Query 000953
Match_columns 1210
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdh_A Beta-catenin; beta-cate 55.7 2.1E+02 0.0073 30.4 14.9 250 578-913 277-528 (529)
2 2z6g_A B-catenin; FULL-length, 43.2 2.2E+02 0.0075 33.6 13.6 252 578-915 410-663 (780)
3 2vgl_B AP-2 complex subunit be 41.7 33 0.0011 38.7 6.3 79 1110-1201 134-221 (591)
4 2vgl_A Adaptor protein complex 40.9 29 0.00098 40.1 5.7 91 1110-1202 161-261 (621)
5 2z6h_A Catenin beta-1, beta-ca 31.3 3.8E+02 0.013 30.2 12.6 299 475-913 225-525 (644)
6 3ul1_B Importin subunit alpha- 16.6 5.2E+02 0.018 28.6 9.8 60 1132-1192 397-465 (510)
7 1w63_A Adapter-related protein 16.4 99 0.0034 35.4 4.2 87 1111-1201 156-253 (618)
8 1h3o_A Transcription initiatio 15.1 1.1E+02 0.0037 27.9 3.3 38 731-773 13-50 (75)
9 2i9c_A Hypothetical protein RP 14.3 1.1E+02 0.0038 30.0 3.3 42 1138-1183 58-99 (123)
10 4db6_A Armadillo repeat protei 12.6 7.7E+02 0.026 22.8 8.5 64 1111-1176 68-134 (210)
No 1
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=55.65 E-value=2.1e+02 Score=30.39 Aligned_cols=250 Identities=13% Similarity=0.086 Sum_probs=120.7
Q ss_pred cchhhhHHHhhcceEEEEecCCccccccccCCCHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 000953 578 EKEESVWASSLSCLLYFVCDRGKIRRSRLNGLDIRVIKAFLETSRKNSWAEVVHCKLICMLINMLYEVPSGHSNAASSFL 657 (1210)
Q Consensus 578 EkdE~VWasALSCLLyfvcd~GkI~R~rL~~LDiRVI~aLLe~S~~nsWAd~VH~kLI~MLaNmLYk~pd~~~~~~~~fl 657 (1210)
..++.+-..|+.++-++ |..+.-.|..+ .+..++..|++.-....-.+.+....++.|+|+-+.+|+.. -.
T Consensus 277 ~~~~~v~~~a~~~L~~L-~~~~~~~~~~~--~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~------~~ 347 (529)
T 1jdh_A 277 SDDINVVTCAAGILSNL-TCNNYKNKMMV--CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE------MA 347 (529)
T ss_dssp CSCHHHHHHHHHHHHHH-TTTCHHHHHHH--HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH------HH
T ss_pred CCCHHHHHHHHHHHHHH-hcCCHHHHHHH--HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH------HH
Confidence 45566666666666665 33322222222 23346666666654321113488888999999976554310 01
Q ss_pred HHHHhhhCChHHHHHHhhccccHHHHHhHHHHHHHHHHHhhcccccccCccccCccchHHHHHHHHhcCCchhHHHHHHh
Q 000953 658 VDQLDLIGGIESIFIEYGLAKSREARRNLYLVLFDYVLYQINETCISTGVSEYNDDEVQPIAALLALADAPEAFYISVML 737 (1210)
Q Consensus 658 ~eqLd~iGGV~fIl~lYs~A~SrEARrNLF~VLFDYVL~~lneac~a~Glse~T~dEaQ~La~LL~~ADApEAF~isFK~ 737 (1210)
-.++-..||+..+...-......+-|+..-. ++..+ +. ..+.| ..+..+++-..+...++-
T Consensus 348 ~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~-----~l~nl---~~--------~~~~~---~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVG-----LIRNL---AL--------CPANH---APLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH-----HHHHH---TT--------SGGGH---HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHhccccchHHHHHHHH-----HHHHH---hc--------Chhhh---HHHHHcCCHHHHHHHHHH
Confidence 2355667999998887766554444444332 22322 10 01111 122233333333333332
Q ss_pred cccchhhHHHHHHhhhhcc--CCchHHHHHHHHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhhhhhccccccCCCccc
Q 000953 738 GLEGFGEFLRRSISVALSR--YPNRERLNMLLENMIEKFDMIISSFTHLDKEFSNLKQTTKTYKFLESIEGATSKNGGVM 815 (1210)
Q Consensus 738 GvEGige~L~~sIs~alsr--~~n~eRLn~LLe~vt~K~d~~~~sf~hlD~ef~~liq~t~s~k~~eSie~~~~~n~~~~ 815 (1210)
+-.. +++..+.+++. +.+..+.+.+++....-+-.+... .+.... +.
