Query 000951
Match_columns 1211
No_of_seqs 880 out of 5468
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.2E-37 7.6E-42 382.6 41.7 485 523-1025 82-593 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-37 1.4E-41 380.4 42.7 503 152-692 65-576 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-27 1.2E-31 273.5 48.8 379 601-995 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4E-27 1.4E-31 273.1 45.9 378 636-1030 5-387 (388)
5 1xi4_A Clathrin heavy chain; a 100.0 9.9E-22 3.4E-26 240.3 86.1 841 106-1041 362-1380(1630)
6 1xi4_A Clathrin heavy chain; a 100.0 2.4E-21 8.4E-26 236.8 88.9 731 152-967 468-1376(1630)
7 4g26_A Pentatricopeptide repea 100.0 4.8E-28 1.6E-32 284.2 25.2 204 159-362 9-222 (501)
8 4g26_A Pentatricopeptide repea 100.0 8.3E-28 2.8E-32 282.2 25.4 205 193-397 8-222 (501)
9 2gw1_A Mitochondrial precursor 99.9 2.9E-23 9.8E-28 250.9 41.0 271 736-1016 186-482 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.9E-23 6.5E-28 252.4 39.0 273 701-982 186-483 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 6.6E-22 2.3E-26 234.4 41.9 324 594-953 25-370 (450)
12 3fp2_A TPR repeat-containing p 99.9 4E-22 1.4E-26 242.3 39.3 433 526-982 26-496 (537)
13 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.9E-26 232.3 42.0 328 666-1006 26-405 (450)
14 3fp2_A TPR repeat-containing p 99.9 4.9E-22 1.7E-26 241.5 39.3 427 560-1010 25-491 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 5.1E-19 1.7E-23 202.2 40.4 338 595-991 3-350 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 5.7E-19 1.9E-23 201.8 40.8 207 813-1028 127-352 (359)
17 2xm6_A Protein corresponding t 99.9 4.6E-18 1.6E-22 203.0 49.8 351 594-975 38-432 (490)
18 2xm6_A Protein corresponding t 99.9 1.2E-17 4.1E-22 199.4 51.2 369 559-958 38-452 (490)
19 3hym_B Cell division cycle pro 99.8 6.9E-19 2.3E-23 198.5 29.9 286 700-996 21-320 (330)
20 3hym_B Cell division cycle pro 99.8 2.8E-18 9.5E-23 193.5 32.2 292 663-963 19-322 (330)
21 2ooe_A Cleavage stimulation fa 99.8 9.3E-17 3.2E-21 193.8 46.5 131 524-658 12-158 (530)
22 2ooe_A Cleavage stimulation fa 99.8 1.2E-16 4.3E-21 192.7 44.5 420 559-1009 12-491 (530)
23 1fch_A Peroxisomal targeting s 99.8 2.3E-18 7.9E-23 197.6 26.7 284 713-1007 37-356 (368)
24 4g1t_A Interferon-induced prot 99.8 2.9E-17 9.9E-22 195.6 35.0 380 594-1010 50-459 (472)
25 4g1t_A Interferon-induced prot 99.8 7.3E-17 2.5E-21 192.1 37.5 379 559-975 50-459 (472)
26 1fch_A Peroxisomal targeting s 99.8 5E-18 1.7E-22 194.8 26.0 304 639-970 34-354 (368)
27 4eqf_A PEX5-related protein; a 99.8 6.2E-18 2.1E-22 193.7 25.1 260 736-1006 65-352 (365)
28 4eqf_A PEX5-related protein; a 99.8 2.7E-17 9.3E-22 188.4 24.9 258 704-970 68-351 (365)
29 1b89_A Protein (clathrin heavy 99.8 8.6E-18 3E-22 186.3 17.9 183 607-826 15-197 (449)
30 3cv0_A Peroxisome targeting si 99.8 1.7E-16 5.9E-21 178.4 28.9 261 737-1007 22-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.6E-16 5.4E-21 174.1 26.2 251 713-982 11-269 (291)
32 3cv0_A Peroxisome targeting si 99.7 2.5E-16 8.5E-21 177.1 26.6 253 709-970 29-310 (327)
33 1b89_A Protein (clathrin heavy 99.7 2.2E-17 7.6E-22 183.1 15.9 253 571-866 14-268 (449)
34 3mkr_A Coatomer subunit epsilo 99.7 8.6E-16 3E-20 168.2 27.5 270 675-967 8-286 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.5E-22 196.0 12.8 154 171-329 123-286 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 197.9 10.6 119 210-360 127-246 (1134)
37 2h6f_A Protein farnesyltransfe 99.7 1.7E-15 6E-20 171.3 26.4 245 772-1027 98-364 (382)
38 2h6f_A Protein farnesyltransfe 99.7 2.6E-15 8.8E-20 169.9 27.0 250 732-992 92-364 (382)
39 3uq3_A Heat shock protein STI1 99.7 2.9E-15 9.9E-20 161.8 26.4 225 736-975 5-236 (258)
40 2pl2_A Hypothetical conserved 99.7 1.4E-15 4.7E-20 159.0 21.8 192 773-971 7-210 (217)
41 2pl2_A Hypothetical conserved 99.7 1.2E-15 4.1E-20 159.4 20.9 197 803-1007 2-211 (217)
42 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.5E-20 177.7 23.4 188 808-1011 178-388 (452)
43 3uq3_A Heat shock protein STI1 99.7 5.6E-15 1.9E-19 159.5 24.7 224 771-1009 5-235 (258)
44 3u4t_A TPR repeat-containing p 99.6 8.6E-15 2.9E-19 159.6 23.0 60 809-869 77-136 (272)
45 3e4b_A ALGK; tetratricopeptide 99.6 1E-14 3.4E-19 170.9 23.9 187 773-975 178-387 (452)
46 1ouv_A Conserved hypothetical 99.6 1.8E-13 6.3E-18 149.0 32.4 222 735-974 5-250 (273)
47 3u4t_A TPR repeat-containing p 99.6 2.3E-14 7.8E-19 156.2 24.3 243 773-1022 5-261 (272)
48 1ouv_A Conserved hypothetical 99.6 2.9E-13 1E-17 147.4 31.9 224 770-1011 5-252 (273)
49 3sf4_A G-protein-signaling mod 99.6 2.7E-14 9.3E-19 166.0 21.6 296 736-1033 9-364 (406)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.1E-14 1.7E-18 153.6 21.5 246 749-1004 18-269 (275)
51 3sf4_A G-protein-signaling mod 99.6 4.6E-14 1.6E-18 164.0 21.7 294 704-999 12-365 (406)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.1E-14 1.7E-18 153.6 20.5 246 713-969 17-269 (275)
53 4a1s_A PINS, partner of inscut 99.6 4.4E-14 1.5E-18 164.6 20.8 269 739-1009 51-371 (411)
54 2ho1_A Type 4 fimbrial biogene 99.6 4.6E-13 1.6E-17 143.9 26.8 198 774-975 40-238 (252)
55 2q7f_A YRRB protein; TPR, prot 99.6 7.4E-14 2.5E-18 149.1 19.5 162 808-974 59-221 (243)
56 2q7f_A YRRB protein; TPR, prot 99.6 8.8E-14 3E-18 148.5 20.0 216 735-958 22-239 (243)
57 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 3E-17 138.7 26.6 195 776-973 13-209 (225)
58 2ho1_A Type 4 fimbrial biogene 99.5 9.6E-13 3.3E-17 141.4 25.9 207 736-949 37-246 (252)
59 3ro2_A PINS homolog, G-protein 99.5 1.5E-13 5.1E-18 154.8 20.4 267 741-1009 10-331 (338)
60 3vtx_A MAMA; tetratricopeptide 99.5 4E-13 1.4E-17 136.3 21.3 164 806-974 5-169 (184)
61 4a1s_A PINS, partner of inscut 99.5 1.8E-13 6E-18 159.5 20.3 262 710-975 57-372 (411)
62 2vq2_A PILW, putative fimbrial 99.5 1.9E-12 6.3E-17 136.1 26.3 209 735-950 7-220 (225)
63 4abn_A Tetratricopeptide repea 99.5 1.3E-13 4.3E-18 162.7 18.4 213 787-1007 84-318 (474)
64 3ulq_A Response regulator aspa 99.5 1.1E-12 3.7E-17 151.0 25.6 230 777-1009 109-367 (383)
65 3vtx_A MAMA; tetratricopeptide 99.5 7.9E-13 2.7E-17 134.1 21.1 165 839-1009 3-169 (184)
66 3ro2_A PINS homolog, G-protein 99.5 4.3E-13 1.5E-17 151.0 20.4 266 708-975 12-332 (338)
67 4abn_A Tetratricopeptide repea 99.5 7.3E-13 2.5E-17 156.1 21.9 210 752-970 84-316 (474)
68 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.6E-16 136.7 29.8 219 753-980 33-273 (308)
69 4e6h_A MRNA 3'-END-processing 99.5 6E-10 2.1E-14 134.3 45.9 454 506-991 48-584 (679)
70 4gyw_A UDP-N-acetylglucosamine 99.5 9.9E-13 3.4E-17 160.6 20.5 162 841-1008 9-172 (723)
71 3ulq_A Response regulator aspa 99.5 2.1E-12 7.4E-17 148.4 21.9 230 742-974 109-367 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 6.2E-13 2.1E-17 147.9 15.3 236 736-972 27-304 (311)
73 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.5E-14 130.5 45.5 220 788-1010 326-570 (679)
74 2ond_A Cleavage stimulation fa 99.4 3.9E-11 1.3E-15 132.9 27.4 217 788-1009 33-269 (308)
75 4gyw_A UDP-N-acetylglucosamine 99.4 2.7E-12 9.3E-17 156.8 19.6 165 806-975 9-174 (723)
76 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-12 5.6E-17 144.5 16.2 237 771-1009 27-306 (311)
77 3q15_A PSP28, response regulat 99.4 3.5E-11 1.2E-15 137.9 26.6 231 776-1009 106-364 (378)
78 3q15_A PSP28, response regulat 99.4 7.4E-11 2.5E-15 135.1 26.5 233 739-974 104-364 (378)
79 4i17_A Hypothetical protein; T 99.4 4.3E-11 1.5E-15 126.1 22.2 151 807-960 8-167 (228)
80 4i17_A Hypothetical protein; T 99.4 3.3E-11 1.1E-15 127.0 21.0 205 735-953 6-221 (228)
81 1hz4_A MALT regulatory protein 99.3 2E-10 6.9E-15 131.4 27.3 268 742-1009 20-321 (373)
82 1qqe_A Vesicular transport pro 99.3 3.5E-11 1.2E-15 132.0 17.9 188 816-1007 47-266 (292)
83 1qqe_A Vesicular transport pro 99.3 4.9E-11 1.7E-15 130.8 17.6 198 780-981 46-273 (292)
84 3as5_A MAMA; tetratricopeptide 99.3 7.4E-11 2.5E-15 119.3 17.8 155 811-970 13-168 (186)
85 1hz4_A MALT regulatory protein 99.3 6.2E-10 2.1E-14 127.3 27.5 236 739-974 56-321 (373)
86 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.1E-15 117.1 18.8 163 841-1009 8-172 (186)
87 3urz_A Uncharacterized protein 99.2 1.2E-10 4.1E-15 120.3 17.0 132 882-1019 60-193 (208)
88 3edt_B KLC 2, kinesin light ch 99.2 9.7E-11 3.3E-15 127.8 16.7 228 782-1009 12-280 (283)
89 4ga2_A E3 SUMO-protein ligase 99.2 4.8E-11 1.6E-15 115.8 12.0 144 847-996 3-149 (150)
90 3edt_B KLC 2, kinesin light ch 99.2 2.5E-10 8.7E-15 124.5 17.4 227 747-974 12-280 (283)
91 4ga2_A E3 SUMO-protein ligase 99.2 4.8E-11 1.6E-15 115.8 9.6 145 812-961 3-149 (150)
92 3qky_A Outer membrane assembly 99.2 4.3E-10 1.5E-14 121.2 18.0 189 770-981 14-228 (261)
93 3qky_A Outer membrane assembly 99.2 8E-10 2.7E-14 119.0 19.9 211 735-967 14-253 (261)
94 3dra_A Protein farnesyltransfe 99.2 6E-09 2.1E-13 112.5 26.3 229 787-1023 49-300 (306)
95 3urz_A Uncharacterized protein 99.2 6E-10 2.1E-14 115.0 17.0 137 846-989 59-198 (208)
96 2pzi_A Probable serine/threoni 99.2 2.4E-10 8.3E-15 140.9 16.5 172 782-960 402-582 (681)
97 2pzi_A Probable serine/threoni 99.1 6.5E-10 2.2E-14 137.1 19.7 172 747-926 402-583 (681)
98 3dra_A Protein farnesyltransfe 99.1 1.7E-08 5.8E-13 109.0 26.4 223 751-982 48-293 (306)
99 2yhc_A BAMD, UPF0169 lipoprote 99.1 3E-09 1E-13 111.4 19.3 83 771-853 4-90 (225)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.6E-09 1.2E-13 110.8 19.6 183 806-1010 4-213 (225)
101 3rjv_A Putative SEL1 repeat pr 99.1 1.2E-08 4E-13 105.6 21.9 160 771-941 18-198 (212)
102 3mv2_B Coatomer subunit epsilo 99.0 4.4E-08 1.5E-12 104.3 25.5 79 755-834 85-164 (310)
103 3qou_A Protein YBBN; thioredox 99.0 1.9E-09 6.4E-14 117.6 15.5 163 839-1008 115-282 (287)
104 2ifu_A Gamma-SNAP; membrane fu 99.0 2.1E-09 7.3E-14 118.7 16.1 129 844-973 79-222 (307)
105 2ifu_A Gamma-SNAP; membrane fu 99.0 2.5E-09 8.4E-14 118.2 16.6 93 808-903 78-182 (307)
106 2r5s_A Uncharacterized protein 99.0 1E-09 3.5E-14 109.9 12.3 159 843-1008 8-171 (176)
107 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-08 3.6E-13 105.9 20.3 176 824-1011 4-198 (212)
108 4gco_A Protein STI-1; structur 99.0 2.9E-09 1E-13 99.3 13.5 113 872-988 8-122 (126)
109 2fo7_A Synthetic consensus TPR 99.0 7E-09 2.4E-13 98.0 16.5 126 844-973 4-130 (136)
110 4gco_A Protein STI-1; structur 99.0 3E-09 1E-13 99.3 13.2 115 838-956 9-125 (126)
111 3mv2_B Coatomer subunit epsilo 99.0 1.8E-08 6.2E-13 107.2 20.6 178 825-1009 85-281 (310)
112 3qou_A Protein YBBN; thioredox 99.0 5.6E-09 1.9E-13 113.8 17.1 162 806-971 117-280 (287)
113 2r5s_A Uncharacterized protein 99.0 2.2E-09 7.4E-14 107.5 12.7 160 809-972 9-170 (176)
114 3gyz_A Chaperone protein IPGC; 99.0 1.4E-09 4.7E-14 104.7 9.1 106 872-981 31-137 (151)
115 3gyz_A Chaperone protein IPGC; 99.0 5.6E-09 1.9E-13 100.4 13.4 125 879-1016 12-137 (151)
116 2vsy_A XCC0866; transferase, g 98.9 6.4E-09 2.2E-13 126.1 17.0 152 785-941 3-158 (568)
117 3dss_A Geranylgeranyl transfer 98.9 2.3E-07 7.8E-12 100.6 27.0 194 822-1024 90-317 (331)
118 2fo7_A Synthetic consensus TPR 98.9 3E-08 1E-12 93.6 17.0 128 878-1009 3-131 (136)
119 2vsy_A XCC0866; transferase, g 98.9 1E-08 3.5E-13 124.3 16.9 163 819-988 2-169 (568)
120 4f3v_A ESX-1 secretion system 98.9 2.8E-08 9.5E-13 104.4 15.9 189 783-980 18-240 (282)
121 3q7a_A Farnesyltransferase alp 98.9 4.5E-07 1.6E-11 98.6 25.4 231 784-1022 67-343 (349)
122 4f3v_A ESX-1 secretion system 98.8 2.7E-08 9.1E-13 104.5 13.2 198 748-954 18-249 (282)
123 1p5q_A FKBP52, FK506-binding p 98.8 7.5E-09 2.6E-13 115.5 9.1 150 854-1009 126-293 (336)
124 2vgx_A Chaperone SYCD; alterna 98.8 1.6E-08 5.6E-13 97.4 10.3 108 864-975 10-118 (148)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.3E-07 8E-12 95.9 19.1 125 845-974 10-149 (213)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5E-12 97.5 17.5 128 809-943 9-153 (213)
127 3u3w_A Transcriptional activat 98.8 3.9E-07 1.3E-11 99.6 21.7 162 778-939 82-265 (293)
128 3q7a_A Farnesyltransferase alp 98.8 1.9E-06 6.6E-11 93.7 26.4 225 748-980 66-335 (349)
129 3u3w_A Transcriptional activat 98.8 6E-07 2E-11 98.2 22.6 91 813-903 82-182 (293)
130 2qfc_A PLCR protein; TPR, HTH, 98.7 7.3E-07 2.5E-11 97.5 23.2 93 776-868 80-182 (293)
131 2uy1_A Cleavage stimulation fa 98.7 4.8E-06 1.6E-10 97.5 31.3 218 436-695 11-242 (493)
132 2vgx_A Chaperone SYCD; alterna 98.7 3.6E-08 1.2E-12 95.0 10.6 108 898-1009 9-117 (148)
133 2uy1_A Cleavage stimulation fa 98.7 7E-06 2.4E-10 96.1 32.2 385 538-1009 7-412 (493)
134 1a17_A Serine/threonine protei 98.7 1.7E-07 5.7E-12 92.4 15.4 123 844-970 16-141 (166)
135 2qfc_A PLCR protein; TPR, HTH, 98.7 5E-07 1.7E-11 98.8 20.7 131 879-1009 118-265 (293)
136 3dss_A Geranylgeranyl transfer 98.7 2.9E-06 9.9E-11 91.9 26.1 195 787-989 90-317 (331)
137 2c2l_A CHIP, carboxy terminus 98.7 3.5E-08 1.2E-12 107.1 10.9 92 809-903 7-99 (281)
138 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 106.3 11.5 192 840-1043 3-196 (281)
139 2lni_A Stress-induced-phosphop 98.7 1.5E-07 5.2E-12 88.5 14.0 116 841-960 16-132 (133)
140 2xcb_A PCRH, regulatory protei 98.7 5.7E-08 1.9E-12 92.9 10.6 102 872-975 13-115 (142)
141 1p5q_A FKBP52, FK506-binding p 98.7 1.5E-07 5.1E-12 105.0 15.5 129 841-973 147-292 (336)
142 2e2e_A Formate-dependent nitri 98.7 8.5E-08 2.9E-12 95.9 12.2 119 853-975 22-144 (177)
143 2e2e_A Formate-dependent nitri 98.7 9.3E-08 3.2E-12 95.6 11.9 125 886-1016 20-148 (177)
144 2vyi_A SGTA protein; chaperone 98.7 2.3E-07 8E-12 86.8 13.7 115 843-961 14-129 (131)
145 1a17_A Serine/threonine protei 98.7 3.2E-07 1.1E-11 90.2 15.4 129 877-1009 14-145 (166)
146 4gcn_A Protein STI-1; structur 98.6 2.3E-07 7.9E-12 86.5 12.9 93 914-1009 11-111 (127)
147 4gcn_A Protein STI-1; structur 98.6 3.8E-07 1.3E-11 85.0 13.6 93 879-972 11-109 (127)
148 3upv_A Heat shock protein STI1 98.6 5.2E-07 1.8E-11 84.1 14.5 96 878-975 6-101 (126)
149 1na0_A Designed protein CTPR3; 98.6 5.4E-07 1.9E-11 83.4 14.6 111 843-957 11-122 (125)
150 2lni_A Stress-induced-phosphop 98.6 5.3E-07 1.8E-11 84.7 14.7 115 877-995 17-132 (133)
151 3upv_A Heat shock protein STI1 98.6 2.7E-07 9.3E-12 86.0 12.4 112 841-955 4-121 (126)
152 2vyi_A SGTA protein; chaperone 98.6 5.8E-07 2E-11 84.0 14.8 118 876-997 12-130 (131)
153 2fbn_A 70 kDa peptidylprolyl i 98.6 4.3E-08 1.5E-12 100.1 7.2 147 815-966 13-176 (198)
154 2xcb_A PCRH, regulatory protei 98.6 3.5E-07 1.2E-11 87.4 12.9 98 909-1009 16-114 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.6 6.1E-08 2.1E-12 99.0 8.0 155 848-1008 11-184 (198)
156 3gw4_A Uncharacterized protein 98.6 3.5E-07 1.2E-11 93.7 13.5 26 878-903 68-93 (203)
157 3gw4_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 92.5 14.4 154 853-1009 4-175 (203)
158 1na0_A Designed protein CTPR3; 98.6 8.8E-07 3E-11 81.9 14.8 115 876-994 9-124 (125)
159 1elw_A TPR1-domain of HOP; HOP 98.5 1.3E-06 4.5E-11 79.8 14.3 107 843-953 6-113 (118)
160 1hxi_A PEX5, peroxisome target 98.5 5.3E-07 1.8E-11 83.2 11.3 99 878-980 19-117 (121)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 5.2E-07 1.8E-11 88.7 12.0 96 843-941 13-109 (164)
162 1dce_A Protein (RAB geranylger 98.5 2.4E-06 8.2E-11 101.7 19.5 171 822-999 45-244 (567)
163 3sz7_A HSC70 cochaperone (SGT) 98.5 1.2E-06 4.2E-11 86.0 14.1 102 877-982 12-113 (164)
164 2dba_A Smooth muscle cell asso 98.5 1.9E-06 6.6E-11 82.6 15.0 108 842-953 29-140 (148)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.4E-07 4.8E-12 110.1 8.0 147 855-1007 248-412 (457)
166 2hr2_A Hypothetical protein; a 98.5 3E-07 1E-11 86.8 8.6 94 844-940 14-131 (159)
167 1elw_A TPR1-domain of HOP; HOP 98.5 2.5E-06 8.5E-11 77.9 14.5 109 877-989 5-114 (118)
168 2hr2_A Hypothetical protein; a 98.4 8.4E-07 2.9E-11 83.8 10.6 97 878-975 13-131 (159)
169 1dce_A Protein (RAB geranylger 98.4 2.7E-06 9.2E-11 101.3 17.5 170 856-1033 44-243 (567)
170 3q49_B STIP1 homology and U bo 98.4 2E-06 7E-11 81.3 13.1 96 877-974 10-105 (137)
171 3rkv_A Putative peptidylprolyl 98.4 1.4E-06 4.6E-11 85.5 11.8 66 877-943 64-129 (162)
172 3q49_B STIP1 homology and U bo 98.4 2E-06 6.9E-11 81.3 12.6 102 839-943 7-109 (137)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.3E-06 4.3E-11 102.0 13.1 126 843-972 270-412 (457)
174 1elr_A TPR2A-domain of HOP; HO 98.4 2E-06 6.8E-11 80.3 12.0 94 879-974 7-107 (131)
175 1hxi_A PEX5, peroxisome target 98.4 1.3E-06 4.3E-11 80.5 10.3 99 842-943 18-117 (121)
176 2xev_A YBGF; tetratricopeptide 98.4 4.4E-06 1.5E-10 77.9 14.0 92 847-941 8-106 (129)
177 1wao_1 Serine/threonine protei 98.3 2.9E-07 1E-11 107.8 6.0 123 844-970 9-134 (477)
178 2kck_A TPR repeat; tetratricop 98.3 2.7E-06 9.1E-11 76.8 11.0 97 877-974 7-105 (112)
179 2dba_A Smooth muscle cell asso 98.3 8.3E-06 2.8E-10 78.1 15.1 110 876-990 28-142 (148)
180 2if4_A ATFKBP42; FKBP-like, al 98.3 9.3E-07 3.2E-11 98.5 9.2 144 844-1009 182-327 (338)
181 1elr_A TPR2A-domain of HOP; HO 98.3 4.2E-06 1.4E-10 78.1 12.5 110 911-1025 4-121 (131)
182 2kck_A TPR repeat; tetratricop 98.3 3.3E-06 1.1E-10 76.2 11.4 100 908-1010 3-106 (112)
183 3k9i_A BH0479 protein; putativ 98.3 1.1E-06 3.8E-11 80.5 8.2 85 889-974 3-89 (117)
184 3rkv_A Putative peptidylprolyl 98.3 4.5E-06 1.5E-10 81.7 13.0 101 879-982 14-131 (162)
185 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4E-10 93.6 18.4 166 774-939 58-244 (434)
186 4b4t_Q 26S proteasome regulato 98.3 1.9E-05 6.6E-10 91.7 20.2 165 808-972 57-242 (434)
187 2xev_A YBGF; tetratricopeptide 98.3 1.1E-05 3.9E-10 75.1 14.6 100 879-982 5-110 (129)
188 1wao_1 Serine/threonine protei 98.3 6.4E-07 2.2E-11 104.9 6.8 124 878-1005 8-134 (477)
189 3k9i_A BH0479 protein; putativ 98.3 1.7E-06 5.7E-11 79.3 8.1 92 854-947 3-96 (117)
190 1ihg_A Cyclophilin 40; ppiase 98.2 4.7E-06 1.6E-10 93.8 12.5 88 911-1001 273-361 (370)
191 1ihg_A Cyclophilin 40; ppiase 98.2 5.7E-06 1.9E-10 93.1 12.8 91 876-968 273-363 (370)
192 3ro3_A PINS homolog, G-protein 98.2 6.6E-06 2.3E-10 80.1 11.9 94 878-971 51-154 (164)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 3.2E-06 1.1E-10 94.2 9.7 145 877-1044 180-326 (338)
194 3ro3_A PINS homolog, G-protein 98.2 8E-06 2.7E-10 79.5 11.6 133 877-1009 10-157 (164)
195 1zu2_A Mitochondrial import re 98.2 4E-06 1.4E-10 79.0 8.0 105 852-986 13-129 (158)
196 3n71_A Histone lysine methyltr 98.0 2.4E-05 8.1E-10 90.6 13.2 53 851-903 319-378 (490)
197 1zu2_A Mitochondrial import re 98.0 1E-05 3.5E-10 76.2 8.0 101 816-943 12-123 (158)
198 2l6j_A TPR repeat-containing p 97.9 3E-05 1E-09 69.7 9.4 89 877-967 5-99 (111)
199 3n71_A Histone lysine methyltr 97.9 4.7E-05 1.6E-09 88.2 13.0 87 817-903 320-420 (490)
200 1klx_A Cysteine rich protein B 97.9 0.00015 5.3E-09 68.1 14.3 109 856-975 10-126 (138)
201 2kat_A Uncharacterized protein 97.9 4E-05 1.4E-09 69.6 9.7 80 859-941 3-83 (115)
202 2l6j_A TPR repeat-containing p 97.9 3.2E-05 1.1E-09 69.5 9.0 93 910-1005 3-102 (111)
203 1na3_A Designed protein CTPR2; 97.8 0.00012 4.1E-09 62.8 11.3 81 877-959 10-90 (91)
204 2kat_A Uncharacterized protein 97.8 6.2E-05 2.1E-09 68.3 9.7 81 893-975 2-82 (115)
205 1klx_A Cysteine rich protein B 97.8 0.00022 7.6E-09 67.0 13.2 113 889-1012 8-128 (138)
206 1na3_A Designed protein CTPR2; 97.8 0.0001 3.5E-09 63.3 9.7 83 910-995 8-91 (91)
207 3ma5_A Tetratricopeptide repea 97.6 0.00017 5.9E-09 63.3 8.6 63 877-940 8-70 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00023 7.9E-09 62.5 8.9 67 908-975 4-70 (100)
209 2kc7_A BFR218_protein; tetratr 97.3 0.00032 1.1E-08 61.4 6.4 60 882-942 6-66 (99)
210 3qwp_A SET and MYND domain-con 97.2 0.002 6.8E-08 73.4 13.4 91 919-1009 295-399 (429)
211 3ly7_A Transcriptional activat 97.2 0.0055 1.9E-07 66.3 15.9 74 908-985 274-347 (372)
212 3qww_A SET and MYND domain-con 97.1 0.001 3.5E-08 75.6 9.9 86 854-939 311-410 (433)
213 3u64_A Protein TP_0956; tetrat 97.1 0.041 1.4E-06 56.9 20.3 93 856-950 178-281 (301)
214 3u64_A Protein TP_0956; tetrat 97.1 0.056 1.9E-06 55.9 20.9 85 927-1013 179-272 (301)
215 3ly7_A Transcriptional activat 97.1 0.0052 1.8E-07 66.5 13.7 67 875-943 276-342 (372)
216 3qwp_A SET and MYND domain-con 97.0 0.0039 1.3E-07 70.9 13.5 89 851-939 297-399 (429)
217 3bee_A Putative YFRE protein; 97.0 0.0035 1.2E-07 53.6 9.5 70 908-980 3-75 (93)
218 3qww_A SET and MYND domain-con 97.0 0.0023 7.9E-08 72.6 10.7 85 820-904 312-410 (433)
219 2kc7_A BFR218_protein; tetratr 96.8 0.0042 1.4E-07 54.0 9.2 64 916-982 5-69 (99)
220 1pc2_A Mitochondria fission pr 96.6 0.0095 3.2E-07 55.3 10.0 83 859-943 16-103 (152)
221 1pc2_A Mitochondria fission pr 96.5 0.01 3.5E-07 55.1 9.2 86 927-1016 14-104 (152)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.099 3.4E-06 65.8 20.7 45 782-832 663-707 (814)
223 2v5f_A Prolyl 4-hydroxylase su 96.3 0.026 9E-07 49.4 10.8 62 880-941 9-76 (104)
224 3mkq_A Coatomer beta'-subunit; 96.2 0.071 2.4E-06 67.2 18.4 129 670-831 633-761 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.2 0.03 1E-06 49.0 10.2 72 909-982 3-80 (104)
226 3bee_A Putative YFRE protein; 95.9 0.04 1.4E-06 46.9 9.5 49 892-941 25-73 (93)
227 3mkq_B Coatomer subunit alpha; 95.4 0.44 1.5E-05 45.4 15.1 101 711-832 15-115 (177)
228 1nzn_A CGI-135 protein, fissio 95.3 0.13 4.3E-06 45.9 10.5 85 858-943 18-106 (126)
229 4h7y_A Dual specificity protei 94.8 0.45 1.5E-05 43.4 12.5 57 888-945 72-128 (161)
230 1nzn_A CGI-135 protein, fissio 94.1 0.4 1.4E-05 42.7 10.5 67 909-975 33-103 (126)
231 4ady_A RPN2, 26S proteasome re 94.0 15 0.00052 45.0 50.0 257 569-833 383-656 (963)
232 4h7y_A Dual specificity protei 94.0 0.62 2.1E-05 42.4 11.7 103 735-839 12-127 (161)
233 3mkq_B Coatomer subunit alpha; 93.8 0.77 2.6E-05 43.7 12.5 46 817-868 16-61 (177)
234 3ffl_A Anaphase-promoting comp 93.3 0.4 1.4E-05 44.7 9.6 56 848-903 27-90 (167)
235 3lpz_A GET4 (YOR164C homolog); 92.5 13 0.00043 39.6 22.4 81 839-938 134-214 (336)
236 4ady_A RPN2, 26S proteasome re 91.6 31 0.0011 42.3 48.5 26 353-378 233-258 (963)
237 3lvg_A Clathrin heavy chain 1; 91.6 0.00041 1.4E-08 75.8 -14.6 203 736-959 54-276 (624)
238 3ffl_A Anaphase-promoting comp 91.4 1.1 3.8E-05 41.8 9.9 134 808-956 22-165 (167)
239 4b4t_P 26S proteasome regulato 91.4 13 0.00046 41.9 21.4 50 644-693 30-83 (445)
240 4b4t_P 26S proteasome regulato 91.4 12 0.00041 42.3 20.9 94 810-903 141-245 (445)
241 3o48_A Mitochondria fission 1 90.8 1.8 6.1E-05 38.7 10.1 22 948-969 80-101 (134)
242 3lvg_A Clathrin heavy chain 1; 90.3 0.00029 1E-08 76.9 -17.2 264 666-973 54-318 (624)
243 1y8m_A FIS1; mitochondria, unk 90.1 4.9 0.00017 36.4 12.5 70 874-943 37-109 (144)
244 1y8m_A FIS1; mitochondria, unk 90.0 3.4 0.00011 37.5 11.4 69 944-1016 37-110 (144)
245 3o48_A Mitochondria fission 1 89.5 2.9 9.8E-05 37.4 10.4 72 872-943 36-110 (134)
246 1wy6_A Hypothetical protein ST 89.3 11 0.00039 33.5 14.9 59 391-450 97-155 (172)
247 2wpv_A GET4, UPF0363 protein Y 88.2 28 0.00097 36.6 20.3 107 498-619 41-158 (312)
248 3txn_A 26S proteasome regulato 87.7 36 0.0012 37.3 22.1 26 737-762 20-45 (394)
249 4gns_B Protein CSD3, chitin bi 87.3 3 0.0001 50.1 12.2 54 918-972 344-397 (754)
250 1wy6_A Hypothetical protein ST 86.3 18 0.00061 32.3 15.9 64 704-768 94-157 (172)
251 4gns_B Protein CSD3, chitin bi 85.8 2 6.7E-05 51.7 9.5 52 815-867 346-397 (754)
252 3lpz_A GET4 (YOR164C homolog); 85.7 40 0.0014 35.8 24.0 80 735-833 135-214 (336)
253 2ff4_A Probable regulatory pro 84.2 3.9 0.00013 45.4 10.7 65 917-982 177-246 (388)
254 3txn_A 26S proteasome regulato 82.8 60 0.0021 35.5 24.0 62 597-658 141-209 (394)
255 2wpv_A GET4, UPF0363 protein Y 82.4 53 0.0018 34.6 24.0 80 735-833 133-215 (312)
256 4fhn_B Nucleoporin NUP120; pro 82.3 27 0.00092 45.1 18.8 56 808-868 814-869 (1139)
257 4fhn_B Nucleoporin NUP120; pro 80.4 17 0.00057 47.0 15.9 165 776-962 817-987 (1139)
258 1zbp_A Hypothetical protein VP 80.1 27 0.00092 35.6 13.6 57 886-943 7-63 (273)
259 2ff4_A Probable regulatory pro 78.6 13 0.00045 41.1 12.3 65 846-912 176-246 (388)
260 1zbp_A Hypothetical protein VP 76.9 66 0.0023 32.8 15.4 114 920-1043 6-126 (273)
261 4b4t_R RPN7, 26S proteasome re 72.6 20 0.00068 40.3 11.9 61 843-903 133-195 (429)
262 4b4t_R RPN7, 26S proteasome re 70.4 19 0.00065 40.4 11.0 96 808-903 133-235 (429)
263 2p58_C Putative type III secre 69.0 29 0.001 28.9 8.4 50 255-310 50-99 (116)
264 2p58_C Putative type III secre 66.8 43 0.0015 27.9 9.0 84 261-353 23-106 (116)
265 1qsa_A Protein (soluble lytic 66.7 2E+02 0.0069 33.7 39.1 462 527-1051 9-484 (618)
266 2uwj_G Type III export protein 66.4 29 0.00098 28.9 7.9 85 365-458 21-105 (115)
267 1qsa_A Protein (soluble lytic 65.4 2.1E+02 0.0072 33.5 37.8 18 711-728 329-346 (618)
268 2uwj_G Type III export protein 63.9 41 0.0014 28.0 8.4 50 290-345 49-98 (115)
269 1v54_E Cytochrome C oxidase po 58.2 58 0.002 27.4 8.4 49 540-588 25-73 (109)
270 1v54_E Cytochrome C oxidase po 56.3 40 0.0014 28.3 7.2 61 122-183 27-87 (109)
271 1k1a_A B-cell lymphoma 3-encod 53.5 33 0.0011 34.4 8.4 22 186-207 17-38 (241)
272 3esl_A Checkpoint serine/threo 52.3 76 0.0026 30.7 9.7 53 717-769 95-148 (202)
273 1wdy_A 2-5A-dependent ribonucl 50.9 43 0.0015 34.5 9.1 21 328-348 192-212 (285)
274 3esl_A Checkpoint serine/threo 50.2 60 0.0021 31.4 8.6 54 821-874 94-148 (202)
275 2r9g_A AAA ATPase, central reg 49.0 1.2E+02 0.0041 29.1 10.3 68 844-912 14-89 (204)
276 4b4t_S RPN3, 26S proteasome re 46.5 1.7E+02 0.0057 33.1 12.9 188 841-1051 231-434 (523)
277 2y69_E Cytochrome C oxidase su 42.1 1.2E+02 0.0043 27.0 8.4 49 540-588 68-116 (152)
278 2wvi_A Mitotic checkpoint seri 40.6 87 0.003 29.2 7.9 64 947-1016 67-131 (164)
279 4a1g_A Mitotic checkpoint seri 39.3 1.5E+02 0.0053 27.1 9.2 50 720-769 84-134 (152)
280 3pvs_A Replication-associated 38.7 2.5E+02 0.0085 31.3 13.1 38 853-890 267-304 (447)
281 1k1a_A B-cell lymphoma 3-encod 37.2 96 0.0033 30.8 8.8 28 146-173 12-39 (241)
282 2wvi_A Mitotic checkpoint seri 36.5 1.9E+02 0.0063 27.0 9.4 50 720-769 79-129 (164)
283 2y69_E Cytochrome C oxidase su 36.2 2.4E+02 0.0081 25.2 9.5 62 610-673 68-129 (152)
284 4a1g_A Mitotic checkpoint seri 35.9 1.3E+02 0.0045 27.6 8.2 25 881-905 106-130 (152)
285 3ubw_A 14-3-3E, 14-3-3 protein 34.7 3.7E+02 0.013 27.1 13.0 19 921-939 209-227 (261)
286 3bge_A Predicted ATPase; struc 34.4 1.5E+02 0.0052 28.4 8.5 39 853-891 19-57 (201)
287 3ctd_A Putative ATPase, AAA fa 33.5 1.8E+02 0.0063 28.1 9.0 49 843-891 34-85 (213)
288 3kea_A K1L; tropism, ANK repea 33.5 73 0.0025 33.1 7.3 143 147-305 35-183 (285)
289 3eiq_C Programmed cell death p 32.4 4.7E+02 0.016 27.9 13.2 69 388-457 220-290 (358)
290 3eu9_A Huntingtin-interacting 31.7 54 0.0019 32.6 5.8 46 116-165 17-64 (240)
291 1ya0_A SMG-7 transcript varian 30.7 2.1E+02 0.0073 32.3 10.8 72 847-921 158-230 (497)
292 4b4t_S RPN3, 26S proteasome re 30.5 5.8E+02 0.02 28.8 13.9 123 877-1004 232-364 (523)
293 3mv2_A Coatomer subunit alpha; 30.5 4.9E+02 0.017 27.2 15.6 20 781-800 124-143 (325)
294 2khu_A Immunoglobulin G-bindin 30.3 39 0.0013 27.5 3.1 24 1082-1105 66-89 (108)
295 2d2s_A Exocyst complex compone 29.9 1.8E+02 0.0061 29.1 8.9 21 322-342 25-45 (235)
296 1wdy_A 2-5A-dependent ribonucl 28.3 1E+02 0.0035 31.5 7.4 12 182-193 9-20 (285)
297 2qx5_A Nucleoporin NIC96; mRNA 27.5 8.1E+02 0.028 28.8 19.7 20 531-550 300-319 (661)
298 1ya0_A SMG-7 transcript varian 27.3 2.2E+02 0.0074 32.3 10.1 80 877-958 153-232 (497)
299 3eiq_C Programmed cell death p 26.3 4.2E+02 0.014 28.3 11.5 24 284-307 58-81 (358)
300 3eu9_A Huntingtin-interacting 26.3 68 0.0023 31.8 5.4 7 291-297 117-123 (240)
301 4aez_C MAD3, mitotic spindle c 26.2 1.5E+02 0.005 29.2 7.2 52 858-909 131-183 (223)
302 4aez_C MAD3, mitotic spindle c 24.3 1.4E+02 0.0049 29.3 6.7 53 963-1015 131-184 (223)
303 3jxi_A Vanilloid receptor-rela 22.3 49 0.0017 33.7 3.3 17 152-168 14-30 (260)
304 3kea_A K1L; tropism, ANK repea 21.8 1.9E+02 0.0065 29.7 8.0 20 356-375 164-183 (285)
305 3mv2_A Coatomer subunit alpha; 21.6 7.1E+02 0.024 26.0 12.2 49 368-416 188-238 (325)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-37 Score=382.59 Aligned_cols=485 Identities=11% Similarity=-0.017 Sum_probs=357.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 000951 523 PNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTIL 602 (1211)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 602 (1211)
++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4555666666666666666666666666653 2355556666666666666666666666655432 23555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHH
Q 000951 603 AETCKSGNLWEAIVLLDEMVQF---------------NLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNV 667 (1211)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 667 (1211)
.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|+..|+++++.+ +.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 235 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE 235 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence 6666666666666666632211 223357788888888888888888888888888754 23345
Q ss_pred HHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000951 668 MFTCLVDGLFKAGQSKAAM--HI-SKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLH 744 (1211)
Q Consensus 668 ~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 744 (1211)
.+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|..+|+++.+. +++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 5555554443332222211 11 344444333344456666778888889999999999888753 468889999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHH
Q 000951 745 GYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGK 824 (1211)
Q Consensus 745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 824 (1211)
+|.+.|++++|+++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+. .+.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999887532 25667888888899999999999999998865 34467788888999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
|+++|+++.+.. +.+..+|+.++.+|.+.|++++|+.+|+++++ ..| +..++..++.+|.+.|++++|.++|+++.
