BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000952
(1210 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8X1F5|ATG18_PICPA Autophagy-related protein 18 OS=Komagataella pastoris GN=ATG18 PE=3
SV=1
Length = 543
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 691 FDYVLYQINETCISTGV-SEYNDDEVQPIAALLALADAP----EAFYISVMLGLEGFGEF 745
++ + + TC+S G S Y V+P L+LAD E + S ++ + G GE
Sbjct: 22 INFANFNQDSTCVSVGYQSGYKIFNVEPFTKCLSLADTSIGIVEMLFSSSLVAIVGLGEL 81
Query: 746 -------------LRRSISVALSRYP--------NRERLNMLLENMIEKFDM 776
RRSI L+ +P NRER+ +LLE+ I +D+
Sbjct: 82 PDSSPRKLKVFNTKRRSIICELT-FPTSILAVKMNRERMVVLLEDTIYIYDI 132
>sp|Q88QX2|BIOB_PSEPK Biotin synthase OS=Pseudomonas putida (strain KT2440) GN=bioB PE=3
SV=1
Length = 352
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 220 ALPTLSSLLSRSFNSQIIPANVVESAENKDSATLSVSTLSNIEEADGMEDLDYIALDVLK 279
AL + +L + FN + A V A + D + VSTL +I+ ED Y
Sbjct: 14 ALAEVKALFQQPFNDLLFQAQTVHRA-HFDPNRVQVSTLLSIKTGACPEDCKYCP----- 67
Query: 280 WRWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGAAALLLGDMEAKMKGQPWKYIGTNDM 339
+S + E ++ +Q++ LE A A +G M G WK+ DM
Sbjct: 68 -----QSGHYNTGLEKQKLMEVQKV-----LEEAARAKAIGSTRFCM-GAAWKHPSAKDM 116
Query: 340 PYLDQLLQ 347
PY+ ++++
Sbjct: 117 PYVLEMVK 124
>sp|A4VR88|BIOB_PSEU5 Biotin synthase OS=Pseudomonas stutzeri (strain A1501) GN=bioB PE=3
SV=1
Length = 351
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 211 AGSPSASRQ--ALPTLSSLLSRSFNSQIIPANVVESAENKDSATLSVSTLSNIEEADGME 268
A S S +R +L + +L + FN + A V ++ D + VSTL +I+ E
Sbjct: 3 ATSASVTRHDWSLAEVKALFEQPFNDLLFQAQTVHR-QHFDPNRVQVSTLLSIKTGACPE 61
Query: 269 DLDYIALDVLKWRWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGAAALLLGDMEAKMKG 328
D Y QS +T D+ M LE A A +G M G
Sbjct: 62 DCKYC------------PQSGHYNTGLDKEKL---MEVQKVLEAAAEAKAIGSTRFCM-G 105
Query: 329 QPWKYIGTNDMPYLDQLLQ 347
WK+ DMPY+ ++++
Sbjct: 106 AAWKHPSAKDMPYVLKMVE 124
>sp|Q9I618|BIOB_PSEAE Biotin synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=bioB PE=3 SV=1
Length = 352
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 220 ALPTLSSLLSRSFNSQIIPANVVESAENKDSATLSVSTLSNIEEADGMEDLDYIALDVLK 279
+L + +L + FN + A V A + D + VSTL +I+ ED Y
Sbjct: 14 SLAEVRALFEQPFNDLLFQAQTVHRA-HFDPNRVQVSTLLSIKTGACPEDCKYC------ 66
Query: 280 WRWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGAAALLLGDMEAKMKGQPWKYIGTNDM 339
QS +T D+ M LE A A +G M G WK+ DM
Sbjct: 67 ------PQSGHYNTGLDKEKL---MEVQKVLEAAAEAKAIGSTRFCM-GAAWKHPSAKDM 116
Query: 340 PYLDQLLQ 347
PY+ ++++
Sbjct: 117 PYVLEMVK 124
>sp|B7V485|BIOB_PSEA8 Biotin synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=bioB
PE=3 SV=1
Length = 352
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 220 ALPTLSSLLSRSFNSQIIPANVVESAENKDSATLSVSTLSNIEEADGMEDLDYIALDVLK 279
+L + +L + FN + A V A + D + VSTL +I+ ED Y
Sbjct: 14 SLAEVRALFEQPFNDLLFQAQTVHRA-HFDPNRVQVSTLLSIKTGACPEDCKYC------ 66
Query: 280 WRWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGAAALLLGDMEAKMKGQPWKYIGTNDM 339
QS +T D+ M LE A A +G M G WK+ DM
Sbjct: 67 ------PQSGHYNTGLDKEKL---MEVQKVLEAAAEAKAIGSTRFCM-GAAWKHPSAKDM 116
Query: 340 PYLDQLLQ 347
PY+ ++++
Sbjct: 117 PYVLEMVK 124
>sp|Q3K5P1|BIOB_PSEPF Biotin synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=bioB
PE=3 SV=1
Length = 351
Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 221 LPTLSSLLSRSFNSQIIPANVVESAENKDSATLSVSTLSNIEEADGMEDLDYIALDVLKW 280
L + +L + FN + A V A + D+ + VSTL +I+ ED Y
Sbjct: 15 LAEVKALFVQPFNDLLFQAQTVHRA-HFDANRVQVSTLLSIKTGACPEDCKYCP------ 67
Query: 281 RWLDESQSSSMSTEGDRVATIQEMSSLNFLEVGAAALLLGDMEAKMKGQPWKYIGTNDMP 340
+S + E +++ +Q++ LE A A +G M G WK+ DMP
Sbjct: 68 ----QSGHYNTGLEKEKLMEVQKV-----LEEAARAKAIGSTRFCM-GAAWKHPSAKDMP 117
Query: 341 YLDQLLQ 347
Y+ ++++
Sbjct: 118 YVLKMVE 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,073,413
Number of Sequences: 539616
Number of extensions: 17269217
Number of successful extensions: 47454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 47378
Number of HSP's gapped (non-prelim): 111
length of query: 1210
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1081
effective length of database: 121,958,995
effective search space: 131837673595
effective search space used: 131837673595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)