332222211 224555555554432211 12333344455556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951 607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM 686 (1211)
Q Consensus 607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 686 (1211)
+.+++.+.+..+.. .+.+...-.....+....|+.++|......+-..|...|+ ....+++.+.
T Consensus 111 ~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~--~cd~l~~~~~--------- 174 (644)
T PRK11619 111 RREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPN--ACDKLFSVWQ--------- 174 (644)
T ss_pred HccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCh--HHHHHHHHHH---------
Confidence 66777666552211 2334444556667777788888887777777666633333 2333443333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951 687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLA-TYNILLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
+.|.-.+..+|.. +......|+...|..+...+. ++.. ....++..+.. ...+...+..
T Consensus 175 -------~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~---p~~~~~~~~~---- 234 (644)
T PRK11619 175 -------QSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQND---PNTVETFART---- 234 (644)
T ss_pred -------HcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHC---HHHHHHHhhc----
Confidence 3333333334433 333445677777776666552 2222 22233333322 2322222211
Q ss_pred CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC
Q 000951 766 GLLPDKL--TCHSLILGFCETGMLEVGFKFLKKMIAE-GTMVD--CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840 (1211)
Q Consensus 766 g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 840 (1211)
..|+.. .+..+...-....+.+.|...+...... .+.++ ..+...++......+..++|...++...... .+
T Consensus 235 -~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~ 311 (644)
T PRK11619 235 -TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QS 311 (644)
T ss_pred -cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CC
Confidence 112221 1111111112345668899999887544 23322 2234444433333333678888887765322 23
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
.......+..-...++++.+...+..|.... .-...-..-++.++...|+.++|...|+++.. +. ..|..++..
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~--~fYG~LAa~ 385 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR--GFYPMVAAQ 385 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC--CcHHHHHHH
Confidence 3333334444448889998888888875422 22345566788888889999999999999843 11 233333221
Q ss_pred HHhcCCH---HHH-HHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951 921 LAHCGKV---EEA-MLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD 996 (1211)
Q Consensus 921 ~~~~g~~---~eA-~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 996 (1211)
+.|.. ... ...-...... + .-..-+..+...|+..+|...+..+... .+......++......|.
T Consensus 386 --~Lg~~~~~~~~~~~~~~~~~~~----~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~ 454 (644)
T PRK11619 386 --RLGEEYPLKIDKAPKPDSALTQ----G--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQW 454 (644)
T ss_pred --HcCCCCCCCCCCCCchhhhhcc----C--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Confidence 22221 000 0000000000 1 1123445667789999998877665543 333455555555557777
Q ss_pred hhHHHHHHHHHHHcC-Cc-cChhhHHHHHHHHHhcccchHHHHHHHHHHHHcCCccc
Q 000951 997 VMPAFELYEEMKHKG-LC-PNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISW 1051 (1211)
Q Consensus 997 ~~~a~~~~~~~~~~g-~~-p~~~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 1051 (1211)
++.++.......... +. .-|..+...+....+..+.+. +.-+--..+|.+|.|.
T Consensus 455 ~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~-~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 455 WDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQ-SYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCH-HHHHHHHHHhcCCCCC
Confidence 777776664332100 00 011223333333333333333 2222233367878775
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.86 E-value=45 Score=35.94 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=64.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMNMLGV-VPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC 887 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 887 (1211)
=++-|.+..+|..|.+.|.+.+.... .|| .+.|++-+.+-.-.|++..|+.-..+++. ++|++ ..|..-+.++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHH
Confidence 34557777888888888887765332 233 56677777777788888888888888888 88876 56666666777
Q ss_pred hcCChhhHHHHHHHHH
Q 000951 888 RVGNFQGAFKLKDEME 903 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~ 903 (1211)
...++++|....++..
T Consensus 165 eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 7777777777666553
No 384
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.65 E-value=14 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 000951 107 VFDLLIRVYLREGMVEYALETFQ 129 (1211)
Q Consensus 107 ~~~~l~~~~~~~g~~~~A~~~~~ 129 (1211)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456777778888888877765
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.29 E-value=1.7e+02 Score=27.80 Aligned_cols=81 Identities=9% Similarity=0.203 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHhHHHHH
Q 000951 283 YNTLINGFVKEGKIQVASRVFDEMSMLNF-----SPNSITYNELIDGHCCKGN-FKEAFRLLAMMEEMGLRPNEVSYGAL 356 (1211)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 356 (1211)
.|.++.-....+++.....+++.+.-... ..+..+|+.++.+..+... ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555566666666666655532210 2345568888888766555 45567788888887778888888888
Q ss_pred HHHHHhc
Q 000951 357 LNGFCKH 363 (1211)
Q Consensus 357 l~~~~~~ 363 (1211)
++++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8876543
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.38 E-value=2.7e+02 Score=32.24 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=17.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHHcCChH
Q 000951 186 CVEGKLKKAGYLLRKMEESGYVPNIVT--YNTLLNWYCKKGRYK 227 (1211)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~ 227 (1211)
++.|+.+- ++.+.+.|..|+... ..+.++..++.|+.+
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~ 49 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE 49 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 34455433 333334565555432 233444444555543
No 387
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.83 E-value=2.3e+02 Score=32.89 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=18.5
Q ss_pred HHHHHHHCCCCcCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 000951 337 LLAMMEEMGLRPNEVS---YGALLNGFCKHAKFDLARSLLERMRTNGISIS 384 (1211)
Q Consensus 337 ~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~ 384 (1211)
+.+.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..++
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n 229 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCN 229 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcc
Confidence 3344455555554332 1233333344454433 333344554444
No 388
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.47 E-value=3.4e+02 Score=30.68 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHHh---cCcHHHHHHHHHHHHHCCCCCChhhHHHH
Q 000951 772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFN-VLMRKCCE---AGEMGKAFDLFNIMNMLGVVPDTNTQDAI 847 (1211)
Q Consensus 772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 847 (1211)
.++..+...+..+|+.+.|.++.++++-. +. ++...+.. ...-..+. +.....-|..-|.++
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~~F~~~~~~~~~g~~r------L~~~~~eNR~fflal 106 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHPSFSPFRSNLTSGNCR------LDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHHHhhhhhcccccCccc------cCCccccchHHHHHH
Confidence 45555667788888888888888877641 11 01111100 00000000 000001122233333
Q ss_pred ---HHHHHhhcchhhHHHHHHHHHHcCCCCC--hhHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCC----CchHHHHHH
Q 000951 848 ---IMGLKRIAAFQESHFVLRGMAEKGLTPK--CTQYITLINGMC-RVGNFQGAFKLKDEMEALGIS----SSDVAESAM 917 (1211)
Q Consensus 848 ---~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~~~~~----~~~~~~~~l 917 (1211)
+..+.+.|.+.-|+++.+-++. ++|+ +-.....++.|+ +.++++--+++++.......+ .-+....+.