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999887643 34577899999999999999999999999988 566 45788889999999999999999999998
Q ss_pred HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CcccC--HHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951 904 ALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM----RLVPT--IATFTTLIHKFCKEAKFVDALKLKGTMELSGV 977 (1211)
Q Consensus 904 ~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~p~--~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 977 (1211)
+.. +.+..+|..++.+|.+.|++++|+++|+++++. +..|+ ..+|..++.+|.+.|++++|+..|+.+...
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 763 567888899999999999999999999998886 44565 678999999999999999999998887766
Q ss_pred CC-chHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHH
Q 000951 978 KL-DVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDA 1025 (1211)
Q Consensus 978 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~ 1025 (1211)
.| +..+|..++.+|...|+|++|.+.++++.+ +.|+. ..+..+.+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRA 593 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 56 455888899999999999999999998876 46655 566555443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-37 Score=380.36 Aligned_cols=503 Identities=11% Similarity=-0.011 Sum_probs=271.0
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 000951 152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFK 231 (1211)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 231 (1211)
+.+.+..+...+..+. .+++..|+.++..+.+.|++++|..+|++|... .|+..++..++..|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 245556666666666666666666666666532 4555566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 000951 232 LIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNF 311 (1211)
Q Consensus 232 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 311 (1211)
+|+++... +++..+++.++.+|.+.|++++|..+|+++.... .. ..++.+.+ -...+.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-----~~~~~~~~-----------~~~~~~ 196 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR----KD-----EKNANKLL-----------MQDGGI 196 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------------------------------CCCSSC
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc----cc-----cccccccc-----------cccccc
Confidence 66655422 3455555555555555555555555554311100 00 00000000 001133
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHhcCChHH--HHHH-HHHHHHCCCCcCHHHH
Q 000951 312 SPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCKHAKFDL--ARSL-LERMRTNGISISCIAY 388 (1211)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~l-~~~~~~~~~~~~~~~~ 388 (1211)
+++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+. +..+ +..+...+..+...+|
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 4456777777777777777777777777777643 1223334444333322211111 1111 3444444444445566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 000951 389 TSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKM 468 (1211)
Q Consensus 389 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 468 (1211)
+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES 352 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh
Confidence 66777777777888888888777654 4677777778888888888888888887777654 34566677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 000951 469 GKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMF 548 (1211)
Q Consensus 469 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (1211)
|++++|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|
T Consensus 353 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777755433 66677777777777777777777777776543 235667777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 000951 549 DEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF---- 624 (1211)
Q Consensus 549 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 624 (1211)
+++.+.+ +.+..++..++.+|.+.|++++|.+.|+.+.+..+. +..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 7776643 234445555555555555555555555554443332 3444445555555555555555555544443
Q ss_pred CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000951 625 NLLPD--RYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIM 692 (1211)
Q Consensus 625 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 692 (1211)
+..|+ ..+|..++.+|.+.|++++|...|+++++.+ +.+..+|..++.+|.+.|++++|.+.++++
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22333 3344444444444444444444444444332 223333444444444444444444444443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.6e-27 Score=273.51 Aligned_cols=379 Identities=12% Similarity=0.014 Sum_probs=274.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 000951 601 ILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAG 680 (1211)
Q Consensus 601 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 680 (1211)
+...+.+.|++++|++.+.++.+.. +.+...+..+...+...|++++|..+++.+++.. +.+..+|..++..+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 3455667788888888888777653 2345556666667777888888888888877753 455677888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 000951 681 QSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLL 759 (1211)
Q Consensus 681 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (1211)
++++|+..|+++++.. +.+...+..++.++.+.|++++|...|+++.+. .| +...+..++..+...|++++|++.|
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888876642 334556777777788888888888888877753 45 4666777777777788888888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC
Q 000951 760 NTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV 838 (1211)
Q Consensus 760 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 838 (1211)
+++++. .| +..+|..++..+...|++++|+..|+++++.+ +.+...+..++.++...|++++|++.|+++.+.. +
T Consensus 159 ~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 159 LKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 887773 45 45667777777778888888888888877742 2235667777777888888888888887776643 2
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.+..+|..++.+|...|++++|+..|+++++ ..|+ ..++..++.++...|++++|.+.|+++++. .+.+..++..+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l 311 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNL 311 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHH
Confidence 2466777777778888888888888888777 6665 467777777777888888888888877766 35667777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG 995 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 995 (1211)
+.++...|++++|++.|+++++..|. +..++..++.+|.+.|++++|+..|+.+... .|+.. .|+.++.++...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 77777788888888888887776544 6777777888888888888888777766544 67543 6777777666554
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4e-27 Score=273.11 Aligned_cols=378 Identities=16% Similarity=0.075 Sum_probs=331.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 000951 636 LLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMG 715 (1211)
Q Consensus 636 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 715 (1211)
+...+.+.|++++|+..+.++.+.. +.+...+..+...+...|++++|...++.+++.. +.+...|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3456778999999999999999864 4456778888899999999999999999987753 567889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 000951 716 NMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDK-LTCHSLILGFCETGMLEVGFKF 793 (1211)
Q Consensus 716 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 793 (1211)
++++|...|+++.+. .| +..+|..++.++.+.|++++|++.|+++++ ..|+. ..+..+...+...|++++|++.
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999864 56 677899999999999999999999999998 45754 4566788899999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC
Q 000951 794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT 873 (1211)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~ 873 (1211)
|+++++.. +.+..++..++.+|...|++++|++.|+++++.+ +.+...|..++..+...|++++|+..|+++++ ..
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~ 233 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LS 233 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence 99999853 3357789999999999999999999999998854 33578899999999999999999999999998 77
Q ss_pred CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951 874 PK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTL 952 (1211)
Q Consensus 874 p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L 952 (1211)
|+ ..++..++.++...|++++|++.|+++++.+ +.+..++..++.++.+.|++++|++.|+++++..|. +..+|..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHH
Confidence 86 5889999999999999999999999999873 566788999999999999999999999999998765 89999999
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcc
Q 000951 953 IHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKE 1030 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~ 1030 (1211)
+.++...|++++|+..++.+... .|+. .++..++.+|...|++++|.+.++++.+ +.|+. ..|..++..+...|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999877654 7864 4889999999999999999999999976 57766 88888877655443
No 5
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=9.9e-22 Score=240.25 Aligned_cols=841 Identities=13% Similarity=0.104 Sum_probs=478.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 000951 106 SVFDLLIRVYLREGMVEYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVS 185 (1211)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 185 (1211)
..|..-...|...|++++|..+--..+ .|+-.+..|.+.+-.+=...|+..-....|.-+.+.| +.|..----+++..
T Consensus 362 ~l~~~~F~~l~~~g~y~~AA~~aa~sp-~giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~Ln~~eSlEl~r~v 439 (1630)
T 1xi4_A 362 ELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPV 439 (1630)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344445566777888888887776543 3555677777777776667777778888888888776 55655555566666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 000951 186 CVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGY 265 (1211)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 265 (1211)
..+|+.+ +++++... +..+++-=+.=+.+..+..-|+.+|-+.. ...-.+.++++.|+++++.
T Consensus 440 l~q~r~~----lle~Wl~e----~KL~~SEeLGDlv~~~d~~lAl~iY~~a~---------~~~Kvi~~l~~~gq~~ki~ 502 (1630)
T 1xi4_A 440 LQQGRKQ----LLEKWLKE----DKLECSEELGDLVKSVDPTLALSVYLRAN---------VPNKVIQCFAETGQVQKIV 502 (1630)
T ss_pred HHhchHH----HHHHHHHh----CCccccHHHHHHHHhcChHHHHHHHHhcC---------CcHHHHHHHHHhCCHHHHH
Confidence 6665543 44444443 22233222223334446777777776432 2246788889999999988
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 266 LLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 266 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (1211)
.+-+ +.|..|| |..|+..+.+. +.+.|.++-..+.+.. |.....+.+++.+...+.+.++..++-+..+.+
T Consensus 503 ~Y~~---~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n 573 (1630)
T 1xi4_A 503 LYAK---KVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNN 573 (1630)
T ss_pred HHHh---ccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Confidence 8754 3466776 44566665544 5788888777666552 345668889999999999999999998888776
Q ss_pred CCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CC-CCHhh
Q 000951 346 LRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDG--LN-PDLIT 422 (1211)
Q Consensus 346 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~~ 422 (1211)
-+-+...-+-++..-.. .|-++-+.+...++- +..-+..+...+-+.|-+++|++.|.++..-. +. .....
T Consensus 574 ~~e~~~LQTrlle~Nl~-----~~pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~ 647 (1630)
T 1xi4_A 574 RPSEGPLQTRLLEMNLM-----HAPQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLN 647 (1630)
T ss_pred ChhhhhHhHHHHHHhhc-----cchhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCC
Confidence 33333444555544222 244455555555543 55567888888999999999999998664310 00 00011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 000951 423 FSVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYS-------------TLIYYFCKMGKVTEAMKVYAVMNRNAQGSD 489 (1211)
Q Consensus 423 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 489 (1211)
-..|+ .|...=..+.+++.+++|+..++.-|..... .++..+-+.+.++.-.-.+..+.. ...|
T Consensus 648 ~~~l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d 724 (1630)
T 1xi4_A 648 PEWLV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQD 724 (1630)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCC
Confidence 11222 3334455688999999998765544433333 333444444444433333333332 3447
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHH------------HhcCC---CC------------CHHHH------HHHHHHHH
Q 000951 490 HFTCNMLVASLCKGGKVCEAEDYVGHM------------KRIGV---VP------------NSITF------DCMIDGYG 536 (1211)
Q Consensus 490 ~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~g~---~p------------~~~~~------~~li~~~~ 536 (1211)
..+....|.+.++.|++.+.+++.++- .+..+ .| +.+.| ...|..|.
T Consensus 725 ~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv 804 (1630)
T 1xi4_A 725 PDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYV 804 (1630)
T ss_pred hHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHH
Confidence 778888999999999988887765441 11111 01 11111 12234443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951 537 TLGDGLKAFSMFDEMVKLGHHPSIFTYGSL-------------LKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA 603 (1211)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 603 (1211)
+.-++..+-.+...+++.++. ......| +..+-+.+++.--...++.-...|.. ++.++|+|+.
T Consensus 805 ~~vnp~~~p~Vvg~lld~d~~--e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalak 881 (1630)
T 1xi4_A 805 QKVNPSRLPVVIGGLLDVDCS--EDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAK 881 (1630)
T ss_pred hccCCcccchhhhhhhcCCCC--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHH
Confidence 332222222222222211111 1111111 11112222222222223333333332 4555555555
Q ss_pred HHHHcCCHHHH----------------------------------------------------H--------HHHHHHH-
Q 000951 604 ETCKSGNLWEA----------------------------------------------------I--------VLLDEMV- 622 (1211)
Q Consensus 604 ~~~~~g~~~~A----------------------------------------------------~--------~~~~~m~- 622 (1211)
.|...++-.+. . +++...+
T Consensus 882 iyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~ 961 (1630)
T 1xi4_A 882 IYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLL 961 (1630)
T ss_pred HHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhc
Confidence 55433221111 0 0111100
Q ss_pred --------------h----CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCCHHHHHHH-----------
Q 000951 623 --------------Q----FNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRT-FSPNNVMFTCL----------- 672 (1211)
Q Consensus 623 --------------~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l----------- 672 (1211)
. ....|+.+ ...+.+|...|.+.+|++++++++-.+. +..+...-+.+
T Consensus 962 ~~n~~RR~Lidqv~a~aL~e~~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~R 1039 (1630)
T 1xi4_A 962 ESNPYRRPLIDQVVQTALSETQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTR 1039 (1630)
T ss_pred CCcHHHHHHHHHHHHhhcccccCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhh
Confidence 0 01112222 2344567788888888888888874331 11111222222
Q ss_pred ----------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 000951 673 ----------------VDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSL 736 (1211)
Q Consensus 673 ----------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 736 (1211)
...+...|.+++|..+|++.. -.....+.+ +-..|++++|.++.+++. ++
T Consensus 1040 v~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p 1105 (1630)
T 1xi4_A 1040 VMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EP 1105 (1630)
T ss_pred HHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CH
Confidence 334455566666666665541 011111112 224566666666665442 46
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC 816 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 816 (1211)
.+|..++.++...|++++|++.|.++ .|...|..++.++.+.|++++|++++..+.+.. +++.+...++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 67777777777777777777777553 255566667777777777777777777766642 3333444577777
Q ss_pred HhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHH
Q 000951 817 CEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAF 896 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 896 (1211)
++.+++++ ++-| ++ .++...|..++..|...|++++|..+|..+- .|..++.++.+.|++++|.
T Consensus 1178 AKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHH
Confidence 77777664 3323 21 3455566667777777777777777777753 3777777777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC
Q 000951 897 KLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG 976 (1211)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 976 (1211)
+.++++ .+..+|..+..++...|++..|......+. .++..+..++..|.+.|.+++|+.+++. .++
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~--aL~ 1308 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA--ALG 1308 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHH--Hhc
Confidence 777766 234667777777777777777776644321 2455666778888888888888888754 345
Q ss_pred CCCchH-HHHHHHHHHHhC--CChhHHHHHHHHHHHcCCcc------ChhhHHHHHHHHHhcccchHHHHHHHH
Q 000951 977 VKLDVV-SYNVLISGLCAN--GDVMPAFELYEEMKHKGLCP------NSTTYSVLIDAISKKENNLVKGEILLK 1041 (1211)
Q Consensus 977 ~~p~~~-~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~~~~~~~a~~~~~ 1041 (1211)
++|.+. .|.-++.+|++. ++..++.+.|.... .+.| +...|.++.-.+.+.|.++.++..+.+
T Consensus 1309 LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1309 LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 566544 444555555543 45556666665442 2333 336788888888888888887754443
No 6
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=2.4e-21 Score=236.81 Aligned_cols=731 Identities=13% Similarity=0.111 Sum_probs=394.0
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 000951 152 KDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGRYKAAFK 231 (1211)
Q Consensus 152 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 231 (1211)
+.-+...|..+|.+. ++ ..-++.++|+.|+++++...-. +.|+.||- ..+++.+.+. +++.|.+
T Consensus 468 ~~~d~~lAl~iY~~a---~~------~~Kvi~~l~~~gq~~ki~~Y~~---~~~~~pDy---~~ll~~~~~~-~P~~~~~ 531 (1630)
T 1xi4_A 468 KSVDPTLALSVYLRA---NV------PNKVIQCFAETGQVQKIVLYAK---KVGYTPDW---IFLLRNVMRI-SPDQGQQ 531 (1630)
T ss_pred HhcChHHHHHHHHhc---CC------cHHHHHHHHHhCCHHHHHHHHh---ccCCCccH---HHHHHHHhhc-ChHHHHH
Confidence 333555566665532 11 2356667777777777666643 23555553 3455555544 4666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------------------CHHH
Q 000951 232 LIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITP-----------------------------NEVT 282 (1211)
Q Consensus 232 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------------------~~~~ 282 (1211)
+-..+.... |.....+.+++.+...+...++..++-+..+.+-+- +.+-
T Consensus 532 fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd 609 (1630)
T 1xi4_A 532 FAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYD 609 (1630)
T ss_pred HHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCcccccc
Confidence 666655542 234445666777777777777777666665543221 2223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC--CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhH-------
Q 000951 283 YNTLINGFVKEGKIQVASRVFDEMSMLN--FS-PNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVS------- 352 (1211)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------- 352 (1211)
+..+...|-+.|-+..|++.|.++..-. +. .....-.-++..+. .=..+.+++.+++|...+++-|...
T Consensus 610 ~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~k 688 (1630)
T 1xi4_A 610 RAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLECLRAMLSANIRQNLQICVQVASK 688 (1630)
T ss_pred HHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHH
Confidence 4566677888899999999887653210 00 01111122333333 3567888899988887554433222
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhC
Q 000951 353 ------YGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKM------------FKD 414 (1211)
Q Consensus 353 ------~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~ 414 (1211)
-..++..+-+.+.++.-.-.+.... +..-|..+....|.+.++.|++.+.+++.++- .+.
T Consensus 689 y~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~ 766 (1630)
T 1xi4_A 689 YHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 766 (1630)
T ss_pred HHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhC
Confidence 2233333333333333333333222 23457788888999999999888877776541 111
Q ss_pred CC---CC------------CHhhH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------------H
Q 000951 415 GL---NP------------DLITF------SVLINGFCKVGMTRKAKAVLCKMYRDGLVPNKIIYS-------------T 460 (1211)
Q Consensus 415 g~---~p------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~ 460 (1211)
.. .| +.+.| ...|..|.+.-++.++-.+...++.-+. +..... .
T Consensus 767 kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~~~ 844 (1630)
T 1xi4_A 767 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFSTDE 844 (1630)
T ss_pred CCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCHHH
Confidence 10 11 11111 1233344333332222222222222111 111111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH-------------------------------
Q 000951 461 LIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGKVCEA------------------------------- 509 (1211)
Q Consensus 461 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A------------------------------- 509 (1211)
|+...-+.++..--...++.-...|.. +..++|+|+..|...++-.+.
T Consensus 845 lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~ 923 (1630)
T 1xi4_A 845 LVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYER 923 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcc
Confidence 222222333333333334444444443 666666666666544332111
Q ss_pred ---------------------HH--------HHHHHH---------------h----cCCCCCHHHHHHHHHHHHhcCCH
Q 000951 510 ---------------------ED--------YVGHMK---------------R----IGVVPNSITFDCMIDGYGTLGDG 541 (1211)
Q Consensus 510 ---------------------~~--------~~~~~~---------------~----~g~~p~~~~~~~li~~~~~~g~~ 541 (1211)
+- +|...+ . ....|+ -....+.+|...|.+
T Consensus 924 g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pe--eVs~~vKaf~~aglp 1001 (1630)
T 1xi4_A 924 GQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPE--EVSVTVKAFMTADLP 1001 (1630)
T ss_pred cCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHH--HhHHHHHHHHhCCCH
Confidence 00 000000 0 000111 112234455555666
Q ss_pred HHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951 542 LKAFSMFDEMVKLGH--HPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLD 619 (1211)
Q Consensus 542 ~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 619 (1211)
.+|++++++.+-.+- ..+...-+.++.+..+. +.....++...+.. .....++..+...|.+++|..+|+
T Consensus 1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666665552210 01122222233333332 23333333333221 012235556666777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 000951 620 EMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYP 699 (1211)
Q Consensus 620 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 699 (1211)
+... .....+.++ -..+++++|.++++++ -+..+|..+..++...|++++|+..|.+. .
T Consensus 1074 Ka~~-----~~~A~~VLi---e~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1074 KFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 6521 122222222 2556677777776644 12556777777777777777777777543 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 000951 700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLIL 779 (1211)
Q Consensus 700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 779 (1211)
|...|..++..+.+.|++++|.+.+...++.. +++.....++.+|.+.+++++ ++.| ++ .|+...|..++.
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQVGD 1203 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHH
Confidence 56666777777777777777777777766543 332223347777777777664 3333 22 245556666777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhh
Q 000951 780 GFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQE 859 (1211)
Q Consensus 780 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 859 (1211)
.|...|++++|..+|..+ ..|..++.+|.+.|++++|++.++++ .+..+|..+..+|...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 777777888887777775 26777777777777788887777766 345777777777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 000951 860 SHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH--CGKVEEAMLVLNRM 937 (1211)
Q Consensus 860 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~eA~~~~~~~ 937 (1211)
|...... +.-+...+..++..|...|.+++|+.+++..+... +.....|..++.+|.+ -++..++++.|..-
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7776654 22233445677777788888888888887777553 4445566666655554 35577777777765
Q ss_pred HhCCcc----cCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 938 LRMRLV----PTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 938 ~~~~~~----p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
+..++. .+...|..+...|.+.|+++.|..
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 544320 156677888888888888887773
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.8e-28 Score=284.19 Aligned_cols=204 Identities=15% Similarity=0.173 Sum_probs=123.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHcCC---------hHH
Q 000951 159 VWLLFDDMLDRKICPN-VATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVTYNTLLNWYCKKGR---------YKA 228 (1211)
Q Consensus 159 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 228 (1211)
+..+..++.+.+..+. ...++.+|.+||+.|++++|.++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444444443322 223555566666666666666666666666666666666666666655443 456
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000951 229 AFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSM 308 (1211)
Q Consensus 229 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 308 (1211)
|.++|++|...|+.||..||++||++|++.|++++|..+|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHhHHHHHHHHHHh
Q 000951 309 LNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMGLRPNEVSYGALLNGFCK 362 (1211)
Q Consensus 309 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 362 (1211)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666654
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.3e-28 Score=282.16 Aligned_cols=205 Identities=21% Similarity=0.274 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCCCCH-hHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hH
Q 000951 193 KAGYLLRKMEESGYVPNI-VTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNR---------SA 262 (1211)
Q Consensus 193 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~ 262 (1211)
.+..+..++.+.+..+.. ..++.+|.+|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345566666666655443 35777888888888888888888888888888888888888888877654 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000951 263 KGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMME 342 (1211)
Q Consensus 263 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 342 (1211)
+|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666777766666677777777777777777777777777776666666666667777766666666666666666666
Q ss_pred HCCCCcCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 000951 343 EMGLRPNEVSYGALLNGFCKHAKFDLARSLLERMRTNGISISCIAYTSVIDGLCK 397 (1211)
Q Consensus 343 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~ 397 (1211)
+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-23 Score=250.89 Aligned_cols=271 Identities=11% Similarity=-0.010 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHc---cCChHHHHHHHHHHHH-----CCCC-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 736 LATYNILLHGYSK---KKDLLMCSMLLNTMKM-----EGLL-------P-DKLTCHSLILGFCETGMLEVGFKFLKKMIA 799 (1211)
Q Consensus 736 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 799 (1211)
...+..++..+.. .|++++|+..|+++++ .... | +..++..++..+...|++++|+..++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566666666554 8889999999988887 3112 2 234667778888899999999999999988
Q ss_pred cCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhH
Q 000951 800 EGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQ 878 (1211)
Q Consensus 800 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~ 878 (1211)
.. |+..++..++.+|...|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++ ..|+ ..+
T Consensus 266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 340 (514)
T 2gw1_A 266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFP 340 (514)
T ss_dssp HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHH
T ss_pred hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHH
Confidence 64 337788888889999999999999999988753 34577888899999999999999999999988 6675 478
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-C----HHHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-T----IATFTTLI 953 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~----~~~~~~L~ 953 (1211)
+..++.++...|++++|...|+++.+. .+.+..++..++.++...|++++|+..|+++++..+.. + ..+|..++
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 888899999999999999999999876 35567788889999999999999999999998865441 1 33888999
Q ss_pred HHhhh---hCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 954 HKFCK---EAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 954 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
.++.. .|++++|+..++..... .|+. .++..++.+|...|++++|.+.+++..+ +.|+.
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 99999 89999999998877765 6754 4788888899999999999999998876 45555
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-23 Score=252.44 Aligned_cols=273 Identities=9% Similarity=-0.079 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCC-------C-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 000951 701 TIAFNAVMDGFSR---MGNMMMANDLLSTMRS-----RKLC-------P-SLATYNILLHGYSKKKDLLMCSMLLNTMKM 764 (1211)
Q Consensus 701 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 764 (1211)
...+......+.. .|++++|...|+++.+ .... | +..+|..++..+...|++++|+..|+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444544 7899999999998886 2112 2 467788899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhH
Q 000951 765 EGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQ 844 (1211)
Q Consensus 765 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 844 (1211)
. .|+...+..++.+|...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.. +.+...+
T Consensus 266 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 L--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp H--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred h--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 4 4556678888899999999999999999999853 3356788899999999999999999999998854 3357789
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHH
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMV 918 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~ 918 (1211)
..++..|...|++++|+..|+++++ ..|+ ..++..++.++...|++++|...|+++.+.... +. ..++..++
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 9999999999999999999999998 6675 478999999999999999999999999864211 11 33889999
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 919 RGLAH---CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 919 ~~~~~---~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
.++.. .|++++|+..|+++++..+. +..+|..++.+|...|++++|...|+..... .|+..
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999 99999999999999998765 8889999999999999999999999987776 78665
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.6e-22 Score=234.37 Aligned_cols=324 Identities=12% Similarity=-0.013 Sum_probs=143.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 000951 594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV 673 (1211)
Q Consensus 594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 673 (1211)
+...+..++..+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|+..|+++++.+ +.+...+..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 34445555555555555555555555554432 2234444445555555555555555555554432 22244444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 000951 674 DGLFKAGQSKAAMHISKIMDKEGVYPDT----IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK 749 (1211)
Q Consensus 674 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 749 (1211)
.+|...|++++|...|+.+.+. .|+. ..+..++..+.. ..+..++..+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 4444444444444444444433 2221 222222222100 0111223334445
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHH
Q 000951 750 KDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDL 828 (1211)
Q Consensus 750 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 828 (1211)
|++++|+..|+++++. .| +...+..++.+|...|++++|+..++++++.. +.+..++..++.+|...|++++|++.
T Consensus 157 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555542 22 33444445555555555555555555554431 22344455555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHH------------HHHHHhhcchhhHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCC
Q 000951 829 FNIMNMLGVVPDTNTQDAI------------IMGLKRIAAFQESHFVLRGMAEKGLTPK-----CTQYITLINGMCRVGN 891 (1211)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~eA~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~ 891 (1211)
|+++.+.. +.+...+..+ +..|...|++++|+..|+++++ ..|+ ...+..++.++.+.|+
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCC
Confidence 55554321 1112222222 4444444455555555554444 3333 1234444444444444
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
+++|+..++++++.. +.+..+|..++.++...|++++|...|+++++..|. +..++..++
T Consensus 311 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 444444444444331 333444444444444444444444444444444333 444444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4e-22 Score=242.34 Aligned_cols=433 Identities=14% Similarity=0.060 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 000951 526 ITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAET 605 (1211)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 605 (1211)
..|..+...+.+.|++++|+..|+++++.. +.+..++..+..++...|++++|.+.++.+.+..+. +..++..++..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 344555555555566666666666555542 234555555555555566666666666655554443 555666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHHcC
Q 000951 606 CKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKR-----TFSPNNVMFTCLVDGLFKAG 680 (1211)
Q Consensus 606 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g 680 (1211)
...|++++|+..|+ .... .|+... ..+..+...+...+|...+++++... ...|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 66666666666664 3222 122111 12223344444566666666665431 012222 2233344455
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCCC--------HHHHHHHH
Q 000951 681 QSKAAMHISKIMDKEGVYPDT-IAFNAVMDGFS--------RMGNMMMANDLLSTMRSRKLCPS--------LATYNILL 743 (1211)
Q Consensus 681 ~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~ 743 (1211)
+.+.+...+...... .+.. .....+...+. ..|++++|..+++++.+. .|+ ..++..++
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTG 250 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHH
Confidence 555554443332211 1221 12222222222 235788888888888853 443 23466677
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHH
Q 000951 744 HGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMG 823 (1211)
Q Consensus 744 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 823 (1211)
..+...|++++|+..|+++++ ..|+...+..++..|...|++++|+..++++++.. +.+..++..++.+|...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 788888899999999998888 45666777778888888899999999999888753 335677888888888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
+|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++ ..|+ ...+..++.++...|++++|...|+++
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999998888743 23467788888888899999999999999888 5675 467888888888999999999999988
Q ss_pred HHcCCC-----CchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 903 EALGIS-----SSDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 903 ~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
++.... .....+..++.++... |++++|+..|+++++..|. +..+|..++.+|...|++++|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 754211 1122345566777777 8899999999999887765 78888899999999999999999
Q ss_pred HHHHHHhcCCCCchH
Q 000951 968 LKGTMELSGVKLDVV 982 (1211)
Q Consensus 968 ~~~~~~~~~~~p~~~ 982 (1211)
.|+..... .|+..
T Consensus 484 ~~~~al~~--~~~~~ 496 (537)
T 3fp2_A 484 LFEDSAIL--ARTMD 496 (537)
T ss_dssp HHHHHHHH--C--CH
T ss_pred HHHHHHHh--CCCcH
Confidence 88877766 66544
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.1e-21 Score=232.30 Aligned_cols=328 Identities=16% Similarity=0.053 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 000951 666 NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLH 744 (1211)
Q Consensus 666 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 744 (1211)
...+..++..+.+.|++++|+..|+.+++.. +.+...+..++..|...|++++|...|+++.+. .| +..+|..++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 3344444444444444444444444443321 223444444444444444444444444444432 22 3444444455
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCH----HH------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951 745 GYSKKKDLLMCSMLLNTMKMEGLLPDK----LT------------CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT 808 (1211)
Q Consensus 745 ~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 808 (1211)
+|.+.|++++|+..|+++.+ ..|+. .. +..++..+...|++++|+..++++++.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 55555555555555555444 22322 22 2234566889999999999999999853 346788
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHH-----
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITL----- 882 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l----- 882 (1211)
+..++.+|.+.|++++|++.|+++.+.. +.+..+|..++.+|...|++++|+..|+++++ ..|+. ..+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHH
Confidence 9999999999999999999999998743 35688999999999999999999999999998 77765 444444
Q ss_pred -------HHHHHhcCChhhHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH
Q 000951 883 -------INGMCRVGNFQGAFKLKDEMEALGISSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT 951 (1211)
Q Consensus 883 -------~~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~ 951 (1211)
+.++.+.|++++|...|+++++.. +.+ ..++..++.++.+.|++++|+..++++++..|. +..+|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 899999999999999999998763 223 347889999999999999999999999998755 8899999
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHH------------HHHHhCC-----ChhHHHHHHHH
Q 000951 952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLI------------SGLCANG-----DVMPAFELYEE 1006 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 1006 (1211)
++.+|...|++++|+..|+..... .|+.. .+..++ ..|...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 999999999999999999877765 88654 677777 3455555 44566766665
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.9e-22 Score=241.54 Aligned_cols=427 Identities=14% Similarity=0.077 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 000951 560 IFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAG 639 (1211)
Q Consensus 560 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 639 (1211)
...+..+...+.+.|++++|...|+.+++..+. ++..+..++.+|.+.|++++|++.|+++++.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456677777888888888888888888877654 67788888888888888888888888888764 3356778888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHh
Q 000951 640 LCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE------GVYPDTIAFNAVMDGFSR 713 (1211)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~ 713 (1211)
+...|++++|+..|+ .+. ..|+.. ...+..+...+....|...++.++.. ...|+. ..+..+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 888888888888885 443 233321 11233445555667788888877543 112332 23334555
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH--------HHHHH
Q 000951 714 MGNMMMANDLLSTMRSRKLCPS-LATYNILLHGYSKK--------KDLLMCSMLLNTMKMEGLLPDK--------LTCHS 776 (1211)
Q Consensus 714 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~--------~~~~~ 776 (1211)
..+.+.+...+..... ..+. ......+...+... |++++|+..|+++++ ..|+. .++..
T Consensus 173 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchhhHHHHHHHHH
Confidence 5666555544433321 2222 22334444443332 489999999999987 44542 24666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 000951 777 LILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA 856 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 856 (1211)
++..+...|++++|+..++++++. .|+...+..++.+|...|++++|++.|+++.+.. +.+..+|..++..|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 778889999999999999999985 4567888899999999999999999999998754 3458889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 000951 857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLN 935 (1211)
Q Consensus 857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 935 (1211)
+++|+..|+++++ ..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|+..|+
T Consensus 326 ~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 326 YKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998 6675 4789999999999999999999999999873 6677889999999999999999999999
Q ss_pred HHHhCCccc-----CHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhH
Q 000951 936 RMLRMRLVP-----TIATFTTLIHKFCKE----------AKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 936 ~~~~~~~~p-----~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 999 (1211)
++++..+.. ....+..++.++... |++++|+..|+..... .|+. ..+..++.+|...|++++
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 999865432 123356667888888 9999999999987766 6754 588999999999999999
Q ss_pred HHHHHHHHHHc
Q 000951 1000 AFELYEEMKHK 1010 (1211)
Q Consensus 1000 a~~~~~~~~~~ 1010 (1211)
|.+.+++..+.
T Consensus 481 A~~~~~~al~~ 491 (537)
T 3fp2_A 481 AIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998773
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.1e-19 Score=202.18 Aligned_cols=338 Identities=13% Similarity=0.024 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 000951 595 TVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVD 674 (1211)
Q Consensus 595 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 674 (1211)
+..+..++..+...|++++|+..|+++++.. +.+...+..+...+...|++++|+..|+++++.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHH
Confidence 3444555555555555555555555555432 2234445555555555555555555555555432 223344444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 000951 675 GLFKAGQSKAAMHISKIMDKEGVYP----DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK 750 (1211)
Q Consensus 675 ~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 750 (1211)
.+...|++++|...++.+.+. .| +...+..+...+. ...+..++..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 555555555555555555433 22 1111111110000 011122234444445
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 751 DLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 751 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
++++|+..++++.+. .| +...+..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|.+.|
T Consensus 135 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 135 DYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555554442 22 33334444444444455555555444444421 223344444444444444444444444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 000951 830 NIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISS 909 (1211)
Q Consensus 830 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 909 (1211)
+++.+.. +.+...+..+... . .......++..+...|++++|...|+++.+.. +.
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 266 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 266 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 4444321 1111111110000 0 00011233555666666666666666665542 22
Q ss_pred chH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HH
Q 000951 910 SDV----AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SY 984 (1211)
Q Consensus 910 ~~~----~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~ 984 (1211)
+.. .+..++.++...|++++|++.|+++++..|. ++.+|..++.++...|++++|...|+..... .|+.. .+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 343 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIR 343 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 221 2334566666666666666666666665543 5666666666666666666666666655443 55433 44
Q ss_pred HHHHHHH
Q 000951 985 NVLISGL 991 (1211)
Q Consensus 985 ~~l~~~~ 991 (1211)
..+..++
T Consensus 344 ~~l~~~~ 350 (359)
T 3ieg_A 344 EGLEKAQ 350 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.7e-19 Score=201.77 Aligned_cols=207 Identities=12% Similarity=0.088 Sum_probs=138.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN 891 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 891 (1211)
+..+...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++ ..|+ ..++..++.++...|+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 344555555555555555554432 22344555555555555555555555555554 4443 3455555555555555
Q ss_pred hhhHHHHHHHHHHcCCCCchHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH----HHHHHHHHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAE------------SAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI----ATFTTLIHK 955 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~----~~~~~L~~~ 955 (1211)
+++|...|+++.+.. +.+...+ ..++..+.+.|++++|+..++++++..+. +. ..+..++.+
T Consensus 204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 555555555555442 2222222 23477899999999999999999997755 44 346679999
Q ss_pred hhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHh
Q 000951 956 FCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISK 1028 (1211)
Q Consensus 956 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 1028 (1211)
+...|++++|+..++..... .|+ ...+..++.+|...|++++|.+.+++..+ +.|+. ..+..+......
