Query 000954
Match_columns 1210
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 11:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12755 Vac14_Fab1_bd: Vacuol 41.8 29 0.00062 33.4 3.5 28 1144-1171 34-61 (97)
2 cd00020 ARM Armadillo/beta-cat 35.5 1.9E+02 0.0042 25.7 7.5 60 1111-1171 21-82 (120)
3 PF02985 HEAT: HEAT repeat; I 30.7 42 0.0009 25.7 2.2 24 1140-1163 3-26 (31)
4 COG5187 RPN7 26S proteasome re 25.5 89 0.0019 36.6 4.5 71 759-855 80-150 (412)
5 PF01602 Adaptin_N: Adaptin N 17.1 2.3E+02 0.0051 32.6 5.6 84 1112-1202 129-212 (526)
6 PF07607 DUF1570: Protein of u 16.4 4.8E+02 0.01 26.8 7.0 76 1100-1181 45-122 (128)
7 KOG0687 26S proteasome regulat 14.6 1.7E+03 0.037 27.1 11.4 122 707-854 13-138 (393)
8 PF08649 DASH_Dad1: DASH compl 12.9 1.9E+02 0.0041 26.6 2.7 39 764-802 8-46 (58)
9 KOG1488 Translational represso 12.8 3.3E+02 0.0072 33.7 5.5 153 581-771 308-499 (503)
10 PF14666 RICTOR_M: Rapamycin-i 12.8 4.6E+02 0.01 29.0 6.2 86 609-696 83-175 (226)
No 1
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=41.75 E-value=29 Score=33.36 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=20.7
Q ss_pred HhhcCCcchhhhhhHHHHHHHHhhhChH
Q 000954 1144 ELLDDTDSRVAYYSSAFLLKRMMTEKPE 1171 (1210)
Q Consensus 1144 ~LL~d~d~Rvay~ss~FLl~~~m~e~pe 1171 (1210)
..++|.|+||||||..-|..-.+.-..+
T Consensus 34 ~~~~D~d~rVRy~AcEaL~ni~k~~~~~ 61 (97)
T PF12755_consen 34 KCFDDQDSRVRYYACEALYNISKVARGE 61 (97)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999998877655444433
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=35.50 E-value=1.9e+02 Score=25.72 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHhhcCCChhhHHH--hhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChH
Q 000954 1111 SDIRATLLLLLIGKCTADPAAFQE--EVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPE 1171 (1210)
Q Consensus 1111 ~d~RaaLLlLLI~rC~~dp~al~~--~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe 1171 (1210)
.+.|...+..|..-|..+++-.++ +-|+...+..+|+|+|.+++.++. ..|.++-...|+
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~-~~L~~l~~~~~~ 82 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL-WALRNLAAGPED 82 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHH-HHHHHHccCcHH
Confidence 678888888888888865554442 449999999999999999998654 455666555443
No 3
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=30.74 E-value=42 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHhhcCCcchhhhhhHHHHHH
Q 000954 1140 EFFRELLDDTDSRVAYYSSAFLLK 1163 (1210)
Q Consensus 1140 ~fFr~LL~d~d~Rvay~ss~FLl~ 1163 (1210)
.+|..+|+|++.+||+-|..-|-+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 467899999999999988776644
No 4
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=89 Score=36.62 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhhhhhccccccCCCccccchhhhhhhhhhccCCCcchhcc
Q 000954 759 NRERLNMLLENMIEKFDMIISSFTHLDKEFSNLKQTTKTYKFLESIEGATSKNGGVMKAKFSWTTLHSLLHSERIPYRQN 838 (1210)
Q Consensus 759 n~eRLn~LLe~vt~K~d~~~~sf~hlD~ef~~liq~t~s~k~~eSie~~~~~n~~~~~a~~~WatLhsLLhSe~~~yR~n 838 (1210)