T Consensus 409 ~~~~----v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-----~~~~~~------------l~---------- 457 (529)
T 1jdh_A 409 AHQD----TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-----VHNRIV------------IR---------- 457 (529)
T ss_dssp HHHH----HC-----------CBTTBCHHHHHHHHHHHHHHHTTS-----HHHHHH------------HH----------
T ss_pred HhHH----HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-----chHHHH------------Hh----------
Confidence 1111 22222222222 222223333433333333333210 110000 00
Q ss_pred cchhhhhhhhhhccCCCcchhcchhhHHHHHHHHHHhhhccccchhhhhhhHHHHHHhccccCCCCCCCchhHHHHHhhc
Q 000953 816 KAKFSWTTLHSLLHSERIPYRQNGYIWLGDLLIAEISEEREASVWSNIKNLQHQIAYAGVHDYSASSNVPLSIWLMCGLL 895 (1210)
Q Consensus 816 ~a~~~WatLhsLLhSe~~~yR~nGy~WL~~LLiaei~~es~~~~~s~i~~lq~~i~~ag~~D~~~~s~v~~si~L~cgLl 895 (1210)
.......|..+|+++.+.-+.++..=|.+|. .. ......|..+|. +-.++.|+
T Consensus 458 -~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~-----~~---------~~~~~~i~~~~~------------~~~L~~l~ 510 (529)
T 1jdh_A 458 -GLNTIPLFVQLLYSPIENIQRVAAGVLCELA-----QD---------KEAAEAIEAEGA------------TAPLTELL 510 (529)
T ss_dssp -HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-----TS---------HHHHHHHHHTTC------------HHHHHHGG
T ss_pred -ccCCccHHHHHHcCCchHHHHHHHHHHHHHh-----cC---------HHHHHHHHHcCC------------hHHHHHHh
Confidence 1112567778888888777777654444432 11 123456667775 45788999
Q ss_pred cCCCccchhhHHHHHHHH
Q 000953 896 KSKDSTIRWGFLFVLERL 913 (1210)
Q Consensus 896 ks~~~~iR~gfl~vlErl 913 (1210)
++.++.||.-=..+|+|+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999988877888775
No 2
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=43.23 E-value=2.2e+02 Score=33.63 Aligned_cols=252 Identities=14% Similarity=0.098 Sum_probs=131.3
Q ss_pred cchhhhHHHhhcceEEEEecCCccccccccCCCHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 000953 578 EKEESVWASSLSCLLYFVCDRGKIRRSRLNGLDIRVIKAFLETSRKNSWAEVVHCKLICMLINMLYEVPSGHSNAASSFL 657 (1210)
Q Consensus 578 EkdE~VWasALSCLLyfvcd~GkI~R~rL~~LDiRVI~aLLe~S~~nsWAd~VH~kLI~MLaNmLYk~pd~~~~~~~~fl 657 (1210)
..+..|=..|+.||-++.+... .++..-++..++..|++.-.+..-.+.|....++.|.|+-+..++. ...
T Consensus 410 ~~d~~vr~~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~------~~~ 480 (780)
T 2z6g_A 410 SDDINVVTCAAGILSNLTCNNY---KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA------EMA 480 (780)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCH---HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH------HHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH------HHH
Confidence 4566676777777777644321 1222233445677777766542222468888899999996654431 111
Q ss_pred HHHHhhhCChHHHHHHhhccccHHHHHhHHHHHHHHHHHhhcccccccCccccCccchHHHHHHHHhcCCchhHHHHHHh
Q 000953 658 VDQLDLIGGIESIFIEYGLAKSREARRNLYLVLFDYVLYQINETCISTGVSEYNDDEVQPIAALLALADAPEAFYISVML 737 (1210)
Q Consensus 658 ~eqLd~iGGV~fIl~lYs~A~SrEARrNLF~VLFDYVL~~lneac~a~Glse~T~dEaQ~La~LL~~ADApEAF~isFK~ 737 (1210)
-..+-..||+..|+.+.+.....+-|++-..+|-....+ .+.| ..+..+++-..+....+.