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 99999999999999987776 774 55889999999999999999999999976 56765 666666655443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=4.6e-18 Score=202.97 Aligned_cols=351 Identities=14% Similarity=0.071 Sum_probs=250.7
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCC
Q 000951 594 DTVAYNTILAETCK----SGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCR----KGKVVSALLFFEKVVSKRTFSPN 665 (1211)
Q Consensus 594 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~ 665 (1211)
++..+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+..|+++.+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 55666666777766 677777777777777654 56666677777776 777777888777777643 4
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH
Q 000951 666 NVMFTCLVDGLFK----AGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCPSLA 737 (1211)
Q Consensus 666 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~ 737 (1211)
...+..|...|.. .+++++|...|+...+.| +...+..+...|.. .+++++|..+|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5556667777776 677778887777776654 45566667777766 677788888888777643 567
Q ss_pred HHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhH
Q 000951 738 TYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTF 809 (1211)
Q Consensus 738 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 809 (1211)
++..|+..|.. .+++++|+..|++..+.| +..++..+...|.. .+++++|+..++++.+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 77777777776 777888888888777643 45566667777665 677888888888777643 44566
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-----cchhhHHHHHHHHHHcCCCCChhHHH
Q 000951 810 NVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-----AAFQESHFVLRGMAEKGLTPKCTQYI 880 (1211)
Q Consensus 810 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~eA~~~~~~~~~~g~~p~~~~~~ 880 (1211)
..++.+|.. .+++++|+++|+++.+. .+...+..++..|... +++++|+.+|+++.+.| +..++.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 677777776 77788888888877753 3456677777777766 77888888888877732 345667
Q ss_pred HHHHHHHhcC---ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 881 TLINGMCRVG---NFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 881 ~l~~~~~~~g---~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
.++..|...| ++++|+++|+++.+.+ ++.++..++.+|.. .+++++|+..|+++.+.+ ++.++..|+
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777655 6778888888877653 46677777777777 677888888888887764 566777788
Q ss_pred HHhhh----hCCHHHHHHHHHHHHhc
Q 000951 954 HKFCK----EAKFVDALKLKGTMELS 975 (1211)
Q Consensus 954 ~~~~~----~g~~~~A~~~~~~~~~~ 975 (1211)
.+|.. .+++++|...|+...+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 87777 77888888887776665
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.2e-17 Score=199.38 Aligned_cols=369 Identities=12% Similarity=0.005 Sum_probs=289.1
Q ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 000951 559 SIFTYGSLLKGLCK----GGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCK----SGNLWEAIVLLDEMVQFNLLPDR 630 (1211)
Q Consensus 559 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 630 (1211)
+...+..+...|.. .+++++|...|....+.+ ++..+..|...|.. .+++++|+..|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555555 567777777777766653 45667777777777 778888888888887764 56
Q ss_pred HHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 000951 631 YTYTILLAGLCR----KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFK----AGQSKAAMHISKIMDKEGVYPDTI 702 (1211)
Q Consensus 631 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~ 702 (1211)
..+..|...|.. .+++++|+..|+++.+.+ +...+..|...|.. .+++++|.+.|+...+.| +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 667777777777 778888888888887754 45667777777777 778888888888887764 567
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 000951 703 AFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSK----KKDLLMCSMLLNTMKMEGLLPDKLTC 774 (1211)
Q Consensus 703 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~ 774 (1211)
.+..+...|.. .+++++|..+|++..+.+ +..++..++..|.. .+++++|+..|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 77778888877 788899999998888653 66778888888876 788999999999988753 45566
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951 775 HSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA-----GEMGKAFDLFNIMNMLGVVPDTNTQD 845 (1211)
Q Consensus 775 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~ 845 (1211)
..+...|.. .+++++|+..|+++.+.+ +...+..|+.+|... +++++|++.|+++.+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 667777877 889999999999988753 456778888888887 89999999999998753 567888
Q ss_pred HHHHHHHhhc---chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951 846 AIIMGLKRIA---AFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMV 918 (1211)
Q Consensus 846 ~l~~~~~~~g---~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~ 918 (1211)
.++..|...| ++++|+.+|+++.+. .+...+..++.+|.. .+++++|...|+++.+.+ ++.++..++
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8998888755 889999999999984 356788899999998 899999999999998865 477888999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCcc-c-CHHHHHHHHHHhhh
Q 000951 919 RGLAH----CGKVEEAMLVLNRMLRMRLV-P-TIATFTTLIHKFCK 958 (1211)
Q Consensus 919 ~~~~~----~g~~~eA~~~~~~~~~~~~~-p-~~~~~~~L~~~~~~ 958 (1211)
.+|.. .+++++|...|+++++.++. | ++.++..|+.++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99988 89999999999999998743 2 56677777776554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.9e-19 Score=198.48 Aligned_cols=286 Identities=11% Similarity=-0.019 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 000951 700 DTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL 777 (1211)
Q Consensus 700 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 777 (1211)
+...+..++..+...|++++|..+|+++.+. .| +...+..++.++...|++++|+..++++++. .| +...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 3344455555566666666666666666543 23 4444555556666666666666666666652 33 34455556
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 000951 778 ILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA 856 (1211)
Q Consensus 778 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 856 (1211)
+..+...| ++++|+..++++++.. +.+...+..++.+|...|++++|++.|+++.+.. +.+...+..++..|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 66666666 6666666666666532 2234556666666666677777777666666533 2234555666666667777
Q ss_pred hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC--------CCCchHHHHHHHHHHHhcCCH
Q 000951 857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG--------ISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
+++|+..|+++++ ..|+ ...+..++..+...|++++|...++++.+.. .+....++..++.++...|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 7777777777666 5554 3566667777777777777777777765431 133345666777777777777
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHH-HhCCC
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGL-CANGD 996 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~-~~~g~ 996 (1211)
++|+..|+++++..+. +..+|..++.++...|++++|...|+.... +.|+.. .+..++.++ ...|+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 7777777777776544 666777777777777777777777664433 366433 666666665 34444
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.8e-18 Score=193.46 Aligned_cols=292 Identities=9% Similarity=-0.053 Sum_probs=220.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 000951 663 SPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNI 741 (1211)
Q Consensus 663 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 741 (1211)
+.+...+..++..+...|++++|.++++.+++.. +.+...+..++..+...|++++|...++++.+. .| +...|..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 3344556666677777777777777777776542 233445555666677777888888887777753 34 5677777
Q ss_pred HHHHHHccC-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 000951 742 LLHGYSKKK-DLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA 819 (1211)
Q Consensus 742 l~~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 819 (1211)
++..+...| ++++|+..|+++++ ..| +...|..++..+...|++++|+..++++++.. +.+...+..++.+|...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 888888888 78888888888876 344 44567777788888888888888888888753 22355666788888888
Q ss_pred CcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-------CC-ChhHHHHHHHHHHhcCC
Q 000951 820 GEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-------TP-KCTQYITLINGMCRVGN 891 (1211)
Q Consensus 820 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-------~p-~~~~~~~l~~~~~~~g~ 891 (1211)
|++++|++.|+++.+.. +.+...+..++..|...|++++|+..|+++++... .| ...++..++.++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888887643 34577788888888888888888888888886211 03 24788999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh-hhhCCHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF-CKEAKFV 963 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~-~~~g~~~ 963 (1211)
+++|...|+++++.. +.+..++..++.++...|++++|.+.|+++++..|. +..++..++.++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 999999999998774 667888999999999999999999999999998765 888999999988 5666654
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=9.3e-17 Score=193.76 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 000951 524 NSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILA 603 (1211)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 603 (1211)
|..+|..++. +.+.|++++|..+|+++++. .+.+...|..++..+.+.|++++|..+|++++...| +...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 5566776666 35667777777777777654 233455666666666666666777766666666543 4445555554
Q ss_pred HH-HHcCCHHHHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q 000951 604 ET-CKSGNLWEAIV----LLDEMVQF-NLLP-DRYTYTILLAGLCR---------KGKVVSALLFFEKVVS 658 (1211)
Q Consensus 604 ~~-~~~g~~~~A~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~ 658 (1211)
.. ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|..+|+++++
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 22 23455554443 55544432 3222 34445555544333 4555555566655555
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.2e-16 Score=192.65 Aligned_cols=420 Identities=8% Similarity=-0.032 Sum_probs=250.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951 559 SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLA 638 (1211)
Q Consensus 559 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 638 (1211)
+...+..++. +...|++++|..+|+++++..|. +...|..++..+.+.|++++|..+|++++... |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5556666666 35567777777777777665543 56667777777777777777777777776642 56555655553
Q ss_pred H-HHhCCChHHHHH----HHHHHHHcCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHH
Q 000951 639 G-LCRKGKVVSALL----FFEKVVSKRTFSP-NNVMFTCLVDGLFK---------AGQSKAAMHISKIMDKEGVYPDTIA 703 (1211)
Q Consensus 639 ~-~~~~g~~~~A~~----~~~~~~~~~~~~p-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~ 703 (1211)
. ....|+.++|.+ +|++++..-+..| +...|...+..... .|+++.|..+|+.+++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 234555555543 5555554321222 34455555554433 4556666666666655211111122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH------HHCC---CCCC----
Q 000951 704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTM------KMEG---LLPD---- 770 (1211)
Q Consensus 704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~g---~~p~---- 770 (1211)
|..........|. ..+. .++ ....+++..|..++.+. .+.. +.|+
T Consensus 168 ~~~~~~~e~~~~~-~~~~-------------------~~l--~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAK-------------------KMI--EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH-HHHH-------------------HHH--HTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch-hHHH-------------------HHH--HHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2221111000000 0000 000 01234556666655542 2211 2332
Q ss_pred ----HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCcHH-------H
Q 000951 771 ----KLTCHSLILGFCET----GML----EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE-------AGEMG-------K 824 (1211)
Q Consensus 771 ----~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~ 824 (1211)
...|...+...... ++. ..+..+|++++.. .+.+...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 12343333222111 222 3677788888775 23356677777777665 67776 8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
|+++|+++++.-.+.+...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|+++
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888887521233477788888888888888888888888888 66753 46778888888888888888888888
Q ss_pred HHcCCCCchHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCc
Q 000951 903 EALGISSSDVAESAMVRG-LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLD 980 (1211)
Q Consensus 903 ~~~~~~~~~~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~ 980 (1211)
++.. +.+...+...+.+ +...|++++|..+|+++++..|. ++..|..++..+.+.|++++|..+|+...... ..|+
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7652 2333444433333 33578888888888888887654 77888888888888888888888888766552 2332
Q ss_pred --hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 981 --VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 981 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
...|...+......|+.+.+.++.+++.+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12566666667778888888888887765
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.3e-18 Score=197.64 Aligned_cols=284 Identities=11% Similarity=-0.053 Sum_probs=203.2
Q ss_pred hcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 000951 713 RMGNMMMAND-LLSTMRSRKL-CP--SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGML 787 (1211)
Q Consensus 713 ~~g~~~~A~~-~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 787 (1211)
..|++++|.. .|++...... .| +...+..++..+.+.|++++|+..|+++++. .| +..++..++.+|...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCH
Confidence 3466666666 6655442211 11 2345666777777777777777777777763 34 445666666777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHH----------------HHHHHH
Q 000951 788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQD----------------AIIMGL 851 (1211)
Q Consensus 788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~~ 851 (1211)
++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.... +...+. .+...+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 77777777777643 234566777777777777777777777777664321 122221 344444
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE 928 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 928 (1211)
..|++++|+..|+++++ ..|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.++...|+++
T Consensus 193 -~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp -HHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred -hcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 88999999999999998 5565 5788889999999999999999999998763 566788899999999999999
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc------------hHHHHHHHHHHHhCCC
Q 000951 929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD------------VVSYNVLISGLCANGD 996 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~ 996 (1211)
+|+..|+++++..|. +..+|..++.+|.+.|++++|+..|+..... .|+ ..+|..++.+|...|+
T Consensus 269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999988755 7889999999999999999999998876654 453 3578899999999999
Q ss_pred hhHHHHHHHHH
Q 000951 997 VMPAFELYEEM 1007 (1211)
Q Consensus 997 ~~~a~~~~~~~ 1007 (1211)
+++|..++++.
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999887643
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.9e-17 Score=195.63 Aligned_cols=380 Identities=9% Similarity=-0.084 Sum_probs=201.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----
Q 000951 594 DTVAYNTILAETCKSGNLWEAIVLLDEMVQF--------NLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRT---- 661 (1211)
Q Consensus 594 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---- 661 (1211)
....||.|+..+...|++++|++.|++.++. ..+....+|..+...|...|++++|...|+++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777766541 1112345566666666677777777766666654210
Q ss_pred -CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHCCCCC
Q 000951 662 -FSP-NNVMFTCLVDGLFKA--GQSKAAMHISKIMDKEGVYPDTIAFNAVMDGF---SRMGNMMMANDLLSTMRSRKLCP 734 (1211)
Q Consensus 662 -~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~p 734 (1211)
..+ ...++..+..++... +++++|+..|+++++.. +.++..+..+..++ ...++.++|...+++..+. .|
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 011 133444444444333 34566666666665442 22333333333332 2345555555555555532 33
Q ss_pred -CHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 000951 735 -SLATYNILLHGYS----KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT 808 (1211)
Q Consensus 735 -~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 808 (1211)
+..++..++..+. ..|++++|.+.++++... .| +..++..++..|...|++++|+..++++++.. +.+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3444444443332 234555566666555552 23 33445555555666666666666666655531 123444
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 887 (1211)
+..++.+|...+....+.. ...........+.+++|+..|+++.+ ..|+. .++..++.++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH
Confidence 4555544432211111000 00011111223456788888888888 66754 77888999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchH--HHHHHHHH-HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDV--AESAMVRG-LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD 964 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~ 964 (1211)
..|++++|+..|+++++...++... .+..++.. +...|++++|+..|+++++..+. +. .+. +....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~-~~~---------~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SR-EKE---------KMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CH-HHH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cH-HHH---------HHHHH
Confidence 9999999999999998764333322 33444443 45778899999999999987654 22 221 12233
Q ss_pred HHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951 965 ALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 965 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
+..+++..... .|+ ..+|+.++.+|...|++++|++.+++.++.
T Consensus 415 l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 415 LQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444433333 664 458899999999999999999999988774
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.3e-17 Score=192.13 Aligned_cols=379 Identities=10% Similarity=-0.041 Sum_probs=260.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC--------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 000951 559 SIFTYGSLLKGLCKGGNLKEAKRFLNSLHHI--------PSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQF-----N 625 (1211)
Q Consensus 559 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 625 (1211)
....|+.+...+...|++++|.+.|++.++. .......+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567899999999999999999999988653 11224678999999999999999999999988752 1
Q ss_pred -CC-CCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCC
Q 000951 626 -LL-PDRYTYTILLAGLCR--KGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDG---LFKAGQSKAAMHISKIMDKEGVY 698 (1211)
Q Consensus 626 -~~-p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~ 698 (1211)
.. ....++..+..++.. .+++++|+..|+++++.. +.+...+..+..+ +...++.++|++.++++++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 134566666666655 457999999999999964 2235555555544 345678889999999998763 3
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHH
Q 000951 699 PDTIAFNAVMDGFSR----MGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKL 772 (1211)
Q Consensus 699 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 772 (1211)
.+..++..+...+.. .|++++|...+++.... .| +..++..++..|...|++++|+..|+++++ ..| +..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 282 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNAY 282 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCChHH
Confidence 455666666555544 56789999999999864 45 788899999999999999999999999998 456 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK 852 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 852 (1211)
++..++.+|...+....+. ............+.+++|+..|+++.+.. +.+..++..++..|.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 6776776664322111110 01111112223345788899998887643 345778889999999
Q ss_pred hhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPKC----TQYITLING-MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV 927 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~-~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 927 (1211)
..|++++|+..|+++++ ..|+. ..+..++.. ....|++++|+..|+++++. .|+..... +..
T Consensus 346 ~~~~~~~A~~~~~kaL~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~ 412 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFS--KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMK 412 (472)
T ss_dssp HTTCHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHH
Confidence 99999999999999998 55543 234444443 45789999999999999876 33332221 223
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
..+.+++++.++.+|. ++.+|..||.+|...|++++|++.|+...+.
T Consensus 413 ~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4556777788887765 8889999999999999999999998866554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5e-18 Score=194.81 Aligned_cols=304 Identities=10% Similarity=-0.035 Sum_probs=190.2
Q ss_pred HHHhCCChHHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 000951 639 GLCRKGKVVSALL-FFEKVVSKRTFSP--NNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMG 715 (1211)
Q Consensus 639 ~~~~~g~~~~A~~-~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 715 (1211)
.+...|++++|+. .|++.++..+..| +...+..+...+...|++++|...++.+++.. +.+...+..+...|...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444556666665 5555544221111 12334455555555555555555555555442 233444555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHH
Q 000951 716 NMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLT-CHSLILGFCETGMLEVGFKF 793 (1211)
Q Consensus 716 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~ 793 (1211)
++++|...|+++.+. .| +..++..++.+|...|++++|+..|+++++ ..|+... +..+... .
T Consensus 113 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~-------~----- 176 (368)
T 1fch_A 113 QELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEG-------A----- 176 (368)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC------------------
T ss_pred CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH-------h-----
Confidence 555555555555432 22 444555555555555555555555555554 2232211 1100000 0
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC
Q 000951 794 LKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL 872 (1211)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~ 872 (1211)
.. ..+ ...+..+...+ ..|++++|++.|+++.+..... +..++..++..|...|++++|+..|+++++ .
T Consensus 177 --~~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 246 (368)
T 1fch_A 177 --GG----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--V 246 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred --hh----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 00 000 00111233444 8899999999999998754221 478889999999999999999999999998 6
Q ss_pred CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-------
Q 000951 873 TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP------- 944 (1211)
Q Consensus 873 ~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p------- 944 (1211)
.|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.+|.+.|++++|+..|+++++..|..
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 775 5789999999999999999999999998773 6678889999999999999999999999999876542
Q ss_pred ---CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 945 ---TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 945 ---~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
...+|..++.+|...|++++|..+++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 17899999999999999999999865
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.2e-18 Score=193.74 Aligned_cols=260 Identities=11% Similarity=-0.041 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR 814 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 814 (1211)
...|..++..+.+.|++++|+..|+++++. .| +..++..++.+|...|++++|+..++++++.. +.+..++..++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344666666677777777777777776663 33 45566666677777777777777777776642 223566667777
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCCC-hhh----------HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC---hhHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVPD-TNT----------QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK---CTQYI 880 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~---~~~~~ 880 (1211)
+|...|++++|++.|+++.+.. |+ ... +..++..|...|++++|+..|+++++ ..|+ ..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHH
Confidence 7777777777777777766532 22 222 23447778888888888888888887 4554 57788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
.++.++...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..|+++++..|. +..+|..++.+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 88888888888888888888888763 566778888888888888888888888888887655 6788888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951 961 KFVDALKLKGTMELSGVKLD-------------VVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 961 ~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
++++|+..|+..... .|+ ...|..++.++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888888888766654 443 34678888888888888887776543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=2.7e-17 Score=188.38 Aligned_cols=258 Identities=9% Similarity=-0.021 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 000951 704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGF 781 (1211)
Q Consensus 704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 781 (1211)
+..+...+.+.|++++|...|+++.+. .| +..+|..++.+|...|++++|+..|+++++. .| +..++..++.+|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 444444455555555555555555432 22 4555555555555556666666666555552 23 344555555666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 000951 782 CETGMLEVGFKFLKKMIAEGTMVD-----------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIM 849 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 849 (1211)
...|++++|+..++++++. .|+ ...+..++.+|...|++++|++.|+++.+..... +..+|..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 6666666666666666553 121 1233445778888889999999998888754221 5778888999
Q ss_pred HHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 000951 850 GLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVE 928 (1211)
Q Consensus 850 ~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 928 (1211)
.|...|++++|+..|+++++ ..|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988 6675 5788899999999999999999999998763 566888899999999999999
Q ss_pred HHHHHHHHHHhCCccc-----------CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 929 EAMLVLNRMLRMRLVP-----------TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p-----------~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
+|+..|+++++..|.. +..+|..|+.++...|+.+.|..+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999865431 36789999999999999999988754
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.6e-18 Score=186.32 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=34.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951 607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM 686 (1211)
Q Consensus 607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 686 (1211)
+.|++++|.+.++++ ++...|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 455566666655554 22335556666666666666666655331 34445555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 000951 687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEG 766 (1211)
Q Consensus 687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 766 (1211)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|+|++|...|.++
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 544444432 2334445555555555555555554442 133445555555555555555555555433
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH
Q 000951 767 LLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF 826 (1211)
Q Consensus 767 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 826 (1211)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 13444444444555555554444444 13344444444444444444443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.7e-16 Score=178.42 Aligned_cols=261 Identities=11% Similarity=-0.010 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK 815 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 815 (1211)
..+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|+..++++++.. +.+..++..++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 33455555666666666666666666553 23 44455555566666666666666666666542 2245556666666
Q ss_pred HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHhhcchhhHHHHHHHHHHcCCCCC-hhHH
Q 000951 816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAI--------------IM-GLKRIAAFQESHFVLRGMAEKGLTPK-CTQY 879 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~ 879 (1211)
|...|++++|++.|+++.+.. +.+...+..+ +. .+...|++++|+..++++++ ..|+ ...+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHH
Confidence 666666666666666666532 1122333332 33 47788999999999999998 5664 5788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE 959 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~ 959 (1211)
..++.++...|++++|.+.++++.+.. +.+..++..++.++...|++++|+..|+++++..+. +..+|..++.+|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 899999999999999999999998763 566788999999999999999999999999998765 788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCc-------------hHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 960 AKFVDALKLKGTMELSGVKLD-------------VVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 960 g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
|++++|+..++..... .|+ ...|..++.+|...|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998877665 565 347888999999999999999988654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.6e-16 Score=174.06 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=161.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951 713 RMGNMMMANDLLSTMRSRKLCPS--LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG 790 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 790 (1211)
..|++++|+..+++... ..|+ ......+..+|...|++++|+..++.. -.|+..++..+...+...++.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 35666666666665442 2332 234455566666677777666655331 233445556666666666777777
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 791 FKFLKKMIAEGTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 791 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
++.+++++..+..| +...+..++.+|...|++++|++.+++ +.+...+..++.+|.+.|++++|+..|+++++
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654333 345556666677777777777777765 34566677777777777777777777777776
Q ss_pred cCCCCChhHHHH----HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951 870 KGLTPKCTQYIT----LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT 945 (1211)
Q Consensus 870 ~g~~p~~~~~~~----l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~ 945 (1211)
..|+.. ... ....+...|++++|...|+++++. .+.+..+++.++.++.+.|++++|+..|+++++.+|. +
T Consensus 159 --~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 159 --QDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp --HCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred --hCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 456542 112 223333457778888888877766 4667777777788888888888888888888777655 7
Q ss_pred HHHHHHHHHHhhhhCCHHH-HHHHHHHHHhcCCCCchH
Q 000951 946 IATFTTLIHKFCKEAKFVD-ALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 946 ~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~ 982 (1211)
+.+|..++.++...|+.++ +..+++...+. .|+..
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 7777788877777787765 45666666555 67554
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2.5e-16 Score=177.10 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=171.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 000951 709 DGFSRMGNMMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGM 786 (1211)
Q Consensus 709 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 786 (1211)
..+...|++++|..+|+++.+. .| +...|..++.++...|++++|+..|+++++. .| +..++..++..|...|+
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444332 12 3444444444444444444444444444442 22 33344444444555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHH-------------H-HH-HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNV-------------L-MR-KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL 851 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 851 (1211)
+++|++.++++++... .+...+.. + .. ++...|++++|++.++++.+.. +.+...+..++..|
T Consensus 105 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 5555555555544311 11112222 2 33 4777888999999999888754 33678888999999
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA 930 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 930 (1211)
...|++++|+..++++++ ..|+ ..++..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|
T Consensus 183 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999988 6675 5788999999999999999999999998763 56778899999999999999999
Q ss_pred HHHHHHHHhCCccc-----------CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 931 MLVLNRMLRMRLVP-----------TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 931 ~~~~~~~~~~~~~p-----------~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
.+.|+++++..+.+ +..+|..++.++...|++++|..+++
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999876542 47889999999999999999999876
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=2.2e-17 Score=183.06 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=94.5
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 000951 571 CKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSAL 650 (1211)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 650 (1211)
.+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3567788888887776 23458888888888888888888888653 46667788888888888888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 000951 651 LFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSR 730 (1211)
Q Consensus 651 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 730 (1211)
.+++.+.+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 877777663 4456677788888888888888776664 356668888888888888888888888866
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 000951 731 KLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFN 810 (1211)
Q Consensus 731 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 810 (1211)
..|..|+.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+. ..+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 25778888888888888888888877 267788888888888888888855544321 2233344
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--hcchhhHHHHHHH
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR--IAAFQESHFVLRG 866 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~eA~~~~~~ 866 (1211)
.++..|.+.|++++|+.+++..+... +.-...|+.|+-+|.+ -++..|.+++|..
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777777777777777777776432 2224455555555543 3455555555543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=8.6e-16 Score=168.20 Aligned_cols=270 Identities=10% Similarity=0.004 Sum_probs=173.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 000951 675 GLFKAGQSKAAMHISKIMDKEGVYPDT--IAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDL 752 (1211)
Q Consensus 675 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 752 (1211)
-....|+++.|+...+..... .|+. .....+..+|...|++++|...++. .-+|+..++..++..+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344566666666665554322 2332 2334455666667777766665533 1234566666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHH
Q 000951 753 LMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNI 831 (1211)
Q Consensus 753 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 831 (1211)
++|++.+++++..+..|+ ...+..++.++...|++++|++.+++ +.+...+..++.+|.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776555563 33445555777777777777777766 34566777777777777777777777777
Q ss_pred HHHCCCCCChhhHHHH----HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951 832 MNMLGVVPDTNTQDAI----IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG 906 (1211)
Q Consensus 832 ~~~~~~~~~~~~~~~l----~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 906 (1211)
+.+.. |+.. ...+ +..+...|++++|+.+|+++++ ..|+ ...+..++.++.+.|++++|...|+++++..
T Consensus 156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77643 4322 2222 2333345778888888888887 4554 4777788888888888888888888887763
Q ss_pred CCCchHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 907 ISSSDVAESAMVRGLAHCGKVEE-AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 907 ~~~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
|.++.++..++.++...|+.++ +.++++++++.+|. ++.+. ....+.+.++++..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHH----HHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChHHH----HHHHHHHHHHHHHH
Confidence 5677778888888888888765 56788888887655 55443 23444445555444
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=196.02 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 000951 171 ICPNVATFNILINVSCVEGKLKKAGYLLRKMEE---SGYVPNIVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCT 247 (1211)
Q Consensus 171 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 247 (1211)
...-..|||++|++||+.|++++|..+|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344466899999999999999999999987764 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------hHHHHH
Q 000951 248 YNMFIDDLCRNNRS-AKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPN------SITYNE 320 (1211)
Q Consensus 248 ~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ 320 (1211)
||++|+++|+.|+. ++|.++|++|.+.|+.||.++|+++++++.+.+-++.. +++ ..++.|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccchHH
Confidence 99999999998885 67889999999999999999999988877665433333 333 2233433 455556
Q ss_pred HHHHHHhcC
Q 000951 321 LIDGHCCKG 329 (1211)
Q Consensus 321 li~~~~~~g 329 (1211)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 666666655
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=197.91 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=65.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951 210 IVTYNTLLNWYCKKGRYKAAFKLIDCMASKGIEADVCTYNMFIDDLCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLING 289 (1211)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 289 (1211)
..|||++|++||+.|++++|.++|++|.+. ...|+.||++|||+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G 174 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence 446666666666666666666666655432 122444555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHhHHHHHHHHH
Q 000951 290 FVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGN-FKEAFRLLAMMEEMGLRPNEVSYGALLNGF 360 (1211)
Q Consensus 290 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 360 (1211)
||+.|++++|.++|++|.+.|+.||++|||++|.++|+.|+ .++|.++|++|.+.|+.||.+||++++.++
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555555555555555555555555555555555555554 244555555555555555555555555443
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=1.7e-15 Score=171.26 Aligned_cols=245 Identities=7% Similarity=-0.024 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc-HHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 000951 772 LTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE-MGKAFDLFNIMNMLGVVPDTNTQDAIIMG 850 (1211)
Q Consensus 772 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 850 (1211)
..|..+..++...|++++|+..++++++.+ +.+..+|+.++.+|...|+ +++|++.|+++++.. +.+...|..++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456666777777888888888888888742 2246677888888888886 888888888887744 2357788888888
Q ss_pred HHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh-cCCHH
Q 000951 851 LKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH-CGKVE 928 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 928 (1211)
|...|++++|+..|+++++ ++|+. .+|..++.++...|++++|+..|+++++.. +.+..+|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888 77854 788888888888888888888888888773 5677788888888888 56557
Q ss_pred HH-----HHHHHHHHhCCcccCHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCC-----
Q 000951 929 EA-----MLVLNRMLRMRLVPTIATFTTLIHKFCKEA--KFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANG----- 995 (1211)
Q Consensus 929 eA-----~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g----- 995 (1211)
+| ++.|+++++.+|. +..+|..++.++...| ++++|++.++.+ ...|+.. .+..++.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 5888888888766 8888999998888887 688888877665 3467544 7788888887764
Q ss_pred ----ChhHHHHHHHHH-HHcCCccCh-hhHHHHHHHHH
Q 000951 996 ----DVMPAFELYEEM-KHKGLCPNS-TTYSVLIDAIS 1027 (1211)
Q Consensus 996 ----~~~~a~~~~~~~-~~~g~~p~~-~~~~~l~~~~~ 1027 (1211)
..++|+++++++ .+ +.|.. .-|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 257888888887 44 56766 67777766653
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=2.6e-15 Score=169.86 Aligned_cols=250 Identities=9% Similarity=-0.019 Sum_probs=207.6
Q ss_pred CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHhh
Q 000951 732 LCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGM-LEVGFKFLKKMIAEGTMVDCFT 808 (1211)
Q Consensus 732 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~ 808 (1211)
+.| +...|+.++.++...|++++|+..|+++++ +.| +..+|+.++.++...|+ +++|+..++++++.+ +.+..+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 344 467788888999999999999999999998 567 55678888899999997 999999999999853 235778
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 887 (1211)
|..++.+|...|++++|+..|+++++.. +.+...|..++.++.+.|++++|+..|+++++ ++|+ ..+|..++.++.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998754 34688999999999999999999999999999 8886 488999999999
Q ss_pred h-cCChhhH-----HHHHHHHHHcCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh
Q 000951 888 R-VGNFQGA-----FKLKDEMEALGISSSDVAESAMVRGLAHCG--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE 959 (1211)
Q Consensus 888 ~-~g~~~eA-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~ 959 (1211)
. .|..++| +..|+++++.. +.+..+|..++.++...| ++++|++.++++ +.++. +..++..|+.+|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHH
Confidence 8 6666888 58899998873 667889999999999988 689999999988 65544 788999999999987
Q ss_pred C---------CHHHHHHHHHHH-HhcCCCCchH-HHHHHHHHHH
Q 000951 960 A---------KFVDALKLKGTM-ELSGVKLDVV-SYNVLISGLC 992 (1211)
Q Consensus 960 g---------~~~~A~~~~~~~-~~~~~~p~~~-~~~~l~~~~~ 992 (1211)
| .+++|+++|+.+ ... +|... .|..++..+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 5 358999999877 544 88665 5666666544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.9e-15 Score=161.75 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HhhH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM--VD----CFTF 809 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 809 (1211)
...|..++..+...|++++|+..|+++++.. ++...+..++.+|...|++++|+..++++++.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777777654 55566666777777777777777777777663211 11 4566
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCR 888 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 888 (1211)
..++.+|...|++++|++.|+++.+.. |+ ...+...|++++|+..+++++. ..|+. ..+..++.++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence 777777777777777777777777632 33 2345566777788888877777 66643 667777777777
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
.|++++|...|+++++.. +.+..++..++.++...|++++|+..++++++..|. +..+|..++.++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 788888888888777653 556667777777777788888888888877776654 677777777777778888888777
Q ss_pred HHHHHhc
Q 000951 969 KGTMELS 975 (1211)
Q Consensus 969 ~~~~~~~ 975 (1211)
++.....