..+|||.|+.+=-+||.++-.+-. +....| ........|..+..--+ .+-.++|
T Consensus 80 D~~~~n~l~kkneeki~Elde~i~-----------------------~~eedn-gE~e~~ea~~n~aeyY~--qi~D~~n 133 (412)
T COG5187 80 DRGRMNTLLKKNEEKIEELDERIR-----------------------EKEEDN-GETEGSEADRNIAEYYC--QIMDIQN 133 (412)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHH-----------------------HHhhcc-cchHHHHHHHHHHHHHH--HHhhhhh
Confidence 468899998887777765422211 111222 11122223444333211 2556899
Q ss_pred hhhHHHHHHHHHHhhhc
Q 000954 839 GYIWLGDLLIAEISEER 855 (1210)
Q Consensus 839 Gy~WL~~LLiaei~~es 855 (1210)
|.-|+.+++-..++-+-
T Consensus 134 g~~~~~~~~~~a~stg~ 150 (412)
T COG5187 134 GFEWMRRLMRDAMSTGL 150 (412)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999998554
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=17.11 E-value=2.3e+02 Score=32.58 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHhhcchHHHHHhhcCCcchhhhhhHHHHHHHHhhhChHHHHHHHHHHHHHHhhcchhh
Q 000954 1112 DIRATLLLLLIGKCTADPAAFQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKRMMTEKPEKYQHMLQNLVFKAQQSNNEK 1191 (1210)
Q Consensus 1112 d~RaaLLlLLI~rC~~dp~al~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~~m~e~pe~Y~~~L~~lv~kAqq~N~E~ 1191 (1210)
.+|..-++-+..-+..+|+.+. .- =..-...+|.|+|+-|...| ..++..+ ...|+.|..++..++.+-.+.-
T Consensus 129 ~VRk~A~~~l~~i~~~~p~~~~-~~-~~~~l~~lL~d~~~~V~~~a-~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l--- 201 (526)
T PF01602_consen 129 YVRKKAALALLKIYRKDPDLVE-DE-LIPKLKQLLSDKDPSVVSAA-LSLLSEI-KCNDDSYKSLIPKLIRILCQLL--- 201 (526)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHH-GG-HHHHHHHHTTHSSHHHHHHH-HHHHHHH-HCTHHHHTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccCHHHHH-HH-HHHHHhhhccCCcchhHHHH-HHHHHHH-ccCcchhhhhHHHHHHHhhhcc---
Confidence 6777666666666666888776 21 36778899999999888765 4555555 5666666666666665544311
Q ss_pred hhhhhhhhhhh
Q 000954 1192 LLENLYLQMRG 1202 (1210)
Q Consensus 1192 LLeNPylQ~~g 1202 (1210)
-..+||+|+.-
T Consensus 202 ~~~~~~~q~~i 212 (526)
T PF01602_consen 202 SDPDPWLQIKI 212 (526)
T ss_dssp TCCSHHHHHHH
T ss_pred cccchHHHHHH
Confidence 33588888654
No 6
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=16.44 E-value=4.8e+02 Score=26.83 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=42.8
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHh-hcCCChhhHHHhhcchHHHHHhhcCCcchhhhhhHHHHHHH-HhhhChHHHHHHH
Q 000954 1100 SKGRGNLPGATSDIRATLLLLLIG-KCTADPAAFQEEVGGEEFFRELLDDTDSRVAYYSSAFLLKR-MMTEKPEKYQHML 1177 (1210)
Q Consensus 1100 s~~~gnlpga~~d~RaaLLlLLI~-rC~~dp~al~~~vGG~~fFr~LL~d~d~Rvay~ss~FLl~~-~m~e~pe~Y~~~L 1177 (1210)
+.+|+--.|+..+.|..-+--+.. +=..+. +.+-+.- -....+++.--.-||.+..|.+ ||.++|++|.+.|
T Consensus 45 ~~~~~~~iG~vn~~rl~~~~~~~~~~~~~~~--~~~ll~~----D~~F~~~~~~~~aYA~sWaL~~~L~~~r~~~f~~yL 118 (128)
T PF07607_consen 45 SGRRWSGIGRVNRMRLAWFRAYLRGRRPGDS--LEQLLQS----DDAFRARDTALDAYAESWALVHFLMETRPEEFARYL 118 (128)
T ss_pred CcccccccCccCHHHHHHHHHHHhccccchh--HHHHhhh----ccccccccchHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 344444568889999877665555 222111 0001111 1122333334445555555554 7899999999999