T Consensus 481 ~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~----------------~~~~---~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 481 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC----------------PANH---APLREQGAIPRLVQLLVR 541 (780)
T ss_dssp HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS----------------HHHH---HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC----------------HHHH---HHHHHCCCHHHHHHHHHh
Confidence 235556788999888877665544444443322221111 1111 112222222222222221
Q ss_pred cccchhhHHHHHHhhhhcc--CCchHHHHHHHHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhhhhhccccccCCCccc
Q 000953 738 GLEGFGEFLRRSISVALSR--YPNRERLNMLLENMIEKFDMIISSFTHLDKEFSNLKQTTKTYKFLESIEGATSKNGGVM 815 (1210)
Q Consensus 738 GvEGige~L~~sIs~alsr--~~n~eRLn~LLe~vt~K~d~~~~sf~hlD~ef~~liq~t~s~k~~eSie~~~~~n~~~~ 815 (1210)
+-. ..++..+.+++. +....+.+.+.+.++.-|-.++. +.+....+.
T Consensus 542 ~~~----~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l~---------------------- 590 (780)
T 2z6g_A 542 AHQ----DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-----DIHNRIVIR---------------------- 590 (780)
T ss_dssp HHH----HHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-----SHHHHHHHH----------------------
T ss_pred cch----hHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-----ChhhHHHHH----------------------
Confidence 110 011211112222 22222333444455544444432 111111111
Q ss_pred cchhhhhhhhhhccCCCcchhcchhhHHHHHHHHHHhhhccccchhhhhhhHHHHHHhccccCCCCCCCchhHHHHHhhc
Q 000953 816 KAKFSWTTLHSLLHSERIPYRQNGYIWLGDLLIAEISEEREASVWSNIKNLQHQIAYAGVHDYSASSNVPLSIWLMCGLL 895 (1210)
Q Consensus 816 ~a~~~WatLhsLLhSe~~~yR~nGy~WL~~LLiaei~~es~~~~~s~i~~lq~~i~~ag~~D~~~~s~v~~si~L~cgLl 895 (1210)
....+..|..||.++++.-+.++-.-|.+|. .. +.....|..+|. +-.++.|+
T Consensus 591 -~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-----~~---------~~~~~~i~~~g~------------i~~L~~Ll 643 (780)
T 2z6g_A 591 -GLNTIPLFVQLLYSPIENIQRVAAGVLCELA-----QD---------KEAAEAIEAEGA------------TAPLTELL 643 (780)
T ss_dssp -HTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-----TS---------HHHHHHHHHTTC------------HHHHHHGG
T ss_pred -HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-----cC---------HHHHHHHHHCCC------------HHHHHHHH
Confidence 1123667888999998888888777666663 11 234567777775 45788899
Q ss_pred cCCCccchhhHHHHHHHHHH
Q 000953 896 KSKDSTIRWGFLFVLERLLM 915 (1210)
Q Consensus 896 ks~~~~iR~gfl~vlErlLm 915 (1210)
++.+.-||.-=+..|.++..
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHc
Confidence 99999999988888888764
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=41.68 E-value=33 Score=38.72 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHhhcCCChhhHHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChH---------HHHHHHHHH
Q 000953 1110 TSDIRATLLLLLIGKCTADPAAFQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPE---------KYQHMLQNL 1180 (1210)
Q Consensus 1110 ~~d~RaaLLlLLI~rC~~dp~al~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe---------~Y~~~L~~l 1180 (1210)
...+|..-.+-|..-|..+|+.+. .-|-..-++.+|+|+|+-|.+.|..-| .++..+.|+ .++++++.+
T Consensus 134 ~~~VRk~A~~al~~i~~~~p~~~~-~~~~~~~l~~lL~d~d~~V~~~A~~aL-~~i~~~~~~~~~~~l~~~~~~~Ll~~l 211 (591)
T 2vgl_B 134 DPYVRKTAAVCVAKLHDINAQMVE-DQGFLDSLRDLIADSNPMVVANAVAAL-SEISESHPNSNLLDLNPQNINKLLTAL 211 (591)
T ss_dssp CHHHHHHHHHHHHHHHHSSCCCHH-HHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHTTSCCSCCSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhChhhcc-cccHHHHHHHHhCCCChhHHHHHHHHH-HHHHhhCCCccchhccHHHHHHHHHcC
Confidence 346676666666555666788776 556678899999999999998665544 556666663 367666665
Q ss_pred HHHHhhcchhhhhhhhhhhhh
Q 000953 1181 VFKAQQSNNEKLLENLYLQMR 1201 (1210)
Q Consensus 1181 v~kAqq~N~E~LLeNPylQ~~ 1201 (1210)
.. .|||.|+.