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7665544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.4e-15 Score=159.01 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLK 852 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 852 (1211)
.+..++..+...|++++|+..++++++.. +.+...+..++.++.+.|++++|++.|+++++.. +.+...|..++.+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33344444444444444444444444421 1123444444444555555555555555444422 122444445555555
Q ss_pred hh-----------cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 853 RI-----------AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 853 ~~-----------g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
.. |++++|+..|+++++ +.|+ ...+..++.++...|++++|+..|+++++.. .+..++..++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 54 777777777777776 6664 3666677777777777777777777777665 566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
|...|++++|+..|+++++.+|. ++.++..++.++...|++++|+..|+.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777777777776654 666777777777777777777776654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.2e-15 Score=159.44 Aligned_cols=197 Identities=13% Similarity=0.038 Sum_probs=163.6
Q ss_pred CCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHH
Q 000951 803 MVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYIT 881 (1211)
Q Consensus 803 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~ 881 (1211)
+++...+..++.++.+.|++++|+..|+++++.. +.+...|..++..+.+.|++++|+..|+++++ ..|+. ..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 4567788899999999999999999999999754 34588899999999999999999999999999 78864 88999
Q ss_pred HHHHHHhc-----------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 882 LINGMCRV-----------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 882 l~~~~~~~-----------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
++.++... |++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++.+ .++.+|.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999999873 6678889999999999999999999999999988 4899999
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
.++.+|...|++++|+..|+..... .|+.. .+..++.++...|++++|.+.+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999987766 78554 8899999999999999999988765
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.6e-15 Score=177.70 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhcC---cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh----cchhhHHHHHHHHHHcCCCCChhHHH
Q 000951 808 TFNVLMRKCCEAG---EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI----AAFQESHFVLRGMAEKGLTPKCTQYI 880 (1211)
Q Consensus 808 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~eA~~~~~~~~~~g~~p~~~~~~ 880 (1211)
.+..|+.+|...| ++++|++.|++..+.+ .++...+..++..|... +++++|+.+|+++. .-+..++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 4555555555555 5555555555555543 23333334455555433 45555555555543 11234455
Q ss_pred HHHHH-H--HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCcccCHHHHHHH
Q 000951 881 TLING-M--CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-----KVEEAMLVLNRMLRMRLVPTIATFTTL 952 (1211)
Q Consensus 881 ~l~~~-~--~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~eA~~~~~~~~~~~~~p~~~~~~~L 952 (1211)
.|+.+ + ...+++++|++.|+++.+.| +..++..++.+|. .| ++++|+..|+++. .+ ++.++..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 55554 2 34555555555555555443 3445555555554 33 5555665555555 11 45555555
Q ss_pred HHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----CCChhHHHHHHHHHHHcC
Q 000951 953 IHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCA----NGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus 953 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 1011 (1211)
+.+|.. ..++++|...|+...+.| +..+.+.|+..|.. ..+.++|..++++..+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 555544 225555555555443322 23344555555442 235555555555554433
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.6e-15 Score=159.48 Aligned_cols=224 Identities=11% Similarity=0.034 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC--CC----hhhH
Q 000951 771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV--PD----TNTQ 844 (1211)
Q Consensus 771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 844 (1211)
...+..++..+...|++++|+.+++++++.. .+..++..++.+|...|++++|++.|+++.+.... ++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778899999999999999999999976 77889999999999999999999999999763311 12 5789
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC 924 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1211)
..++..|...|++++|+..|+++++ +.|+. ..+...|++++|...++++.... +.+..++..++.++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 66764 34566788999999999998763 55677889999999999
Q ss_pred CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHH
Q 000951 925 GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFEL 1003 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 1003 (1211)
|++++|+..|+++++..+. +..+|..++.++...|++++|+..++..... .|+ ...+..++.+|...|++++|.+.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999998766 8899999999999999999999999887766 675 45889999999999999999999
Q ss_pred HHHHHH
Q 000951 1004 YEEMKH 1009 (1211)
Q Consensus 1004 ~~~~~~ 1009 (1211)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=8.6e-15 Score=159.58 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE 869 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 869 (1211)
+..++.+|...|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3334444444444444444444443321 11233344444444444444444444444433
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1e-14 Score=170.92 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951 773 TCHSLILGFCETG---MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA----GEMGKAFDLFNIMNMLGVVPDTNTQD 845 (1211)
Q Consensus 773 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~ 845 (1211)
++..+...|...| ++++|++.|+++.+.| +++...+..|+.+|... +++++|+++|+++. +.++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 4445555555555 5566666666665543 22333334555555433 45666666666654 23455555
Q ss_pred HHHHH-H--HhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----ChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 846 AIIMG-L--KRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-----NFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 846 ~l~~~-~--~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.|+.. | ...+++++|+.+|+++.+.| +..++..|+.+|. .| ++++|++.|+++. +.+..++..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence 55555 3 34556666666666666533 3455556666555 33 6666666666665 3345566666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhc
Q 000951 918 VRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELS 975 (1211)
Q Consensus 918 ~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~ 975 (1211)
+.+|.. ..++++|...|+++.+.+ ++.++..|+.+|.. ..++++|...|+...+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 666654 236677777777766654 34455666666653 34667777766655544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.8e-13 Score=149.01 Aligned_cols=222 Identities=10% Similarity=-0.037 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCE----TGMLEVGFKFLKKMIAEGTMVDCFTFN 810 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 810 (1211)
++.++..++..|...|++++|+..|+++.+. .+..++..+...|.. .+++++|+..++++.+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445555555555555555555555555551 133344445555555 555555555555555532 344555
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hcchhhHHHHHHHHHHcCCCCChhHHHHH
Q 000951 811 VLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR----IAAFQESHFVLRGMAEKGLTPKCTQYITL 882 (1211)
Q Consensus 811 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~~~~~~~l 882 (1211)
.++.+|.. .+++++|++.|+++.+.+ +...+..++..|.. .+++++|+.+|+++++.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555432 44455555555555 555555555555555422 23344445
Q ss_pred HHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHH
Q 000951 883 INGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIH 954 (1211)
Q Consensus 883 ~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~ 954 (1211)
+.++.. .+++++|+..|+++.+.+ +..++..++.+|.. .+++++|++.|+++++.+ +..++..|+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555544 455555555555554432 23444445555555 555555555555555443 2334445555
Q ss_pred Hhhh----hCCHHHHHHHHHHHHh
Q 000951 955 KFCK----EAKFVDALKLKGTMEL 974 (1211)
Q Consensus 955 ~~~~----~g~~~~A~~~~~~~~~ 974 (1211)
+|.. .|++++|+..|+...+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 5554 4555555555444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.3e-14 Score=156.18 Aligned_cols=243 Identities=8% Similarity=-0.073 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHH
Q 000951 773 TCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMG 850 (1211)
Q Consensus 773 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 850 (1211)
.+...+..+...|++++|+..++++++.. +.+...+..++.+|...|++++|++.|+++.+....++ ...|..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456778888999999999999998853 23455888899999999999999999999987332222 2348999999
Q ss_pred HHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 000951 851 LKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEE 929 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 929 (1211)
|...|++++|+..|+++++ ..|+ ..++..++.++...|++++|+..|+++++. .+.+..++..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7775 488999999999999999999999999876 46677888889844445569999
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcC-CCCch------HHHHHHHHHHHhCCChhH
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK---FVDALKLKGTMELSG-VKLDV------VSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~ 999 (1211)
|++.|+++++..|. +...+..++.++...|+ +++|+..++...... ..|+. ..|..++..|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999998766 78899999999999998 888999887665442 12442 467889999999999999
Q ss_pred HHHHHHHHHHcCCccCh-hhHHHH
Q 000951 1000 AFELYEEMKHKGLCPNS-TTYSVL 1022 (1211)
Q Consensus 1000 a~~~~~~~~~~g~~p~~-~~~~~l 1022 (1211)
|.+.+++..+ +.|+. ..+..+
T Consensus 240 A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHh--cCccHHHHHHHh
Confidence 9999999977 45665 444444
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.9e-13 Score=147.41 Aligned_cols=224 Identities=9% Similarity=-0.059 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCcHHHHHHHHHHHHHCCCCCChhhHH
Q 000951 770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCE----AGEMGKAFDLFNIMNMLGVVPDTNTQD 845 (1211)
Q Consensus 770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 845 (1211)
+..++..+...|...|++++|++.|+++.+. .+...+..++.+|.. .+++++|++.|+++.+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5567778889999999999999999999983 356788889999999 999999999999999864 788999
Q ss_pred HHHHHHHh----hcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 846 AIIMGLKR----IAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 846 ~l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.++..|.. .+++++|+.+|+++++.+ +..++..++.+|.. .+++++|++.|+++.+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999853 66889999999999 999999999999999875 56788889
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951 918 VRGLAH----CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELSGVKLDVVSYNVLIS 989 (1211)
Q Consensus 918 ~~~~~~----~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 989 (1211)
+.+|.. .+++++|+..|+++++.+ ++.++..++.+|.. .|++++|+..|+...+. .| ...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--EN-GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--CC-HHHHHHHHH
Confidence 999998 999999999999999975 67889999999999 99999999999877765 33 568889999
Q ss_pred HHHh----CCChhHHHHHHHHHHHcC
Q 000951 990 GLCA----NGDVMPAFELYEEMKHKG 1011 (1211)
Q Consensus 990 ~~~~----~g~~~~a~~~~~~~~~~g 1011 (1211)
+|.. .+++++|.+.+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 999999999999987743
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.7e-14 Score=165.96 Aligned_cols=296 Identities=11% Similarity=-0.020 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-----KLTCHSLILGFCETGMLEVGFKFLKKMIAE----GTMVD- 805 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~- 805 (1211)
...+..++..+...|++++|+..|+++++. .|+ ...+..++..|...|++++|+..+++++.. +..|.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 334444445555555555555555555542 221 123444445555555555555555554432 10111
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhhcc--------------------hhhH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIMGLKRIAA--------------------FQES 860 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~eA 860 (1211)
..++..++.+|...|++++|++.++++.+.... ++ ..++..++..|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334455555555566666666555555431100 11 3355666666666666 6666
Q ss_pred HHHHHHHHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCc----hHHHHHHHHHHHhcCCHHHH
Q 000951 861 HFVLRGMAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGI-SSS----DVAESAMVRGLAHCGKVEEA 930 (1211)
Q Consensus 861 ~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~eA 930 (1211)
+..++++++. +..|. ..++..++.++...|++++|...++++++... .++ ..++..++.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666665541 11121 24667777777777777777777777753210 111 22566777778888888888
Q ss_pred HHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHH
Q 000951 931 MLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPA 1000 (1211)
Q Consensus 931 ~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a 1000 (1211)
+..++++++..+.. ...++..++.+|...|++++|+..++..... +..+. ...+..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887777643221 1556777888888888888888877654432 11111 23567777788888888888
Q ss_pred HHHHHHHHH----cCCccCh-hhHHHHHHHHHhcccch
Q 000951 1001 FELYEEMKH----KGLCPNS-TTYSVLIDAISKKENNL 1033 (1211)
Q Consensus 1001 ~~~~~~~~~----~g~~p~~-~~~~~l~~~~~~~~~~~ 1033 (1211)
.+.+++..+ .+..+.. .++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 888777554 2222322 45555555555555443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.1e-14 Score=153.63 Aligned_cols=246 Identities=9% Similarity=-0.139 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHH
Q 000951 749 KKDLLMCSMLLNTMKMEGL--LP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKA 825 (1211)
Q Consensus 749 ~g~~~~A~~~~~~~~~~g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 825 (1211)
.|++++|+..|+++++... .| +..++..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3455555555555554311 11 22344445555555555555555555555532 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
++.|+++++.. +.+...|..++..|...|++++|+..|+++++ ..|+..........+...|++++|...++++...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 55555555432 12345555555555555555555555555555 4444332333333334455666666666555543
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
. +++...+ .++..+...++.++|++.++++++..+.. +..+|..++.+|...|++++|...|+..... .|+..
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 249 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF 249 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH
Confidence 2 2222222 24444555555566666666555543221 1455566666666666666666665544433 44322
Q ss_pred HHHHHHHHHHhCCChhHHHHHH
Q 000951 983 SYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 983 ~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
...+.++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 11133444445555554443
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=4.6e-14 Score=163.99 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=186.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC-HHH
Q 000951 704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCP-S----LATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLPD-KLT 773 (1211)
Q Consensus 704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~ 773 (1211)
+......+...|++++|...|+++.+. .| + ...|..++..|...|++++|+..++++++. +..|. ..+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 333444444455555555555554432 12 2 234455555555555555555555554331 11111 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCc--------------------HHHHHHH
Q 000951 774 CHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVLMRKCCEAGE--------------------MGKAFDL 828 (1211)
Q Consensus 774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 828 (1211)
+..++..|...|++++|+..++++++.... ++ ..++..++.+|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 455556666666666666666666553100 11 3356667777777777 7777777
Q ss_pred HHHHHHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcC-CCCC----hhHHHHHHHHHHhcCChhhHHHH
Q 000951 829 FNIMNML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKG-LTPK----CTQYITLINGMCRVGNFQGAFKL 898 (1211)
Q Consensus 829 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~~~eA~~~ 898 (1211)
|+++.+. +..+ ...++..++..|...|++++|+..|+++++.. ..++ ..++..++.++...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7766431 1111 14467788888888899999998888888621 1122 14788899999999999999999
Q ss_pred HHHHHHcC----CCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 899 KDEMEALG----ISS-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 899 ~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
++++++.. .++ ...++..++.++...|++++|+..|+++++..... ...++..++.+|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99987431 111 14467888999999999999999999998753221 266889999999999999999998
Q ss_pred HHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhH
Q 000951 969 KGTMELS----GVKLD-VVSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 969 ~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 999 (1211)
++..... +..+. ..++..++.+|...|+...
T Consensus 330 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 330 AEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 8765433 22222 2366788888888886644
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=5.1e-14 Score=153.63 Aligned_cols=246 Identities=7% Similarity=-0.098 Sum_probs=182.3
Q ss_pred hcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChH
Q 000951 713 RMGNMMMANDLLSTMRSRKL--CP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLE 788 (1211)
Q Consensus 713 ~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 788 (1211)
..|++++|...|+++.+... +| +..+|..++..|...|++++|+..|+++++. .| +..++..++.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 35677888888888775421 12 4677888888888888888888888888874 44 5667778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951 789 VGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 789 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
+|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+. .|+..........+...|++++|+..+++++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888852 234678888888888999999999999888874 3444444444455567789999999998888
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951 869 EKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGIS---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT 945 (1211)
Q Consensus 869 ~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~ 945 (1211)
. ..|+......++..+...++.++|+..++++.+.... .+...+..++.++...|++++|...|+++++.+|. +
T Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 248 (275)
T 1xnf_A 172 E--KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N 248 (275)
T ss_dssp H--HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T
T ss_pred h--cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h
Confidence 7 4454433445777788888889999999988643211 12567889999999999999999999999998754 3
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHH
Q 000951 946 IATFTTLIHKFCKEAKFVDALKLK 969 (1211)
Q Consensus 946 ~~~~~~L~~~~~~~g~~~~A~~~~ 969 (1211)
+...+.++...|++++|++.+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 334466788899999998875
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=4.4e-14 Score=164.55 Aligned_cols=269 Identities=12% Similarity=0.022 Sum_probs=178.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHhh
Q 000951 739 YNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-K----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GT-MVDCFT 808 (1211)
Q Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 808 (1211)
+..++..+...|++++|+..|+++++. .|+ . ..+..++..|...|++++|+..++++++. +. +....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 334455556666666666666666653 232 1 24555556666666666666666665542 00 112345
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhhcc-----------------hhhHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLG-----VVPDTNTQDAIIMGLKRIAA-----------------FQESHFVLRG 866 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~eA~~~~~~ 866 (1211)
+..++.+|...|++++|++.|+++.+.. ......++..++..|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5666666777777777777766664310 01124466777777777777 7777777777
Q ss_pred HHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 867 MAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMVRGLAHCGKVEEAMLVLNR 936 (1211)
Q Consensus 867 ~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~ 936 (1211)
+++. +..|. ..++..++.++...|++++|+..|+++++.... ++ ..++..++.+|...|++++|+..|++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6641 11122 257888888999999999999999988653110 11 22677889999999999999999999
Q ss_pred HHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC----CCCc-hHHHHHHHHHHHhCCChhHHHHHHHH
Q 000951 937 MLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELSG----VKLD-VVSYNVLISGLCANGDVMPAFELYEE 1006 (1211)
Q Consensus 937 ~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 1006 (1211)
+++..+.. ...++..++.+|...|++++|+..++...... ..+. ...+..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88754321 25788899999999999999999888655431 1111 23678889999999999999999998
Q ss_pred HHH
Q 000951 1007 MKH 1009 (1211)
Q Consensus 1007 ~~~ 1009 (1211)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=4.6e-13 Score=143.87 Aligned_cols=198 Identities=12% Similarity=-0.077 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951 774 CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853 (1211)
Q Consensus 774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (1211)
+..++..+...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++.+.. +.+...|..++..|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3334444444455555555555444431 1233444444455555555555555555544322 1234444445555555
Q ss_pred hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML 932 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 932 (1211)
.|++++|+..|+++++.+..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544223333 2445555555555555555555555555442 3344455555555555566666666
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 933 VLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 933 ~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.++++++..+. +...+..++.++...|++++|...++.+...
T Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66655554433 4555555555555566666666555555444
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=7.4e-14 Score=149.10 Aligned_cols=162 Identities=10% Similarity=0.027 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGM 886 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~ 886 (1211)
.+..++.+|...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..|+++++ ..|+ ...+..++.++
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 33333444444444444444444433321 11233344444444444444444444444443 2232 23344444444
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951 887 CRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL 966 (1211)
Q Consensus 887 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~ 966 (1211)
...|++++|...++++.+.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.+|...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHH
Confidence 44444444444444444331 233444444444555555555555555555444332 4444555555555555555555
Q ss_pred HHHHHHHh
Q 000951 967 KLKGTMEL 974 (1211)
Q Consensus 967 ~~~~~~~~ 974 (1211)
..++....
T Consensus 214 ~~~~~~~~ 221 (243)
T 2q7f_A 214 EMLDKAID 221 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55444433
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=8.8e-14 Score=148.51 Aligned_cols=216 Identities=11% Similarity=-0.022 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM 813 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 813 (1211)
....|..++..+...|++++|+..|+++++ ..| +...+..++..|...|++++|+..++++++.. +.+..++..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456677777778888888888888888877 334 55667777788888888888888888887752 33566777888
Q ss_pred HHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951 814 RKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF 892 (1211)
Q Consensus 814 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 892 (1211)
.+|...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++ ..|+ ...+..++.++...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887643 34577788888888888888888888888887 5564 57788888999999999
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK 958 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~ 958 (1211)
++|...|+++.+.. +.+..++..++.++...|++++|.+.|+++++..|. +..++..++.....
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHhh
Confidence 99999999988763 566778888999999999999999999999988765 77777666554443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=8.6e-13 Score=138.71 Aligned_cols=195 Identities=10% Similarity=-0.053 Sum_probs=83.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI- 854 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 854 (1211)
.++..+...|++++|++.++++++.. +.+...+..++.+|...|++++|++.|+++.+.. +.+...+..++..|...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 33334444444444444444443321 1123333444444444444444444444443321 11233344444444444
Q ss_pred cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 000951 855 AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 855 g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
|++++|+..|+++++.+..|+ ...+..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444443222232 2344444444445555555555555444431 23344444455555555555555555
Q ss_pred HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
++++++..+..+...+..++..+...|+.++|...++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555544331144444444444455555555555544443
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=9.6e-13 Score=141.35 Aligned_cols=207 Identities=10% Similarity=-0.022 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR 814 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 814 (1211)
...|..++..+...|++++|+..|+++++. .| +...+..++..|...|++++|++.++++++.. +.+..++..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 566777788888888888888888888774 34 55677777888888888888888888888753 235677888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNF 892 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 892 (1211)
+|...|++++|++.|+++.+.+..| +...+..++..|...|++++|+..|+++++ ..|+ ...+..++.++...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR--LNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCH
Confidence 8888889999998888887622334 366788888888899999999999999888 5665 57788899999999999
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF 949 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~ 949 (1211)
++|...++++.+. .+.+...+..++.++...|++++|.+.++++++..|. +...+
T Consensus 192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 9999999998875 3566777888889999999999999999999987654 54443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.5e-13 Score=154.78 Aligned_cols=267 Identities=11% Similarity=0.006 Sum_probs=161.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHH
Q 000951 741 ILLHGYSKKKDLLMCSMLLNTMKMEGLLPD-----KLTCHSLILGFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFN 810 (1211)
Q Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~ 810 (1211)
..+..+...|++++|+..|+++++. .|+ ...+..++..|...|++++|++.+++++.. +..+ ...++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3344455555555555555555542 221 123444455555555555555555554432 1011 133455
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhcc--------------------hhhHHHHHH
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMNMLGV-VPD----TNTQDAIIMGLKRIAA--------------------FQESHFVLR 865 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~eA~~~~~ 865 (1211)
.++.+|...|++++|++.++++.+... .++ ..++..++..|...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 555666666666666666665543110 011 2356666666666676 677777776
Q ss_pred HHHHc----CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC-C--chHHHHHHHHHHHhcCCHHHHHHHHH
Q 000951 866 GMAEK----GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG--IS-S--SDVAESAMVRGLAHCGKVEEAMLVLN 935 (1211)
Q Consensus 866 ~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~-~--~~~~~~~l~~~~~~~g~~~eA~~~~~ 935 (1211)
++++. +..|. ..++..++..+...|++++|...++++.+.. .. + ...++..++.++...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66541 11121 2567778888888888888888888876431 01 1 12267778888888888888888888
Q ss_pred HHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHHHHHHH
Q 000951 936 RMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus 936 ~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
++++..+.. ...++..++.++...|++++|...++..... +..+. ..++..++.+|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 887643221 1567788888899999999998887765433 11111 2266788888889999999999988
Q ss_pred HHHH
Q 000951 1006 EMKH 1009 (1211)
Q Consensus 1006 ~~~~ 1009 (1211)
+..+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=4e-13 Score=136.35 Aligned_cols=164 Identities=12% Similarity=0.028 Sum_probs=88.2
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLIN 884 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~ 884 (1211)
..+|..++.+|...|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|+..+.++.. ..|+ ...+..++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 3455555555555555555555555555432 12344555555555555555555555555554 3443 244555555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD 964 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~ 964 (1211)
.+...+++++|...++++.+. .+.+..++..++.++.+.|++++|++.|+++++.+|. ++.+|..+|.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555544 2344455555555555555555555555555555443 55555555555555555555
Q ss_pred HHHHHHHHHh
Q 000951 965 ALKLKGTMEL 974 (1211)
Q Consensus 965 A~~~~~~~~~ 974 (1211)
|+..|+...+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.8e-13 Score=159.46 Aligned_cols=262 Identities=12% Similarity=0.022 Sum_probs=159.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 000951 710 GFSRMGNMMMANDLLSTMRSRKLCP-SL----ATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSLIL 779 (1211)
Q Consensus 710 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~ 779 (1211)
.+...|++++|...|+++.+. .| +. ..|..++..|...|++++|+..|+++++. +..| ...++..+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 344444444444444444432 12 11 23444445555555555555555544431 1112 1234445555
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCc-----------------HHHHHHHHHHHHHC--
Q 000951 780 GFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFNVLMRKCCEAGE-----------------MGKAFDLFNIMNML-- 835 (1211)
Q Consensus 780 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~-- 835 (1211)
.|...|++++|+..++++++. +-.+ ...++..++.+|...|+ +++|++.|+++.+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655543 0011 13355566666666666 66666666665431
Q ss_pred --CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 836 --GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-------CTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 836 --~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
+..+ ....+..++..|...|++++|+..|+++++ +.|+ ..++..++.++...|++++|...|+++++.
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1011 134677777788888888888888888776 2221 136788888888889999999988888643
Q ss_pred CC--C---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 906 GI--S---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 906 ~~--~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.. . ....++..++.++...|++++|+..++++++..... ...++..++.+|...|++++|...++.....
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1 114567788889999999999999999888753211 2457888999999999999999988876654
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.9e-12 Score=136.14 Aligned_cols=209 Identities=9% Similarity=-0.058 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLM 813 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 813 (1211)
+...|..++..+...|++++|+..|+++++. .| +...+..++..|...|++++|++.++++++.. +.+..++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 5667777888888888888888888888773 34 45677777788888888888888888888753 33566778888
Q ss_pred HHHHhc-CcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951 814 RKCCEA-GEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG 890 (1211)
Q Consensus 814 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 890 (1211)
.+|... |++++|++.|+++.+.+..|+ ...|..++..|...|++++|+..|+++++ ..|+ ...+..++.++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHcC
Confidence 888888 888888888888886222233 56788888888889999999999998888 5665 577888899999999
Q ss_pred ChhhHHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 891 NFQGAFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 891 ~~~eA~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
++++|...++++.+.. + .+...+..++..+...|+.++|..+++.+.+..|. ++....
T Consensus 162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 9999999999988763 4 56777777788888999999999999988876644 554443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.3e-13 Score=162.69 Aligned_cols=213 Identities=7% Similarity=-0.061 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHH
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEM-GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLR 865 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 865 (1211)
+++++..+++.... .+.+...+..++.+|...|++ ++|++.|+++++.. +.+...|..++.+|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555554442 223456666666777777777 77777777766543 2236667777777777777777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhc---------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc--------CCHH
Q 000951 866 GMAEKGLTPKCTQYITLINGMCRV---------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC--------GKVE 928 (1211)
Q Consensus 866 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 928 (1211)
++++ +.|+..++..++.++... |++++|+..|+++++.. +.+..+|..++.+|... |+++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 7776 566666677777777777 77777777777777663 55666777777777777 7788
Q ss_pred HHHHHHHHHHhCCc---ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHH
Q 000951 929 EAMLVLNRMLRMRL---VPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 929 eA~~~~~~~~~~~~---~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
+|++.|+++++.+| . ++.+|..++.+|...|++++|+..|+..... .|+.. .+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~p~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888765 3 7778888888888888888888887766655 67544 6777777888888888777665
Q ss_pred HHH
Q 000951 1005 EEM 1007 (1211)
Q Consensus 1005 ~~~ 1007 (1211)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 433
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.1e-12 Score=150.97 Aligned_cols=230 Identities=8% Similarity=-0.029 Sum_probs=170.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-C-----ChhhHH
Q 000951 777 LILGFCETGMLEVGFKFLKKMIAE----GTMV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-P-----DTNTQD 845 (1211)
Q Consensus 777 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 845 (1211)
.+..+...|++++|+..++++++. +-++ ...++..++.+|...|++++|++.++++.+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677788888888888888764 1111 2456777888888888888888888877642111 1 135678
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CCchHHHH
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGL-TPK----CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GI-SSSDVAES 915 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~-~~~~~~~~ 915 (1211)
.++..|...|++++|+..|+++++... .++ ..++..++.+|...|++++|+..|+++++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988886211 111 157888999999999999999999999762 33 44466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcc---c-CHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCchH-HHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV---P-TIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLDVV-SYNVL 987 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p-~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~-~~~~l 987 (1211)
.++.++...|++++|...++++++.... | ....+..++.++...|+ +++|+..++.. +..|+.. .+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999999875321 1 22346778999999999 77777776543 3344433 67888
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 000951 988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+..|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=7.9e-13 Score=134.09 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=150.8
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.++..|..++..|.+.|++++|+..|+++++ ++|+ ..++..++.++...|++++|+..++++.... +.+..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 3577899999999999999999999999999 8896 4889999999999999999999999998763 6677888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCC
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGD 996 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 996 (1211)
+..+...+++++|...++++++..|. +..++..++.+|...|++++|+..|+..... .|+. .+|..++.+|...|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCC
Confidence 99999999999999999999998866 8899999999999999999999999987766 7854 489999999999999
Q ss_pred hhHHHHHHHHHHH
Q 000951 997 VMPAFELYEEMKH 1009 (1211)
Q Consensus 997 ~~~a~~~~~~~~~ 1009 (1211)
+++|++.+++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=4.3e-13 Score=151.04 Aligned_cols=266 Identities=11% Similarity=0.005 Sum_probs=169.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 000951 708 MDGFSRMGNMMMANDLLSTMRSRKLCP-S----LATYNILLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSL 777 (1211)
Q Consensus 708 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l 777 (1211)
...+...|++++|...|+++.+. .| + ...+..++..|...|++++|+..++++++. +..| ...++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34444555555555555555443 22 2 234555555556666666666665554431 1111 12345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCc--------------------HHHHHHHHHHH
Q 000951 778 ILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVLMRKCCEAGE--------------------MGKAFDLFNIM 832 (1211)
Q Consensus 778 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 832 (1211)
...|...|++++|+..++++++.... ++ ..++..++.+|...|+ +++|++.++++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 66666667777777766666543100 11 2356666677777777 77777777665
Q ss_pred HHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCChhhHHHHHHHH
Q 000951 833 NML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TPK----CTQYITLINGMCRVGNFQGAFKLKDEM 902 (1211)
Q Consensus 833 ~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~ 902 (1211)
.+. +..+ ....+..++..|...|++++|+..++++++... .++ ..++..++.++...|++++|...++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 1011 134677788888888888888888888875210 111 147888889999999999999999988
Q ss_pred HHcCC-CCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 903 EALGI-SSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 903 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
++... .++ ..++..++.++...|++++|...++++++..+.. ...++..++.+|...|++++|...++..
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 64311 111 4467788899999999999999999988753221 2457888999999999999999998876
Q ss_pred Hhc
Q 000951 973 ELS 975 (1211)
Q Consensus 973 ~~~ 975 (1211)
...
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=7.3e-13 Score=156.14 Aligned_cols=210 Identities=10% Similarity=-0.047 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 752 LLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETGML-EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 752 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
+++++..+.+... ..| +...+..++.+|...|++ ++|++.|+++++.. +.+..++..++.+|...|++++|++.|
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555556665554 233 555666677777777888 88888888877742 224667788888888888888888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhh---------cchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc--------CC
Q 000951 830 NIMNMLGVVPDTNTQDAIIMGLKRI---------AAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV--------GN 891 (1211)
Q Consensus 830 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~ 891 (1211)
+++++. .|+...+..++.+|... |++++|+..|+++++ +.|+ ...+..++.+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 888764 35667788888888888 899999999999988 7785 47888899999888 99
Q ss_pred hhhHHHHHHHHHHcCCC---CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH
Q 000951 892 FQGAFKLKDEMEALGIS---SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
+++|+..|+++++.. + .+..+|..++.+|...|++++|++.|+++++.+|. +..+|..++.++...|++++|+..
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998763 4 57888999999999999999999999999998876 888999999999999999999886
Q ss_pred HH
Q 000951 969 KG 970 (1211)
Q Consensus 969 ~~ 970 (1211)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.3e-11 Score=136.66 Aligned_cols=219 Identities=10% Similarity=0.025 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 000951 753 LMCSMLLNTMKMEGLLP-DKLTCHSLILGFC-------ETGML-------EVGFKFLKKMIAEGTMVDCFTFNVLMRKCC 817 (1211)
Q Consensus 753 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 817 (1211)
++|+..|+++++ ..| +...|..++..+. ..|++ ++|+.+|+++++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 566677777766 334 4455665555554 34665 778888888876312224557777777888
Q ss_pred hcCcHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHH-hcCChh
Q 000951 818 EAGEMGKAFDLFNIMNMLGVVPD-TN-TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMC-RVGNFQ 893 (1211)
Q Consensus 818 ~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~-~~g~~~ 893 (1211)
+.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++ ..|+. ..|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 888888888888888763 343 33 677778777788888888888888877 44543 44444433322 257888
Q ss_pred hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-ccc--CHHHHHHHHHHhhhhCCHHHHHHHHH
Q 000951 894 GAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR-LVP--TIATFTTLIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 894 eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~ 970 (1211)
+|.+.|+++++. .+.+..+|..++..+.+.|++++|..+|+++++.. .+| ....|..++..+...|++++|..+++
T Consensus 187 ~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888765 35566777777778888888888888888888752 122 45677777777777888888887777
Q ss_pred HHHhcCCCCc
Q 000951 971 TMELSGVKLD 980 (1211)
Q Consensus 971 ~~~~~~~~p~ 980 (1211)
...+. .|+
T Consensus 266 ~a~~~--~p~ 273 (308)
T 2ond_A 266 RRFTA--FRE 273 (308)
T ss_dssp HHHHH--TTT
T ss_pred HHHHH--ccc
Confidence 66554 554
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=6e-10 Score=134.26 Aligned_cols=454 Identities=10% Similarity=-0.036 Sum_probs=297.4
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 000951 506 VCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGN---LKEAKRF 582 (1211)
Q Consensus 506 ~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~ 582 (1211)
..+.+..|+..+... +-|..+|..++..+.+.+.++.+..+|++++.. .+.....|...+..-.+.++ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666666554 358889999999999999999999999999875 45567778888888888888 9999999
Q ss_pred HHHhhhCCC-CccHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHH---------
Q 000951 583 LNSLHHIPS-AVDTVAYNTILAETCKSGNL--------WEAIVLLDEMVQ-FNL-LPD-RYTYTILLAGLC--------- 641 (1211)
Q Consensus 583 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~--------- 641 (1211)
|++.+...+ .+++..|...+....+.++. +...++|+..+. .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999988662 35777888877766665543 334477777665 354 443 467777776543
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 000951 642 RKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMM 719 (1211)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 719 (1211)
.+++++.+..+|++++. ++.. ..+|......-...+. ..+..++.+ ...+++.
T Consensus 206 eq~~~~~~R~iy~raL~---iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC---QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTT---SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHH
Confidence 23456778888888875 2222 2233222211101000 001111111 0112333
Q ss_pred HHHHHHHHHH--CCC----C-----------C--C------HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHCCC
Q 000951 720 ANDLLSTMRS--RKL----C-----------P--S------LATYNILLHGYSKKK-------DLLMCSMLLNTMKMEGL 767 (1211)
Q Consensus 720 A~~~~~~~~~--~~~----~-----------p--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~g~ 767 (1211)
|...+.++.. .++ + | + ...|...+.--...+ ..+.+..+|++++.. .
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 3443333211 011 0 1 0 234555544332222 123456778888874 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCC---------C
Q 000951 768 LPDKLTCHSLILGFCETGMLEVGF-KFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLG---------V 837 (1211)
Q Consensus 768 ~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~ 837 (1211)
.-....|...+.-+...|+.++|. ++|++++.. .+.+...+..++....+.|++++|.++|+++++.. .
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 226677777777777888888996 999999875 34456677788888889999999999999887521 0
Q ss_pred CC------------ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 000951 838 VP------------DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG-NFQGAFKLKDEMEA 904 (1211)
Q Consensus 838 ~~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~ 904 (1211)
.| ....|...+....+.|..+.|..+|.++++.-..+....|...+..-.+.+ +++.|.++|+.+++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 12 123677777777888999999999999987311112355655555544554 58999999999987
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 905 LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 905 ~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
. .+.+...|...++.....|+.+.|..+|++++...+.+ ....|...+..-.+.|+.+.+..+.+.+.+. .|+..
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~ 575 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVN 575 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCc
Confidence 6 56677778888888888899999999999999876532 3467888888888899999999998888776 67665
Q ss_pred HHHHHHHHH
Q 000951 983 SYNVLISGL 991 (1211)
Q Consensus 983 ~~~~l~~~~ 991 (1211)
....+..-|
T Consensus 576 ~~~~f~~ry 584 (679)
T 4e6h_A 576 KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555544
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=9.9e-13 Score=160.65 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
..+|+.|+.+|.+.|++++|+..|+++++ ++|+. .++..++.+|.+.|++++|++.|+++++.. +.+..+|..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555555555555555555555555555 55542 555555666666666666666666655542 344555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChh
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVM 998 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 998 (1211)
+|...|++++|++.|+++++.+|. +..+|..||.+|...|++++|+..|+...+. .|+.. .+..++.+|...|+|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 666666666666666666655544 5556666666666666666666665544444 55433 5555666666666666
Q ss_pred HHHHHHHHHH
Q 000951 999 PAFELYEEMK 1008 (1211)
Q Consensus 999 ~a~~~~~~~~ 1008 (1211)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=2.1e-12 Score=148.43 Aligned_cols=230 Identities=7% Similarity=-0.020 Sum_probs=135.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CC---C-CHhhHH
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKME----GLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEG--TM---V-DCFTFN 810 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~-~~~~~~ 810 (1211)
.+..+...|++++|+..|+++++. +-.+ ...++..++..|...|++++|+..++++++.. .. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455555555555555555442 0011 11344555555666666666666666555430 00 0 123555
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhhcchhhHHHHHHHHHHc----CCCCC-hhHHH
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIMGLKRIAAFQESHFVLRGMAEK----GLTPK-CTQYI 880 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----g~~p~-~~~~~ 880 (1211)
.++.+|...|++++|++.|+++++.... ++ ..++..++.+|...|++++|+..|+++++. +..|. ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666666666666666666666431100 11 235666777777777777777777776651 22243 36677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc----CCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCccc-CHHHHHHH
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEAL----GISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVP-TIATFTTL 952 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p-~~~~~~~L 952 (1211)
.++.++...|++++|...++++++. +.+.....+..++.++...|+ +++|+.++++. +..| ...++..|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7777888888888888888777543 112222335667778888887 77777777765 2222 44577788
Q ss_pred HHHhhhhCCHHHHHHHHHHHHh
Q 000951 953 IHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
+.+|...|++++|...|+....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888776543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.2e-13 Score=147.93 Aligned_cols=236 Identities=14% Similarity=0.080 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKME-----G-LLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAE------GT 802 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 802 (1211)
..++..++..|...|++++|+..|+++++. + ..| ...++..++..|...|++++|+..+++++.. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455556666666666666666666665542 0 012 2234555566666666666666666666553 11
Q ss_pred CC-CHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc----
Q 000951 803 MV-DCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK---- 870 (1211)
Q Consensus 803 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---- 870 (1211)
.| ...++..++.+|...|++++|++.|+++.+. +..| ....+..++..|...|++++|+..|+++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 11 2345556666666666666666666665532 1111 1344555666666666666666666666552
Q ss_pred --CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC-------CCC-c------hHHHHHHHHHHHhcCCHHHHHHH
Q 000951 871 --GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALG-------ISS-S------DVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 871 --g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~-------~~~-~------~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
+..|. ..++..++.++...|++++|.+.|+++++.. ..+ . ...+..++..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11232 2455566666666666666666666665320 000 0 01111222233333444444455
Q ss_pred HHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 934 LNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 934 ~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
++++....+. +..+|..++.+|...|++++|+..|+..
T Consensus 267 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 267 YKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5554443322 4455555555555555555555555443
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=1.6e-09 Score=130.52 Aligned_cols=220 Identities=9% Similarity=-0.066 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHH
Q 000951 788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAF-DLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRG 866 (1211)
Q Consensus 788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 866 (1211)
+....+|++++.. .+.....|...+..+...|+.++|. ++|+++... ++.+...|...+....+.|++++|..+|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456788888886 4446778888888888899999997 999999863 344566788888889999999999999999
Q ss_pred HHHcC---------CCCC------------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 867 MAEKG---------LTPK------------CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 867 ~~~~g---------~~p~------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
+++.. -.|. ...|...+....+.|..+.|..+|+++.+........+|...+.+-.+.|
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 98731 0142 23677778888888999999999999986511223445555555555555
Q ss_pred -CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCC-ch-HHHHHHHHHHHhCCChhHHHH
Q 000951 926 -KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKL-DV-VSYNVLISGLCANGDVMPAFE 1002 (1211)
Q Consensus 926 -~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~a~~ 1002 (1211)
+.+.|.++|+.+++.-+. ++..|...+......|+.+.|..+|+.......+| +. ..|...+..-...|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 489999999999997544 77888888888889999999999999766552222 23 256666777778899999999
Q ss_pred HHHHHHHc
Q 000951 1003 LYEEMKHK 1010 (1211)
Q Consensus 1003 ~~~~~~~~ 1010 (1211)
+.+++.+.
T Consensus 563 v~~R~~~~ 570 (679)
T 4e6h_A 563 LEKRFFEK 570 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999774
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=3.9e-11 Score=132.91 Aligned_cols=217 Identities=8% Similarity=-0.054 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCcH-------HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951 788 EVGFKFLKKMIAEGTMVDCFTFNVLMRKCC-------EAGEM-------GKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853 (1211)
Q Consensus 788 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (1211)
++|+..|++++.. .+.++..|..++..+. +.|++ ++|+.+|+++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6888999999885 2345778888887765 35876 8999999999873113346789999999999
Q ss_pred hcchhhHHHHHHHHHHcCCCCCh-h-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH-hcCCHHHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTPKC-T-QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA-HCGKVEEA 930 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~~-~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~eA 930 (1211)
.|++++|...|+++++ +.|+. . .|..++..+.+.|++++|...|+++++.. +++..+|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 77864 4 79999999999999999999999998763 445556655554433 37999999
Q ss_pred HHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcC-CCCc--hHHHHHHHHHHHhCCChhHHHHHHHHH
Q 000951 931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSG-VKLD--VVSYNVLISGLCANGDVMPAFELYEEM 1007 (1211)
Q Consensus 931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 1007 (1211)
..+|+++++..|. ++..|..++..+.+.|++++|..+|+...... +.|+ ...|..++..+...|++++|..+++.+
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999997765 88999999999999999999999998877752 4553 347778888888899999999999888
Q ss_pred HH
Q 000951 1008 KH 1009 (1211)
Q Consensus 1008 ~~ 1009 (1211)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=2.7e-12 Score=156.78 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=135.4
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN 884 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~ 884 (1211)
..+++.|+.+|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+++++ ++|+. .+|..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5677888888888888888888888887643 23477788888888888888888888888888 77864 78888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHH
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVD 964 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~ 964 (1211)
++...|++++|++.|+++++.. +.+..+++.++.+|...|++++|++.|+++++.+|. +..+|..|+.+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 8888899999999998888773 566778888899999999999999999999988766 78888999999999999999
Q ss_pred HHHHHHHHHhc
Q 000951 965 ALKLKGTMELS 975 (1211)
Q Consensus 965 A~~~~~~~~~~ 975 (1211)
|.+.++...+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887765543
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.6e-12 Score=144.47 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CC
Q 000951 771 KLTCHSLILGFCETGMLEVGFKFLKKMIAE-------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GV 837 (1211)
Q Consensus 771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 837 (1211)
..++..++..+...|++++|+.+++++++. ..+....++..++.+|...|++++|++.|+++.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778889999999999999999999873 22334667888999999999999999999988753 11
Q ss_pred CC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----
Q 000951 838 VP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL---- 905 (1211)
Q Consensus 838 ~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---- 905 (1211)
.| ....+..++..|...|++++|+..|+++++. +..|. ..++..++.++...|++++|+++|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3667889999999999999999999999873 22343 377889999999999999999999999754
Q ss_pred --CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc-------c-C------HHHHHHHHHHhhhhCCHHHHHHH
Q 000951 906 --GISS-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV-------P-T------IATFTTLIHKFCKEAKFVDALKL 968 (1211)
Q Consensus 906 --~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------p-~------~~~~~~L~~~~~~~g~~~~A~~~ 968 (1211)
+..| ...++..++.++...|++++|++.++++++..+. | . ...+..++..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 3446788999999999999999999999874211 1 1 22334444445556677777777
Q ss_pred HHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 969 KGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 969 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
++..... .|+. .++..++.+|...|++++|.+.+++..+
T Consensus 267 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6654433 5644 4788899999999999999999988765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.5e-11 Score=137.92 Aligned_cols=231 Identities=9% Similarity=-0.023 Sum_probs=171.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-C-----ChhhH
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGT-MVD----CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-P-----DTNTQ 844 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~ 844 (1211)
..+..+...|++++|+..++++++... .++ ..++..++.+|...|++++|++.++++.+.... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345667788888888888888876411 122 456777888888899999998888887642111 1 14567
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcC----CCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCchHHHH
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKG----LTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISSSDVAES 915 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~~ 915 (1211)
+.++..|...|++++|+..|+++++.. -.+. ..++..++.+|...|++++|+..|+++++. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 888889999999999999999888621 1111 267888999999999999999999999761 2344466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcc---c-CHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCchH-HHHHH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLV---P-TIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLDVV-SYNVL 987 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~---p-~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~-~~~~l 987 (1211)
.++.++.+.|++++|...++++++.... | ....+..++..+...|+ +++|+..++. .+..|+.. .+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 9999999999999999999999885322 1 23456777788888888 7788777664 23344433 66788
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 000951 988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+..|...|++++|.+.+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988755
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=7.4e-11 Score=135.14 Aligned_cols=233 Identities=10% Similarity=-0.036 Sum_probs=172.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C---CC-CHh
Q 000951 739 YNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPD----KLTCHSLILGFCETGMLEVGFKFLKKMIAEG--T---MV-DCF 807 (1211)
Q Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~ 807 (1211)
|...+..+...|++++|+..|+++.+... .++ ..++..++.+|...|++++|+..++++++.. . .+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 44456677788999999999998876311 122 2466778888999999999999999887641 1 11 145
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc---CCCCC-hhH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNML----GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK---GLTPK-CTQ 878 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~---g~~p~-~~~ 878 (1211)
+++.++.+|...|++++|++.|+++++. +..+ ...++..++.+|...|++++|+..|+++++. ...|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 6778888999999999999999888652 1111 1457888999999999999999999998861 12233 477
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCccc-CHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALG----ISSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVP-TIATFT 950 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p-~~~~~~ 950 (1211)
+..++.++.+.|++++|...++++++.. .+.....+..+...+...|+ +.+|+..+++. +..| ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 8899999999999999999999998642 22223456677778888888 88888887762 2222 446778
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
.++..|...|++++|...|+....