Q ss_pred HHHH
Q 000954 1178 QNLV 1181 (1210)
Q Consensus 1178 ~~lv 1181 (1210)
+.|-
T Consensus 119 ~~l~ 122 (128)
T PF07607_consen 119 RELS 122 (128)
T ss_pred HHHh
Confidence 9874
No 7
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=14.63 E-value=1.7e+03 Score=27.07 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=70.3
Q ss_pred ccccCccchHHHHHHHHhcCCc----hhHHHHHHhcccchhhHHHHHHhhhhccCCchHHHHHHHHHHHHHhhhhhhhcc
Q 000954 707 VSEYNDDEVQPIAALLALADAP----EAFYISVMLGLEGFGEFLRRSISVALSRYPNRERLNMLLENMIEKFDMIISSFT 782 (1210)
Q Consensus 707 lse~T~dEaQ~La~LL~~ADAp----EAF~isFK~GvEGige~L~~sIs~alsr~~n~eRLn~LLe~vt~K~d~~~~sf~ 782 (1210)
+....+-|+-.+..+|.+..-+ ++-.-.+-.+-+.=+-|+++.++..+.---..++||.|+.+=-+|++++
T Consensus 13 ~~~~p~le~sq~~FlLt~p~~~~~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~el----- 87 (393)
T KOG0687|consen 13 LMRVPDLELSQLRFLLTHPEVLGQKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKEL----- 87 (393)
T ss_pred cccCcchhHHHHHHHHcCccccCcCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHH-----
Confidence 4444444555566777766544 3444455555565566788888776666667888998887777766543
Q ss_pred cchhhhhhhhhhhhhhhhhhhccccccCCCccccchhhhhhhhhhccCCCcchhcchhhHHHHHHHHHHhhh
Q 000954 783 HLDKEFSNLKQTTKTYKFLESIEGATSKNGGVMKAKFSWTTLHSLLHSERIPYRQNGYIWLGDLLIAEISEE 854 (1210)
Q Consensus 783 hlD~ef~~liq~t~s~k~~eSie~~~~~n~~~~~a~~~WatLhsLLhSe~~~yR~nGy~WL~~LLiaei~~e 854 (1210)
...|+ +..++ .+-.+. .-++.++...-| ++-.++||..|+....=..++-|
T Consensus 88 ------d~~ie-----daeen-lGE~ev-~ea~~~kaeYyc--------qigDkena~~~~~~t~~ktvs~g 138 (393)
T KOG0687|consen 88 ------DEKIE-----DAEEN-LGESEV-REAMLRKAEYYC--------QIGDKENALEALRKTYEKTVSLG 138 (393)
T ss_pred ------HHHHH-----HHHHh-cchHHH-HHHHHHHHHHHH--------HhccHHHHHHHHHHHHHHHhhcc
Confidence 22332 11111 000010 011223333444 47788999999999887777733
No 8
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=12.93 E-value=1.9e+02 Score=26.60 Aligned_cols=39 Identities=10% Similarity=0.396 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhhhh
Q 000954 764 NMLLENMIEKFDMIISSFTHLDKEFSNLKQTTKTYKFLE 802 (1210)
Q Consensus 764 n~LLe~vt~K~d~~~~sf~hlD~ef~~liq~t~s~k~~e 802 (1210)
..|+..|++.+|.+....-.|+...++.|++.|.++.++
T Consensus 8 ~~Li~eI~~~~e~vl~nlN~LNRsLE~~i~VGkEF~~V~ 46 (58)
T PF08649_consen 8 DRLIQEISESMESVLNNLNALNRSLESVISVGKEFESVS 46 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH
Confidence 468999999999999999999999999999999886443
No 9
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=12.83 E-value=3.3e+02 Score=33.66 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=87.7
Q ss_pred hhhHHHhhcceEEEEecCCccccccccCCCHHHHHHHHHhhhcchhh---HHHHHHHHHHHHHHhh----cC-CC-CCCC
Q 000954 581 ESVWASSLSCLLYFVCDRGKIRRSRLNGLDIRVIKAFLETSRKNSWA---EVVHCKLICMLINMLY----EV-PS-GHSN 651 (1210)
Q Consensus 581 E~VWasALSCLLyfvcd~GkI~R~rL~~LDiRVI~aLLe~S~~nsWA---d~VH~kLI~MLaNmLY----k~-pd-~~~~ 651 (1210)
|.+|.+++.=++.|.+++|++.-==-|.-=||||..+||...+..-. |++|..+-.+..|=+- ++ -. |...