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLls--Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLS--LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4456778888888888888888 6664 444444555555 667777777777765431000 111223344
Q ss_pred HHHHHhcCCH---------------HHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 918 VRGLAHCGKV---------------EEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 918 ~~~~~~~g~~---------------~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
+-++...++. ++|...+++++..-| .+...|...+
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP----~vl~~Ll~~l 234 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP----WVLVPLLDKL 234 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH----HHHHHHHHHh
Confidence 4455556665 888888888887643 3455555543
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=55.83 E-value=5.1e+02 Score=32.48 Aligned_cols=223 Identities=12% Similarity=-0.022 Sum_probs=106.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 000951 676 LFKAGQSKAAMHISKIMDKEGVYPDT-------IAFNAVMDG-FSRMGNMMMANDLLSTMRSR----KLCPSLATYNILL 743 (1211)
Q Consensus 676 ~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~ 743 (1211)
.....++.+|..+..++...-..|+. ..+++|-.. ....|++++|.++.+..... -..+....+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34566777777777766322112111 123333221 22367778887777766543 1112455666677
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHHHhcCC--hHHHHHHHHHHHHcC---CCCC---HhhHH
Q 000951 744 HGYSKKKDLLMCSMLLNTMKMEGLLPDKLT---CHSL--ILGFCETGM--LEVGFKFLKKMIAEG---TMVD---CFTFN 810 (1211)
Q Consensus 744 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~---~~~~---~~~~~ 810 (1211)
.+..-.|++++|..+.++..+..-.-+... |..+ ...+..+|+ +.+....++...... .+.. ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778888888887777665321222222 2111 245556663 333333343333220 1111 12233
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCC--CCCC-hhhH---HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----hh--H
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMNMLG--VVPD-TNTQ---DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----CT--Q 878 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~-~~~~---~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----~~--~ 878 (1211)
.+..++.+ ++.+..-.....+.+ ..|. ...+ ..|+..+...|+.++|....+++......++ .. .
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 33333333 333332222221111 0111 1112 2566677778888888888777775333332 11 1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDE 901 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~ 901 (1211)
+.........+|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222334466777777666555
No 390
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.67 E-value=39 Score=25.64 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCCCh
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPKC 876 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~ 876 (1211)
.++-++.+.|++++|....+.+++ ++|++
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 345556666666666666666666 66655
No 391
>PRK10941 hypothetical protein; Provisional
Probab=55.43 E-value=1.3e+02 Score=32.13 Aligned_cols=62 Identities=10% Similarity=-0.029 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
++-.+|.+.++++.|+++.+.++... |.++.-+.--|-+|.+.|.+..|..-++..++.-|+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 44556666666666666666666552 444444555666677777777777766666665443
No 392
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=55.22 E-value=69 Score=27.73 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 000951 540 DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLH 587 (1211)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 587 (1211)
+..++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555666666666677777777777777777777777777777665
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.80 E-value=1.7e+02 Score=26.59 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=7.7
Q ss_pred cCChHHHHHHHHHHHH
Q 000951 784 TGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 784 ~g~~~~A~~~~~~~~~ 799 (1211)
.|.+++|..-+.+++.
T Consensus 22 ~g~~~eAa~s~r~AM~ 37 (144)
T PF12968_consen 22 DGAYEEAAASCRKAME 37 (144)
T ss_dssp HT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3555555555555443
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.43 E-value=63 Score=32.65 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=30.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM 692 (1211)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 692 (1211)
-++.+.+.+...+|+....+-++.. +.|...-..+++.++-.|+|++|..-++-.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444555666666666666555542 334444555666666666666666555444
No 395
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=53.62 E-value=70 Score=27.68 Aligned_cols=60 Identities=5% Similarity=-0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951 123 YALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILIN 183 (1211)
Q Consensus 123 ~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 183 (1211)
++.+.++.+....+.|+.....+-|++|-+.+++..|.++|+..... +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44455566666678899999999999999999999999999977632 2334446666554
No 396
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=53.42 E-value=6.5 Score=37.56 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 000951 111 LIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFD 164 (1211)
Q Consensus 111 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~ 164 (1211)
++..|.+.+.++.....++.+...+...+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444444444433323334444444444444444444444433
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.00 E-value=4.2e+02 Score=32.27 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHH
Q 000951 104 NPSVFDLLIRVYLREGMVEYALETFQL 130 (1211)
Q Consensus 104 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 130 (1211)
+|..|. .+..+.-.|+++.|.+++..
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 366666 56667777899999888854
No 398
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.69 E-value=4.2e+02 Score=30.66 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHHHHHHHHh---hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 000951 844 QDAIIMGLKR---IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG 890 (1211)
Q Consensus 844 ~~~l~~~~~~---~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 890 (1211)
+..++.++.+ .++.+.|+.++..|++.|.+|....-..+..++..-|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4444444443 3678888888888888887776554444444444444
No 399
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=51.89 E-value=1.7e+02 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+..+-++.+..++..|.+.+..+-+.+|++-+++.-|..+++.++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 56666777778888888888888888999999999998888877755
No 400
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.88 E-value=94 Score=36.63 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-Ch------hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KC------TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESA 916 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 916 (1211)
|+..... .+..++..++++|..-+. .-| |. .....+.-+|....+.|.|.++++++.+.. +.++..-.-
T Consensus 358 Wn~A~~~-F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 358 WNTAKKL-FKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHhhHHH-HHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 4433333 344566666666666554 222 22 223344445555666666666666665542 112222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
+..+....|.-++|+.+......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 33344445556666666555443
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.87 E-value=2.6e+02 Score=29.34 Aligned_cols=24 Identities=4% Similarity=-0.158 Sum_probs=12.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
++..+.+.|+++++...++++...
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~ 30 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEM 30 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc
Confidence 334444555555555555555554
No 402
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.73 E-value=29 Score=28.63 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCChhhHHH
Q 000951 879 YITLINGMCRVGNFQGAFK 897 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~ 897 (1211)
+-.++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 403
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=50.37 E-value=69 Score=28.05 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951 123 YALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILIN 183 (1211)
Q Consensus 123 ~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 183 (1211)
+..+.+..+....+.|+.....+.|++|-+.+++..|.++|+-+... +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44455666666778899999999999999999999999999887643 3333336766664
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.22 E-value=3.5e+02 Score=28.94 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR 814 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 814 (1211)
|+..+..++..|.+.|++.+|...|-.-- .|+...+..++.-....|...++ |.....+++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL- 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL- 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-
Confidence 78888888899999999888887663221 23333332233222223332222 222222222
Q ss_pred HHHhcCcHHHHHHHHHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~ 834 (1211)
.|...++...|...++...+
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 46667888888888776654
No 405
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.86 E-value=55 Score=34.60 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..+.|+.++|..+|+.++... +.++.++..++.......++-+|-.+|-+++...|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 346667777777777776552 455666666666666666666676776666665443
No 406
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.54 E-value=1e+02 Score=33.30 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHc-CCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEK-GLTPKC--TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~-g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
.|---++-|.+.+++..|...|.+.++. .-+|+. +.|.+-+.+-...|++..|+.--.+++... +....++..=+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 3444567788999999999999999863 345654 778888888888999999988888887653 334445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 000951 920 GLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~ 939 (1211)
++....++.+|....+..++
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 66777777777777666544
No 407
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.47 E-value=27 Score=35.32 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..+.++.+-|.++|.++++. .+.....|..++..-.+.|+++.|.+.|++.++.+|+
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 44667778888888888765 3555667777788788888888888888888887765
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.56 E-value=38 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=9.8
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMK 763 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~ 763 (1211)
|..+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.46 E-value=4e+02 Score=34.26 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQYI 880 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~~~ 880 (1211)
|-..++.+.+.+-.+.+.++-..+++. ++++ ..+++++.+-....|.+.+|...+-+ +||. ....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 444555666666677777766666552 2222 33455555555566666665544322 3443 4455
Q ss_pred HHHHHHHhcCChh
Q 000951 881 TLINGMCRVGNFQ 893 (1211)
Q Consensus 881 ~l~~~~~~~g~~~ 893 (1211)
.++..++.+|.++
T Consensus 1059 qlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1059 QLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhccchH
Confidence 5666666666554
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.18 E-value=4e+02 Score=28.45 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhC-----CCC--------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh--CCCC
Q 000951 108 FDLLIRVYLREGMVEYALETFQLMGFR-----GFN--------PSVYTCNMMLSFMLKDRRVDSVWLLFDDMLD--RKIC 172 (1211)
Q Consensus 108 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~--------~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~--~~~~ 172 (1211)
.+.-...+.-..+|..|++++++-.+. +-. .....+-.-|.++...++..++..|.-+--. ..++
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 333344445557788888888764321 001 1123355667888889998888877765432 1244
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHH-----cCChHHHHHHH
Q 000951 173 PNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCK-----KGRYKAAFKLI 233 (1211)
Q Consensus 173 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-----~g~~~~A~~~~ 233 (1211)
|.+ .-.-|-.|.|.|.+..+.++-......--.-+...|.+++..|.. .|.+++|.++.