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999876543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=4.3e-11 Score=126.09 Aligned_cols=151 Identities=12% Similarity=0.001 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHH
Q 000951 807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLING 885 (1211)
Q Consensus 807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~ 885 (1211)
..+..++..|...|++++|++.|+++++....++...+..++.+|...|++++|+..|+++++ ..|+. .++..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 344444444444444444444444444432223344444444444455555555555555444 44432 444455555
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhh
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSD-------VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFC 957 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~ 957 (1211)
+...|++++|+..|+++++.. +.+. .++..++..+...|++++|++.|+++++.+|.. +..+|..++.+|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555555554431 2222 234555555555555666666665555543210 2345555555554
Q ss_pred hhC
Q 000951 958 KEA 960 (1211)
Q Consensus 958 ~~g 960 (1211)
..|
T Consensus 165 ~~~ 167 (228)
T 4i17_A 165 NNG 167 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=3.3e-11 Score=126.95 Aligned_cols=205 Identities=6% Similarity=-0.120 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMV-DCFTFNVLM 813 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 813 (1211)
|+..+..++..+...|++++|+..|+++++....++...+..++.++...|++++|++.++++++. .| +..++..++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 556677777777777777777777777776432245555555667777777777777777777763 23 345666667
Q ss_pred HHHHhcCcHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--h-hHHHHHH
Q 000951 814 RKCCEAGEMGKAFDLFNIMNMLGVVPDT-------NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK--C-TQYITLI 883 (1211)
Q Consensus 814 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~--~-~~~~~l~ 883 (1211)
.+|...|++++|++.|+++++.. +.+. ..|..++..+...|++++|+..|+++++ ..|+ . .++..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 77777777777777777766532 1223 3455566666666666666666666665 5555 3 4555555
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 884 NGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 884 ~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
.++...| ...++++...+ +.+...+... .....+.+++|+..|+++++..|. +..+...+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 5554333 23333333332 1122222211 122334455666666666655544 444444443
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=2e-10 Score=131.37 Aligned_cols=268 Identities=12% Similarity=-0.048 Sum_probs=167.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHHHH
Q 000951 742 LLHGYSKKKDLLMCSMLLNTMKMEGLLPDKL----TCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD----CFTFNVL 812 (1211)
Q Consensus 742 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 812 (1211)
+...+...|++++|...++++++.....+.. ++..+...+...|++++|...+++++..... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444555666666666666666532111221 3444556666677777777777766653110 11 1234556
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC--C-C-hhHHHH
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNML----GVV--P-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT--P-K-CTQYIT 881 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~--p-~-~~~~~~ 881 (1211)
+.++...|++++|++.++++.+. +.. | ....+..++..|...|++++|...+++.++.... | . ..++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777777777777777766531 111 2 1345566777777888888888888887762221 1 1 245777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCC-chHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCccc---CHHHHHHH
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISS-SDVAES-----AMVRGLAHCGKVEEAMLVLNRMLRMRLVP---TIATFTTL 952 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~g~~~eA~~~~~~~~~~~~~p---~~~~~~~L 952 (1211)
++.++...|++++|...++++.+....+ ....+. ..+..+...|++++|...++++++..+.+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 8888888888888888888886532111 111121 23445778899999999988887754332 13356788
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhc----CCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 953 IHKFCKEAKFVDALKLKGTMELS----GVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+.++...|++++|...++..... +..++.. .+..++.+|...|++++|...++...+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888899999998887765432 1111222 556777788888999999988887654
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=3.5e-11 Score=131.97 Aligned_cols=188 Identities=11% Similarity=-0.017 Sum_probs=118.1
Q ss_pred HHhcCcHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC---C----hhHHHHHH
Q 000951 816 CCEAGEMGKAFDLFNIMNML----GVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP---K----CTQYITLI 883 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p---~----~~~~~~l~ 883 (1211)
|...|++++|++.|+++.+. +-.++ ..+|+.++.+|...|++++|+..|+++++ +.| + ..++..++
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Confidence 44445555555555444321 10111 34555666666666666666666666654 222 1 24677888
Q ss_pred HHHHhc-CChhhHHHHHHHHHHcCCCC-c----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH------HHHHH
Q 000951 884 NGMCRV-GNFQGAFKLKDEMEALGISS-S----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI------ATFTT 951 (1211)
Q Consensus 884 ~~~~~~-g~~~eA~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~------~~~~~ 951 (1211)
.+|... |++++|+..|+++++..... + ..++..++.++.+.|++++|+..|+++++..+.... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 88888888888887542111 1 346778888999999999999999999987655322 15788
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH------HHHHHHHHHH--hCCChhHHHHHHHHH
Q 000951 952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV------SYNVLISGLC--ANGDVMPAFELYEEM 1007 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~ 1007 (1211)
++.++...|++++|+..|+... .+.|+.. .+..++.+|. ..+++++|++.++.+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al--~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQ--SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGG--CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888999999999999887554 3466533 1334555554 346788888887665
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=4.9e-11 Score=130.85 Aligned_cols=198 Identities=9% Similarity=-0.089 Sum_probs=128.0
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC----hhhHHHHHH
Q 000951 780 GFCETGMLEVGFKFLKKMIAE----GTMVD-CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD----TNTQDAIIM 849 (1211)
Q Consensus 780 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 849 (1211)
.|...|++++|+..|+++++. +-+++ ..+++.++.+|...|++++|++.|+++++.... .+ ..++..++.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666543 11111 345666667777777777777777766542110 01 346777888
Q ss_pred HHHhh-cchhhHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch------HHHH
Q 000951 850 GLKRI-AAFQESHFVLRGMAEKGLTPK-------CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD------VAES 915 (1211)
Q Consensus 850 ~~~~~-g~~~eA~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~------~~~~ 915 (1211)
+|... |++++|+..|+++++ +.|+ ..++..++.++...|++++|+..|+++.+....... ..+.
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 88885 888888888888887 3331 246788888999999999999999998875422221 1567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCccc-C---HHHHHHHHHHhh--hhCCHHHHHHHHHHHHhcCCCCch
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP-T---IATFTTLIHKFC--KEAKFVDALKLKGTMELSGVKLDV 981 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~---~~~~~~L~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 981 (1211)
.++.++...|++++|+..|+++++..|.- + ...+..++..+. ..+++++|+..|+.+. .++|+.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWK 273 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHH
Confidence 78888999999999999999998866441 1 123445566554 4567888888876443 235543
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=7.4e-11 Score=119.32 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=61.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc
Q 000951 811 VLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRV 889 (1211)
Q Consensus 811 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 889 (1211)
.++..+...|++++|++.|+++.+.. +.+...+..++..|...|++++|+..++++++ ..|+ ...+..++..+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHh
Confidence 33334444444444444444433211 11233333444444444444444444444443 2232 23333444444444
Q ss_pred CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHH
Q 000951 890 GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLK 969 (1211)
Q Consensus 890 g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~ 969 (1211)
|++++|.+.++++.+. .+.+..++..++.++...|++++|++.++++++..+. +..++..++.++...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444333 1223333444444444444444444444444443322 3344444444444444444444444
Q ss_pred H
Q 000951 970 G 970 (1211)
Q Consensus 970 ~ 970 (1211)
+
T Consensus 168 ~ 168 (186)
T 3as5_A 168 K 168 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=6.2e-10 Score=127.26 Aligned_cols=236 Identities=10% Similarity=-0.025 Sum_probs=127.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CH
Q 000951 739 YNILLHGYSKKKDLLMCSMLLNTMKMEGL-LPDK----LTCHSLILGFCETGMLEVGFKFLKKMIAE----GTM--V-DC 806 (1211)
Q Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~ 806 (1211)
++.++..+...|++++|...++++++... .++. .++..+...+...|++++|+..++++++. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 34444455555555555555555443100 0011 12334455566666666666666665543 111 1 12
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHH-
Q 000951 807 FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP----DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYI- 880 (1211)
Q Consensus 807 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~- 880 (1211)
..+..++.+|...|++++|.+.+++..+..... ...++..++..+...|++++|...++++++....++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 344455566666666666666666665422111 1234556666666677777777777766652112111 1111
Q ss_pred ----HHHHHHHhcCChhhHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc----cCH-HH
Q 000951 881 ----TLINGMCRVGNFQGAFKLKDEMEALGISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV----PTI-AT 948 (1211)
Q Consensus 881 ----~l~~~~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~----p~~-~~ 948 (1211)
..+..+...|++++|...++++......+ ....+..++.++...|++++|...++++++.... ++. .+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 23334567777777777777765432111 1223456677777778888888777777653211 122 36
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 949 FTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 949 ~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
+..++.++...|++++|...++....
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66778888888888888887775543
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=1.5e-10 Score=117.06 Aligned_cols=163 Identities=8% Similarity=0.001 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
...|..++..+...|++++|+..|+++++ ..|+ ..++..++.++...|++++|...++++.+.. +.+..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677888999999999999999999987 6664 5789999999999999999999999998773 667888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChh
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVM 998 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 998 (1211)
.+...|++++|.+.++++++..+. +..++..++.++...|++++|+..++..... .|+ ...+..++.+|...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998765 8899999999999999999999999887766 564 458899999999999999
Q ss_pred HHHHHHHHHHH
Q 000951 999 PAFELYEEMKH 1009 (1211)
Q Consensus 999 ~a~~~~~~~~~ 1009 (1211)
+|.+.+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998866
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=1.2e-10 Score=120.30 Aligned_cols=132 Identities=10% Similarity=-0.022 Sum_probs=97.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
++.++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++.+|. ++.+|..+|.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 8888888888888888888888763 667778888888888889999999999998888766 78888888888877664
Q ss_pred H--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhH
Q 000951 962 F--VDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTY 1019 (1211)
Q Consensus 962 ~--~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 1019 (1211)
. +.+...++... ...|....++.++.++...|++++|+..+++..+ +.|+....
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHH
Confidence 3 34455544332 1133333566677777788888999988888854 56665433
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=9.7e-11 Score=127.82 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=162.3
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHH
Q 000951 782 CETGMLEVGFKFLKKMIAE-------GTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAI 847 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 847 (1211)
...|++++|+.+++++++. ..+....++..++.+|...|++++|++.|+++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888887763 11223667888999999999999999999988753 1122 25678899
Q ss_pred HHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc------C-CCCchHH
Q 000951 848 IMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL------G-ISSSDVA 913 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------~-~~~~~~~ 913 (1211)
+..|...|++++|+..|+++++. .-.|+ ..++..++.++...|++++|...|+++++. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999873 11343 378889999999999999999999999764 1 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-------ccc-CHHHHHHHHHHhhhhCCHHHHHHHHHHH---HhcC-CCCch
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMR-------LVP-TIATFTTLIHKFCKEAKFVDALKLKGTM---ELSG-VKLDV 981 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~-------~~p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~---~~~~-~~p~~ 981 (1211)
+..++.++...|++++|+..++++++.. ..+ ....|..++..+...+....+....... ...+ ..|+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888999999999999999999998741 112 3455666666666555544443332211 1111 12433
Q ss_pred -HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 982 -VSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 982 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678889999999999999999988765
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=4.8e-11 Score=115.75 Aligned_cols=144 Identities=9% Similarity=-0.028 Sum_probs=98.5
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 925 (1211)
|+.++...|++++|+..+++.+. ..|+ ...+..++.+|...|++++|++.|+++++.. |.+..+|..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 45566666777777777777665 5554 3566777777777888888888888777663 556777777888888888
Q ss_pred CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHH-HHHHHhcCCCCchH-HHHHHHHHHHhCCC
Q 000951 926 KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKL-KGTMELSGVKLDVV-SYNVLISGLCANGD 996 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 996 (1211)
++++|+..|+++++.+|. ++.+|..++.+|.+.|++++|... ++..... .|+.. +|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 888888888888877655 777788888888888887776654 3544444 67554 55555556666653
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.5e-10 Score=124.49 Aligned_cols=227 Identities=14% Similarity=0.021 Sum_probs=163.6
Q ss_pred HccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHhhHHHH
Q 000951 747 SKKKDLLMCSMLLNTMKME-----G-LLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAE------GTMV-DCFTFNVL 812 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 812 (1211)
...|++++|+..|+++++. + -.| ...++..++..|...|++++|+..++++++. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877752 1 123 3457788899999999999999999999875 1122 35678889
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHC------CCCC-ChhhHHHHHHHHHhhcchhhHHHHHHHHHHc------CCCCC-hhH
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNML------GVVP-DTNTQDAIIMGLKRIAAFQESHFVLRGMAEK------GLTPK-CTQ 878 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------g~~p~-~~~ 878 (1211)
+.+|...|++++|++.|+++.+. ...| ...++..++..|...|++++|+..|+++++. +-.|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999763 1112 3678899999999999999999999999973 11443 378
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc-------C-CCCchHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCccc
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEAL-------G-ISSSDVAESAMVRGLAHCGK------VEEAMLVLNRMLRMRLVP 944 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~------~~eA~~~~~~~~~~~~~p 944 (1211)
+..++.++...|++++|...|+++++. . .+.....+..+...+...+. +.++...++......+ .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-T 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH-H
Confidence 899999999999999999999999753 1 12223345555555544333 3344444333222222 1
Q ss_pred CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 945 TIATFTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 945 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
...++..++.+|...|++++|...++....
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567899999999999999999999886553
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=4.8e-11 Score=115.77 Aligned_cols=145 Identities=6% Similarity=-0.128 Sum_probs=115.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVG 890 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 890 (1211)
|+.++...|++++|++.+++..... +.+...+..++..|.+.|++++|+..|+++++ ++|+ ..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 5566777888889988888876421 12366778888999999999999999999998 7885 488889999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 891 NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLV-LNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 891 ~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
++++|+..|+++++.. |.+..++..++.+|.+.|++++|.+. ++++++.+|. ++.+|...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 9999999999998873 56778889999999999998876655 5889988766 88888888888877775
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=4.3e-10 Score=121.20 Aligned_cols=189 Identities=10% Similarity=0.048 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCC-CC-hhhH
Q 000951 770 DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD---CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVV-PD-TNTQ 844 (1211)
Q Consensus 770 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~ 844 (1211)
+...+..++..+...|++++|+..|+++++... .+ ..++..++.+|.+.|++++|++.|+++++..+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455666677788888888888888888887532 22 556777788888888888888888888764321 12 4567
Q ss_pred HHHHHHHHh--------hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951 845 DAIIMGLKR--------IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES 915 (1211)
Q Consensus 845 ~~l~~~~~~--------~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 915 (1211)
..++.++.. .|++++|+..|+++++ ..|+. .....+.. +..+.. .....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 777777777 8888888888888887 55653 22211111 111100 0011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhcCCCCch
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKE----------AKFVDALKLKGTMELSGVKLDV 981 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~ 981 (1211)
.++.+|...|++++|+..|+++++..|.. ...++..++.+|... |++++|+..|+..... .|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 56777777777777777777777765432 235667777777655 7777777777766554 5644
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=8e-10 Score=119.04 Aligned_cols=211 Identities=9% Similarity=-0.066 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-Hhh
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPD----KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VD-CFT 808 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~ 808 (1211)
+...+..++..+.+.|++++|+..|+++++. .|+ ...+..++.+|...|++++|+..|+++++.... +. ..+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 6888899999999999999999999999984 453 467778899999999999999999999996321 12 557
Q ss_pred HHHHHHHHHh--------cCcHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHH
Q 000951 809 FNVLMRKCCE--------AGEMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQY 879 (1211)
Q Consensus 809 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~ 879 (1211)
+..++.+|.. .|++++|++.|+++++.. |+ ...+..+.......+. + ...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~-------~-----------~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAK-------L-----------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHH-------H-----------HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHH-------H-----------HHHH
Confidence 7888899999 999999999999998743 43 2333222211111100 0 1236
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCcccC--
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHC----------GKVEEAMLVLNRMLRMRLVPT-- 945 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~p~-- 945 (1211)
..++.+|...|++++|+..|+++++..... ...++..++.+|... |++++|+..|+++++..|...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 778888999999999999999998753211 355788888888866 889999999999998775521
Q ss_pred HHHHHHHHHHhhhhCCHHHHHH
Q 000951 946 IATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 946 ~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
..+...+..++...|+++++..
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 2455566666666666655443
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=6e-09 Score=112.53 Aligned_cols=229 Identities=9% Similarity=-0.011 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcC--cHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhh---cc
Q 000951 787 LEVGFKFLKKMIAEGTMVD-CFTFNVLMRKCCEAG--EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGL----KRI---AA 856 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 856 (1211)
.++|++.+++++.. .|+ ..+|+....++...| +++++++.++.++... +.+..+|+.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777773 343 456677777777777 7777777777777643 23456666666655 444 67
Q ss_pred hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC------H
Q 000951 857 FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQ--GAFKLKDEMEALGISSSDVAESAMVRGLAHCGK------V 927 (1211)
Q Consensus 857 ~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~--eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 927 (1211)
+++++.+++++++ .+|. ..+|.....++.+.|.++ ++++.++++++.+ +.+..+|+..+.++...|+ +
T Consensus 126 ~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7888888888888 7775 477888888888888888 8888888888764 6677788888888888776 8
Q ss_pred HHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH-HHHHHHHhcC-CCC-chHHHHHHHHHHHhCCChhHHHHHH
Q 000951 928 EEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL-KLKGTMELSG-VKL-DVVSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 928 ~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~-~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
+++++.++++++.+|. |..+|+.+..++.+.|+..++. .........+ ..| +...+..++.+|...|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8999999999998877 8999999999998888855544 4544333321 124 3447888888998999999999999
Q ss_pred HHHHHcCCccCh-hhHHHHH
Q 000951 1005 EEMKHKGLCPNS-TTYSVLI 1023 (1211)
Q Consensus 1005 ~~~~~~g~~p~~-~~~~~l~ 1023 (1211)
+.+.+ .+.|.. .-|....
T Consensus 282 ~~l~~-~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 282 DLLKS-KYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHH-TTCGGGHHHHHHHH
T ss_pred HHHHh-ccChHHHHHHHHHH
Confidence 98864 245554 5555443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=6e-10 Score=115.04 Aligned_cols=137 Identities=7% Similarity=-0.024 Sum_probs=94.5
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC 924 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1211)
.++.+|.+.|++++|+..|+++++ +.|+ ...+..++.++...|++++|+..|+++++.. |.+..++..++.+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 377777788888888888888887 6775 4777788888888888888888888887763 55677777888777665
Q ss_pred CC--HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951 925 GK--VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLIS 989 (1211)
Q Consensus 925 g~--~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 989 (1211)
|+ .+++...+++++. +.|....+..++.++...|++++|+..|+..... .|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 54 4456666666643 3334456667777777888888888887755544 777655444444
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.4e-10 Score=140.88 Aligned_cols=172 Identities=9% Similarity=-0.066 Sum_probs=87.5
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 000951 782 CETGMLEVGFKFLKKMI--------AEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKR 853 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 853 (1211)
...|++++|++.+++++ +. .+.+...+..++.+|...|++++|++.|+++++.. +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666666 21 12234455555555666666666666666555422 1234455555555555
Q ss_pred hcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAML 932 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 932 (1211)
.|++++|+..|+++++ ++|+. ..+..++.++...|++++ ++.|+++++.+ +.+..++..++.++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555 44532 445555555555555555 55555555442 3344445555555555555555555
Q ss_pred HHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 933 VLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 933 ~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
.|+++++.+|. +..+|..++.++...|
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 55555544433 3444555555544433
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=6.5e-10 Score=137.07 Aligned_cols=172 Identities=10% Similarity=-0.048 Sum_probs=126.3
Q ss_pred HccCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 000951 747 SKKKDLLMCSMLLNTMK--------MEGLLP-DKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCC 817 (1211)
Q Consensus 747 ~~~g~~~~A~~~~~~~~--------~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 817 (1211)
...|++++|++.+++++ + ..| +...+..++.+|...|++++|+..++++++.+ +.+...+..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 66788888888888887 4 345 34566677788888888888888888888742 234667788888888
Q ss_pred hcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHH
Q 000951 818 EAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAF 896 (1211)
Q Consensus 818 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~ 896 (1211)
..|++++|++.|+++++.. +.+...|..++.+|.+.|++++ +..|+++++ ++|+. ..+..++.++...|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887643 2346777888888888888888 888888888 77754 77888888888888888888
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 000951 897 KLKDEMEALGISSSDVAESAMVRGLAHCGK 926 (1211)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 926 (1211)
+.|+++++.+ +.+..++..++.++...|+
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 8888887652 4446677777777766554
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=1.7e-08 Score=109.02 Aligned_cols=223 Identities=4% Similarity=-0.076 Sum_probs=154.2
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hhc---C
Q 000951 751 DLLMCSMLLNTMKMEGLLPD-KLTCHSLILGFCETG--MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKC----CEA---G 820 (1211)
Q Consensus 751 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 820 (1211)
..++|+..+.+++. +.|+ ..+|+.-..++...+ ++++++++++.++..+. -+..+|+....++ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 34567777777776 5563 345666666666666 77777777777777532 2345565555555 444 6
Q ss_pred cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh--hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC------
Q 000951 821 EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ--ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN------ 891 (1211)
Q Consensus 821 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~------ 891 (1211)
++++++++++++++.. +.+..+|+.-..++.+.|.++ +++..++++++ .+|. ..+|.....+..+.|.
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 7778888888777644 346777777777777777777 88888888887 6664 4667777777777666
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCC---cccCHHHHHHHHHHhhhhCCHHHHHH
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV-EEAMLVLNRMLRMR---LVPTIATFTTLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~---~~p~~~~~~~L~~~~~~~g~~~~A~~ 967 (1211)
++++++.+++++... +.+..+|+.+..++.+.|+. ++...+.+++++.+ +. ++.++..++.+|.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHH
Confidence 788888888887763 66777888888888888774 44556777666654 32 77788888888888888888888
Q ss_pred HHHHHHhcCCCCchH
Q 000951 968 LKGTMELSGVKLDVV 982 (1211)
Q Consensus 968 ~~~~~~~~~~~p~~~ 982 (1211)
+++.+.. ..+|...
T Consensus 280 ~~~~l~~-~~Dpir~ 293 (306)
T 3dra_A 280 VYDLLKS-KYNPIRS 293 (306)
T ss_dssp HHHHHHH-TTCGGGH
T ss_pred HHHHHHh-ccChHHH
Confidence 8877654 1366444
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=3e-09 Score=111.44 Aligned_cols=83 Identities=6% Similarity=-0.160 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHH
Q 000951 771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVD--CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDA 846 (1211)
Q Consensus 771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 846 (1211)
...+..++..+...|++++|+..|+++++...... ...+..++.+|.+.|++++|++.|+++++..+... ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777777888888888888776422211 34666677777778888888888877776432211 124555
Q ss_pred HHHHHHh
Q 000951 847 IIMGLKR 853 (1211)
Q Consensus 847 l~~~~~~ 853 (1211)
++.++..
T Consensus 84 ~g~~~~~ 90 (225)
T 2yhc_A 84 RGLTNMA 90 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.08 E-value=3.6e-09 Score=110.77 Aligned_cols=183 Identities=8% Similarity=-0.030 Sum_probs=116.7
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQY 879 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~~ 879 (1211)
...+..++..+...|++++|++.|+++++...... ...+..++.+|.+.|++++|+..|+++++ ..|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 44566677778888888888888888876432211 35677778888888888888888888887 55543 256
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHH----------
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATF---------- 949 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~---------- 949 (1211)
..++.++...|.. .+ ..+..++..+...|++++|+..|+++++..|. +..++
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHH
Confidence 6666666543210 00 01112233334456666666666666665543 33222
Q ss_pred -------HHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 000951 950 -------TTLIHKFCKEAKFVDALKLKGTMELSGVKLDV----VSYNVLISGLCANGDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 950 -------~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 1010 (1211)
..++..|.+.|++++|+..|+.+... .|+. ..+..++.+|...|++++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 45677788888888888888877665 5643 35778888888888888888888877664
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.2e-08 Score=105.57 Aligned_cols=160 Identities=13% Similarity=-0.019 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----cHHHHHHHHHHHHHCCCCCChhhHHH
Q 000951 771 KLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAG----EMGKAFDLFNIMNMLGVVPDTNTQDA 846 (1211)
Q Consensus 771 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ 846 (1211)
..++..+...|...+++++|+..|+++.+.| +...+..|+.+|.. + ++++|+++|+++.+. .++..+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---GSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---CCHHHHHH
Confidence 3344444444444455555555555444432 23344444444444 3 445555555544432 23344444
Q ss_pred HHHHHHh----hcchhhHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951 847 IIMGLKR----IAAFQESHFVLRGMAEKGLTPK---CTQYITLINGMCR----VGNFQGAFKLKDEMEALGISSSDVAES 915 (1211)
Q Consensus 847 l~~~~~~----~g~~~eA~~~~~~~~~~g~~p~---~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~~~~~~~~ 915 (1211)
|+..|.. .+++++|+.+|+++.+ ..|. ..++..|+.+|.. .+++++|+..|+++.+. +.+..++.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAAR--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTS--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHH--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 4444443 4444444444444444 2221 3444444444444 44445555555554443 12233444
Q ss_pred HHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 000951 916 AMVRGLAHC-G-----KVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 916 ~l~~~~~~~-g-----~~~eA~~~~~~~~~~~ 941 (1211)
.++.+|... | ++++|+..|+++.+.+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444322 1 4555555555554443
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=4.4e-08 Score=104.29 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 000951 755 CSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTM-VDCFTFNVLMRKCCEAGEMGKAFDLFNIMN 833 (1211)
Q Consensus 755 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 833 (1211)
|+..+++.++.+ .++..++..++.++...|++++|++.+.+.+..+.. -+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444322 233333334444555555555555555554443221 123334444445555555555555555544
Q ss_pred H
Q 000951 834 M 834 (1211)
Q Consensus 834 ~ 834 (1211)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 3
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1.9e-09 Score=117.63 Aligned_cols=163 Identities=12% Similarity=0.015 Sum_probs=113.8
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchH-HHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDV-AESA 916 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~ 916 (1211)
.+...+..++..+.+.|++++|+..|+++++ .+|+. ..+..++.++...|++++|...++++... .|+.. ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3455666677777777777777777777777 66753 66777777777777777777777777654 23333 2233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHh
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV---VSYNVLISGLCA 993 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~ 993 (1211)
.+..+...++.++|+..|+++++.+|. +...+..++.+|...|++++|+..|+..... .|+. ..+..++.+|..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 344466667777778888888777665 7777888888888888888888877766655 5543 367777778878
Q ss_pred CCChhHHHHHHHHHH
Q 000951 994 NGDVMPAFELYEEMK 1008 (1211)
Q Consensus 994 ~g~~~~a~~~~~~~~ 1008 (1211)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 888888777776653
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.1e-09 Score=118.68 Aligned_cols=129 Identities=16% Similarity=-0.001 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcC---CCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-----chHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKG---LTPK--CTQYITLINGMCRVGNFQGAFKLKDEMEALGISS-----SDVA 913 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----~~~~ 913 (1211)
|..++.+|...|++++|+..|+++++.- -+|. ..++..++.+|.. |++++|+..|+++++..... ...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3344444444444444444444444310 0111 1345555556655 66666666666654321000 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
+..++.+|.+.|++++|+..|+++++..+.. ....+..++.++...|++++|+..|+...
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566666666666666666666666542211 12355666666666677777777666544
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.04 E-value=2.5e-09 Score=118.17 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-------
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGV---VPD--TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK------- 875 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~------- 875 (1211)
+++.++.+|...|++++|++.|+++++... .+. ..++..++.+|.. |++++|+..|+++++ +.|.
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~ 154 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA--VFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHH
Confidence 344444444444455555554444432100 000 2234444444444 445555555544443 1110
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
..++..++.++...|++++|+..|++++
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1334444444444555555555554444
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=1e-09 Score=109.88 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH-
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG- 920 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~- 920 (1211)
.+..++..+.+.|++++|+..|+++++ ..|+. ..+..++.++...|++++|+..|+++.+.. |+...+..++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345556666666666777766666665 55643 566667777777777777777777665442 233333322222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhCCCh
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD---VVSYNVLISGLCANGDV 997 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 997 (1211)
+...+...+|+..|+++++.+|. ++.++..++.++...|++++|+..|+..... .|+ ...+..++.+|...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 12223334567777777776655 6777777777777777777777777765544 553 33667777777777777
Q ss_pred hHHHHHHHHHH
Q 000951 998 MPAFELYEEMK 1008 (1211)
Q Consensus 998 ~~a~~~~~~~~ 1008 (1211)
++|...+++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.1e-08 Score=105.89 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----ChhhHHHHH
Q 000951 824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG----NFQGAFKLK 899 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~eA~~~~ 899 (1211)
+|++.|++..+. .++..+..++..|...+++++|+.+|+++.+.| +..++..|+..|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 355555555553 355566666666666666666666666666532 34556666666665 4 667777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCcc-cCHHHHHHHHHHhhh----hCCHHHHHHHHH
Q 000951 900 DEMEALGISSSDVAESAMVRGLAH----CGKVEEAMLVLNRMLRMRLV-PTIATFTTLIHKFCK----EAKFVDALKLKG 970 (1211)
Q Consensus 900 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~-p~~~~~~~L~~~~~~----~g~~~~A~~~~~ 970 (1211)
+++.+.+ +..++..++.+|.. .+++++|++.|+++.+.++. .++.++..|+.+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776543 45566666666665 66777777777777766532 025667777777766 667777777776
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhC-C-----ChhHHHHHHHHHHHcC
Q 000951 971 TMELSGVKLDVVSYNVLISGLCAN-G-----DVMPAFELYEEMKHKG 1011 (1211)
Q Consensus 971 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g 1011 (1211)
...+. .++..+++.|+.+|... | ++++|.+.+++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65544 23445666777766543 2 6777777777766644
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=2.9e-09 Score=99.31 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
++|+. ..+..++..+.+.|++++|++.|+++++.. |.+..+|..++.+|.+.|++++|+..|+++++.+|. +..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 45543 555566666666666666666666666552 445556666666666666666666666666666544 566666
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHH
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLI 988 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~ 988 (1211)
.+|.+|...|++++|+..|+..... .|+.. .+..+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 6666666666666666666655544 55433 444443
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=7e-09 Score=98.04 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA 922 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1211)
|..++..+...|++++|+.+|+++++ ..|+ ...+..++..+...|++++|...++++.+.+ +.+...+..++.++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34444444444555555555554444 2232 2344444555555555555555555554432 333444445555555
Q ss_pred hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
..|++++|++.++++++..+. +..++..++.++...|++++|...++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555555554332 44455555555555555555555554443
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=3e-09 Score=99.26 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=95.4
Q ss_pred CCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHH
Q 000951 838 VPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAES 915 (1211)
Q Consensus 838 ~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 915 (1211)
.|+ ...+...+..|.+.|++++|+..|+++++ +.|+ ..+|..++.++...|++++|+..|+++++.+ +.+..+|.
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 344 45677788888888888888888888888 7775 4788888999999999999999999998774 66778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
.++.++...|++++|++.|+++++.+|. +..++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 9999999999999999999999998876 888888777654
No 111
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=1.8e-08 Score=107.19 Aligned_cols=178 Identities=7% Similarity=-0.064 Sum_probs=87.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 825 AFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 825 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
|+..|++..+.+ .++..++..++.++...|++++|+.++.+.+..+-.++ ...+..++.++.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555554432 23344444555566666666666666666554222122 2555555666666666666666666665
Q ss_pred HcCCCC-----chHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 904 ALGISS-----SDVAESAMVRG--LAHCG--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 904 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
+. .| +..+...++.+ ....| ++++|..+|+++.+..+ +...-..|..++.+.|++++|+..++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 33 23333333322 22223 56666666666655432 211111222256666666666666654332
Q ss_pred cC--------CCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 975 SG--------VKLDVV-SYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 975 ~~--------~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.- ..|+.. +..+++......|+ +|.+++.++++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 20 024333 44455444444454 66666666654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=5.6e-09 Score=113.81 Aligned_cols=162 Identities=12% Similarity=-0.024 Sum_probs=98.9
Q ss_pred HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951 806 CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLIN 884 (1211)
Q Consensus 806 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~ 884 (1211)
...+..++..+...|++++|++.|+++++.. +.+...+..++.+|.+.|++++|+..+++++. ..|+. ........
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence 3444555555666666666666666665532 22355566666666666666666666666655 44544 22223333
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHH
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFV 963 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~ 963 (1211)
.+...++.++|+..|+++++.. |.+..++..++.+|...|++++|+..|+++++.+|.. +..++..|+.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 4555666666677777666552 5556666777777777777777777777777765442 2566777777777777777
Q ss_pred HHHHHHHH
Q 000951 964 DALKLKGT 971 (1211)
Q Consensus 964 ~A~~~~~~ 971 (1211)
+|...|+.
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77766654
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=2.2e-09 Score=107.46 Aligned_cols=160 Identities=11% Similarity=0.014 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHH-HH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLING-MC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~-~~ 887 (1211)
...++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..|+++++ ..|+...+..++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 3444555556666666666666554321 22355566666666666666666666666555 33422222222211 11
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhhhCCHHHHH
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCKEAKFVDAL 966 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~~g~~~~A~ 966 (1211)
..+...+|+..++++++.. |.+..++..++.++...|++++|+..|+++++.+|.+ +..++..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223344677777777652 4556777777777888888888888888887776553 4567777888888888888887
Q ss_pred HHHHHH
Q 000951 967 KLKGTM 972 (1211)
Q Consensus 967 ~~~~~~ 972 (1211)
..|+..
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=1.4e-09 Score=104.68 Aligned_cols=106 Identities=5% Similarity=-0.149 Sum_probs=66.7
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
++|+. ..+..++..+...|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..|+++++.+|. ++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 45543 556666666666666666666666666552 455666666666666666666666666666666554 566666
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhcCCCCch
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELSGVKLDV 981 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 981 (1211)
.+|.+|...|++++|+..|+..... .|+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 6666666666666666666655544 4544
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=5.6e-09 Score=100.40 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK 958 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~ 958 (1211)
...+.+.+...+.+.+++++ .|.+..++..++..+.+.|++++|+..|+++++.+|. ++..|..+|.+|..