T Consensus 212 ~~-----------~~~~~q~~ 221 (591)
T 2vgl_B 212 NE-----------CTEWGQIF 221 (591)
T ss_dssp HH-----------CCHHHHHH
T ss_pred CC-----------CCchHHHH
Confidence 31 36777763
No 4
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=40.91 E-value=29 Score=40.08 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHhhcCCChhhHHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChHHHHHHHHHHHHHHhhc--
Q 000953 1110 TSDIRATLLLLLIGKCTADPAAFQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHMLQNLVFKAQQS-- 1187 (1210)
Q Consensus 1110 ~~d~RaaLLlLLI~rC~~dp~al~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe~Y~~~L~~lv~kAqq~-- 1187 (1210)
-.-+|..-.+-+.--|..+|+.+. .-+-.+-.+.+|+|+|+-|.+.+-. ++..+..+.|+.|......++..-.+.
T Consensus 161 ~~~VRK~A~~al~kl~~~~p~~~~-~~~~~~~l~~lL~d~d~~V~~~a~~-~l~~i~~~~~~~~~~~~~~~~~~L~~ll~ 238 (621)
T 2vgl_A 161 MDSVKQSAALCLLRLYRTSPDLVP-MGDWTSRVVHLLNDQHLGVVTAATS-LITTLAQKNPEEFKTSVSLAVSRLSRIVT 238 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCC-CCSCHHHHHHHTTCSCHHHHHHHHH-HHHHHHHHCHHHHTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhChhhcC-chhHHHHHHHHhCCCCccHHHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence 456776666666666667887776 4455677888999999999865544 667788889988765555444433221
Q ss_pred -c----hh---hhhhhhhhhhhh
Q 000953 1188 -N----NE---KLLENLYLQMRG 1202 (1210)
Q Consensus 1188 -N----~E---~LLeNPylQ~~g 1202 (1210)
+ .| .-..|||+|+.-
T Consensus 239 ~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 239 SASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp CCSSSCSTTEETTEESHHHHHHH
T ss_pred CCCCCccchhhcCCCCchHHHHH
Confidence 0 00 013389999863
No 5
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=31.28 E-value=3.8e+02 Score=30.24 Aligned_cols=299 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCcchhhhhhhhhhhhhhcceeeccccccCCCccccccCCCCCccCccchhhhcCcccccccccCCCchH
Q 000953 475 TLSMLEEMLSSPRIACRVRAFDLILNLGVHAHLLEPMMTDDASTIEEEYPQESFFDDEDQLTTEGKKKVDSAKKLGASTA 554 (1210)
Q Consensus 475 ~LsmLeeMlsS~~a~~R~raFDLIlNLGVHahLlep~~~dDas~Ieee~~~es~~~~~~q~~~~~~~~~~s~~~~G~s~A 554 (1210)
.++.|-+++.++...+|..+--.+-||.-+..-.+-
T Consensus 225 ~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~-------------------------------------------- 260 (644)
T 2z6h_A 225 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG-------------------------------------------- 260 (644)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCS--------------------------------------------
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhh--------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHhhcceEEEEecCCccccccccCCCHHHHHHHHHhhhcchhhHHHHHHH
Q 000953 555 IDKFESWILNILYEILLLLVQIEEKEESVWASSLSCLLYFVCDRGKIRRSRLNGLDIRVIKAFLETSRKNSWAEVVHCKL 634 (1210)
Q Consensus 555 Ie~fe~WlL~IL~EvLl~Lvq~EEkdE~VWasALSCLLyfvcd~GkI~R~rL~~LDiRVI~aLLe~S~~nsWAd~VH~kL 634 (1210)
++.....|+.+ ++..++.|=..|..||.++.+.. ..++-.-++..++..|++.-....-.+.|....