T Consensus 118 pkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 444 333444567888888888887777764222234457777766554 57888887766
No 411
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=4.4e+02 Score=31.01 Aligned_cols=148 Identities=19% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 860 SHFVLRGMAEKGLTPKC---TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNR 936 (1211)
Q Consensus 860 A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 936 (1211)
++..-++....-..|+. ......+.++...|.+.+++...++.... ...|-.++..+...|...+|...+-+
T Consensus 284 ~l~e~ek~~~~~~~~d~~r~~~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~ 358 (587)
T COG4715 284 ALHEDEKGWELVLSPDEQRDVVVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLAR 358 (587)
T ss_pred HHHHHHHhcccccCChHHHHHHHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHH
Q ss_pred HHhCCcc--cCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCcc
Q 000951 937 MLRMRLV--PTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCP 1014 (1211)
Q Consensus 937 ~~~~~~~--p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p 1014 (1211)
-+...-+ -....-.+++..+...|++..|.++ ....+..+|+..+|-.+-.+-...|-|++-....-.-.+.|..|
T Consensus 359 ~~r~a~~q~~t~q~~q~l~el~~~~g~~~~a~~L--aq~~F~r~p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~~~~~~p 436 (587)
T COG4715 359 GIRTAREQLQTTQLPQTLAELKEEEGRLGFAAEL--AQEAFFRTPNGRSYLGLWLAAVYAGIGREEREAALAYLEVGESP 436 (587)
T ss_pred HHhhhhHhhhhhhhHHHHHHHHHhhcchHHHHHH--HHHHccCCCCccchhhHHHHHHHhhhchHHHHHHHHHHHhccCc
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.14 E-value=4.7e+02 Score=29.01 Aligned_cols=79 Identities=5% Similarity=-0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---hcchhhHHHHH
Q 000951 788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR---IAAFQESHFVL 864 (1211)
Q Consensus 788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA~~~~ 864 (1211)
+.-+.+++++++.+ +.+......++..+.+....++..+.|++++... +.+...|...+.-... .-.+++....|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44455666666652 2334455555566666666666666666666532 1234455444443322 12344555555
Q ss_pred HHHH
Q 000951 865 RGMA 868 (1211)
Q Consensus 865 ~~~~ 868 (1211)
.+.+
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 4444
No 413
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.88 E-value=3.2e+02 Score=29.82 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALG-ISSSDVAESAMVRGLAHCGKVEEAMLVLNR 936 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 936 (1211)
..-..+|+.... +.|+++.-.+-+-+.....-.+.++.+.+-+...+ .+--...+..-++.+.+.|+.+||...|++
T Consensus 313 ~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 313 PAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred HHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
Confidence 333444555444 55555332333333333344455555555554332 111111223446667777777777777777
Q ss_pred HHhCCcc
Q 000951 937 MLRMRLV 943 (1211)
Q Consensus 937 ~~~~~~~ 943 (1211)
++.+-..
T Consensus 391 Ai~La~~ 397 (415)
T COG4941 391 AIALARN 397 (415)
T ss_pred HHHhcCC
Confidence 7765433
No 414
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.86 E-value=2.3e+02 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=14.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 312 SPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (1211)
.||...|-+|-.. +.|-.+++...+.++...|
T Consensus 68 ~pdL~p~~AL~a~--klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCAW--KLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4555555544433 4555555555555444443
No 415
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=44.84 E-value=55 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhCCHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
.|..++..+..+|++++|+.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 345566666666666666666
No 416
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.25 E-value=2.3e+02 Score=25.19 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951 225 RYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFD 304 (1211)
Q Consensus 225 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 304 (1211)
..++|..+.+.+...+. -...+--+-+..+...|+|++|.. .......||...|-.|- -.+.|--+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45666666666665543 122222233345677888888821 12234568888887774 358888888988888
Q ss_pred HHHhCC
Q 000951 305 EMSMLN 310 (1211)
Q Consensus 305 ~m~~~g 310 (1211)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 887766
No 417
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=44.09 E-value=14 Score=21.17 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=7.6
Q ss_pred hhhHHHHhhc
Q 000951 1149 LHYLLKLIYQ 1158 (1211)
Q Consensus 1149 ~~~~~~~~~~ 1158 (1211)
||.++|+||.
T Consensus 12 lhe~ikli~n 21 (23)
T PF08225_consen 12 LHEVIKLINN 21 (23)
T ss_pred HHHHHHHHhc
Confidence 5888888874
No 418
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.77 E-value=6.8e+02 Score=30.47 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000951 388 YTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYR 448 (1211)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 448 (1211)
|..-+..+..+++.. ....++++.+-+-.+...-..++..|.+.|..+.|.++.+.+-.
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444444322 44444444443333444455566666666666666666655433
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.56 E-value=4.5e+02 Score=28.30 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=93.0
Q ss_pred CCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHhhH
Q 000951 345 GLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGL-LDEAMQLFNKMFKDGLNPDLITF 423 (1211)
Q Consensus 345 g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~ 423 (1211)
|+.++...--+++.+.. ...|.+|..+....+=+.+.+.|- ..=|.++|.+.+. ....