T Consensus 12 ~~~l~~~~~~~~~l~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAI--------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCS--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44455555555555555443 2445668899999999999999999999999999876 99999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 959 EAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 959 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
.|++++|+..|+..... .|+ +..|+.++.+|...|++++|++.+++..+. .|++
T Consensus 83 ~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp TTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 99999999999987776 885 458999999999999999999999999873 4554
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=6.4e-09 Score=126.15 Aligned_cols=152 Identities=8% Similarity=-0.048 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHH
Q 000951 785 GMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVL 864 (1211)
Q Consensus 785 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 864 (1211)
|++++|++.++++++.. +.+...+..++.+|...|++++|++.|+++++.. +.+...|..++..|...|++++|+..|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455555555554421 1123444445555555555555555555554422 122444444444444444555555544
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 000951 865 RGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC---GKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 865 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~~ 940 (1211)
+++++ ..|+ ...+..++.++...|++++|.+.|+++.+.. +.+..++..++.++... |++++|.+.|+++++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 44444 3343 2444444444444444444444444444431 23334444444444444 4444444444444444
Q ss_pred C
Q 000951 941 R 941 (1211)
Q Consensus 941 ~ 941 (1211)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.95 E-value=2.3e-07 Score=100.60 Aligned_cols=194 Identities=7% Similarity=-0.058 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc--hhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC-hhhHHH
Q 000951 822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA--FQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN-FQGAFK 897 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-~~eA~~ 897 (1211)
+++++++++.++... +.+..+|+.-..++...|+ +++++..++++++ .+|. ..+|.....+....|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 567777777777643 3467777777777777774 7788888888887 7774 4677777777777777 588888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh----
Q 000951 898 LKDEMEALGISSSDVAESAMVRGLAHC--------------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE---- 959 (1211)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~---- 959 (1211)
.++++++.+ +.+..+|+..+.++.+. +.++++++.+++++..+|. |..+|+.+.+.+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 888888763 66777787777766655 4588999999999998877 999998888777666
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchH-HHHHHHH---HHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHH
Q 000951 960 -------AKFVDALKLKGTMELSGVKLDVV-SYNVLIS---GLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLID 1024 (1211)
Q Consensus 960 -------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~ 1024 (1211)
+.++++++.++.+.+. .||.. .+..++. .....|..+++...+.++++ +.|.. .-|..+.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence 4688999988887776 88763 3322222 22245777788888888865 66666 44544443
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=3e-08 Score=93.64 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
.+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++++.++. +..+|..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 57788999999999999999999998764 556778889999999999999999999999998755 7889999999999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 958 KEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 958 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
..|++++|+..++.+... .|+ ...+..++.+|...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 999999999999887765 564 45888899999999999999999998866
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=1e-08 Score=124.30 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=122.6
Q ss_pred cCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHH
Q 000951 819 AGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFK 897 (1211)
Q Consensus 819 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~ 897 (1211)
.|++++|++.|+++.+.. +.+...|..++..|...|++++|+..|+++++ ..|+ ...+..++.++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988643 33578899999999999999999999999998 7786 4788999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh---CCHHHHHHHHHHHHh
Q 000951 898 LKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE---AKFVDALKLKGTMEL 974 (1211)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~---g~~~~A~~~~~~~~~ 974 (1211)
.|+++++.. +.+..++..++.+|...|++++|++.|+++++.++. +..++..++.++... |++++|.+.++...+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999998773 566788899999999999999999999999998765 788999999999999 999999999887766
Q ss_pred cCCCCchH-HHHHHH
Q 000951 975 SGVKLDVV-SYNVLI 988 (1211)
Q Consensus 975 ~~~~p~~~-~~~~l~ 988 (1211)
. .|+.. .+..++
T Consensus 157 ~--~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 Q--GVGAVEPFAFLS 169 (568)
T ss_dssp H--TCCCSCHHHHTT
T ss_pred c--CCcccChHHHhC
Confidence 5 66544 444443
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=2.8e-08 Score=104.37 Aligned_cols=189 Identities=7% Similarity=-0.112 Sum_probs=121.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-HhhHHHH-------HHHHHhcCcHHHHHHHHHHHHHCCCCCC--------------
Q 000951 783 ETGMLEVGFKFLKKMIAEGTMVD-CFTFNVL-------MRKCCEAGEMGKAFDLFNIMNMLGVVPD-------------- 840 (1211)
Q Consensus 783 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------- 840 (1211)
..+++..|.+.|.++.+. .|+ ...|..+ ...+...++..+++..+++..+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 456666666666666663 333 4555555 4455555555555555555443 2222
Q ss_pred --------hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--
Q 000951 841 --------TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS-- 910 (1211)
Q Consensus 841 --------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~-- 910 (1211)
...+..++..+...|++++|..+|..+.. ..|+......++..+.+.|+|++|+..|+.+.+.. .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 11233455667777788888877777765 45654466677777778888888888887554331 121
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
..++..++.++...|++++|+..|+++..-+..| ...++..++.++.+.|+.++|..+|+.+.+. .|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 3367777888888888888888888887543224 3346777888888888888888888877766 676
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=4.5e-07 Score=98.59 Aligned_cols=231 Identities=8% Similarity=0.017 Sum_probs=151.3
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC-cHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-c-chhh
Q 000951 784 TGMLEVGFKFLKKMIAEGTMV-DCFTFNVLMRKCCEAG-EMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRI-A-AFQE 859 (1211)
Q Consensus 784 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~e 859 (1211)
.+..++|++++++++.. .| +..+|+....++...| .++++++.++.++... +.+..+|+.-..++.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 34445677777777664 23 3455666666666666 4777777777776643 33566676666666665 5 6677
Q ss_pred HHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChh--------hHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC----
Q 000951 860 SHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQ--------GAFKLKDEMEALGISSSDVAESAMVRGLAHCGK---- 926 (1211)
Q Consensus 860 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~--------eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 926 (1211)
++..++++++ .+|. ..+|.....+..+.|.++ ++++.++++++.. +.+..+|+..+.++.+.++
T Consensus 144 EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 7777777776 6664 366666666666666665 7888888887763 6677788888888877776
Q ss_pred ---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH--------------------HHHHHHHHHHHhcC----CC-
Q 000951 927 ---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF--------------------VDALKLKGTMELSG----VK- 978 (1211)
Q Consensus 927 ---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~~- 978 (1211)
++++++.+++++..+|. |..+|+.+...+.+.|+- .+.......+.... ..
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 78899999999998877 889999988888877764 12222211111110 01
Q ss_pred CchHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHH
Q 000951 979 LDVVSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVL 1022 (1211)
Q Consensus 979 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l 1022 (1211)
+....+..|+.+|...|+.++|.++++.+.+ ...|-. .-|.-.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~~~ 343 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWEFR 343 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHHHH
Confidence 2334678888899999999999999998864 244444 344433
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2.7e-08 Score=104.52 Aligned_cols=198 Identities=7% Similarity=-0.076 Sum_probs=144.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCC-CHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC--------------
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSL-------ILGFCETGMLEVGFKFLKKMIAEGTMVD-------------- 805 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------- 805 (1211)
..+++..|.+.|.++.+ +.| ....|..+ ..++...++..+++..+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46777777777777776 455 34466655 4555566666666666666555 2222
Q ss_pred --------HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC--
Q 000951 806 --------CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-- 875 (1211)
Q Consensus 806 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-- 875 (1211)
....-.+..++...|++++|.++|+.+...+ |+......++..+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1233456678889999999999998887543 544478888889999999999999998765511 221
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
...+..++.++...|++++|+..|+++......| ...+....+.++.+.|+.++|...|+++...+|. ..++..|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~ 248 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence 2578899999999999999999999998544324 4457788899999999999999999999997754 55555553
Q ss_pred H
Q 000951 954 H 954 (1211)
Q Consensus 954 ~ 954 (1211)
.
T Consensus 249 ~ 249 (282)
T 4f3v_A 249 D 249 (282)
T ss_dssp C
T ss_pred C
Confidence 3
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=7.5e-09 Score=115.54 Aligned_cols=150 Identities=9% Similarity=-0.060 Sum_probs=111.5
Q ss_pred hcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------------hHHHHHH
Q 000951 854 IAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---------------DVAESAM 917 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---------------~~~~~~l 917 (1211)
.+++++|+..|+..++ ..|+ ...+..++..+...|++++|+..|+++++.. +.+ ..++..+
T Consensus 126 L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHH
Confidence 3455666666655554 4453 3567777777777777777777777777653 222 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCC
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGD 996 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 996 (1211)
+.+|.+.|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+..... .|+.. .+..++.++...|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 88888899999999999999888765 8888888999999999999999888877665 77544 77888888888888
Q ss_pred hhHH-HHHHHHHHH
Q 000951 997 VMPA-FELYEEMKH 1009 (1211)
Q Consensus 997 ~~~a-~~~~~~~~~ 1009 (1211)
+++| ...++.|..
T Consensus 280 ~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 280 QLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 8888 456666643
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=1.6e-08 Score=97.37 Aligned_cols=108 Identities=9% Similarity=-0.009 Sum_probs=62.2
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 864 LRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 864 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
|+++++ +.|+. ..+..++..+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++.+|
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344443 44532 455556666666666666666666665542 44555566666666666666666666666666554
Q ss_pred ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
. ++.+|..++.+|...|++++|+..|+.....
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 5556666666666666666666665544433
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=2.3e-07 Score=95.89 Aligned_cols=125 Identities=10% Similarity=-0.091 Sum_probs=63.0
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951 845 DAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC 924 (1211)
Q Consensus 845 ~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1211)
..++..+...|++++|+..|++++ .|+...+..++.++...|++++|+..|+++++.. +.+..++..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444444455555555554442 2344445555555555555555555555555442 33444555555555555
Q ss_pred CCHHHHHHHHHHHHhCCcc--------------c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 000951 925 GKVEEAMLVLNRMLRMRLV--------------P-TIATFTTLIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 925 g~~~eA~~~~~~~~~~~~~--------------p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
|++++|++.|+++++..+. | ...+|..++.+|...|++++|+..|+....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555554322 0 124555555566666666666655554443
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=1.5e-07 Score=97.46 Aligned_cols=128 Identities=11% Similarity=-0.055 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 887 (1211)
+..++..+...|++++|++.|++++ .|+...|..++..|...|++++|+..|+++++ ..|+ ...+..++.++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH
Confidence 4445556666677777777666653 34566677777777777777777777777776 4554 366777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCc----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 888 RVGNFQGAFKLKDEMEALGISSS----------------DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..|++++|++.|+++++.. +.+ ..++..++.++...|++++|...|+++++..|.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776542 222 267888888999999999999999999887754
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=3.9e-07 Score=99.64 Aligned_cols=162 Identities=4% Similarity=-0.101 Sum_probs=84.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCH----hhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C----hhhHHHH
Q 000951 778 ILGFCETGMLEVGFKFLKKMIAEGT-MVDC----FTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D----TNTQDAI 847 (1211)
Q Consensus 778 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 847 (1211)
+..+...|++++|..+++++.+... .|+. ..+..++..|...|++++|++.|+++++..... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777777665321 1111 122235555556666666666666666532221 1 1245666
Q ss_pred HHHHHhhcchhhHHHHHHHHHH----c-CCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-chHHHHH
Q 000951 848 IMGLKRIAAFQESHFVLRGMAE----K-GLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEAL----GISS-SDVAESA 916 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~----~-g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~-~~~~~~~ 916 (1211)
+.+|...|++++|+..|+++++ . +..|.. .++..++.+|...|++++|+++++++++. +..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666653 1 111111 35555666666666666666666655432 1111 1334555
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHh
Q 000951 917 MVRGLAHCGK-VEEAMLVLNRMLR 939 (1211)
Q Consensus 917 l~~~~~~~g~-~~eA~~~~~~~~~ 939 (1211)
++.+|.+.|+ +++|++.|+++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5555555553 4555555555543
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=1.9e-06 Score=93.67 Aligned_cols=225 Identities=9% Similarity=-0.037 Sum_probs=146.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-C-cHH
Q 000951 748 KKKDLLMCSMLLNTMKMEGLLP-DKLTCHSLILGFCETG-MLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEA-G-EMG 823 (1211)
Q Consensus 748 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 823 (1211)
+.+..++|++++.+++. +.| +..+|+.-..++...| .+++++++++.++..+ +-+..+|+....++... + +++
T Consensus 66 ~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445667777777776 455 3345666666666666 4777777777777643 22455666666666665 5 677
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh--------hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC---
Q 000951 824 KAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ--------ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGN--- 891 (1211)
Q Consensus 824 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~--- 891 (1211)
+++++++++++.. +.+...|+.-..++.+.|+++ ++++.++++++ .+|. ..+|.....++.+.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcccccc
Confidence 7777777777643 345667777777777777766 78888888887 6664 4677777777777765
Q ss_pred ----hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC-----c
Q 000951 892 ----FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKV--------------------EEAMLVLNRMLRMR-----L 942 (1211)
Q Consensus 892 ----~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~eA~~~~~~~~~~~-----~ 942 (1211)
++++++++++++.. .+.+..+|+.+..++.+.|+- .+-.++...+.... .
T Consensus 220 ~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 67888888888766 366777777777777666553 22233322222221 0
Q ss_pred ccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951 943 VPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 943 ~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
.+.+.++.-|+.+|...|+.++|.++++.+.. ..+|-
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpi 335 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQM 335 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGG
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChH
Confidence 23777888899999999999999998887643 23563
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=6e-07 Score=98.17 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCC-CCh----hHHHHH
Q 000951 813 MRKCCEAGEMGKAFDLFNIMNMLGVV-PDT----NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLT-PKC----TQYITL 882 (1211)
Q Consensus 813 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~-p~~----~~~~~l 882 (1211)
+..+...|++++|.+.+++..+.... |+. ..+..++..+...|++++|+..|+++++.... ++. .++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566677777777777777652211 111 11223444455555555555555555552111 111 134455
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 000951 883 INGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+.+|...|++++|+.+|++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=7.3e-07 Score=97.47 Aligned_cols=93 Identities=4% Similarity=-0.062 Sum_probs=41.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC-C----hhhHH
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGTMVD-----CFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP-D----TNTQD 845 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~ 845 (1211)
..+..+...|++++|++.+++.++...... ...+..++..|...|++++|++.|+++.+..... + ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344555566666666666666555321110 0112233344455555555555555554321110 0 22344
Q ss_pred HHHHHHHhhcchhhHHHHHHHHH
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
.++..|...|++++|+..|++++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444444444
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=4.8e-06 Score=97.51 Aligned_cols=218 Identities=6% Similarity=-0.079 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHH
Q 000951 436 TRKAKAVLCKMYRDGLVPNKIIYSTLIYYFCKMGKVTEAMKVYAVMNRNAQGSDHFTCNMLVASLCKGGK-VCEAEDYVG 514 (1211)
Q Consensus 436 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 514 (1211)
++.|..+|+.++.. -|. ++++.+..+|+..+.. .|++..|...+....+.+. .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666543 222 7788888888877764 3477777777666655552 345566676
Q ss_pred HHHhc-CCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 000951 515 HMKRI-GVV-PNSITFDCMIDGYG----TLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH 588 (1211)
Q Consensus 515 ~~~~~-g~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (1211)
..... |.. ++...|...+..+. ..++.+.+.++|++.+......-...|..... +.+..+...+..++...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~-- 149 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDT-- 149 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHH--
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHH--
Confidence 66543 322 25566776666543 23456677777777775321111111211111 11111111222221111
Q ss_pred CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--C-----hHHHHHHHHHHHHcCC
Q 000951 589 IPSAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKG--K-----VVSALLFFEKVVSKRT 661 (1211)
Q Consensus 589 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~ 661 (1211)
.+.+..|..+++.+...-...+...|...+.--...+ - .+.+..+|++++...
T Consensus 150 -------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 150 -------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred -------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 1223334444444332100012334544443322211 1 234566777777753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 000951 662 FSPNNVMFTCLVDGLFKAGQSKAAMHISKIMDKE 695 (1211)
Q Consensus 662 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 695 (1211)
+.....|...+..+...|+.+.|..+++.++..
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 344566666677777777788888888777765
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=3.6e-08 Score=94.97 Aligned_cols=108 Identities=10% Similarity=-0.058 Sum_probs=93.7
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC
Q 000951 898 LKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGV 977 (1211)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 977 (1211)
.|+++++.. +.+...+..++..+...|++++|+..|+++++.+|. ++..|..++.+|...|++++|+..|+.....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 455555442 445667888999999999999999999999998876 9999999999999999999999999987766
Q ss_pred CCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 978 KLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 978 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.|+ ...++.++.+|...|++++|.+.+++..+
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 785 45889999999999999999999999876
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=7e-06 Score=96.11 Aligned_cols=385 Identities=7% Similarity=-0.092 Sum_probs=190.9
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHcCC-HHHHH
Q 000951 538 LG-DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETCKSGN-LWEAI 615 (1211)
Q Consensus 538 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 615 (1211)
.| +...|..+|+.++.. -|. ++++.+..+|++.+..- |+...|...+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366677777766642 232 78888888888887754 366777777777666653 34456
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 000951 616 VLLDEMVQF-NLL-PDRYTYTILLAGLC----RKGKVVSALLFFEKVVSKRTFSPN--NVMFTCLVDGLFKAGQSKAAMH 687 (1211)
Q Consensus 616 ~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 687 (1211)
.+|+..+.. |.. ++...|...+..+. .+|+.+.+..+|++++.. ++. ...|...... .+......+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 677766652 322 35566666665443 235667777777777762 221 1222222111 11111111211
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----hHHHHHHHH
Q 000951 688 ISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKK--D-----LLMCSMLLN 760 (1211)
Q Consensus 688 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~-----~~~A~~~~~ 760 (1211)
+.... .+.+..|..+++.+...-...+...|...+.--...+ - .+.+..+|+
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 11111 1123333433333321100012334444333221110 0 233455666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCC
Q 000951 761 TMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPD 840 (1211)
Q Consensus 761 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 840 (1211)
+++... ..+...|...+.-+...|+.++|..+|++++.. +.+...+.. |....+.++. ++.+.+
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~------ 267 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR------ 267 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH------
Confidence 665532 123445555555555566666666666666664 222222211 1111111111 111111
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC--C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP--K-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p--~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.+. .+.. ...+..+ + ...|...+....+.+..+.|..+|+++ ... +.+..+|...
T Consensus 268 ---------~~~----------~~~~-~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~ 325 (493)
T 2uy1_A 268 ---------KYS----------MGEA-ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC 325 (493)
T ss_dssp ---------HTC---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH
T ss_pred ---------HHH----------hhcc-chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH
Confidence 000 0000 0000001 1 144566666666677788888888888 321 2344455444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCC
Q 000951 918 VRGLAHCG-KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGD 996 (1211)
Q Consensus 918 ~~~~~~~g-~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 996 (1211)
+..-...+ +.+.|..+|+.+++..+. ++..|...+......|+.+.|..+|+... .....|...+..-...|+
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
Confidence 44444444 588888888888886543 56667777777778888888888887651 233455555555556688
Q ss_pred hhHHHHHHHHHHH
Q 000951 997 VMPAFELYEEMKH 1009 (1211)
Q Consensus 997 ~~~a~~~~~~~~~ 1009 (1211)
.+.+.++++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=1.7e-07 Score=92.38 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA 922 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1211)
|..++..+...|++++|+..|+++++ ..|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44444444455555555555555544 3332 2444455555555555555555555554432 333444555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCcccCHHHHHH--HHHHhhhhCCHHHHHHHHH
Q 000951 923 HCGKVEEAMLVLNRMLRMRLVPTIATFTT--LIHKFCKEAKFVDALKLKG 970 (1211)
Q Consensus 923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~--L~~~~~~~g~~~~A~~~~~ 970 (1211)
..|++++|+..|+++++..+. +...+.. ++..+...|++++|+..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 555555555555555554433 3333322 2222444455555555444
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=5e-07 Score=98.82 Aligned_cols=131 Identities=7% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCC---CCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCcc-c--CHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGI---SSS--DVAESAMVRGLAHCGKVEEAMLVLNRMLR---MRLV-P--TIA 947 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~---~~~~-p--~~~ 947 (1211)
+..++..+...|++++|+..|+++++... .+. ..+++.++.+|...|++++|+..|+++++ ..+. + ...
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 33455566666777777777777764311 111 33667777777778888888888777773 2211 1 125
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCC----Cc-hHHHHHHHHHHHhCCChhHH-HHHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKGTMELSGVK----LD-VVSYNVLISGLCANGDVMPA-FELYEEMKH 1009 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 1009 (1211)
++..+|.+|...|++++|+..++........ +. ...|+.++.+|...|++++| ...+++..+
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788888888888888888887755433111 11 34678888888888888888 666776543
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=2.9e-06 Score=91.93 Aligned_cols=195 Identities=9% Similarity=-0.065 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCc--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc-hhhHHHH
Q 000951 787 LEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGE--MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA-FQESHFV 863 (1211)
Q Consensus 787 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~eA~~~ 863 (1211)
+++++.+++.++..+ +-+..+|+....++...|. ++++++.++++++.. +.|...|+.-..++...|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555555432 1234444444444444442 455555555555433 2344455555555555554 3555555
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHHhc--------------CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc----
Q 000951 864 LRGMAEKGLTPK-CTQYITLINGMCRV--------------GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC---- 924 (1211)
Q Consensus 864 ~~~~~~~g~~p~-~~~~~~l~~~~~~~--------------g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 924 (1211)
+.++++ .+|. ..+|.....++.+. +.++++++++++++... |.|..+|+-+..++.+.
T Consensus 168 ~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcc
Confidence 555555 4443 24444444444433 34566666666666552 55555665444444433
Q ss_pred -------CCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh---hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951 925 -------GKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF---CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS 989 (1211)
Q Consensus 925 -------g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 989 (1211)
+.++++++.++++++..|. +..++.+++... ...|..++....+..+.+. +|--. -|..+.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence 4578889999999887755 444433333222 2357777888888777766 77444 4444444
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=3.5e-08 Score=107.06 Aligned_cols=92 Identities=7% Similarity=-0.089 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHH
Q 000951 809 FNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMC 887 (1211)
Q Consensus 809 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 887 (1211)
+..++..+...|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+++++ +.|+ ...+..++.++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3344444444444444444444444321 11344444444444444444444444444444 4443 244444555555
Q ss_pred hcCChhhHHHHHHHHH
Q 000951 888 RVGNFQGAFKLKDEME 903 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~ 903 (1211)
..|++++|...|++++
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555544
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=4.3e-08 Score=106.28 Aligned_cols=192 Identities=11% Similarity=-0.021 Sum_probs=132.8
Q ss_pred ChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951 840 DTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV 918 (1211)
Q Consensus 840 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~ 918 (1211)
+...+..++..+...|++++|+..|+++++ ..|+ ...|..++.++...|++++|+..++++++.. +.+..++..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 466788899999999999999999999999 7785 5889999999999999999999999998763 66778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChh
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVM 998 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 998 (1211)
.+|...|++++|+..|+++++.+|. +...+...+....+..+...... .......++......+...+ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999987654 32222222222221111111111 12222233444555555543 58889
Q ss_pred HHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchHHHHHHHHHH
Q 000951 999 PAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLVKGEILLKDI 1043 (1211)
Q Consensus 999 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~l 1043 (1211)
+|++.++...+ ..|+. .....+...+...++..++++.+|...
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988887754 46655 444444444444434344477777655
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1.5e-07 Score=88.53 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
...|..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..++++++.. +.+..++..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 33444455555555555555555555554 3442 2445555555555555555555555555432 334445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA 960 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g 960 (1211)
++...|++++|++.|+++++..+. +...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 555555555555555555554433 4444555555544443
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=5.7e-08 Score=92.95 Aligned_cols=102 Identities=12% Similarity=-0.065 Sum_probs=63.9
Q ss_pred CCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHH
Q 000951 872 LTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFT 950 (1211)
Q Consensus 872 ~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~ 950 (1211)
..|+. ..+..++..+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++.+|. ++..|.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 90 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPF 90 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHH
Confidence 44532 455566666666666666666666666552 445556666666666666666666666666666544 566666
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 951 TLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
.++.+|...|++++|+..|+.....
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666655443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=1.5e-07 Score=104.96 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----------------CTQYITLINGMCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 904 (1211)
...|..++..|.+.|++++|+..|+++++ +.|+ ..+|..++.++.+.|++++|+..|+++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666666666666666666666666 4443 36788999999999999999999999998
Q ss_pred cCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH-HHHHHH
Q 000951 905 LGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK-LKGTME 973 (1211)
Q Consensus 905 ~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~-~~~~~~ 973 (1211)
.. +.+..++..++.+|...|++++|+..|+++++.+|. +..++..++.++...|++++|.. .|+.|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 667888999999999999999999999999998876 88899999999999999999844 555443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=8.5e-08 Score=95.87 Aligned_cols=119 Identities=10% Similarity=0.082 Sum_probs=68.3
Q ss_pred hhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH-HHhcCCH--H
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG-LAHCGKV--E 928 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 928 (1211)
..|++++|+..+++.++ ..|+ ...+..++.++...|++++|...|+++++.. +.+..++..++.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566666666666665 4453 3556666666666666666666666665542 3445555566666 5566665 6
Q ss_pred HHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 929 EAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 929 eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666665544 5566666666666666666666666554444
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=9.3e-08 Score=95.59 Aligned_cols=125 Identities=9% Similarity=0.095 Sum_probs=105.1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH-hhhhCCH--
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK-FCKEAKF-- 962 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~-~~~~g~~-- 962 (1211)
+...|++++|+..++++++.. +.+..++..++.+|...|++++|+..|+++++.+|. +...|..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 346789999999999998773 667889999999999999999999999999998765 88899999999 8899998
Q ss_pred HHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 963 VDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 963 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
++|+..++..... .|+. ..+..++.+|...|++++|...+++..+ ..|+.
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence 9999999887766 7754 5889999999999999999999999877 34544
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=2.3e-07 Score=86.80 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
.+..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|...++++.+.. +.+..++..++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444444444444444444444444 3332 2444444555555555555555555554431 33344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCC
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAK 961 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~ 961 (1211)
...|++++|...|+++++..|. +...+..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555554433 44445555555544444
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=3.2e-07 Score=90.24 Aligned_cols=129 Identities=13% Similarity=0.017 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 457788899999999999999999998763 567888999999999999999999999999998765 888999999999
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCchH-HH--HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDVV-SY--NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
...|++++|+..|+..... .|+.. .+ ...+..+...|++++|.+.++...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999877765 66443 55 3344457788999999998877643
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=2.3e-07 Score=86.49 Aligned_cols=93 Identities=10% Similarity=0.122 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch--------HHHH
Q 000951 914 ESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV--------VSYN 985 (1211)
Q Consensus 914 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~ 985 (1211)
+..+|..+.+.|++++|++.|+++++.+|. ++.+|..++.+|...|++++|+..++..... .|+. .+|.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHH
Confidence 344455555555555555555555554433 4555555555555555555555554433322 2211 1344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH
Q 000951 986 VLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 986 ~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.++.+|...|++++|++.+++.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555555443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=3.8e-07 Score=85.04 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC------HHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT------IATFTTL 952 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~------~~~~~~L 952 (1211)
+..++..+.+.|++++|++.|+++++.. |.+..+|..++.+|...|++++|++.++++++.+|... ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444431 33344444444444444444444444444444332210 1244445
Q ss_pred HHHhhhhCCHHHHHHHHHHH
Q 000951 953 IHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~ 972 (1211)
|.++...|++++|++.|+..
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555554443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.2e-07 Score=84.07 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
.+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..+|..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34555555555566666666666555542 444555556666666666666666666666665544 5556666666666
Q ss_pred hhCCHHHHHHHHHHHHhc
Q 000951 958 KEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 958 ~~g~~~~A~~~~~~~~~~ 975 (1211)
..|++++|+..|+.....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666665544443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=5.4e-07 Score=83.40 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
.|..++..+...|++++|+..|+++++ ..|+ ..++..++.++...|++++|...|+++.+.. +.+..++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444444444444444444444 2232 2344444444444455555555444444331 23344444444455
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
...|++++|...|+++++..|. +...+..++.++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 5555555555555555444333 4444444444443
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=5.3e-07 Score=84.70 Aligned_cols=115 Identities=10% Similarity=-0.031 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 678888888888888899988888888653 556778888888888888888888888888887655 778888888888
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCC
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANG 995 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 995 (1211)
...|++++|+..|+..... .|+. ..+..++.++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 8888888888888776655 6644 46677777766554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.7e-07 Score=85.99 Aligned_cols=112 Identities=7% Similarity=-0.049 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHH
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVR 919 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~ 919 (1211)
...|..++..+.+.|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34566777777788888888888888877 6674 4778888888888888888888888888763 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcc----c-CHHHHHHHHHH
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLV----P-TIATFTTLIHK 955 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~----p-~~~~~~~L~~~ 955 (1211)
++...|++++|+..|+++++.+|. | +..++..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 888888888888888888887621 2 44555555443
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=5.8e-07 Score=84.03 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK 955 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~ 955 (1211)
...+..++..+...|++++|...|+++.+.. +.+..++..++.++...|++++|++.++++++..+. +..+|..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 3667888888889999999999999998763 556778888899999999999999999999887655 78888999999
Q ss_pred hhhhCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCCCh
Q 000951 956 FCKEAKFVDALKLKGTMELSGVKLD-VVSYNVLISGLCANGDV 997 (1211)
Q Consensus 956 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 997 (1211)
+...|++++|...++..... .|+ ...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 99999999999988876665 664 44777778788777765
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=4.3e-08 Score=100.13 Aligned_cols=147 Identities=8% Similarity=-0.053 Sum_probs=76.2
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-----------------h
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-----------------T 877 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-----------------~ 877 (1211)
.....|.+++|.+.|+...+.. ......+..++..+...|++++|+..|+++++ ..|+. .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHH
Confidence 3344455555555443221100 01233455556666666666666666666665 33321 4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
.+..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|++.|+++++..|. +..++..++.++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 55566666666666666666666666542 445556666666666666666666666666665544 5556666666666
Q ss_pred hhCCHHHHH
Q 000951 958 KEAKFVDAL 966 (1211)
Q Consensus 958 ~~g~~~~A~ 966 (1211)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 665555554
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=3.5e-07 Score=87.40 Aligned_cols=98 Identities=12% Similarity=-0.052 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHH
Q 000951 909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVL 987 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 987 (1211)
.+...+..++..+.+.|++++|+..|+++++.+|. ++..|..++.+|...|++++|+..|+..... .|+. ..+..+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 92 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHH
Confidence 34557788899999999999999999999998876 8999999999999999999999999987766 7854 588999
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 000951 988 ISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 988 ~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+.+|...|++++|.+.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.59 E-value=6.1e-08 Score=99.01 Aligned_cols=155 Identities=7% Similarity=-0.098 Sum_probs=107.0
Q ss_pred HHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---------------
Q 000951 848 IMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD--------------- 911 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~--------------- 911 (1211)
+......|.+++|.+.++...+ ..+. ...+..++..+...|++++|+..|+++++.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 3344455667777666654333 2222 3567888999999999999999999998753 2233
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951 912 -VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS 989 (1211)
Q Consensus 912 -~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 989 (1211)
.++..++.++...|++++|+..++++++..+. +..++..++.+|...|++++|+..|+..... .|+.. .+..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 67888999999999999999999999998765 8889999999999999999999998877666 77544 7777888
Q ss_pred HHHhCCChhHHH-HHHHHHH
Q 000951 990 GLCANGDVMPAF-ELYEEMK 1008 (1211)
Q Consensus 990 ~~~~~g~~~~a~-~~~~~~~ 1008 (1211)
++...++.+++. ..++.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 887777777766 4444443
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=3.5e-07 Score=93.66 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
++..++.++...|++++|...+++++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=4.9e-07 Score=92.49 Aligned_cols=154 Identities=8% Similarity=-0.036 Sum_probs=108.3
Q ss_pred hhcchhhHHHHHHHHHHcCCCC-C-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-CchHHHHHHHHHHHhcC
Q 000951 853 RIAAFQESHFVLRGMAEKGLTP-K-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GIS-SSDVAESAMVRGLAHCG 925 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g 925 (1211)
..|++++|...++.... .| . ..++..++..+...|++++|...++++++. +.+ ....++..++.++...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45666666664333322 23 2 366777777777788888888888777641 111 23446788999999999
Q ss_pred CHHHHHHHHHHHHhC---Cc-cc--CHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCC---CCc--hHHHHHHHHHHHhC
Q 000951 926 KVEEAMLVLNRMLRM---RL-VP--TIATFTTLIHKFCKEAKFVDALKLKGTMELSGV---KLD--VVSYNVLISGLCAN 994 (1211)
Q Consensus 926 ~~~eA~~~~~~~~~~---~~-~p--~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~ 994 (1211)
++++|++.++++++. .. .| ...++..++.++...|++++|+..++......- .|. ..++..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999999885 21 11 356789999999999999999998876553211 111 12457888899999
Q ss_pred CChhHHHHHHHHHHH
Q 000951 995 GDVMPAFELYEEMKH 1009 (1211)
Q Consensus 995 g~~~~a~~~~~~~~~ 1009 (1211)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988765
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=8.8e-07 Score=81.94 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK 955 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~ 955 (1211)
...+..++..+...|++++|.+.|+++.+.. +.+..++..++.++...|++++|+..++++++..+. +..+|..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3667788888888999999999999988763 556778888888888899999999999988887654 77888888888
Q ss_pred hhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhC
Q 000951 956 FCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCAN 994 (1211)
Q Consensus 956 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 994 (1211)
+...|++++|...++..... .|+. ..+..++.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc
Confidence 98899999998888876655 5644 3666666665543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.3e-06 Score=79.79 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
.+..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444444444555555555554444 3332 2444444445555555555555555554431 23344444455555
Q ss_pred HhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 922 AHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
...|++++|.+.|+++++.+|. +...+..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 5555555555555555544433 344444333
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=5.3e-07 Score=83.15 Aligned_cols=99 Identities=17% Similarity=0.029 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
.+..++..+...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++.+|. +..+|..|+.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 35556666667777777777777776652 456666777777777777777777777777776655 6667777777777
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCc
Q 000951 958 KEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 958 ~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
..|++++|+..++..... .|+
T Consensus 97 ~~g~~~~A~~~~~~al~~--~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS--QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHh--CcC
Confidence 777777777776655433 553
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=5.2e-07 Score=88.68 Aligned_cols=96 Identities=6% Similarity=-0.061 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
.|..++..|.+.|++++|+..|+++++ +.|+ ...|..++.++...|++++|+..|+++++.. +.+..+|..++.+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444444444444444444444444 3342 2444444444444444444444444444432 33344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 000951 922 AHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 922 ~~~g~~~eA~~~~~~~~~~~ 941 (1211)
...|++++|+..|+++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 44555555555555444443
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=2.4e-06 Score=101.71 Aligned_cols=171 Identities=8% Similarity=-0.034 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc----------hhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 000951 822 MGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAA----------FQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVG 890 (1211)
Q Consensus 822 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g 890 (1211)
.++|++.++++++.+ +.+...|+.-..++...|+ +++++..++++++ .+|+. .+|.....++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 346678888777643 2236667777777777777 8899999999998 77864 78888888888888
Q ss_pred --ChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhh--------
Q 000951 891 --NFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCG-KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKE-------- 959 (1211)
Q Consensus 891 --~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~-------- 959 (1211)
+++++++.++++++.. +.+..+|+..+.++.+.| .++++++.++++++.+|. |..+|+..+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7799999999999874 667888998898999999 899999999999998877 999999999988774
Q ss_pred ------CCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhCCChhH
Q 000951 960 ------AKFVDALKLKGTMELSGVKL-DVVSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 960 ------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 999 (1211)
+.+++|++.+...... .| |..+|+.+...+...++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5678898887766555 78 45589999998888887554
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=1.2e-06 Score=85.98 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..|+++++.++. +..+|..++.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 567778888888888888888888887763 556777888888888888888888888888887765 777888888888
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
...|++++|+..|+..... .|+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~--~p~~~ 113 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA--EGNGG 113 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HSSSC
T ss_pred HHccCHHHHHHHHHHHHHh--CCCch
Confidence 8888888888887766655 66544
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.9e-06 Score=82.64 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
..+..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..++++++.. +.+..++..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 3444444444444555555555554444 3343 2344444444445555555555555444431 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHH
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLI 953 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~ 953 (1211)
+.++...|++++|...|+++++..|. +..++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 44555555555555555555444333 333443333
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.48 E-value=1.4e-07 Score=110.12 Aligned_cols=147 Identities=7% Similarity=-0.119 Sum_probs=99.8
Q ss_pred cchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---------------hHHHHHHH
Q 000951 855 AAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---------------DVAESAMV 918 (1211)
Q Consensus 855 g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---------------~~~~~~l~ 918 (1211)
+++++|+..|+...+ ..|+. ..+..++..+.+.|++++|+..|+++++.. +.+ ..+|..++
T Consensus 248 ~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555555444 33432 556667777777777777777777776542 222 46777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCCh
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDV 997 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 997 (1211)
.+|.+.|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+..... .|+.. .+..++.++...|++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887765 7888888888888888888888887766554 77554 777777788877777
Q ss_pred hHHHH-HHHHH
Q 000951 998 MPAFE-LYEEM 1007 (1211)
Q Consensus 998 ~~a~~-~~~~~ 1007 (1211)
+++.+ .++.|
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 77653 34444
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=3e-07 Score=86.84 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh-------------hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC-------------TQYITLINGMCRVGNFQGAFKLKDEMEAL----- 905 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----- 905 (1211)
+...+..+.+.|++++|+..|+++++ +.|+. ..|..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34445555555666666666666555 44431 14444444444555555555544444432
Q ss_pred --CCCCchHHH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 906 --GISSSDVAE----SAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 906 --~~~~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
. +.+..+| +..+.++...|++++|+..|+++++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 2223333 44444444444444444444444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=2.5e-06 Score=77.90 Aligned_cols=109 Identities=14% Similarity=0.003 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++++..|. +..+|..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 456677777777888888888888877653 456667777777777788888888888887776654 677777778888
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS 989 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 989 (1211)
...|++++|...++..... .|+.. .+..++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 8888888888777665544 56443 4444443
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.44 E-value=8.4e-07 Score=83.79 Aligned_cols=97 Identities=8% Similarity=-0.006 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC------c-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISS------S-----DVAESAMVRGLAHCGKVEEAMLVLNRMLRM------ 940 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~------ 940 (1211)
.+...+..+...|++++|+..|+++++..... + ..+|..++.++.+.|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 45677778888888888888888888653220 1 226777777777777777777777777776
Q ss_pred -CcccCHHHH----HHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 941 -RLVPTIATF----TTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 941 -~~~p~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+|. +..+| ..+|.++...|++++|+..|+...+.
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 544 55666 67777777777777777766655443
No 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=2.7e-06 Score=101.28 Aligned_cols=170 Identities=9% Similarity=-0.005 Sum_probs=144.4
Q ss_pred chhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 000951 856 AFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGN----------FQGAFKLKDEMEALGISSSDVAESAMVRGLAHC 924 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~----------~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1211)
..++|+..++++++ ++|+. .+|.....++...|+ ++++++.++++++. .+.+..+|+.-+.++.+.