T Consensus 261 ~~~~i~~Lv~l----------L~~~d~~v~~~a~~aL~~L~~~~---~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 261 MEGLLGTLVQL----------LGSDDINVVTCAAGILSNLTCNN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp CHHHHHHHHHH----------TTCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Q ss_pred HHHHHHHhhcCCCCCCCCCccccHHHHhhhCChHHHHHHhhccccHHHHHhHHHHHHHHHHHhhcccccccCccccCccc
Q 000953 635 ICMLINMLYEVPSGHSNAASSFLVDQLDLIGGIESIFIEYGLAKSREARRNLYLVLFDYVLYQINETCISTGVSEYNDDE 714 (1210)
Q Consensus 635 I~MLaNmLYk~pd~~~~~~~~fl~eqLd~iGGV~fIl~lYs~A~SrEARrNLF~VLFDYVL~~lneac~a~Glse~T~dE 714 (1210)
.+.+.|+-+..++ ....-.++-..||+..+..+.+.....+-|+....+|--...+.-
T Consensus 328 ~~aL~nL~~~~~~------~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---------------- 385 (644)
T 2z6h_A 328 ICALRHLTSRHQE------AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---------------- 385 (644)
T ss_dssp HHHHHHHTSSSTT------HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----------------
T ss_pred HHHHHHHhcCCch------HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----------------
Q ss_pred hHHHHHHHHhcCCchhHHHHHHhcccchhhHHHHHHhhhhcc--CCchHHHHHHHHHHHHHhhhhhhhcccchhhhhhhh
Q 000953 715 VQPIAALLALADAPEAFYISVMLGLEGFGEFLRRSISVALSR--YPNRERLNMLLENMIEKFDMIISSFTHLDKEFSNLK 792 (1210)
Q Consensus 715 aQ~La~LL~~ADApEAF~isFK~GvEGige~L~~sIs~alsr--~~n~eRLn~LLe~vt~K~d~~~~sf~hlD~ef~~li 792 (1210)
--..+..+++-..+....+.+-.. +++..+.+++. +.+..+-+.+.+....-|-.++. +.+....+
T Consensus 386 ---~~~~i~~~~~i~~Lv~lL~~~~~~----vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l 453 (644)
T 2z6h_A 386 ---NHAPLREQGAIPRLVQLLVRAHQD----TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVI 453 (644)
T ss_dssp ---GHHHHHHTTHHHHHHHHHHHHHHH----HTTC----------CCSSCHHHHHHHHHHHHHHHTT-----SHHHHHHH
T ss_pred ---HHHHHHHcCCHHHHHHHHhccchh----hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-----CHHHHHHH
Q ss_pred hhhhhhhhhhhccccccCCCccccchhhhhhhhhhccCCCcchhcchhhHHHHHHHHHHhhhccccchhhhhhhHHHHHH
Q 000953 793 QTTKTYKFLESIEGATSKNGGVMKAKFSWTTLHSLLHSERIPYRQNGYIWLGDLLIAEISEEREASVWSNIKNLQHQIAY 872 (1210)
Q Consensus 793 q~t~s~k~~eSie~~~~~n~~~~~a~~~WatLhsLLhSe~~~yR~nGy~WL~~LLiaei~~es~~~~~s~i~~lq~~i~~ 872 (1210)
. ....+..|..+|+++.+.-+..+-.=|.+|. .-+.....|..
T Consensus 454 ~-----------------------~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~--------------~~~~~~~~i~~ 496 (644)
T 2z6h_A 454 R-----------------------GLNTIPLFVQLLYSPIENIQRVAAGVLCELA--------------QDKEAAEAIEA 496 (644)
T ss_dssp H-----------------------HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH--------------TSHHHHHHHHH
T ss_pred H-----------------------hCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH--------------cCHHHHHHHHH
Q ss_pred hccccCCCCCCCchhHHHHHhhccCCCccchhhHHHHHHHH
Q 000953 873 AGVHDYSASSNVPLSIWLMCGLLKSKDSTIRWGFLFVLERL 913 (1210)
Q Consensus 873 ag~~D~~~~s~v~~si~L~cgLlks~~~~iR~gfl~vlErl 913 (1210)
+|. +-.++.|+++.++-||.-=..+|.++
T Consensus 497 ~g~------------l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 497 EGA------------TAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp TTC------------HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cCC------------hhHHHHHHcCCCHHHHHHHHHHHHHH
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=16.62 E-value=5.2e+02 Score=28.55 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred HHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhh----hChHHHHHHHHH-----HHHHHhhcchhhh
Q 000953 1132 FQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMT----EKPEKYQHMLQN-----LVFKAQQSNNEKL 1192 (1210)
Q Consensus 1132 l~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~----e~pe~Y~~~L~~-----lv~kAqq~N~E~L 1192 (1210)
+. +-|+..-+..||.++|+++..++-..|-.-+.. .+.++|.+++.. .+..-|...|+.+
T Consensus 397 L~-~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i 465 (510)
T 3ul1_B 397 LV-HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESV 465 (510)
T ss_dssp HH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHH
T ss_pred HH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 55 679999999999999999999988776554432 356788877653 2444454444433
No 7
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=16.38 E-value=99 Score=35.36 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhhcCCChhhHHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChH---HHHHHHHHHHHHHhhc
Q 000953 1111 SDIRATLLLLLIGKCTADPAAFQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPE---KYQHMLQNLVFKAQQS 1187 (1210)
Q Consensus 1111 ~d~RaaLLlLLI~rC~~dp~al~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe---~Y~~~L~~lv~kAqq~ 1187 (1210)
..+|.+-++-+.--|..+|+... +-....+.+|+|+|+-|.+.|. .++..+...+|+ .|+.++..++..-.+.