T Consensus 141 ~F~e~Er~KLA~~Tal~---------------l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~------Ek~i 199 (412)
T KOG2297|consen 141 LFEENERKKLAMLTALL---------------LSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV------EKDI 199 (412)
T ss_pred ccCHHHHHHHHHHHHHH---------------HhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh------hccH
Confidence 45666665555554432 233544433333333345555553 3456778888764 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHH
Q 000951 424 SVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMG-----------KVTEAMKVYAVMNRNAQGSDHFT 492 (1211)
Q Consensus 424 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~ 492 (1211)
+.++.++-+.+.-+.-.++| +|+..+-......+...| ....+.+-++
T Consensus 200 ~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq------------- 258 (412)
T KOG2297|consen 200 NDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQ------------- 258 (412)
T ss_pred HHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 77888887766666666654 777766555554444433 2222222222
Q ss_pred HHHHHHHHHcCCChHHHHHHHH-HHHhcCCCCCH----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHH
Q 000951 493 CNMLVASLCKGGKVCEAEDYVG-HMKRIGVVPNS----ITFDCMIDGYGTLGDG-LKAFSMFDEMVKLGHHPSIFTYGSL 566 (1211)
Q Consensus 493 ~~~li~~~~~~g~~~~A~~~~~-~~~~~g~~p~~----~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l 566 (1211)
..|..-......+++...... +|.+.+ -|+. +.|..++++---+.+- .-|.+.++.+ .+|..|
T Consensus 259 -~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPL 327 (412)
T KOG2297|consen 259 -KELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPL 327 (412)
T ss_pred -HHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHH
Confidence 223333334444555555443 344433 3454 3577776654322111 1122223322 356778
Q ss_pred HHHHHcCCCHHHHH
Q 000951 567 LKGLCKGGNLKEAK 580 (1211)
Q Consensus 567 l~~~~~~g~~~~A~ 580 (1211)
+.++|..|+.+...
T Consensus 328 L~af~s~g~sEL~L 341 (412)
T KOG2297|consen 328 LAAFCSQGQSELEL 341 (412)
T ss_pred HHHHhcCChHHHHH
Confidence 88888888766543
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.38 E-value=49 Score=23.94 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=16.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 000951 777 LILGFCETGMLEVGFKFLKKMIAE 800 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~~~ 800 (1211)
+..+|...|+.+.|.+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556777777777777777777653
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.67 E-value=94 Score=26.97 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
++......|++++|+..++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555666666555555554
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.60 E-value=2e+02 Score=32.86 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=11.5
Q ss_pred HHhcCcHHHHHHHHHHHHHC
Q 000951 816 CCEAGEMGKAFDLFNIMNML 835 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~ 835 (1211)
+...++|..|.++++.+...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 34556666666666666553
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.25 E-value=5.5e+02 Score=29.00 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh-hhCCHHHHHHHHHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC-KEAKFVDALKLKGTME 973 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~-~~g~~~~A~~~~~~~~ 973 (1211)
..+..+.+.|-+.-|+++.+-++.++|.-|+.....+++.|+ +.++++--+++++...
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 336678888999999999999999987768877777777664 5677777777766543
No 424
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.14 E-value=5.5e+02 Score=28.93 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCccCh--hhHHHHHHHHHhcccchHH-HHHHHHHHHHcC
Q 000951 988 ISGLCANGDVMPAFELYEEMKHKGLCPNS--TTYSVLIDAISKKENNLVK-GEILLKDIQERG 1047 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~~-a~~~~~~l~~~~ 1047 (1211)
..-+.+.|-+.-+.+++..+.+.|++.-. -+.+.+-+...+.+-..++ +|.+....-.+|
T Consensus 344 k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDG 406 (493)
T KOG2581|consen 344 KDKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDG 406 (493)
T ss_pred HHHHhhCCcchHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhc
Confidence 34466778888888888888888887644 3344444444444333333 666554433333
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.44 E-value=5.5e+02 Score=28.46 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 000951 683 KAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHG 745 (1211)
Q Consensus 683 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 745 (1211)
+.-+.+++++++.. +.+...+...+..+.+..+.++..+.++++... .| +...|...+..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHH
Confidence 34445555555552 334445555556666666666666666666643 33 45555555443
No 426
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.99 E-value=2.8e+02 Score=36.17 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCCCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHc-----C--C
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGLTPK--CTQYITLINGMCRVGNFQGAFKLKDEMEAL-----G--I 907 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~--~ 907 (1211)
..|..+...+.+.|+.++|+..-.++.- .|.++. ...|..+.-.....++...|+..+.++... | .
T Consensus 974 ~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~h 1053 (1236)
T KOG1839|consen 974 SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDH 1053 (1236)
T ss_pred HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCC
Confidence 3445555555555555555554433221 223321 244445554444555555555555555321 1 1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
||...+...+..++...++++-|+++++.+..
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22333334444444444555555555555544
No 427
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.56 E-value=6.1e+02 Score=28.75 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=57.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---hcchh
Q 000951 783 ETGMLEVGFKFLKKMIAEGTMVDC-FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR---IAAFQ 858 (1211)
Q Consensus 783 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~ 858 (1211)
..|+...|+..++.+.... .++. .+ .+...+++++-.. ....+-..+..+++++.+ -.+.+
T Consensus 202 s~GD~R~aLN~LE~~~~~~-~~~~~~~-------------~~~l~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 202 SNGDARRALNLLELAALSA-EPDEVLI-------------LELLEEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred cCchHHHHHHHHHHHHHhc-CCCcccC-------------HHHHHHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCcC
Confidence 4577777777777766542 2221 11 2222223332221 124455667777777754 46788
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 000951 859 ESHFVLRGMAEKGLTPKCTQYITLINGMCRVGN 891 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 891 (1211)
.|+-++.+|++.|-+|....-..+.-++..-|.
T Consensus 267 AALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 267 AALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 999999999998888877766666666666654
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.51 E-value=1.2e+02 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
+...++......|++++|...++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566667777888888887777753
No 429
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.27 E-value=2.7e+02 Score=29.61 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=24.1
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHH-----cCCHHHHHHHH
Q 000951 569 GLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK-----SGNLWEAIVLL 618 (1211)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 618 (1211)
.|.+.+....+.++-...++.+.+-+..-|.+++..|.. .|.+++|.++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 345555555555555555444433333334444444433 35555555543
No 430
>PRK12798 chemotaxis protein; Reviewed
Probab=38.65 E-value=6.4e+02 Score=28.72 Aligned_cols=152 Identities=11% Similarity=0.049 Sum_probs=88.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChH
Q 000951 714 MGNMMMANDLLSTMRSRKLCPSLATYNILLHG-YSKKKDLLMCSMLLNTMKMEGLLPDK----LTCHSLILGFCETGMLE 788 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~ 788 (1211)
.|+.+++.+.+..+.....++....|..|+.+ .....++.+|+++|+++.- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 78999999999888766666677788888765 4456789999999998775 44533 34444556667888888
Q ss_pred HHHHHHHHHHHcCCCCCHhh---HHHHHHHHHhcCcHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhhcchhhHHHHH
Q 000951 789 VGFKFLKKMIAEGTMVDCFT---FNVLMRKCCEAGEMGKAFDLFNIMNM-LGVVPDTNTQDAIIMGLKRIAAFQESHFVL 864 (1211)
Q Consensus 789 ~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 864 (1211)
++..+-...... +..++.. +..+...+.+.++-..- +.+..++. .........|..+...-.-.|+.+-|...-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 877776665554 2222211 11222233333211111 11222222 111112455666666666667776666666
Q ss_pred HHHHH
Q 000951 865 RGMAE 869 (1211)
Q Consensus 865 ~~~~~ 869 (1211)
++++.