T Consensus 44 ~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Confidence 44688999999999 89975 788888888888888 99999999999987 488899999999999999
Q ss_pred C--CHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhC------
Q 000951 925 G--KVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA-KFVDALKLKGTMELSGVKL-DVVSYNVLISGLCAN------ 994 (1211)
Q Consensus 925 g--~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------ 994 (1211)
| ++++|+++++++++.++. |..+|+..+.++.+.| .++++++.+..+. ...| |..+|+..+.++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I--~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI--TRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT--TTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH--HHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 679999999999999887 9999999999999999 8999999976554 4488 455898888876653
Q ss_pred --------CChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccch
Q 000951 995 --------GDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNL 1033 (1211)
Q Consensus 995 --------g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~ 1033 (1211)
+.++++++.+++..+ +.|+. ..|......+...++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCcc
Confidence 567889999988876 57877 89999988887776633
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=2e-06 Score=81.26 Aligned_cols=96 Identities=9% Similarity=-0.072 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..++++++.+|. +..+|..++.+|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 455555555666666666666666655542 344555566666666666666666666666665544 555666666666
Q ss_pred hhhCCHHHHHHHHHHHHh
Q 000951 957 CKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~ 974 (1211)
...|++++|+..|+....
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666554443
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=1.4e-06 Score=85.47 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..|..++.++.+.|++++|+..++++++.. +.+..+|..++.+|...|++++|+..|+++++.+|.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 445555555555555555555555555542 344555555555555555555555555555555433
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=2e-06 Score=81.31 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=78.6
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAM 917 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l 917 (1211)
.+...|..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|...|+++++.. +.+..++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466777777777778888888888888777 5665 4677888888888888888888888887763 5567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
+.++...|++++|+..|+++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888876543
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=1.3e-06 Score=101.99 Aligned_cols=126 Identities=9% Similarity=0.003 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK----------------CTQYITLINGMCRVGNFQGAFKLKDEMEALG 906 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 906 (1211)
.|..++..|.+.|++++|+..|+++++ +.|+ ..+|..++.++.+.|++++|+..|+++++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444455555555555555555555554 3332 3678899999999999999999999999874
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHH-HHHHH
Q 000951 907 ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALK-LKGTM 972 (1211)
Q Consensus 907 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~-~~~~~ 972 (1211)
+.+..++..++.+|...|++++|+..|+++++.+|. +..++..++.++...|++++|.. .++.|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999998866 88899999999999999998876 34433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=2e-06 Score=80.32 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC-------HHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT-------IATFTT 951 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~-------~~~~~~ 951 (1211)
+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|+..++++++..+. + ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHH
Confidence 4444444444555555555555544432 333444444555555555555555555555544322 2 444555
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHh
Q 000951 952 LIHKFCKEAKFVDALKLKGTMEL 974 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~ 974 (1211)
++.++...|++++|...|+....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555544443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=1.3e-06 Score=80.54 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHH
Q 000951 842 NTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRG 920 (1211)
Q Consensus 842 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~ 920 (1211)
..+..++..+.+.|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3466677778888888888888888887 7775 4778888888888888888888888888763 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCcc
Q 000951 921 LAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
+...|++++|+..|+++++.+|.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 88888888888888888876643
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=4.4e-06 Score=77.91 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---hHHHHHHHH
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEALGISSS---DVAESAMVR 919 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~l~~ 919 (1211)
++..+...|++++|+..|+++++ ..|+. ..+..++.++...|++++|...|+++++.. +.+ ..++..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 33444444444444444444444 22321 234444444444444444444444444331 122 333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
++...|++++|+..|+++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 4444444444444444444433
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.9e-07 Score=107.75 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLA 922 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1211)
|..++..+.+.|++++|+..|+++++ ..|+ ..++..++.++...|++++|++.|+++++.. +.+..++..++.+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44455566778888888888888888 6775 4788889999999999999999999998873 566778889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH--hhhhCCHHHHHHHHH
Q 000951 923 HCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK--FCKEAKFVDALKLKG 970 (1211)
Q Consensus 923 ~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~--~~~~g~~~~A~~~~~ 970 (1211)
..|++++|++.|+++++..|. +..++..++.+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987765 66677777777 888899999999876
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=2.7e-06 Score=76.83 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-CHHHHHHHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-TIATFTTLIHK 955 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~ 955 (1211)
..+..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|++.|+++++..+.. +..+|..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 334444555555555555555555554432 3334445555555555555555555555555543210 34455555555
Q ss_pred hhhh-CCHHHHHHHHHHHHh
Q 000951 956 FCKE-AKFVDALKLKGTMEL 974 (1211)
Q Consensus 956 ~~~~-g~~~~A~~~~~~~~~ 974 (1211)
+... |++++|++.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555554443
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=8.3e-06 Score=78.08 Aligned_cols=110 Identities=10% Similarity=-0.010 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTT 951 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~ 951 (1211)
...+..++..+...|++++|...|+++++. .|+ ..++..++.++...|++++|+..++++++..+. +..+|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 467788888888899999999999988865 344 567888888888889999999999888887655 7788888
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH
Q 000951 952 LIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG 990 (1211)
Q Consensus 952 L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~ 990 (1211)
++.++...|++++|...|+..... .|+.. .+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 888888899999998888876665 67544 44444444
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=9.3e-07 Score=98.50 Aligned_cols=144 Identities=10% Similarity=-0.089 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH 923 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 923 (1211)
+..++..+.+.|++++|+..|+++++ ..|+... +...|+++++...+. ..+|..++.+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 44555556666666666666666665 4443321 112233333322211 1255666677777
Q ss_pred cCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH-HHhCCChhHHH
Q 000951 924 CGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG-LCANGDVMPAF 1001 (1211)
Q Consensus 924 ~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~-~~~~g~~~~a~ 1001 (1211)
.|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|+.... +.|+.. .+..+..+ ....+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776544 666777777777777777777777664433 356443 45555554 33445566666
Q ss_pred HHHHHHHH
Q 000951 1002 ELYEEMKH 1009 (1211)
Q Consensus 1002 ~~~~~~~~ 1009 (1211)
+.++.|.+
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 66666643
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=4.2e-06 Score=78.06 Aligned_cols=110 Identities=7% Similarity=0.061 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc--------hH
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD--------VV 982 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~ 982 (1211)
...+..++..+...|++++|+..|+++++..+. +..++..++.++...|++++|+..++..... .|+ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--ccccchhHHHHHH
Confidence 456788899999999999999999999998765 8899999999999999999999998877655 443 45
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 000951 983 SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNSTTYSVLIDA 1025 (1211)
Q Consensus 983 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 1025 (1211)
.+..++.+|...|++++|.+.+++..+. .|++..+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 7889999999999999999999998874 4556555555443
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=3.3e-06 Score=76.20 Aligned_cols=100 Identities=8% Similarity=-0.049 Sum_probs=88.1
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc---hHHH
Q 000951 908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD---VVSY 984 (1211)
Q Consensus 908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 984 (1211)
+.+...+..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|+..++..... .|+ ...+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 79 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVW 79 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHH
Confidence 345667888999999999999999999999998765 8889999999999999999999999877766 666 4488
Q ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHc
Q 000951 985 NVLISGLCAN-GDVMPAFELYEEMKHK 1010 (1211)
Q Consensus 985 ~~l~~~~~~~-g~~~~a~~~~~~~~~~ 1010 (1211)
..++.+|... |++++|.+.++...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 9999999999 9999999999998663
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=1.1e-06 Score=80.47 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=43.6
Q ss_pred cCChhhHHHHHHHHHHcC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHH
Q 000951 889 VGNFQGAFKLKDEMEALG--ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDAL 966 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~ 966 (1211)
.|++++|+..|+++++.+ .+.+..++..++.+|...|++++|+..|+++++.+|. ++.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 1223344555555555556666666666666555544 5555556666666666666666
Q ss_pred HHHHHHHh
Q 000951 967 KLKGTMEL 974 (1211)
Q Consensus 967 ~~~~~~~~ 974 (1211)
..++....
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=4.5e-06 Score=81.70 Aligned_cols=101 Identities=9% Similarity=-0.060 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc-------C----------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEAL-------G----------ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~----------~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
+...+..+.+.|++++|+..|+++++. . .+....+|..++.+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555555555555555555555433 0 12234577788888888888888888888888887
Q ss_pred cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 942 LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 942 ~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
|. ++.+|..+|.+|...|++++|+..|+..... .|+..
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 65 7888888888888888888888888876665 77654
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.2e-05 Score=93.59 Aligned_cols=166 Identities=5% Similarity=-0.099 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCcHHHHHHHHHHHHH----CCCCCC-hhh
Q 000951 774 CHSLILGFCETGMLEVGFKFLKKMIAEGT-MVD----CFTFNVLMRKCCEAGEMGKAFDLFNIMNM----LGVVPD-TNT 843 (1211)
Q Consensus 774 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~ 843 (1211)
+..++..|...|++++|.+++.++.+.-. .++ ..+.+.+...+...|++++|+++++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 44566677777777777777776654310 011 12333344455556677777777766542 111111 345
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHc--CCC--CC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCc--hH
Q 000951 844 QDAIIMGLKRIAAFQESHFVLRGMAEK--GLT--PK-CTQYITLINGMCRVGNFQGAFKLKDEMEAL----GISSS--DV 912 (1211)
Q Consensus 844 ~~~l~~~~~~~g~~~eA~~~~~~~~~~--g~~--p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~----~~~~~--~~ 912 (1211)
+..++..|...|++++|...+++++.. +.. |. ..++..++.+|...|++++|..+++++... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566677777777777777777766642 111 11 156666777777777777777777776532 11111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000951 913 AESAMVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 913 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
.+..++..+...|++++|...|.++++
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566666677777777776666654
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.9e-05 Score=91.74 Aligned_cols=165 Identities=8% Similarity=-0.025 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCC-hh
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPK-CT 877 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~-~~ 877 (1211)
.+..++..|...|++++|.+.++++...- ..++ ....+.+...+...|++++|+.++++.+. .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35678899999999999999999876411 0112 23445566667778999999999998875 233333 36
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCC---chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---ccc---CH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEAL--GISS---SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR---LVP---TI 946 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~---~~p---~~ 946 (1211)
++..++..+...|++++|..+++++... +..+ ...++..++.+|...|++++|..++++++... +.| -.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999998632 2111 23467788999999999999999999887632 111 23
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
..+..++..+...|++++|...|...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56777888888999999998876543
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=1.1e-05 Score=75.05 Aligned_cols=100 Identities=10% Similarity=-0.069 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC---HHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEMEALGISSSD---VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT---IATFTTL 952 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~---~~~~~~L 952 (1211)
+..++..+...|++++|...|+++++.. +.+. .++..++.++...|++++|+..|+++++..|. + +.++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4566777778888888888888887653 3333 46777788888888888888888888876654 4 5667778
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 953 IHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 953 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
+.++...|++++|+..|+..... .|+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 88888888888888887766655 56544
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=6.4e-07 Score=104.86 Aligned_cols=124 Identities=14% Similarity=0.012 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFC 957 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~ 957 (1211)
.+..++..+...|++++|++.|+++++.. +.+..++..++.+|.+.|++++|++.|+++++.+|. +..+|..++.+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34556667788999999999999999873 667889999999999999999999999999999876 8999999999999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHH--HHhCCChhHHHHHHH
Q 000951 958 KEAKFVDALKLKGTMELSGVKLDVV-SYNVLISG--LCANGDVMPAFELYE 1005 (1211)
Q Consensus 958 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~--~~~~g~~~~a~~~~~ 1005 (1211)
..|++++|++.|+...+. .|+.. .+..++.+ +...|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999887766 77544 67777766 888899999999988
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.27 E-value=1.7e-06 Score=79.28 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=66.3
Q ss_pred hcchhhHHHHHHHHHHcCC-CCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHH
Q 000951 854 IAAFQESHFVLRGMAEKGL-TPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAM 931 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 931 (1211)
.|++++|+..|+++++.+. .|+ ..++..++.++...|++++|+..|+++++.. +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5777888888888877221 354 3678888888888888888888888888763 556777888888888888888888
Q ss_pred HHHHHHHhCCcccCHH
Q 000951 932 LVLNRMLRMRLVPTIA 947 (1211)
Q Consensus 932 ~~~~~~~~~~~~p~~~ 947 (1211)
..|+++++..|. ++.
T Consensus 82 ~~~~~al~~~p~-~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSD-DET 96 (117)
T ss_dssp HHHHHHHHHHCC-CHH
T ss_pred HHHHHHHHhCCC-cHH
Confidence 888888886544 443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=4.7e-06 Score=93.80 Aligned_cols=88 Identities=6% Similarity=-0.183 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHH
Q 000951 911 DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLIS 989 (1211)
Q Consensus 911 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~ 989 (1211)
..+|..++.+|.+.|++++|++.++++++.++. +..+|..++.+|...|++++|+..|+..... .|+.. .+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 445666677777777777777777777776654 6667777777777777777777776655554 56433 5555555
Q ss_pred HHHhCCChhHHH
Q 000951 990 GLCANGDVMPAF 1001 (1211)
Q Consensus 990 ~~~~~g~~~~a~ 1001 (1211)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665555555544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=5.7e-06 Score=93.10 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK 955 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~ 955 (1211)
..+|..++.++.+.|++++|++.++++++.. +.+..++..++.+|...|++++|++.|+++++..|. +..++..++.+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3778899999999999999999999999763 567888999999999999999999999999998766 88899999999
Q ss_pred hhhhCCHHHHHHH
Q 000951 956 FCKEAKFVDALKL 968 (1211)
Q Consensus 956 ~~~~g~~~~A~~~ 968 (1211)
+...++.+++.+.
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888663
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=6.6e-06 Score=80.12 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC--C-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCc----cc-CHH
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALG--IS--S-SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRL----VP-TIA 947 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~----~p-~~~ 947 (1211)
++..++..+...|++++|...++++.+.. .. + ...++..++.++...|++++|.+.++++++... .+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44455555555555555555555554220 00 0 022344455555555555555555555543210 00 123
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLKGT 971 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~~~ 971 (1211)
++..++.++...|++++|...++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 444555555555555555555443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=3.2e-06 Score=94.17 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|+..|+++++. .|+.. .+...|+++++...+. ..+|..++.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34666777777888888888888887754 23222 1233444444443321 13889999999
Q ss_pred hhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcccchH
Q 000951 957 CKEAKFVDALKLKGTMELSGVKLDV-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS-TTYSVLIDAISKKENNLV 1034 (1211)
Q Consensus 957 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~ 1034 (1211)
.+.|++++|+..++..... .|+. ..|+.++.+|...|++++|.+.+++..+ +.|+. ..+..+...........+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877766 7854 4899999999999999999999999854 56766 666666655455555555
Q ss_pred HHHHHHHHHH
Q 000951 1035 KGEILLKDIQ 1044 (1211)
Q Consensus 1035 ~a~~~~~~l~ 1044 (1211)
++..+++.+.
T Consensus 317 ~a~~~~~~~l 326 (338)
T 2if4_A 317 KQKEMYKGIF 326 (338)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 5777776653
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=8e-06 Score=79.50 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCccc-----CH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGIS-SS----DVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVP-----TI 946 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p-----~~ 946 (1211)
.++..++..+...|++++|+..++++++.... ++ ..++..++.++...|++++|++.++++++..... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777777777777777777543110 11 2367788999999999999999999998753221 25
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhc----CCCCc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTMELS----GVKLD-VVSYNVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
.++..++.++...|++++|+..++..... +..+. ...+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67889999999999999999988765433 11122 23568888899999999999999988765
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=4e-06 Score=78.97 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=67.7
Q ss_pred HhhcchhhHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 000951 852 KRIAAFQESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEA 930 (1211)
Q Consensus 852 ~~~g~~~eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 930 (1211)
.+.+++++|+..++++++ .+|+ ...|..++.++...++++.+....+ .+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eA 65 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHH
Confidence 344556666666666665 5553 3555555555555555443332211 25688
Q ss_pred HHHHHHHHhCCcccCHHHHHHHHHHhhhhC-----------CHHHHHHHHHHHHhcCCCCchHHHHH
Q 000951 931 MLVLNRMLRMRLVPTIATFTTLIHKFCKEA-----------KFVDALKLKGTMELSGVKLDVVSYNV 986 (1211)
Q Consensus 931 ~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~ 986 (1211)
+..|+++++.+|. +..+|..+|.+|...| ++++|++.|+...+. +|+...|..
T Consensus 66 i~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 66 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8888888887766 7788888888888764 788888888876665 787665533
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=2.4e-05 Score=90.63 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=31.4
Q ss_pred HHhhcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 851 LKRIAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+..+|++++|+.++++.++ .-+.|++ .++..|+.+|..+|+|++|..++++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455666666666666664 1122321 556666677777777777776666654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=1e-05 Score=76.22 Aligned_cols=101 Identities=8% Similarity=-0.059 Sum_probs=68.9
Q ss_pred HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchh----------hHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 000951 816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQ----------ESHFVLRGMAEKGLTPKC-TQYITLIN 884 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------eA~~~~~~~~~~g~~p~~-~~~~~l~~ 884 (1211)
..+.+.+++|++.++++.+.. +.+...|..++.++...++++ +|+..|+++++ ++|+. .+|..++.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 456778999999999998855 346899999999999998865 67777777766 66653 56666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 885 GMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 885 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
+|...|.+ .|+.. ...|++++|++.|+++++.+|.
T Consensus 89 ay~~lg~l---------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 89 AYTSFAFL---------------TPDET---------EAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHH---------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhccc---------------Ccchh---------hhhccHHHHHHHHHHHHHhCCC
Confidence 66655421 11110 0124677777777777776543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=3e-05 Score=69.73 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC------HHHHH
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT------IATFT 950 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~------~~~~~ 950 (1211)
..+..++..+...|++++|++.|+++++.. +.+..++..++.++...|++++|++.|+++++..|. + ..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 344455555555555555555555555442 334455555555555555566666655555555433 3 44455
Q ss_pred HHHHHhhhhCCHHHHHH
Q 000951 951 TLIHKFCKEAKFVDALK 967 (1211)
Q Consensus 951 ~L~~~~~~~g~~~~A~~ 967 (1211)
.++.++...|++++|+.
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 55555555555555444
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=4.7e-05 Score=88.15 Aligned_cols=87 Identities=10% Similarity=-0.024 Sum_probs=47.7
Q ss_pred HhcCcHHHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH---cCCCC---Ch-hHHHHH
Q 000951 817 CEAGEMGKAFDLFNIMNM---LGVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE---KGLTP---KC-TQYITL 882 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~---~g~~p---~~-~~~~~l 882 (1211)
..+|++++|+.+++++++ .-+.++ ..++++|+.+|...|++++|+.+++++++ .-+.| +. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344555555555554432 111121 33556666666666666666666666553 11222 22 566777
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 000951 883 INGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 883 ~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+.+|..+|++++|..+|++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777766664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.00015 Score=68.14 Aligned_cols=109 Identities=11% Similarity=-0.120 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 000951 856 AFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAH----CGKVEEAM 931 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~ 931 (1211)
++++|+.+|++..+.| .| ... |+..|...+.+++|++.|+++.+.| +..++..++.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555433 11 111 4445545555555555555555432 34445555555554 45555555
Q ss_pred HHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhc
Q 000951 932 LVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVDALKLKGTMELS 975 (1211)
Q Consensus 932 ~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~ 975 (1211)
+.|+++.+.+ ++.++..|+.+|.. .+++++|...|+...+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555543 44455555555555 45555555555544443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=4e-05 Score=69.61 Aligned_cols=80 Identities=15% Similarity=0.009 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000951 859 ESHFVLRGMAEKGLTPK-CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRM 937 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 937 (1211)
+|+..|+++++ ..|+ ...+..++.++...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666655 5553 3556666666666666666666666666542 344555666666666666666666666666
Q ss_pred HhCC
Q 000951 938 LRMR 941 (1211)
Q Consensus 938 ~~~~ 941 (1211)
++..
T Consensus 80 l~~~ 83 (115)
T 2kat_A 80 LAAA 83 (115)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=3.2e-05 Score=69.52 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-------H
Q 000951 910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-------V 982 (1211)
Q Consensus 910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~ 982 (1211)
+...+..++..+...|++++|++.|+++++..|. ++.+|..++.++...|++++|+..++..... .|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567888999999999999999999999998766 8899999999999999999999998877655 7864 3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHH
Q 000951 983 SYNVLISGLCANGDVMPAFELYE 1005 (1211)
Q Consensus 983 ~~~~l~~~~~~~g~~~~a~~~~~ 1005 (1211)
.+..++.++...|+++.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 66777888888887777765543
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=0.00012 Score=62.79 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..++..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345555555555555555555555555442 334445555555566666666666666666555443 555555555555
Q ss_pred hhh
Q 000951 957 CKE 959 (1211)
Q Consensus 957 ~~~ 959 (1211)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=6.2e-05 Score=68.32 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 893 QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 893 ~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
++|+..|+++++.. +.+..++..++.++...|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45777788877653 556777888888888888888888888888887755 7778888888888888888888887765
Q ss_pred Hhc
Q 000951 973 ELS 975 (1211)
Q Consensus 973 ~~~ 975 (1211)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00022 Score=67.01 Aligned_cols=113 Identities=10% Similarity=-0.043 Sum_probs=96.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhh----hCCHHH
Q 000951 889 VGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCK----EAKFVD 964 (1211)
Q Consensus 889 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~----~g~~~~ 964 (1211)
.+++++|++.|+++.+.| .+... ++.+|...+..++|.+.|+++.+.+ ++.++..|+.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357899999999999887 33332 8888888888999999999999985 78899999999998 899999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCC
Q 000951 965 ALKLKGTMELSGVKLDVVSYNVLISGLCA----NGDVMPAFELYEEMKHKGL 1012 (1211)
Q Consensus 965 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~ 1012 (1211)
|...|+...+.+ +..+++.|+..|.. .+++++|.+.+++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998776653 56788999999998 8999999999999887653
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.0001 Score=63.28 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCch-HHHHHHH
Q 000951 910 SDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDV-VSYNVLI 988 (1211)
Q Consensus 910 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 988 (1211)
+...+..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|+..++..... .|+. ..+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 4567788899999999999999999999988765 7889999999999999999999998877665 6754 4777777
Q ss_pred HHHHhCC
Q 000951 989 SGLCANG 995 (1211)
Q Consensus 989 ~~~~~~g 995 (1211)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 7765543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00017 Score=63.32 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRM 940 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 940 (1211)
..+..++.++...|++++|+..|+++++.. +.+..+|..++.+|...|++++|++.|+++++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555555555555555555555442 333445555555555555555555555555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00023 Score=62.50 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
+.+..++..++.+|...|++++|+..|+++++.+|. +..+|..++.+|...|++++|+..|+.....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445667778888888888888888888888887765 6778888888888888888888887755543
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00032 Score=61.36 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCc
Q 000951 882 LINGMCRVGNFQGAFKLKDEMEALGISSSDV-AESAMVRGLAHCGKVEEAMLVLNRMLRMRL 942 (1211)
Q Consensus 882 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 942 (1211)
.+..+...|++++|+..|+++++.. +.+.. ++..++.++...|++++|++.|+++++.+|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3444445555555555555554432 33334 455555555555555555555555555443
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.002 Score=73.39 Aligned_cols=91 Identities=8% Similarity=-0.093 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-----Ccc-c-CHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcC-CCCchH-HH
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRM-----RLV-P-TIATFTTLIHKFCKEAKFVDALKLKGTME-----LSG-VKLDVV-SY 984 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~-----~~~-p-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~-~~p~~~-~~ 984 (1211)
..+.+.|++++|+.+++++++. ++. | ...++++|+.+|..+|+|++|+.+++... ..| ..|+.. ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455678888888888888763 211 1 24678889999999999999998877543 222 123433 67
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Q 000951 985 NVLISGLCANGDVMPAFELYEEMKH 1009 (1211)
Q Consensus 985 ~~l~~~~~~~g~~~~a~~~~~~~~~ 1009 (1211)
+.|+.+|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998765
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0055 Score=66.32 Aligned_cols=74 Identities=9% Similarity=-0.016 Sum_probs=41.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHH
Q 000951 908 SSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYN 985 (1211)
Q Consensus 908 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 985 (1211)
+.++.++..++..+...|++++|+..++++++.+ |+...|..++.++.-.|++++|.+.|+....+ +|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3444455555555555566666666666666654 45555556666666666666666665544433 55544443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.001 Score=75.55 Aligned_cols=86 Identities=8% Similarity=-0.033 Sum_probs=47.5
Q ss_pred hcchhhHHHHHHHHHH---cCCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC--CCchHHHHHHHH
Q 000951 854 IAAFQESHFVLRGMAE---KGLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEAL-----GI--SSSDVAESAMVR 919 (1211)
Q Consensus 854 ~g~~~eA~~~~~~~~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~~--~~~~~~~~~l~~ 919 (1211)
.|++++|+.++++.++ .-+.|++ .++..|+.+|..+|+|++|+.+++++++. |. +.....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566777777776664 2223332 56677777777777777777777766421 10 111223445555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 000951 920 GLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~ 939 (1211)
+|..+|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.041 Score=56.91 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=72.1
Q ss_pred chhhHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhc-CC
Q 000951 856 AFQESHFVLRGMAEKGLTPKC---TQYITLINGMCRV-----GNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHC-GK 926 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~-----g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 926 (1211)
...+|..+++++++ ++|+. ..|..++..|... |+.++|.++|+++++.+...+..++...++.+++. |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 35678888888888 88873 6788888888884 89999999999998874323477778888888874 88
Q ss_pred HHHHHHHHHHHHhCCcc--cCHHHHH
Q 000951 927 VEEAMLVLNRMLRMRLV--PTIATFT 950 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~--p~~~~~~ 950 (1211)
.++|.+.+++++..++. |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 99999999999988877 5544433
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.08 E-value=0.056 Score=55.90 Aligned_cols=85 Identities=12% Similarity=-0.000 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCccc-CHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhC-CCh
Q 000951 927 VEEAMLVLNRMLRMRLVP-TIATFTTLIHKFCK-----EAKFVDALKLKGTMELSGVKLD--VVSYNVLISGLCAN-GDV 997 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p-~~~~~~~L~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~ 997 (1211)
..+|...++++++.+|.- +..+|..||..|.. -|+.++|.+.|++..++ .|+ ..+++..+..|+.. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 678899999999987542 35789999999988 49999999999977766 884 56888888988874 999
Q ss_pred hHHHHHHHHHHHcCCc
Q 000951 998 MPAFELYEEMKHKGLC 1013 (1211)
Q Consensus 998 ~~a~~~~~~~~~~g~~ 1013 (1211)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999875444
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.0052 Score=66.53 Aligned_cols=67 Identities=12% Similarity=-0.043 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 875 KCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 875 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
+..+|..++..+...|++++|...+++++..+ |+...|..++.++.-.|++++|.+.|++++.++|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 45778777777777899999999999999875 67777888899999999999999999999998754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0039 Score=70.93 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=48.0
Q ss_pred HHhhcchhhHHHHHHHHHHc---CCCCCh----hHHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC--CCchHHHHH
Q 000951 851 LKRIAAFQESHFVLRGMAEK---GLTPKC----TQYITLINGMCRVGNFQGAFKLKDEMEAL-----GI--SSSDVAESA 916 (1211)
Q Consensus 851 ~~~~g~~~eA~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-----~~--~~~~~~~~~ 916 (1211)
+.++|++++|+.+++++++. -+.|++ .++..|+.+|..+|+|++|+.+++++++. |. +.....++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34556666666666666641 122322 55666666777777777777776666421 10 111223455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~ 939 (1211)
|+.+|...|++++|+.+|+++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.0035 Score=53.63 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCc
Q 000951 908 SSSDVAESAMVRGLAHCGK---VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLD 980 (1211)
Q Consensus 908 ~~~~~~~~~l~~~~~~~g~---~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 980 (1211)
++++.++..++.++...++ .++|..+++++++.+|. ++.++..+|..+.+.|++++|+..|+.+.+. .|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 4566667777766654433 67778888888777766 7777777777788888888888877776655 554
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0023 Score=72.62 Aligned_cols=85 Identities=5% Similarity=-0.074 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHHH---CCCCCC----hhhHHHHHHHHHhhcchhhHHHHHHHHHH-----cCC-CCCh-hHHHHHHHH
Q 000951 820 GEMGKAFDLFNIMNM---LGVVPD----TNTQDAIIMGLKRIAAFQESHFVLRGMAE-----KGL-TPKC-TQYITLING 885 (1211)
Q Consensus 820 g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~g~-~p~~-~~~~~l~~~ 885 (1211)
|++++|++++++.++ .-+.|+ ..++++|+.+|...|++++|+.+++++++ .|- .|+. .+++.|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555543 111222 34566666666666666666666666663 221 2332 778899999
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 000951 886 MCRVGNFQGAFKLKDEMEA 904 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~ 904 (1211)
|..+|++++|..+|+++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999888864
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.85 E-value=0.0042 Score=53.97 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCcccCHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 916 AMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIA-TFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 916 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~-~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
..+..+...|++++|+..|+++++..|. +.. +|..++.+|...|++++|+..|+..... .|+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH
Confidence 3567788999999999999999998766 788 9999999999999999999999877766 77554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.64 E-value=0.0095 Score=55.31 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCC--chHHHHHHHHHHHhcCCHHHHHHH
Q 000951 859 ESHFVLRGMAEKGLTPKCTQYITLINGMCRVG---NFQGAFKLKDEMEALGISS--SDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 859 eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
.+...|.+..+.|. ++..+...++.++.+.+ +.++|+.+++.+.+.. .| ....++.++.++.+.|++++|++.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444222 34455555555665555 3445666666655442 12 344555556666666666666666
Q ss_pred HHHHHhCCcc
Q 000951 934 LNRMLRMRLV 943 (1211)
Q Consensus 934 ~~~~~~~~~~ 943 (1211)
++++++..|.
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 6666665443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.49 E-value=0.01 Score=55.11 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhcCCCC-c-hHHHHHHHHHHHhCCChhHHH
Q 000951 927 VEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEA---KFVDALKLKGTMELSGVKL-D-VVSYNVLISGLCANGDVMPAF 1001 (1211)
Q Consensus 927 ~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~ 1001 (1211)
+..+.+.|++..+.++ ++..+...+++++.+.+ ++++|+.+++...... .| + ...++.++-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555544 36666666666666655 4456666666555441 14 2 235566666666666666666
Q ss_pred HHHHHHHHcCCccCh
Q 000951 1002 ELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 1002 ~~~~~~~~~g~~p~~ 1016 (1211)
+.++..++ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 66666655 45544
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.099 Score=65.84 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=25.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951 782 CETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM 832 (1211)
Q Consensus 782 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 832 (1211)
...|++++|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456666666554321 24455666666666666666666666554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.34 E-value=0.026 Score=49.43 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 880 ITLINGMCRVGNFQGAFKLKDEMEALG------ISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 880 ~~l~~~~~~~g~~~eA~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
..++..+...|+++.|...|+.+++.. -.+...++..++.++.+.|++++|+..++++++..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 344444444444444444444443210 01223344445555555555555555555555444
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.071 Score=67.16 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 000951 670 TCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKK 749 (1211)
Q Consensus 670 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 749 (1211)
..++..+.+.|.+++|.++.+ +.. .-.......|++++|.++.+.+ .+...|..|+..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555566666666665432 111 1122345567777777764432 2567778888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHH
Q 000951 750 KDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLF 829 (1211)
Q Consensus 750 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 829 (1211)
|+++.|.+.|.++.+ |..+...|...|+.+...++.+.+...| -++.-..+|.+.|++++|+++|
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 888888887777643 2234444555666666555555444432 1222233455566666666555
Q ss_pred HH
Q 000951 830 NI 831 (1211)
Q Consensus 830 ~~ 831 (1211)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.16 E-value=0.03 Score=49.04 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH
Q 000951 909 SSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR------LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV 982 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~------~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 982 (1211)
.+...+..||..+.+.|+++.|...|+++++.. ..+...++..|+.++.+.|++++|+..++..... .|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 355667889999999999999999999998742 1125678899999999999999999998876665 78654
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.92 E-value=0.04 Score=46.91 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 000951 892 FQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMR 941 (1211)
Q Consensus 892 ~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 941 (1211)
.++|..+++++++.. +.+..++..++..+...|++++|+..|+++++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555442 3344445555555555555555555555555544
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.44 Score=45.40 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=65.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 000951 711 FSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVG 790 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 790 (1211)
....|+++.|.++.+.+. +...|..|+......|+++-|.+.|.+..+ +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 446788888877766652 577788888888888888888888877653 22344455666777666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 000951 791 FKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIM 832 (1211)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 832 (1211)
.++-+.+...| -++.-..++.-.|++++++++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555555433 2344444566677777777777543
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.31 E-value=0.13 Score=45.89 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhh---HHHHHHHHHHcCCC-CchHHHHHHHHHHHhcCCHHHHHHH
Q 000951 858 QESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQG---AFKLKDEMEALGIS-SSDVAESAMVRGLAHCGKVEEAMLV 933 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~e---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~eA~~~ 933 (1211)
..+...|.+....|. |+..+-..++.++.+..+..+ ++.+++.+...+.+ ......+.++.++.+.|++++|++.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444332 455555666666666655544 66666665543211 1333445556666666666666666
Q ss_pred HHHHHhCCcc
Q 000951 934 LNRMLRMRLV 943 (1211)
Q Consensus 934 ~~~~~~~~~~ 943 (1211)
++.+++..|.
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 6666665543
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.81 E-value=0.45 Score=43.38 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=46.0
Q ss_pred hcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccC
Q 000951 888 RVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPT 945 (1211)
Q Consensus 888 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~ 945 (1211)
..++.++|.++|+.+++. .+.-..+|-..+.--.++|++..|.+++.+++.+++.|.
T Consensus 72 ei~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 447888999999998765 344477777777777889999999999999999988753
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.07 E-value=0.4 Score=42.70 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-cccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhc
Q 000951 909 SSDVAESAMVRGLAHCGKVEE---AMLVLNRMLRMR-LVPTIATFTTLIHKFCKEAKFVDALKLKGTMELS 975 (1211)
Q Consensus 909 ~~~~~~~~l~~~~~~~g~~~e---A~~~~~~~~~~~-~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 975 (1211)
++..+-..+++++.+..+..+ ++.+++.+++.+ |.-.......|+-++.+.|+|++|...++.+...
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444444544444332 555555544433 1112334444455555555555555554444433
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.04 E-value=15 Score=44.99 Aligned_cols=257 Identities=14% Similarity=0.078 Sum_probs=123.4
Q ss_pred HHHcCCCHHHHHHHHHHhhhCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 000951 569 GLCKGGNLKEAKRFLNSLHHIP--SAVDTVAYNTILAETCKSGNLWEAIVLLDEMVQFNL-------LPDRYTYTILLAG 639 (1211)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 639 (1211)
+....|+.+++..++...+..+ ..+....-..+.-+....|..+++...+...+...- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556677777777776655422 122233444455556666665677777766654321 0112222333334
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhc
Q 000951 640 LCRKGK-VVSALLFFEKVVSKRTFSPNN--VMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDG--FSRM 714 (1211)
Q Consensus 640 ~~~~g~-~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~ 714 (1211)
+.-.|. -+++.+.+..++... .+.. ..-.+|.-.+.-.|+.+....++..+.+. .+..+...+..+ +.-.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 443443 245666666666533 1111 12223344455667766666666666543 233333333333 3356
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 000951 715 GNMMMANDLLSTMRSRKLCPSL--ATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFK 792 (1211)
Q Consensus 715 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 792 (1211)
|+.+.+..+++.+... ..|.. ..-.+++-+|+..|+.....+++..+... ...+......+.-+....|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 7777777777777653 12211 11223455677777766555577776652 11122222222233334555555555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCcH-HHHHHHHHHHH
Q 000951 793 FLKKMIAEGTMVDCFTFNVLMRKCCEAGEM-GKAFDLFNIMN 833 (1211)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 833 (1211)
+++.+... ..|.......+.-+....|+. .++++.+..+.