T Consensus 308 e~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~ 387 (503)
T KOG1488|consen 308 ETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPY 387 (503)
T ss_pred hccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChh
Confidence 55666666667888888888777667778899999999988653322 3455554444333221 11 11 1111
Q ss_pred C-----------CccccHHHHh--------hhCC-------hHHHHHHhhccccHHHHHhHHHHHHH----HHHHhhccc
Q 000954 652 A-----------ASSFLVDQLD--------LIGG-------IESIFIEYGLAKSREARRNLYLVLFD----YVLYQINET 701 (1210)
Q Consensus 652 ~-----------~~~fl~eqLd--------~iGG-------V~fIl~lYs~A~SrEARrNLF~VLFD----YVL~~lnea 701 (1210)
. -+.|..+.++ .+|+ |+.||.-|-... -.|..++|| |||+++=+.
T Consensus 388 ~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~-----~~L~~mmkdQYgNYVVQkmi~~ 462 (503)
T KOG1488|consen 388 RDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHP-----DALDIMMKDQYGNYVVQKMIDI 462 (503)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCc-----cHHHHHHHHhhhhhHHHHHHHh
Confidence 1 1223333332 1244 444444443333 688999998 999998555
Q ss_pred ccccCccccCccchHHHHHHHHhcCCchhHHHHHHhcccchhhHHHHHHhhhhccCCchHHHHHHHHHHH
Q 000954 702 CISTGVSEYNDDEVQPIAALLALADAPEAFYISVMLGLEGFGEFLRRSISVALSRYPNRERLNMLLENMI 771 (1210)
Q Consensus 702 c~a~Glse~T~dEaQ~La~LL~~ADApEAF~isFK~GvEGige~L~~sIs~alsr~~n~eRLn~LLe~vt 771 (1210)
|. .+ | .+-|-..+++-++ +|-+|+---++-+.|||..
T Consensus 463 ~~--------~~--q----------------------~~~i~~rI~~h~~-~Lrk~syGKhIia~lek~~ 499 (503)
T KOG1488|consen 463 CG--------PE--Q----------------------RELIKSRVKPHAS-RLRKFSYGKHIIAKLEKLR 499 (503)
T ss_pred cC--------HH--H----------------------HHHHHHHHHHHHH-HHccCccHHHHHHHHHHhc
Confidence 51 11 1 2234444777777 8888885556666666543
No 10
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=12.77 E-value=4.6e+02 Score=29.01 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhhcC-C-CCCCCCCccccHHHHhhhCC---hHHHHHHhhccccH--H
Q 000954 609 LDIRVIKAFLETSRKNSWAEVVHCKLICMLINMLYEV-P-SGHSNAASSFLVDQLDLIGG---IESIFIEYGLAKSR--E 681 (1210)
Q Consensus 609 LDiRVI~aLLe~S~~nsWAd~VH~kLI~MLaNmLYk~-p-d~~~~~~~~fl~eqLd~iGG---V~fIl~lYs~A~Sr--E 681 (1210)
+=|..+..||+.+.. -.-....++++=+++.|.+. | .|..+..+.|++++++.--. ..+|=.+-+...-. =
T Consensus 83 vGc~L~~~Ll~~~eG--~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lL 160 (226)
T PF14666_consen 83 VGCQLLETLLSSPEG--IKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLL 160 (226)
T ss_pred HHHHHHHHHHcCcHH--HHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHHH
Confidence 346677888877642 22234779999999999996 4 56556689999999987644 44444443333333 2
Q ss_pred HHHhHHHHHHHHHHH
Q 000954 682 ARRNLYLVLFDYVLY 696 (1210)
Q Consensus 682 ARrNLF~VLFDYVL~ 696 (1210)
+|-++|.++...+-.
T Consensus 161 e~~~if~~l~~i~~~ 175 (226)
T PF14666_consen 161 ERWNIFTMLYHIFSL 175 (226)
T ss_pred HHCCHHHHHHHHHcc
Confidence 677888887766544
Done!