T Consensus 281 ~~A~~ 285 (421)
T PRK12798 281 ERALK 285 (421)
T ss_pred HHHHH
Confidence 66665
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.34 E-value=9.6e+02 Score=30.62 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcCCCH--HHHHHHHHHhhhCCCCccHHHH----
Q 000951 528 FDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPS---IFTYGSLLKGLCKGGNL--KEAKRFLNSLHHIPSAVDTVAY---- 598 (1211)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~---- 598 (1211)
|..|+..|...|+.++|++++.+..+..-.-| ...+..++.-+.+.+.. +-..+.-....+..+.....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66677777777777777777777665210001 11122233333333322 3333322222222211110000
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 000951 599 --------NTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCR 642 (1211)
Q Consensus 599 --------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 642 (1211)
..-+-.|+.....+-++..++.+....-.++..-.+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01233455566666777777777765555566666666666553
No 432
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.16 E-value=2.4e+02 Score=33.50 Aligned_cols=94 Identities=6% Similarity=0.083 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL------TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD-CFTF 809 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 809 (1211)
..||...+ ..+..+|..+++.|..-... +..|.. ....+...|.+..+.|.|.++++++.+ .+|. +.+-
T Consensus 356 iLWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQ 431 (872)
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHH
Confidence 34444433 34567788888877765542 322332 234555667777788888888888777 3333 3333
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~ 834 (1211)
-....+....|+-++|+........
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3334456667777777777766653
No 433
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.94 E-value=78 Score=32.26 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=44.1
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALG 906 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 906 (1211)
+..+.++.+.|.++|.+++. +.|+. ..|..++....+.|+.+.|.+.|++.++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567788888888888887 77865 778888888888888888888888888764
No 434
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.90 E-value=1.3e+02 Score=31.94 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=43.8
Q ss_pred HHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 851 LKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
..+.|+.++|..+|..++. +.|+. ......+......++.-+|-.+|-+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 5578999999999999998 88864 77777777777778888898998888765
No 435
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.76 E-value=3.7e+02 Score=27.95 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC
Q 000951 780 GFCETGMLEVGFKFLKKMIAEGTM 803 (1211)
Q Consensus 780 ~~~~~g~~~~A~~~~~~~~~~~~~ 803 (1211)
-+...|+++.|+++.+.+++.|.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 345788888888888888888765
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.73 E-value=1.8e+02 Score=26.99 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHH
Q 000951 859 ESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKD 900 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~ 900 (1211)
++.++|+.|..+|+--.. .-|..-+..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444443322 233333444444444444444443
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.67 E-value=5.5e+02 Score=27.38 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=51.4
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHH----HCCCCCChh-hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMN----MLGVVPDTN-TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC---- 876 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~---- 876 (1211)
..++..++.-|++.++.+.+.++..+.. ..|.+-|.. +--.|+-.|....-.+|-++..+.++++|-+-+-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4456666677777777777766555443 334433322 2233444555555567777777777776655432
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
.+|..+ -+....++.+|-.++-..+
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 223222 1223345666666665554
No 438
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.89 E-value=69 Score=20.50 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
|+.++|..+|++++...+. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~-~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK-SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC-ChHHHHHHHH
Confidence 3566677777777765543 5666655443
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.31 E-value=3.9e+02 Score=27.79 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCC
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVV 838 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~ 838 (1211)
-....|+++.|+++.+-+++.|.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 345789999999999999887754
No 440
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.58 E-value=8.4e+02 Score=28.28 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHcC--C--CC-CHhhHH--------HHHHHHHhcCcHHHHHHHHHHHHH---CCCCCChh-----
Q 000951 784 TGMLEVGFKFLKKMIAEG--T--MV-DCFTFN--------VLMRKCCEAGEMGKAFDLFNIMNM---LGVVPDTN----- 842 (1211)
Q Consensus 784 ~g~~~~A~~~~~~~~~~~--~--~~-~~~~~~--------~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----- 842 (1211)
.|-+++|.++-++++..- . .+ ...+.+ .++-+-.-.|++.+|++-...|.+ ....|-..
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 456677777777766541 1 11 111211 122233356899999988877754 22122111
Q ss_pred -hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhH--HHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCch-----HH
Q 000951 843 -TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQ--YITLINGMCRVGNFQGAFKLKDEMEAL-GISSSD-----VA 913 (1211)
Q Consensus 843 -~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~-~~~~~~-----~~ 913 (1211)
....++--+..-+.+++|+.-|..+.+..-.-|..+ -..++..|.+.|+-+.-.+..+.+-.. .++... .+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~ 447 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASI 447 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHH
Confidence 112223333456889999999999887433334333 345677888888877766666655311 111111 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC-----HHHHHHHHHHhhhhCCHHHHHHHHH-HHHhcCCCCchHH
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT-----IATFTTLIHKFCKEAKFVDALKLKG-TMELSGVKLDVVS 983 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~-----~~~~~~L~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~ 983 (1211)
+..-+-.....+++.||..++.+.+++.--.| .-....|+.+....|+..|+.+..+ .|.-..--||..+
T Consensus 448 ~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 448 LYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 33344455678999999999999988641112 2334456777788899999988654 3332222467653
No 441
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=1.1e+03 Score=29.64 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 494 NMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEM 551 (1211)
Q Consensus 494 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (1211)
.+........|+.++...+-.-+. -|..++.-+++.+.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445556677766665444443 2566778888889999988877653
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=9.6e+02 Score=28.56 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=59.6
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCC--hhHHHHHHHHHH-hcCChhhHHHHHHHHHHc---CCCCchHHHHHHHHHHHh
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPK--CTQYITLINGMC-RVGNFQGAFKLKDEMEAL---GISSSDVAESAMVRGLAH 923 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~--~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 923 (1211)
.+.+.|.+.-|.++.+-+++ ++|+ +.....+++.|. +..+|+=-+++++..... ..-|+-..-.+++..|.+
T Consensus 351 ~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 45577888899998888888 6664 566666777666 666776666666666432 223444444455555555
Q ss_pred cCC---HHHHHHHHHHHHhCCc
Q 000951 924 CGK---VEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 924 ~g~---~~eA~~~~~~~~~~~~ 942 (1211)
... .+.|+..+.+++.+-|
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc
Confidence 444 6778888888888754
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.75 E-value=4.4e+02 Score=30.08 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 000951 676 LFKAGQSKAAMHISKIMDKEGVYPDTI--AFNAVMDGFSR--MGNMMMANDLLSTMRS 729 (1211)
Q Consensus 676 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~ 729 (1211)
+.+.+++..|.+++..+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555666666666665543 333332 33334444433 4555666666666553
No 444
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=30.66 E-value=7.1e+02 Score=26.85 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000951 241 IEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKR-MITPNEVTYNTLINGFVKEGKIQVASRVF 303 (1211)
Q Consensus 241 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 303 (1211)
-.++..+...+|..++..+++.+-.++++.-... ++..|...|..+|..-.+.|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3444445555555555555555555555544433 34445555555555555555544444433
No 445
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.58 E-value=90 Score=38.21 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=38.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHH
Q 000951 782 CETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESH 861 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 861 (1211)
..+|+.+.|++...++ .|..+|..|+..-..+|+.+-|.-.|++... |.-|...|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 3556666666554443 2445666666666666666666666665542 333334445555555544