T Consensus 156 ~~VRk~A~~al~~l~~~~p~~v~---~~~~~l~~lL~D~d~~V~~~Al-~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~ 231 (618)
T 1w63_A 156 SYLRKKAALCAVHVIRKVPELME---MFLPATKNLLNEKNHGVLHTSV-VLLTEMCERSPDMLAHFRKLVPQLVRILKNL 231 (618)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGG---GGGGGTTTSTTCCCHHHHHHHH-HHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHChHHHH---HHHHHHHHHhCCCCHhHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 45666555555555555787554 3345568899999999987654 555667766765 5666555555433331
Q ss_pred c-----hhhh---hhhhhhhhh
Q 000953 1188 N-----NEKL---LENLYLQMR 1201 (1210)
Q Consensus 1188 N-----~E~L---LeNPylQ~~ 1201 (1210)
. .|.- ..|||+|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 232 IMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp HHSCCCTTTCSSSSSCHHHHHH
T ss_pred HcCCCCccccccCCCCChHHHH
Confidence 1 1111 248999875
No 8
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=15.13 E-value=1.1e+02 Score=27.92 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHhcccchhhHHHHHHhhhhccCCchHHHHHHHHHHHHH
Q 000953 731 FYISVMLGLEGFGEFLRRSISVALSRYPNRERLNMLLENMIEK 773 (1210)
Q Consensus 731 F~isFK~GvEGige~L~~sIs~alsr~~n~eRLn~LLe~vt~K 773 (1210)
..|.-|||++.++.-..+-||.| ..|||..|||+++.-
T Consensus 13 ~~I~~k~gl~~~~~dv~~~iS~a-----~qeRLr~llekl~~~ 50 (75)
T 1h3o_A 13 LEIGKKHGITELHPDVVSYVSHA-----TQQRLQNLVEKISET 50 (75)
T ss_dssp HHHHHTTTCCEECTTHHHHHHHH-----HHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCcCChhHHHHhHHH-----HHHHHHHHHHHHHHH
Confidence 35778999999999999999875 478999999998863
No 9
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=14.27 E-value=1.1e+02 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=36.2
Q ss_pred chHHHHHhhcCCcchhhhhhHHHHHHHHhhhChHHHHHHHHHHHHH
Q 000953 1138 GEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHMLQNLVFK 1183 (1210)
Q Consensus 1138 G~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe~Y~~~L~~lv~k 1183 (1210)
|+.-+-.||++|+..|+..|+.++|. ..|++=+..|+.+...
T Consensus 58 ~R~aLl~Ll~H~n~~VRl~AA~~~L~----~~p~~A~~vLe~ia~~ 99 (123)
T 2i9c_A 58 QRTALLSLFEYPNMQVRLQAAKLTLA----VAPVKAREQLEAIVSS 99 (123)
T ss_dssp GGGGGGGGGGSSCHHHHHHHHHTTTT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHh----hChHHHHHHHHHHHhC
Confidence 66668899999999999999987654 7899999999998764
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=12.58 E-value=7.7e+02 Score=22.82 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhcCCChhh---HHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChHHHHHH
Q 000953 1111 SDIRATLLLLLIGKCTADPAA---FQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHM 1176 (1210)
Q Consensus 1111 ~d~RaaLLlLLI~rC~~dp~a---l~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe~Y~~~ 1176 (1210)
.++|..-+..|-.-|..+++. +. +-||...+..+|.++|.+++..+.. .|..+....++..+.+
T Consensus 68 ~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 68 EQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALW-ALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHTTCSCHHHHHHHHH-HHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHcCCcHHHHHHHHH-HHHHHHcCCHHHHHHH
Confidence 466776666666666656543 44 5689999999999999999987654 5556666666665443
Done!