T Consensus 616 lv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55444432 223222222222222223332 46666666665
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.04 E-value=0.62 Score=42.44 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHccCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChHHHHHHHHHHHHcC
Q 000951 735 SLATYNILLHGYSKKKDL------LMCSMLLNTMKMEGLLPDKL----TCHSLI---LGFCETGMLEVGFKFLKKMIAEG 801 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 801 (1211)
|..+|...+....+.|++ ++.+++|+++... ++|+.. .|..+- -.+...++.++|.++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 778888888777777887 7778888887774 555421 111111 1223447888888888888764
Q ss_pred CCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCC
Q 000951 802 TMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVP 839 (1211)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 839 (1211)
.+.=..+|.....--.++|++..|.+++.+++..+..|
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22124555556666667888888888888887766444
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.77 Score=43.72 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=23.9
Q ss_pred HhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951 817 CEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 817 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
..+|+++.|.++.+++ .+...|..|+.....+|+++-|+..|.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455555555554443 234455555555555555555555555543
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.34 E-value=0.4 Score=44.75 Aligned_cols=56 Identities=4% Similarity=0.020 Sum_probs=26.9
Q ss_pred HHHHHhhcchhhHHHHHHHHHHc-CCCCCh-------hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 848 IMGLKRIAAFQESHFVLRGMAEK-GLTPKC-------TQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 848 ~~~~~~~g~~~eA~~~~~~~~~~-g~~p~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+..+...|.++.|+.+.+.++.. +.+|+. .++..+++++...|++..|...|++++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555555555555554431 112221 244455555555555555555555553
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.51 E-value=13 Score=39.59 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=42.1
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV 918 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~ 918 (1211)
-|+.....++..|.+.+++.+|...|- .|.++....+..++.-+...+...++--+.- ..+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfia---------------RaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYCA---------------RAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHHH---------------HHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHHH---------------HHH
Confidence 356666677777777777777776662 1333333445444444433332222222211 223
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 000951 919 RGLAHCGKVEEAMLVLNRML 938 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~ 938 (1211)
-.|.-.++...|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34556677777777655544
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.64 E-value=31 Score=42.29 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 000951 353 YGALLNGFCKHAKFDLARSLLERMRT 378 (1211)
Q Consensus 353 ~~~ll~~~~~~g~~~~a~~l~~~~~~ 378 (1211)
|..+++...+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566666677777777777777664
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.60 E-value=0.00041 Score=75.83 Aligned_cols=203 Identities=10% Similarity=0.067 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 000951 736 LATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRK 815 (1211)
Q Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 815 (1211)
+..|..|+.++...+...+|++.|-++. |+..|..++.+..+.|.+++-++++..+.+. ..++.+-+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 3345555555555555555544432111 2233444445555555555555555444432 2233344455555
Q ss_pred HHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH-------------------cCCC-CC
Q 000951 816 CCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE-------------------KGLT-PK 875 (1211)
Q Consensus 816 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-------------------~g~~-p~ 875 (1211)
|++.+++.+-.+.. -.|+..-....++-|...|.++.|..+|..+.. ...+ -+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555544432221 124444444455555555555555544443221 0011 12
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHH
Q 000951 876 CTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHK 955 (1211)
Q Consensus 876 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~ 955 (1211)
..+|-.+..+|...+.+.-|...--.++-+. ..+..++..|...|.++|-+.+++..+...- ....++.-|+-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglEr-AHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-hhHHHHHHHHHH
Confidence 3456666666666666555544433333111 1112234455666666666666666654321 244555555555
Q ss_pred hhhh
Q 000951 956 FCKE 959 (1211)
Q Consensus 956 ~~~~ 959 (1211)
|.+-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 5543
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.44 E-value=1.1 Score=41.80 Aligned_cols=134 Identities=10% Similarity=-0.013 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCC-CCCCh-------hhHHHHHHHHHhhcchhhHHHHHHHHHHcC-CCCCh-h
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLG-VVPDT-------NTQDAIIMGLKRIAAFQESHFVLRGMAEKG-LTPKC-T 877 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g-~~p~~-~ 877 (1211)
++..-+..+...|.|+.|+-+.+.+.... ..|+. .++..+++++...+++..|...|+++++.. .-|.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445567778888888888877654311 12331 255677888888888888888888887521 11211 1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 878 QYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 878 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
++..+...-...+ ......+.+.-+.++.+|.+.|++++|+.+++.+-... -++.+-..|+..|
T Consensus 102 ~~~~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred ccccccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence 1111110000000 01123344555667777777777888777765532110 1555555666554
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.39 E-value=13 Score=41.87 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 644 GKVVSALLFFEKVVSKR----TFSPNNVMFTCLVDGLFKAGQSKAAMHISKIMD 693 (1211)
Q Consensus 644 g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 693 (1211)
|++++|++.+..+.+.. ...........++..|...|+|+...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66777776665544321 122234556667777777777777666555543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.38 E-value=12 Score=42.33 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH--CCCCCC---hhhHHHHHHHHHhhcchhhHHHHHHHHHH----cCCCCCh--hH
Q 000951 810 NVLMRKCCEAGEMGKAFDLFNIMNM--LGVVPD---TNTQDAIIMGLKRIAAFQESHFVLRGMAE----KGLTPKC--TQ 878 (1211)
Q Consensus 810 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~g~~p~~--~~ 878 (1211)
..|...|...|++.+|.++++.+.. .+..+. ...+...+..|...+++.+|...++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888777777653 121111 34555666677777777777777777542 1112222 44
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 879 YITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 879 ~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
+...+..+.+.++|.+|...|..+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566677777788888877777774
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.76 E-value=1.8 Score=38.67 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhhCCHHHHHHHH
Q 000951 948 TFTTLIHKFCKEAKFVDALKLK 969 (1211)
Q Consensus 948 ~~~~L~~~~~~~g~~~~A~~~~ 969 (1211)
.+..|+-++.+.|+|++|....
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333444444444444444443
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.30 E-value=0.00029 Score=76.93 Aligned_cols=264 Identities=13% Similarity=0.095 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 000951 666 NVMFTCLVDGLFKAGQSKAAMHISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHG 745 (1211)
Q Consensus 666 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 745 (1211)
...|..|..+....++..+|++.|- + ..|+..|..++....+.|++++-...+...++..- ++..=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 3467888888888888877765442 2 23556677888888888999888888887776533 33334577888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHH
Q 000951 746 YSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKA 825 (1211)
Q Consensus 746 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 825 (1211)
|.+.++..+-.++. ..|+..-....+.-|...|.++.|.-+|..+- -|..|..++.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHH
Confidence 88888765433322 23666666778888888888888877775432 344566677888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 826 FDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
.+.-+++ .++-||-.+-.+|...+.+.-|-..--.++ +.||. ...++.-|...|.++|-+.+++..+..
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 8765443 467899999999999999988877766655 44543 234566788999999999999999743
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 000951 906 GISSSDVAESAMVRGLAHCGKVEEAMLVLNRML-RMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME 973 (1211)
Q Consensus 906 ~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~-~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 973 (1211)
-......+.-|+-.|++-. .++-.+.++... +.+++ .++.+|-+..-|.|+.-+|....
T Consensus 259 -ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHHHT
T ss_pred -CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhcch
Confidence 2456778899998887753 444444433221 12221 35778888888999888876543
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.07 E-value=4.9 Score=36.40 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 874 PKCTQYITLINGMCRVGNF---QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 874 p~~~~~~~l~~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
|...+-...+.++.+..+. .+++.+++.+...+......-.+.++.++.+.|++++|++..+.+++..|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4445555555555555433 345555555554322223334455555666666666666666666665543
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.01 E-value=3.4 Score=37.45 Aligned_cols=69 Identities=13% Similarity=-0.012 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhcCCCCc-h-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 944 PTIATFTTLIHKFCKEAK---FVDALKLKGTMELSGVKLD-V-VSYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 944 p~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
|+..+-..+++++.+..+ ..+++.+++.+... .|+ . ...+.|+-++.+.|++++|.+..+.+++ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 455566666666655543 33455555544433 342 2 2445555566666666666666666655 45544
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.49 E-value=2.9 Score=37.37 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=53.2
Q ss_pred CCCChhHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 872 LTPKCTQYITLINGMCRVGNF---QGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 872 ~~p~~~~~~~l~~~~~~~g~~---~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
-.|...+-...+.++.+..+. .+++.+++.+.+.+.......++.++.++.+.|++++|++..+.+++..|.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 445667777778888777654 468888888876542234556777888889999999999999999887755
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.31 E-value=11 Score=33.48 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 391 VIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLCKMYRDG 450 (1211)
Q Consensus 391 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 450 (1211)
-++.+...|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344444445555544554443221 23444444444455555555555555555554444
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.21 E-value=28 Score=36.64 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=52.2
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHcC
Q 000951 498 ASLCKGGKVCEAEDYVGHMKRIGVVPNSITFDCMIDGYGTLGDGLKAFSM----FDEMVKLGHHPSIFTYGSLLKGLCKG 573 (1211)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~ 573 (1211)
.-|.+.+++++|++++..-. ..+.+.|+...|.++ .+-..+.+.+++......++..+...
T Consensus 41 ~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34556666666666543322 123344555444443 23333445666666666555555442
Q ss_pred CCHH-HHHHHHHHhh----hCC--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000951 574 GNLK-EAKRFLNSLH----HIP--SAVDTVAYNTILAETCKSGNLWEAIVLLD 619 (1211)
Q Consensus 574 g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 619 (1211)
...+ .=..+++.++ +.+ +.-++.....+...|.+.|++.+|...|-
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2111 0111222221 221 22366677777777777777777766553
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.70 E-value=36 Score=37.29 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 000951 737 ATYNILLHGYSKKKDLLMCSMLLNTM 762 (1211)
Q Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (1211)
.+...|+..|.+.|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666666666655555544
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.34 E-value=3 Score=50.10 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 000951 918 VRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTM 972 (1211)
Q Consensus 918 ~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 972 (1211)
++-+...|+++-|+++.++++..-|. +..+|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556678888888888888887655 7888888888888888888888776654
No 250
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.26 E-value=18 Score=32.28 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 000951 704 FNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLL 768 (1211)
Q Consensus 704 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 768 (1211)
....++.+..+|+-++-.++...+.. +.+|++.....+..+|.+-|+..+|.+++.++-+.|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555566666666666666432 23445666666666666666666666666666666654
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.77 E-value=2 Score=51.69 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGM 867 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 867 (1211)
-+...|+++-|+++-+++.... +.+..+|..|+.+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445667777777776666532 233666777777777777777777666664
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.71 E-value=40 Score=35.78 Aligned_cols=80 Identities=6% Similarity=0.029 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMR 814 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 814 (1211)
|+..+..++..|.+.+++.+|...|- . |-.+....+..++.-+...+...+ .|.++..+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-
Confidence 78888888899999999988887772 1 333333455444443333332111 1222223333
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 000951 815 KCCEAGEMGKAFDLFNIMN 833 (1211)
Q Consensus 815 ~~~~~g~~~~A~~~~~~~~ 833 (1211)
.|.-.++...|..+|+...
T Consensus 196 ~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3566778888888776654
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.24 E-value=3.9 Score=45.38 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHH-----hcCCCCchH
Q 000951 917 MVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTME-----LSGVKLDVV 982 (1211)
Q Consensus 917 l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~ 982 (1211)
++..+...|++++|+..++.++...|- +...|..|+.+|...|+..+|+..|+... ++|++|...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 444555566666666666665555433 55566666666666666666666555432 345555443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.77 E-value=60 Score=35.52 Aligned_cols=62 Identities=11% Similarity=-0.066 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHH--HH--HHHH-hCCChHHHHHHHHHHHH
Q 000951 597 AYNTILAETCKSGNLWEAIVLLDEMVQF--NLLPDRYTYTI--LL--AGLC-RKGKVVSALLFFEKVVS 658 (1211)
Q Consensus 597 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~--li--~~~~-~~g~~~~A~~~~~~~~~ 658 (1211)
++..-+..|...+++.++...+...... .+.+++..-.. .. -.+. ..+++.+|...|-+..+
T Consensus 141 v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 4444455555666666666665554431 11122222111 11 1234 56666666666655543
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.35 E-value=53 Score=34.57 Aligned_cols=80 Identities=8% Similarity=-0.063 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHH
Q 000951 735 SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLPDKLTCHSLILGFCET---GMLEVGFKFLKKMIAEGTMVDCFTFNV 811 (1211)
Q Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 811 (1211)
++..+..++..|.+.|++.+|...|-. |-.-|...+..++.-+... |...++--+ +..+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHHH
Confidence 788888888999999998888877641 1111334444444333333 433332221 2222
Q ss_pred HHHHHHhcCcHHHHHHHHHHHH
Q 000951 812 LMRKCCEAGEMGKAFDLFNIMN 833 (1211)
Q Consensus 812 l~~~~~~~g~~~~A~~~~~~~~ 833 (1211)
++ .|.-.|+...|..+|+...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 3556788888888887664
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.26 E-value=27 Score=45.06 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchhhHHHHHHHHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMA 868 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 868 (1211)
....++..+...+.++-+.++..-. +.++..-..++.+|...|++++|...|.++.
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3445666777888888877654332 3455666778888999999999999998864
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.40 E-value=17 Score=46.99 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=101.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCcHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 000951 776 SLILGFCETGMLEVGFKFLKKMIAEGTMVDCFTFNVLMRKCCEAGEMGKAFDLFNIMNMLGVVPDTNTQDAIIMGLKRIA 855 (1211)
Q Consensus 776 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 855 (1211)
.++..+...+.++-+.++..- .+.++.....++.+|..+|++++|.+.|+++.. ++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-----------
Confidence 466677888888887765543 344555556678899999999999999988742 222221100
Q ss_pred chhhHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch----HHHHHHHHHHHhcCCHHH
Q 000951 856 AFQESHFVLRGMAEKGL--TPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD----VAESAMVRGLAHCGKVEE 929 (1211)
Q Consensus 856 ~~~eA~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~e 929 (1211)
....-+..+..... ..-..-|..++..+.+.|.++.+++.-..+++...+.+. ..|..+...+...|++++
T Consensus 880 ---~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 880 ---AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp ---SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred ---hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 00001112222111 111245667777888888888888888888754322222 256777788888899999
Q ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCH
Q 000951 930 AMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKF 962 (1211)
Q Consensus 930 A~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~ 962 (1211)
|...+-.+-.... -......|...++..|..
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 9888765543321 345666677766666553
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.07 E-value=27 Score=35.57 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=37.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcc
Q 000951 886 MCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLV 943 (1211)
Q Consensus 886 ~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 943 (1211)
..+.|++++|++.....++. .|.|...-..++..++-.|++++|.+-++...+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34566666666666666654 2555666666677777777777777777777766544
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.59 E-value=13 Score=41.07 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=45.6
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCCchH
Q 000951 846 AIIMGLKRIAAFQESHFVLRGMAEKGLTP-KCTQYITLINGMCRVGNFQGAFKLKDEME-----ALGISSSDV 912 (1211)
Q Consensus 846 ~l~~~~~~~g~~~eA~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~-----~~~~~~~~~ 912 (1211)
.++..+...|++.+|+..+..++. ..| +...+..++.++...|+..+|++.|++.. +.|++|.+.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 355566677777777777777776 667 44677777778888888888887777763 346666654
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.93 E-value=66 Score=32.76 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=76.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhH
Q 000951 920 GLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMP 999 (1211)
Q Consensus 920 ~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 999 (1211)
.+.+.|.+++|+...+..++..|. |...-..|...+|-.|+|+.|.+-++....+ +|+......+... .-.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~------lI~ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRH------LVK 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH------HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHH------HHH
Confidence 456889999999999999998877 8988889999999999999999988877776 7765433222111 123
Q ss_pred HHHHHHHHHHcCCcc----ChhhHHHHHHH---HHhcccchHHHHHHHHHH
Q 000951 1000 AFELYEEMKHKGLCP----NSTTYSVLIDA---ISKKENNLVKGEILLKDI 1043 (1211)
Q Consensus 1000 a~~~~~~~~~~g~~p----~~~~~~~l~~~---~~~~~~~~~~a~~~~~~l 1043 (1211)
|...+..+..-+-.| ++..|....-. ....|+.++ |..+..+.
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~-A~~lr~~A 126 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ-VSELALQI 126 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHH-HHHHHHHH
Confidence 455566665544444 33345444333 233466666 55555554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.58 E-value=20 Score=40.28 Aligned_cols=61 Identities=7% Similarity=-0.099 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChhhHHHHHHHHH
Q 000951 843 TQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKC--TQYITLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 843 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
++..++..|.+.|++++|...|.++......+.. ..+..++..+...++|..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555556666666666666665553333332 556666666666677777766666664
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.40 E-value=19 Score=40.44 Aligned_cols=96 Identities=14% Similarity=-0.111 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhhcchhhHHHHHHHHHH---cCCCCChh--HHH
Q 000951 808 TFNVLMRKCCEAGEMGKAFDLFNIMNML--GVVPDTNTQDAIIMGLKRIAAFQESHFVLRGMAE---KGLTPKCT--QYI 880 (1211)
Q Consensus 808 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~---~g~~p~~~--~~~ 880 (1211)
+...++..|.+.|++++|.+.|.++... +...-...+...+..+...+++..+...+.++.. .+-+|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3344555555555555555555555431 1112234455555555555555555555555442 12222221 111
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 000951 881 TLINGMCRVGNFQGAFKLKDEME 903 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~ 903 (1211)
.-+..+...++|.+|...|-.+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 22233445677777777776664
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.02 E-value=29 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=23.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 000951 255 LCRNNRSAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLN 310 (1211)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 310 (1211)
+...|+|++|..+.+.+ +.||...|-.|-. .+.|.-+.+...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44455555554443332 2455555544432 24555555555555554444
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.83 E-value=43 Score=27.93 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000951 261 SAKGYLLLKNMRKRMITPNEVTYNTLINGFVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAM 340 (1211)
Q Consensus 261 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 340 (1211)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++...+.+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 3444444444444333 22222222345667888888888776654 6888888877665 77777777777777
Q ss_pred HHHCCCCcCHhHH
Q 000951 341 MEEMGLRPNEVSY 353 (1211)
Q Consensus 341 m~~~g~~p~~~t~ 353 (1211)
+...| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 77666 3433333
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.67 E-value=2e+02 Score=33.68 Aligned_cols=462 Identities=8% Similarity=-0.068 Sum_probs=225.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 000951 527 TFDCMIDGYGTLGDGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHHIPSAVDTVAYNTILAETC 606 (1211)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 606 (1211)
.|.....++ +.|++..+..+...+....+. .-..|..+...+ .....++...++...... +.....-+..+..+.
T Consensus 9 ~~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQAW-DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHH
Confidence 344444443 467777777666555322221 112333333222 122455555555543221 112334455556666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000951 607 KSGNLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLVDGLFKAGQSKAAM 686 (1211)
Q Consensus 607 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 686 (1211)
+.+++...+..+.. .+.+...-.....+....|+..+|......+-..+...|+. ...++..+.+.|
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~g------ 150 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASG------ 150 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTT------
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHCC------
Confidence 77777666554332 12344444455666777888888877777777766444442 333333333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHC
Q 000951 687 HISKIMDKEGVYPDTIAFNAVMDGFSRMGNMMMANDLLSTMRSRKLCPSLAT-YNILLHGYSKKKDLLMCSMLLNTMKME 765 (1211)
Q Consensus 687 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 765 (1211)
.-....++.-+ ......|+...|..+...+ .++... ...++..+.. +..+..... .
T Consensus 151 ----------~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~---~- 207 (618)
T 1qsa_A 151 ----------KQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFAR---T- 207 (618)
T ss_dssp ----------CSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHH---H-
T ss_pred ----------CCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHh---c-
Confidence 22222233322 3445567777776665533 233322 2233333322 222222211 1
Q ss_pred CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh----HHHHHHHHHhcCcHHHHHHHHHHHHHCCCC
Q 000951 766 GLLPDKLT---CHSLILGFCETGMLEVGFKFLKKMIAEGTMVDCFT----FNVLMRKCCEAGEMGKAFDLFNIMNMLGVV 838 (1211)
Q Consensus 766 g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 838 (1211)
..|+... +...+.-+.+ .+.+.|...+....+.. ..+... ...++..+...+...++...+.......
T Consensus 208 -~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-- 282 (618)
T 1qsa_A 208 -TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (618)
T ss_dssp -SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred -cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--
Confidence 1233221 1112222333 47789999998876542 222222 2222323333443567777777765533
Q ss_pred CChhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHH
Q 000951 839 PDTNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMV 918 (1211)
Q Consensus 839 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~ 918 (1211)
.+.....-.+..-.+.|+++.|...|+.|..... .......-++.++...|+.++|..+|+.+... . ..|..++
T Consensus 283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA 356 (618)
T 1qsa_A 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA 356 (618)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH
Confidence 2322222233333467999999999988764111 13455677888888999999999999998742 1 2233332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCccc-CH---HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhC
Q 000951 919 RGLAHCGKVEEAMLVLNRMLRMRLVP-TI---ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCAN 994 (1211)
Q Consensus 919 ~~~~~~g~~~eA~~~~~~~~~~~~~p-~~---~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 994 (1211)
..+.|..-. ... ......+ .. ..-...+..+...|...+|...+...... .+......++......
T Consensus 357 --a~~Lg~~~~-~~~----~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~ 426 (618)
T 1qsa_A 357 --AQRIGEEYE-LKI----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNN 426 (618)
T ss_dssp --HHHTTCCCC-CCC----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHT
T ss_pred --HHHcCCCCC-CCC----CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Confidence 222332100 000 0000000 00 01123455677889999998877665432 2333334555555677
Q ss_pred CChhHHHHHHHHHHHcCCc--cChhhHHHHHHHHHhcccchHHHHHHHHHHHHcCCccc
Q 000951 995 GDVMPAFELYEEMKHKGLC--PNSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISW 1051 (1211)
Q Consensus 995 g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 1051 (1211)
|.++.++.........+.. .-|..+...+....+.-+++. ...+--...|.+|.|.
T Consensus 427 ~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~-~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 427 QWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQ-SYAMAIARQESAWNPK 484 (618)
T ss_dssp TCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCH-HHHHHHHHHHHTTCTT
T ss_pred CChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCH-HHHHHHHHHhCCCCCC
Confidence 8888777655433221110 011233344444444444443 2111123467777765
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.45 E-value=29 Score=28.92 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 000951 365 KFDLARSLLERMRTNGISISCIAYTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGMTRKAKAVLC 444 (1211)
Q Consensus 365 ~~~~a~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 444 (1211)
.-++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|.+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555555442 22222333455667788888887766553 678888877654 36788888887777
Q ss_pred HHHHCCCCCCHHHH
Q 000951 445 KMYRDGLVPNKIIY 458 (1211)
Q Consensus 445 ~m~~~g~~p~~~~~ 458 (1211)
++..+| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 777776 4444444
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.42 E-value=2.1e+02 Score=33.49 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHhcCChHHHHHHHHHHH
Q 000951 711 FSRMGNMMMANDLLSTMR 728 (1211)
Q Consensus 711 ~~~~g~~~~A~~~~~~~~ 728 (1211)
+.+.|+.++|..+|..+.
T Consensus 329 ~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 329 LLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 334455555555555444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.86 E-value=41 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=24.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 000951 290 FVKEGKIQVASRVFDEMSMLNFSPNSITYNELIDGHCCKGNFKEAFRLLAMMEEMG 345 (1211)
Q Consensus 290 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 345 (1211)
+...|++++|..+.+.+. .||...|-+|-.. +.|..+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 344555555554444332 4555555554433 4455555555554444444
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=58.21 E-value=58 Score=27.39 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 000951 540 DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH 588 (1211)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (1211)
+..+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++.+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666666666777777777777777777777777777776654
No 270
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=56.33 E-value=40 Score=28.29 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 000951 122 EYALETFQLMGFRGFNPSVYTCNMMLSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILIN 183 (1211)
Q Consensus 122 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 183 (1211)
-+..+.++.+....+.|+.....+.|++|-|.+++..|.++|+-+... +.+....|..++.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 355556666677778899999999999999999999999999987643 3344445766664
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.47 E-value=33 Score=34.41 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCC
Q 000951 186 CVEGKLKKAGYLLRKMEESGYV 207 (1211)
Q Consensus 186 ~~~g~~~~A~~~~~~m~~~g~~ 207 (1211)
++.|+.+-...+++.+.+.|..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 4445544444444444444433
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.29 E-value=76 Score=30.68 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 000951 717 MMMANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP 769 (1211)
Q Consensus 717 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 769 (1211)
..++..+|..|...++-- -..-|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555444433 23344444445555555555555555555544444
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=50.89 E-value=43 Score=34.47 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCc
Q 000951 328 KGNFKEAFRLLAMMEEMGLRP 348 (1211)
Q Consensus 328 ~g~~~~A~~~~~~m~~~g~~p 348 (1211)
.|......++++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 333333334444444444443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.15 E-value=60 Score=31.39 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCCCC
Q 000951 821 EMGKAFDLFNIMNMLGVVPD-TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGLTP 874 (1211)
Q Consensus 821 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~~p 874 (1211)
+..++.++|..|...++-.. ..-|..-+..+...|++.+|..+|+..++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566666666655444333 3334444455555555666666666555555555
No 275
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=49.00 E-value=1.2e+02 Score=29.11 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=41.5
Q ss_pred HHHHHHHHH---hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChh-----hHHHHHHHHHHcCCCCchH
Q 000951 844 QDAIIMGLK---RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGNFQ-----GAFKLKDEMEALGISSSDV 912 (1211)
Q Consensus 844 ~~~l~~~~~---~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~-----eA~~~~~~~~~~~~~~~~~ 912 (1211)
+..+++++. +-.+.+.|+-++.+|++.| +|....-..++.+...-|.-+ .|...++.....|.|-...
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 89 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARI 89 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334444443 4467888999999999988 777776666777777666532 3334444444445444333
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.50 E-value=1.7e+02 Score=33.14 Aligned_cols=188 Identities=7% Similarity=-0.001 Sum_probs=87.9
Q ss_pred hhhHHHHHHHHHhhcchhhHHHHHHHHHHcCC-CCCh---hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCch-----
Q 000951 841 TNTQDAIIMGLKRIAAFQESHFVLRGMAEKGL-TPKC---TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSD----- 911 (1211)
Q Consensus 841 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~g~-~p~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~----- 911 (1211)
...++.++..|...+.++.|..+..+..--.. .++. .-+..++..+.-+++|.+|.+.+..+...- +++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 34556666666777777777777666531000 0111 223456677777788888887777776431 2221
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 000951 912 --VAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLIS 989 (1211)
Q Consensus 912 --~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 989 (1211)
.++..++-+-.-.|++.+- .+|. +.+.......|..|..++ +.|++++-....+. -..
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r-~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~---------------h~~ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPEL-SFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK---------------YKQ 369 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH---------------THH
T ss_pred HHHHHHHHHhHHhhcCCCCCh-HHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH---------------hcc
Confidence 1222222111113553321 1111 111111123455666655 45666654444221 112
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCcc-----ChhhHHHHHHHHHhcccchHHHHHHHHHHHHcCCccc
Q 000951 990 GLCANGDVMPAFELYEEMKHKGLCP-----NSTTYSVLIDAISKKENNLVKGEILLKDIQERGFISW 1051 (1211)
Q Consensus 990 ~~~~~g~~~~a~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 1051 (1211)
.+.+.|.+.-..++...+.+.++.. ...+...+...+.-. ..++ +|.+...+-.+|....
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~-s~ee-aE~iVAkmI~dG~I~A 434 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLD-SEQT-VEYMVSRAIRDGVIEA 434 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHH-HSSC-HHHHHHHHHHHTSSCC
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCC-CHHH-HHHHHHHHHHcCCceE
Confidence 3445566655555544443322221 223444444444322 2233 7877777766666654
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=42.09 E-value=1.2e+02 Score=26.96 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 000951 540 DGLKAFSMFDEMVKLGHHPSIFTYGSLLKGLCKGGNLKEAKRFLNSLHH 588 (1211)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (1211)
+..+..+-++.+...++.|++.+....+.+|.+.+++..|.++++.+..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555566666666667777777777777777777777777777777654
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.63 E-value=87 Score=29.22 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccCh
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPNS 1016 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 1016 (1211)
.+|...+..+ +++..+|..|...++--... -|...+..+...|++.+|.++++.-++++..|..
T Consensus 67 klWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 67 NLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4555555543 44677888888887777655 4556666788889999999999888887766643
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.30 E-value=1.5e+02 Score=27.11 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 000951 720 ANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP 769 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 769 (1211)
+..+|..|..+++-- -..-|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555544443 23344444455555555555555555555554444
No 280
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.75 E-value=2.5e+02 Score=31.33 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=23.7
Q ss_pred hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVG 890 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 890 (1211)
+.++.+.|+.++.+|++.|.+|....-..+..+...-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34677788888888888777765544444444444444
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.21 E-value=96 Score=30.78 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=15.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 000951 146 MLSFMLKDRRVDSVWLLFDDMLDRKICP 173 (1211)
Q Consensus 146 ll~~l~~~~~~~~a~~~~~~m~~~~~~~ 173 (1211)
.|..-++.|+.+.+..+++.+.+.|..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3444456666666666665554444433
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.52 E-value=1.9e+02 Score=26.99 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 000951 720 ANDLLSTMRSRKLCP-SLATYNILLHGYSKKKDLLMCSMLLNTMKMEGLLP 769 (1211)
Q Consensus 720 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 769 (1211)
+..+|..|..+++-- -...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444455555444433 23334444444455555555555555555544444
No 283
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=36.18 E-value=2.4e+02 Score=25.24 Aligned_cols=62 Identities=21% Similarity=0.401 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 000951 610 NLWEAIVLLDEMVQFNLLPDRYTYTILLAGLCRKGKVVSALLFFEKVVSKRTFSPNNVMFTCLV 673 (1211)
Q Consensus 610 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 673 (1211)
+.-+..+-++.+...++.|+.....+-+.+|.+.+++..|+.+|+.+..+- .+....|-.++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 344566667777777788888888888888888888888888888777653 33333454444
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.88 E-value=1.3e+02 Score=27.57 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 000951 881 TLINGMCRVGNFQGAFKLKDEMEAL 905 (1211)
Q Consensus 881 ~l~~~~~~~g~~~eA~~~~~~~~~~ 905 (1211)
.-+..+...|++++|.++|+.-++.
T Consensus 106 ~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 106 AWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3333334444444444444444433
No 285
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.73 E-value=3.7e+02 Score=27.09 Aligned_cols=19 Identities=5% Similarity=-0.012 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 000951 921 LAHCGKVEEAMLVLNRMLR 939 (1211)
Q Consensus 921 ~~~~g~~~eA~~~~~~~~~ 939 (1211)
|.-.++.++|..+.+++.+
T Consensus 209 YEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 209 YEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3445667776666555543
No 286
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.40 E-value=1.5e+02 Score=28.38 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=27.8
Q ss_pred hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 000951 853 RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGN 891 (1211)
Q Consensus 853 ~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 891 (1211)
+-.+.+.|+-++.+|++.|-+|....-..++.+...-|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 446778888888888888877776666666666665554
No 287
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.53 E-value=1.8e+02 Score=28.10 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=33.4
Q ss_pred hHHHHHHHHH---hhcchhhHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 000951 843 TQDAIIMGLK---RIAAFQESHFVLRGMAEKGLTPKCTQYITLINGMCRVGN 891 (1211)
Q Consensus 843 ~~~~l~~~~~---~~g~~~eA~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 891 (1211)
.+..+++++. +-.+.+.|+-++.+|++.|-+|....-..++.+...-|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344444443 446788888888999988888877766666666666654
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.49 E-value=73 Score=33.07 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=61.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHHcC
Q 000951 147 LSFMLKDRRVDSVWLLFDDMLDRKICPNVATFNILINVSCVEGKLKKAGYLLRKMEESGYVPNIVT--YNTLLNWYCKKG 224 (1211)
Q Consensus 147 l~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g 224 (1211)
|..-+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 3444556666655555543 322222211233444456666554333 334455544321 112334445666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 000951 225 RYKAAFKLIDCMASKGIEADVCT---YNMFIDDLCRNNRSAKGYLLLKNMRKRMITP-NEVTYNTLINGFVKEGKIQVAS 300 (1211)
Q Consensus 225 ~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 300 (1211)
+.+-+.-+++. |..++... +.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 65544444333 43333221 12344444555554433 3333334322 1102233344445666666555
Q ss_pred HHHHH
Q 000951 301 RVFDE 305 (1211)
Q Consensus 301 ~~~~~ 305 (1211)
-+++.
T Consensus 179 ~Ll~~ 183 (285)
T 3kea_A 179 LLLDY 183 (285)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55544
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.35 E-value=4.7e+02 Score=27.92 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 000951 388 YTSVIDGLCKCGLLDEAMQLFNKMFKDGLNPDLITFSVLINGFCKVGM--TRKAKAVLCKMYRDGLVPNKII 457 (1211)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 457 (1211)
.+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.+. .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467788888889999999999888532111 13334445555544333 3456777777777776554443
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.72 E-value=54 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhCCChhHHHHHHHH
Q 000951 116 LREGMVEYALETFQLMGFRGFNPSVY--TCNMMLSFMLKDRRVDSVWLLFDD 165 (1211)
Q Consensus 116 ~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~l~~~~~~~~a~~~~~~ 165 (1211)
++.|+++....++ +.|..++.. .-.+.+...++.|+.+-+..+++.
T Consensus 17 ~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 17 TQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 4566655443333 344333221 122345556677777665555543
No 291
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.69 E-value=2.1e+02 Score=32.33 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=38.2
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 000951 847 IIMGLKRIAAFQESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGL 921 (1211)
Q Consensus 847 l~~~~~~~g~~~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~ 921 (1211)
|++...-...++.|..+|.++.. +.|+. ..|+.|+-.....|+.-+|.-+|-+.+.. ..|-+.+..++...+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 34443334445566666666666 55654 55666666555566665666555555533 234444454444433
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.51 E-value=5.8e+02 Score=28.83 Aligned_cols=123 Identities=11% Similarity=-0.035 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCchH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCH------
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGI-SSSDV---AESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTI------ 946 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~------ 946 (1211)
..++.++..|.+.+.+++|..+..+..--.. .++.. .++.+|.++.-.++|.+|.+.+..+++.-|....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~ 311 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHH
Confidence 5677888999999999999999999841100 11111 2356788899999999999999999986544221
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCChhHHHHHH
Q 000951 947 ATFTTLIHKFCKEAKFVDALKLKGTMELSGVKLDVVSYNVLISGLCANGDVMPAFELY 1004 (1211)
Q Consensus 947 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 1004 (1211)
.++..++-+-.-.|++.+-..+ .....+.....|..|..++ +.|+.+.-..+.
T Consensus 312 ~a~K~lI~V~LLlG~iP~r~lf----~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L 364 (523)
T 4b4t_S 312 QSNKLHCCIQLLMGDIPELSFF----HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTI 364 (523)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH----TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHhHHhhcCCCCChHHh----hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 1111112111124665542221 1111111123567777775 567776644443
No 293
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.47 E-value=4.9e+02 Score=27.20 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 000951 781 FCETGMLEVGFKFLKKMIAE 800 (1211)
Q Consensus 781 ~~~~g~~~~A~~~~~~~~~~ 800 (1211)
+...|++++|+..|+.++..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 35678888888888887754
No 294
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=30.26 E-value=39 Score=27.54 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.9
Q ss_pred CCCChhHHhhCchhHHHHHHHHHH
Q 000951 1082 AKIDPTFMEALPEDLLAEVLASQQ 1105 (1211)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1211)
+.+||++...|+.+++.+.+++|+
T Consensus 66 s~VDP~VFyeLP~eVQ~ELla~Wr 89 (108)
T 2khu_A 66 SDIDPQVFYELPEAVQKELLAEWK 89 (108)
T ss_dssp TTCCHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHccHHHHHHHHHHHH
Confidence 568999999999999999998887
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.91 E-value=1.8e+02 Score=29.06 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 000951 322 IDGHCCKGNFKEAFRLLAMME 342 (1211)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~ 342 (1211)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 444555666666666665544
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.34 E-value=1e+02 Score=31.45 Aligned_cols=12 Identities=0% Similarity=-0.033 Sum_probs=5.8
Q ss_pred HHHHHhcCChhH
Q 000951 182 INVSCVEGKLKK 193 (1211)
Q Consensus 182 i~~~~~~g~~~~ 193 (1211)
+...++.|+.+-
T Consensus 9 L~~A~~~g~~~~ 20 (285)
T 1wdy_A 9 LIKAVQNEDVDL 20 (285)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHcCCHHH
Confidence 344455555543
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.50 E-value=8.1e+02 Score=28.75 Aligned_cols=20 Identities=10% Similarity=-0.242 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 000951 531 MIDGYGTLGDGLKAFSMFDE 550 (1211)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~ 550 (1211)
...++.-.|+++.|++.+-.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~ 319 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYT 319 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 44455567777777776654
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.33 E-value=2.2e+02 Score=32.29 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCcccCHHHHHHHHHHh
Q 000951 877 TQYITLINGMCRVGNFQGAFKLKDEMEALGISSSDVAESAMVRGLAHCGKVEEAMLVLNRMLRMRLVPTIATFTTLIHKF 956 (1211)
Q Consensus 877 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~p~~~~~~~L~~~~ 956 (1211)
..+..|++.......++.|..+|.++... .|.+-..|+.|+.+....|+.-+|.-.|-+.+-.. .|-+.+..+|...+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 36677888888888999999999999877 47777899999999988999999999988888764 56888888888777
Q ss_pred hh
Q 000951 957 CK 958 (1211)
Q Consensus 957 ~~ 958 (1211)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.33 E-value=4.2e+02 Score=28.35 Aligned_cols=24 Identities=8% Similarity=0.427 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 000951 284 NTLINGFVKEGKIQVASRVFDEMS 307 (1211)
Q Consensus 284 ~~li~~~~~~g~~~~A~~~~~~m~ 307 (1211)
..+|.=|...|+.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455666666666666666666654
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.29 E-value=68 Score=31.79 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=3.0
Q ss_pred HHcCCHH
Q 000951 291 VKEGKIQ 297 (1211)
Q Consensus 291 ~~~g~~~ 297 (1211)
+..|+.+
T Consensus 117 ~~~~~~~ 123 (240)
T 3eu9_A 117 AQFGHTS 123 (240)
T ss_dssp HHTTCHH
T ss_pred HHcCHHH
Confidence 3444443
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.16 E-value=1.5e+02 Score=29.23 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 000951 858 QESHFVLRGMAEKGLTPKC-TQYITLINGMCRVGNFQGAFKLKDEMEALGISS 909 (1211)
Q Consensus 858 ~eA~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 909 (1211)
+++..+|.-|..+|+--.. .-|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445555555554444432 334444444555555555555555554443333
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.35 E-value=1.4e+02 Score=29.30 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCCCchH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCccC
Q 000951 963 VDALKLKGTMELSGVKLDVV-SYNVLISGLCANGDVMPAFELYEEMKHKGLCPN 1015 (1211)
Q Consensus 963 ~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~ 1015 (1211)
+++..+|..|...++--... -|...+..+...|++.+|.++|+.-++++..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 57777888888887776655 455666678888899999888888877766663
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.27 E-value=49 Score=33.69 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=7.5
Q ss_pred hCCChhHHHHHHHHHHh
Q 000951 152 KDRRVDSVWLLFDDMLD 168 (1211)
Q Consensus 152 ~~~~~~~a~~~~~~m~~ 168 (1211)
+.|+.+.+..+++.+.+
T Consensus 14 ~~g~~~~v~~ll~~l~~ 30 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLT 30 (260)
T ss_dssp HHTCGGGGTTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444333
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.85 E-value=1.9e+02 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 000951 356 LLNGFCKHAKFDLARSLLER 375 (1211)
Q Consensus 356 ll~~~~~~g~~~~a~~l~~~ 375 (1211)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 33444455555555544444
No 305
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.61 E-value=7.1e+02 Score=26.02 Aligned_cols=49 Identities=12% Similarity=-0.079 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 000951 368 LARSLLERMRTNGISISC--IAYTSVIDGLCKCGLLDEAMQLFNKMFKDGL 416 (1211)
Q Consensus 368 ~a~~l~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 416 (1211)
...++-..+....+.|.- -+...-+....|.+++..|..+-+++++.+.
T Consensus 188 R~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 188 RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 333444444444444432 2345556667778888888888888877654
Done!