Q ss_pred HHHHH
Q 000951 862 FVLRG 866 (1211)
Q Consensus 862 ~~~~~ 866 (1211)
++-+-
T Consensus 719 Km~~i 723 (1202)
T KOG0292|consen 719 KMMKI 723 (1202)
T ss_pred HHHHH
Confidence 44443
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.52 E-value=9.6e+02 Score=29.39 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----------hhHHHHHHHHHhcCcHH
Q 000951 757 MLLNTMKMEGLLPDK---LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDC----------FTFNVLMRKCCEAGEMG 823 (1211)
Q Consensus 757 ~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~ 823 (1211)
..+.+|...--+|+. .+...++..|....+|+.-+++.+.+.+ + ||. +.|.--++-=.+-|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~--i-P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR--I-PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh--C-cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 456667665344543 3556678889999999999999998876 3 321 11111112222456777
Q ss_pred HHHHHHHHHHHCC--CCCChhhHHHHHH---------HHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 000951 824 KAFDLFNIMNMLG--VVPDTNTQDAIIM---------GLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG 890 (1211)
Q Consensus 824 ~A~~~~~~~~~~~--~~~~~~~~~~l~~---------~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 890 (1211)
+|+...-.+.+.. +.|| .|...+. .|...+..+.|+.+|+++.+ ..|...+=.+++..+...|
T Consensus 261 kAL~~~l~lve~eg~vapD--m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPD--MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCc--eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 8888776665532 3344 2222222 34455677889999999988 7887644444444444444
No 447
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.09 E-value=52 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=21.8
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 000951 152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINV 184 (1211)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 184 (1211)
+.|.-.+|..+|..|+++|.+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346667788888888888888775 5555543
No 448
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.71 E-value=7.6e+02 Score=26.83 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=28.0
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKI 691 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 691 (1211)
-.+.|+..+|.+.|+.+.+..++..-......|+.++....-+.+...++.+
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888887776532111122344555555555444444444333
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.49 E-value=2e+02 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
|..++......|.+++.+.+|++++..|..|-...-..++++
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 444444444444444445555544444444444433333333
No 450
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.09 E-value=3.7e+02 Score=23.10 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhccc
Q 000951 978 KLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKEN 1031 (1211)
Q Consensus 978 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~ 1031 (1211)
+|+ ....+.++..+...|++++|.+.+-.+.++.-..+. .....++..+...|.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 674 458899999999999999999998887664332222 343444444443343
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.00 E-value=1.4e+02 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951 524 NSITFDCMIDGYGTLGDGLKAFSMFDEMV 552 (1211)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (1211)
|..---.+|.+|.+.|++++|.+.++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455666666666666666666554
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.92 E-value=1.4e+02 Score=23.47 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 962 FVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 962 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+++..++.+.++.. ..|......++.+|...|++++|.++.+.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444443 44555666677777888888888887776643
No 453
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.52 E-value=1.1e+02 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=12.9
Q ss_pred HhCCChhHHHHHHHHHHH
Q 000951 992 CANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 992 ~~~g~~~~a~~~~~~~~~ 1009 (1211)
...-.|+.|.++.++|.+
T Consensus 50 ~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 50 GVGSQWERARRLQQKMKT 67 (79)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 344578888888888865
No 454
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.89 E-value=8e+02 Score=26.51 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=34.2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 000951 382 SISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKD-GLNPDLITFSVLINGFCKVGMTRKAKAV 442 (1211)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~ 442 (1211)
.++..+-..++..++..+++..-.++++..... +..-|...|..+|......|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344445555666666666666666666555443 3444556666666666666665444333
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.86 E-value=3.4e+02 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951 388 YTSVIDGLCKCGLLDEAMQLFNKMFK 413 (1211)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~ 413 (1211)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666655554
No 456
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.80 E-value=1.3e+03 Score=29.00 Aligned_cols=78 Identities=19% Similarity=0.104 Sum_probs=43.8
Q ss_pred hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-----hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNF-----QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
+.++++.|+.++.+|++.|.+|....-..+..+...-|.- .-|...++-....|.+-........+..++.+.+-
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKS 349 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKS 349 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCc
Confidence 3466777777777777777777655444444455444532 23344444445556665555555555555555554
Q ss_pred HHH
Q 000951 928 EEA 930 (1211)
Q Consensus 928 ~eA 930 (1211)
..+
T Consensus 350 ns~ 352 (725)
T PRK13341 350 NSV 352 (725)
T ss_pred cHH
Confidence 444
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.15 E-value=1.5e+03 Score=29.56 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HH
Q 000951 633 YTILLAGLCRKGKVVSALLFFEKVVSKRTFSPN----NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTI----AF 704 (1211)
Q Consensus 633 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~ 704 (1211)
|...+..+-+.+-.+.+.++-..+++. ++++ ..+++++.+.....|.+-+|.... +. .||.. +.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcL 1057 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHH
Confidence 455666777788888888888887775 2333 345667777777778777775433 22 34432 34
Q ss_pred HHHHHHHHhcCChHH------------HHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 000951 705 NAVMDGFSRMGNMMM------------AND-LLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLL 759 (1211)
Q Consensus 705 ~~li~~~~~~g~~~~------------A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (1211)
..++..+..+|+++. ... +++..-....--....|+.|-.-+...+|+.+|-.+.
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 455666666666543 223 2222222111112334555555566677777765543
No 458
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=1.3e+03 Score=28.56 Aligned_cols=253 Identities=15% Similarity=0.089 Sum_probs=125.1
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 000951 570 LCKGGNLKEAKRFLNSLHHIPSAV-----DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKG 644 (1211)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 644 (1211)
....|+..+|.+++.-.+-....+ .--...+| ++...|......+.+.+.++..-.+....=..|.-++...|
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAl--GLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYAL--GLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCCCCccccchhhhh--hccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 345678888888887765442111 11123333 34444444557777766665432222222233444455544
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHHcCCH-HHHHH-HHHHHHhCCCCCCHHHHH--HHHHHHHhcCChH
Q 000951 645 KVVSALLFFEKVVSKRTFSPNNVM--FTCLVDGLFKAGQS-KAAMH-ISKIMDKEGVYPDTIAFN--AVMDGFSRMGNMM 718 (1211)
Q Consensus 645 ~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~-~~A~~-~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~ 718 (1211)
.-. .++|+++.+.- ...+.++ -..+.-++...|.+ .+|++ ++....+.. -..+.. ++.-++.--|+-+
T Consensus 445 Sa~--~eiYe~lKevL-y~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe 518 (929)
T KOG2062|consen 445 SAN--EEIYEKLKEVL-YNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQE 518 (929)
T ss_pred ccc--HHHHHHHHHHH-hccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhh
Confidence 332 23444443321 1112211 11222233333332 22322 333332211 111222 2233455577778
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 000951 719 MANDLLSTMRSRKLCP--SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKK 796 (1211)
Q Consensus 719 ~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 796 (1211)
+|..+.+++.... .| -.....+++.+|+..|+.....+++.-+... .+-|..-+.....++.-..+++....+..-
T Consensus 519 ~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 519 DADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred hhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 8999999987643 33 2233456677888888876666666555532 222333333344455555677777777766
Q ss_pred HHHcCCCCCHhh--HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 000951 797 MIAEGTMVDCFT--FNVLMRKCCEAGEMGKAFDLFNIMNM 834 (1211)
Q Consensus 797 ~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 834 (1211)
+.+. ++|.+.. ..+|+-+|+-.| ..+|+.+++-|..
T Consensus 597 Lses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred Hhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 6554 4555433 334444555555 4678888888864
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=8e+02 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=12.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 000951 777 LILGFCETGMLEVGFKFLKKMI 798 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~ 798 (1211)
++..+.+.|++.+|+...+.++
T Consensus 131 li~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHH
Confidence 4455566666666665554443
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=25.25 E-value=2.2e+02 Score=21.08 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=14.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 000951 187 VEGKLKKAGYLLRKMEESGYVPNIVTYNTL 216 (1211)
Q Consensus 187 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 216 (1211)
+.|-..++..++++|.+.|+.-+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555555444444443
No 461
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.24 E-value=1.2e+02 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHHHh
Q 000951 924 CGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 924 ~g~~~eA~~~~~~~~~ 939 (1211)
.|++++|+++|.++++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3445555555554444
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=8.7e+02 Score=26.02 Aligned_cols=68 Identities=7% Similarity=-0.050 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCC
Q 000951 280 EVTYNTLINGFVKEGKIQVASRVFDEMS----MLNFSPNSITYNELI-DGHCCKGNFKEAFRLLAMMEEMGLR 347 (1211)
Q Consensus 280 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~ 347 (1211)
...+..+...||+.++.+.+.++.++.. ..|.+.|+...-..+ -.|....-+++-++..+.|.+.|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4456666777777777777776665543 335455554333222 2233333456666666677666643
No 463
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.96 E-value=70 Score=29.60 Aligned_cols=29 Identities=31% Similarity=0.608 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 000951 398 CGLLDEAMQLFNKMFKDGLNPDLITFSVLIN 428 (1211)
Q Consensus 398 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 428 (1211)
.|.-.+|..+|.+|+++|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444556666666666666655 4555554
No 464
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.69 E-value=1.2e+02 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=10.1
Q ss_pred hcchhhHHHHHHHHHH
Q 000951 854 IAAFQESHFVLRGMAE 869 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~ 869 (1211)
.|++++|+.+|.++++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4666666666666655
No 465
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=8.8e+02 Score=25.75 Aligned_cols=123 Identities=9% Similarity=-0.024 Sum_probs=85.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHH-HH
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC-GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFV-DA 965 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~-~A 965 (1211)
+...-+.|+++.+.++..+ +.+-.+|.---.++... .++.+-++.++++++.+|+ |-.+|..--.+.-..|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccch
Confidence 3445567777777777653 55555665443444333 3488889999999999887 9999988888888888877 55
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCc
Q 000951 966 LKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLC 1013 (1211)
Q Consensus 966 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 1013 (1211)
+++.+.|... -..+.-+|..--+++..-+.|+.-..+-.++++..+.
T Consensus 133 Lef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 133 LEFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HHHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 5555555543 1234457777777777778899988888888775554
No 466
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.79 E-value=7.6e+02 Score=24.86 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCCCChHHHHHHHH-HHHhcC--CHHHHHHHHHHHHHC
Q 000951 288 NGFVKEGKIQVASRVFDEMSML--NFSPNSITYNELID-GHCCKG--NFKEAFRLLAMMEEM 344 (1211)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~-~~~~~g--~~~~A~~~~~~m~~~ 344 (1211)
-.....|++++|..-++++.+. .++.-...|..+.. ++|..+ .+-+|.-++.-....
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3345667777777777665432 00111233444444 555554 356777776666554
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.77 E-value=1.1e+03 Score=26.92 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH--HC----CCC-CChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMN--ML----GVV-PDTNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~----~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
+...|++.++-.|++..|+++.+.+. +. .+. -...++..++-+|...+++.+|+..|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777766441 00 111 1245677788888888888888888888764
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.66 E-value=2.5e+02 Score=20.79 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 000951 116 LREGMVEYALETFQLMGFRGFNPSVYTCNMMLS 148 (1211)
Q Consensus 116 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 148 (1211)
-+.|...++..++++|...|+.-+...++.++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666777777777777777766666666554
No 469
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.50 E-value=1.2e+03 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=15.8
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 000951 209 NIVTYNTLLNWYCKKGRYKAAFKLIDCMAS 238 (1211)
Q Consensus 209 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (1211)
|+..|...+..+-+.+.+.+...+|.+|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~ 133 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLA 133 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 555555555444444445555555555544
No 470
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=23.42 E-value=5.9e+02 Score=24.98 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-----hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 856 AFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNF-----QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
+.+.|+-++..|++.|-+|....-..++.+...-|.- ..|...++.....|.+-........+..++.+.+
T Consensus 3 D~dAAlywlarml~~GeDp~~i~RRL~i~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La~aviyLa~apK 78 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDPRFIARRLIIIASEDIGLADPQALSIAVAAYQAVERIGMPEARIPLAQAVIYLALAPK 78 (168)
T ss_dssp -HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTGGGSTCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHS--
T ss_pred ChHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHhccc
Confidence 4566777777777777666665555555555554432 2344444444445555444444333333333333
No 471
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.26 E-value=6.6e+02 Score=29.68 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=5.0
Q ss_pred HHHHHHhCCC
Q 000951 407 LFNKMFKDGL 416 (1211)
Q Consensus 407 ~~~~m~~~g~ 416 (1211)
+++.+++.|.
T Consensus 298 iv~~Ll~~g~ 307 (480)
T PHA03100 298 IFKLLLNNGP 307 (480)
T ss_pred HHHHHHhcCC
Confidence 4445555553
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.11 E-value=1e+03 Score=26.12 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----hCCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 000951 285 TLINGFVKEGKIQVASRVFDEMS----MLNFSPNSITYNELIDGHC-CKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 285 ~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g 345 (1211)
....-||+-|+-+.|.+.+.+.. ..|.+.|++-+..-+..+. ...-+.+-++-.+.+.+.|
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34455666677666666665433 3355556555544443322 2222334444444444444
No 473
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.85 E-value=1.8e+02 Score=29.34 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=14.9
Q ss_pred CCCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 872 LTPKCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
..|+...|..++.++...|+.++|....+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 474
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.82 E-value=5.7e+02 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHH
Q 000951 860 SHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLK 899 (1211)
Q Consensus 860 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 899 (1211)
..++|.-|..+|+--.. .-|...+..+...|++.+|.++|
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444443322 22333344444444444444443
No 475
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.81 E-value=1e+03 Score=26.08 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000951 401 LDEAMQLFNKMFKDGL----NPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMK 476 (1211)
Q Consensus 401 ~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 476 (1211)
.++|.+.|+++...+. ..+......+.....+.|..+.-..++... .. .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~-~~--~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELY-KN--STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHH-HT--TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHH-hc--cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455555555554311 123333333444444455433322232222 22 2344445555555555556555556
Q ss_pred HHHHHHHc
Q 000951 477 VYAVMNRN 484 (1211)
Q Consensus 477 ~~~~~~~~ 484 (1211)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66655553
No 476
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=22.79 E-value=6.8e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 000951 214 NTLLNWYCKKGRYKAAFKLIDCM 236 (1211)
Q Consensus 214 ~~li~~~~~~g~~~~A~~~~~~m 236 (1211)
|.+++-....+++.-...+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 44444444444444444444443
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.60 E-value=1.2e+03 Score=26.86 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHhHHHHHH
Q 000951 318 YNELIDGHCC---KGNFKEAFRLLAMMEEMGLRPNEVSYGALL 357 (1211)
Q Consensus 318 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 357 (1211)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444444443 367777777777777777666544433333
No 478
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.46 E-value=1.4e+02 Score=32.09 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 000951 284 NTLINGFVKEGKIQVASRVFDEMSMLNF 311 (1211)
Q Consensus 284 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 311 (1211)
+.-|....+.|++++|+.+++|.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555566666666666666555553
No 479
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.42 E-value=1.2e+03 Score=30.48 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=13.3
Q ss_pred HHHHHHHhcC--ChHHHHHHHHHHHH
Q 000951 776 SLILGFCETG--MLEVGFKFLKKMIA 799 (1211)
Q Consensus 776 ~l~~~~~~~g--~~~~A~~~~~~~~~ 799 (1211)
.++.+|.+.+ ++++|+....++.+
T Consensus 817 ~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 817 PILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 3445555554 56666666655554
No 480
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=1.1e+03 Score=26.00 Aligned_cols=65 Identities=17% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 000951 739 YNILLHGYSKKKDLLMCSMLLNTMKM----EGLLPDKLTCHS-LILGFCETGMLEVGFKFLKKMIAEGTM 803 (1211)
Q Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 803 (1211)
+.....-|++-|+.+.|.+.+++..+ .|.+-|.+-+.. ++-.|....-..+-++..+.+++.|-.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 33344445555555555544443322 234444433321 222333333334444444444444433
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.20 E-value=3.7e+02 Score=25.66 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 000951 760 NTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG 820 (1211)
Q Consensus 760 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 820 (1211)
..+.+.|++++..-. .++..+...+..-.|.++|+++.+.+...+..+...-++.+...|
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334455555544332 244555555555667777777776655544443333334444444
No 482
>PRK14700 recombination factor protein RarA; Provisional
Probab=22.19 E-value=1e+03 Score=25.87 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHH---hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh-----hHHHHHHHHHHcCCCCch
Q 000951 840 DTNTQDAIIMGLK---RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQ-----GAFKLKDEMEALGISSSD 911 (1211)
Q Consensus 840 ~~~~~~~l~~~~~---~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~-----eA~~~~~~~~~~~~~~~~ 911 (1211)
+-..+..+++++. +-.+.+.|+-++.+|++.|-+|....-..++-++..-|.-+ .|...++.....|.|-..
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~ 201 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGR 201 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 3444555666664 34678889999999999998998887777777777777533 333444444444544333
Q ss_pred HHH
Q 000951 912 VAE 914 (1211)
Q Consensus 912 ~~~ 914 (1211)
.+.
T Consensus 202 i~L 204 (300)
T PRK14700 202 LVL 204 (300)
T ss_pred HHH
Confidence 333
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.58 E-value=7.7e+02 Score=29.20 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=15.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMN 833 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~ 833 (1211)
.++.-|.+.+++++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45556777777777777776653
No 484
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.57 E-value=1.2e+03 Score=26.44 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=13.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 000951 738 TYNILLHGYSKKKDLLMCSMLLNTMK 763 (1211)
Q Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 763 (1211)
.+..+++-|...|+.+.|++.|.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhh
Confidence 34445555555555555555555543
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.30 E-value=4.3e+02 Score=24.51 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHH
Q 000951 964 DALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus 964 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
++.++|..|...++--... -|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455566666555554444 33444445566666666666654
No 486
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=21.15 E-value=7.6e+02 Score=32.55 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=96.5
Q ss_pred HHhhcchhhHHH------HHH-HHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCC--CCchHHHH
Q 000951 851 LKRIAAFQESHF------VLR-GMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEME-----ALGI--SSSDVAES 915 (1211)
Q Consensus 851 ~~~~g~~~eA~~------~~~-~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~-----~~~~--~~~~~~~~ 915 (1211)
....|.+.+|.+ ++. .|.. ..|+. ..|..|+..+.+.|+.++|+..=.++. -.|. +.+...|.
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 334455555555 555 2333 55664 789999999999999999998877662 1222 22344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----Cc-cc-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC---CCC----ch
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRM-----RL-VP-TIATFTTLIHKFCKEAKFVDALKLKGTMELSG---VKL----DV 981 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~-----~~-~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~---~~p----~~ 981 (1211)
.+.......++...|+..+.+++.. ++ .| .+.+...+..++...++++.|+...+...+.. ..| ..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 7776667777888888887777652 22 22 44455666666666678888887766443221 112 22
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHH
Q 000951 982 VSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 982 ~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
..+..++..+...++...|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 3556666677777777777666554
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=3.6e+02 Score=28.65 Aligned_cols=62 Identities=15% Similarity=-0.056 Sum_probs=47.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
=..+.+.++++.|+...++.+..+|. |+.-+..-|.+|.+.|-+.-|++-+....+. -|+..
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~ 249 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDP 249 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCch
Confidence 34677788888888888888888776 8888888888888888888888877664444 45433
No 488
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.11 E-value=1.2e+03 Score=26.10 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 290 FVKEGKIQVASRVFDEMSMLNFSPNSITYNEL----IDGHCCKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 290 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g 345 (1211)
+.+.++..-|......+.++++..=..+|.++ |.-..+.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 45667778888888887776555445556554 333345567777777777777655
No 489
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=21.08 E-value=1.1e+03 Score=25.62 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHH
Q 000951 456 IIYSTLIYYFCKMGKVTEA 474 (1211)
Q Consensus 456 ~~~~~li~~~~~~g~~~~A 474 (1211)
.+|..++.++|..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466677777777766544
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.92 E-value=9.8e+02 Score=25.09 Aligned_cols=40 Identities=5% Similarity=-0.056 Sum_probs=19.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 000951 636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGL 676 (1211)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 676 (1211)
++...-+.|++++...+++++.+.+ ...+..-.+.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH
Confidence 3444555666666666666666643 233333334444333
No 491
>PRK12798 chemotaxis protein; Reviewed
Probab=20.89 E-value=1.3e+03 Score=26.45 Aligned_cols=154 Identities=12% Similarity=-0.022 Sum_probs=89.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCcH
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLPDKLTCHSLIL-GFCETGMLEVGFKFLKKMIAEGTMVDC----FTFNVLMRKCCEAGEM 822 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 822 (1211)
-.|+.++|.+.+..+...-..+....+..|+. ......+..+|+++|+.+.- ..|.. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 36888888888887765545556666766764 34556788899999998876 33432 2333334456778888
Q ss_pred HHHHHHHHHHHHCC-CCCChhhH-HHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHH
Q 000951 823 GKAFDLFNIMNMLG-VVPDTNTQ-DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKL 898 (1211)
Q Consensus 823 ~~A~~~~~~~~~~~-~~~~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~ 898 (1211)
+++..+-.+....- ..|-..-| ..+..++.+.++-.. ...+..++. -++|+. ..|..++..-...|+.+-|.-.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls-~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILS-FMDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHH-hcCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 87776655554321 12222222 222223333332211 122444443 144543 6777777777777887777777
Q ss_pred HHHHHHc
Q 000951 899 KDEMEAL 905 (1211)
Q Consensus 899 ~~~~~~~ 905 (1211)
-+++...
T Consensus 280 s~~A~~L 286 (421)
T PRK12798 280 SERALKL 286 (421)
T ss_pred HHHHHHh
Confidence 7777654
No 492
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=20.87 E-value=2e+02 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 000951 248 YNMFIDDLCRNNRSAKGYLLLKNMRKRMIT 277 (1211)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 277 (1211)
|+..|....+.||+++|+.++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=9e+02 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+|++.+-+++.. +...+-...+.|++++|...++++.
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455555555554 4444445556777777777777664
Done!